Citrus Sinensis ID: 044538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYHLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEEEcccccccEEEccEEccccccEEEEEcccccccHHHHHHHHHccccccEEEEEccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEEEEEccccccEEEEEEEEEEccccEEEEEccccccHHHHHHHHHcccccccEEEEEcHHHHHHccHHHHHHHHHHcccccHHHHcccHHHccccHHHHEEEEccccccccHHHHHHHHHHHHccccEEEEEEcccccc
Coil and Loop (DISEMBL)
ikyfheptestspmLQLIEVIsfsypnlqdirlsnvdmgiDMGTCVaivgpndtgksplpnlLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRkfglpghnhltpianlsggqKVRVMFTLVSMYHLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI
Flexible Loop (DISEMBL)
ikyfheptestspmlQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVgpndtgksplpnlLAVRRRQKLrigrhsrhledlLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYHLDTQSIVAVAVTLDEFAGgvvlvshdsrli
Low Complexity Region (SEG)
IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYHLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI
Disordered region (IsUnstruct)
**************LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTG***LPNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYHLDTQSIVAVAVTLDEFAGGVVLVS******
Disordered Region (DISOPRED)
IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYHLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI
Disordered Region (DISEMBL)
***********SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYHLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI
Disordered Region (DISPRO)
IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYHLDTQSIVAVAVTLDEFAGGVVLVSHDS*LI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYHLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q9M1H3	723	ABC transporter F family	yes	no	0.981	0.214	0.598	2e-52
Q9FJH6	595	ABC transporter F family	no	no	0.905	0.240	0.364	1e-21
Q9UG63	623	ATP-binding cassette sub-	yes	no	1.0	0.253	0.306	6e-20
Q99LE6	628	ATP-binding cassette sub-	yes	no	1.0	0.251	0.306	7e-20
Q2KJA2	625	ATP-binding cassette sub-	yes	no	1.0	0.252	0.301	2e-19
Q7YR37	807	ATP-binding cassette sub-	no	no	0.867	0.169	0.339	6e-16
Q9USH9	822	Uncharacterized ABC trans	yes	no	0.917	0.176	0.320	7e-16
Q767L0	807	ATP-binding cassette sub-	no	no	0.867	0.169	0.339	7e-16
Q8NE71	845	ATP-binding cassette sub-	no	no	0.867	0.162	0.339	7e-16
Q6MG08	839	ATP-binding cassette sub-	no	no	0.867	0.163	0.339	1e-15

>sp|Q9M1H3|AB4F_ARATH ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1

 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 129/197 (65%), Gaps = 42/197 (21%)

Query: 3   YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
           +F EPTE T P+LQLIEV SFSYPN  D RLSNVD+GIDMGT VAIVGPN  GKS L NL
Sbjct: 484 HFPEPTELTPPLLQLIEV-SFSYPNRPDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNL 542

Query: 63  LA---------VRRRQKLRIGRHSRHLEDLLTM--------------------EEAVHAK 93
           LA         +RR QKLRIGR+S+H  DLLTM                    +EAV AK
Sbjct: 543 LAGDLVPTEGEMRRSQKLRIGRYSQHFVDLLTMGETPVQYLLRLHPDQEGFSKQEAVRAK 602

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
           L KFGLP HNHL+PIA LSGGQK RV+FT +SM             HLD QSI A+A  L
Sbjct: 603 LGKFGLPSHNHLSPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 662

Query: 142 DEFAGGVVLVSHDSRLI 158
           DEF GGVVLVSHDSRLI
Sbjct: 663 DEFTGGVVLVSHDSRLI 679

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 41/184 (22%)

Query: 13  PMLQLIEVISFSY-PNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA------- 64
           P+LQ +EV SF Y P+   +   N+D G+D+ + VA+VGPN  GKS L  L+        
Sbjct: 378 PVLQFVEV-SFGYTPDY--LIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGELHPTE 434

Query: 65  --VRRRQKLRIGRHSRHLEDLL----------------TMEEAVHAKLRKFGLPGHNHLT 106
             VRR   L+I ++ +HL + L                T EE + A + +FGL G   + 
Sbjct: 435 GMVRRHNHLKIAQYHQHLAEKLDLELPALLYMMREFPGTEEEKMRAAIGRFGLTGKAQVM 494

Query: 107 PIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHD 154
           P+ NLS GQ+ RV+F  ++              HLD ++I ++A  L+E+ GG+VLVSHD
Sbjct: 495 PMKNLSDGQRSRVIFAWLAYKQPNMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHD 554

Query: 155 SRLI 158
            RLI
Sbjct: 555 FRLI 558

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 38/196 (19%)

Query: 1   IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSP-- 58
           + ++  P     P + +++ +SF Y        +N++ GID+ T VA+VGPN  GKS   
Sbjct: 381 LSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLL 440

Query: 59  -------LPNLLAVRRRQKLRIGRHSRHLEDLLTME-----------------EAVHAKL 94
                  LP    +R+   ++IGR+ +HL++ L ++                 E +   +
Sbjct: 441 KLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKII 500

Query: 95  RKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLD 142
            ++GL G   ++PI NLS GQK RV    ++              HLD ++I A+A  ++
Sbjct: 501 GRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAIN 560

Query: 143 EFAGGVVLVSHDSRLI 158
           EF GG++LVSHD RLI
Sbjct: 561 EFEGGMMLVSHDFRLI 576

Homo sapiens (taxid: 9606)

>sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 38/196 (19%)

Query: 1   IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSP-- 58
           + ++  P     P + +++ +SF Y        +N++ GID+ T VA+VGPN  GKS   
Sbjct: 386 LSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLL 445

Query: 59  -------LPNLLAVRRRQKLRIGRHSRHLEDLLTME-----------------EAVHAKL 94
                  LP    +R+   ++IGR+ +HL++ L ++                 E +   +
Sbjct: 446 KLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKII 505

Query: 95  RKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLD 142
            ++GL G   ++PI NLS GQK RV    ++              HLD ++I A+A  ++
Sbjct: 506 GRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAIN 565

Query: 143 EFAGGVVLVSHDSRLI 158
           EF GG++LVSHD RLI
Sbjct: 566 EFEGGMMLVSHDFRLI 581

Mus musculus (taxid: 10090)

>sp|Q2KJA2|ABCF2_BOVIN ATP-binding cassette sub-family F member 2 OS=Bos taurus GN=ABCF2 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 38/196 (19%)

Query: 1   IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSP-- 58
           + ++  P     P + +++ +SF Y        +N++ GID+ T VA+VGPN  GKS   
Sbjct: 383 LSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLL 442

Query: 59  -------LPNLLAVRRRQKLRIGRHSRHLEDLLTME-----------------EAVHAKL 94
                  LP    +R+   ++IGR+ +HL++ L ++                 E +   +
Sbjct: 443 KLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKII 502

Query: 95  RKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLD 142
            ++GL G   ++PI NLS GQK RV    ++              HLD ++I A+A  ++
Sbjct: 503 GRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAIN 562

Query: 143 EFAGGVVLVSHDSRLI 158
           +F GG++LVSHD RLI
Sbjct: 563 DFEGGMMLVSHDFRLI 578

Bos taurus (taxid: 9913)

>sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F member 1 OS=Pan troglodytes GN=ABCF1 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 37/174 (21%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------VRRRQKL 71
           ++F Y   Q     N+D GIDM + + IVGPN  GKS L  LL          +R+  +L
Sbjct: 592 VTFGYEG-QKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEMRKNHRL 650

Query: 72  RIGRHSRHLEDLLTMEEAVHAKLR---------------KFGLPGHNHLTPIANLSGGQK 116
           +IG  ++   + L MEE     L+               +FGL  H H   I  LSGGQK
Sbjct: 651 KIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQK 710

Query: 117 VRVMFTLVS------------MYHLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI 158
            RV+F  ++              +LD +SI A+   ++E+ G V++VSHD+RLI
Sbjct: 711 ARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLI 764

Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.

Pan troglodytes (taxid: 9598)

>sp|Q9USH9|YJQ1_SCHPO Uncharacterized ABC transporter ATP-binding protein C825.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC825.01 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 39/184 (21%)

Query: 12  SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPL---------PNL 62
           SP ++  +V SF+YP    I  S ++ G+D+ + VA+VGPN  GK+ L         P+ 
Sbjct: 591 SPAIKFQDV-SFNYPGGPTI-FSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPST 648

Query: 63  LAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLR----------------KFGLPGHNHLT 106
            +V R   LR+   ++H+ D L M  +    LR                ++GL G + + 
Sbjct: 649 GSVVRHHGLRLALFNQHMGDQLDMRLSAVEWLRTKFGNKPEGEMRRIVGRYGLTGKSQVI 708

Query: 107 PIANLSGGQKVRVMFTLVSMYH------------LDTQSIVAVAVTLDEFAGGVVLVSHD 154
           P+  LS GQ+ RV+F  + M              LD  +I A+A  L+ F GGVV ++HD
Sbjct: 709 PMGQLSDGQRRRVLFAFLGMTQPHILLLDEPTNALDIDTIDALADALNNFDGGVVFITHD 768

Query: 155 SRLI 158
            RLI
Sbjct: 769 FRLI 772

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 37/174 (21%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------VRRRQKL 71
           ++F Y   Q     N+D GIDM + + IVGPN  GKS L  LL          +R+  +L
Sbjct: 592 VTFGYEG-QKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTRGEMRKNHRL 650

Query: 72  RIGRHSRHLEDLLTMEEAVHAKLR---------------KFGLPGHNHLTPIANLSGGQK 116
           +IG  ++   + L MEE     L+               +FGL  H H   I  LSGGQK
Sbjct: 651 KIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQK 710

Query: 117 VRVMFTLVS------------MYHLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI 158
            RV+F  ++              +LD +SI A+   ++E+ G V++VSHD+RLI
Sbjct: 711 ARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLI 764

Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.

Sus scrofa (taxid: 9823)

>sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2

 Score = 82.8 bits (203), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 37/174 (21%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------VRRRQKL 71
           ++F Y   Q     N+D GIDM + + IVGPN  GKS L  LL          +R+  +L
Sbjct: 630 VTFGYQG-QKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEMRKNHRL 688

Query: 72  RIGRHSRHLEDLLTMEEAVHAKLR---------------KFGLPGHNHLTPIANLSGGQK 116
           +IG  ++   + L MEE     L+               +FGL  H H   I  LSGGQK
Sbjct: 689 KIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQK 748

Query: 117 VRVMFTLVS------------MYHLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI 158
            RV+F  ++              +LD +SI A+   ++E+ G V++VSHD+RLI
Sbjct: 749 ARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLI 802

Isoform 2 is required for efficient Cap- and IRES-mediated mRNA translation initiation. Isoform 2 is not involved in the ribosome biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus GN=Abcf1 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 37/174 (21%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------VRRRQKL 71
           ++F Y   Q     N+D GIDM + + IVGPN  GKS L  LL          +R+  +L
Sbjct: 624 VTFGYEG-QKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGEMRKNHRL 682

Query: 72  RIGRHSRHLEDLLTMEEAVHAKLR---------------KFGLPGHNHLTPIANLSGGQK 116
           +IG  ++   + L MEE     L+               +FGL  H H   I  LSGGQK
Sbjct: 683 KIGFFNQQYAEQLHMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQK 742

Query: 117 VRVMFTLVS------------MYHLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI 158
            RV+F  ++              +LD +SI A+   ++E+ G V++VSHD+RLI
Sbjct: 743 ARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLI 796

Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
255552969	727	ATP-dependent transporter, putative [Ric	0.981	0.213	0.609	5e-52
356548482	720	PREDICTED: ABC transporter F family memb	0.981	0.215	0.609	1e-51
449468287	726	PREDICTED: ABC transporter F family memb	0.981	0.213	0.609	1e-51
356562987	721	PREDICTED: ABC transporter F family memb	0.981	0.214	0.604	1e-51
449488281	726	PREDICTED: ABC transporter F family memb	0.981	0.213	0.609	2e-51
449453119	726	PREDICTED: ABC transporter F family memb	0.981	0.213	0.609	2e-51
52207936	728	ABC transporter [Populus tremula x Popul	0.981	0.212	0.598	8e-51
225463910	731	PREDICTED: ABC transporter F family memb	0.981	0.212	0.598	8e-51
147802383	731	hypothetical protein VITISV_041068 [Viti	0.981	0.212	0.598	9e-51
147770914	731	hypothetical protein VITISV_001188 [Viti	0.981	0.212	0.598	1e-50

>gi|255552969|ref|XP_002517527.1| ATP-dependent transporter, putative [Ricinus communis] gi|223543159|gb|EEF44691.1| ATP-dependent transporter, putative [Ricinus communis]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 130/197 (65%), Gaps = 42/197 (21%)

Query: 3   YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
           +F EPTE T P+LQLIEV SFSYPN +D RLSNVD+GIDMGT VAIVGPN  GKS L NL
Sbjct: 488 HFPEPTELTPPLLQLIEV-SFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNL 546

Query: 63  LA---------VRRRQKLRIGRHSRHLEDLLTM--------------------EEAVHAK 93
           LA         VRR QKLRIGR+S+H  DLLTM                    +EAV AK
Sbjct: 547 LAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAK 606

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
           L KFGLP HNHLTPIA LSGGQK RV+FT +SM             HLD QSI A+A  L
Sbjct: 607 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILMLDEPTNHLDMQSIDALADAL 666

Query: 142 DEFAGGVVLVSHDSRLI 158
           DEF GGVVLVSHDSRLI
Sbjct: 667 DEFTGGVVLVSHDSRLI 683

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548482|ref|XP_003542630.1| PREDICTED: ABC transporter F family member 4-like [Glycine max]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 130/197 (65%), Gaps = 42/197 (21%)

Query: 3   YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
           +F EPTE T P+LQLIEV SFSYPN +D RLSNVD+GIDMGT VAIVGPN  GKS L NL
Sbjct: 481 HFPEPTELTPPLLQLIEV-SFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNL 539

Query: 63  LA---------VRRRQKLRIGRHSRHLEDLLTM--------------------EEAVHAK 93
           LA         VRR QKLRIGR+S+H  DLLTM                    +EAV AK
Sbjct: 540 LAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAK 599

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
           L KFGLP HNHLTPIA LSGGQK RV+FT +SM             HLD QSI A+A  L
Sbjct: 600 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSNPHILLLDEPTNHLDMQSIDALADAL 659

Query: 142 DEFAGGVVLVSHDSRLI 158
           DEF GGVVLVSHDSRLI
Sbjct: 660 DEFTGGVVLVSHDSRLI 676

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468287|ref|XP_004151853.1| PREDICTED: ABC transporter F family member 4-like [Cucumis sativus]

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 120/197 (60%), Positives = 130/197 (65%), Gaps = 42/197 (21%)

Query: 3   YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
           +F EPTE T P+LQLIEV SFSYPN +D RLS+VD+GIDMGT VAIVGPN  GKS L NL
Sbjct: 487 HFPEPTELTPPLLQLIEV-SFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNL 545

Query: 63  LA---------VRRRQKLRIGRHSRHLEDLLTME--------------------EAVHAK 93
           LA         VRR QKLRIGR+S+H  DLLTME                    EAV AK
Sbjct: 546 LAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVQYLLRLHPDQEGLSKQEAVRAK 605

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
           L KFGLP HNHLTPIA LSGGQK RV+FT +SM             HLD QSI A+A  L
Sbjct: 606 LGKFGLPSHNHLTPIAKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 665

Query: 142 DEFAGGVVLVSHDSRLI 158
           DEF GGVVLVSHDSRLI
Sbjct: 666 DEFTGGVVLVSHDSRLI 682

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562987|ref|XP_003549749.1| PREDICTED: ABC transporter F family member 4-like [Glycine max]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/197 (60%), Positives = 130/197 (65%), Gaps = 42/197 (21%)

Query: 3   YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
           +F EPTE T P+LQLIEV SFSYPN +D RLSNVD+GIDMGT VAIVGPN  GKS L NL
Sbjct: 482 HFPEPTELTPPLLQLIEV-SFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNL 540

Query: 63  LA---------VRRRQKLRIGRHSRHLEDLLTM--------------------EEAVHAK 93
           LA         +RR QKLRIGR+S+H  DLLTM                    +EAV AK
Sbjct: 541 LAGDLVPSEGEIRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAK 600

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
           L KFGLP HNHLTPIA LSGGQK RV+FT +SM             HLD QSI A+A  L
Sbjct: 601 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSNPHILLLDEPTNHLDMQSIDALADAL 660

Query: 142 DEFAGGVVLVSHDSRLI 158
           DEF GGVVLVSHDSRLI
Sbjct: 661 DEFTGGVVLVSHDSRLI 677

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488281|ref|XP_004157989.1| PREDICTED: ABC transporter F family member 4-like [Cucumis sativus]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 130/197 (65%), Gaps = 42/197 (21%)

Query: 3   YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
           +F EPTE T P+LQLIEV SFSYPN +D RLS+VD+GIDMGT VAIVGPN  GKS L NL
Sbjct: 487 HFPEPTELTPPLLQLIEV-SFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNL 545

Query: 63  LA---------VRRRQKLRIGRHSRHLEDLLTME--------------------EAVHAK 93
           LA         VRR QKLRIGR+S+H  DLLTME                    EAV AK
Sbjct: 546 LAGDLIPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVQYLLRLHPDQEGLSKQEAVRAK 605

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
           L KFGLP HNHLTPIA LSGGQK RV+FT +SM             HLD QSI A+A  L
Sbjct: 606 LGKFGLPSHNHLTPIAKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 665

Query: 142 DEFAGGVVLVSHDSRLI 158
           DEF GGVVLVSHDSRLI
Sbjct: 666 DEFTGGVVLVSHDSRLI 682

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453119|ref|XP_004144306.1| PREDICTED: ABC transporter F family member 4-like [Cucumis sativus]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/197 (60%), Positives = 130/197 (65%), Gaps = 42/197 (21%)

Query: 3   YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
           +F EPTE T P+LQLIEV SFSYPN +D RLS+VD+GIDMGT VAIVGPN  GKS L NL
Sbjct: 487 HFPEPTELTPPLLQLIEV-SFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNL 545

Query: 63  LA---------VRRRQKLRIGRHSRHLEDLLTME--------------------EAVHAK 93
           LA         VRR QKLRIGR+S+H  DLLTME                    EAV AK
Sbjct: 546 LAGDLIPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVQYLLRLHPDQEGLSKQEAVRAK 605

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
           L KFGLP HNHLTPIA LSGGQK RV+FT +SM             HLD QSI A+A  L
Sbjct: 606 LGKFGLPSHNHLTPIAKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 665

Query: 142 DEFAGGVVLVSHDSRLI 158
           DEF GGVVLVSHDSRLI
Sbjct: 666 DEFTGGVVLVSHDSRLI 682

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52207936|emb|CAE47098.1| ABC transporter [Populus tremula x Populus tremuloides]

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 129/197 (65%), Gaps = 42/197 (21%)

Query: 3   YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
           +F EPTE T P+LQLIEV SFSYPN +D +LSNVD+GIDMGT VAIVGPN  GKS L NL
Sbjct: 489 HFPEPTELTPPLLQLIEV-SFSYPNREDFKLSNVDVGIDMGTRVAIVGPNGAGKSTLLNL 547

Query: 63  LA---------VRRRQKLRIGRHSRHLEDLLTM--------------------EEAVHAK 93
           LA         VRR QKLRIGR+S+H  DLLTM                    +EAV  K
Sbjct: 548 LAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRGK 607

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
           L KFGLP HNHLTPIA LSGGQK RV+FT +SM             HLD QSI A+A  L
Sbjct: 608 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 667

Query: 142 DEFAGGVVLVSHDSRLI 158
           DEF GGVVLVSHDSRLI
Sbjct: 668 DEFTGGVVLVSHDSRLI 684

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463910|ref|XP_002266211.1| PREDICTED: ABC transporter F family member 4-like [Vitis vinifera]

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 130/197 (65%), Gaps = 42/197 (21%)

Query: 3   YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
           +F EPTE T P+LQLIEV SFSYPN +D RLS+VD+GIDMGT VAIVGPN  GKS L NL
Sbjct: 492 HFPEPTELTPPLLQLIEV-SFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNL 550

Query: 63  LA---------VRRRQKLRIGRHSRHLEDLLTM--------------------EEAVHAK 93
           LA         VRR QKLRIGR+S+H  DLLTM                    +EAV AK
Sbjct: 551 LAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAK 610

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
           L KFGLP HNHLTPI  LSGGQK RV+FT +SM             HLD QSI A+A  L
Sbjct: 611 LGKFGLPSHNHLTPIMKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 670

Query: 142 DEFAGGVVLVSHDSRLI 158
           DEF+GGVVLVSHDSRLI
Sbjct: 671 DEFSGGVVLVSHDSRLI 687

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802383|emb|CAN68174.1| hypothetical protein VITISV_041068 [Vitis vinifera]

 Score =  204 bits (519), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 130/197 (65%), Gaps = 42/197 (21%)

Query: 3   YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
           +F EPTE T P+LQLIEV SFSYPN +D RLS+VD+GIDMGT VAIVGPN  GKS L NL
Sbjct: 492 HFPEPTELTPPLLQLIEV-SFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNL 550

Query: 63  LA---------VRRRQKLRIGRHSRHLEDLLTM--------------------EEAVHAK 93
           LA         VRR QKLRIGR+S+H  DLLTM                    +EAV AK
Sbjct: 551 LAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAK 610

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
           L KFGLP HNHLTPI  LSGGQK RV+FT +SM             HLD QSI A+A  L
Sbjct: 611 LGKFGLPSHNHLTPIMKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 670

Query: 142 DEFAGGVVLVSHDSRLI 158
           DEF+GGVVLVSHDSRLI
Sbjct: 671 DEFSGGVVLVSHDSRLI 687

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770914|emb|CAN74169.1| hypothetical protein VITISV_001188 [Vitis vinifera]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 130/197 (65%), Gaps = 42/197 (21%)

Query: 3   YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
           +F EPTE T P+LQLIEV SFSYPN +D RLS+VD+GIDMGT VAIVGPN  GKS L NL
Sbjct: 492 HFPEPTELTPPLLQLIEV-SFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNL 550

Query: 63  LA---------VRRRQKLRIGRHSRHLEDLLTM--------------------EEAVHAK 93
           LA         VRR QKLRIGR+S+H  DLLTM                    +EAV AK
Sbjct: 551 LAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAK 610

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
           L KFGLP HNHLTPI  LSGGQK RV+FT +SM             HLD QSI A+A  L
Sbjct: 611 LGKFGLPSHNHLTPIMKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL 670

Query: 142 DEFAGGVVLVSHDSRLI 158
           DEF+GGVVLVSHDSRLI
Sbjct: 671 DEFSGGVVLVSHDSRLI 687

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:505006397	723	ABCF4 "ATP-binding cassette F4	0.537	0.117	0.673	4.9e-46
UNIPROTKB|F1SSL4	572	ABCF2 "Uncharacterized protein	0.550	0.152	0.302	1.4e-18
UNIPROTKB|Q9UG63	623	ABCF2 "ATP-binding cassette su	0.550	0.139	0.302	1.8e-18
RGD|1304942	627	Abcf2 "ATP-binding cassette, s	0.550	0.138	0.302	1.8e-18
MGI|MGI:1351657	628	Abcf2 "ATP-binding cassette, s	0.550	0.138	0.302	1.8e-18
UNIPROTKB|Q75MJ1	634	ABCF2 "ATP-binding cassette, s	0.550	0.137	0.302	1.8e-18
ZFIN|ZDB-GENE-030131-8714	613	abcf2a "ATP-binding cassette,	0.550	0.141	0.302	3.5e-18
UNIPROTKB|Q2KJA2	625	ABCF2 "ATP-binding cassette su	0.550	0.139	0.302	3.6e-18
UNIPROTKB|F1NIH9	623	ABCF2 "Uncharacterized protein	0.455	0.115	0.380	9.5e-18
UNIPROTKB|H0YGW7	596	ABCF1 "ATP-binding cassette su	0.411	0.109	0.402	2.9e-17

TAIR|locus:505006397 ABCF4 "ATP-binding cassette F4" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 4.9e-46, Sum P(2) = 4.9e-46
 Identities = 64/95 (67%), Positives = 70/95 (73%)

Query:     3 YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
             +F EPTE T P+LQLIEV SFSYPN  D RLSNVD+GIDMGT VAIVGPN  GKS L NL
Sbjct:   484 HFPEPTELTPPLLQLIEV-SFSYPNRPDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNL 542

Query:    63 LA---------VRRRQKLRIGRHSRHLEDLLTMEE 88
             LA         +RR QKLRIGR+S+H  DLLTM E
Sbjct:   543 LAGDLVPTEGEMRRSQKLRIGRYSQHFVDLLTMGE 577

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|F1SSL4 ABCF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 131 (51.2 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
 Identities = 29/96 (30%), Positives = 52/96 (54%)

Query:     1 IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLP 60
             + ++  P     P + +++ +SF Y        +N++ GID+ T VA+VGPN  GKS L 
Sbjct:   330 LSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLL 389

Query:    61 NLLA---------VRRRQKLRIGRHSRHLEDLLTME 87
              LL          +R+   ++IGR+ +HL++ L ++
Sbjct:   390 KLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLD 425

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|Q9UG63 ABCF2 "ATP-binding cassette sub-family F member 2" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 29/96 (30%), Positives = 52/96 (54%)

Query:     1 IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLP 60
             + ++  P     P + +++ +SF Y        +N++ GID+ T VA+VGPN  GKS L 
Sbjct:   381 LSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLL 440

Query:    61 NLLA---------VRRRQKLRIGRHSRHLEDLLTME 87
              LL          +R+   ++IGR+ +HL++ L ++
Sbjct:   441 KLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLD 476

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005740 "mitochondrial envelope" evidence=TAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=TAS

GO:0005215 "transporter activity" evidence=TAS

GO:0006810 "transport" evidence=TAS

RGD|1304942 Abcf2 "ATP-binding cassette, subfamily F (GCN20), member 2" [Rattus norvegicus (taxid:10116)]

 Score = 131 (51.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 29/96 (30%), Positives = 52/96 (54%)

Query:     1 IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLP 60
             + ++  P     P + +++ +SF Y        +N++ GID+ T VA+VGPN  GKS L 
Sbjct:   385 LSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLL 444

Query:    61 NLLA---------VRRRQKLRIGRHSRHLEDLLTME 87
              LL          +R+   ++IGR+ +HL++ L ++
Sbjct:   445 KLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLD 480

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

MGI|MGI:1351657 Abcf2 "ATP-binding cassette, sub-family F (GCN20), member 2" [Mus musculus (taxid:10090)]

 Score = 131 (51.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 29/96 (30%), Positives = 52/96 (54%)

Query:     1 IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLP 60
             + ++  P     P + +++ +SF Y        +N++ GID+ T VA+VGPN  GKS L 
Sbjct:   386 LSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLL 445

Query:    61 NLLA---------VRRRQKLRIGRHSRHLEDLLTME 87
              LL          +R+   ++IGR+ +HL++ L ++
Sbjct:   446 KLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLD 481

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|Q75MJ1 ABCF2 "ATP-binding cassette, sub-family F (GCN20), member 2, isoform CRA_d" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 29/96 (30%), Positives = 52/96 (54%)

Query:     1 IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLP 60
             + ++  P     P + +++ +SF Y        +N++ GID+ T VA+VGPN  GKS L 
Sbjct:   381 LSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLL 440

Query:    61 NLLA---------VRRRQKLRIGRHSRHLEDLLTME 87
              LL          +R+   ++IGR+ +HL++ L ++
Sbjct:   441 KLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLD 476

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-030131-8714 abcf2a "ATP-binding cassette, sub-family F (GCN20), member 2a" [Danio rerio (taxid:7955)]

 Score = 128 (50.1 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
 Identities = 29/96 (30%), Positives = 50/96 (52%)

Query:     1 IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLP 60
             + ++  P     P + +++ +SF Y         N++ GID+ T VA+VGPN  GKS L 
Sbjct:   378 LSFYFPPCGKIPPPVIMVQNVSFRYSENTPYIYKNLEFGIDLDTRVALVGPNGAGKSTLL 437

Query:    61 NLLA---------VRRRQKLRIGRHSRHLEDLLTME 87
              LL          +R+   ++IGR+ +HL + L ++
Sbjct:   438 KLLTGELLPSDGMIRKHSHVKIGRYHQHLTEQLELD 473

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q2KJA2 ABCF2 "ATP-binding cassette sub-family F member 2" [Bos taurus (taxid:9913)]

 Score = 131 (51.2 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
 Identities = 29/96 (30%), Positives = 52/96 (54%)

Query:     1 IKYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLP 60
             + ++  P     P + +++ +SF Y        +N++ GID+ T VA+VGPN  GKS L 
Sbjct:   383 LSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLL 442

Query:    61 NLLA---------VRRRQKLRIGRHSRHLEDLLTME 87
              LL          +R+   ++IGR+ +HL++ L ++
Sbjct:   443 KLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLD 478

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1NIH9 ABCF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 130 (50.8 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query:    87 EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI 134
             +E +   + ++GL G   ++PI NLS GQK RV F  ++              HLD ++I
Sbjct:   493 KEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCFAWLAWQNPHMLFLDEPTNHLDIETI 552

Query:   135 VAVAVTLDEFAGGVVLVSHDSRLI 158
              A+A  +++F GG++LVSHD RLI
Sbjct:   553 DALADAINDFEGGMMLVSHDFRLI 576

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|H0YGW7 ABCF1 "ATP-binding cassette sub-family F member 1" [Homo sapiens (taxid:9606)]

 Score = 125 (49.1 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
 Identities = 31/77 (40%), Positives = 44/77 (57%)

Query:    94 LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
             L +FGL  H H   I  LSGGQK RV+F  ++              +LD +SI A+   +
Sbjct:   477 LGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAI 536

Query:   142 DEFAGGVVLVSHDSRLI 158
             +E+ G V++VSHD+RLI
Sbjct:   537 NEYKGAVIVVSHDARLI 553

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-29
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	1e-19
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	7e-17
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	7e-10
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-09
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	3e-08
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	3e-07
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	1e-06
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	2e-06
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-06
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-06
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	6e-06
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	1e-05
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	1e-05
COG4987	573	COG4987, CydC, ABC-type transport system involved	3e-05
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	5e-05
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	6e-05
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	6e-05
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	7e-05
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	2e-04
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-04
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-04
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-04
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	3e-04
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	4e-04
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	4e-04
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	5e-04
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	5e-04
COG4133	209	COG4133, CcmA, ABC-type transport system involved	5e-04
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	5e-04
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	7e-04
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	8e-04
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	8e-04
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	8e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	9e-04
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	0.001
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	0.001
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	0.001
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	0.001
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	0.001
pfam00005	119	pfam00005, ABC_tran, ABC transporter	0.002
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	0.002
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	0.002
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	0.002
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	0.002
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	0.002
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	0.002
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	0.002
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	0.003
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	0.003
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	0.003
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	0.004

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score =  111 bits (279), Expect = 3e-29
 Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 38/190 (20%)

Query: 6   EPTESTSPMLQL-IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
            P       L L  E +S  Y   + + L ++   ID G  +AIVGPN  GKS L  LLA
Sbjct: 311 PPPGKRLGKLVLEFENVSKGYDGGRLL-LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA 369

Query: 65  ---------VRRRQKLRIGRHSRHLEDLL---------------TMEEAVHAKLRKFGLP 100
                    V+  + ++IG   +H ++L                  E+ V A L +FG  
Sbjct: 370 GELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429

Query: 101 GHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGV 148
           G +   P+  LSGG+K R++   + +             HLD +S+ A+   L +F G V
Sbjct: 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTV 489

Query: 149 VLVSHDSRLI 158
           +LVSHD   +
Sbjct: 490 LLVSHDRYFL 499

Length = 530

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 84.1 bits (208), Expect = 1e-19
 Identities = 64/194 (32%), Positives = 90/194 (46%), Gaps = 40/194 (20%)

Query: 4   FHEPTESTSPMLQLIEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPN 61
           F  PT    P   +I     SF YP    +   N++ GID+ + +A+VGPN  GKS +  
Sbjct: 495 FEFPTPDDRPGPPIISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILK 553

Query: 62  LLA---------VRRRQKLRIGRHSRHLED--------LLTM--------EEAVHAKLRK 96
           L++         V R  K+R+   S+H  D        LL M        E+ + A L  
Sbjct: 554 LISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 613

Query: 97  FGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF 144
           FG+ G+  L P+  LSGGQK RV F  ++              HLD  ++ A+   L  F
Sbjct: 614 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF 673

Query: 145 AGGVVLVSHDSRLI 158
            GGV++VSHD  LI
Sbjct: 674 QGGVLMVSHDEHLI 687

Length = 718

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 72.1 bits (178), Expect = 7e-17
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 55/162 (33%)

Query: 18  IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------VRRR 68
           +E +S +Y   + + L ++ + I+ G  + +VG N  GKS L  L+A         V   
Sbjct: 3   LENLSKTYGG-KLL-LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60

Query: 69  QKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127
             ++IG    + E                             LSGG+K+R+    + +  
Sbjct: 61  STVKIG----YFE----------------------------QLSGGEKMRLALAKLLLEN 88

Query: 128 -----------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI 158
                      HLD +SI A+   L E+ G V+LVSHD   +
Sbjct: 89  PNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 54.8 bits (133), Expect = 7e-10
 Identities = 45/192 (23%), Positives = 64/192 (33%), Gaps = 61/192 (31%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV-------------RR 67
           +SFSYP+     L ++ + I  G  V IVGPN +GKS L  LL               + 
Sbjct: 5   LSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD 64

Query: 68  RQKLRIGRHSRH-----------------LEDLL-----------TMEEAVHAKLRKFGL 99
             KL +    R                   E++             +EE V   L   GL
Sbjct: 65  LTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGL 124

Query: 100 PGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEFA 145
            G         LSGGQK RV   +  +                LD      +   L +  
Sbjct: 125 EGLRD-RSPFTLSGGQKQRV--AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181

Query: 146 G---GVVLVSHD 154
                +++V+HD
Sbjct: 182 AEGKTIIIVTHD 193

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 50/218 (22%), Positives = 77/218 (35%), Gaps = 76/218 (34%)

Query: 12  SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA------- 64
             M+ L  + S +Y +     L NV + ++ G  + +VG N  GKS L  +LA       
Sbjct: 1   MSMITLENL-SLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS 57

Query: 65  --VRRRQKLRIGRHS-------------------RHLEDLLTMEEAVHAK---------- 93
             V R + LR+G  S                     L +LL   E  +A           
Sbjct: 58  GEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLA 117

Query: 94  ---------------------LRKFGLPGHNHLTPIANLSGGQKVRV-----MFTLVSMY 127
                                L   G P  +   P+++LSGG + RV     +     + 
Sbjct: 118 ELEALLEELDGWTLEARAEEALLGLGFPDED--RPVSSLSGGWRRRVALARALLEEPDLL 175

Query: 128 -------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI 158
                  HLD +SI  +   L  + G V++VSHD   +
Sbjct: 176 LLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFL 213

Length = 530

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 40/175 (22%)

Query: 18  IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------VRRR 68
           +E ++  + N       N+++ ++ G  +AI+G N  GK+ L   L          V+  
Sbjct: 322 VENLTKGFDNGP--LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWS 379

Query: 69  QKLRIG----RHSRHLEDLLTM-------------EEAVHAKLRKFGLPGHNHLTPIANL 111
           +   IG     H+   E+ LT+             E+AV   L +      +    +  L
Sbjct: 380 ENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVL 439

Query: 112 SGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHD 154
           SGG+K R++F  + M             H+D +SI ++ + L+++ G ++ VSHD
Sbjct: 440 SGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHD 494

Length = 530

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 46/201 (22%), Positives = 72/201 (35%), Gaps = 63/201 (31%)

Query: 18  IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----KLRI 73
            E +SF Y       L ++ + I  G  VAIVG + +GKS L  LL     +    ++ +
Sbjct: 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLL-GLYKPQQGRILL 532

Query: 74  GRHSRHLEDL-------------------------------LTMEEAVHAKLRKFG---- 98
                +  DL                                T EE + A  +  G    
Sbjct: 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEA-AQLAGAHEF 591

Query: 99  ---LPGHNHLTPI----ANLSGGQKVRVMF--TLVS----------MYHLDTQSIVAVAV 139
              LP   + TP+    ANLSGGQ+ R+     L+S             LD ++   +  
Sbjct: 592 IENLP-MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650

Query: 140 TLDEFAGG--VVLVSHDSRLI 158
            L +   G  V++++H    I
Sbjct: 651 NLLQILQGRTVIIIAHRLSTI 671

Length = 709

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 40/192 (20%)

Query: 4   FHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
           F  P    +P+L++ E +S  Y +   I L ++ + +  G+ + ++G N  GKS L  LL
Sbjct: 302 FRAPESLPNPLLKM-EKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLL 358

Query: 64  A---------VRRRQKLRIGRHSRHLEDLLTMEEA------------VHAKLRK----FG 98
           A         +   + +++G  ++H  + L  +E+            +  KLR     FG
Sbjct: 359 AGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFG 418

Query: 99  LPGHNHLTPIANLSGGQKVRVMFTLV------------SMYHLDTQSIVAVAVTLDEFAG 146
             G          SGG+K R++  L+               HLD     A+   L +F G
Sbjct: 419 FQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG 478

Query: 147 GVVLVSHDSRLI 158
            +V+VSHD  L+
Sbjct: 479 ALVVVSHDRHLL 490

Length = 638

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
          +E +SF YP  +   L NV   I+ G  +AI+GP+ +GKS L  L+ 
Sbjct: 3  VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLIL 49

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 29/156 (18%)

Query: 18  IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHS 77
           IE +SF Y       L NV + +  G  VA+VGPN +GKS L   +A      L+     
Sbjct: 2   IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL----LKPTSGE 55

Query: 78  RHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------- 127
             ++     +  +    R+ G         +  LSGGQ+ RV      +           
Sbjct: 56  ILIDGKDIAKLPLEELRRRIGY--------VPQLSGGQRQRVALARALLLNPDLLLLDEP 107

Query: 128 --HLDTQSIVAVAVTLDEFAGG---VVLVSHDSRLI 158
              LD  S   +   L E A     V++V+HD  L 
Sbjct: 108 TSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 44.3 bits (106), Expect = 3e-06
 Identities = 21/44 (47%), Positives = 26/44 (59%)

Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
          +SFSYP      L +V + I  G  VAIVGP+ +GKS L  LL 
Sbjct: 6  VSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 43.6 bits (104), Expect = 6e-06
 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 21/116 (18%)

Query: 18  IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHS 77
           +E +S  Y       L ++ + I+ G  V I+GPN  GKS L   LA      L+     
Sbjct: 2   VENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA----GLLKPSSGE 55

Query: 78  RHL--EDLLTMEEAVHAK--------LRKFGLPGHNHLT--PIANLSGGQKVRVMF 121
             L  +DL ++     A+        L   GL    HL   P   LSGG++ RV+ 
Sbjct: 56  ILLDGKDLASLSPKELARKIAYVPQALELLGL---AHLADRPFNELSGGERQRVLL 108

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 41/173 (23%), Positives = 64/173 (36%), Gaps = 56/173 (32%)

Query: 34  SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------VR-RRQKLRIGRHSRH---- 79
           S +   ++ G  V I GPN  GK+ L  +LA         V  + + +R  R   H    
Sbjct: 18  SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77

Query: 80  -------LEDLLTMEE---------------AVHAKLRKFGLPGHNHLTPIANLSGGQKV 117
                  ++  LT  E               A+   L + GL G   + P+  LS GQ+ 
Sbjct: 78  YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-PVRQLSAGQQR 136

Query: 118 RVMFTLVSMYH--------------LDTQSIVAVAVTLDEFA--GG-VVLVSH 153
           RV   L  ++               +D Q +  +   L + A  GG V+L +H
Sbjct: 137 RV--ALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187

Length = 204

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 47/207 (22%), Positives = 74/207 (35%), Gaps = 65/207 (31%)

Query: 14  MLQLIEVISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA-------- 64
           M++L  V        + +  L +V++ I+ G  VAIVGP+ +GKS L NLL         
Sbjct: 1   MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60

Query: 65  -------------VRRRQKLR---IG----RHSRHLEDLLT------------------M 86
                         +   KLR   IG        +L   LT                   
Sbjct: 61  EVLINGKDLTKLSEKELAKLRRKKIGFVFQNF--NLLPDLTVLENVELPLLIAGKSAGRR 118

Query: 87  EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYH------------LDTQS- 133
           + A    L   GL         + LSGGQ+ RV      + +            LD+++ 
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178

Query: 134 --IVAVAVTL-DEFAGGVVLVSHDSRL 157
             ++ +   L  E    +++V+HD  L
Sbjct: 179 KEVLELLRELNKERGKTIIMVTHDPEL 205

Length = 226

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 5   HEPTESTSPMLQLIEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNL 62
             P E T+   Q +E+  +SF+YP  Q   L N ++ +  G  VAI+G + +GKS L  L
Sbjct: 324 TFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQL 383

Query: 63  LA 64
           LA
Sbjct: 384 LA 385

Length = 573

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 45/150 (30%)

Query: 14  MLQLIEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA------- 64
           M+++IEV  ++  Y   +   L  V   ++ G    ++GPN  GK+ L  +LA       
Sbjct: 1   MIEVIEVRNLTKKYGGDKTA-LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS 59

Query: 65  ----------VRRRQKLR--IG---RHSRHLEDLLTMEEAV--HAKLRK----------- 96
                     V+   K+R  IG   +      + LT+ E +   A+L             
Sbjct: 60  GEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPE-LTVRENLEFFARLYGLSKEEAEERIE 118

Query: 97  -----FGLPGHNHLTPIANLSGGQKVRVMF 121
                FGL    +   +  LSGG K R+  
Sbjct: 119 ELLELFGLEDKAN-KKVRTLSGGMKQRLSI 147

Length = 293

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 35/148 (23%), Positives = 51/148 (34%), Gaps = 44/148 (29%)

Query: 14  MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV-------- 65
            +   E +SF YP  +   L +V + I+ G  V ++GPN +GKS L  LL          
Sbjct: 2   RMIEAENLSFRYPG-RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60

Query: 66  ------RRRQKLRIGRHSRH-----------------LEDLLT-----------MEEAVH 91
                     +  +    +                   +++             +EE V 
Sbjct: 61  VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA 120

Query: 92  AKLRKFGLPGHNHLTPIANLSGGQKVRV 119
             L   GL       P  NLSGGQK RV
Sbjct: 121 EALELVGLEELLD-RPPFNLSGGQKQRV 147

Length = 235

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 49/196 (25%), Positives = 66/196 (33%), Gaps = 62/196 (31%)

Query: 18  IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL-------------- 63
              +S +YP  +   L  V   +  G  VA+VGP+  GKS L NLL              
Sbjct: 324 FSGVSVAYPG-RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVN 382

Query: 64  ---------AVRRRQKLRIGRHSRHLEDLLT--------------MEEAVH-AKLRKF-- 97
                       R Q   + +H       +               + EA+  A L +F  
Sbjct: 383 GVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVA 442

Query: 98  GLPGHNHLTPI----ANLSGGQKVRVMFTLVSMY-------------HLDTQSIVAVAVT 140
            LP     TPI    A LSGGQ  R+                     HLD ++   V   
Sbjct: 443 ALPQGLD-TPIGEGGAGLSGGQAQRLALARA-FLRDAPLLLLDEPTAHLDAETEAEVLEA 500

Query: 141 LDEFAGG--VVLVSHD 154
           L   A G  V+LV+H 
Sbjct: 501 LRALAQGRTVLLVTHR 516

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
          +E +SFSYPN ++  L NV   I+ G  VAI+G N +GKS +  +L 
Sbjct: 10 VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILT 56

Length = 271

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 6   EPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
               +    L L  V SF+YP+     L  + + I  G  VA++G    GKS L  LL 
Sbjct: 330 STAAADQVSLTLNNV-SFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387

Length = 574

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 34/137 (24%), Positives = 50/137 (36%), Gaps = 38/137 (27%)

Query: 18  IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA-----------VR 66
           IE +S S+  +    L ++++ ++ G  VAI+GP+  GKS L  L+A           + 
Sbjct: 6   IEGVSKSFGGV--EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63

Query: 67  RRQKLRIGRHSRHL--EDLL----------------------TMEEAVHAKLRKFGLPGH 102
            R     G    ++  ED L                         E     L   GL G 
Sbjct: 64  GRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGF 123

Query: 103 NHLTPIANLSGGQKVRV 119
               P   LSGG + RV
Sbjct: 124 EDKYP-HQLSGGMRQRV 139

Length = 248

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 22/44 (50%), Positives = 27/44 (61%)

Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
          +SFSYPN +   L NV + I  G  VAI+G   +GKS L  LLA
Sbjct: 8  VSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA 51

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 48/153 (31%)

Query: 14  MLQLIEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPL------------ 59
           M+ +IEV  ++ SY   + + L ++ + ++ G   A++GPN  GKS L            
Sbjct: 1   MMPMIEVENLTVSY-GNRPV-LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS 58

Query: 60  -----PNLLAVRRRQKLRIGRHSRHL----------EDLLTM----------------EE 88
                      +RR++LRIG   +            +D++ +                +E
Sbjct: 59  GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118

Query: 89  AVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMF 121
            V   L + G+        I  LSGGQK RV+ 
Sbjct: 119 KVDEALERVGMEDLRD-RQIGELSGGQKQRVLL 150

Length = 254

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 40/136 (29%)

Query: 25  YPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA-----------VR----RRQ 69
           Y       + ++ + +  G    ++G N  GK+    +L            +     R  
Sbjct: 10  YKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD 69

Query: 70  KLRIGRH------SRHLEDLLTMEE------------------AVHAKLRKFGLPGHNHL 105
           +    +          L D LT+ E                   V   LR  GL    + 
Sbjct: 70  RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN- 128

Query: 106 TPIANLSGGQKVRVMF 121
                LSGG K ++  
Sbjct: 129 KRARTLSGGMKRKLSL 144

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 59/194 (30%)

Query: 18  IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA------------- 64
           IE ISFSY    +I L ++ + +  G  +A+ G N  GK+ L  +LA             
Sbjct: 2   IENISFSYKKGTEI-LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60

Query: 65  -----VRRRQKLRIGRHSRHLEDLLTME-----------------EAVHAKLRKFGLPGH 102
                 + R+K  IG   + ++  L  +                 E     L+   L   
Sbjct: 61  GKPIKAKERRK-SIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL 119

Query: 103 NHLTPIANLSGGQKVRVMFTLVSMYH---------------LDTQSIVAVAVTLDEFAG- 146
               P++ LSGGQK R+    ++                  LD +++  V   + E A  
Sbjct: 120 KERHPLS-LSGGQKQRL---AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175

Query: 147 --GVVLVSHDSRLI 158
              V++++HD   +
Sbjct: 176 GKAVIVITHDYEFL 189

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 16 QLIEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
          ++I V  ISF YP+     L +V   +  G  VAIVG N +GKS L  LL
Sbjct: 4  EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLL 53

Length = 279

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
          ++F YP      L ++ + I  G  VA+VGP+ +GKS L NL+
Sbjct: 6  VTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI 48

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 40/178 (22%), Positives = 63/178 (35%), Gaps = 57/178 (32%)

Query: 33  LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------VR------RRQKLRIGRHS 77
           L +V   +  G  +AIVGPN  GKS L   +          +R       +++ RIG   
Sbjct: 15  LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVP 74

Query: 78  RHLE----------DLLTM----------------EEAVHAKLRKFGLPGHNHLTPIANL 111
           +             D++ M                +  V   L + GL        I  L
Sbjct: 75  QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-RQIGEL 133

Query: 112 SGGQKVRVMF--TLVS---MYHL-------DTQSIVAVAVTLDEFAG---GVVLVSHD 154
           SGGQ+ RV+    LV    +  L       D ++   +   L E       +++V+HD
Sbjct: 134 SGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHD 191

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 37/128 (28%)

Query: 28  LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------VR-RRQKLRIGRHS 77
            +    S++   ++ G  + I GPN  GK+ L  +LA         V  + + ++  R S
Sbjct: 13  GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES 72

Query: 78  RH-----------LEDLLTMEE---------------AVHAKLRKFGLPGHNHLTPIANL 111
            H           ++  LT  E                +   L + GL G   L P+  L
Sbjct: 73  YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL-PVGQL 131

Query: 112 SGGQKVRV 119
           S GQ+ RV
Sbjct: 132 SAGQQRRV 139

Length = 209

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 47/150 (31%), Positives = 65/150 (43%), Gaps = 50/150 (33%)

Query: 18  IEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL------------ 63
           IEV  ++F Y     + L +V + I+ G  VAIVGP+ +GKS L  LL            
Sbjct: 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511

Query: 64  ------------AVRRR-----QKLRIGRHSRHLEDL-----LTMEEAVHAKLRKFGL-- 99
                       AVRR+     Q  R+   S   E++     LT++EA  A  R  GL  
Sbjct: 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSI-FENIAGGAPLTLDEAWEA-ARMAGLAE 569

Query: 100 -----PGHNHLTPIA----NLSGGQKVRVM 120
                P   H T I+     LSGGQ+ R++
Sbjct: 570 DIRAMPMGMH-TVISEGGGTLSGGQRQRLL 598

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 9/50 (18%)

Query: 18 IEVISFSY----PNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
           E ++FSY    P L+DI  S     I  G  VAIVGP   GK+ L NLL
Sbjct: 5  FENVNFSYDEKKPVLKDINFS-----IKPGETVAIVGPTGAGKTTLINLL 49

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 18/82 (21%)

Query: 85  TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT--LVS---MY-------HLDTQ 132
            +E A+ A LR    P  +    +  LSGG++ RV     L+S   M        HLD +
Sbjct: 142 KLEIAMDA-LR---CPPWD--ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE 195

Query: 133 SIVAVAVTLDEFAGGVVLVSHD 154
           S+  +   L E+ G VV V+HD
Sbjct: 196 SVAWLEQHLQEYPGTVVAVTHD 217

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 33  LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---VRRRQKLRIG--RHSRHLEDLLTME 87
           L++V + I+ G  VA++GP+ +GKS L   +A         + I     +   ++L  + 
Sbjct: 16  LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75

Query: 88  EAVHAKLRKFGLPGHNHLTPIAN----LSGGQKVRV 119
             +    + F L    HLT + N    LSGGQ+ RV
Sbjct: 76  RRIGMVFQDFALF--PHLTVLENIALGLSGGQQQRV 109

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 38/123 (30%)

Query: 33  LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA----------------------VRRRQK 70
              +   ++ G  + + GPN  GK+ L  +LA                         R  
Sbjct: 16  FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNI 75

Query: 71  LRIGRHSRHLEDLLTMEE--------------AVHAKLRKFGLPGHNHLTPIANLSGGQK 116
           L +G H   L+  L+  E               +   L   GL G   L P A LS GQ+
Sbjct: 76  LYLG-HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-PAAQLSAGQQ 133

Query: 117 VRV 119
            R+
Sbjct: 134 RRL 136

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
           +SFSYP  + + L ++   I+ G  VAIVGP+ +GKS L  LL 
Sbjct: 334 VSFSYPGKKPV-LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL 376

Length = 567

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
           ML  +  +S SY       L +V + I  G  V ++GP+  GK+ L NL+A
Sbjct: 2  CMLN-VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIA 52

Length = 259

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 12  SPMLQLIEV--ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
             +  LIE   +SFSYPN  D+  L  +   +  G  VA+VGP+ +GKS +  LL
Sbjct: 473 LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALL 527

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
           ++F YP      L ++ + I+ G  VA+VG + +GKS L NL+
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 2  KYFHEPTE-STSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLP 60
          K F    E S S   +L  +        +   L ++   I  G  V I+G N  GKS L 
Sbjct: 11 KKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLL 70

Query: 61 NLLA 64
           L+A
Sbjct: 71 KLIA 74

Length = 249

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 70/203 (34%)

Query: 14  MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR----- 68
           M+  IE +S SY   + + L +V + I  G   +I+GPN  GKS L ++++   +     
Sbjct: 1   MIT-IENVSKSYGT-KVV-LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE 57

Query: 69  -----------------QKLRIGRHSRHLEDLLTMEEAVHAKLRKFG-LPGHN------- 103
                            +KL I +   H+   LT+ + V      FG  P          
Sbjct: 58  ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLV-----GFGRFPYSQGRLTKED 112

Query: 104 -----------HLTPIAN-----LSGGQKVRVMFTLV------------SMYHLDTQSIV 135
                      HL  +++     LSGGQ+ R    +V             + +LD +  V
Sbjct: 113 RRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSV 172

Query: 136 AVAVTL----DEFAGGVVLVSHD 154
            +   L    DE    +V+V HD
Sbjct: 173 QIMKILRRLADELGKTIVVVLHD 195

Length = 252

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 68  RQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMF 121
           R+ L  G   +  +            L + GLP      P+  LSGGQK RV  
Sbjct: 54  RENLFFGLRDKEADAR------AEEALERVGLPDFLDREPVGTLSGGQKQRVAI 101

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 21 ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
          ++F+YP   D   L +V   +  G   A+VGP+ +GKS +  LL
Sbjct: 17 VTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALL 60

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 53/186 (28%), Positives = 68/186 (36%), Gaps = 63/186 (33%)

Query: 33  LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------VR------------RRQKL 71
           L  V++ +  G  VAIVGP+ +GKS L  +LA         VR             R  L
Sbjct: 26  LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85

Query: 72  RIGRH------SRHLEDLLTMEEAV------------------HAKLRKFGLPGHNHLTP 107
           R  RH      S HL   LT  E V                   A L   GL       P
Sbjct: 86  R-ARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP 144

Query: 108 IANLSGGQKVRV------------MFTLVSMYHLDTQSIVAVAVTL----DEFAGGVVLV 151
            A LSGG++ RV            +F      +LD  +   +A  L     E    +VLV
Sbjct: 145 -AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLV 203

Query: 152 SHDSRL 157
           +HD +L
Sbjct: 204 THDPQL 209

Length = 228

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
           ++F+YP  +   L N++  I  G  VA+VG + +GKS + NLL
Sbjct: 347 VTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLL 389

Length = 582

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
          ++F+Y   + + L +V   I  G  VAIVGP+ +GKS +  LL
Sbjct: 6  VTFAYDPGRPV-LKDVSFTIPAGKKVAIVGPSGSGKSTILRLL 47

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 6   EPTESTS------PMLQ---LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGK 56
            PTE  S      P L+     E I F Y       LSN+++ I  G  + IVGP+ +GK
Sbjct: 437 SPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGK 496

Query: 57  SPLPNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRK 96
           S L  LL     Q+L   +H + L D + +  A  A LR+
Sbjct: 497 STLTKLL-----QRLYTPQHGQVLVDGVDLAIADPAWLRR 531

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 40/140 (28%)

Query: 18  IEVISFSYPNLQDIR--LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------VR 66
           +  +S +Y         L ++ + ++ G  VA+VGP+  GKS L  ++A         V 
Sbjct: 3   VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL 62

Query: 67  RRQKLRIGRHSRHL-----EDLL----------------------TMEEAVHAKLRKFGL 99
              +  +            +D L                         E     L   GL
Sbjct: 63  VDGE-PVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGL 121

Query: 100 PGHNHLTPIANLSGGQKVRV 119
            G  +  P   LSGG + RV
Sbjct: 122 SGFENAYP-HQLSGGMRQRV 140

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 39/151 (25%), Positives = 54/151 (35%), Gaps = 51/151 (33%)

Query: 18  IEV--ISFSYPNLQDIR--LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA--------- 64
           IE+  +S +Y    +    L  V + I+ G  VAIVGP+ +GKS L N+L          
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 65  ------------VRRRQKLRIGRH------SRHLEDLLT------------------MEE 88
                        +     R  RH      S +L   LT                    E
Sbjct: 61  VRVDGTDISKLSEKELAAFR-RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRE 119

Query: 89  AVHAKLRKFGLPGHNHLTPIANLSGGQKVRV 119
                L + GL    +  P + LSGGQ+ RV
Sbjct: 120 RAEELLERVGLGDRLNHYP-SELSGGQQQRV 149

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 36.3 bits (85), Expect = 0.003
 Identities = 40/135 (29%), Positives = 51/135 (37%), Gaps = 53/135 (39%)

Query: 33  LSNVDMGIDMGTCVAIVGPNDTGKSPL---------PN------------------LLAV 65
           L  VD+ +  G  +AI+GP+ +GKS L         P+                  L  +
Sbjct: 16  LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75

Query: 66  RRR-----QK----------------LRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNH 104
           RRR     Q                 LR   H+R  E+ +   E V  KL   GL G   
Sbjct: 76  RRRMGMLFQSGALFDSLTVFENVAFPLR--EHTRLSEEEIR--EIVLEKLEAVGLRGAED 131

Query: 105 LTPIANLSGGQKVRV 119
           L P A LSGG K RV
Sbjct: 132 LYP-AELSGGMKKRV 145

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 42/157 (26%), Positives = 52/157 (33%), Gaps = 51/157 (32%)

Query: 33  LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-----LRIGRHSRHLEDL---- 83
           L NV      G   AI+GP+  GKS L N LA RR        + I              
Sbjct: 25  LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKII 84

Query: 84  ------------LTMEEA--VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT--LVS-- 125
                       LT+ E     AKLR               LSGG++ RV     LVS  
Sbjct: 85  GYVPQDDILHPTLTVRETLMFAAKLR--------------GLSGGERKRVSIALELVSNP 130

Query: 126 --------MYHLDTQSIVAVAVTLDEFA--GGVVLVS 152
                      LD+ S + V   L   A  G  ++ S
Sbjct: 131 SLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 35.8 bits (84), Expect = 0.003
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 22/116 (18%)

Query: 18  IEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR 72
           IEV  +S  Y       L ++ + ++ G    ++GPN  GK+ L  ++    +    +++
Sbjct: 1   IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58

Query: 73  IGRHSRHLEDLLTMEEAVHAKLRKFG-LPGHN----HLTPIANL--SGGQKVRVMF 121
           +            +++      R+ G LP       +LT   NL  SGG K R+  
Sbjct: 59  VLGKD--------IKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLAL 106

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
           ML++ E +SF Y       L ++   I  G    I+GPN +GKS L   LA
Sbjct: 1  MMLEV-ENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLA 49

Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.98
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.97
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.97
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.97
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.97
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.97
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.97
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.97
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.97
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.97
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.97
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.97
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.97
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.97
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.97
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.97
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.97
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.97
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.97
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.97
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.97
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.96
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.96
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.96
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.96
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.96
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.96
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.96
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.96
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.96
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.96
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.96
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.96
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.96
COG1123	539	ATPase components of various ABC-type transport sy	99.96
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.96
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.96
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.96
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.96
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.96
COG4181	228	Predicted ABC-type transport system involved in ly	99.96
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.96
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.96
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.96
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.96
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.96
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.96
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.96
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
COG0488	530	Uup ATPase components of ABC transporters with dup	99.96
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.96
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.96
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.96
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.96
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.96
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.96
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.96
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.96
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.96
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.96
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.96
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.96
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.96
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.96
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.96
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.96
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.96
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.96
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.96
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.96
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.96
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.96
PRK11147	635	ABC transporter ATPase component; Reviewed	99.96
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.96
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.96
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.96
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.96
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.96
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.96
COG0488	530	Uup ATPase components of ABC transporters with dup	99.96
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.96
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.96
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK10908	222	cell division protein FtsE; Provisional	99.96
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.96
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.96
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.96
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.96
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.96
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.96
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.96
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.96
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.96
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.96
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.96
COG1123	539	ATPase components of various ABC-type transport sy	99.96
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.96
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.96
PLN03073	718	ABC transporter F family; Provisional	99.96
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.96
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.96
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.96
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.96
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.96
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.96
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.96
PRK10938	490	putative molybdenum transport ATP-binding protein	99.96
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.96
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.96
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.96
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.96
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.96
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.96
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.96
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.95
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.95
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.95
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.95
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.95
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.95
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.95
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.95
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.95
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.95
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.95
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.95
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.95
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK10938	490	putative molybdenum transport ATP-binding protein	99.95
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.95
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.95
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.95
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.95
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.95
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.95
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.95
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.95
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.95
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.95
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.95
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.95
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.95
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.95
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.95
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.95
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.95
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.95
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.95
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.95
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.95
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.95
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.95
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.95
PRK11147	635	ABC transporter ATPase component; Reviewed	99.95
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.95
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.95
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.95
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.95
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.95
PLN03073	718	ABC transporter F family; Provisional	99.95
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.95
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.95
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.95
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.95
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.95
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.95
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.95
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.95
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.95
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.95
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.95
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.95
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.95
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.95
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.95
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.95
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.95
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.95
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.95
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.95
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.95
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.95
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.95
COG4559	259	ABC-type hemin transport system, ATPase component	99.94
PRK13409	590	putative ATPase RIL; Provisional	99.94
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.94
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.94
COG4987	573	CydC ABC-type transport system involved in cytochr	99.94
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.94
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.94
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.94
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.94
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.94
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.94
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.94
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.94
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.94
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.94
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.94
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.94
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.94
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.94
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.94
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.94
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.94
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.94
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.94
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.94
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.94
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.94
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.94
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.94
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.94
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.94
cd03246	173	ABCC_Protease_Secretion This family represents the	99.94
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.94
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.94
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.94
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.94
COG4988	559	CydD ABC-type transport system involved in cytochr	99.94
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.94
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.94
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.94
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.94
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.94
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.94
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.94
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.94
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.94
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.93
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.93
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.93
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.93
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.93
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.93
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.93
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.93
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.93
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.93
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.93
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.93
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.93
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.93
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.93
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.93
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.93
PRK13409	590	putative ATPase RIL; Provisional	99.93
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.93
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.93
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.93
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.93
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.93
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.93
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.93
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.93
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.93
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.92
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.92
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.92
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.92
COG4172	534	ABC-type uncharacterized transport system, duplica	99.92
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.92
COG4172	534	ABC-type uncharacterized transport system, duplica	99.92
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.92
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.92
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.92
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.92
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.92
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.92
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.92
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.92
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.92
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.92
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.92
PLN03211	659	ABC transporter G-25; Provisional	99.91
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.91
PLN03232	1495	ABC transporter C family member; Provisional	99.91
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.91
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.91
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.91
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.91
PLN03130	1622	ABC transporter C family member; Provisional	99.91
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.91
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.91
PTZ00243	1560	ABC transporter; Provisional	99.91
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.91
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.91
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.9
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.9
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.9
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.9
PLN03232	1495	ABC transporter C family member; Provisional	99.89
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.89
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.89
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.89
PLN03130	1622	ABC transporter C family member; Provisional	99.89
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.89
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.89
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.89
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.89
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.89
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.88
KOG0062	582	consensus ATPase component of ABC transporters wit	99.88
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.88
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.88
PLN03140	1470	ABC transporter G family member; Provisional	99.88
PTZ00243	1560	ABC transporter; Provisional	99.86
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.86
KOG0062	582	consensus ATPase component of ABC transporters wit	99.86
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.85
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.85
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.85
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.85
PLN03140	1470	ABC transporter G family member; Provisional	99.85
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.85
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.84
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.83
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.82
COG4178	604	ABC-type uncharacterized transport system, permeas	99.82
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.82
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.81
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.81
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.79
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.79
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.79
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.79
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.78
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.77
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.77
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.76
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.74
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.74
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.74
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.74
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.73
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.73
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.72
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.71
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.7
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.69
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.65
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.65
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.59
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.59
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.59
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.53
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.53
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.53
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.53
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.52
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.5
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.49
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.42
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.42
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.38
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.33
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.32
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.26
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.25
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.23
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.22
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.2
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.15
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.09
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.08
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.03
PRK00064	361	recF recombination protein F; Reviewed	99.02
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.01
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.01
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.96
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.94
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.92
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.9
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.82
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.82
cd01128	249	rho_factor Transcription termination factor rho is	98.8
COG3910	233	Predicted ATPase [General function prediction only	98.75
PRK13695	174	putative NTPase; Provisional	98.74
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.69
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.68
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.62
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.59
TIGR00767	415	rho transcription termination factor Rho. Members	98.57
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.52
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.52
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	98.51
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.49
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.46
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.45
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.44
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.41
PRK09825	176	idnK D-gluconate kinase; Provisional	98.41
PRK06067	234	flagellar accessory protein FlaH; Validated	98.4
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.37
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	98.36
PRK00300	205	gmk guanylate kinase; Provisional	98.34
PRK08149	428	ATP synthase SpaL; Validated	98.34
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.3
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.27
PRK05922	434	type III secretion system ATPase; Validated	98.27
COG3950	440	Predicted ATP-binding protein involved in virulenc	98.24
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.24
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.22
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.22
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.21
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.21
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	98.21
PHA02562	562	46 endonuclease subunit; Provisional	98.21
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.19
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.18
PRK06936	439	type III secretion system ATPase; Provisional	98.18
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.17
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.16
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	98.15
PRK09099	441	type III secretion system ATPase; Provisional	98.14
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.14
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.14
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.13
PLN02796	347	D-glycerate 3-kinase	98.13
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.13
PRK05480	209	uridine/cytidine kinase; Provisional	98.13
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.12
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.11
PRK15494	339	era GTPase Era; Provisional	98.1
PRK06315	442	type III secretion system ATPase; Provisional	98.08
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.07
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.06
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.06
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.05
PRK06820	440	type III secretion system ATPase; Validated	98.05
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.05
TIGR00611	365	recf recF protein. All proteins in this family for	98.04
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	98.04
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	98.04
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.04
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.04
PRK10869	553	recombination and repair protein; Provisional	98.04
PRK09183	259	transposase/IS protein; Provisional	98.03
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.02
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.02
PRK02224	880	chromosome segregation protein; Provisional	98.0
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.0
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.0
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.0
smart00382	148	AAA ATPases associated with a variety of cellular	97.99

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-36  Score=222.63  Aligned_cols=141  Identities=25%  Similarity=0.368  Sum_probs=109.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------cee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~   72 (158)
                      |+++.++ +++|+..  .+|++||++|.+||+++|+||||||||||+|+|.+....                     +..
T Consensus         2 mi~i~~l-~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~   78 (240)
T COG1126           2 MIEIKNL-SKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK   78 (240)
T ss_pred             eEEEEee-eEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence            5566666 8888754  589999999999999999999999999999999853211                     112


Q ss_pred             eeccccch--hhHhh-------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           73 IGRHSRHL--EDLLT-------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        73 ~~~~~~~~--~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      +|.++|.+  ++.++                   .++.+.++|+++|+.+..+. ++.+|||||||||+||||+..    
T Consensus        79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-yP~qLSGGQqQRVAIARALaM~P~v  157 (240)
T COG1126          79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA-YPAQLSGGQQQRVAIARALAMDPKV  157 (240)
T ss_pred             cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-CccccCcHHHHHHHHHHHHcCCCCE
Confidence            44444432  11111                   23667889999999988775 558999999999999999865    


Q ss_pred             --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI  158 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~  158 (158)
                              .|||+...++++.++++   +.|+|+|||++.|+
T Consensus       158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA  199 (240)
T COG1126         158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA  199 (240)
T ss_pred             EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH
Confidence                    69999998888777654   57999999999763

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.3e-36  Score=227.06  Aligned_cols=141  Identities=29%  Similarity=0.475  Sum_probs=113.8

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-----------------cceeeec
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-----------------QKLRIGR   75 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-----------------~~~~~~~   75 (158)
                      +++++.++ +++|.+.  ++|+||||++++|++++|+||||||||||+|++.+...                 ...++||
T Consensus         3 ~~i~v~nl-~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY   79 (254)
T COG1121           3 PMIEVENL-TVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY   79 (254)
T ss_pred             cEEEEeee-EEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence            45666666 9999865  48999999999999999999999999999999997321                 1246888


Q ss_pred             cccchh----------hHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           76 HSRHLE----------DLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        76 ~~~~~~----------~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ++|...          +..                ...+.+.++|+.+|+.+..+ +++.+|||||+|||.||||++.  
T Consensus        80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-r~i~~LSGGQ~QRV~lARAL~~~p  158 (254)
T COG1121          80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-RQIGELSGGQKQRVLLARALAQNP  158 (254)
T ss_pred             cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-CcccccCcHHHHHHHHHHHhccCC
Confidence            887421          111                01377899999999997665 7889999999999999999875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                                ++|+.++..+.++|+++   ++||++||||++.
T Consensus       159 ~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~  201 (254)
T COG1121         159 DLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL  201 (254)
T ss_pred             CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH
Confidence                      68999998888888655   5799999999864

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.9e-36  Score=223.57  Aligned_cols=139  Identities=29%  Similarity=0.331  Sum_probs=105.0

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------ceeeeccccc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------KLRIGRHSRH   79 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------~~~~~~~~~~   79 (158)
                      +.+.++ ++.|+.  ..+|+|+||+|.+||+++|+||||||||||+|+++|....               ...+++.+|.
T Consensus         4 l~i~~v-~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~   80 (248)
T COG1116           4 LEIEGV-SKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE   80 (248)
T ss_pred             EEEEee-EEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence            444444 888876  4689999999999999999999999999999999975321               1123444443


Q ss_pred             h--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538           80 L--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------  127 (158)
Q Consensus        80 ~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------  127 (158)
                      .  .+..+                  ..+++.++++.+|+.+..+. ++++|||||||||+||||++.            
T Consensus        81 ~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~-~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg  159 (248)
T COG1116          81 DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDK-YPHQLSGGMRQRVAIARALATRPKLLLLDEPFG  159 (248)
T ss_pred             CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhc-CccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            1  11111                  13568889999999987774 569999999999999999875            


Q ss_pred             CCCHHHHHHHHH----HHhhcCCeEEEEeecCCC
Q 044538          128 HLDTQSIVAVAV----TLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 ~lD~~~~~~l~~----~l~~~~~tvi~vtHd~~~  157 (158)
                      .||..++..+.+    +.++.+.||++||||.++
T Consensus       160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E  193 (248)
T COG1116         160 ALDALTREELQDELLRLWEETRKTVLLVTHDVDE  193 (248)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence            588877665554    445667899999999865

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.9e-35  Score=219.00  Aligned_cols=142  Identities=32%  Similarity=0.407  Sum_probs=107.7

Q ss_pred             hhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------------------------
Q 044538           15 LQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------------------------   68 (158)
Q Consensus        15 l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------------------------   68 (158)
                      +++.++ .+.|..+.  ..+|+++||+|++||+++|+||||||||||++++.+...                        
T Consensus         2 i~~~~v-~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~   80 (226)
T COG1136           2 IELKNV-SKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL   80 (226)
T ss_pred             cEEeee-EEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence            344555 77775432  368999999999999999999999999999999985321                        


Q ss_pred             cceeeeccccch--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           69 QKLRIGRHSRHL--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        69 ~~~~~~~~~~~~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                      .+..+|+.+|.+  .+.++                  ..+.+..+++.+|+.+...++++.+|||||||||+||||++. 
T Consensus        81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~  160 (226)
T COG1136          81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN  160 (226)
T ss_pred             HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence            122356555542  11111                  234566788899998766656779999999999999999875 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                 +||.++...+++.+.+.    +.|+|+||||.+.
T Consensus       161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~l  205 (226)
T COG1136         161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL  205 (226)
T ss_pred             CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence                       69999999999988765    4699999999753

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=2.1e-35  Score=212.21  Aligned_cols=141  Identities=26%  Similarity=0.383  Sum_probs=111.3

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------c
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------K   70 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~   70 (158)
                      |+.+.++ +++|+++ .++|+||||+|++||++.|+||||||||||+|+|......                       +
T Consensus         1 mI~f~~V-~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR   78 (223)
T COG2884           1 MIRFENV-SKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR   78 (223)
T ss_pred             Ceeehhh-hhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence            4566777 9999988 5699999999999999999999999999999999853221                       1


Q ss_pred             eeeeccccchh--------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           71 LRIGRHSRHLE--------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        71 ~~~~~~~~~~~--------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      ..+|.++|++.        ++.            ...+++.++|+++|+.+..+. -+.+|||||||||+||||+..   
T Consensus        79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~-lP~~LSGGEQQRvaIARAiV~~P~  157 (223)
T COG2884          79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA-LPSQLSGGEQQRVAIARAIVNQPA  157 (223)
T ss_pred             heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhc-CccccCchHHHHHHHHHHHccCCC
Confidence            23555555421        111            124778899999999887764 458999999999999999765   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                               +||+....++++++.++   +.|||+.|||.++
T Consensus       158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l  199 (223)
T COG2884         158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL  199 (223)
T ss_pred             eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH
Confidence                     79999988888887665   5799999999754

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-35  Score=218.87  Aligned_cols=141  Identities=23%  Similarity=0.314  Sum_probs=107.7

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------------------cceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------------------QKLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------------------~~~~~   73 (158)
                      |+++.++ ++.|.+.  .+++|+||+|++||+++++|||||||||++++|.....                    -+..+
T Consensus         1 MI~~~nv-sk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I   77 (309)
T COG1125           1 MIEFENV-SKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI   77 (309)
T ss_pred             Cceeeee-ehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence            4566676 8888853  58999999999999999999999999999999984211                    12345


Q ss_pred             eccccc--hhhHh------------------hHHHHHHHHHHHcCCCC-CCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           74 GRHSRH--LEDLL------------------TMEEAVHAKLRKFGLPG-HNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        74 ~~~~~~--~~~~~------------------~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      ||.-|.  +++.+                  ...+++.++++.+|+++ ...++++++|||||+|||.+|||+..     
T Consensus        78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il  157 (309)
T COG1125          78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL  157 (309)
T ss_pred             hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence            554432  11111                  23467889999999986 23446679999999999999998765     


Q ss_pred             -------CCCHHHHHHHHHHHh----hcCCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLD----EFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~----~~~~tvi~vtHd~~~  157 (158)
                             .|||-++..+.+.+.    +++.||||||||+++
T Consensus       158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidE  198 (309)
T COG1125         158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDE  198 (309)
T ss_pred             eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence                   599988887776664    456899999999875

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-34  Score=220.81  Aligned_cols=142  Identities=27%  Similarity=0.394  Sum_probs=110.2

Q ss_pred             hhhhheeeeEEcCCC---CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh----------------------
Q 044538           14 MLQLIEVISFSYPNL---QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR----------------------   68 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~---~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~----------------------   68 (158)
                      |+++.++ ++.|...   ...+++||||+|++||++||+|.||||||||+|++.....                      
T Consensus         1 mI~l~~v-sK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr   79 (339)
T COG1135           1 MIELENV-SKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR   79 (339)
T ss_pred             CeEEEee-eeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence            4556666 8888752   2468999999999999999999999999999999984321                      


Q ss_pred             -cceeeeccccchh--------hH------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538           69 -QKLRIGRHSRHLE--------DL------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY  127 (158)
Q Consensus        69 -~~~~~~~~~~~~~--------~~------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~  127 (158)
                       .+..+|..+|++.        ++            -...+++.++++.+|++++.+ +++.+|||||||||+||||+..
T Consensus        80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~-~yP~qLSGGQKQRVaIARALa~  158 (339)
T COG1135          80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD-RYPAQLSGGQKQRVAIARALAN  158 (339)
T ss_pred             HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc-cCchhcCcchhhHHHHHHHHhc
Confidence             1223555555431        11            112467889999999998766 4568999999999999999875


Q ss_pred             ------------CCCHHHHHHHHHHHhh----cCCeEEEEeecCCC
Q 044538          128 ------------HLDTQSIVAVAVTLDE----FAGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------------~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~~  157 (158)
                                  +|||+..+.+++.|++    ++.||++|||.|+.
T Consensus       159 ~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V  204 (339)
T COG1135         159 NPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV  204 (339)
T ss_pred             CCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH
Confidence                        6999999999888865    46799999999874

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=4e-34  Score=212.56  Aligned_cols=144  Identities=26%  Similarity=0.291  Sum_probs=109.6

Q ss_pred             hhhhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------
Q 044538           13 PMLQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------   70 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------   70 (158)
                      +++.+.|+ ++.|+.+.  .+++++|||+|.+||++||+|+||||||||.+++++.....                    
T Consensus         2 ~~l~v~nl-~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~   80 (252)
T COG1124           2 TLLSVRNL-SIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF   80 (252)
T ss_pred             ceEEEece-EEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence            35666666 99997653  14899999999999999999999999999999999753211                    


Q ss_pred             -eeeeccccchh----hHhh----------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           71 -LRIGRHSRHLE----DLLT----------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        71 -~~~~~~~~~~~----~~~~----------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                       ..+...+|+..    +..+                .++++.++++.+|+++...++++++|||||+||+|||||+..  
T Consensus        81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P  160 (252)
T COG1124          81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP  160 (252)
T ss_pred             ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence             11222233321    1111                124578899999999877777789999999999999999764  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                .||...+..+++.+.+.    +.|+||||||+..
T Consensus       161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~  204 (252)
T COG1124         161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL  204 (252)
T ss_pred             CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH
Confidence                      69999999999888654    4699999999753

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=9.1e-34  Score=214.69  Aligned_cols=140  Identities=30%  Similarity=0.410  Sum_probs=108.1

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      ++.+.++ ++.|++  +++++|+||++++|++++|+||||||||||+|+|++....                    ...+
T Consensus         2 ~L~~~~l-s~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i   78 (258)
T COG1120           2 MLEVENL-SFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL   78 (258)
T ss_pred             eeEEEEE-EEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence            3455555 888874  4689999999999999999999999999999999853211                    1124


Q ss_pred             eccccch----------------------hhHhh--HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHL----------------------EDLLT--MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~----------------------~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ++.+|..                      +...+  ..+.+.++++.+++.+... +++.+|||||||||.||+|+..  
T Consensus        79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-r~~~~LSGGerQrv~iArALaQ~~  157 (258)
T COG1120          79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-RPVDELSGGERQRVLIARALAQET  157 (258)
T ss_pred             EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-CcccccChhHHHHHHHHHHHhcCC
Confidence            4444321                      11111  2246888999999998766 6789999999999999998765  


Q ss_pred             ----------CCCHHHHHHHHHHHhhcC----CeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEFA----GGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~~----~tvi~vtHd~~~  157 (158)
                                +||...+.++++.++++.    .|+|+|+||+++
T Consensus       158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~  201 (258)
T COG1120         158 PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL  201 (258)
T ss_pred             CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                      699999999999887654    799999999875

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=4.5e-33  Score=219.06  Aligned_cols=141  Identities=26%  Similarity=0.354  Sum_probs=106.2

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeee
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIG   74 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~   74 (158)
                      +.+++.++ ++.|+.  ..+++|+||+|++||+++|+|||||||||+||+|+|....                  +..+|
T Consensus         4 ~~l~i~~v-~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig   80 (352)
T COG3842           4 PALEIRNV-SKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG   80 (352)
T ss_pred             ceEEEEee-eeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence            45666666 999983  4689999999999999999999999999999999975321                  12244


Q ss_pred             ccccch--hhHhh-------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538           75 RHSRHL--EDLLT-------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        75 ~~~~~~--~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                      .++|.+  ++.++                   ..+++.++++.+++.+... +++++|||||||||++|||+..      
T Consensus        81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-R~p~qLSGGQqQRVALARAL~~~P~vLL  159 (352)
T COG3842          81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-RKPHQLSGGQQQRVALARALVPEPKVLL  159 (352)
T ss_pred             eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-hChhhhChHHHHHHHHHHHhhcCcchhh
Confidence            444432  11111                   2357889999999998776 5669999999999999998754      


Q ss_pred             ------CCCHHHHHHHHHH----HhhcCCeEEEEeecCCC
Q 044538          128 ------HLDTQSIVAVAVT----LDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------~lD~~~~~~l~~~----l~~~~~tvi~vtHd~~~  157 (158)
                            +||..-+..+...    .++.+.|.|+||||.++
T Consensus       160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeE  199 (352)
T COG3842         160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEE  199 (352)
T ss_pred             hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence                  6887666555544    45567899999999764

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.98  E-value=7.2e-33  Score=205.03  Aligned_cols=142  Identities=27%  Similarity=0.369  Sum_probs=109.6

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-----------------------c
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-----------------------Q   69 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-----------------------~   69 (158)
                      .|+++.++ +++|+++. .+|++|||+|++||+++|+||||||||||+|++.+...                       .
T Consensus         2 ~~i~~~nl-~k~yp~~~-~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~   79 (258)
T COG3638           2 MMIEVKNL-SKTYPGGH-QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL   79 (258)
T ss_pred             ceEEEeee-eeecCCCc-eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence            35677776 99997654 69999999999999999999999999999999985321                       1


Q ss_pred             ceeeeccccchh--------------------------hHhh--HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHH
Q 044538           70 KLRIGRHSRHLE--------------------------DLLT--MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMF  121 (158)
Q Consensus        70 ~~~~~~~~~~~~--------------------------~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i  121 (158)
                      +..+|+.+|.+.                          ..++  ....+.++|+++|+.+... ++.++|||||+|||+|
T Consensus        80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-qra~~LSGGQQQRVaI  158 (258)
T COG3638          80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-QRASTLSGGQQQRVAI  158 (258)
T ss_pred             HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-HHhccCCcchhHHHHH
Confidence            122444443320                          0011  1245678899999988766 5679999999999999


Q ss_pred             HHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          122 TLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       122 a~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ||+++.            .|||.+...+++.|++.    +.|+|+..|++++
T Consensus       159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl  210 (258)
T COG3638         159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL  210 (258)
T ss_pred             HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH
Confidence            999875            59999999999988764    5799999999864

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.97  E-value=5.5e-32  Score=211.93  Aligned_cols=138  Identities=25%  Similarity=0.358  Sum_probs=105.4

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH   76 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~   76 (158)
                      +++.++ ++.|++..  +++++||+|++||+++|+||||||||||||+|+|....                  ...++++
T Consensus         4 i~l~~v-~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamV   80 (338)
T COG3839           4 LELKNV-RKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMV   80 (338)
T ss_pred             EEEeee-EEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEE
Confidence            455565 88898643  79999999999999999999999999999999975421                  1224444


Q ss_pred             ccch--hhHh------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538           77 SRHL--EDLL------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------  127 (158)
Q Consensus        77 ~~~~--~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------  127 (158)
                      +|.+  ++.+                  ..+++++++.+.+++.+..++ ++.+|||||||||++|||+..         
T Consensus        81 FQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r-~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE  159 (338)
T COG3839          81 FQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR-KPLQLSGGQRQRVALARALVRKPKVFLLDE  159 (338)
T ss_pred             eCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhc-CcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence            4432  1111                  124678899999999988774 569999999999999999765         


Q ss_pred             ---CCCHHHHHHHHHHHhh----cCCeEEEEeecCC
Q 044538          128 ---HLDTQSIVAVAVTLDE----FAGGVVLVSHDSR  156 (158)
Q Consensus       128 ---~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~  156 (158)
                         +||...+..+...+++    ++.|+|+||||..
T Consensus       160 PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~  195 (338)
T COG3839         160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV  195 (338)
T ss_pred             chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH
Confidence               6888777766665544    5679999999964

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=4.9e-32  Score=204.17  Aligned_cols=141  Identities=33%  Similarity=0.475  Sum_probs=110.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------cee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~   72 (158)
                      ++.+.++ +++|++. ..+++++||++++|++++|+|+||||||||++++++...+                     +..
T Consensus         3 ~i~~~~l-~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~   80 (235)
T COG1122           3 MIEAENL-SFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK   80 (235)
T ss_pred             eEEEEEE-EEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence            4455555 9999876 5689999999999999999999999999999999864221                     112


Q ss_pred             eeccccchhhHh---------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           73 IGRHSRHLEDLL---------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        73 ~~~~~~~~~~~~---------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      +|+.+|+....+                     ...+++.++++.+++....+ +++.+|||||||||+||.++..    
T Consensus        81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-r~p~~LSGGqkqRvaIA~vLa~~P~i  159 (235)
T COG1122          81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-RPPFNLSGGQKQRVAIAGVLAMGPEI  159 (235)
T ss_pred             eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-CCccccCCcceeeHHhhHHHHcCCCE
Confidence            455444321111                     13467889999999988755 6779999999999999877654    


Q ss_pred             --------CCCHHHHHHHHHHHhhcC----CeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEFA----GGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~~----~tvi~vtHd~~~  157 (158)
                              +||+.+..++++.++++.    .|+|++|||+++
T Consensus       160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~  201 (235)
T COG1122         160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL  201 (235)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence                    699999999999987763    599999999875

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=8.2e-32  Score=196.92  Aligned_cols=141  Identities=23%  Similarity=0.355  Sum_probs=102.1

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------------------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------------------------   68 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------------------------   68 (158)
                      +.+.+.++ ++.|+..  .+|++||++|++++++|++||||||||||+|++.....                        
T Consensus         6 ~~~~~~~l-~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d   82 (253)
T COG1117           6 PAIEVRDL-NLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD   82 (253)
T ss_pred             ceeEecce-eEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence            34555565 8999854  58999999999999999999999999999999972100                        


Q ss_pred             ---cceeeeccccch-------hhH------------hhHHHHHHHHHHHcCCCCCCC---CCCCCCCChHHHHHHHHHH
Q 044538           69 ---QKLRIGRHSRHL-------EDL------------LTMEEAVHAKLRKFGLPGHNH---LTPIANLSGGQKVRVMFTL  123 (158)
Q Consensus        69 ---~~~~~~~~~~~~-------~~~------------~~~~~~~~~~l~~~~l~~~~~---~~~~~~LSgGqkqrv~ia~  123 (158)
                         -+.++|.++|..       .++            ...++.++..|+...|.+...   ++....||||||||+||||
T Consensus        83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR  162 (253)
T COG1117          83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR  162 (253)
T ss_pred             HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence               011234433321       111            122456777777777654221   1345689999999999999


Q ss_pred             HHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538          124 VSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSR  156 (158)
Q Consensus       124 ~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~  156 (158)
                      ++..            .|||.+...+.+++.+++  -|||+|||+|.
T Consensus       163 alAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmq  209 (253)
T COG1117         163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ  209 (253)
T ss_pred             HHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHH
Confidence            8764            699999999999888875  59999999974

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.97  E-value=9e-31  Score=195.38  Aligned_cols=141  Identities=29%  Similarity=0.418  Sum_probs=105.3

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ce
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KL   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~   71 (158)
                      +.+.++ +++|++...++++++||+|++|++++|+||||||||||+++|++....                       +.
T Consensus         2 l~~~~l-~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         2 IRFEQV-SKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             eEEEEE-EEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence            445555 888865333589999999999999999999999999999999864211                       01


Q ss_pred             eeeccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           72 RIGRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        72 ~~~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      .+++.++..        .+.+.            ..+++.++++.+++.+..+ +++.+||||||||++||++++.    
T Consensus        81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~l  159 (216)
T TIGR00960        81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-ALPMQLSGGEQQRVAIARAIVHKPPL  159 (216)
T ss_pred             hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            133333221        11110            1245677899999976554 5678999999999999998775    


Q ss_pred             --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                              +||+.++..+.+.++++   +.|||+||||+++
T Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~  200 (216)
T TIGR00960       160 LLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL  200 (216)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence                    69999999999988765   5799999999764

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.97  E-value=1e-30  Score=207.15  Aligned_cols=142  Identities=24%  Similarity=0.347  Sum_probs=107.3

Q ss_pred             hhhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           14 MLQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      |+.+.++ +++|+..  ..++|+|+||+|++||+++|+||||||||||+++|++....                      
T Consensus         1 mI~~~~l-sk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~   79 (343)
T TIGR02314         1 MIKLSNI-TKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK   79 (343)
T ss_pred             CEEEEEE-EEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence            3555566 8999632  23689999999999999999999999999999999853211                      


Q ss_pred             -ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           70 -KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        70 -~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                       +..+++.+|.+        .+..            ...+++.++++.+|+.+..+ +++.+|||||||||+||+|++. 
T Consensus        80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-~~~~~LSgGqkQRV~IARAL~~~  158 (343)
T TIGR02314        80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-SYPSNLSGGQKQRVAIARALASN  158 (343)
T ss_pred             HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHhC
Confidence             11244444321        0111            01245678899999987655 5679999999999999999875 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                 +||+.+...+++.+++.    +.|||+||||++.
T Consensus       159 P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~  203 (343)
T TIGR02314       159 PKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV  203 (343)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                       69999999998888764    5799999999864

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=7.1e-31  Score=194.91  Aligned_cols=143  Identities=29%  Similarity=0.378  Sum_probs=105.6

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      .+.+++.++ +++|++.  .+++|+||+|++||+++|+||||||||||+|.|.+...+                      
T Consensus         6 ~~~I~vr~v-~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~   82 (263)
T COG1127           6 EPLIEVRGV-TKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE   82 (263)
T ss_pred             cceEEEeee-eeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence            456666665 8888654  589999999999999999999999999999999864321                      


Q ss_pred             -ceeeeccccc--hhhHhh-------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538           70 -KLRIGRHSRH--LEDLLT-------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY  127 (158)
Q Consensus        70 -~~~~~~~~~~--~~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~  127 (158)
                       +.++|..+|.  ++..++                   ..+.+..-++.+|+.....+..+++|||||++|++||||+..
T Consensus        83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial  162 (263)
T COG1127          83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL  162 (263)
T ss_pred             HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence             1123433332  111111                   234556678999998874445679999999999999999765


Q ss_pred             ------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                  +|||.+...+.++++++    +.|+++||||++.
T Consensus       163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s  208 (263)
T COG1127         163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS  208 (263)
T ss_pred             CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH
Confidence                        69998877777666544    5799999999864

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=8.4e-31  Score=200.34  Aligned_cols=133  Identities=26%  Similarity=0.343  Sum_probs=101.4

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccch
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRHL   80 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~~   80 (158)
                      ++.|+..  .+++|||++|+.||.++|+||||||||||+|+|+|...+                     ...+|+.+|++
T Consensus         9 ~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y   86 (345)
T COG1118           9 KKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY   86 (345)
T ss_pred             hhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEech
Confidence            6666654  478999999999999999999999999999999974321                     12356555542


Q ss_pred             h--hH--------------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           81 E--DL--------------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        81 ~--~~--------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      .  +.                    .....++.++|+.+.++.... +++.+|||||||||++|||+..           
T Consensus        87 ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf  165 (345)
T COG1118          87 ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-RYPAQLSGGQRQRVALARALAVEPKVLLLDEPF  165 (345)
T ss_pred             hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-cCchhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence            1  11                    123467888999999998776 4568999999999999998764           


Q ss_pred             -CCCHHHHHHHHHHH----hhcCCeEEEEeecCCC
Q 044538          128 -HLDTQSIVAVAVTL----DEFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 -~lD~~~~~~l~~~l----~~~~~tvi~vtHd~~~  157 (158)
                       .||...+.++...|    .+++.|.|+||||.++
T Consensus       166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~ee  200 (345)
T COG1118         166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEE  200 (345)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHH
Confidence             58887766665555    4557899999999865

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.97  E-value=5.1e-30  Score=189.97  Aligned_cols=136  Identities=25%  Similarity=0.382  Sum_probs=103.4

Q ss_pred             eeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------ceeeeccccch-
Q 044538           19 EVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------KLRIGRHSRHL-   80 (158)
Q Consensus        19 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------~~~~~~~~~~~-   80 (158)
                      ++ ++.|++. ..+|+++||++++|++++|+||||||||||+++|++....                 ...+++.++.. 
T Consensus         4 ~l-~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~   81 (205)
T cd03226           4 NI-SFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVD   81 (205)
T ss_pred             cE-EEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence            44 8888652 3589999999999999999999999999999999964211                 01244444431 


Q ss_pred             ---h-----hHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538           81 ---E-----DLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ  132 (158)
Q Consensus        81 ---~-----~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~  132 (158)
                         .     +.+.        ..+++.++++.+++.+..+ +++.+||||||||++||++++.            +||+.
T Consensus        82 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~  160 (205)
T cd03226          82 YQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK  160 (205)
T ss_pred             hhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHH
Confidence               0     1110        1135678899999987654 5679999999999999988775            69999


Q ss_pred             HHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          133 SIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       133 ~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ++..+.+.++++   +.|+|++|||+++
T Consensus       161 ~~~~l~~~l~~~~~~~~tii~~sH~~~~  188 (205)
T cd03226         161 NMERVGELIRELAAQGKAVIVITHDYEF  188 (205)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            999999988765   4799999999753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5e-30  Score=193.51  Aligned_cols=143  Identities=25%  Similarity=0.328  Sum_probs=107.5

Q ss_pred             hhhhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538           13 PMLQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------   69 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------   69 (158)
                      |++.+.++ ++.|+...  .++|+++||+|++||+++|+||||||||||+++|++....                     
T Consensus         4 ~~l~~~~l-~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~   82 (233)
T PRK11629          4 ILLQCDNL-CKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA   82 (233)
T ss_pred             ceEEEEeE-EEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence            56777666 99997432  3589999999999999999999999999999999864210                     


Q ss_pred             ---ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           70 ---KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        70 ---~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                         +..+++.++..        .+.+            ...+++.++++.+|+.+... +++.+||||||||++||++++
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~qrl~la~al~  161 (233)
T PRK11629         83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-HRPSELSGGERQRVAIARALV  161 (233)
T ss_pred             HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHh
Confidence               01244433321        1111            01245678899999976554 567899999999999998877


Q ss_pred             h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .            +||+.+...+.+.++++    +.|||++|||+++
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~  208 (233)
T PRK11629        162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL  208 (233)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            5            69999999999888764    4699999999764

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.97  E-value=3.9e-30  Score=201.35  Aligned_cols=142  Identities=20%  Similarity=0.298  Sum_probs=108.5

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------cee
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLR   72 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~   72 (158)
                      .+++.+.++ +++|+.  ..+|+|+||+|++|++++|+||||||||||+++|++....                   +..
T Consensus         5 ~~~i~i~~l-~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~   81 (306)
T PRK13537          5 VAPIDFRNV-EKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR   81 (306)
T ss_pred             CceEEEEeE-EEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhc
Confidence            356777666 999975  3589999999999999999999999999999999964211                   112


Q ss_pred             eeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           73 IGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        73 ~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      +|+.++..        .+.+            ...+++.++++.+++....+ +++.+||||||||++||++++.     
T Consensus        82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~aL~~~P~ll  160 (306)
T PRK13537         82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-AKVGELSGGMKRRLTLARALVNDPDVL  160 (306)
T ss_pred             EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence            45444321        1111            01234567889999976544 5789999999999999998775     


Q ss_pred             -------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                             +||+.++..+++.++++   +.|||++||++++
T Consensus       161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e  200 (306)
T PRK13537        161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE  200 (306)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence                   79999999999998775   4799999999864

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.7e-30  Score=204.98  Aligned_cols=141  Identities=25%  Similarity=0.315  Sum_probs=105.6

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeec
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGR   75 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~   75 (158)
                      ++.+.++ ++.|++. ..+|+++||++++||+++|+||||||||||+++|++....                  ...+++
T Consensus         3 ~l~i~~l-~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~   80 (356)
T PRK11650          3 GLKLQAV-RKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM   80 (356)
T ss_pred             EEEEEeE-EEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence            3555565 8888422 3589999999999999999999999999999999974321                  112444


Q ss_pred             cccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538           76 HSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------  127 (158)
Q Consensus        76 ~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------  127 (158)
                      .+|..  +      +++            ...+++.++++.+++.+..+ +++.+|||||||||+||||++.        
T Consensus        81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~QRvalARAL~~~P~llLLD  159 (356)
T PRK11650         81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-RKPRELSGGQRQRVAMGRAIVREPAVFLFD  159 (356)
T ss_pred             EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            44321  1      111            01245678899999987655 5679999999999999998775        


Q ss_pred             ----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                          +||+..+..+.+.+++.    +.|+|+||||.++
T Consensus       160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e  197 (356)
T PRK11650        160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVE  197 (356)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                79999998888877643    5799999999753

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.97  E-value=5.6e-30  Score=191.26  Aligned_cols=139  Identities=31%  Similarity=0.391  Sum_probs=103.0

Q ss_pred             hheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------c
Q 044538           17 LIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------K   70 (158)
Q Consensus        17 ~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~   70 (158)
                      +.++ ++.|+...  ..+++++||+|++|++++|+||||||||||+++|++....                        .
T Consensus         3 ~~~l-~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   81 (218)
T cd03255           3 LKNL-SKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRR   81 (218)
T ss_pred             Eeee-EEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHh
Confidence            3444 88886521  3589999999999999999999999999999999864210                        0


Q ss_pred             eeeeccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           71 LRIGRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        71 ~~~~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      ..+++.++..        .+.+.            ..+.+.++++.+++..... +++.+||||||||++||++++.   
T Consensus        82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~  160 (218)
T cd03255          82 RHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-HYPSELSGGQQQRVAIARALANDPK  160 (218)
T ss_pred             hcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-cChhhcCHHHHHHHHHHHHHccCCC
Confidence            1233333221        01100            1245677899999976554 5678999999999999998775   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                               +||+.++..+.+.++++    +.|||+||||+++
T Consensus       161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  203 (218)
T cd03255         161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL  203 (218)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence                     69999999999888764    4699999999764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.9e-30  Score=202.91  Aligned_cols=145  Identities=26%  Similarity=0.339  Sum_probs=107.8

Q ss_pred             chhhhhheeeeEEcCCC--------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------
Q 044538           12 SPMLQLIEVISFSYPNL--------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------   69 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~--------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------   69 (158)
                      .+++++.++ ++.|+..        ...+|+||||+|++||+++|+|+||||||||+++|++....              
T Consensus         3 ~~~l~v~nl-~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~   81 (327)
T PRK11308          3 QPLLQAIDL-KKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK   81 (327)
T ss_pred             CceEEEeee-EEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCc
Confidence            356777776 8888631        23689999999999999999999999999999999853210              


Q ss_pred             ---------ceeeeccccchh----------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHH
Q 044538           70 ---------KLRIGRHSRHLE----------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKV  117 (158)
Q Consensus        70 ---------~~~~~~~~~~~~----------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  117 (158)
                               +..+++.+|...          +.+             ...+++.++++.+|+++...++++++|||||+|
T Consensus        82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q  161 (327)
T PRK11308         82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ  161 (327)
T ss_pred             CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence                     112444444310          000             012457788999999643334567999999999


Q ss_pred             HHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          118 RVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       118 rv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      |++||+|++.            +||..++..+++.|.++    +.|+|+||||+++
T Consensus       162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~  217 (327)
T PRK11308        162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSV  217 (327)
T ss_pred             HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            9999998875            69999999998888654    5799999999764

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=1.2e-29  Score=189.37  Aligned_cols=148  Identities=23%  Similarity=0.325  Sum_probs=110.5

Q ss_pred             CCCCCCchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------
Q 044538            6 EPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------   69 (158)
Q Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------   69 (158)
                      +|....++++.+.++ ++.|+..  .+++++||++++|++++|+||||||||||+++|++....                
T Consensus         3 ~~~~~~~~~l~~~~l-~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~   79 (214)
T PRK13543          3 EPLHTAPPLLAAHAL-AFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD   79 (214)
T ss_pred             cCCCCCcceEEEeeE-EEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchh
Confidence            444555577877776 8888653  589999999999999999999999999999999964211                


Q ss_pred             -ceeeeccccch--------hhHh---------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           70 -KLRIGRHSRHL--------EDLL---------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        70 -~~~~~~~~~~~--------~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                       ...+++.++..        .+..         ...+.+.++++.+++..... +++.+||||||||++||++++.    
T Consensus        80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~l  158 (214)
T PRK13543         80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYED-TLVRQLSAGQKKRLALARLWLSPAPL  158 (214)
T ss_pred             hhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhcc-CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence             00133332211        1111         12244567889999976544 5678999999999999988774    


Q ss_pred             --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                              +||+.+...+.+.+++.   +.|+|++|||.++
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  199 (214)
T PRK13543        159 WLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA  199 (214)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence                    69999999999888765   5799999999865

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=4.6e-30  Score=204.28  Aligned_cols=140  Identities=24%  Similarity=0.375  Sum_probs=107.0

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeec
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGR   75 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~   75 (158)
                      ++.+.++ +++|++.  .+|+++||++++|++++|+||||||||||+++|+|....                  ...+++
T Consensus         4 ~l~~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~   80 (353)
T TIGR03265         4 YLSIDNI-RKRFGAF--TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI   80 (353)
T ss_pred             EEEEEEE-EEEeCCe--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence            4566666 8888753  479999999999999999999999999999999975321                  112444


Q ss_pred             cccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538           76 HSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------  127 (158)
Q Consensus        76 ~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------  127 (158)
                      .+|..  +      +++            ...+++.++++.+++.+..+ +++.+|||||||||+||++++.        
T Consensus        81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-~~~~~LSgGq~QRvaLARaL~~~P~llLLD  159 (353)
T TIGR03265        81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-KYPGQLSGGQQQRVALARALATSPGLLLLD  159 (353)
T ss_pred             EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            43321  1      111            11346778999999987665 5679999999999999999875        


Q ss_pred             ----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                          +||...+..+.+.+++.    +.|+|+||||.++
T Consensus       160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~e  197 (353)
T TIGR03265       160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEE  197 (353)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence                69999998888877653    6799999999764

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5.4e-30  Score=203.68  Aligned_cols=141  Identities=21%  Similarity=0.330  Sum_probs=107.6

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeee
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIG   74 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~   74 (158)
                      +++.+.++ ++.|+.  ..+|+++||++++||+++|+||||||||||+++|++....                  +..++
T Consensus         5 ~~l~~~~l-~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig   81 (351)
T PRK11432          5 NFVVLKNI-TKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC   81 (351)
T ss_pred             cEEEEEeE-EEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence            46776666 999964  3589999999999999999999999999999999964321                  11244


Q ss_pred             ccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538           75 RHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        75 ~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                      +.+|..        .++.            ...+++.++++.+++.+..+ +++.+|||||||||+|||+++.       
T Consensus        82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-r~~~~LSgGq~QRVaLARaL~~~P~lLLL  160 (351)
T PRK11432         82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-RYVDQISGGQQQRVALARALILKPKVLLF  160 (351)
T ss_pred             EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            443321        1111            11356778899999987655 5679999999999999999875       


Q ss_pred             -----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                           +||+..+.++.+.++++    +.|+|+||||.++
T Consensus       161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e  199 (351)
T PRK11432        161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE  199 (351)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence                 69999999888877653    5799999999764

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.97  E-value=6.1e-30  Score=190.51  Aligned_cols=137  Identities=26%  Similarity=0.348  Sum_probs=102.6

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR   78 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~   78 (158)
                      +.++ ++.|++  .++++++||++++|++++|+||||||||||+++|++....                  ...+++.++
T Consensus         3 ~~~l-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q   79 (213)
T cd03259           3 LKGL-SKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ   79 (213)
T ss_pred             eeee-EEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence            3444 888865  3589999999999999999999999999999999964211                  012344333


Q ss_pred             ch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           79 HL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        79 ~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      ..        .+.+            ...+++.++++.+++..... +++.+||||||||++||++++.           
T Consensus        80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt  158 (213)
T cd03259          80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-RYPHELSGGQQQRVALARALAREPSLLLLDEPL  158 (213)
T ss_pred             chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            21        0111            01234667889999976544 5678999999999999988775           


Q ss_pred             -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                       +||+.++..+.+.++++    +.|||++|||+++
T Consensus       159 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  193 (213)
T cd03259         159 SALDAKLREELREELKELQRELGITTIYVTHDQEE  193 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence             69999999999988764    5799999999753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.97  E-value=6.7e-30  Score=195.60  Aligned_cols=142  Identities=29%  Similarity=0.300  Sum_probs=107.6

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c------------eeeecc
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K------------LRIGRH   76 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~------------~~~~~~   76 (158)
                      .+++.+.++ ++.|++.  .+|+++||+|.+|++++|+||||||||||+++|++....   .            ..+++.
T Consensus        10 ~~~l~i~~l-~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v   86 (257)
T PRK11247         10 GTPLLLNAV-SKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM   86 (257)
T ss_pred             CCcEEEEEE-EEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEE
Confidence            456777666 9998753  589999999999999999999999999999999975321   0            113333


Q ss_pred             ccch--------hhHhh------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538           77 SRHL--------EDLLT------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLD  130 (158)
Q Consensus        77 ~~~~--------~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD  130 (158)
                      ++..        .+.+.      ..+++.++++.+++.+... +++.+||||||||++||++++.            +||
T Consensus        87 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD  165 (257)
T PRK11247         87 FQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD  165 (257)
T ss_pred             ecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence            3321        11111      1345677899999976554 5678999999999999988775            699


Q ss_pred             HHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          131 TQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       131 ~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +.++..+.+.+.+.    +.|||+||||+++
T Consensus       166 ~~~~~~l~~~L~~~~~~~~~tviivsHd~~~  196 (257)
T PRK11247        166 ALTRIEMQDLIESLWQQHGFTVLLVTHDVSE  196 (257)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            99999998888653    5799999999754

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.97  E-value=4e-30  Score=201.01  Aligned_cols=141  Identities=23%  Similarity=0.351  Sum_probs=105.9

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceee
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRI   73 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~   73 (158)
                      .++.+.++ ++.|++  ..+|+++||+|++|++++|+||||||||||+++|++....                   +..+
T Consensus         3 ~~i~~~~l-~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i   79 (303)
T TIGR01288         3 VAIDLVGV-SKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI   79 (303)
T ss_pred             cEEEEEeE-EEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence            35666666 888875  3589999999999999999999999999999999964211                   1123


Q ss_pred             eccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538           74 GRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        74 ~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                      ++.++..        .+.+.            ..+.+.++++.+++.+... +++.+||||||||++||++++.      
T Consensus        80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lll  158 (303)
T TIGR01288        80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-VRVALLSGGMKRRLTLARALINDPQLLI  158 (303)
T ss_pred             EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-CchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            4433321        11110            1134556788999976544 5679999999999999988775      


Q ss_pred             ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                            +||+.++..+++.++++   +.|||++|||+++
T Consensus       159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~  197 (303)
T TIGR01288       159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE  197 (303)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence                  79999999999988775   5799999999864

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.97  E-value=7.5e-30  Score=201.55  Aligned_cols=148  Identities=18%  Similarity=0.254  Sum_probs=108.4

Q ss_pred             CCCchhhhhheeeeEEcCCC-----------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------
Q 044538            9 ESTSPMLQLIEVISFSYPNL-----------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------   69 (158)
Q Consensus         9 ~~~~~~l~~~~~~~~~~~~~-----------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------   69 (158)
                      +...+++++.++ ++.|+..           ...+++|+||+|.+||+++|+|+||||||||+++|++....        
T Consensus         3 ~~~~~~l~v~~l-~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~   81 (331)
T PRK15079          3 EGKKVLLEVADL-KVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWL   81 (331)
T ss_pred             CCCCceEEEeCe-EEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEEC
Confidence            344567777777 8888631           23589999999999999999999999999999999853210        


Q ss_pred             ---------------ceeeeccccch----h------hHh-----------h---HHHHHHHHHHHcCCCCCCCCCCCCC
Q 044538           70 ---------------KLRIGRHSRHL----E------DLL-----------T---MEEAVHAKLRKFGLPGHNHLTPIAN  110 (158)
Q Consensus        70 ---------------~~~~~~~~~~~----~------~~~-----------~---~~~~~~~~l~~~~l~~~~~~~~~~~  110 (158)
                                     +..+++.+|..    .      +.+           +   ..+.+.++++.+++.+...++++++
T Consensus        82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~  161 (331)
T PRK15079         82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE  161 (331)
T ss_pred             CEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence                           11244443331    1      000           1   1234567889999954333456799


Q ss_pred             CChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          111 LSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       111 LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      |||||+|||+||+|++.            +||+.++..+++.|+++    +.|+|+||||+++
T Consensus       162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~  224 (331)
T PRK15079        162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAV  224 (331)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            99999999999998875            69999999888887654    5799999999864

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.96  E-value=7.1e-30  Score=202.29  Aligned_cols=141  Identities=22%  Similarity=0.339  Sum_probs=107.2

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceee
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRI   73 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~   73 (158)
                      +++.+.++ +++|+..  .+|+|+||+|++|++++|+||||||||||+++|++...+                   +..+
T Consensus        40 ~~i~i~nl-~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i  116 (340)
T PRK13536         40 VAIDLAGV-SKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI  116 (340)
T ss_pred             eeEEEEEE-EEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence            35666666 8888753  589999999999999999999999999999999964211                   1124


Q ss_pred             eccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538           74 GRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        74 ~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                      ++.++..        .+.+.            ..+++.++++.+++.+..+ +++.+||||||||++||++++.      
T Consensus       117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~-~~~~~LS~G~kqrv~lA~aL~~~P~lLi  195 (340)
T PRK13536        117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-ARVSDLSGGMKRRLTLARALINDPQLLI  195 (340)
T ss_pred             EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhC-CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            4443321        11110            1234567889999986554 5679999999999999988775      


Q ss_pred             ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                            +||+.++..+++.++++   +.|||++|||+++
T Consensus       196 LDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e  234 (340)
T PRK13536        196 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE  234 (340)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence                  79999999999998775   5799999999864

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8e-30  Score=199.46  Aligned_cols=142  Identities=22%  Similarity=0.283  Sum_probs=105.2

Q ss_pred             hhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           15 LQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        15 l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      +.+.++ +++|+...   ..+|+|+||+|.+||+++|+||||||||||+++|++....                      
T Consensus         3 i~~~~l-~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          3 IKVKNI-VKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEE-EEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence            445555 89997532   2589999999999999999999999999999999964210                      


Q ss_pred             ----------------------ceeeeccccch----h-----hHh------------hHHHHHHHHHHHcCCCCCCCCC
Q 044538           70 ----------------------KLRIGRHSRHL----E-----DLL------------TMEEAVHAKLRKFGLPGHNHLT  106 (158)
Q Consensus        70 ----------------------~~~~~~~~~~~----~-----~~~------------~~~~~~~~~l~~~~l~~~~~~~  106 (158)
                                            +..+|+.+|..    .     +.+            ...+++.++++.+|+.....++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~  161 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR  161 (305)
T ss_pred             ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence                                  01134444421    0     101            0124577889999996323346


Q ss_pred             CCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          107 PIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       107 ~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ++.+||||||||++||++++.            +||+.++..+++.++++   +.|||+||||+++
T Consensus       162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~  227 (305)
T PRK13651        162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN  227 (305)
T ss_pred             ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHH
Confidence            779999999999999988775            69999999998888654   5799999999864

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.96  E-value=6.9e-30  Score=189.92  Aligned_cols=136  Identities=33%  Similarity=0.458  Sum_probs=100.9

Q ss_pred             eeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeeccccch
Q 044538           21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGRHSRHL   80 (158)
Q Consensus        21 ~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~~~~~~   80 (158)
                      +++.|++....+++++||+|++|++++|+||||||||||+++|++....                    ...+++.++..
T Consensus         5 l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   84 (211)
T cd03225           5 LSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNP   84 (211)
T ss_pred             EEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecCh
Confidence            3888865223589999999999999999999999999999999964211                    01133333321


Q ss_pred             ---------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538           81 ---------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------  127 (158)
Q Consensus        81 ---------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------  127 (158)
                               .+.+.            ..+.+.++++.+++..... +++.+||||||||++||++++.            
T Consensus        85 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEPt~  163 (211)
T cd03225          85 DDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA  163 (211)
T ss_pred             hhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence                     01100            1234567888999976544 5679999999999999998775            


Q ss_pred             CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      +||+.++..+.+.++++   +.|||++|||+++
T Consensus       164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~  196 (211)
T cd03225         164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL  196 (211)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            69999999999988765   4699999999754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.96  E-value=9.2e-30  Score=192.23  Aligned_cols=137  Identities=28%  Similarity=0.354  Sum_probs=102.1

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ceee
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KLRI   73 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~~~   73 (158)
                      +.++ ++.|+.  ..+++|+||+|++|++++|+||||||||||+++|++....                       +..+
T Consensus         3 ~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i   79 (235)
T cd03261           3 LRGL-TKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM   79 (235)
T ss_pred             EEEE-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence            3444 888864  3589999999999999999999999999999999964210                       0113


Q ss_pred             eccccch--------hhHh----------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           74 GRHSRHL--------EDLL----------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        74 ~~~~~~~--------~~~~----------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      ++.++..        .+.+          .   ..+++.++++.+++..... +++.+|||||||||+||++++.     
T Consensus        80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~ia~al~~~p~ll  158 (235)
T cd03261          80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-LYPAELSGGMKKRVALARALALDPELL  158 (235)
T ss_pred             EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            3333321        0100          0   1234567889999976554 5679999999999999988775     


Q ss_pred             -------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                             +||+.++..+.+.+++.    +.|||+||||+++
T Consensus       159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~  199 (235)
T cd03261         159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT  199 (235)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence                   69999999999888764    5799999999764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.3e-29  Score=196.90  Aligned_cols=141  Identities=25%  Similarity=0.314  Sum_probs=105.1

Q ss_pred             hhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           15 LQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        15 l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      +.+.++ ++.|+...   .++|+|+||+|.+||+++|+||||||||||+++|++....                      
T Consensus         3 l~~~~l-~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13637          3 IKIENL-THIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI   81 (287)
T ss_pred             EEEEEE-EEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence            445555 88886421   3589999999999999999999999999999999964210                      


Q ss_pred             ceeeeccccchh---------hHhh------------HHHHHHHHHHHcCCC--CCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           70 KLRIGRHSRHLE---------DLLT------------MEEAVHAKLRKFGLP--GHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        70 ~~~~~~~~~~~~---------~~~~------------~~~~~~~~l~~~~l~--~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                      ...+++.++...         +.+.            ..+++.++++.+|+.  ... ++++.+||||||||++||++++
T Consensus        82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~~LSgGq~qrv~iAraL~  160 (287)
T PRK13637         82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK-DKSPFELSGGQKRRVAIAGVVA  160 (287)
T ss_pred             hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhc-cCCcccCCHHHHHHHHHHHHHH
Confidence            112454444310         1000            124567889999996  333 4667999999999999999887


Q ss_pred             h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .            +||+.++..+.+.++++    +.|||++|||+++
T Consensus       161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~  207 (287)
T PRK13637        161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED  207 (287)
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            5            69999999999888654    5799999999764

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.2e-29  Score=197.18  Aligned_cols=142  Identities=23%  Similarity=0.263  Sum_probs=105.0

Q ss_pred             hhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           15 LQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        15 l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      +.+.++ +++|++..   .++|+|+||+|++||+++|+||||||||||+++|++....                      
T Consensus         3 l~~~~l-~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (290)
T PRK13634          3 ITFQKV-EHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK   81 (290)
T ss_pred             EEEEEE-EEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            445555 89996421   3589999999999999999999999999999999864210                      


Q ss_pred             --ceeeeccccch----hh-----Hh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           70 --KLRIGRHSRHL----ED-----LL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        70 --~~~~~~~~~~~----~~-----~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                        ...+++.++..    .+     .+            ...+++.++++.+++.....++++.+||||||||++||++++
T Consensus        82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~  161 (290)
T PRK13634         82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA  161 (290)
T ss_pred             HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence              01245544431    10     00            012356778899999633334677999999999999999877


Q ss_pred             h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .            +||+.+...+++.++++    +.|||++|||+++
T Consensus       162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~  208 (290)
T PRK13634        162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED  208 (290)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            5            69999999998888654    5799999999764

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.96  E-value=9.4e-30  Score=189.56  Aligned_cols=140  Identities=26%  Similarity=0.374  Sum_probs=103.4

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ce
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KL   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~   71 (158)
                      +.+.++ ++.|+.. ..+|+|+||+|++|++++|+||||||||||+++|++....                       ..
T Consensus         2 l~~~~l-~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (214)
T TIGR02673         2 IEFHNV-SKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR   79 (214)
T ss_pred             EEEEee-eEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence            445555 8888522 3589999999999999999999999999999999864210                       01


Q ss_pred             eeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           72 RIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        72 ~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      .+++.++..        .+.+            ...+++.++++.+++.+..+ +++.+||||||||++||++++.    
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~l  158 (214)
T TIGR02673        80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-AFPEQLSGGEQQRVAIARAIVNSPPL  158 (214)
T ss_pred             heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhCCCCE
Confidence            133333221        0110            01245677889999976544 5678999999999999988775    


Q ss_pred             --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                              +||+.++..+.+.++++   +.|||++|||+++
T Consensus       159 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~  199 (214)
T TIGR02673       159 LLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSL  199 (214)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence                    69999999999988764   5799999999754

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.2e-29  Score=197.00  Aligned_cols=143  Identities=23%  Similarity=0.301  Sum_probs=104.9

Q ss_pred             hhhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538           14 MLQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------   69 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------   69 (158)
                      |+.+.++ ++.|+...   ..+|+|+||+|++||+++|+||||||||||+++|++....                     
T Consensus         1 mi~~~~v-~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   79 (288)
T PRK13643          1 MIKFEKV-NYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI   79 (288)
T ss_pred             CEEEEEE-EEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence            3455566 89996432   2489999999999999999999999999999999964210                     


Q ss_pred             ---ceeeeccccch----h-----hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538           70 ---KLRIGRHSRHL----E-----DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS  125 (158)
Q Consensus        70 ---~~~~~~~~~~~----~-----~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~  125 (158)
                         +..+++.++..    .     +.+            ...+++.++++.+++.....++++.+||||||||++||+++
T Consensus        80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL  159 (288)
T PRK13643         80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL  159 (288)
T ss_pred             HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence               01234444321    0     000            01234667888999964233467799999999999999887


Q ss_pred             hh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          126 MY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       126 l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      +.            +||+.++..+.+.++++   +.|||++|||+++
T Consensus       160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~  206 (288)
T PRK13643        160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD  206 (288)
T ss_pred             HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence            75            69999999998888654   5799999999764

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5.2e-30  Score=217.44  Aligned_cols=144  Identities=31%  Similarity=0.522  Sum_probs=111.9

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccchh
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHLE   81 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~~   81 (158)
                      ..+++.+.++ ++.|++  ..+|+|+||+|.+|++++|+||||||||||+++|++...+         ...+++.++...
T Consensus       309 ~~~~l~~~~l-~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~  385 (638)
T PRK10636        309 PNPLLKMEKV-SAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQL  385 (638)
T ss_pred             CCceEEEEee-EEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcch
Confidence            3456776666 888864  3589999999999999999999999999999999975321         224566555310


Q ss_pred             ----------hHh------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHH
Q 044538           82 ----------DLL------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQS  133 (158)
Q Consensus        82 ----------~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~  133 (158)
                                +.+      ...+.+..+++.|++.....++++.+|||||||||+||++++.            +||+.+
T Consensus       386 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~  465 (638)
T PRK10636        386 EFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM  465 (638)
T ss_pred             hhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence                      000      0124567789999996433346789999999999999988764            799999


Q ss_pred             HHHHHHHHhhcCCeEEEEeecCCC
Q 044538          134 IVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       134 ~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      ...+.+.|.++++|||+||||+++
T Consensus       466 ~~~l~~~L~~~~gtvi~vSHd~~~  489 (638)
T PRK10636        466 RQALTEALIDFEGALVVVSHDRHL  489 (638)
T ss_pred             HHHHHHHHHHcCCeEEEEeCCHHH
Confidence            999999999998899999999865

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.96  E-value=8.5e-30  Score=203.97  Aligned_cols=142  Identities=24%  Similarity=0.327  Sum_probs=107.6

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceee
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRI   73 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~   73 (158)
                      .+++.+.++ ++.|+.  ..+|+++||++++||+++|+||||||||||+++|+|....                  ...+
T Consensus        12 ~~~L~l~~l-~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i   88 (375)
T PRK09452         12 SPLVELRGI-SKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV   88 (375)
T ss_pred             CceEEEEEE-EEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence            456776666 888874  3589999999999999999999999999999999974321                  1124


Q ss_pred             eccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538           74 GRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        74 ~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                      ++.+|..        .+++            ...+++.++++.+++.+..+ +++.+|||||||||+|||+++.      
T Consensus        89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~p~~LSgGq~QRVaLARaL~~~P~llL  167 (375)
T PRK09452         89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-RKPHQLSGGQQQRVAIARAVVNKPKVLL  167 (375)
T ss_pred             EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            4443321        1111            01245677899999987655 5679999999999999998775      


Q ss_pred             ------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                            +||...+..+.+.|++.    +.|+|+||||.++
T Consensus       168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~e  207 (375)
T PRK09452        168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEE  207 (375)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                  69999998888887653    5799999999764

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.96  E-value=1.3e-29  Score=189.56  Aligned_cols=140  Identities=25%  Similarity=0.314  Sum_probs=103.5

Q ss_pred             hhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------
Q 044538           16 QLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------   69 (158)
Q Consensus        16 ~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------   69 (158)
                      .+.++ ++.|+...  .++++++||+|++|++++|+||||||||||+++|++....                        
T Consensus         3 ~~~~v-~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (221)
T TIGR02211         3 KCENL-GKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR   81 (221)
T ss_pred             EEEee-eEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence            44455 88886421  3589999999999999999999999999999999863210                        


Q ss_pred             ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           70 KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        70 ~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ...+++.++..        .+.+            ...+.+.++++.+++++..+ +++.+||||||||++||++++.  
T Consensus        82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p  160 (221)
T TIGR02211        82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-HRPSELSGGERQRVAIARALVNQP  160 (221)
T ss_pred             HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhCCC
Confidence            01234433321        1111            01234667889999976544 5678999999999999998775  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                +||+.+...+.+.++++    +.|||++|||+++
T Consensus       161 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~  204 (221)
T TIGR02211       161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL  204 (221)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                      79999999999888654    5799999999764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=1.2e-29  Score=191.81  Aligned_cols=143  Identities=22%  Similarity=0.272  Sum_probs=107.5

Q ss_pred             hhhhheeeeEEcCCCC-------CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhh--H
Q 044538           14 MLQLIEVISFSYPNLQ-------DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLED--L   83 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~-------~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~--~   83 (158)
                      ++++.++ ++.|.-..       ..+++||||+|++||+++|+|+|||||||+-|++.+..... ..+-+.......  .
T Consensus         4 ll~v~~l-~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~   82 (268)
T COG4608           4 LLEVKNL-KKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSK   82 (268)
T ss_pred             eEEEecc-EEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcch
Confidence            4555555 77775321       36899999999999999999999999999999999766532 122222222111  1


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCe
Q 044538           84 LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGG  147 (158)
Q Consensus        84 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~t  147 (158)
                      ....+++.++++.+|+......+++++|||||+||++||||+..            .||...+.++++++.++    +.|
T Consensus        83 ~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt  162 (268)
T COG4608          83 EERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLT  162 (268)
T ss_pred             hHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCe
Confidence            12346788999999998755567779999999999999999875            58888888888887654    579


Q ss_pred             EEEEeecCCC
Q 044538          148 VVLVSHDSRL  157 (158)
Q Consensus       148 vi~vtHd~~~  157 (158)
                      .++||||+..
T Consensus       163 ~lFIsHDL~v  172 (268)
T COG4608         163 YLFISHDLSV  172 (268)
T ss_pred             EEEEEEEHHh
Confidence            9999999865

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.1e-29  Score=194.23  Aligned_cols=139  Identities=27%  Similarity=0.353  Sum_probs=104.2

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c------------eeeeccccc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K------------LRIGRHSRH   79 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~------------~~~~~~~~~   79 (158)
                      +.+.++ ++.|++  ..+++|+||+|++|++++|+||||||||||+++|++....   .            ..+++.++.
T Consensus         2 l~~~~l-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~   78 (255)
T PRK11248          2 LQISHL-YADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN   78 (255)
T ss_pred             EEEEEE-EEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence            445555 888865  3589999999999999999999999999999999975321   0            013333322


Q ss_pred             h--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538           80 L--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------  127 (158)
Q Consensus        80 ~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------  127 (158)
                      .        .+.+.            ..+++.++++.+++..... +++.+||||||||++||++++.            
T Consensus        79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~  157 (255)
T PRK11248         79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG  157 (255)
T ss_pred             CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            1        11110            1234677899999976544 5678999999999999998775            


Q ss_pred             CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +||+.+...+.+.++++    +.|||++|||+++
T Consensus       158 ~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~  191 (255)
T PRK11248        158 ALDAFTREQMQTLLLKLWQETGKQVLLITHDIEE  191 (255)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            69999999999988764    4799999999764

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.4e-29  Score=201.02  Aligned_cols=142  Identities=27%  Similarity=0.386  Sum_probs=106.0

Q ss_pred             hhhhheeeeEEcCC--CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           14 MLQLIEVISFSYPN--LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        14 ~l~~~~~~~~~~~~--~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      |+.+.++ +++|+.  ....+|+|+||+|++|++++|+||||||||||+++|++....                      
T Consensus         1 mi~i~~l-~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   79 (343)
T PRK11153          1 MIELKNI-SKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK   79 (343)
T ss_pred             CEEEEeE-EEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence            3455555 889972  134689999999999999999999999999999999864210                      


Q ss_pred             -ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           70 -KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        70 -~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                       +..+++.++..        .+.+            ...+++.++++.+++.+..+ +++.+||||||||++||++++. 
T Consensus        80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~~  158 (343)
T PRK11153         80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-RYPAQLSGGQKQRVAIARALASN  158 (343)
T ss_pred             HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHcC
Confidence             11244433321        0111            01245677899999986554 5678999999999999998775 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                 +||+.++..+.+.++++    +.|||++|||+++
T Consensus       159 p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~  203 (343)
T PRK11153        159 PKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDV  203 (343)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                       69999999999988764    5799999999764

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.96  E-value=1.9e-29  Score=188.82  Aligned_cols=139  Identities=27%  Similarity=0.320  Sum_probs=103.2

Q ss_pred             hheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------ceeeeccccc
Q 044538           17 LIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------KLRIGRHSRH   79 (158)
Q Consensus        17 ~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------~~~~~~~~~~   79 (158)
                      +.++ ++.|++..  .++++++||+|++|++++|+||||||||||+++|++....               ...+++.++.
T Consensus         3 ~~~l-~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~   81 (220)
T cd03293           3 VRNV-SKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQ   81 (220)
T ss_pred             EEEE-EEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecc
Confidence            3444 88886421  3589999999999999999999999999999999975321               0123333322


Q ss_pred             h--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538           80 L--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------  127 (158)
Q Consensus        80 ~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------  127 (158)
                      .        .+.+.            ..+.+.++++.+++..... +++.+||||||||++||++++.            
T Consensus        82 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~  160 (220)
T cd03293          82 DALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS  160 (220)
T ss_pred             cccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence            1        11110            1245677889999976544 5678999999999999998775            


Q ss_pred             CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +||+.++..+.+.+++.    +.|||++|||+++
T Consensus       161 ~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~  194 (220)
T cd03293         161 ALDALTREQLQEELLDIWRETGKTVLLVTHDIDE  194 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence            69999999999988754    4799999999763

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.7e-29  Score=194.92  Aligned_cols=141  Identities=26%  Similarity=0.347  Sum_probs=106.6

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      ++.+.++ ++.|+.. ..+|+|+||+|.+||+++|+||||||||||+++|++....                    ...+
T Consensus         4 ~l~~~~l-~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   81 (274)
T PRK13647          4 IIEVEDL-HFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV   81 (274)
T ss_pred             eEEEEEE-EEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence            5666666 8888643 3589999999999999999999999999999999964211                    1124


Q ss_pred             eccccchh---------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           74 GRHSRHLE---------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        74 ~~~~~~~~---------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      ++.++...         +.+            ...+++.++++.+++.+... +++.+|||||+||++||+|++.     
T Consensus        82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgG~~qrv~laraL~~~p~ll  160 (274)
T PRK13647         82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRD-KPPYHLSYGQKKRVAIAGVLAMDPDVI  160 (274)
T ss_pred             EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            44443310         011            01245677889999976554 5679999999999999998875     


Q ss_pred             -------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                             +||+.++..+.+.++++   +.|||++|||+++
T Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~  200 (274)
T PRK13647        161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL  200 (274)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence                   69999999999888765   5799999999864

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.96  E-value=1e-29  Score=202.81  Aligned_cols=139  Identities=20%  Similarity=0.292  Sum_probs=104.7

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~   74 (158)
                      +.+.++ ++.|+.  ..+|+++||+|.+|++++|+||||||||||+++|++.....                    ..++
T Consensus         6 l~~~~l-~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig   82 (362)
T TIGR03258         6 IRIDHL-RVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA   82 (362)
T ss_pred             EEEEEE-EEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence            344555 888865  35899999999999999999999999999999999753211                    1133


Q ss_pred             ccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538           75 RHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        75 ~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                      +.+|..        .+++            ...+++.++++.+++.+..+ +++.+|||||||||+||++++.       
T Consensus        83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-~~~~~LSgGq~QRvaLARAL~~~P~llLL  161 (362)
T TIGR03258        83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-HLPAQLSGGMQQRIAIARAIAIEPDVLLL  161 (362)
T ss_pred             EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            333321        1111            11245778899999987655 5679999999999999999875       


Q ss_pred             -----CCCHHHHHHHHHHHhhc-----CCeEEEEeecCCC
Q 044538          128 -----HLDTQSIVAVAVTLDEF-----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----~lD~~~~~~l~~~l~~~-----~~tvi~vtHd~~~  157 (158)
                           +||+..+.++.+.+++.     +.|+|+||||+++
T Consensus       162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e  201 (362)
T TIGR03258       162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD  201 (362)
T ss_pred             cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence                 69999998888877543     5799999999864

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.96  E-value=6.5e-30  Score=209.31  Aligned_cols=146  Identities=23%  Similarity=0.295  Sum_probs=107.6

Q ss_pred             CchhhhhheeeeEEcCC---------CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------
Q 044538           11 TSPMLQLIEVISFSYPN---------LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------   69 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~---------~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------   69 (158)
                      .+|++.+.++ ++.|..         +...+++||||++.+||++||+|+||||||||.|+|++...+            
T Consensus       277 ~~~ll~V~~l-~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~  355 (539)
T COG1123         277 AEPLLSVRNL-SKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL  355 (539)
T ss_pred             cCceeEeeee-eeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc
Confidence            3456667676 888863         124689999999999999999999999999999999864221            


Q ss_pred             ------------ceeeeccccc--hhhHh-------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHH
Q 044538           70 ------------KLRIGRHSRH--LEDLL-------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQK  116 (158)
Q Consensus        70 ------------~~~~~~~~~~--~~~~~-------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  116 (158)
                                  +.++.++..+  +.+..                   ...+++.++++.++++.....+++++||||||
T Consensus       356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr  435 (539)
T COG1123         356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR  435 (539)
T ss_pred             ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence                        1111111111  00111                   11245778899999987444467799999999


Q ss_pred             HHHHHHHHHhh------------CCCHHHHHHHHHHHhh----cCCeEEEEeecCCC
Q 044538          117 VRVMFTLVSMY------------HLDTQSIVAVAVTLDE----FAGGVVLVSHDSRL  157 (158)
Q Consensus       117 qrv~ia~~~l~------------~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~~  157 (158)
                      ||+|||+|+..            .||+..+..+.++|.+    ++.|.||||||+.+
T Consensus       436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v  492 (539)
T COG1123         436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV  492 (539)
T ss_pred             HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence            99999998765            6999999988888865    46899999999865

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.96  E-value=1.9e-29  Score=187.79  Aligned_cols=137  Identities=22%  Similarity=0.310  Sum_probs=102.1

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR   78 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~   78 (158)
                      +.++ ++.|++.  ++++|+||+|++|++++|+||||||||||+++|++....                  ...+++.++
T Consensus         3 ~~~l-~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q   79 (213)
T cd03301           3 LENV-TKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ   79 (213)
T ss_pred             EEee-EEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence            3444 8888653  589999999999999999999999999999999964211                  012344332


Q ss_pred             ch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           79 HL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        79 ~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      ..        .+...            ..+++.++++.+++....+ +++.+||||||||++||++++.           
T Consensus        80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr~~laral~~~p~llllDEPt  158 (213)
T cd03301          80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-RKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL  158 (213)
T ss_pred             ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            21        01110            1234567789999976544 5678999999999999988775           


Q ss_pred             -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                       +||+.++..+.+.++++    +.|||++|||+++
T Consensus       159 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~  193 (213)
T cd03301         159 SNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE  193 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence             69999999999888654    5799999999753

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.8e-29  Score=194.20  Aligned_cols=143  Identities=30%  Similarity=0.398  Sum_probs=108.1

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR   72 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~   72 (158)
                      +++.+.++ ++.|+....++|+++||+|.+||+++|+||||||||||+++|++....                    ...
T Consensus         4 ~~l~~~~l-~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (279)
T PRK13635          4 EIIRVEHI-SFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ   82 (279)
T ss_pred             ceEEEEEE-EEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence            46676666 999975444689999999999999999999999999999999964210                    112


Q ss_pred             eeccccch---------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           73 IGRHSRHL---------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        73 ~~~~~~~~---------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      +++.++..         .+.+.            ..+++.++++.+++..... +++.+||||||||++||++++.    
T Consensus        83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~qrv~laral~~~p~l  161 (279)
T PRK13635         83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-REPHRLSGGQKQRVAIAGVLALQPDI  161 (279)
T ss_pred             eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            44444322         01110            1234677889999986554 5678999999999999998775    


Q ss_pred             --------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                              +||+.++..+.+.++++    +.|||++|||+++
T Consensus       162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~  203 (279)
T PRK13635        162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE  203 (279)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence                    69999999999988754    4699999999764

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.3e-29  Score=194.72  Aligned_cols=142  Identities=25%  Similarity=0.378  Sum_probs=106.3

Q ss_pred             hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538           14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~   72 (158)
                      ++.+.++ +++|+.. ...+|+|+||+|++||+++|+||||||||||+++|++....                    +..
T Consensus         4 ~l~~~~l-~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (279)
T PRK13650          4 IIEVKNL-TFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK   82 (279)
T ss_pred             eEEEEeE-EEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence            5666666 9999642 23589999999999999999999999999999999964210                    012


Q ss_pred             eeccccchh---------hHh---------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           73 IGRHSRHLE---------DLL---------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        73 ~~~~~~~~~---------~~~---------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      +++.++...         +.+         .   ..+++.++++.+++.+..+ +++.+|||||+||++||++++.    
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qrv~lAral~~~p~l  161 (279)
T PRK13650         83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-REPARLSGGQKQRVAIAGAVAMRPKI  161 (279)
T ss_pred             ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            344333210         100         0   1245678899999986554 5678999999999999998775    


Q ss_pred             --------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                              +||+.++..+.+.++++    +.|||++|||+++
T Consensus       162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~  203 (279)
T PRK13650        162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE  203 (279)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                    69999999998887654    5799999999754

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=2e-29  Score=196.14  Aligned_cols=140  Identities=26%  Similarity=0.372  Sum_probs=107.4

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeec
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGR   75 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~   75 (158)
                      +.+.++ ++.|+. ...+|+||||+|++|+++||+||||||||||+++|++...+                   +..+|+
T Consensus         5 i~~~~l-~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy   82 (293)
T COG1131           5 IEVRNL-TKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY   82 (293)
T ss_pred             eeecce-EEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence            344555 888873 23589999999999999999999999999999999964321                   112555


Q ss_pred             cccch--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538           76 HSRHL--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------  127 (158)
Q Consensus        76 ~~~~~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------  127 (158)
                      .++..  .+.++                  ..++++++++.++++... ++++.+||+|||||+.||.+++.        
T Consensus        83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD  161 (293)
T COG1131          83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NKKVRTLSGGMKQRLSIALALLHDPELLILD  161 (293)
T ss_pred             EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-CcchhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            54431  11111                  135688899999998744 46789999999999999988775        


Q ss_pred             ----CCCHHHHHHHHHHHhhc---C-CeEEEEeecCCC
Q 044538          128 ----HLDTQSIVAVAVTLDEF---A-GGVVLVSHDSRL  157 (158)
Q Consensus       128 ----~lD~~~~~~l~~~l~~~---~-~tvi~vtHd~~~  157 (158)
                          +||+.++.++++.++++   + .||+++||.++.
T Consensus       162 EPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e  199 (293)
T COG1131         162 EPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEE  199 (293)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHH
Confidence                79999999999998765   3 599999998764

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.96  E-value=1.8e-29  Score=188.94  Aligned_cols=137  Identities=20%  Similarity=0.264  Sum_probs=102.2

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeeccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRHS   77 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~~   77 (158)
                      +.++ ++.|+.  ..+++|+||++.+||+++|+||||||||||+++|++....                   ...+++.+
T Consensus         3 ~~~~-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (220)
T cd03265           3 VENL-VKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF   79 (220)
T ss_pred             EEEE-EEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence            3444 888864  3589999999999999999999999999999999964211                   01233333


Q ss_pred             cch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538           78 RHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------  127 (158)
Q Consensus        78 ~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------  127 (158)
                      +..        .+.+            ...+++.++++.+++.+..+ +++.+||||||||++||++++.          
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr~~la~al~~~p~llllDEP  158 (220)
T cd03265          80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP  158 (220)
T ss_pred             CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            221        0100            01235677899999976544 5679999999999999988775          


Q ss_pred             --CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 --HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                        +||+.+...+.+.+++.    +.|||++|||.++
T Consensus       159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~  194 (220)
T cd03265         159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE  194 (220)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence              69999999998888653    5799999999764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.6e-29  Score=195.04  Aligned_cols=142  Identities=24%  Similarity=0.314  Sum_probs=104.7

Q ss_pred             hhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           15 LQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        15 l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      +.+.++ ++.|+...   .++|+|+||+|++||+++|+||||||||||+++|++....                      
T Consensus         3 l~~~~l-~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (286)
T PRK13646          3 IRFDNV-SYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEE-EEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            444555 88996422   3589999999999999999999999999999999863210                      


Q ss_pred             --ceeeeccccch----h-----hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           70 --KLRIGRHSRHL----E-----DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        70 --~~~~~~~~~~~----~-----~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                        +..+++.++..    .     +.+            ...+++.++++.+|+.....++++.+||||||||++||++++
T Consensus        82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~  161 (286)
T PRK13646         82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA  161 (286)
T ss_pred             HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence              11244444431    0     000            012456678899999632233567999999999999999887


Q ss_pred             h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .            +||+.++..+.+.++++    +.|||+||||+++
T Consensus       162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~  208 (286)
T PRK13646        162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE  208 (286)
T ss_pred             hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            5            69999999999888764    5799999999764

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.9e-29  Score=196.70  Aligned_cols=144  Identities=19%  Similarity=0.203  Sum_probs=106.7

Q ss_pred             chhhhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------
Q 044538           12 SPMLQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------   69 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------   69 (158)
                      ++++.+.++ ++.|+...   .++|+|+||+|++|++++|+||||||||||+++|++....                   
T Consensus        19 ~~~l~~~nl-~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~   97 (320)
T PRK13631         19 DIILRVKNL-YCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH   97 (320)
T ss_pred             CceEEEEeE-EEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence            457777666 99997431   3589999999999999999999999999999999863210                   


Q ss_pred             -----------------ceeeeccccch----h-----hHh------------hHHHHHHHHHHHcCCC-CCCCCCCCCC
Q 044538           70 -----------------KLRIGRHSRHL----E-----DLL------------TMEEAVHAKLRKFGLP-GHNHLTPIAN  110 (158)
Q Consensus        70 -----------------~~~~~~~~~~~----~-----~~~------------~~~~~~~~~l~~~~l~-~~~~~~~~~~  110 (158)
                                       +..+++.++..    .     +..            ...+++.++++.++++ .... +++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~  176 (320)
T PRK13631         98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLE-RSPFG  176 (320)
T ss_pred             cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhc-CCccc
Confidence                             01133333321    0     000            0123566788999996 3343 56789


Q ss_pred             CChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          111 LSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       111 LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ||||||||++||++++.            +||+.++..+.+.+.+.   +.|||+||||+++
T Consensus       177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~  238 (320)
T PRK13631        177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEH  238 (320)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence            99999999999998875            69999999999888654   5799999999863

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.96  E-value=2.5e-29  Score=190.58  Aligned_cols=140  Identities=29%  Similarity=0.385  Sum_probs=102.8

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ce
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KL   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~   71 (158)
                      +.+.++ ++.|+. ..++++++||++.+|++++|+||||||||||+++|++....                       +.
T Consensus         2 l~~~~l-~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (243)
T TIGR02315         2 LEVENL-SKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR   79 (243)
T ss_pred             eEEEee-eeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence            444555 888862 23589999999999999999999999999999999864210                       01


Q ss_pred             eeeccccch--------hhHh--------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHH
Q 044538           72 RIGRHSRHL--------EDLL--------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTL  123 (158)
Q Consensus        72 ~~~~~~~~~--------~~~~--------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~  123 (158)
                      .+++.++..        .+.+                    ...+++.++++.+++....+ +++.+||||||||++||+
T Consensus        80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~  158 (243)
T TIGR02315        80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-QRADQLSGGQQQRVAIAR  158 (243)
T ss_pred             heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHH
Confidence            133332221        0111                    01235667889999976544 567899999999999999


Q ss_pred             HHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          124 VSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       124 ~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +++.            +||+.++..+.+.+++.    +.|||++|||+++
T Consensus       159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~  208 (243)
T TIGR02315       159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL  208 (243)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            8775            69999999998888664    4699999999864

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.96  E-value=1.1e-29  Score=189.11  Aligned_cols=136  Identities=28%  Similarity=0.420  Sum_probs=101.9

Q ss_pred             heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------ceeeeccccch--
Q 044538           18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------KLRIGRHSRHL--   80 (158)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------~~~~~~~~~~~--   80 (158)
                      .++ ++.|++  ..+++++||+|++|++++|+||||||||||+++|++....               +..+++.++..  
T Consensus         3 ~~l-~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~   79 (213)
T cd03235           3 EDL-TVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI   79 (213)
T ss_pred             ccc-eeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence            344 888864  3589999999999999999999999999999999964321               11233333221  


Q ss_pred             --------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538           81 --------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------  127 (158)
Q Consensus        81 --------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------  127 (158)
                              .+.+                ...+++.++++.+++.+..+ +++.+||||||||++||++++.         
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDE  158 (213)
T cd03235          80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-RQIGELSGGQQQRVLLARALVQDPDLLLLDE  158 (213)
T ss_pred             ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence                    0100                01235667889999976444 5679999999999999988775         


Q ss_pred             ---CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ---HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                         +||+.+...+.+.++++   +.|||++|||+++
T Consensus       159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~  194 (213)
T cd03235         159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL  194 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence               69999999999988765   3699999999764

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=2.6e-29  Score=178.49  Aligned_cols=142  Identities=29%  Similarity=0.294  Sum_probs=105.1

Q ss_pred             hhhhheeeeEEcCC--CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           14 MLQLIEVISFSYPN--LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        14 ~l~~~~~~~~~~~~--~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      ++++.++ +++.+.  ....+|++|+|.|++||.++|+||||||||||+-++++....                      
T Consensus         6 ii~~~~l-~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~   84 (228)
T COG4181           6 IIEVHHL-SKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA   84 (228)
T ss_pred             eeehhhh-hhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence            4455444 555543  345689999999999999999999999999999999864321                      


Q ss_pred             --ceeeeccccch--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538           70 --KLRIGRHSRHL--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY  127 (158)
Q Consensus        70 --~~~~~~~~~~~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~  127 (158)
                        ...+|+++|.+  .+.++                  ....+.++++.+|+..... +++.+|||||+|||+||||+..
T Consensus        85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~-HyP~qLSGGEQQRVAiARAfa~  163 (228)
T COG4181          85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT-HYPAQLSGGEQQRVALARAFAG  163 (228)
T ss_pred             hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccc-cCccccCchHHHHHHHHHHhcC
Confidence              11244444432  11111                  2355788999999987666 4568999999999999998764


Q ss_pred             ------------CCCHHHHHHHHHHHh----hcCCeEEEEeecCCC
Q 044538          128 ------------HLDTQSIVAVAVTLD----EFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------------~lD~~~~~~l~~~l~----~~~~tvi~vtHd~~~  157 (158)
                                  +||.+.-..+.+++-    +.+.|+|+||||..+
T Consensus       164 ~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~L  209 (228)
T COG4181         164 RPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQL  209 (228)
T ss_pred             CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHH
Confidence                        799988888887774    456799999999753

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.4e-29  Score=199.67  Aligned_cols=143  Identities=22%  Similarity=0.256  Sum_probs=105.1

Q ss_pred             hhhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------c--------------
Q 044538           14 MLQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------K--------------   70 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------~--------------   70 (158)
                      ++.+.++ ++.|+...  ..+|+||||+|++||+++|+|+||||||||+++|++....       .              
T Consensus         3 ~L~v~~l-~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~   81 (326)
T PRK11022          3 LLNVDKL-SVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK   81 (326)
T ss_pred             eEEEeCe-EEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence            3566565 88886532  3589999999999999999999999999999999874320       0              


Q ss_pred             -------eeeeccccch----hh------H----h---------hHHHHHHHHHHHcCCCCC--CCCCCCCCCChHHHHH
Q 044538           71 -------LRIGRHSRHL----ED------L----L---------TMEEAVHAKLRKFGLPGH--NHLTPIANLSGGQKVR  118 (158)
Q Consensus        71 -------~~~~~~~~~~----~~------~----~---------~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkqr  118 (158)
                             ..+++.+|..    .+      .    +         ...+++.++++.+|+.+.  ..++++++|||||+||
T Consensus        82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR  161 (326)
T PRK11022         82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR  161 (326)
T ss_pred             HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence                   0134433321    00      0    0         012456788999999742  1234679999999999


Q ss_pred             HHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          119 VMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       119 v~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      |+||+|++.            +||+.++..+++.|+++    +.|+|+||||+++
T Consensus       162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~  216 (326)
T PRK11022        162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLAL  216 (326)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999998875            69999999998888654    5799999999864

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.96  E-value=2.2e-29  Score=193.85  Aligned_cols=142  Identities=24%  Similarity=0.318  Sum_probs=105.3

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      .+++.+.++ ++.|+.  ..+|+++||+|++|++++|+||||||||||+++|++....                      
T Consensus         5 ~~~l~~~~l-~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (269)
T PRK11831          5 ANLVDMRGV-SFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT   81 (269)
T ss_pred             cceEEEeCe-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHH
Confidence            356777776 888864  3589999999999999999999999999999999864210                      


Q ss_pred             -ceeeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538           70 -KLRIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY  127 (158)
Q Consensus        70 -~~~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~  127 (158)
                       ...+++.++..        .+.+.             ..+.+.++++.+++....+ +++.+||||||||++||++++.
T Consensus        82 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrv~laral~~  160 (269)
T PRK11831         82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-LMPSELSGGMARRAALARAIAL  160 (269)
T ss_pred             HhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhc
Confidence             01133332221        11110             0124556789999976544 5679999999999999988775


Q ss_pred             ------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                  +||+.++..+.+.++++    +.|||+||||+++
T Consensus       161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~  206 (269)
T PRK11831        161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPE  206 (269)
T ss_pred             CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence                        69999999998888764    4699999999753

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.96  E-value=6.7e-29  Score=182.00  Aligned_cols=128  Identities=27%  Similarity=0.329  Sum_probs=97.1

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------ceeeeccccch----h--
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KLRIGRHSRHL----E--   81 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~~~~~~~~~~----~--   81 (158)
                      ..+|+++||+|.+|++++|+||||||||||+++|++....                      +..+++.++..    .  
T Consensus         5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   84 (190)
T TIGR01166         5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA   84 (190)
T ss_pred             cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence            3589999999999999999999999999999999863210                      01133333321    0  


Q ss_pred             ---hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH
Q 044538           82 ---DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI  134 (158)
Q Consensus        82 ---~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~  134 (158)
                         +.+.            ..+++.++++.+++.+..+ +++.+||||||||++||++++.            +||+.+.
T Consensus        85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  163 (190)
T TIGR01166        85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR  163 (190)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence               0000            1234567888999976544 5678999999999999988775            6999999


Q ss_pred             HHHHHHHhhc---CCeEEEEeecCCCC
Q 044538          135 VAVAVTLDEF---AGGVVLVSHDSRLI  158 (158)
Q Consensus       135 ~~l~~~l~~~---~~tvi~vtHd~~~~  158 (158)
                      ..+.+.++++   +.|||++|||++++
T Consensus       164 ~~~~~~l~~~~~~~~tili~sH~~~~~  190 (190)
T TIGR01166       164 EQMLAILRRLRAEGMTVVISTHDVDLA  190 (190)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeeccccC
Confidence            9999988765   47999999999874

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.96  E-value=1.9e-29  Score=203.29  Aligned_cols=140  Identities=24%  Similarity=0.398  Sum_probs=106.5

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      ++.+.++ ++.|++  ..+|+++||+|++||+++|+||||||||||+++|++....                    ...+
T Consensus         3 ~L~~~nl-s~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i   79 (402)
T PRK09536          3 MIDVSDL-SVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV   79 (402)
T ss_pred             eEEEeeE-EEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence            5666666 888875  3589999999999999999999999999999999964210                    1123


Q ss_pred             eccccch--------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHL--------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~--------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ++.++..        .+..                ...+++.++++.+++.+..+ +++.+||||||||++||++++.  
T Consensus        80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-~~~~~LSgGerQRv~IArAL~~~P  158 (402)
T PRK09536         80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-RPVTSLSGGERQRVLLARALAQAT  158 (402)
T ss_pred             EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCC
Confidence            4333211        0000                11346778999999986554 6789999999999999998875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                                +||+..+..+++.|+++   +.|||++|||+++
T Consensus       159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~  201 (402)
T PRK09536        159 PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL  201 (402)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence                      69999999888888765   4699999999864

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=7.5e-29  Score=190.85  Aligned_cols=144  Identities=24%  Similarity=0.317  Sum_probs=107.9

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ce
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KL   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~   71 (158)
                      .+++.+.++ ++.|++....+++|+||+|++||+++|+||||||||||+++|++....                    +.
T Consensus         5 ~~~l~i~~l-~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~   83 (269)
T PRK13648          5 NSIIVFKNV-SFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK   83 (269)
T ss_pred             CceEEEEEE-EEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence            457777776 999975434589999999999999999999999999999999964211                    01


Q ss_pred             eeeccccchh---------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           72 RIGRHSRHLE---------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        72 ~~~~~~~~~~---------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      .+++.++...         +..            ...+++.++++.+++.+... +++.+||||||||++||++++.   
T Consensus        84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~  162 (269)
T PRK13648         84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-YEPNALSGGQKQRVAIAGVLALNPS  162 (269)
T ss_pred             heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-CCcccCCHHHHHHHHHHHHHHcCCC
Confidence            1333333210         000            01234667889999976554 5678999999999999998875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                               +||+.+...+.+.+++.    +.|||++|||+++
T Consensus       163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~  205 (269)
T PRK13648        163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE  205 (269)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH
Confidence                     69999999998888764    4699999999865

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.3e-29  Score=193.43  Aligned_cols=143  Identities=26%  Similarity=0.384  Sum_probs=107.3

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------ce---------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------KL---------------   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------~~---------------   71 (158)
                      +++.+.++ ++.|++...++++++||+|++|++++|+||||||||||+++|++....      .+               
T Consensus         4 ~~l~i~~l-~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~   82 (282)
T PRK13640          4 NIVEFKHV-SFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI   82 (282)
T ss_pred             ceEEEEEE-EEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence            35666666 999965334589999999999999999999999999999999975321      11               


Q ss_pred             --eeeccccchh---------hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           72 --RIGRHSRHLE---------DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        72 --~~~~~~~~~~---------~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                        .+++.++...         +.+.            ..+++.++++.+++.+..+ +++.+|||||+||++||++++. 
T Consensus        83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LS~G~~qrv~laral~~~  161 (282)
T PRK13640         83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-SEPANLSGGQKQRVAIAGILAVE  161 (282)
T ss_pred             HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-CCcccCCHHHHHHHHHHHHHHcC
Confidence              1333333210         1110            1134667899999986554 5679999999999999998775 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                 +||+.++..+.+.++++    +.|||++|||+++
T Consensus       162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~  206 (282)
T PRK13640        162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE  206 (282)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                       69999999998888664    4799999999764

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=3.7e-29  Score=185.39  Aligned_cols=140  Identities=26%  Similarity=0.395  Sum_probs=104.3

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----------------eeeec
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K----------------LRIGR   75 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~----------------~~~~~   75 (158)
                      +.+.++ ++.|+.  ..+++++||+|++||+++|+||||||||||+++|++....   .                ..+++
T Consensus         2 l~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~   78 (204)
T PRK13538          2 LEARNL-ACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY   78 (204)
T ss_pred             eEEEEE-EEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence            445555 888865  3589999999999999999999999999999999964211   0                01222


Q ss_pred             cccc--------hhhHh---------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           76 HSRH--------LEDLL---------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        76 ~~~~--------~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      .++.        ..+.+         ...+++.++++.+++.+..+ +++.+||||||||++||++++.           
T Consensus        79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  157 (204)
T PRK13538         79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-VPVRQLSAGQQRRVALARLWLTRAPLWILDEPF  157 (204)
T ss_pred             eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            2211        00111         11245677899999976544 5779999999999999988775           


Q ss_pred             -CCCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538          128 -HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI  158 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~  158 (158)
                       +||+.+...+.+.++++   +.|+|++|||.+++
T Consensus       158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i  192 (204)
T PRK13538        158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPV  192 (204)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhh
Confidence             69999999999988765   57999999998763

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.9e-29  Score=194.09  Aligned_cols=142  Identities=23%  Similarity=0.311  Sum_probs=104.2

Q ss_pred             hhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           15 LQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        15 l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      +.+.++ ++.|++..   ..+++|+||+|++||+++|+||||||||||+++|++....                      
T Consensus         3 i~~~~l-~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          3 IKFENV-DYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEE-EEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            344455 88997421   3589999999999999999999999999999999864210                      


Q ss_pred             --ceeeeccccch---------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           70 --KLRIGRHSRHL---------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        70 --~~~~~~~~~~~---------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                        +..+++.++..         .+.+.            ..+++.++++.+++......+++.+||||||||++||++++
T Consensus        82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~  161 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA  161 (287)
T ss_pred             HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence              01244444321         01110            12346778899999632233677999999999999999877


Q ss_pred             h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      .            +||+.++..+.+.++++   +.|||++|||+++
T Consensus       162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~  207 (287)
T PRK13641        162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD  207 (287)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            5            79999999999888765   4699999999764

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.6e-29  Score=181.13  Aligned_cols=142  Identities=30%  Similarity=0.387  Sum_probs=103.8

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ceee------------ecccc
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLRI------------GRHSR   78 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~~------------~~~~~   78 (158)
                      ++.+.++ +.+|++....+|+|+|++|.+||.++++||||||||||++++++...+   .+.+            |.++|
T Consensus         3 ~l~~~~~-sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ   81 (259)
T COG4525           3 MLNVSHL-SLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ   81 (259)
T ss_pred             eeehhhe-EEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence            3455555 899988766799999999999999999999999999999999975321   1111            11222


Q ss_pred             c--hhhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           79 H--LEDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        79 ~--~~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      .  +.+.++                  ..+.+.+.+..+|+.+..+ +++.+|||||||||.||||+..           
T Consensus        82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~-~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf  160 (259)
T COG4525          82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH-KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF  160 (259)
T ss_pred             cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc-cceEeecchHHHHHHHHHHhhcCcceEeecCch
Confidence            1  111111                  1256778899999988765 5678999999999999998765           


Q ss_pred             -CCCHHHHHHHHH----HHhhcCCeEEEEeecCCC
Q 044538          128 -HLDTQSIVAVAV----TLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 -~lD~~~~~~l~~----~l~~~~~tvi~vtHd~~~  157 (158)
                       .||.-.++.+.+    ..++.+..+++||||+++
T Consensus       161 gAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE  195 (259)
T COG4525         161 GALDALTREQMQELLLDLWQETGKQVLLITHDIEE  195 (259)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH
Confidence             366555554444    445667899999999875

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.96  E-value=2.9e-29  Score=187.38  Aligned_cols=141  Identities=15%  Similarity=0.245  Sum_probs=104.6

Q ss_pred             hhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceee
Q 044538           15 LQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRI   73 (158)
Q Consensus        15 l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~   73 (158)
                      +.+.++ ++.|++..  .++++++||++++|++++|+||||||||||+++|++....                   ...+
T Consensus         2 l~~~~v-~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i   80 (218)
T cd03266           2 ITADAL-TKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL   80 (218)
T ss_pred             eEEEEE-EEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence            445555 88887531  1589999999999999999999999999999999964311                   0113


Q ss_pred             eccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538           74 GRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        74 ~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                      ++.++..        .+..            ...+++.++++.+++.+... +++.+||||||||++||++++.      
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~ill  159 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-RRVGGFSTGMRQKVAIARALVHDPPVLL  159 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-hhhhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence            3333221        1111            01245677899999976544 5678999999999999998775      


Q ss_pred             ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                            +||+.+...+.+.++++   +.|||+||||.++
T Consensus       160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~  198 (218)
T cd03266         160 LDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE  198 (218)
T ss_pred             EcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence                  69999999999988765   4799999999753

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=7.2e-29  Score=191.15  Aligned_cols=143  Identities=29%  Similarity=0.437  Sum_probs=107.2

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR   72 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~   72 (158)
                      +|+.+.++ ++.|+....++|+++||++.+|++++|+||||||||||+++|++....                    +..
T Consensus         6 ~~l~~~nl-~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   84 (271)
T PRK13632          6 VMIKVENV-SFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK   84 (271)
T ss_pred             eEEEEEeE-EEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence            46777676 999964334689999999999999999999999999999999964210                    112


Q ss_pred             eeccccchh---------hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           73 IGRHSRHLE---------DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        73 ~~~~~~~~~---------~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      +++.++...         +.+.            ..+.+.++++.+++.+..+ +++.+|||||+||++||++++.    
T Consensus        85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~l  163 (271)
T PRK13632         85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-KEPQNLSGGQKQRVAIASVLALNPEI  163 (271)
T ss_pred             eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            344333210         1100            1124567888999976554 5678999999999999998775    


Q ss_pred             --------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                              +||+.+...+.+.++++    +.|||++|||+++
T Consensus       164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~  205 (271)
T PRK13632        164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE  205 (271)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH
Confidence                    69999999999988765    3699999999864

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.96  E-value=1.3e-29  Score=209.56  Aligned_cols=146  Identities=37%  Similarity=0.583  Sum_probs=118.8

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---------hcceeeeccccchh
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---------RQKLRIGRHSRHLE   81 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---------~~~~~~~~~~~~~~   81 (158)
                      ..+++.+.++ ++.|++. +.+++++||.|.+|+.+||+||||+|||||+++|++..         .....+||+.|...
T Consensus       318 g~~vl~~~~~-~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~  395 (530)
T COG0488         318 GKLVLEFENV-SKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD  395 (530)
T ss_pred             CCeeEEEecc-ccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh
Confidence            3456777776 9999765 46899999999999999999999999999999996532         23456777766532


Q ss_pred             hHh---h------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH
Q 044538           82 DLL---T------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI  134 (158)
Q Consensus        82 ~~~---~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~  134 (158)
                      ...   +            .+..++.+|..|++......+++..||||||-|+.+|+.++.            |||.+++
T Consensus       396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~  475 (530)
T COG0488         396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL  475 (530)
T ss_pred             hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHH
Confidence            110   0            136678899999998877778999999999999999877654            7999999


Q ss_pred             HHHHHHHhhcCCeEEEEeecCCCC
Q 044538          135 VAVAVTLDEFAGGVVLVSHDSRLI  158 (158)
Q Consensus       135 ~~l~~~l~~~~~tvi~vtHd~~~~  158 (158)
                      ..+.+.|.++.+|||+||||.+|+
T Consensus       476 ~aLe~aL~~f~Gtvl~VSHDr~Fl  499 (530)
T COG0488         476 EALEEALLDFEGTVLLVSHDRYFL  499 (530)
T ss_pred             HHHHHHHHhCCCeEEEEeCCHHHH
Confidence            999999999999999999998763

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.9e-29  Score=200.83  Aligned_cols=139  Identities=22%  Similarity=0.314  Sum_probs=104.8

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH   76 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~   76 (158)
                      +.+.++ ++.|++  ..+|+++||+|++|++++|+||||||||||+++|++....                  ...+++.
T Consensus         4 l~i~~l-~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v   80 (369)
T PRK11000          4 VTLRNV-TKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV   80 (369)
T ss_pred             EEEEEE-EEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEE
Confidence            455555 888865  3589999999999999999999999999999999974321                  1124444


Q ss_pred             ccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538           77 SRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------  127 (158)
Q Consensus        77 ~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------  127 (158)
                      +|..        .+.+            ...+++.++++.+++....+ +++.+|||||||||+||++++.         
T Consensus        81 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE  159 (369)
T PRK11000         81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLDE  159 (369)
T ss_pred             eCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            3321        1111            01245778899999986554 5679999999999999998775         


Q ss_pred             ---CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ---HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                         +||+..+..+.+.++++    +.|+|+||||+++
T Consensus       160 Pts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~  196 (369)
T PRK11000        160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE  196 (369)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence               69999999888877654    5799999999754

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.96  E-value=4.4e-29  Score=187.67  Aligned_cols=143  Identities=24%  Similarity=0.277  Sum_probs=106.5

Q ss_pred             hhhhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538           13 PMLQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------   69 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------   69 (158)
                      +++.+.++ ++.|++..  ..+++++||+|++|++++|+||||||||||+++|++....                     
T Consensus         5 ~~l~~~~l-~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~   83 (228)
T PRK10584          5 NIVEVHHL-KKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA   83 (228)
T ss_pred             ceEEEeee-EEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence            56777666 99997532  2489999999999999999999999999999999964210                     


Q ss_pred             ---ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           70 ---KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        70 ---~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                         ...+++.++..        .+..            ...+++.++++.+++..... +++.+||||||||++||++++
T Consensus        84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Ge~qrl~la~al~  162 (228)
T PRK10584         84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-HLPAQLSGGEQQRVALARAFN  162 (228)
T ss_pred             HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHHHHHHHHHh
Confidence               01233333221        0111            01245677899999976544 567899999999999998877


Q ss_pred             h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .            +||+.+...+.+.++++    +.|||++|||.++
T Consensus       163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  209 (228)
T PRK10584        163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL  209 (228)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            5            69999999999888654    5699999999753

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=6.6e-29  Score=192.22  Aligned_cols=143  Identities=24%  Similarity=0.361  Sum_probs=107.6

Q ss_pred             hhhhhheeeeEEcCCC----CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------
Q 044538           13 PMLQLIEVISFSYPNL----QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------   69 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~----~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------   69 (158)
                      +|+.+.++ +++|+..    .+++|+++||+|++||+++|+||||||||||+++|++....                   
T Consensus         3 ~~l~~~~l-~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~   81 (280)
T PRK13633          3 EMIKCKNV-SYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW   81 (280)
T ss_pred             ceEEEeee-EEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence            46676666 9999742    23589999999999999999999999999999999864210                   


Q ss_pred             --ceeeeccccch---------hhHh---------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           70 --KLRIGRHSRHL---------EDLL---------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        70 --~~~~~~~~~~~---------~~~~---------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                        ...+++.++..         .+.+         .   ..+++.++++.+|+..... +++.+||||||||++||++++
T Consensus        82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~qrv~laral~  160 (280)
T PRK13633         82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-HAPHLLSGGQKQRVAIAGILA  160 (280)
T ss_pred             HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHHHHHHHHH
Confidence              11234433321         0000         0   1245677889999976554 567999999999999999877


Q ss_pred             h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .            +||+.++..+.+.++++    +.|||++|||+++
T Consensus       161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~  207 (280)
T PRK13633        161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE  207 (280)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence            5            69999999999888764    5799999999865

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.96  E-value=3.7e-29  Score=192.40  Aligned_cols=144  Identities=21%  Similarity=0.239  Sum_probs=106.0

Q ss_pred             hhhhhheeeeEEcCCC-------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------
Q 044538           13 PMLQLIEVISFSYPNL-------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------   69 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~-------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------   69 (158)
                      +|+.+.++ +++|++.       ..++|+++||+|++|++++|+||||||||||+++|++....                
T Consensus         3 ~~l~~~~l-~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~   81 (267)
T PRK15112          3 TLLEVRNL-SKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD   81 (267)
T ss_pred             ceEEEece-EEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence            56777776 9888631       23589999999999999999999999999999999964211                


Q ss_pred             ----ceeeeccccch----h------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538           70 ----KLRIGRHSRHL----E------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        70 ----~~~~~~~~~~~----~------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia  122 (158)
                          ...+++.++..    .      +.+             ...+.+.++++.+++.....++++.+||||||||++||
T Consensus        82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la  161 (267)
T PRK15112         82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA  161 (267)
T ss_pred             hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence                01234433321    0      000             01234667899999953333356789999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.++..+.+.+.++    +.|||++|||+++
T Consensus       162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~  212 (267)
T PRK15112        162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGM  212 (267)
T ss_pred             HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence            88775            69999999999888764    5799999999754

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.96  E-value=3.6e-29  Score=189.45  Aligned_cols=139  Identities=27%  Similarity=0.347  Sum_probs=103.2

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH   76 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~   76 (158)
                      +.+.++ ++.|++  ..+|+++||+|++|++++|+||||||||||+++|++....                  ...+++.
T Consensus         3 l~~~~l-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v   79 (239)
T cd03296           3 IEVRNV-SKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV   79 (239)
T ss_pred             EEEEeE-EEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence            445555 888875  3589999999999999999999999999999999964211                  0123333


Q ss_pred             ccch--------hhHh-------------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           77 SRHL--------EDLL-------------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        77 ~~~~--------~~~~-------------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      ++..        .+.+             .   ..+.+.++++.+++..... +++.+||||||||++||++++.     
T Consensus        80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~ll  158 (239)
T cd03296          80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-RYPAQLSGGQRQRVALARALAVEPKVL  158 (239)
T ss_pred             ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            2221        0100             0   1234567889999976544 5678999999999999998775     


Q ss_pred             -------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                             +||+.+...+.+.++++    +.|||++|||+++
T Consensus       159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~  199 (239)
T cd03296         159 LLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEE  199 (239)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence                   69999999999888764    5799999999753

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.1e-29  Score=200.21  Aligned_cols=142  Identities=22%  Similarity=0.304  Sum_probs=106.1

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceee
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRI   73 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~   73 (158)
                      .+++.+.++ ++.|++  ..+|+++||++++|++++|+||||||||||+++|++....                  +..+
T Consensus        17 ~~~l~l~~v-~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i   93 (377)
T PRK11607         17 TPLLEIRNL-TKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI   93 (377)
T ss_pred             CceEEEEeE-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence            346776666 888864  3589999999999999999999999999999999964321                  1124


Q ss_pred             eccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538           74 GRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        74 ~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                      ++.+|..        .+++            ...+++.++++.+++.+..+ +++.+|||||||||+||++++.      
T Consensus        94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~~~~LSgGq~QRVaLARAL~~~P~lLL  172 (377)
T PRK11607         94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-RKPHQLSGGQRQRVALARSLAKRPKLLL  172 (377)
T ss_pred             EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            4444321        1111            01245678899999987655 5679999999999999998775      


Q ss_pred             ------CCCHHHHHHHHHHH----hhcCCeEEEEeecCCC
Q 044538          128 ------HLDTQSIVAVAVTL----DEFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l----~~~~~tvi~vtHd~~~  157 (158)
                            +||...+..+.+.+    ++.+.|+|+||||.++
T Consensus       173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e  212 (377)
T PRK11607        173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEE  212 (377)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence                  69999988777554    3446899999999764

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.5e-29  Score=197.78  Aligned_cols=143  Identities=15%  Similarity=0.251  Sum_probs=105.0

Q ss_pred             hhhhheeeeEEcCC--CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-------cc--------------
Q 044538           14 MLQLIEVISFSYPN--LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-------QK--------------   70 (158)
Q Consensus        14 ~l~~~~~~~~~~~~--~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-------~~--------------   70 (158)
                      ++.+.++ ++.|+.  +...+++|+||+|.+||+++|+|+||||||||+++|++...       ..              
T Consensus         3 ~L~v~~l-~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          3 LLDIRNL-TIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             eEEEeee-EEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence            5566666 888853  22358999999999999999999999999999999987532       00              


Q ss_pred             -------eeeeccccchh----h------Hh------------------hHHHHHHHHHHHcCCCCCC--CCCCCCCCCh
Q 044538           71 -------LRIGRHSRHLE----D------LL------------------TMEEAVHAKLRKFGLPGHN--HLTPIANLSG  113 (158)
Q Consensus        71 -------~~~~~~~~~~~----~------~~------------------~~~~~~~~~l~~~~l~~~~--~~~~~~~LSg  113 (158)
                             ..+++.+|...    +      .+                  ...+++.++++.+|+.+..  .++++.+|||
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg  161 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE  161 (330)
T ss_pred             HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence                   02344333210    0      00                  0123566789999997521  2356689999


Q ss_pred             HHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          114 GQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       114 Gqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ||+|||+||+|++.            +||+.++.++++.|+++    +.|+|+||||+++
T Consensus       162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~  221 (330)
T PRK15093        162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM  221 (330)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            99999999998875            69999999998888763    5799999999764

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.96  E-value=5.7e-29  Score=185.24  Aligned_cols=138  Identities=28%  Similarity=0.425  Sum_probs=101.9

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ceee
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KLRI   73 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~~~   73 (158)
                      +.++ ++.|++. ..+++++||++++|++++|+||||||||||+++|++....                       +..+
T Consensus         3 ~~~l-~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i   80 (214)
T cd03292           3 FINV-TKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI   80 (214)
T ss_pred             EEEE-EEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence            3444 8888643 3589999999999999999999999999999999964211                       0012


Q ss_pred             eccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538           74 GRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        74 ~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                      ++.++..        .+.+            ...+++.++++.++++...+ +++.+||||||||++||++++.      
T Consensus        81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lll  159 (214)
T cd03292          81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-ALPAELSGGEQQRVAIARAIVNSPTILI  159 (214)
T ss_pred             EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence            3322211        0100            01234667889999976544 5678999999999999998775      


Q ss_pred             ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                            +||+.++..+.+.++++   +.|+|++|||.++
T Consensus       160 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~  198 (214)
T cd03292         160 ADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL  198 (214)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence                  79999999999988765   4799999999753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.96  E-value=3.3e-29  Score=197.89  Aligned_cols=145  Identities=18%  Similarity=0.283  Sum_probs=106.3

Q ss_pred             chhhhhheeeeEEcCC--CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------------------
Q 044538           12 SPMLQLIEVISFSYPN--LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------------   70 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~--~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------------   70 (158)
                      .+++++.++ ++.|..  +...+++|+||+|++||+++|+|+||||||||+++|++.....                   
T Consensus        10 ~~~L~i~~l-~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~   88 (330)
T PRK09473         10 DALLDVKDL-RVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE   88 (330)
T ss_pred             CceEEEeCe-EEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence            456777776 888853  2235899999999999999999999999999999998643210                   


Q ss_pred             --------eeeeccccchh----------hH----h------h---HHHHHHHHHHHcCCCCCC--CCCCCCCCChHHHH
Q 044538           71 --------LRIGRHSRHLE----------DL----L------T---MEEAVHAKLRKFGLPGHN--HLTPIANLSGGQKV  117 (158)
Q Consensus        71 --------~~~~~~~~~~~----------~~----~------~---~~~~~~~~l~~~~l~~~~--~~~~~~~LSgGqkq  117 (158)
                              ..+++.+|...          ..    .      .   ..+++.++++.+++++..  ..+++++|||||+|
T Consensus        89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q  168 (330)
T PRK09473         89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ  168 (330)
T ss_pred             HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence                    02344333311          00    0      0   123566788999997421  13466999999999


Q ss_pred             HHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          118 RVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       118 rv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ||+||++++.            +||..++..+++.|+++    +.|+|+||||+++
T Consensus       169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~  224 (330)
T PRK09473        169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGV  224 (330)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            9999998875            69999999888877654    5799999999764

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.96  E-value=3.4e-29  Score=191.12  Aligned_cols=141  Identities=29%  Similarity=0.448  Sum_probs=106.9

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch--h
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL--E   81 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~--~   81 (158)
                      +++.+.++ ++.|++.  .+|+++||+|++|++++|+||||||||||+++|++....         ...+++.++..  .
T Consensus         3 ~~l~~~~l-~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~   79 (251)
T PRK09544          3 SLVSLENV-SVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLD   79 (251)
T ss_pred             cEEEEece-EEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccc
Confidence            35666666 8888753  589999999999999999999999999999999975321         11244444321  1


Q ss_pred             --------hHhh-----HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHH
Q 044538           82 --------DLLT-----MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVA  136 (158)
Q Consensus        82 --------~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~  136 (158)
                              +...     ..+++.++++.+++.+..+ +++.+|||||+||++||++++.            +||+.+...
T Consensus        80 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~  158 (251)
T PRK09544         80 TTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA  158 (251)
T ss_pred             cccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence                    1100     1245677889999976544 5678999999999999988774            699999999


Q ss_pred             HHHHHhhc----CCeEEEEeecCCC
Q 044538          137 VAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       137 l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +.+.+++.    +.|||++|||+++
T Consensus       159 l~~~L~~~~~~~g~tiiivsH~~~~  183 (251)
T PRK09544        159 LYDLIDQLRRELDCAVLMVSHDLHL  183 (251)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHH
Confidence            98888653    5799999999864

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.96  E-value=8e-29  Score=187.51  Aligned_cols=138  Identities=28%  Similarity=0.352  Sum_probs=101.6

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ceee
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KLRI   73 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~~~   73 (158)
                      +.++ ++.|+.. ..+++++||++.+|++++|+||||||||||+++|++....                       ...+
T Consensus         3 ~~~l-~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   80 (241)
T cd03256           3 VENL-SKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI   80 (241)
T ss_pred             EeeE-EEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence            3444 8888642 3589999999999999999999999999999999864210                       0113


Q ss_pred             eccccch--------hhHhh--------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538           74 GRHSRHL--------EDLLT--------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS  125 (158)
Q Consensus        74 ~~~~~~~--------~~~~~--------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~  125 (158)
                      ++.++..        .+.+.                    ..+++.++++.+++..... +++.+||||||||++||+++
T Consensus        81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al  159 (241)
T cd03256          81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-QRADQLSGGQQQRVAIARAL  159 (241)
T ss_pred             EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-CCcccCCHHHHHHHHHHHHH
Confidence            3332210        01110                    1234567889999976544 56789999999999999887


Q ss_pred             hh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          126 MY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       126 l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +.            +||+.+...+.+.+++.    +.|||++|||+++
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~  207 (241)
T cd03256         160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL  207 (241)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            75            69999999999888764    5799999999764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.96  E-value=5e-29  Score=186.34  Aligned_cols=139  Identities=20%  Similarity=0.309  Sum_probs=103.0

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeeccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRHS   77 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~~   77 (158)
                      +.++ ++.|++...++|+++||++++|++++|+||||||||||+++|++....                   ...+++.+
T Consensus         3 ~~~l-~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~   81 (220)
T cd03263           3 IRNL-TKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCP   81 (220)
T ss_pred             EEee-EEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEec
Confidence            3444 888865324589999999999999999999999999999999964211                   01133333


Q ss_pred             cch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538           78 RHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------  127 (158)
Q Consensus        78 ~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------  127 (158)
                      +..        .+.+            ...+++.++++.+++.+..+ +++.+|||||+||++||++++.          
T Consensus        82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEP  160 (220)
T cd03263          82 QFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-KRARTLSGGMKRKLSLAIALIGGPSVLLLDEP  160 (220)
T ss_pred             CcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-ChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            210        1111            01234667889999976544 5678999999999999988775          


Q ss_pred             --CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          128 --HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       128 --~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                        +||+.+...+.+.++++.  .|+|++|||+++
T Consensus       161 ~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~  194 (220)
T cd03263         161 TSGLDPASRRAIWDLILEVRKGRSIILTTHSMDE  194 (220)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence              699999999999887754  699999999764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.96  E-value=9.1e-29  Score=185.85  Aligned_cols=143  Identities=27%  Similarity=0.367  Sum_probs=105.6

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ce
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KL   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~   71 (158)
                      .+++.+.++ ++.|++  .++++|+||+|++||+++|+||||||||||+++|++....                    ..
T Consensus         5 ~~~i~~~~l-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~   81 (225)
T PRK10247          5 SPLLQLQNV-GYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ   81 (225)
T ss_pred             CceEEEecc-EEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHh
Confidence            356777666 888864  3589999999999999999999999999999999964210                    01


Q ss_pred             eeeccccch-------hhHhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538           72 RIGRHSRHL-------EDLLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        72 ~~~~~~~~~-------~~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                      .+++.++..       .+.+.          ..+++.++++.+++.....++++.+|||||+||++||++++.       
T Consensus        82 ~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  161 (225)
T PRK10247         82 QVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLL  161 (225)
T ss_pred             ccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            123332221       11111          123456788999996322335779999999999999988775       


Q ss_pred             -----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                           +||+.++..+.+.++++    +.|||++|||.++
T Consensus       162 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~  200 (225)
T PRK10247        162 DEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE  200 (225)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH
Confidence                 69999999998888764    5699999999864

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.1e-29  Score=208.18  Aligned_cols=142  Identities=26%  Similarity=0.431  Sum_probs=109.5

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch---
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL---   80 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~---   80 (158)
                      +++.+.++ ++.|++.  .+|+++||+|++|++++|+||||||||||+++|++...+         ...+++.++..   
T Consensus       318 ~~l~~~~l-~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~  394 (530)
T PRK15064        318 NALEVENL-TKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD  394 (530)
T ss_pred             ceEEEEee-EEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence            46776666 8888653  489999999999999999999999999999999975321         12345544431   


Q ss_pred             -------hhHhh-------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH
Q 044538           81 -------EDLLT-------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI  134 (158)
Q Consensus        81 -------~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~  134 (158)
                             .+.+.       ..+++.++++.+++.....++++.+||||||||++||++++.            +||+.+.
T Consensus       395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~  474 (530)
T PRK15064        395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESI  474 (530)
T ss_pred             CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence                   11110       123567789999985322346789999999999999988764            7999999


Q ss_pred             HHHHHHHhhcCCeEEEEeecCCC
Q 044538          135 VAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       135 ~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      ..+.+.+++++.|||+||||.++
T Consensus       475 ~~l~~~l~~~~~tvi~vsHd~~~  497 (530)
T PRK15064        475 ESLNMALEKYEGTLIFVSHDREF  497 (530)
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHH
Confidence            99999999988899999999764

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.96  E-value=3.7e-29  Score=185.96  Aligned_cols=137  Identities=20%  Similarity=0.321  Sum_probs=102.0

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------ceeeeccccch
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------KLRIGRHSRHL   80 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------~~~~~~~~~~~   80 (158)
                      +.++ ++.|+.  ..+++++||++.+|++++|+||||||||||+++|++....                ...+++.++..
T Consensus         3 ~~~l-~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~   79 (210)
T cd03269           3 VENV-TKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER   79 (210)
T ss_pred             EEEE-EEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence            3344 788864  3589999999999999999999999999999999974321                11233333221


Q ss_pred             --------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538           81 --------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------H  128 (158)
Q Consensus        81 --------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~  128 (158)
                              .+.+            ...+.+.++++.+++..... +++.+||||||||++||++++.            +
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~  158 (210)
T cd03269          80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG  158 (210)
T ss_pred             cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-CcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence                    1111            01245677889999976544 5678999999999999988765            6


Q ss_pred             CCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ||+.++..+.+.++++   +.|||++|||.++
T Consensus       159 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~  190 (210)
T cd03269         159 LDPVNVELLKDVIRELARAGKTVILSTHQMEL  190 (210)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence            9999999999888765   4699999999753

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.7e-29  Score=208.46  Aligned_cols=140  Identities=21%  Similarity=0.365  Sum_probs=106.1

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c------eeeeccccch-----
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K------LRIGRHSRHL-----   80 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~------~~~~~~~~~~-----   80 (158)
                      +.+.++ +++|+.  .++|+++||+|.+|++++|+||||||||||+++|++....   .      ..+++.++..     
T Consensus         2 l~i~~l-s~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~   78 (530)
T PRK15064          2 LSTANI-TMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE   78 (530)
T ss_pred             EEEEEE-EEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence            455555 888864  3589999999999999999999999999999999975321   1      1234333211     


Q ss_pred             ---hhHh--------------------------------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCCh
Q 044538           81 ---EDLL--------------------------------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSG  113 (158)
Q Consensus        81 ---~~~~--------------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  113 (158)
                         .+..                                            ...+++.++++.+|++....++++.+|||
T Consensus        79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg  158 (530)
T PRK15064         79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP  158 (530)
T ss_pred             CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence               0000                                            01234667889999975433356799999


Q ss_pred             HHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          114 GQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       114 Gqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      ||||||+||++++.            +||+.++.++.+.+.+.+.|||+||||+++
T Consensus       159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~  214 (530)
T PRK15064        159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHF  214 (530)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            99999999988775            799999999999998888899999999764

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.2e-29  Score=190.25  Aligned_cols=144  Identities=23%  Similarity=0.376  Sum_probs=107.1

Q ss_pred             CCchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------
Q 044538           10 STSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------   69 (158)
Q Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------   69 (158)
                      -+++++.+.++ ++.|++  ..+|+++||+|++|++++|+||||||||||+++|++....                    
T Consensus         7 ~~~~~l~i~~l-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~   83 (265)
T PRK10575          7 HSDTTFALRNV-SFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF   83 (265)
T ss_pred             CCCceEEEeeE-EEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence            34467777776 888864  3589999999999999999999999999999999964210                    


Q ss_pred             ceeeeccccc--------hhhHhh----------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538           70 KLRIGRHSRH--------LEDLLT----------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS  125 (158)
Q Consensus        70 ~~~~~~~~~~--------~~~~~~----------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~  125 (158)
                      ...+++.++.        ..+.+.                ..+++.++++.+++..... +++.+|||||+||++||+++
T Consensus        84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral  162 (265)
T PRK10575         84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-RLVDSLSGGERQRAWIAMLV  162 (265)
T ss_pred             hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-CCcccCCHHHHHHHHHHHHH
Confidence            0113333321        011110                1234677889999976444 56789999999999999887


Q ss_pred             hh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          126 MY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       126 l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +.            +||+.+...+.+.+.++    +.|||++|||+++
T Consensus       163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~  210 (265)
T PRK10575        163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM  210 (265)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            75            69999999888888654    5799999999764

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.96  E-value=4.2e-29  Score=185.39  Aligned_cols=137  Identities=19%  Similarity=0.235  Sum_probs=102.3

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR   78 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~   78 (158)
                      +.++ +++|++  .++++++||++++|++++|+||||||||||+++|++....                  ...+++.++
T Consensus         3 ~~~l-~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (208)
T cd03268           3 TNDL-TKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE   79 (208)
T ss_pred             EEEE-EEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence            3444 888864  3589999999999999999999999999999999964211                  011333332


Q ss_pred             ch--h------hHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538           79 HL--E------DLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLD  130 (158)
Q Consensus        79 ~~--~------~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD  130 (158)
                      ..  .      +.+.        ..+++.++++.+++..... +++.+||||||||++||++++.            +||
T Consensus        80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD  158 (208)
T cd03268          80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD  158 (208)
T ss_pred             CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence            21  1      1110        1245677889999976544 5678999999999999988775            699


Q ss_pred             HHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          131 TQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       131 ~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      +.++..+.+.+++.   +.|+|++|||+++
T Consensus       159 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~~  188 (208)
T cd03268         159 PDGIKELRELILSLRDQGITVLISSHLLSE  188 (208)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            99999999888764   4799999999764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=9.1e-29  Score=191.71  Aligned_cols=142  Identities=24%  Similarity=0.346  Sum_probs=106.9

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------c
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------K   70 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~   70 (158)
                      +++.+.++ ++.|+.+ ..+++++||+|.+||+++|+||||||||||+++|++....                      +
T Consensus         4 ~~l~~~~l-~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~   81 (283)
T PRK13636          4 YILKVEEL-NYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR   81 (283)
T ss_pred             ceEEEEeE-EEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence            46777666 9999632 3589999999999999999999999999999999964210                      0


Q ss_pred             eeeeccccchh---------hHh---------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           71 LRIGRHSRHLE---------DLL---------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        71 ~~~~~~~~~~~---------~~~---------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ..+++.++...         +.+         .   ..+++.++++.+++....+ +++.+|||||+||++||++++.  
T Consensus        82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~qrl~laraL~~~p  160 (283)
T PRK13636         82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-KPTHCLSFGQKKRVAIAGVLVMEP  160 (283)
T ss_pred             hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-CCcccCCHHHHHHHHHHHHHHcCC
Confidence            12444433210         000         0   1245677889999976554 6779999999999999998875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                +||+.++..+.+.++++    +.|||++|||+++
T Consensus       161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~  204 (283)
T PRK13636        161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI  204 (283)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence                      69999999888887654    5799999999764

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.96  E-value=1e-28  Score=186.66  Aligned_cols=139  Identities=27%  Similarity=0.381  Sum_probs=103.4

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----------------eeeec
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K----------------LRIGR   75 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~----------------~~~~~   75 (158)
                      +.+.++ +++|++  ..+|+++||+|.+|++++|+||||||||||+++|++....   .                ..+++
T Consensus         2 l~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~   78 (236)
T TIGR03864         2 LEVAGL-SFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV   78 (236)
T ss_pred             EEEEee-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence            344555 888864  3589999999999999999999999999999999964211   0                01333


Q ss_pred             cccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538           76 HSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------  127 (158)
Q Consensus        76 ~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------  127 (158)
                      .++..        .+.+.            ..+.+.++++.+|+....+ +++.+|||||+||++||++++.        
T Consensus        79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllD  157 (236)
T TIGR03864        79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERAD-DKVRELNGGHRRRVEIARALLHRPALLLLD  157 (236)
T ss_pred             eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            32211        01110            1234667889999976554 5678999999999999998775        


Q ss_pred             ----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                          +||+.++..+.+.++++    +.|+|++|||+++
T Consensus       158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~  195 (236)
T TIGR03864       158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE  195 (236)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence                69999999999888654    4699999999875

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.96  E-value=7.2e-29  Score=177.69  Aligned_cols=136  Identities=30%  Similarity=0.400  Sum_probs=98.3

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---ee---------------eecc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LR---------------IGRH   76 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~---------------~~~~   76 (158)
                      +.+.++ .+.|+..  +  =.++++|++||+++|+||||||||||+++++|...+.   +.               ++..
T Consensus         2 l~L~~V-~~~y~~~--~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml   76 (231)
T COG3840           2 LALDDV-RFSYGHL--P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML   76 (231)
T ss_pred             ccccce-EEeeCcc--e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence            344444 7777543  2  2689999999999999999999999999999753211   11               1111


Q ss_pred             cc--chhhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538           77 SR--HLEDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------  127 (158)
Q Consensus        77 ~~--~~~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------  127 (158)
                      +|  +++..++                  ..++++.++.++|+.+... +.+.+|||||||||++||.++.         
T Consensus        77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~-RLP~~LSGGqRQRvALARclvR~~PilLLDE  155 (231)
T COG3840          77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLK-RLPGELSGGQRQRVALARCLVREQPILLLDE  155 (231)
T ss_pred             hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhh-hCccccCchHHHHHHHHHHHhccCCeEEecC
Confidence            11  1111111                  1367888999999998776 4558999999999999988765         


Q ss_pred             ---CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538          128 ---HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR  156 (158)
Q Consensus       128 ---~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~  156 (158)
                         .|||.-+.++..++.+.    +.|++||||..+
T Consensus       156 PFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~  191 (231)
T COG3840         156 PFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE  191 (231)
T ss_pred             chhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence               59998888888777554    479999999875

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.5e-29  Score=191.79  Aligned_cols=140  Identities=24%  Similarity=0.331  Sum_probs=103.7

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------ce
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KL   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~   71 (158)
                      |+.+.++ ++.|++  ..+|+++||+|.+|++++|+||||||||||+++|++....                      +.
T Consensus         1 ml~~~~l-~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   77 (271)
T PRK13638          1 MLATSDL-WFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ   77 (271)
T ss_pred             CeEEEEE-EEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh
Confidence            3455555 888864  3589999999999999999999999999999999863210                      01


Q ss_pred             eeeccccch---------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           72 RIGRHSRHL---------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        72 ~~~~~~~~~---------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      .+++.++..         .+.+.            ..+.+.++++.+++.+... +++.+||||||||++||++++.   
T Consensus        78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~laraL~~~p~  156 (271)
T PRK13638         78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-QPIQCLSHGQKKRVAIAGALVLQAR  156 (271)
T ss_pred             heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-CCchhCCHHHHHHHHHHHHHHcCCC
Confidence            234433321         00000            1134556888899876544 5678999999999999988775   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                               +||+.++..+.+.++++   +.|||++|||+++
T Consensus       157 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~  198 (271)
T PRK13638        157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL  198 (271)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence                     69999999999888765   4699999999754

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.1e-28  Score=190.81  Aligned_cols=142  Identities=23%  Similarity=0.273  Sum_probs=103.3

Q ss_pred             hhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           15 LQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        15 l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      +.+.++ ++.|++..   .++|+++||+|++|++++|+||||||||||+++|++....                      
T Consensus         3 l~~~~l-~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (280)
T PRK13649          3 INLQNV-SYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK   81 (280)
T ss_pred             EEEEEE-EEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence            445555 88886432   3589999999999999999999999999999999864210                      


Q ss_pred             --ceeeeccccch----h-----hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           70 --KLRIGRHSRHL----E-----DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        70 --~~~~~~~~~~~----~-----~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                        +..+++.++..    .     +.+.            ..+.+.++++.+++.....++++.+||||||||++||++++
T Consensus        82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~  161 (280)
T PRK13649         82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA  161 (280)
T ss_pred             HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence              01234443321    0     1000            11235567888999643334577999999999999998877


Q ss_pred             h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      .            +||+.++..+.+.++++   +.|||++|||+++
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~  207 (280)
T PRK13649        162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDD  207 (280)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence            5            69999999999988765   4799999999753

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.96  E-value=6.2e-29  Score=190.94  Aligned_cols=143  Identities=22%  Similarity=0.330  Sum_probs=104.0

Q ss_pred             hhhhheeeeEEcCCC-------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------
Q 044538           14 MLQLIEVISFSYPNL-------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------   69 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~-------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------   69 (158)
                      |+.+.++ ++.|+..       ...+|+|+||+|++||+++|+||||||||||+++|++....                 
T Consensus         2 ~l~~~~l-~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~   80 (265)
T TIGR02769         2 LLEVRDV-THTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR   80 (265)
T ss_pred             eEEEEeE-EEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCH
Confidence            3455555 8888631       24689999999999999999999999999999999864210                 


Q ss_pred             ------ceeeeccccch----h------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHH
Q 044538           70 ------KLRIGRHSRHL----E------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVM  120 (158)
Q Consensus        70 ------~~~~~~~~~~~----~------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~  120 (158)
                            +..+++.++..    .      +.+             ...+++.++++.+++.....++++.+||||||||++
T Consensus        81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~  160 (265)
T TIGR02769        81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN  160 (265)
T ss_pred             HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence                  01244433321    0      000             012356778899999633333567899999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.+...+.+.++++    +.|||++|||+++
T Consensus       161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~  213 (265)
T TIGR02769       161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRL  213 (265)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            9998875            69999998888888654    5799999999754

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.96  E-value=5.1e-29  Score=192.10  Aligned_cols=141  Identities=22%  Similarity=0.302  Sum_probs=102.7

Q ss_pred             hhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-c--c--------------------
Q 044538           16 QLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-Q--K--------------------   70 (158)
Q Consensus        16 ~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-~--~--------------------   70 (158)
                      ++.|+ ++.|...  ...+++||||++++||++||+|+|||||||+.+.|++... .  .                    
T Consensus         3 ~v~nL-~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~   81 (316)
T COG0444           3 EVKNL-SVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE   81 (316)
T ss_pred             eEeee-EEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence            44454 7777542  3468999999999999999999999999999999885332 1  0                    


Q ss_pred             ------eeeeccccchhhH----h--------------------hHHHHHHHHHHHcCCCCC--CCCCCCCCCChHHHHH
Q 044538           71 ------LRIGRHSRHLEDL----L--------------------TMEEAVHAKLRKFGLPGH--NHLTPIANLSGGQKVR  118 (158)
Q Consensus        71 ------~~~~~~~~~~~~~----~--------------------~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkqr  118 (158)
                            ..+++.+|+....    +                    ...+++.++|+.+|+++.  ..+.++++|||||+||
T Consensus        82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR  161 (316)
T COG0444          82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR  161 (316)
T ss_pred             HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence                  0133333331110    0                    012457788999999864  2345679999999999


Q ss_pred             HHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          119 VMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       119 v~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      |.||.|++.            +||...+.+++++|+++    +.++|+||||+..
T Consensus       162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v  216 (316)
T COG0444         162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV  216 (316)
T ss_pred             HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999988765            59999888888887654    5799999999864

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.96  E-value=5.9e-29  Score=211.04  Aligned_cols=143  Identities=25%  Similarity=0.452  Sum_probs=109.9

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch--
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL--   80 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~--   80 (158)
                      .+++.+.++ ++.|+.  .++|+++||+|.+|++++|+||||||||||+++|++...+         ...++++++..  
T Consensus       317 ~~~l~~~~l-~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~  393 (635)
T PRK11147        317 KIVFEMENV-NYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE  393 (635)
T ss_pred             CceEEEeee-EEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccc
Confidence            456776666 888865  3589999999999999999999999999999999975321         22355554421  


Q ss_pred             -------hhHhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538           81 -------EDLLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT  131 (158)
Q Consensus        81 -------~~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~  131 (158)
                             .+.+.          ....+..++..+++......+++.+|||||||||+||++++.            +||+
T Consensus       394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~  473 (635)
T PRK11147        394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV  473 (635)
T ss_pred             cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence                   11110          023456778888886433346789999999999999988764            7999


Q ss_pred             HHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          132 QSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       132 ~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      .+...+.+.+++++.|||+||||.++
T Consensus       474 ~~~~~l~~~l~~~~~tvi~vSHd~~~  499 (635)
T PRK11147        474 ETLELLEELLDSYQGTVLLVSHDRQF  499 (635)
T ss_pred             HHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            99999999999988899999999764

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.96  E-value=1.2e-28  Score=188.69  Aligned_cols=142  Identities=20%  Similarity=0.256  Sum_probs=104.6

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------c------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------K------------   70 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------~------------   70 (158)
                      +++.+.++ ++.|++  ..+++++||+|++|++++|+||||||||||+++|++....          .            
T Consensus         5 ~~l~~~~l-~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~   81 (258)
T PRK11701          5 PLLSVRGL-TKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA   81 (258)
T ss_pred             ceEEEeee-EEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence            46777666 888865  3589999999999999999999999999999999964210          0            


Q ss_pred             -------eeeeccccchh----------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHH
Q 044538           71 -------LRIGRHSRHLE----------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVM  120 (158)
Q Consensus        71 -------~~~~~~~~~~~----------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~  120 (158)
                             ..+++.++...          +..             ...+.+.++++.+++.....++++.+|||||+||++
T Consensus        82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~  161 (258)
T PRK11701         82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ  161 (258)
T ss_pred             HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence                   01344333210          000             012345678889999642223567999999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.+...+.+.+++.    +.|||++|||.++
T Consensus       162 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~  214 (258)
T PRK11701        162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV  214 (258)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            9998775            69999999998887653    5799999999764

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.96  E-value=7.4e-29  Score=186.18  Aligned_cols=142  Identities=23%  Similarity=0.296  Sum_probs=100.8

Q ss_pred             hhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------
Q 044538           15 LQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------   69 (158)
Q Consensus        15 l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------   69 (158)
                      +.+.++ ++.|+...  .++++++||+|++|++++|+||||||||||+++|++....                       
T Consensus         2 l~~~~v-~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (228)
T cd03257           2 LEVKNL-SVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR   80 (228)
T ss_pred             eEEEee-eEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence            344555 88886431  2589999999999999999999999999999999864210                       


Q ss_pred             ceeeeccccch----h------hHhh----------HH---HH-HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538           70 KLRIGRHSRHL----E------DLLT----------ME---EA-VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS  125 (158)
Q Consensus        70 ~~~~~~~~~~~----~------~~~~----------~~---~~-~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~  125 (158)
                      +..+++.++..    .      +.+.          ..   +. +.++++.+++.....++++.+||||||||++||+++
T Consensus        81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  160 (228)
T cd03257          81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL  160 (228)
T ss_pred             hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence            01234333321    0      1100          00   11 136778888853222356789999999999999887


Q ss_pred             hh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          126 MY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       126 l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +.            +||+.++..+.+.++++    +.|||++|||+++
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  208 (228)
T cd03257         161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV  208 (228)
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            75            69999999999888664    5799999999753

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.96  E-value=1.4e-28  Score=184.75  Aligned_cols=138  Identities=26%  Similarity=0.356  Sum_probs=102.2

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh-----hcc---e-----------------
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR-----RQK---L-----------------   71 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~-----~~~---~-----------------   71 (158)
                      +.++ ++.|+..  ++|+++||+|.+||+++|+||||||||||+++|++..     ...   +                 
T Consensus         3 ~~~l-~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (227)
T cd03260           3 LRDL-NVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL   79 (227)
T ss_pred             EEEE-EEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence            3444 8888653  5899999999999999999999999999999999865     210   0                 


Q ss_pred             --eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCCCCCCC-CCCCChHHHHHHHHHHHHhh-
Q 044538           72 --RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGHNHLTP-IANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        72 --~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~-~~~LSgGqkqrv~ia~~~l~-  127 (158)
                        .+++.++..       .+.+.             ..+++.++++.+++.......+ +.+||||||||++||++++. 
T Consensus        80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~  159 (227)
T cd03260          80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE  159 (227)
T ss_pred             HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence              123322221       01100             1234567889999976544333 58999999999999988775 


Q ss_pred             -----------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                                 +||+.++..+.+.+++..  .|||++|||+++
T Consensus       160 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~  202 (227)
T cd03260         160 PEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQ  202 (227)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHH
Confidence                       699999999999987764  599999999764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5.5e-29  Score=211.18  Aligned_cols=140  Identities=24%  Similarity=0.399  Sum_probs=105.3

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccc------
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRH------   79 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~------   79 (158)
                      +.+.++ +++|+..  .+|+|+||+|.+|++++|+||||||||||+++|++....         ...+++..+.      
T Consensus         2 i~i~nl-s~~~g~~--~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~   78 (638)
T PRK10636          2 IVFSSL-QIRRGVR--VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ   78 (638)
T ss_pred             EEEEEE-EEEeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence            455555 8888653  589999999999999999999999999999999975321         1112222110      


Q ss_pred             -----hhh------Hh-----------------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHH
Q 044538           80 -----LED------LL-----------------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRV  119 (158)
Q Consensus        80 -----~~~------~~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv  119 (158)
                           ...      .+                             ....++..+++.+|+.....++++.+|||||||||
T Consensus        79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv  158 (638)
T PRK10636         79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRL  158 (638)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHH
Confidence                 000      00                             01235667788999963333467899999999999


Q ss_pred             HHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          120 MFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       120 ~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      +||++++.            +||+.+..++.+.|++++.|||+||||+++
T Consensus       159 ~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~  208 (638)
T PRK10636        159 NLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDF  208 (638)
T ss_pred             HHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            99988774            799999999999999998999999999865

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.96  E-value=7.8e-29  Score=206.50  Aligned_cols=145  Identities=20%  Similarity=0.310  Sum_probs=108.2

Q ss_pred             chhhhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------c-----------
Q 044538           12 SPMLQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------K-----------   70 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~-----------   70 (158)
                      .||+++.++ ++.|+..  ...+|+++||+|.+||+++|+||||||||||+++|++....        .           
T Consensus         3 ~~~l~~~~l-~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~   81 (529)
T PRK15134          3 QPLLAIENL-SVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA   81 (529)
T ss_pred             CceEEEece-EEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence            357777776 9999632  23589999999999999999999999999999999875321        0           


Q ss_pred             ----------eeeeccccch----hhHh-------------------hHHHHHHHHHHHcCCCCCC--CCCCCCCCChHH
Q 044538           71 ----------LRIGRHSRHL----EDLL-------------------TMEEAVHAKLRKFGLPGHN--HLTPIANLSGGQ  115 (158)
Q Consensus        71 ----------~~~~~~~~~~----~~~~-------------------~~~~~~~~~l~~~~l~~~~--~~~~~~~LSgGq  115 (158)
                                ..+++.+|..    .+..                   ...+++.++++.+++.+..  .++++.+|||||
T Consensus        82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe  161 (529)
T PRK15134         82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE  161 (529)
T ss_pred             CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence                      1244444331    0000                   0124567789999997521  235679999999


Q ss_pred             HHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          116 KVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       116 kqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ||||+||++++.            +||+.+..++.+.++++    +.|||+||||+++
T Consensus       162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~  219 (529)
T PRK15134        162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI  219 (529)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH
Confidence            999999998875            69999999999888763    5799999999864

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.96  E-value=9.1e-29  Score=196.83  Aligned_cols=139  Identities=26%  Similarity=0.340  Sum_probs=104.7

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH   76 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~   76 (158)
                      +.+.++ ++.|++  ..+++++||+|.+||+++|+||||||||||+++|++....                  ...+++.
T Consensus         3 L~i~~l-~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v   79 (353)
T PRK10851          3 IEIANI-KKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV   79 (353)
T ss_pred             EEEEEE-EEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence            444455 888865  3589999999999999999999999999999999964211                  1124443


Q ss_pred             ccch--h------hHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           77 SRHL--E------DLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        77 ~~~~--~------~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      +|..  .      +++                ...+++.++++.+++++..+ +++.+|||||||||+||++++.     
T Consensus        80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGq~QRvalArAL~~~P~ll  158 (353)
T PRK10851         80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-RYPAQLSGGQKQRVALARALAVEPQIL  158 (353)
T ss_pred             ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            3321  0      000                01246778899999987655 5679999999999999999875     


Q ss_pred             -------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                             +||+..+..+.+.+++.    +.|+|+||||+++
T Consensus       159 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~e  199 (353)
T PRK10851        159 LLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEE  199 (353)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                   69999998888887654    5799999999864

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.96  E-value=4.1e-29  Score=206.63  Aligned_cols=139  Identities=32%  Similarity=0.480  Sum_probs=108.6

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---------cceeeeccccchhhH-
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---------QKLRIGRHSRHLEDL-   83 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---------~~~~~~~~~~~~~~~-   83 (158)
                      ++.+.++ ++.|+.  +++|+++||+|.+|+++||||+||||||||+++|++...         ...++++..|..... 
T Consensus         3 ~i~~~~l-s~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~   79 (530)
T COG0488           3 MITLENL-SLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP   79 (530)
T ss_pred             eEEEeee-EEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence            4555555 888854  358999999999999999999999999999999997532         223455554431100 


Q ss_pred             -------------------------------------------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChH
Q 044538           84 -------------------------------------------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGG  114 (158)
Q Consensus        84 -------------------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  114 (158)
                                                                       ++.+.++..++..+|++..  .+++++||||
T Consensus        80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSGG  157 (530)
T COG0488          80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGG  157 (530)
T ss_pred             CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCHH
Confidence                                                             0012345667777888765  4788999999


Q ss_pred             HHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          115 QKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       115 qkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      ||.||+||++++.            |||..++.++.+.|.++.+|+|+||||.+|
T Consensus       158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~F  212 (530)
T COG0488         158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYF  212 (530)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHH
Confidence            9999999988774            799999999999999998899999999876

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.96  E-value=1.2e-28  Score=188.44  Aligned_cols=143  Identities=21%  Similarity=0.320  Sum_probs=106.4

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      ++++.+.++ ++.|++  ..+++++||+|++|++++|+||||||||||+++|++....                      
T Consensus         3 ~~~l~~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (257)
T PRK10619          3 ENKLNVIDL-HKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL   79 (257)
T ss_pred             CccEEEeee-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence            346676666 899874  3589999999999999999999999999999999864210                      


Q ss_pred             -----------ceeeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHH
Q 044538           70 -----------KLRIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKV  117 (158)
Q Consensus        70 -----------~~~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  117 (158)
                                 ...+++.++..        .+.+.             ..+++.++++.+|+......+++.+|||||||
T Consensus        80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q  159 (257)
T PRK10619         80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ  159 (257)
T ss_pred             ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence                       01133332221        11110             12346678999999765323567899999999


Q ss_pred             HHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          118 RVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       118 rv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      |++||++++.            +||+.+...+.+.++++   +.|||+||||.++
T Consensus       160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~  214 (257)
T PRK10619        160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF  214 (257)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            9999998875            69999999999887664   5799999999764

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.96  E-value=1.2e-28  Score=186.69  Aligned_cols=138  Identities=22%  Similarity=0.324  Sum_probs=100.2

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---h--cc------------------eee
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---R--QK------------------LRI   73 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---~--~~------------------~~~   73 (158)
                      +.++ ++.|++  ..+|+|+||+|++|++++|+||||||||||+++|++..   .  ..                  ..+
T Consensus         3 ~~~l-~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   79 (243)
T TIGR01978         3 IKDL-HVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL   79 (243)
T ss_pred             EeeE-EEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence            3444 888864  35899999999999999999999999999999999862   1  00                  012


Q ss_pred             eccccch--------hhHh----------------h---HHHHHHHHHHHcCCCCCCCCCCCC-CCChHHHHHHHHHHHH
Q 044538           74 GRHSRHL--------EDLL----------------T---MEEAVHAKLRKFGLPGHNHLTPIA-NLSGGQKVRVMFTLVS  125 (158)
Q Consensus        74 ~~~~~~~--------~~~~----------------~---~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~ia~~~  125 (158)
                      ++.++..        .+.+                .   ..+++.++++.++++....++++. +||||||||++||+++
T Consensus        80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al  159 (243)
T TIGR01978        80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA  159 (243)
T ss_pred             EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence            3322221        0000                0   023456788889997432334555 5999999999999887


Q ss_pred             hh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          126 MY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       126 l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      +.            +||+.++..+.+.++++   +.|||++|||+++
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~  206 (243)
T TIGR01978       160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL  206 (243)
T ss_pred             hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH
Confidence            75            69999999999988776   4699999999764

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.8e-28  Score=189.32  Aligned_cols=140  Identities=26%  Similarity=0.418  Sum_probs=104.9

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------cee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KLR   72 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~~   72 (158)
                      +.+.++ ++.|++. ..+++++||+|.+||+++|+||||||||||+++|++....                      ...
T Consensus         2 l~~~~l-~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (275)
T PRK13639          2 LETRDL-KYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT   79 (275)
T ss_pred             EEEEEE-EEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence            445555 8888643 3589999999999999999999999999999999864210                      011


Q ss_pred             eeccccchh---------hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           73 IGRHSRHLE---------DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        73 ~~~~~~~~~---------~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      +++.++...         +.+.            ..+++.++++.+++.+..+ +++.+|||||+||++||++++.    
T Consensus        80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LS~Gq~qrv~laral~~~p~l  158 (275)
T PRK13639         80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-KPPHHLSGGQKKRVAIAGILAMKPEI  158 (275)
T ss_pred             eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            344333310         0000            1235667889999976554 5779999999999999998775    


Q ss_pred             --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                              +||+.++..+.+.++++   +.|||++|||+++
T Consensus       159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~  199 (275)
T PRK13639        159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL  199 (275)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence                    69999999999888765   4799999999764

>PRK10908 cell division protein FtsE; Provisional

Probab=99.96  E-value=1.6e-28  Score=183.99  Aligned_cols=140  Identities=26%  Similarity=0.321  Sum_probs=102.5

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ce
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KL   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~   71 (158)
                      +.+.++ ++.|+.. ..+++++||+|++|++++|+||||||||||+++|++....                       +.
T Consensus         2 l~~~~l-~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   79 (222)
T PRK10908          2 IRFEHV-SKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR   79 (222)
T ss_pred             EEEEee-EEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence            445555 8888432 3589999999999999999999999999999999864210                       01


Q ss_pred             eeeccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           72 RIGRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        72 ~~~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      .+++.++..        .+.+.            ..+.+.++++.+++.+..+ +++.+||||||||++||++++.    
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~l  158 (222)
T PRK10908         80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-NFPIQLSGGEQQRVGIARAVVNKPAV  158 (222)
T ss_pred             heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CCchhCCHHHHHHHHHHHHHHcCCCE
Confidence            133332221        01110            1124567889999976544 5678999999999999988775    


Q ss_pred             --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                              +||+.++..+.+.++++   +.|+|++|||+++
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  199 (222)
T PRK10908        159 LLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL  199 (222)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence                    69999999888888765   4799999999764

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.96  E-value=1.3e-28  Score=185.67  Aligned_cols=141  Identities=27%  Similarity=0.368  Sum_probs=103.5

Q ss_pred             hhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------
Q 044538           15 LQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------   69 (158)
Q Consensus        15 l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------   69 (158)
                      +.+.++ ++.|++..  .++++++||+|++|++++|+||||||||||+++|++....                       
T Consensus         2 i~~~~l-~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (233)
T cd03258           2 IELKNV-SKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA   80 (233)
T ss_pred             eEEecc-eEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence            445555 88886531  2589999999999999999999999999999999864210                       


Q ss_pred             ceeeeccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           70 KLRIGRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        70 ~~~~~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ...+++.++..        .+.+.            ..+.+.++++.+++.+... +++.+|||||+||++||++++.  
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p  159 (233)
T cd03258          81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-AYPAQLSGGQKQRVGIARALANNP  159 (233)
T ss_pred             HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-cChhhCCHHHHHHHHHHHHHhcCC
Confidence            01133332221        11110            1234667889999976544 5678999999999999988775  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                +||+.++..+.+.++++    +.|||++|||.++
T Consensus       160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~  203 (233)
T cd03258         160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV  203 (233)
T ss_pred             CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence                      69999999999888654    5699999999754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.4e-28  Score=189.87  Aligned_cols=140  Identities=29%  Similarity=0.395  Sum_probs=103.9

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRI   73 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~   73 (158)
                      +.+.++ ++.|+.. ..+|+|+||+|++|++++|+||||||||||+++|++....                     ...+
T Consensus         2 l~~~~l-~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (274)
T PRK13644          2 IRLENV-SYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV   79 (274)
T ss_pred             EEEEEE-EEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence            445555 8888543 3489999999999999999999999999999999964210                     0113


Q ss_pred             eccccchh---------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           74 GRHSRHLE---------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        74 ~~~~~~~~---------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      ++.++...         +.+            ...+.+.++++.+++....+ +++.+|||||+||++||++++.     
T Consensus        80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~ll  158 (274)
T PRK13644         80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-RSPKTLSGGQGQCVALAGILTMEPECL  158 (274)
T ss_pred             EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            33333210         100            01245667889999976544 5679999999999999998775     


Q ss_pred             -------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                             +||+.++..+++.++++   +.|||++|||+++
T Consensus       159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~  198 (274)
T PRK13644        159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE  198 (274)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence                   69999999999888654   4799999999764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.96  E-value=1.1e-28  Score=196.76  Aligned_cols=127  Identities=22%  Similarity=0.262  Sum_probs=97.7

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeeeccccch-----
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIGRHSRHL-----   80 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~~~~~~~-----   80 (158)
                      +.+++|+||+|++||+++|+||||||||||+++|++....                        +..+++.+|..     
T Consensus         6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~   85 (363)
T TIGR01186         6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH   85 (363)
T ss_pred             ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence            3589999999999999999999999999999999853210                        12344443321     


Q ss_pred             ---hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHH
Q 044538           81 ---EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQS  133 (158)
Q Consensus        81 ---~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~  133 (158)
                         .++.            ...+++.++++.++++.... +++.+|||||||||+||+|++.            +||+..
T Consensus        86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~-~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~  164 (363)
T TIGR01186        86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH-RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLI  164 (363)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence               1111            11355778899999987655 5679999999999999998775            699999


Q ss_pred             HHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          134 IVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       134 ~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +..+.+.+.+.    +.|||+||||+++
T Consensus       165 r~~l~~~l~~l~~~~~~Tii~vTHd~~e  192 (363)
T TIGR01186       165 RDSMQDELKKLQATLQKTIVFITHDLDE  192 (363)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            99998887643    5799999999864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.96  E-value=1.1e-28  Score=186.36  Aligned_cols=137  Identities=25%  Similarity=0.348  Sum_probs=101.9

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeec
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGR   75 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~   75 (158)
                      +.++ ++.|+.  ..+|+++||+|++|++++|+||||||||||+++|++....                     +..+++
T Consensus         3 ~~~l-~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (236)
T cd03219           3 VRGL-TKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR   79 (236)
T ss_pred             eeee-EEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence            3444 888864  3589999999999999999999999999999999864210                     011333


Q ss_pred             cccch--------hhHh----------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538           76 HSRHL--------EDLL----------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS  125 (158)
Q Consensus        76 ~~~~~--------~~~~----------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~  125 (158)
                      .++..        .+.+                      ...+.+.++++.+++..... +++.+||||||||++||+++
T Consensus        80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al  158 (236)
T cd03219          80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLAD-RPAGELSYGQQRRLEIARAL  158 (236)
T ss_pred             EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhh-CChhhCCHHHHHHHHHHHHH
Confidence            33221        0100                      01234667889999976544 56799999999999999887


Q ss_pred             hh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          126 MY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       126 l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      +.            +||+.++..+.+.++++   +.|||++|||+++
T Consensus       159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~  205 (236)
T cd03219         159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV  205 (236)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence            75            69999999999988764   4799999999764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.96  E-value=1.1e-28  Score=183.65  Aligned_cols=137  Identities=24%  Similarity=0.370  Sum_probs=101.5

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------ceeee
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KLRIG   74 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~~~~   74 (158)
                      +.++ ++.|+.  ..+++++||++++|++++|+||||||||||+++|++....                      ...++
T Consensus         3 ~~~l-~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (213)
T cd03262           3 IKNL-HKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG   79 (213)
T ss_pred             EEEE-EEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence            3444 888865  3589999999999999999999999999999999964211                      01123


Q ss_pred             ccccch--------hhHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538           75 RHSRHL--------EDLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        75 ~~~~~~--------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                      +.++..        .+..             ...+++.++++.+++....+ +++.+|||||+||++||++++.      
T Consensus        80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll  158 (213)
T cd03262          80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-AYPAQLSGGQQQRVAIARALAMNPKVML  158 (213)
T ss_pred             EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-hCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence            322211        0111             01234567888999976544 5678999999999999988775      


Q ss_pred             ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                            +||+.++..+.+.++++   +.|||++|||+++
T Consensus       159 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~  197 (213)
T cd03262         159 FDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF  197 (213)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence                  69999999999888765   4699999999754

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.96  E-value=1e-28  Score=192.97  Aligned_cols=126  Identities=21%  Similarity=0.305  Sum_probs=96.8

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeeccccch--------hhH
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRHSRHL--------EDL   83 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~~~~~--------~~~   83 (158)
                      .+|+++||+|++|++++|+||||||||||+++|++....                   +..+++.++..        .+.
T Consensus         7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   86 (302)
T TIGR01188         7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN   86 (302)
T ss_pred             eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence            589999999999999999999999999999999964211                   01234433321        011


Q ss_pred             hh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHH
Q 044538           84 LT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAV  139 (158)
Q Consensus        84 ~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~  139 (158)
                      +.            ..+++.++++.+++..... +++.+||||||||++||++++.            +||+.++..+++
T Consensus        87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~  165 (302)
T TIGR01188        87 LEMMGRLYGLPKDEAEERAEELLELFELGEAAD-RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD  165 (302)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence            10            1235677899999976544 5779999999999999998775            799999999999


Q ss_pred             HHhhc---CCeEEEEeecCCC
Q 044538          140 TLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       140 ~l~~~---~~tvi~vtHd~~~  157 (158)
                      .++++   +.|||++|||+++
T Consensus       166 ~l~~~~~~g~tvi~~sH~~~~  186 (302)
T TIGR01188       166 YIRALKEEGVTILLTTHYMEE  186 (302)
T ss_pred             HHHHHHhCCCEEEEECCCHHH
Confidence            88765   4799999999864

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.96  E-value=1.1e-28  Score=206.42  Aligned_cols=143  Identities=23%  Similarity=0.415  Sum_probs=109.5

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch--
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL--   80 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~--   80 (158)
                      ++++.+.++ ++.|++.  .+|+++||+|.+|++++|+||||||||||+++|++....         ...+++.++..  
T Consensus       320 ~~~l~~~~l-~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~  396 (552)
T TIGR03719       320 DKVIEAENL-SKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDA  396 (552)
T ss_pred             CeEEEEeeE-EEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccc
Confidence            457777666 8888653  589999999999999999999999999999999975321         12355554431  


Q ss_pred             -hhHhhH----------------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538           81 -EDLLTM----------------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT  131 (158)
Q Consensus        81 -~~~~~~----------------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~  131 (158)
                       .+..+.                .....++++.+++.....++++.+|||||||||+||++++.            +||+
T Consensus       397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~  476 (552)
T TIGR03719       397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV  476 (552)
T ss_pred             cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence             110010                12345688999996433345779999999999999988765            7999


Q ss_pred             HHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          132 QSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       132 ~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      .+...+.+.+++++.|||+||||+++
T Consensus       477 ~~~~~l~~~l~~~~~~viivsHd~~~  502 (552)
T TIGR03719       477 ETLRALEEALLEFAGCAVVISHDRWF  502 (552)
T ss_pred             HHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            99999999999987899999999864

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.96  E-value=1.6e-28  Score=186.09  Aligned_cols=140  Identities=25%  Similarity=0.365  Sum_probs=104.8

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------cee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~   72 (158)
                      ++.+.++ ++.|++  .++++++||++++|++++|+||||||||||+++|++....                     ...
T Consensus         2 ~i~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   78 (242)
T TIGR03411         2 ILYLEGL-SVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG   78 (242)
T ss_pred             eEEEEee-EEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence            4555565 888865  3589999999999999999999999999999999964210                     011


Q ss_pred             eeccccch--------hhHh--------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 044538           73 IGRHSRHL--------EDLL--------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV  124 (158)
Q Consensus        73 ~~~~~~~~--------~~~~--------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~  124 (158)
                      +++.++..        .+.+                    ...+++.++++.+++.+..+ +++.+|||||+||++||++
T Consensus        79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Ge~qrv~lara  157 (242)
T TIGR03411        79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD-RLAGLLSHGQKQWLEIGML  157 (242)
T ss_pred             eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHH
Confidence            33322210        1100                    01235677889999976544 5678999999999999998


Q ss_pred             Hhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          125 SMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       125 ~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      ++.            +||+.++..+.+.++++.  .|||++|||+++
T Consensus       158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~  204 (242)
T TIGR03411       158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEF  204 (242)
T ss_pred             HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            775            699999999999988753  699999999764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.96  E-value=1.3e-28  Score=187.51  Aligned_cols=140  Identities=22%  Similarity=0.372  Sum_probs=103.8

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------   69 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------   69 (158)
                      |+.+.++ ++.|++.  .+++|+||+|++|++++|+||||||||||+++|++....                        
T Consensus         3 ~l~~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (250)
T PRK11264          3 AIEVKNL-VKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL   79 (250)
T ss_pred             cEEEece-EEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence            5666666 8888643  589999999999999999999999999999999864210                        


Q ss_pred             ----ceeeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 044538           70 ----KLRIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV  124 (158)
Q Consensus        70 ----~~~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~  124 (158)
                          +..+++.++..        .+.+.             ..+.+.++++.+++....+ +++.+||||||||++||++
T Consensus        80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~Gq~qrv~la~a  158 (250)
T PRK11264         80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKET-SYPRRLSGGQQQRVAIARA  158 (250)
T ss_pred             HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-CChhhCChHHHHHHHHHHH
Confidence                01133322211        11110             1234567888999976544 5679999999999999998


Q ss_pred             Hhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          125 SMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       125 ~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ++.            +||+.++..+.+.++++   +.|||++|||.++
T Consensus       159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~  206 (250)
T PRK11264        159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF  206 (250)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            775            69999999999888654   5799999999753

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.3e-28  Score=189.97  Aligned_cols=143  Identities=20%  Similarity=0.233  Sum_probs=103.5

Q ss_pred             hhhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538           14 MLQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------   69 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------   69 (158)
                      .+.+.++ +++|+...   ..+|+++||+|++|++++|+||||||||||+++|++....                     
T Consensus         6 ~l~i~nl-~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   84 (289)
T PRK13645          6 DIILDNV-SYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE   84 (289)
T ss_pred             eEEEEEE-EEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence            4566666 88887532   2489999999999999999999999999999999863210                     


Q ss_pred             ----ceeeeccccch----hh-----Hhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 044538           70 ----KLRIGRHSRHL----ED-----LLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV  124 (158)
Q Consensus        70 ----~~~~~~~~~~~----~~-----~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~  124 (158)
                          +..+++.++..    ..     .+.            ..+.+.++++.++++....++++.+||||||||++||++
T Consensus        85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara  164 (289)
T PRK13645         85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI  164 (289)
T ss_pred             HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence                01234433321    00     000            013355678889995322345779999999999999998


Q ss_pred             Hhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          125 SMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       125 ~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ++.            +||+.++..+.+.++++    +.|||++|||+++
T Consensus       165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~  213 (289)
T PRK13645        165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ  213 (289)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            875            69999999998887654    5799999999753

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.96  E-value=1.3e-28  Score=192.34  Aligned_cols=139  Identities=22%  Similarity=0.342  Sum_probs=105.3

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeec
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGR   75 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~   75 (158)
                      +.+.++ +++|++  ..+|+|+||++++||+++|+||||||||||+++|++....                   +..+++
T Consensus         3 l~~~~l-~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~   79 (301)
T TIGR03522         3 IRVSSL-TKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY   79 (301)
T ss_pred             EEEEEE-EEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence            344455 888864  3589999999999999999999999999999999964211                   012344


Q ss_pred             cccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538           76 HSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------  127 (158)
Q Consensus        76 ~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------  127 (158)
                      .++..        .+.+.            ..+++.++++.+++.+..+ +++..||||||||++||++++.        
T Consensus        80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lliLD  158 (301)
T TIGR03522        80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-KKIGQLSKGYRQRVGLAQALIHDPKVLILD  158 (301)
T ss_pred             ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            33321        11110            1245677899999987654 5679999999999999988775        


Q ss_pred             ----CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ----HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                          +||+.++..+++.++++  +.|||++||++++
T Consensus       159 EPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~  194 (301)
T TIGR03522       159 EPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQE  194 (301)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence                69999999999998876  4799999999864

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=1.9e-28  Score=181.95  Aligned_cols=140  Identities=23%  Similarity=0.290  Sum_probs=104.0

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce--------------eeecc
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL--------------RIGRH   76 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~--------------~~~~~   76 (158)
                      |+.+.++ ++.|++.  .+++++||+|++||+++|+||||||||||+++|++....   .+              .+++.
T Consensus         2 ~l~~~~l-~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   78 (207)
T PRK13539          2 MLEGEDL-ACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYL   78 (207)
T ss_pred             EEEEEeE-EEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEe
Confidence            3455555 8888653  589999999999999999999999999999999964321   00              12222


Q ss_pred             ccc--------hhhHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538           77 SRH--------LEDLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------H  128 (158)
Q Consensus        77 ~~~--------~~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~  128 (158)
                      ++.        ..+.+.        ..+.+.++++.+++.... ++++.+|||||+||++||++++.            +
T Consensus        79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  157 (207)
T PRK13539         79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA  157 (207)
T ss_pred             cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            211        011110        123467789999997643 46778999999999999988775            6


Q ss_pred             CCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ||+.+...+.+.++++   +.|+|++|||.++
T Consensus       158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  189 (207)
T PRK13539        158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLG  189 (207)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            9999999999888765   5799999999875

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=1.9e-28  Score=205.21  Aligned_cols=142  Identities=22%  Similarity=0.373  Sum_probs=108.4

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch--
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL--   80 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~--   80 (158)
                      .+|+++.++ ++.|++. .++|+|+||+|++|++++|+||||||||||+++|++....         ...+++.+|..  
T Consensus         4 ~~~l~i~~l-~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~   81 (556)
T PRK11819          4 QYIYTMNRV-SKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQL   81 (556)
T ss_pred             cEEEEEeeE-EEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC
Confidence            457777776 9999722 3589999999999999999999999999999999975321         12345444321  


Q ss_pred             ------hhHhh------------------------------------------------HHHHHHHHHHHcCCCCCCCCC
Q 044538           81 ------EDLLT------------------------------------------------MEEAVHAKLRKFGLPGHNHLT  106 (158)
Q Consensus        81 ------~~~~~------------------------------------------------~~~~~~~~l~~~~l~~~~~~~  106 (158)
                            .+.+.                                                ..+++.++++.+|++. . ++
T Consensus        82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~  159 (556)
T PRK11819         82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-W-DA  159 (556)
T ss_pred             CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-c-cC
Confidence                  00000                                                0123456778888853 3 46


Q ss_pred             CCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          107 PIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       107 ~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      ++.+|||||||||+||++++.            +||+.+..++.+.++++..|||+||||+++
T Consensus       160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~  222 (556)
T PRK11819        160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYF  222 (556)
T ss_pred             chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            789999999999999988775            799999999999999988899999999864

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.96  E-value=1.3e-28  Score=201.69  Aligned_cols=144  Identities=22%  Similarity=0.316  Sum_probs=108.2

Q ss_pred             hhhhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------
Q 044538           13 PMLQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------   70 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------   70 (158)
                      +++++.|+ ++.|....  ..+++||||++.+||++||+|+|||||||+.+.+.+.....                    
T Consensus         4 ~lL~V~nL-~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~   82 (539)
T COG1123           4 PLLEVENL-TVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE   82 (539)
T ss_pred             ceEEEece-EEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence            36666666 87776432  35899999999999999999999999999999998532111                    


Q ss_pred             --------eeeeccccchhhH----h-------------------hHHHHHHHHHHHcCCCCCCCC-CCCCCCChHHHHH
Q 044538           71 --------LRIGRHSRHLEDL----L-------------------TMEEAVHAKLRKFGLPGHNHL-TPIANLSGGQKVR  118 (158)
Q Consensus        71 --------~~~~~~~~~~~~~----~-------------------~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGqkqr  118 (158)
                              ..+++.+|.....    +                   ...+++.++++.+++++.... +++++||||||||
T Consensus        83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR  162 (539)
T COG1123          83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR  162 (539)
T ss_pred             HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence                    1234444432111    1                   123567789999999876553 4679999999999


Q ss_pred             HHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          119 VMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       119 v~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      |.||+|++.            .||+..+.++++.|+++    +.++|+||||++.
T Consensus       163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V  217 (539)
T COG1123         163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV  217 (539)
T ss_pred             HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH
Confidence            999998775            59999999999888654    5799999999864

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.96  E-value=1.6e-28  Score=187.35  Aligned_cols=142  Identities=23%  Similarity=0.253  Sum_probs=104.1

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------c------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------K------------   70 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------~------------   70 (158)
                      +++.+.++ ++.|+..  .+++|+||+|++|++++|+||||||||||+++|++....          .            
T Consensus         2 ~~l~~~~l-~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (253)
T TIGR02323         2 PLLQVSGL-SKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA   78 (253)
T ss_pred             ceEEEeee-EEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHH
Confidence            46666666 8888653  479999999999999999999999999999999864210          0            


Q ss_pred             -------eeeeccccchh----------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHH
Q 044538           71 -------LRIGRHSRHLE----------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVM  120 (158)
Q Consensus        71 -------~~~~~~~~~~~----------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~  120 (158)
                             ..+++.++...          +..             ...+.+.++++.+++.....++++.+||||||||++
T Consensus        79 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~  158 (253)
T TIGR02323        79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQ  158 (253)
T ss_pred             HHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHH
Confidence                   01333332210          010             012455678899999632233567899999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.+...+.+.+++.    +.|+|+||||.++
T Consensus       159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~  211 (253)
T TIGR02323       159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV  211 (253)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            9998775            79999999998887653    5799999999754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.2e-28  Score=204.33  Aligned_cols=141  Identities=20%  Similarity=0.243  Sum_probs=107.3

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----c-----------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----K-----------------   70 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----~-----------------   70 (158)
                      +|+++.++ +++|++  ..+|+|+||+|++|++++|+||||||||||+++|++....     .                 
T Consensus         4 ~~l~~~nl-~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~   80 (506)
T PRK13549          4 YLLEMKNI-TKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE   80 (506)
T ss_pred             ceEEEeee-EEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence            56777776 899864  3589999999999999999999999999999999975331     0                 


Q ss_pred             -eeeeccccch--------hhHh---------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           71 -LRIGRHSRHL--------EDLL---------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        71 -~~~~~~~~~~--------~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                       ..+++.+|..        .+.+               ...+++.++++.+++..... +++.+||||||||++||++++
T Consensus        81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqrv~la~al~  159 (506)
T PRK13549         81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA-TPVGNLGLGQQQLVEIAKALN  159 (506)
T ss_pred             HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcc-cchhhCCHHHHHHHHHHHHHh
Confidence             1133333221        0000               01245678899999976544 677999999999999999877


Q ss_pred             h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      .            +||+.++..+.+.+.++   +.|||+||||+++
T Consensus       160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~  205 (506)
T PRK13549        160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNE  205 (506)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence            4            79999999999888665   4699999999764

>PLN03073 ABC transporter F family; Provisional

Probab=99.96  E-value=1.4e-28  Score=210.43  Aligned_cols=143  Identities=39%  Similarity=0.679  Sum_probs=110.5

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccchhh-
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHLED-   82 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~~~-   82 (158)
                      +++.+.++ ++.|++.. .+|+++||+|.+|++++|+||||||||||+++|++...+         +..+++.+|.... 
T Consensus       507 ~~L~~~~l-s~~y~~~~-~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~  584 (718)
T PLN03073        507 PIISFSDA-SFGYPGGP-LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDG  584 (718)
T ss_pred             ceEEEEee-EEEeCCCC-eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccccc
Confidence            56776666 88886432 589999999999999999999999999999999975321         2235555443210 


Q ss_pred             -------Hh--------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHH
Q 044538           83 -------LL--------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIV  135 (158)
Q Consensus        83 -------~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~  135 (158)
                             ..        ...+.+..+++.+++......+++.+||||||||++||++++.            +||+.+..
T Consensus       585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~  664 (718)
T PLN03073        585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE  664 (718)
T ss_pred             CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence                   00        0134567889999997433346789999999999999988774            79999999


Q ss_pred             HHHHHHhhcCCeEEEEeecCCC
Q 044538          136 AVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       136 ~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      .+.+.+.++..|||+||||+++
T Consensus       665 ~l~~~L~~~~gtvIivSHd~~~  686 (718)
T PLN03073        665 ALIQGLVLFQGGVLMVSHDEHL  686 (718)
T ss_pred             HHHHHHHHcCCEEEEEECCHHH
Confidence            9999998877799999999764

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.96  E-value=2.1e-28  Score=185.63  Aligned_cols=138  Identities=21%  Similarity=0.296  Sum_probs=101.7

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeecc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGRH   76 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~~   76 (158)
                      +.++ ++.|++. ..+|+++||+|++|++++|+||||||||||+++|++....                    ...+++.
T Consensus         3 ~~~l-~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (242)
T cd03295           3 FENV-TKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV   80 (242)
T ss_pred             EEEE-EEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence            3444 8888752 3589999999999999999999999999999999964211                    0113333


Q ss_pred             ccch--------hhHh------------hHHHHHHHHHHHcCCCC--CCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538           77 SRHL--------EDLL------------TMEEAVHAKLRKFGLPG--HNHLTPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        77 ~~~~--------~~~~------------~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                      ++..        .+.+            ...+.+.++++.+++..  .. ++++.+|||||+||++||++++.       
T Consensus        81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llll  159 (242)
T cd03295          81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA-DRYPHELSGGQQQRVGVARALAADPPLLLM  159 (242)
T ss_pred             ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHH-hcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            3221        0111            01235677899999975  33 35678999999999999998775       


Q ss_pred             -----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                           +||+.+...+.+.+++.    +.|||++|||.++
T Consensus       160 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~  198 (242)
T cd03295         160 DEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE  198 (242)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence                 69999999999888764    5799999999753

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.96  E-value=1.4e-28  Score=178.41  Aligned_cols=127  Identities=23%  Similarity=0.277  Sum_probs=92.2

Q ss_pred             CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeeeccccchhh--HhhHHHHHHHHHHHcCCCCCCCC
Q 044538           28 LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLED--LLTMEEAVHAKLRKFGLPGHNHL  105 (158)
Q Consensus        28 ~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~  105 (158)
                      ..+++|+|+||++++|++++|+||||||||||++++.+. .....+.........  .....+  .++++.+++.....+
T Consensus         6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~-~G~v~~~~~~~~~~~~~~~~~~q--~~~l~~~~L~~~~~~   82 (176)
T cd03238           6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA-SGKARLISFLPKFSRNKLIFIDQ--LQFLIDVGLGYLTLG   82 (176)
T ss_pred             eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhc-CCcEEECCcccccccccEEEEhH--HHHHHHcCCCccccC
Confidence            345689999999999999999999999999999998642 112222111000000  000111  468899999754234


Q ss_pred             CCCCCCChHHHHHHHHHHHHhhC--------------CCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          106 TPIANLSGGQKVRVMFTLVSMYH--------------LDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       106 ~~~~~LSgGqkqrv~ia~~~l~~--------------lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      +++.+||||||||++||++++.+              ||+.+...+.+.++++   +.|||++|||+++
T Consensus        83 ~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~  151 (176)
T cd03238          83 QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV  151 (176)
T ss_pred             CCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            56799999999999999988764              8899999888888764   5799999999753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.8e-28  Score=188.41  Aligned_cols=141  Identities=23%  Similarity=0.342  Sum_probs=104.1

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      ++.+.++ ++.|+... .+|+++||++++||+++|+||||||||||+++|++....                    ...+
T Consensus         3 ~l~~~~l-~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   80 (277)
T PRK13652          3 LIETRDL-CYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV   80 (277)
T ss_pred             eEEEEEE-EEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence            3555555 88886432 489999999999999999999999999999999964211                    0013


Q ss_pred             eccccch---------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           74 GRHSRHL---------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        74 ~~~~~~~---------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      ++.++..         .+.+.            ..+.+.++++.+++.+..+ +++.+||||||||++||++++.     
T Consensus        81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrl~laraL~~~p~ll  159 (277)
T PRK13652         81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-RVPHHLSGGEKKRVAIAGVIAMEPQVL  159 (277)
T ss_pred             EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            3333221         01110            1134677889999976554 5678999999999999998775     


Q ss_pred             -------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                             +||+.+...+.+.+++.    +.|||++|||+++
T Consensus       160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~  200 (277)
T PRK13652        160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL  200 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                   69999999998888653    5799999999764

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.8e-28  Score=187.15  Aligned_cols=141  Identities=22%  Similarity=0.359  Sum_probs=104.3

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~   71 (158)
                      +++.+.++ ++.|++  .++|+++||++.+|++++|+||||||||||+++|++....                     +.
T Consensus         4 ~~l~~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (255)
T PRK11300          4 PLLSVSGL-MMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM   80 (255)
T ss_pred             ceEEEeeE-EEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence            46777676 888864  3589999999999999999999999999999999964210                     11


Q ss_pred             eeeccccch--------hhHhh---------------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHH
Q 044538           72 RIGRHSRHL--------EDLLT---------------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQK  116 (158)
Q Consensus        72 ~~~~~~~~~--------~~~~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  116 (158)
                      .+++.++..        .+.+.                           ..+.+.++++.+++..... +++.+||||||
T Consensus        81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~  159 (255)
T PRK11300         81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHAN-RQAGNLAYGQQ  159 (255)
T ss_pred             CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhh-CChhhCCHHHH
Confidence            123222210        11000                           0124566788899976544 56799999999


Q ss_pred             HHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          117 VRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       117 qrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ||++||++++.            +||+.++..+.+.|.++    +.|||++|||+++
T Consensus       160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~  216 (255)
T PRK11300        160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL  216 (255)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence            99999998775            69999999998888653    5799999999754

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=1.6e-28  Score=205.72  Aligned_cols=143  Identities=23%  Similarity=0.407  Sum_probs=109.5

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch--
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL--   80 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~--   80 (158)
                      ++++.+.++ ++.|++.  .+|+|+||+|.+|++++|+||||||||||+++|++....         ...+++.++..  
T Consensus       322 ~~~l~~~~l-~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~  398 (556)
T PRK11819        322 DKVIEAENL-SKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDA  398 (556)
T ss_pred             CeEEEEEeE-EEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhh
Confidence            457777666 8888653  589999999999999999999999999999999975321         12355555432  


Q ss_pred             -hhHhhH----------------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538           81 -EDLLTM----------------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT  131 (158)
Q Consensus        81 -~~~~~~----------------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~  131 (158)
                       ....+.                ......+++.+++.....++++.+||||||||++||++++.            +||+
T Consensus       399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~  478 (556)
T PRK11819        399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV  478 (556)
T ss_pred             cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence             110111                12345688999996433346779999999999999988764            7999


Q ss_pred             HHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          132 QSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       132 ~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      .++..+.+.|.++..|||+||||+++
T Consensus       479 ~~~~~l~~~l~~~~~tvi~vtHd~~~  504 (556)
T PRK11819        479 ETLRALEEALLEFPGCAVVISHDRWF  504 (556)
T ss_pred             HHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            99999999999987799999999764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.8e-28  Score=207.62  Aligned_cols=148  Identities=19%  Similarity=0.243  Sum_probs=108.6

Q ss_pred             CCCchhhhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c-------------
Q 044538            9 ESTSPMLQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K-------------   70 (158)
Q Consensus         9 ~~~~~~l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~-------------   70 (158)
                      -...+|+.+.++ ++.|+..  ..++++|+||+|++||+++|+||||||||||+++|++....   .             
T Consensus         7 ~~~~~~l~v~~l-~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~   85 (623)
T PRK10261          7 LDARDVLAVENL-NIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR   85 (623)
T ss_pred             CCCCceEEEece-EEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccc
Confidence            344568887777 9999632  23589999999999999999999999999999999864210   0             


Q ss_pred             ------------------eeeeccccch----hhHhh-------------------HHHHHHHHHHHcCCCCC--CCCCC
Q 044538           71 ------------------LRIGRHSRHL----EDLLT-------------------MEEAVHAKLRKFGLPGH--NHLTP  107 (158)
Q Consensus        71 ------------------~~~~~~~~~~----~~~~~-------------------~~~~~~~~l~~~~l~~~--~~~~~  107 (158)
                                        ..+++.+|..    .+.++                   ..+++.++++.+|+++.  ..+++
T Consensus        86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~  165 (623)
T PRK10261         86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRY  165 (623)
T ss_pred             cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCC
Confidence                              1244444421    11000                   12456678999999641  22356


Q ss_pred             CCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          108 IANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       108 ~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +.+|||||||||+||+|++.            +||+.++..+++.++++    +.|||+||||+++
T Consensus       166 ~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~  231 (623)
T PRK10261        166 PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV  231 (623)
T ss_pred             CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence            79999999999999998875            69999988888877653    5799999999864

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.96  E-value=2e-28  Score=187.75  Aligned_cols=141  Identities=25%  Similarity=0.359  Sum_probs=105.7

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------ce---------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------KL---------------   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------~~---------------   71 (158)
                      +++.+.++ ++.|+.  ..+++++||++.+||+++|+||||||||||+++|++....      .+               
T Consensus         3 ~~l~~~nl-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~   79 (262)
T PRK09984          3 TIIRVEKL-AKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR   79 (262)
T ss_pred             cEEEEeeE-EEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccch
Confidence            46777676 888864  3589999999999999999999999999999999975421      00               


Q ss_pred             -------eeeccccch--------hhHhh--------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHH
Q 044538           72 -------RIGRHSRHL--------EDLLT--------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQK  116 (158)
Q Consensus        72 -------~~~~~~~~~--------~~~~~--------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  116 (158)
                             .+++.++..        .+.+.                    ..+++.++++.+++....+ +++.+||||||
T Consensus        80 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~  158 (262)
T PRK09984         80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-QRVSTLSGGQQ  158 (262)
T ss_pred             hHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-CCccccCHHHH
Confidence                   123322210        00000                    1235677889999975444 56789999999


Q ss_pred             HHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          117 VRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       117 qrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ||++||++++.            +||+.++..+.+.++++    +.|||++|||+++
T Consensus       159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~  215 (262)
T PRK09984        159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY  215 (262)
T ss_pred             HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            99999988775            69999999999888764    4799999999864

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.4e-29  Score=182.16  Aligned_cols=141  Identities=26%  Similarity=0.392  Sum_probs=102.0

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c--------------------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K--------------------   70 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~--------------------   70 (158)
                      |+.+.++ +++|+..  .+++++|++|++|.+++++||||||||||+.+++...+.   .                    
T Consensus         1 MI~i~nv-~K~y~~~--~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l   77 (252)
T COG4604           1 MITIENV-SKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL   77 (252)
T ss_pred             Ceeehhh-hHhhCCE--EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence            4555666 8888754  589999999999999999999999999999998732110   0                    


Q ss_pred             ------------------eeeeccccchh-hHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           71 ------------------LRIGRHSRHLE-DLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        71 ------------------~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                                        ..+|+++..-. .....+..+.++++.+++.+..+ ++..+||||||||..||+.+..    
T Consensus        78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~d-ryLd~LSGGQrQRAfIAMVlaQdTdy  156 (252)
T COG4604          78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSD-RYLDELSGGQRQRAFIAMVLAQDTDY  156 (252)
T ss_pred             HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHH-HhHHhcccchhhhhhhheeeeccCcE
Confidence                              01222221100 01123466888999999987655 6789999999999999765442    


Q ss_pred             --------CCCHHHHHHHHHHHh----hcCCeEEEEeecCCCC
Q 044538          128 --------HLDTQSIVAVAVTLD----EFAGGVVLVSHDSRLI  158 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~----~~~~tvi~vtHd~~~~  158 (158)
                              +||..-...+++.|+    +++.||++|-||.+|+
T Consensus       157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfA  199 (252)
T COG4604         157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA  199 (252)
T ss_pred             EEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHH
Confidence                    788777666666664    5678999999999874

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.96  E-value=1.1e-28  Score=203.81  Aligned_cols=140  Identities=21%  Similarity=0.202  Sum_probs=105.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce-----------------ee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL-----------------RI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~-----------------~~   73 (158)
                      |+.+.++ +++|+..  .+|+++||+|.+|++++|+||||||||||+++|++....   .+                 .+
T Consensus         3 ~l~~~~l-~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i   79 (490)
T PRK10938          3 SLQISQG-TFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV   79 (490)
T ss_pred             eEEEEeE-EEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence            4566666 8888653  489999999999999999999999999999999964211   00                 12


Q ss_pred             eccccchh-----h-----Hhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538           74 GRHSRHLE-----D-----LLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        74 ~~~~~~~~-----~-----~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                      ++.++...     .     ..+          ..+++.++++.+++.+..+ +++.+|||||||||+||++++.      
T Consensus        80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lll  158 (490)
T PRK10938         80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLD-RRFKYLSTGETRKTLLCQALMSEPDLLI  158 (490)
T ss_pred             ceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            22222110     0     011          1245678899999976544 6779999999999999998775      


Q ss_pred             ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                            +||+.++.++.+.++++   +.|||++|||+++
T Consensus       159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~  197 (490)
T PRK10938        159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE  197 (490)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence                  79999999999998776   4699999999864

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=1.9e-28  Score=185.58  Aligned_cols=139  Identities=26%  Similarity=0.375  Sum_probs=102.9

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------cee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KLR   72 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~~   72 (158)
                      +.+.++ ++.|++  ..+++|+||++++||+++|+||||||||||+++|++....                      +..
T Consensus         2 l~~~~l-~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (240)
T PRK09493          2 IEFKNV-SKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE   78 (240)
T ss_pred             EEEEeE-EEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence            445555 888864  3589999999999999999999999999999999964210                      011


Q ss_pred             eeccccch--------hhHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           73 IGRHSRHL--------EDLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        73 ~~~~~~~~--------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      +++.++..        .+.+             ...+.+.++++.++++...+ +++.+||||||||++||++++.    
T Consensus        79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~la~al~~~p~l  157 (240)
T PRK09493         79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-HYPSELSGGQQQRVAIARALAVKPKL  157 (240)
T ss_pred             eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-cChhhcCHHHHHHHHHHHHHhcCCCE
Confidence            33332210        0110             01234567889999976544 5678999999999999998775    


Q ss_pred             --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                              +||+.++..+.+.++++   +.|+|++|||+++
T Consensus       158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  198 (240)
T PRK09493        158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF  198 (240)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence                    69999999999888654   5799999999764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.96  E-value=2.6e-28  Score=202.57  Aligned_cols=142  Identities=20%  Similarity=0.220  Sum_probs=108.0

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------c
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------K   70 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~   70 (158)
                      .+++.+.++ ++.|++  ..+|+++||+|++|++++|+||||||||||+++|++....                     +
T Consensus         9 ~~~l~~~~l-~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   85 (510)
T PRK15439          9 PPLLCARSI-SKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ   85 (510)
T ss_pred             CceEEEEeE-EEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHh
Confidence            356777666 888875  3589999999999999999999999999999999864211                     0


Q ss_pred             eeeeccccch--------hhHh--------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538           71 LRIGRHSRHL--------EDLL--------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        71 ~~~~~~~~~~--------~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                      ..+++.++..        .+.+        ...+++.++++.+++....+ +++.+|||||||||+||++++.       
T Consensus        86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~aL~~~p~lllL  164 (510)
T PRK15439         86 LGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-SSAGSLEVADRQIVEILRGLMRDSRILIL  164 (510)
T ss_pred             CCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            1234433321        1111        11345678899999986544 5779999999999999998775       


Q ss_pred             -----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 -----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                           +||+.++.++.+.|+++   +.|||++|||+++
T Consensus       165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~  202 (510)
T PRK15439        165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE  202 (510)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence                 69999999999988765   5799999999764

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.96  E-value=2.7e-28  Score=182.97  Aligned_cols=142  Identities=25%  Similarity=0.363  Sum_probs=103.6

Q ss_pred             hhhheeeeEEcCC----C-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----------------
Q 044538           15 LQLIEVISFSYPN----L-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K----------------   70 (158)
Q Consensus        15 l~~~~~~~~~~~~----~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~----------------   70 (158)
                      +.+.++ ++.|+.    . ...+++|+||+|.+||+++|+||||||||||+++|++....   .                
T Consensus         2 l~~~~l-~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~   80 (224)
T TIGR02324         2 LEVEDL-SKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS   80 (224)
T ss_pred             EEEEee-EEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence            445555 888853    1 13589999999999999999999999999999999864210   0                


Q ss_pred             ---------eeeeccccchh--------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHH
Q 044538           71 ---------LRIGRHSRHLE--------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMF  121 (158)
Q Consensus        71 ---------~~~~~~~~~~~--------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i  121 (158)
                               ..+++.++...        +.+            ...+.+.++++.+++.....++++.+||||||||++|
T Consensus        81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l  160 (224)
T TIGR02324        81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI  160 (224)
T ss_pred             HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence                     11333333210        000            0124556788999997543345779999999999999


Q ss_pred             HHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          122 TLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       122 a~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      |++++.            +||+.+...+.+.++++   +.|||++|||.++
T Consensus       161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~  211 (224)
T TIGR02324       161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEV  211 (224)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            998775            69999999999888764   5799999999753

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.5e-28  Score=188.29  Aligned_cols=141  Identities=24%  Similarity=0.308  Sum_probs=105.2

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------ceeeecc
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------KLRIGRH   76 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------~~~~~~~   76 (158)
                      ++.+.++ ++.|+++ .++++|+||+|++|++++|+||||||||||+++|++....                 ...+++.
T Consensus         6 ~l~~~~l-~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v   83 (272)
T PRK15056          6 GIVVNDV-TVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV   83 (272)
T ss_pred             eEEEEeE-EEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence            4556565 8888633 3589999999999999999999999999999999964211                 0124443


Q ss_pred             ccch----------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           77 SRHL----------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        77 ~~~~----------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      ++..          .+..                ...+.+.++++.+++.+... +++.+|||||+||++||++++.   
T Consensus        84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~qrv~laraL~~~p~  162 (272)
T PRK15056         84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-RQIGELSGGQKKRVFLARAIAQQGQ  162 (272)
T ss_pred             ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHhcCCC
Confidence            3221          0100                01234567889999976544 5779999999999999998775   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                               +||+.+...+.+.++++   +.|||++|||+++
T Consensus       163 llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~  204 (272)
T PRK15056        163 VILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS  204 (272)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence                     69999999999988765   4699999999753

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.96  E-value=2.7e-28  Score=177.53  Aligned_cols=135  Identities=30%  Similarity=0.408  Sum_probs=98.2

Q ss_pred             eeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccch---h-hHh-hHHHHHHH
Q 044538           19 EVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHL---E-DLL-TMEEAVHA   92 (158)
Q Consensus        19 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~---~-~~~-~~~~~~~~   92 (158)
                      ++ ++.|+.  ..+|+++||++.+|++++|+||||||||||+++|++..... ..+-......   . ... .....+.+
T Consensus         4 ~l-~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q   80 (180)
T cd03214           4 NL-SVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ   80 (180)
T ss_pred             EE-EEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence            44 788865  35899999999999999999999999999999999864321 1111111110   0 000 00111223


Q ss_pred             HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538           93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR  156 (158)
Q Consensus        93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~  156 (158)
                      +++.+++.+... +++.+|||||+||++||++++.            +||+.+...+.+.+.++    +.|+|++|||++
T Consensus        81 ~l~~~gl~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~  159 (180)
T cd03214          81 ALELLGLAHLAD-RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN  159 (180)
T ss_pred             HHHHcCCHhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            788899976544 5678999999999999988775            69999999998888654    469999999976


Q ss_pred             C
Q 044538          157 L  157 (158)
Q Consensus       157 ~  157 (158)
                      +
T Consensus       160 ~  160 (180)
T cd03214         160 L  160 (180)
T ss_pred             H
Confidence            4

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.96  E-value=5.6e-28  Score=178.97  Aligned_cols=133  Identities=27%  Similarity=0.412  Sum_probs=100.3

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------c--------------eeeeccc
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------K--------------LRIGRHS   77 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------~--------------~~~~~~~   77 (158)
                      ++.|+.  .++++++||++++||+++|+||||||||||+++|++....          .              ..+++.+
T Consensus         5 ~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~   82 (206)
T TIGR03608         5 SKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLF   82 (206)
T ss_pred             EEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEe
Confidence            788864  3589999999999999999999999999999999964211          0              0133322


Q ss_pred             cch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538           78 RHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------  127 (158)
Q Consensus        78 ~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------  127 (158)
                      +..        .+...            ..+++.++++.+++....+ +++.+|||||+||++||++++.          
T Consensus        83 q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qr~~laral~~~p~llllDEP  161 (206)
T TIGR03608        83 QNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-QKIYELSGGEQQRVALARAILKDPPLILADEP  161 (206)
T ss_pred             cchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            211        01110            1245677899999976544 5678999999999999988775          


Q ss_pred             --CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 --HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                        +||+.+...+.+.++++   +.|+|++|||+++
T Consensus       162 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~  196 (206)
T TIGR03608       162 TGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV  196 (206)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence              69999999999988765   4799999999753

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.96  E-value=2.4e-28  Score=183.98  Aligned_cols=136  Identities=21%  Similarity=0.348  Sum_probs=100.8

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeec
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGR   75 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~   75 (158)
                      +.++ ++.|++.  .+|+++||++.+|++++|+||||||||||+++|++....                     +..+++
T Consensus         3 ~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (232)
T cd03218           3 AENL-SKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY   79 (232)
T ss_pred             EEEE-EEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence            3444 8888643  589999999999999999999999999999999864210                     012333


Q ss_pred             cccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538           76 HSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------  127 (158)
Q Consensus        76 ~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------  127 (158)
                      .++..        .+.+.            ..+++.++++.+++..... +++.+||||||||++||++++.        
T Consensus        80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllD  158 (232)
T cd03218          80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRK-SKASSLSGGERRRVEIARALATNPKFLLLD  158 (232)
T ss_pred             ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            33221        01100            1234567888999976544 5678999999999999988775        


Q ss_pred             ----CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          128 ----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       128 ----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                          +||+.++..+.+.+++.   +.|+|++|||++
T Consensus       159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~  194 (232)
T cd03218         159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR  194 (232)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence                69999999988888654   469999999975

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.95  E-value=1.5e-28  Score=182.73  Aligned_cols=136  Identities=25%  Similarity=0.346  Sum_probs=101.3

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeeccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRHS   77 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~~   77 (158)
                      +.++ ++.|++.  ++++++||++++| +++|+||||||||||+++|++....                   ...+++.+
T Consensus         3 ~~~~-~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   78 (211)
T cd03264           3 LENL-TKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP   78 (211)
T ss_pred             EEEE-EEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence            3444 8888653  5899999999999 9999999999999999999964210                   01133333


Q ss_pred             cch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538           78 RHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------  127 (158)
Q Consensus        78 ~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------  127 (158)
                      +..        .+.+.            ..+.+.++++.+++.+..+ +++.+||||||||++||++++.          
T Consensus        79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEP  157 (211)
T cd03264          79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-KKIGSLSGGMRRRVGIAQALVGDPSILIVDEP  157 (211)
T ss_pred             CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            221        11110            1234667889999976544 5678999999999999988775          


Q ss_pred             --CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 --HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                        +||+.++..+.+.++++  +.|+|++|||+++
T Consensus       158 t~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~  191 (211)
T cd03264         158 TAGLDPEERIRFRNLLSELGEDRIVILSTHIVED  191 (211)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence              69999999999999776  3799999999764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.95  E-value=4.1e-28  Score=174.61  Aligned_cols=126  Identities=27%  Similarity=0.250  Sum_probs=94.4

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccchh-hHhhH
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHLE-DLLTM   86 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~~-~~~~~   86 (158)
                      +.++ +++|+.. +++++++||++.+|++++|+||||||||||+++|++....         ...+++.++... ...+.
T Consensus         3 ~~~~-~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv   80 (166)
T cd03223           3 LENL-SLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTL   80 (166)
T ss_pred             EEEE-EEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccH
Confidence            3444 8888643 3589999999999999999999999999999999976432         113445444321 11122


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeec
Q 044538           87 EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHD  154 (158)
Q Consensus        87 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd  154 (158)
                      .+.+    ...         ++.+||||||||++||++++.            +||+.+...+.+.+++++.|+|++|||
T Consensus        81 ~~nl----~~~---------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~  147 (166)
T cd03223          81 REQL----IYP---------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHR  147 (166)
T ss_pred             HHHh----hcc---------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCC
Confidence            2222    110         347899999999999998775            699999999999999888899999999


Q ss_pred             CCC
Q 044538          155 SRL  157 (158)
Q Consensus       155 ~~~  157 (158)
                      .++
T Consensus       148 ~~~  150 (166)
T cd03223         148 PSL  150 (166)
T ss_pred             hhH
Confidence            753

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.95  E-value=6.6e-28  Score=178.33  Aligned_cols=136  Identities=25%  Similarity=0.362  Sum_probs=101.8

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----------------eeeeccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K----------------LRIGRHS   77 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~----------------~~~~~~~   77 (158)
                      +.++ ++.|+..  .+++++||+|++|++++|+|+||||||||+++|++....   .                ..+++.+
T Consensus         3 i~~l-~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (201)
T cd03231           3 ADEL-TCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG   79 (201)
T ss_pred             EEEE-EEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence            3444 8888653  579999999999999999999999999999999964311   0                0123322


Q ss_pred             cch--------hhHh------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538           78 RHL--------EDLL------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT  131 (158)
Q Consensus        78 ~~~--------~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~  131 (158)
                      +..        .+..      ...+++.++++.+++.+..+ +++.+||||||||++||++++.            +||+
T Consensus        80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~  158 (201)
T cd03231          80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK  158 (201)
T ss_pred             cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence            211        1111      01345677889999976544 5678999999999999998774            6999


Q ss_pred             HHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          132 QSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       132 ~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      .+...+.+.+.++   +.|+|++|||..
T Consensus       159 ~~~~~l~~~l~~~~~~g~tiii~sH~~~  186 (201)
T cd03231         159 AGVARFAEAMAGHCARGGMVVLTTHQDL  186 (201)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence            9999999988765   579999999865

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.7e-28  Score=184.98  Aligned_cols=140  Identities=24%  Similarity=0.307  Sum_probs=102.4

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~   74 (158)
                      +.+.++ +++|+.  ..+++|+||+|.+|++++|+||||||||||+++|++....                    +..++
T Consensus         4 l~~~~l-~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~   80 (241)
T PRK14250          4 IEFKEV-SYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG   80 (241)
T ss_pred             EEEEeE-EEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence            445555 888864  3589999999999999999999999999999999964211                    01133


Q ss_pred             ccccch-------hhHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538           75 RHSRHL-------EDLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------  127 (158)
                      +.++..       .+.+.        ..+++.++++.+++......+++.+||||||||++||++++.            
T Consensus        81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~  160 (241)
T PRK14250         81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS  160 (241)
T ss_pred             EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            333221       01110        123566788999996322335678999999999999988775            


Q ss_pred             CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +||+.++..+.+.+++.    +.|||++|||+++
T Consensus       161 ~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~  194 (241)
T PRK14250        161 ALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ  194 (241)
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence            69999999988888653    5799999999864

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.9e-28  Score=186.21  Aligned_cols=140  Identities=24%  Similarity=0.352  Sum_probs=103.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      |+.+.++ +++|+.  ..+|+++||++++|++++|+||||||||||+++|++....                    ...+
T Consensus         2 ~l~~~~l-~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   78 (255)
T PRK11231          2 TLRTENL-TVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL   78 (255)
T ss_pred             EEEEEeE-EEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence            3455555 888864  3589999999999999999999999999999999964210                    0113


Q ss_pred             eccccch--------hhHhh----------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHL--------EDLLT----------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~--------~~~~~----------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ++.++..        .+...                ..+.+.++++.+++....+ +++.+|||||+||++||++++.  
T Consensus        79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p  157 (255)
T PRK11231         79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-RRLTDLSGGQRQRAFLAMVLAQDT  157 (255)
T ss_pred             EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-CCcccCCHHHHHHHHHHHHHhcCC
Confidence            3332210        01110                1234667888899976544 5678999999999999998775  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                                +||+.++..+.+.++++   +.|||++|||+++
T Consensus       158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~  200 (255)
T PRK11231        158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQ  200 (255)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence                      69999999999888664   4799999999764

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.95  E-value=8.8e-28  Score=177.51  Aligned_cols=140  Identities=24%  Similarity=0.320  Sum_probs=103.7

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeec
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGR   75 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~   75 (158)
                      +.+.++ +++|+.  .++++++||++++||+++|+||||||||||+++|++....                   ...+++
T Consensus         2 l~~~~l-~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~   78 (200)
T PRK13540          2 LDVIEL-DFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF   78 (200)
T ss_pred             EEEEEE-EEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence            455555 888865  3589999999999999999999999999999999964311                   001232


Q ss_pred             cccch--------hhHhh-------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538           76 HSRHL--------EDLLT-------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------H  128 (158)
Q Consensus        76 ~~~~~--------~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~  128 (158)
                      .++..        .+...       ....+.++++.+++.... ++++.+|||||+||++||++++.            +
T Consensus        79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~  157 (200)
T PRK13540         79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-DYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA  157 (200)
T ss_pred             eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-hCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            22210        11111       123467788999987544 36778999999999999988775            6


Q ss_pred             CCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538          129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI  158 (158)
Q Consensus       129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~  158 (158)
                      ||+.++..+.+.+++.   +.|+|++|||.+++
T Consensus       158 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~  190 (200)
T PRK13540        158 LDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL  190 (200)
T ss_pred             cCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhc
Confidence            9999999999988764   57999999998753

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.95  E-value=6.5e-28  Score=177.89  Aligned_cols=135  Identities=24%  Similarity=0.344  Sum_probs=100.8

Q ss_pred             heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeecccc
Q 044538           18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRHSR   78 (158)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~~~   78 (158)
                      .++ ++.|+.  ..+++++||++.+|++++|+||||||||||+++|++....                   ...+++.++
T Consensus         4 ~~l-~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (198)
T TIGR01189         4 RNL-ACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH   80 (198)
T ss_pred             EEE-EEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence            344 778864  3589999999999999999999999999999999964211                   011233322


Q ss_pred             ch--------hhHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538           79 HL--------EDLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLD  130 (158)
Q Consensus        79 ~~--------~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD  130 (158)
                      ..        .+...        ..+.+.++++.+++.+... +++.+||||||||++||++++.            +||
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD  159 (198)
T TIGR01189        81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD  159 (198)
T ss_pred             CcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence            10        11110        0134677889999976544 5679999999999999988775            699


Q ss_pred             HHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          131 TQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       131 ~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      +.+...+.+.+.++   +.|+|++|||..
T Consensus       160 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~  188 (198)
T TIGR01189       160 KAGVALLAGLLRAHLARGGIVLLTTHQDL  188 (198)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence            99999999988765   579999999865

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=5e-28  Score=187.04  Aligned_cols=142  Identities=25%  Similarity=0.333  Sum_probs=105.6

Q ss_pred             hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538           14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~   72 (158)
                      ++.+.++ ++.|+.. ...+++++||++.+||+++|+|+||||||||+++|++....                    ...
T Consensus         4 ~l~~~~l-~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   82 (277)
T PRK13642          4 ILEVENL-VFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK   82 (277)
T ss_pred             eEEEEEE-EEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence            5666666 9999743 23589999999999999999999999999999999864210                    112


Q ss_pred             eeccccchh---------hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           73 IGRHSRHLE---------DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        73 ~~~~~~~~~---------~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      +++.++...         +.+.            ..+++.++++.+++..... +++.+|||||+||++||++++.    
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~lAraL~~~p~l  161 (277)
T PRK13642         83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-REPARLSGGQKQRVAVAGIIALRPEI  161 (277)
T ss_pred             eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            344333210         1010            1234567888899976544 5679999999999999998775    


Q ss_pred             --------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                              +||+.+...+.+.++++    +.|||++|||+++
T Consensus       162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~  203 (277)
T PRK13642        162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE  203 (277)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                    69999999998888654    5799999999764

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.5e-28  Score=188.04  Aligned_cols=144  Identities=24%  Similarity=0.321  Sum_probs=105.7

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce-----------
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL-----------   71 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~-----------   71 (158)
                      .++++.+.++ ++.|+..  .+|+++||+|.+|++++|+||||||||||+++|++...        ..+           
T Consensus        36 ~~~~l~i~~l-~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~  112 (285)
T PRK14254         36 GETVIEARDL-NVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD  112 (285)
T ss_pred             CCceEEEEEE-EEEECCE--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence            4567777666 8888653  58999999999999999999999999999999997532        111           


Q ss_pred             --------eeeccccch-------hhHhh-----------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHH
Q 044538           72 --------RIGRHSRHL-------EDLLT-----------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        72 --------~~~~~~~~~-------~~~~~-----------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia  122 (158)
                              .+++.++..       .+.+.           ..+++.++++.+++...   ...+++.+||||||||++||
T Consensus       113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA  192 (285)
T PRK14254        113 VDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA  192 (285)
T ss_pred             cchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence                    122322221       11111           12346677888887521   12356789999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.++..+.+.++++  ..|||++|||+++
T Consensus       193 raL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~  241 (285)
T PRK14254        193 RAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQ  241 (285)
T ss_pred             HHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            98875            79999999999999876  3699999999764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3e-28  Score=202.16  Aligned_cols=141  Identities=23%  Similarity=0.290  Sum_probs=106.4

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~   71 (158)
                      +|+++.++ ++.|++  ..+++|+||+|++||+++|+||||||||||+++|++....                     +.
T Consensus         4 ~~l~~~~l-~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   80 (510)
T PRK09700          4 PYISMAGI-GKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL   80 (510)
T ss_pred             ceEEEeee-EEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence            56777666 888864  3589999999999999999999999999999999864210                     01


Q ss_pred             eeeccccch--------hhHh-------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 044538           72 RIGRHSRHL--------EDLL-------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV  124 (158)
Q Consensus        72 ~~~~~~~~~--------~~~~-------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~  124 (158)
                      .+++.++..        .+.+                   ...+++.++++.+++....+ +++.+|||||||||+||++
T Consensus        81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~qrv~ia~a  159 (510)
T PRK09700         81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD-EKVANLSISHKQMLEIAKT  159 (510)
T ss_pred             CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcc-cchhhCCHHHHHHHHHHHH
Confidence            234433221        0100                   11245677899999976544 6779999999999999988


Q ss_pred             Hhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          125 SMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       125 ~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ++.            +||+.++..+.+.++++   +.|||+||||+++
T Consensus       160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~  207 (510)
T PRK09700        160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAE  207 (510)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            775            79999999999888664   4799999999754

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.7e-28  Score=184.71  Aligned_cols=143  Identities=21%  Similarity=0.335  Sum_probs=104.5

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------   71 (158)
                      .|++.+.++ +++|+..  .+|+++||+|++|++++|+||||||||||+++|++...        ..+            
T Consensus         4 ~~~l~~~~l-~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   80 (253)
T PRK14242          4 PPKMEARGL-SFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV   80 (253)
T ss_pred             CcEEEEeee-EEEECCe--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence            467777776 9999643  58999999999999999999999999999999997521        110            


Q ss_pred             -------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHH
Q 044538           72 -------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMF  121 (158)
Q Consensus        72 -------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~i  121 (158)
                             .+++.++..       .+.+.             ..+++.++++.+++.+.   ...+++.+||||||||++|
T Consensus        81 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l  160 (253)
T PRK14242         81 DVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCI  160 (253)
T ss_pred             CHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence                   133332221       01110             12345567788887431   1235678999999999999


Q ss_pred             HHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          122 TLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       122 a~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      |++++.            +||+.+...+.+.++++.  .|||++|||+++
T Consensus       161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~  210 (253)
T PRK14242        161 ARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQ  210 (253)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHH
Confidence            988775            699999999999887653  699999999754

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.6e-28  Score=183.65  Aligned_cols=139  Identities=22%  Similarity=0.308  Sum_probs=102.8

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------------
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------------   69 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------------   69 (158)
                      +.+.++ ++.|++.  .+++++||++++||+++|+||||||||||+++|++....                         
T Consensus         3 l~~~~l-~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (242)
T PRK11124          3 IQLNGI-NCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE   79 (242)
T ss_pred             EEEEee-EEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence            444555 8888653  589999999999999999999999999999999964211                         


Q ss_pred             -ceeeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538           70 -KLRIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY  127 (158)
Q Consensus        70 -~~~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~  127 (158)
                       +..+++.++..        .+...             ..+.+.++++.+|++...+ +++.+||||||||++||++++.
T Consensus        80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~  158 (242)
T PRK11124         80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-RFPLHLSGGQQQRVAIARALMM  158 (242)
T ss_pred             HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhc
Confidence             00133333221        11110             1234567788999976544 5678999999999999998774


Q ss_pred             ------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                                  +||+.++..+.+.+++.   +.|+|++|||.++
T Consensus       159 ~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~  203 (242)
T PRK11124        159 EPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV  203 (242)
T ss_pred             CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence                        69999999998888754   5799999999753

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.8e-28  Score=206.53  Aligned_cols=145  Identities=21%  Similarity=0.250  Sum_probs=106.7

Q ss_pred             chhhhhheeeeEEcCCC---------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------
Q 044538           12 SPMLQLIEVISFSYPNL---------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------   69 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~---------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------   69 (158)
                      ++++++.++ ++.|+..         ...+|+++||+|++||+++|+||||||||||+++|++....             
T Consensus       311 ~~~L~~~~l-~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~  389 (623)
T PRK10261        311 EPILQVRNL-VTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID  389 (623)
T ss_pred             CceEEEeee-EEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence            357777666 8888621         13589999999999999999999999999999999853210             


Q ss_pred             ----------ceeeeccccch----h------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHH
Q 044538           70 ----------KLRIGRHSRHL----E------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQK  116 (158)
Q Consensus        70 ----------~~~~~~~~~~~----~------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  116 (158)
                                +..+++.+|..    .      +.+             ...+++.++++.+|++....++++++||||||
T Consensus       390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr  469 (623)
T PRK10261        390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR  469 (623)
T ss_pred             cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence                      11244444431    0      000             01135667899999963223356799999999


Q ss_pred             HHHHHHHHHhh------------CCCHHHHHHHHHHHhh----cCCeEEEEeecCCC
Q 044538          117 VRVMFTLVSMY------------HLDTQSIVAVAVTLDE----FAGGVVLVSHDSRL  157 (158)
Q Consensus       117 qrv~ia~~~l~------------~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~~  157 (158)
                      |||+||++++.            +||+.++..+++.+++    .+.|||+||||+++
T Consensus       470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~  526 (623)
T PRK10261        470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAV  526 (623)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            99999998875            6999999999988854    35799999999864

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.95  E-value=3.8e-28  Score=184.70  Aligned_cols=139  Identities=24%  Similarity=0.339  Sum_probs=102.1

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce---------------
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL---------------   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~---------------   71 (158)
                      +.+.++ ++.|+..  .+++|+||+|++||+++|+||||||||||+++|++....        .+               
T Consensus         2 l~~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~   78 (247)
T TIGR00972         2 IEIENL-NLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV   78 (247)
T ss_pred             EEEEEE-EEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence            445555 8888753  489999999999999999999999999999999875421        11               


Q ss_pred             ----eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCC----CCCCCCCCCCCChHHHHHHHHHH
Q 044538           72 ----RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLP----GHNHLTPIANLSGGQKVRVMFTL  123 (158)
Q Consensus        72 ----~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~----~~~~~~~~~~LSgGqkqrv~ia~  123 (158)
                          .+++.++..       .+.+.             ..+.+.++++.+++.    ... ++++.+||||||||++||+
T Consensus        79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~lar  157 (247)
T TIGR00972        79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRL-HDSALGLSGGQQQRLCIAR  157 (247)
T ss_pred             HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHh-hCCcccCCHHHHHHHHHHH
Confidence                122222210       01100             123456788889996    333 3567899999999999999


Q ss_pred             HHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          124 VSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       124 ~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      +++.            +||+.+...+.+.+++..  .|||++|||+++
T Consensus       158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~  205 (247)
T TIGR00972       158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQ  205 (247)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHH
Confidence            8775            699999999999887653  699999999763

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.95  E-value=4.9e-28  Score=184.56  Aligned_cols=137  Identities=24%  Similarity=0.333  Sum_probs=101.2

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------------
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------------   69 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------------   69 (158)
                      +.++ ++.|+.  ..+++|+||+|++||+++|+||||||||||+++|++....                           
T Consensus         3 ~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~   79 (252)
T TIGR03005         3 FSDV-TKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE   79 (252)
T ss_pred             EEEE-EEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence            3444 888864  3589999999999999999999999999999999964211                           


Q ss_pred             ------ceeeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538           70 ------KLRIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        70 ------~~~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia  122 (158)
                            +..+++.++..        .+.+.             ..+.+.++++.+++.+... +++.+|||||+||++||
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~la  158 (252)
T TIGR03005        80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-HMPAQLSGGQQQRVAIA  158 (252)
T ss_pred             hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-cChhhcCHHHHHHHHHH
Confidence                  01123222210        01110             1234667889999976544 56689999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.++..+.+.+++.    +.|+|++|||+++
T Consensus       159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~  209 (252)
T TIGR03005       159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF  209 (252)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            98775            69999999998888654    5799999999754

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.95  E-value=3.2e-28  Score=201.68  Aligned_cols=141  Identities=23%  Similarity=0.318  Sum_probs=106.2

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~   71 (158)
                      +|+.+.++ +++|++  ..+|+|+||+|.+|++++|+||||||||||+++|++....                     +.
T Consensus         3 ~~i~~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~   79 (501)
T PRK10762          3 ALLQLKGI-DKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA   79 (501)
T ss_pred             ceEEEeee-EEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence            46777666 888864  3589999999999999999999999999999999864210                     01


Q ss_pred             eeeccccch--------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538           72 RIGRHSRHL--------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY  127 (158)
Q Consensus        72 ~~~~~~~~~--------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~  127 (158)
                      .+++.++..        .+.+                ...+++.++++.+++.+..+ +++.+|||||||||+||++++.
T Consensus        80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~  158 (501)
T PRK10762         80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD-KLVGELSIGEQQMVEIAKVLSF  158 (501)
T ss_pred             CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCcc-CchhhCCHHHHHHHHHHHHHhc
Confidence            234433321        0100                01245677899999986554 5779999999999999988775


Q ss_pred             ------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                                  +||+.++.++.+.++++   +.|||+||||+++
T Consensus       159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~  203 (501)
T PRK10762        159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKE  203 (501)
T ss_pred             CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence                        79999999998877654   5699999999764

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.2e-28  Score=185.12  Aligned_cols=143  Identities=22%  Similarity=0.312  Sum_probs=103.7

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~------------   71 (158)
                      ++++.+.++ ++.|++.  .+++++||+|++||+++|+||||||||||+++|++....        .+            
T Consensus         5 ~~~l~~~~l-~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   81 (254)
T PRK14273          5 EAIIETENL-NLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF   81 (254)
T ss_pred             CceEEEeee-EEEeCCc--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence            457777776 8888753  589999999999999999999999999999999975321        11            


Q ss_pred             -------eeeccccch-------hhHh-------------hHHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHH
Q 044538           72 -------RIGRHSRHL-------EDLL-------------TMEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMF  121 (158)
Q Consensus        72 -------~~~~~~~~~-------~~~~-------------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~i  121 (158)
                             .+++.++..       .+.+             ...+.+.++++.+++..   ...++++.+||||||||++|
T Consensus        82 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l  161 (254)
T PRK14273         82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI  161 (254)
T ss_pred             cHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence                   122222210       0100             01234556777777731   11235678999999999999


Q ss_pred             HHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          122 TLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       122 a~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      |++++.            +||+.+...+.+.++++.  .|||++|||+++
T Consensus       162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~  211 (254)
T PRK14273        162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQ  211 (254)
T ss_pred             HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            998875            699999999998887764  699999999764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.95  E-value=3.4e-28  Score=200.99  Aligned_cols=143  Identities=26%  Similarity=0.315  Sum_probs=106.9

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      .+++.+.++ ++.|++.  .+|+|+||+|++||+++|+||||||||||+++|++....                      
T Consensus       258 ~~~l~~~~l-~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~  334 (490)
T PRK10938        258 EPRIVLNNG-VVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI  334 (490)
T ss_pred             CceEEEece-EEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHH
Confidence            457777666 8888643  489999999999999999999999999999999974321                      


Q ss_pred             ceeeeccccch----------hhHh--------------h--HHHHHHHHHHHcCCCC-CCCCCCCCCCChHHHHHHHHH
Q 044538           70 KLRIGRHSRHL----------EDLL--------------T--MEEAVHAKLRKFGLPG-HNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        70 ~~~~~~~~~~~----------~~~~--------------~--~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~ia  122 (158)
                      +..+++.++..          .+..              .  ..+.+.++++.+++.. .. ++++.+|||||||||+||
T Consensus       335 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~qrv~la  413 (490)
T PRK10938        335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-DAPFHSLSWGQQRLALIV  413 (490)
T ss_pred             HhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-cCchhhCCHHHHHHHHHH
Confidence            01133333211          0000              0  1234677889999976 44 467799999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhc---C-CeEEEEeecCCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEF---A-GGVVLVSHDSRLI  158 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~---~-~tvi~vtHd~~~~  158 (158)
                      ++++.            +||+.+...+.+.|+++   + .|||+||||++++
T Consensus       414 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~  465 (490)
T PRK10938        414 RALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA  465 (490)
T ss_pred             HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh
Confidence            88775            69999999999988765   2 4699999998753

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.2e-28  Score=184.72  Aligned_cols=141  Identities=23%  Similarity=0.311  Sum_probs=103.3

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce--------------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL--------------   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~--------------   71 (158)
                      ++.+.++ ++.|++.  .+++++||+|++|++++|+||||||||||+++|++...        ..+              
T Consensus         3 ~l~~~~l-~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   79 (250)
T PRK14247          3 KIEIRDL-KVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE   79 (250)
T ss_pred             eEEEEee-EEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence            3555565 8888653  58999999999999999999999999999999997642        111              


Q ss_pred             ---eeeccccch--------hhHhh--------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHH
Q 044538           72 ---RIGRHSRHL--------EDLLT--------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTL  123 (158)
Q Consensus        72 ---~~~~~~~~~--------~~~~~--------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~  123 (158)
                         .+++.++..        .+.+.              ..+.+.++++.+++...   ..++++.+||||||||++||+
T Consensus        80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar  159 (250)
T PRK14247         80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIAR  159 (250)
T ss_pred             HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHH
Confidence               123322211        01110              12345677888888531   223567899999999999999


Q ss_pred             HHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          124 VSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       124 ~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      +++.            +||+.++..+.+.+++.  +.|+|++|||+++
T Consensus       160 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~  207 (250)
T PRK14247        160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQ  207 (250)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            8775            69999999999988765  3799999999764

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.95  E-value=8.2e-28  Score=183.22  Aligned_cols=143  Identities=24%  Similarity=0.398  Sum_probs=102.8

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh--h---cce---------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR--R---QKL---------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~--~---~~~---------------   71 (158)
                      ++++.+.++ ++.|++.  .+|+++||++++||+++|+||||||||||+++|++..  .   ..+               
T Consensus         5 ~~~l~~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~   81 (252)
T CHL00131          5 KPILEIKNL-HASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER   81 (252)
T ss_pred             CceEEEEeE-EEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhh
Confidence            346777666 8888743  5899999999999999999999999999999999741  1   100               


Q ss_pred             ---eeeccccch--------hhHhh-------------------HHHHHHHHHHHcCCCCCCCCCCCC-CCChHHHHHHH
Q 044538           72 ---RIGRHSRHL--------EDLLT-------------------MEEAVHAKLRKFGLPGHNHLTPIA-NLSGGQKVRVM  120 (158)
Q Consensus        72 ---~~~~~~~~~--------~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~  120 (158)
                         .+++.++..        .+.+.                   ..+.+.++++.+++.+...++++. .|||||+||++
T Consensus        82 ~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~  161 (252)
T CHL00131         82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE  161 (252)
T ss_pred             heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence               122222210        00000                   013356678899996322234555 59999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.+...+.+.++++   +.|||++|||+++
T Consensus       162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~  213 (252)
T CHL00131        162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL  213 (252)
T ss_pred             HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            9998775            69999999999888765   5799999999763

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.8e-28  Score=185.40  Aligned_cols=144  Identities=22%  Similarity=0.335  Sum_probs=104.0

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce-----------
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL-----------   71 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~-----------   71 (158)
                      .++++.+.++ ++.|++  ..+|+++||+|.+|++++|+||||||||||+++|++...        ..+           
T Consensus        18 ~~~~l~~~~l-~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   94 (268)
T PRK14248         18 KEHILEVKDL-SIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN   94 (268)
T ss_pred             CCceEEEEEE-EEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence            3457777776 999874  358999999999999999999999999999999987421        111           


Q ss_pred             --------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHH
Q 044538           72 --------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVM  120 (158)
Q Consensus        72 --------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~  120 (158)
                              .+++.++..       .+.+.             ..+.+.+.++.+++...   ..++++.+||||||||++
T Consensus        95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~  174 (268)
T PRK14248         95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC  174 (268)
T ss_pred             ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence                    123322221       11110             11234556777777421   123567899999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.++..+.+.++++.  .|||++|||+++
T Consensus       175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~  225 (268)
T PRK14248        175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQ  225 (268)
T ss_pred             HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHH
Confidence            9998875            699999999999887763  699999999753

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.95  E-value=4.1e-28  Score=200.92  Aligned_cols=140  Identities=21%  Similarity=0.292  Sum_probs=104.1

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c--------------------e
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K--------------------L   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~--------------------~   71 (158)
                      +++.++ ++.|++  ..+|+++||++++|++++|+||||||||||+++|++....   .                    .
T Consensus         2 l~i~~l-~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (500)
T TIGR02633         2 LEMKGI-VKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA   78 (500)
T ss_pred             EEEEeE-EEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence            344455 888864  3589999999999999999999999999999999975321   0                    1


Q ss_pred             eeeccccch--------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538           72 RIGRHSRHL--------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY  127 (158)
Q Consensus        72 ~~~~~~~~~--------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~  127 (158)
                      .+++.++..        .+.+                ...+++.++++.+++.....++++.+|||||||||+||++++.
T Consensus        79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~  158 (500)
T TIGR02633        79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK  158 (500)
T ss_pred             CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence            133433321        0000                0123567789999997644345679999999999999988775


Q ss_pred             ------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                                  +||+.+..++.+.++++   +.|||+||||+++
T Consensus       159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~  203 (500)
T TIGR02633       159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE  203 (500)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence                        79999999998887664   5699999999764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.95  E-value=7.6e-29  Score=179.99  Aligned_cols=141  Identities=18%  Similarity=0.243  Sum_probs=103.7

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIG   74 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~   74 (158)
                      |+++..+ +++|+.. ..+++||||++++|+++||+|||||||||++|+|+....+                   +..+|
T Consensus         1 Ml~v~~l-~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG   78 (245)
T COG4555           1 MLEVTDL-TKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG   78 (245)
T ss_pred             Ceeeeeh-hhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence            3455555 8888763 3489999999999999999999999999999999853211                   01122


Q ss_pred             cccc--chhhHh------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538           75 RHSR--HLEDLL------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        75 ~~~~--~~~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                      ..+.  .+...+                  ..+.++.++.+.+++.+..+ +++.+||-||||||+||+|++.       
T Consensus        79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-rRv~~~S~G~kqkV~iARAlvh~P~i~vl  157 (245)
T COG4555          79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-RRVGEFSTGMKQKVAIARALVHDPSILVL  157 (245)
T ss_pred             eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-HHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence            1110  011111                  12356777888999987666 5679999999999999999774       


Q ss_pred             -----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 -----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                           +||..+...+.+.+++.   +.+|||+||++++
T Consensus       158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~E  195 (245)
T COG4555         158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQE  195 (245)
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHH
Confidence                 69998888888877665   4699999999864

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.95  E-value=4.5e-28  Score=186.59  Aligned_cols=133  Identities=21%  Similarity=0.247  Sum_probs=100.0

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeeeccc
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIGRHS   77 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~~~~   77 (158)
                      ++.|+.  ..+|+++||++++|++++|+||||||||||+++|++....                        ...+++.+
T Consensus        31 ~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~  108 (269)
T cd03294          31 LKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVF  108 (269)
T ss_pred             hhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEe
Confidence            777764  3589999999999999999999999999999999864211                        01234333


Q ss_pred             cch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538           78 RHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------  127 (158)
Q Consensus        78 ~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------  127 (158)
                      +..        .+.+.            ..+++.++++.+++.+... +++.+||||||||++||++++.          
T Consensus       109 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~lAral~~~p~illLDEP  187 (269)
T cd03294         109 QSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-KYPDELSGGMQQRVGLARALAVDPDILLMDEA  187 (269)
T ss_pred             cCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            221        11110            1234667889999976544 5678999999999999998775          


Q ss_pred             --CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 --HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                        +||+.++..+.+.+.++    +.|||++|||+++
T Consensus       188 t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~  223 (269)
T cd03294         188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDE  223 (269)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence              69999999999988664    4799999999753

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.1e-28  Score=186.39  Aligned_cols=141  Identities=27%  Similarity=0.359  Sum_probs=105.2

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR   72 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~   72 (158)
                      .++.+.++ ++.|+..  .+|+++||++.+|++++|+||||||||||+++|++....                    ...
T Consensus         6 ~~l~i~~l-~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (265)
T PRK10253          6 ARLRGEQL-TLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR   82 (265)
T ss_pred             cEEEEEEE-EEEECCE--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence            45666666 8888743  589999999999999999999999999999999964211                    011


Q ss_pred             eeccccch--------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           73 IGRHSRHL--------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        73 ~~~~~~~~--------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                      +++.++..        .+..                ...+.+.++++.+++..... +++.+||||||||++||++++. 
T Consensus        83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~  161 (265)
T PRK10253         83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-QSVDTLSGGQRQRAWIAMVLAQE  161 (265)
T ss_pred             eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-CCcccCChHHHHHHHHHHHHhcC
Confidence            33332210        0110                01235667889999976544 5679999999999999998775 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                 +||+.+...+.+.+.++    +.|||++|||+++
T Consensus       162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~  206 (265)
T PRK10253        162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQ  206 (265)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                       69999999998888664    4699999999863

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.95  E-value=8.3e-28  Score=182.71  Aligned_cols=140  Identities=22%  Similarity=0.324  Sum_probs=99.5

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---hcc--------------------e
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---RQK--------------------L   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---~~~--------------------~   71 (158)
                      +.+.++ ++.|++.  ++++++||+|++|++++|+||||||||||+++|++..   ...                    .
T Consensus         2 i~~~nl-~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (248)
T PRK09580          2 LSIKDL-HVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE   78 (248)
T ss_pred             eEEEEE-EEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence            455555 8888753  5899999999999999999999999999999999862   110                    0


Q ss_pred             eeeccccchh---------------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCC-CCChHHHHHHHHHH
Q 044538           72 RIGRHSRHLE---------------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIA-NLSGGQKVRVMFTL  123 (158)
Q Consensus        72 ~~~~~~~~~~---------------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~ia~  123 (158)
                      .+++.++...               ...            ...+.+.+.++.+++++....+++. +||||||||++||+
T Consensus        79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar  158 (248)
T PRK09580         79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ  158 (248)
T ss_pred             ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence            1232222110               000            0123345677788885333334554 79999999999999


Q ss_pred             HHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          124 VSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       124 ~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      +++.            +||+.+...+.+.++++   +.|||++|||+++
T Consensus       159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~  207 (248)
T PRK09580        159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI  207 (248)
T ss_pred             HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            8775            69999999998877654   4799999999753

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.95  E-value=5.8e-28  Score=184.49  Aligned_cols=140  Identities=21%  Similarity=0.267  Sum_probs=103.1

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------c---------------e
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------K---------------L   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------~---------------~   71 (158)
                      ++.+.++ +++| .  .++|+++||+|.+||+++|+||||||||||+++|++....       .               .
T Consensus         4 ~l~~~~l-~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~   79 (254)
T PRK10418          4 QIELRNI-ALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR   79 (254)
T ss_pred             EEEEeCe-EEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence            4556666 8888 2  3589999999999999999999999999999999975321       0               1


Q ss_pred             eeeccccch----hhHh----------------hHHHHHHHHHHHcCCCCC--CCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           72 RIGRHSRHL----EDLL----------------TMEEAVHAKLRKFGLPGH--NHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        72 ~~~~~~~~~----~~~~----------------~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      .+++.++..    .+..                ...+++.++++.+++.+.  ..++++.+|||||+||++||++++.  
T Consensus        80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p  159 (254)
T PRK10418         80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA  159 (254)
T ss_pred             eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence            133333321    1000                012456778899999752  1235678999999999999998775  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                +||+.+...+.+.++++    +.|||++|||+++
T Consensus       160 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~  203 (254)
T PRK10418        160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV  203 (254)
T ss_pred             CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence                      69999999888888654    4799999999753

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.95  E-value=2.5e-28  Score=183.75  Aligned_cols=137  Identities=16%  Similarity=0.168  Sum_probs=98.7

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeec
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGR   75 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~   75 (158)
                      +.++ ++.|+..  ++++|+||++++||+++|+||||||||||+++|++....                     ...+++
T Consensus         3 ~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (230)
T TIGR03410         3 VSNL-NVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY   79 (230)
T ss_pred             EEeE-EEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence            3444 8888643  589999999999999999999999999999999964210                     112343


Q ss_pred             cccch--h------hHhh---------HHHHHHHHHHHcC-CCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538           76 HSRHL--E------DLLT---------MEEAVHAKLRKFG-LPGHNHLTPIANLSGGQKVRVMFTLVSMY----------  127 (158)
Q Consensus        76 ~~~~~--~------~~~~---------~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------  127 (158)
                      .++..  .      +.+.         ..+...++++.++ +.... ++++.+|||||+||++||++++.          
T Consensus        80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~illlDEP  158 (230)
T TIGR03410        80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEML-GRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP  158 (230)
T ss_pred             eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            33321  0      1110         1123455677776 44433 35678999999999999988775          


Q ss_pred             --CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 --HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                        +||+.++..+.+.+.+.    +.|+|++|||+++
T Consensus       159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  194 (230)
T TIGR03410       159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF  194 (230)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence              69999999999988764    5799999999764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.3e-28  Score=185.55  Aligned_cols=143  Identities=28%  Similarity=0.357  Sum_probs=104.7

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------   71 (158)
                      .+++.+.++ ++.|+.  ..+|+|+||+|++|++++|+||||||||||+++|++...        ..+            
T Consensus        17 ~~~l~~~nl-~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~   93 (267)
T PRK14235         17 EIKMRARDV-SVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL   93 (267)
T ss_pred             CceEEEEeE-EEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence            456777676 888874  358999999999999999999999999999999997532        110            


Q ss_pred             -------eeeccccch-------hhHh--------------hHHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHH
Q 044538           72 -------RIGRHSRHL-------EDLL--------------TMEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVM  120 (158)
Q Consensus        72 -------~~~~~~~~~-------~~~~--------------~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~  120 (158)
                             .+++.++..       .+.+              ...+++.++++.+++...   ...+++.+||||||||++
T Consensus        94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~  173 (267)
T PRK14235         94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC  173 (267)
T ss_pred             chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence                   123322210       0111              012345667888898531   123467899999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.+...+.+.++++.  .|||++|||+++
T Consensus       174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~  224 (267)
T PRK14235        174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQ  224 (267)
T ss_pred             HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHH
Confidence            9998775            699999999999887653  699999999754

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=1.4e-28  Score=183.04  Aligned_cols=142  Identities=26%  Similarity=0.385  Sum_probs=105.4

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---------------------e
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---------------------L   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---------------------~   71 (158)
                      +++.+.++ +++|++-  .+++||||++.+||+++|||||||||||++|++++..++.                     .
T Consensus         3 ~lL~v~~l-~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~   79 (250)
T COG0411           3 PLLEVRGL-SKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL   79 (250)
T ss_pred             ceeeeccc-eeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhc
Confidence            45556666 8999764  5899999999999999999999999999999998532210                     1


Q ss_pred             eeeccccch---------h-----------------------hHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHH
Q 044538           72 RIGRHSRHL---------E-----------------------DLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRV  119 (158)
Q Consensus        72 ~~~~~~~~~---------~-----------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv  119 (158)
                      .+.+-+|..         .                       ..-...+++.++|+.+|+.+..+ .+..+||+|||+|+
T Consensus        80 Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~-~~A~~LsyG~qR~L  158 (250)
T COG0411          80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELAD-RPAGNLSYGQQRRL  158 (250)
T ss_pred             cceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhc-chhhcCChhHhHHH
Confidence            111111110         0                       01112366788999999998766 67899999999999


Q ss_pred             HHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCCC
Q 044538          120 MFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRLI  158 (158)
Q Consensus       120 ~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~~  158 (158)
                      .||+|++.            ++.+....++.+.+++.    +.||++|.||++++
T Consensus       159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~V  213 (250)
T COG0411         159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV  213 (250)
T ss_pred             HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHH
Confidence            99999875            46677777777777654    37999999999764

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=5.5e-28  Score=173.21  Aligned_cols=142  Identities=23%  Similarity=0.341  Sum_probs=106.2

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc----------------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK----------------------   70 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~----------------------   70 (158)
                      +.+.+.++ .++|+..  .+|++||++-.+|+++.|||.|||||||++|+|.....+.                      
T Consensus         5 ~~l~v~dl-HK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~   81 (256)
T COG4598           5 NALEVEDL-HKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK   81 (256)
T ss_pred             cceehhHH-Hhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence            34666666 8888765  4799999999999999999999999999999997432110                      


Q ss_pred             -----------eeeeccccch--hhHhh-------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHH
Q 044538           71 -----------LRIGRHSRHL--EDLLT-------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVR  118 (158)
Q Consensus        71 -----------~~~~~~~~~~--~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr  118 (158)
                                 -+.+..+|.+  +..++                   ..++++.+|.++|+.+..+ .++..|||||+||
T Consensus        82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~~LSGGQQQR  160 (256)
T COG4598          82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPAHLSGGQQQR  160 (256)
T ss_pred             eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCccccCchHHHH
Confidence                       0122222221  11111                   1266788999999988766 4558999999999


Q ss_pred             HHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538          119 VMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI  158 (158)
Q Consensus       119 v~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~  158 (158)
                      ++||||+..            .|||+-.-++++.++++   +.|+++|||.|.|+
T Consensus       161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FA  215 (256)
T COG4598         161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFA  215 (256)
T ss_pred             HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHH
Confidence            999998764            69999888877776554   68999999998763

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.7e-28  Score=184.53  Aligned_cols=143  Identities=24%  Similarity=0.336  Sum_probs=104.0

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------   71 (158)
                      .+++.+.++ ++.|+.  ..+|+|+||+|.+|++++|+||||||||||+++|++...        ..+            
T Consensus        10 ~~~l~~~~l-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   86 (258)
T PRK14268         10 QPQIKVENL-NLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV   86 (258)
T ss_pred             ceeEEEeee-EEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence            457777666 888864  358999999999999999999999999999999997532        100            


Q ss_pred             -------eeeccccch--h-----hHhh------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHH
Q 044538           72 -------RIGRHSRHL--E-----DLLT------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        72 -------~~~~~~~~~--~-----~~~~------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia  122 (158)
                             .+++.++..  .     +.+.            ..+.+.++++.+++..   ...++++.+|||||+||++||
T Consensus        87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la  166 (258)
T PRK14268         87 DVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA  166 (258)
T ss_pred             hHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence                   122222211  0     1010            1123566788888742   122356789999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.++..+.+.++++  +.|||++|||+++
T Consensus       167 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~  215 (258)
T PRK14268        167 RTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQ  215 (258)
T ss_pred             HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence            98875            69999999999988765  3799999999754

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=5.1e-28  Score=200.67  Aligned_cols=145  Identities=13%  Similarity=0.196  Sum_probs=105.5

Q ss_pred             chhhhhheeeeEEcCC-CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh----cc----------------
Q 044538           12 SPMLQLIEVISFSYPN-LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR----QK----------------   70 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~-~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~----~~----------------   70 (158)
                      .+++.+.++ ++.|+. +...+++|+||+|++|++++|+||||||||||+++|++...    ..                
T Consensus       257 ~~~l~~~~l-~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~  335 (506)
T PRK13549        257 EVILEVRNL-TAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQA  335 (506)
T ss_pred             CceEEEecC-ccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHH
Confidence            356777666 888842 22358999999999999999999999999999999997532    00                


Q ss_pred             --eeeeccccch-----h------hHh--------------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHH
Q 044538           71 --LRIGRHSRHL-----E------DLL--------------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVM  120 (158)
Q Consensus        71 --~~~~~~~~~~-----~------~~~--------------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~  120 (158)
                        ..+++.++..     .      +.+              .   ..+.+.++++.+++.....++++.+|||||||||+
T Consensus       336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~  415 (506)
T PRK13549        336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV  415 (506)
T ss_pred             HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence              0133333321     0      000              0   11346678899999632234677999999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.+...+.+.++++   +.|||++|||+++
T Consensus       416 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~  467 (506)
T PRK13549        416 LAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPE  467 (506)
T ss_pred             HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence            9988775            69999999988887654   5799999999864

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.95  E-value=8.7e-28  Score=199.82  Aligned_cols=145  Identities=23%  Similarity=0.300  Sum_probs=106.6

Q ss_pred             chhhhhheeeeEEcCC---CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---cce--------------
Q 044538           12 SPMLQLIEVISFSYPN---LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---QKL--------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~---~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---~~~--------------   71 (158)
                      .+|+.+.++ ++.|++   +...+|+++||+|++|++++|+||||||||||+++|++...   ..+              
T Consensus       277 ~~~l~~~~l-~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~  355 (520)
T TIGR03269       277 EPIIKVRNV-SKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP  355 (520)
T ss_pred             CceEEEecc-EEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence            457777776 888853   22358999999999999999999999999999999986421   011              


Q ss_pred             ----------eeeccccch--------hhHhh-----------HHHHHHHHHHHcCCCCC----CCCCCCCCCChHHHHH
Q 044538           72 ----------RIGRHSRHL--------EDLLT-----------MEEAVHAKLRKFGLPGH----NHLTPIANLSGGQKVR  118 (158)
Q Consensus        72 ----------~~~~~~~~~--------~~~~~-----------~~~~~~~~l~~~~l~~~----~~~~~~~~LSgGqkqr  118 (158)
                                .+++.++..        .+.+.           ..+++.++++.+++...    ..++++.+||||||||
T Consensus       356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr  435 (520)
T TIGR03269       356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR  435 (520)
T ss_pred             chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence                      134433321        01110           12345678899999642    2246779999999999


Q ss_pred             HHHHHHHhh------------CCCHHHHHHHHHHHhh----cCCeEEEEeecCCC
Q 044538          119 VMFTLVSMY------------HLDTQSIVAVAVTLDE----FAGGVVLVSHDSRL  157 (158)
Q Consensus       119 v~ia~~~l~------------~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~~  157 (158)
                      |+||++++.            +||+.+...+.+.+++    .+.|||+||||+++
T Consensus       436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~  490 (520)
T TIGR03269       436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF  490 (520)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence            999988775            6999999999998854    35799999999764

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.95  E-value=2e-27  Score=174.97  Aligned_cols=139  Identities=20%  Similarity=0.163  Sum_probs=100.6

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc----------------eeeecccc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK----------------LRIGRHSR   78 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~----------------~~~~~~~~   78 (158)
                      +.+.++ +++|+.  ..++ ++||+|++||+++|+||||||||||+++|++.....                ..+++.++
T Consensus         2 l~~~~l-~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   77 (195)
T PRK13541          2 LSLHQL-QFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH   77 (195)
T ss_pred             eEEEEe-eEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence            445555 888864  2345 599999999999999999999999999999753210                01222222


Q ss_pred             ch--------hhHhh-------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538           79 HL--------EDLLT-------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT  131 (158)
Q Consensus        79 ~~--------~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~  131 (158)
                      ..        .+...       ..+.+.++++.+++.+... +++.+||||||||++||++++.            +||+
T Consensus        78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~  156 (195)
T PRK13541         78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-EKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK  156 (195)
T ss_pred             CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            11        11111       1235667788899876544 5678999999999999988775            6999


Q ss_pred             HHHHHHHHHHhh---cCCeEEEEeecCCCC
Q 044538          132 QSIVAVAVTLDE---FAGGVVLVSHDSRLI  158 (158)
Q Consensus       132 ~~~~~l~~~l~~---~~~tvi~vtHd~~~~  158 (158)
                      .+...+.+.+++   .+.|+|++|||.+++
T Consensus       157 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~i  186 (195)
T PRK13541        157 ENRDLLNNLIVMKANSGGIVLLSSHLESSI  186 (195)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence            999999988863   357999999998753

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.95  E-value=6.8e-28  Score=180.37  Aligned_cols=137  Identities=20%  Similarity=0.263  Sum_probs=98.9

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeec
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGR   75 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~   75 (158)
                      +.++ +++|++.  ++++++||++.+|++++|+||||||||||+++|++....                     +..+++
T Consensus         3 ~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (222)
T cd03224           3 VENL-NAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY   79 (222)
T ss_pred             EeeE-EeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence            3444 7888643  589999999999999999999999999999999864210                     011333


Q ss_pred             cccch--------hhHhh----------HHHHHHHHHHHc-CCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538           76 HSRHL--------EDLLT----------MEEAVHAKLRKF-GLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------  127 (158)
Q Consensus        76 ~~~~~--------~~~~~----------~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------  127 (158)
                      .++..        .+.+.          ..+.+.++++.+ +++.... +++.+||||||||++||++++.         
T Consensus        80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDE  158 (222)
T cd03224          80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRK-QLAGTLSGGEQQMLAIARALMSRPKLLLLDE  158 (222)
T ss_pred             eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhh-CchhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            33221        01110          112345567777 4654433 5678999999999999988774         


Q ss_pred             ---CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ---HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                         +||+.++..+.+.++++   +.|+|++|||+++
T Consensus       159 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  194 (222)
T cd03224         159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF  194 (222)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence               69999999999988765   4699999999753

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.9e-28  Score=199.68  Aligned_cols=141  Identities=21%  Similarity=0.310  Sum_probs=106.7

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~   71 (158)
                      |++.+.++ ++.|++.  .+|+|+||++++|++++|+||||||||||+++|++....                     +.
T Consensus         3 ~~l~~~~l-~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   79 (501)
T PRK11288          3 PYLSFDGI-GKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA   79 (501)
T ss_pred             ceEEEeee-EEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence            56777666 8888643  589999999999999999999999999999999864210                     01


Q ss_pred             eeeccccch--------hhHh---------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           72 RIGRHSRHL--------EDLL---------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        72 ~~~~~~~~~--------~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                      .+++.+|..        .+.+               ...+++.++++.+++..... +++.+||||||||++||++++. 
T Consensus        80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~  158 (501)
T PRK11288         80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD-TPLKYLSIGQRQMVEIAKALARN  158 (501)
T ss_pred             CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcC-CchhhCCHHHHHHHHHHHHHHhC
Confidence            234433321        0000               11245677899999976544 5679999999999999988775 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                                 +||+.+..++.+.++++   +.|||+||||+++
T Consensus       159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~  202 (501)
T PRK11288        159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE  202 (501)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence                       69999999999888764   4799999999754

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.2e-28  Score=182.86  Aligned_cols=139  Identities=20%  Similarity=0.330  Sum_probs=102.3

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------cee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~   72 (158)
                      ++.+.++ ++.|+.  ..+++++||++++|++++|+||||||||||+++|++....                     +..
T Consensus         3 ~l~~~~l-~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (241)
T PRK10895          3 TLTAKNL-AKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG   79 (241)
T ss_pred             eEEEeCc-EEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence            4555565 888864  3589999999999999999999999999999999964210                     112


Q ss_pred             eeccccch--------hhHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           73 IGRHSRHL--------EDLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        73 ~~~~~~~~--------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      +++.++..        .+.+             .....+.++++.+++....+ +++.+|||||+||++||++++.    
T Consensus        80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~l  158 (241)
T PRK10895         80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD-SMGQSLSGGERRRVEIARALAANPKF  158 (241)
T ss_pred             eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhh-cchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            33333221        0110             01234667889999876544 5678999999999999988764    


Q ss_pred             --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                              +||+.++..+.+.+++.   +.|+|++|||++
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~  198 (241)
T PRK10895        159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR  198 (241)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence                    69999998888777543   579999999975

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.95  E-value=6.9e-28  Score=179.54  Aligned_cols=144  Identities=28%  Similarity=0.353  Sum_probs=108.2

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------   69 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------   69 (158)
                      .++++.+.++ ++.|.++  .+|+|+|++|++||.++|+||||||||||++++++...+                     
T Consensus        28 ~~~li~l~~v-~v~r~gk--~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el  104 (257)
T COG1119          28 NEPLIELKNV-SVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL  104 (257)
T ss_pred             CcceEEecce-EEEECCE--eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence            3455677776 8888764  589999999999999999999999999999999853211                     


Q ss_pred             ceeeeccccch------------------------hh-Hh--hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538           70 KLRIGRHSRHL------------------------ED-LL--TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        70 ~~~~~~~~~~~------------------------~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia  122 (158)
                      +..+|+.....                        .. ..  ...+++..+++.+|+..... ++..+||-||||||.||
T Consensus       105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~-r~~~~LS~Ge~rrvLia  183 (257)
T COG1119         105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLAD-RPFGSLSQGEQRRVLIA  183 (257)
T ss_pred             HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhcc-CchhhcCHhHHHHHHHH
Confidence            01122111000                        00 01  12356778999999987554 78899999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhcC-----CeEEEEeecCCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEFA-----GGVVLVSHDSRLI  158 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~~-----~tvi~vtHd~~~~  158 (158)
                      ||++.            +||..++..+.+.+.+..     .++|+|||..+++
T Consensus       184 RALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi  236 (257)
T COG1119         184 RALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEI  236 (257)
T ss_pred             HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhc
Confidence            99875            699999999999888764     4699999987753

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.95  E-value=8.6e-28  Score=183.99  Aligned_cols=140  Identities=28%  Similarity=0.323  Sum_probs=103.1

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      |+.+.++ ++.|+.  ..+|+++||+|++|++++|+||||||||||+++|++....                    ...+
T Consensus         2 ~l~~~~l-~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i   78 (258)
T PRK13548          2 MLEARNL-SVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR   78 (258)
T ss_pred             eEEEEeE-EEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence            3455555 888875  3589999999999999999999999999999999964211                    0113


Q ss_pred             eccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh------h
Q 044538           74 GRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM------Y  127 (158)
Q Consensus        74 ~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l------~  127 (158)
                      ++.++..        .+.+.            ..+.+.++++.+++..... +.+.+||||||||++||++++      .
T Consensus        79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGe~qrv~la~al~~~~~~~~  157 (258)
T PRK13548         79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-RDYPQLSGGEQQRVQLARVLAQLWEPDG  157 (258)
T ss_pred             EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-CCcccCCHHHHHHHHHHHHHhcccccCC
Confidence            3332211        11110            1234667889999976544 567899999999999999988      2


Q ss_pred             ------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                  +||+.+...+.+.++++    +.|||++|||+++
T Consensus       158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~  203 (258)
T PRK13548        158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNL  203 (258)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence                        59999999888888654    4699999999754

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.95  E-value=6.7e-28  Score=200.50  Aligned_cols=137  Identities=24%  Similarity=0.279  Sum_probs=102.0

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---hc--ce--------------------
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---RQ--KL--------------------   71 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---~~--~~--------------------   71 (158)
                      +.++ +++|+.  ..+|+++||+|.+|++++|+||||||||||+++|++..   ..  .+                    
T Consensus         3 ~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g   79 (520)
T TIGR03269         3 VKNL-TKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG   79 (520)
T ss_pred             EEEE-EEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence            3444 888864  35899999999999999999999999999999999863   11  11                    


Q ss_pred             ------------------------------eeeccccc---hh------hHh------------hHHHHHHHHHHHcCCC
Q 044538           72 ------------------------------RIGRHSRH---LE------DLL------------TMEEAVHAKLRKFGLP  100 (158)
Q Consensus        72 ------------------------------~~~~~~~~---~~------~~~------------~~~~~~~~~l~~~~l~  100 (158)
                                                    .+++.++.   ..      +.+            ...+++.++++.++++
T Consensus        80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~  159 (520)
T TIGR03269        80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS  159 (520)
T ss_pred             cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence                                          12222221   00      000            0124566789999997


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          101 GHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       101 ~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .... +++.+|||||||||+||++++.            +||+.++.++.+.++++    +.|||+||||+++
T Consensus       160 ~~~~-~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~  231 (520)
T TIGR03269       160 HRIT-HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV  231 (520)
T ss_pred             hhhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            6544 5679999999999999998775            69999999998877654    5799999999864

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.95  E-value=6.6e-28  Score=200.93  Aligned_cols=145  Identities=21%  Similarity=0.342  Sum_probs=107.2

Q ss_pred             chhhhhheeeeEEcCC---------CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------
Q 044538           12 SPMLQLIEVISFSYPN---------LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------   69 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~---------~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------   69 (158)
                      .+++.+.++ ++.|+.         +...+|+++||+|++||+++|+||||||||||+++|++....             
T Consensus       273 ~~~l~~~~l-~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~  351 (529)
T PRK15134        273 SPLLDVEQL-QVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHN  351 (529)
T ss_pred             CCcccccCc-EEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccc
Confidence            457887777 998852         123589999999999999999999999999999999864210             


Q ss_pred             ---------ceeeeccccch----h------hHh-----------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHH
Q 044538           70 ---------KLRIGRHSRHL----E------DLL-----------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQK  116 (158)
Q Consensus        70 ---------~~~~~~~~~~~----~------~~~-----------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  116 (158)
                               +..+++.+|..    .      +.+           .   ..+++.++++.+++.....++++.+||||||
T Consensus       352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~  431 (529)
T PRK15134        352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR  431 (529)
T ss_pred             cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence                     11244444331    0      000           0   1234667889999963222357799999999


Q ss_pred             HHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          117 VRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       117 qrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      |||+||++++.            +||+.+...+.+.++++    +.|||+||||+++
T Consensus       432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~  488 (529)
T PRK15134        432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV  488 (529)
T ss_pred             HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence            99999988775            69999999999888753    5799999999764

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1e-27  Score=184.59  Aligned_cols=143  Identities=27%  Similarity=0.330  Sum_probs=103.7

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------   71 (158)
                      .+++.+.++ ++.|+.  ..+|+++||+|++|++++|+||||||||||+++|++...        ..+            
T Consensus        11 ~~~l~i~nl-~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~   87 (269)
T PRK14259         11 NIIISLQNV-TISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV   87 (269)
T ss_pred             CceEEEEeE-EEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence            356777776 888865  358999999999999999999999999999999987532        100            


Q ss_pred             -------eeeccccch--h-----hHhh-----------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHHH
Q 044538           72 -------RIGRHSRHL--E-----DLLT-----------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFTL  123 (158)
Q Consensus        72 -------~~~~~~~~~--~-----~~~~-----------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia~  123 (158)
                             .+++.++..  .     +.+.           ..+.+.++++.+++..   ...++++.+||||||||++||+
T Consensus        88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lar  167 (269)
T PRK14259         88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR  167 (269)
T ss_pred             CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHH
Confidence                   133333221  0     1010           1234456677777632   1223567899999999999999


Q ss_pred             HHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          124 VSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       124 ~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      +++.            +||+.+...+.+.++++.  .|||++|||+++
T Consensus       168 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~  215 (269)
T PRK14259        168 TIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQ  215 (269)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            8775            699999999999887653  699999999764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.95  E-value=8.6e-28  Score=199.01  Aligned_cols=144  Identities=13%  Similarity=0.202  Sum_probs=104.1

Q ss_pred             hhhhhheeeeEEcCC-CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----ce----------------
Q 044538           13 PMLQLIEVISFSYPN-LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----KL----------------   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~-~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----~~----------------   71 (158)
                      +++.+.++ ++.|+. +...+++++||+|.+||+++|+||||||||||+++|++...+    .+                
T Consensus       256 ~~l~~~~l-~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~  334 (500)
T TIGR02633       256 VILEARNL-TCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI  334 (500)
T ss_pred             ceEEEeCC-cccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence            46666666 777732 123589999999999999999999999999999999975321    00                


Q ss_pred             --eeeccccch-----hh------H--------h------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHH
Q 044538           72 --RIGRHSRHL-----ED------L--------L------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMF  121 (158)
Q Consensus        72 --~~~~~~~~~-----~~------~--------~------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i  121 (158)
                        .+++.++..     .+      .        .      .   ..+.+.++++.+++.....++++.+||||||||++|
T Consensus       335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l  414 (500)
T TIGR02633       335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL  414 (500)
T ss_pred             hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence              133333321     00      0        0      0   123466789999996433346779999999999999


Q ss_pred             HHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          122 TLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       122 a~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      |++++.            +||+.++..+.+.++++   +.|||++|||+++
T Consensus       415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~  465 (500)
T TIGR02633       415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAE  465 (500)
T ss_pred             HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence            988774            69999999888776554   5799999999864

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=190.67  Aligned_cols=133  Identities=23%  Similarity=0.230  Sum_probs=99.2

Q ss_pred             eeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeee
Q 044538           19 EVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIG   74 (158)
Q Consensus        19 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~   74 (158)
                      ++ +++|++.   .+ |+||++++||+++|+||||||||||+++|++....                        ...++
T Consensus         5 ~l-~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~   79 (352)
T PRK11144          5 NF-KQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG   79 (352)
T ss_pred             EE-EEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE
Confidence            55 7888642   23 89999999999999999999999999999964211                        01233


Q ss_pred             ccccch--h------hHhh------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538           75 RHSRHL--E------DLLT------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------H  128 (158)
Q Consensus        75 ~~~~~~--~------~~~~------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~  128 (158)
                      +.++..  .      +.+.      ..+++.++++.+++.+..+ +++.+|||||||||+||++++.            +
T Consensus        80 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~  158 (352)
T PRK11144         80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS  158 (352)
T ss_pred             EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence            333321  1      1111      1245678899999986554 5679999999999999998775            6


Q ss_pred             CCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          129 LDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       129 lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ||+..+..+.+.++++    +.|+|+||||+++
T Consensus       159 LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~  191 (352)
T PRK11144        159 LDLPRKRELLPYLERLAREINIPILYVSHSLDE  191 (352)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence            9999999888888654    5799999999753

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.95  E-value=1.3e-27  Score=177.69  Aligned_cols=135  Identities=27%  Similarity=0.348  Sum_probs=99.3

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR   78 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~   78 (158)
                      +.++ ++.|++.  .  .++||++.+|++++|+||||||||||+++|++....                  +..+++.++
T Consensus         3 ~~~l-~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   77 (211)
T cd03298           3 LDKI-RFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ   77 (211)
T ss_pred             EEeE-EEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence            3444 8888642  2  399999999999999999999999999999864211                  012333332


Q ss_pred             ch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           79 HL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        79 ~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      ..        .+.+            ...+++.++++.+++.+..+ +++.+||||||||++||++++.           
T Consensus        78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~  156 (211)
T cd03298          78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-RLPGELSGGERQRVALARVLVRDKPVLLLDEPF  156 (211)
T ss_pred             ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            21        1111            01235677899999976544 5678999999999999988775           


Q ss_pred             -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                       +||+.+...+.+.+++.    +.|||++|||+++
T Consensus       157 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  191 (211)
T cd03298         157 AALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED  191 (211)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence             69999999999888754    5799999999764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.95  E-value=8.9e-28  Score=203.87  Aligned_cols=138  Identities=25%  Similarity=0.414  Sum_probs=104.1

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce------eeeccccc-----
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL------RIGRHSRH-----   79 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~------~~~~~~~~-----   79 (158)
                      |+.+.++ +++|+.  ..+|+|+||+|++|++++|+||||||||||+++|++....   .+      .+++..+.     
T Consensus         3 ~l~i~~l-s~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~   79 (635)
T PRK11147          3 LISIHGA-WLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV   79 (635)
T ss_pred             EEEEeeE-EEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence            4566666 888875  3589999999999999999999999999999999975321   11      11111100     


Q ss_pred             ---hhhH------------------------------h----------------hHHHHHHHHHHHcCCCCCCCCCCCCC
Q 044538           80 ---LEDL------------------------------L----------------TMEEAVHAKLRKFGLPGHNHLTPIAN  110 (158)
Q Consensus        80 ---~~~~------------------------------~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~  110 (158)
                         ..+.                              +                ....++.++++.+|+..   ++++.+
T Consensus        80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~---~~~~~~  156 (635)
T PRK11147         80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP---DAALSS  156 (635)
T ss_pred             CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC---CCchhh
Confidence               0000                              0                01234566788888862   367899


Q ss_pred             CChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          111 LSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       111 LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      |||||||||+||++++.            +||+.++.++.+.|++++.|||+||||.++
T Consensus       157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~  215 (635)
T PRK11147        157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSF  215 (635)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            99999999999988775            799999999999999998899999999865

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.95  E-value=1.3e-27  Score=178.65  Aligned_cols=141  Identities=28%  Similarity=0.377  Sum_probs=100.6

Q ss_pred             hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538           16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR   75 (158)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~   75 (158)
                      .+.++ ++.|+.....+++|+||+|++|++++|+||||||||||+++|++....                    +..+++
T Consensus         4 ~~~~l-~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (220)
T cd03245           4 EFRNV-SFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY   82 (220)
T ss_pred             EEEEE-EEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence            34455 888865334589999999999999999999999999999999964321                    011333


Q ss_pred             cccch-------hhHhh------HHHHHHHHHHHcCCCCCCCCC----------CCCCCChHHHHHHHHHHHHhh-----
Q 044538           76 HSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNHLT----------PIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        76 ~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      .++..       .+...      ..+.+.++++.+++.+.....          ++.+||||||||++||++++.     
T Consensus        83 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll  162 (220)
T cd03245          83 VPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPIL  162 (220)
T ss_pred             eCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence            33221       11110      113455667777775433221          246999999999999998775     


Q ss_pred             -------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                             +||+.++..+.+.++++.  .|||++|||+++
T Consensus       163 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~  201 (220)
T cd03245         163 LLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSL  201 (220)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence                   799999999999998764  599999999753

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.5e-27  Score=182.28  Aligned_cols=138  Identities=28%  Similarity=0.361  Sum_probs=102.4

Q ss_pred             hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538           16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR   75 (158)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~   75 (158)
                      .+.++ ++.|+.  ..+|+++||++++||+++|+||||||||||+++|++....                    ...+++
T Consensus         3 ~~~~l-~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (256)
T TIGR03873         3 RLSRV-SWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL   79 (256)
T ss_pred             eEEeE-EEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence            34454 888864  3589999999999999999999999999999999964210                    011333


Q ss_pred             cccch--------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           76 HSRHL--------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        76 ~~~~~--------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      .++..        .+.+                ...+++.++++.+++....+ +++.+|||||+||++||++++.    
T Consensus        80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~l  158 (256)
T TIGR03873        80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-RDMSTLSGGERQRVHVARALAQEPKL  158 (256)
T ss_pred             ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            33221        0111                01134667889999976544 5678999999999999988775    


Q ss_pred             --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                              +||+.+...+.+.+++.   +.|||++|||+++
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  199 (256)
T TIGR03873       159 LLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL  199 (256)
T ss_pred             EEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                    69999999999888765   5799999999764

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=182.78  Aligned_cols=142  Identities=23%  Similarity=0.285  Sum_probs=102.5

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce-------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL-------------   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~-------------   71 (158)
                      +++.+.++ ++.|+.  .++|+|+||+|.+||+++|+||||||||||+++|++....        .+             
T Consensus         3 ~~l~~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~   79 (253)
T PRK14267          3 FAIETVNL-RVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD   79 (253)
T ss_pred             ceEEEEeE-EEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccC
Confidence            35666666 888865  3589999999999999999999999999999999976321        11             


Q ss_pred             ------eeeccccch--------hhHhh--------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHH
Q 044538           72 ------RIGRHSRHL--------EDLLT--------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVM  120 (158)
Q Consensus        72 ------~~~~~~~~~--------~~~~~--------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~  120 (158)
                            .+++.++..        .+.+.              ..+.+.++++.+++...   ..++++.+||||||||++
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~  159 (253)
T PRK14267         80 PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV  159 (253)
T ss_pred             hHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence                  122222210        01000              01235567788887421   123567899999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.+...+.+.++++.  .|||++|||+++
T Consensus       160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~  210 (253)
T PRK14267        160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ  210 (253)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence            9998775            699999999999887753  699999999764

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.95  E-value=1.1e-27  Score=179.66  Aligned_cols=137  Identities=20%  Similarity=0.268  Sum_probs=102.3

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c-------------eeeeccccch
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K-------------LRIGRHSRHL   80 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~-------------~~~~~~~~~~   80 (158)
                      +.++ ++.|+.  ..+++++||++.+|++++|+||||||||||+++|++....   .             ..+++.++..
T Consensus         3 l~~v-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~   79 (223)
T TIGR03740         3 TKNL-SKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP   79 (223)
T ss_pred             EEeE-EEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence            3444 788864  3589999999999999999999999999999999974211   0             1233332211


Q ss_pred             --------hhHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538           81 --------EDLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ  132 (158)
Q Consensus        81 --------~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~  132 (158)
                              .+...        ..+++.++++.+++.+..+ +++.+|||||+||++||++++.            +||+.
T Consensus        80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~  158 (223)
T TIGR03740        80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI  158 (223)
T ss_pred             CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHH
Confidence                    11111        1245677889999976544 5678999999999999988775            69999


Q ss_pred             HHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          133 SIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       133 ~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ++..+.+.+.++   +.|||++|||.++
T Consensus       159 ~~~~l~~~L~~~~~~~~tiii~sH~~~~  186 (223)
T TIGR03740       159 GIQELRELIRSFPEQGITVILSSHILSE  186 (223)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            999999988765   4699999999764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.3e-27  Score=183.09  Aligned_cols=144  Identities=22%  Similarity=0.298  Sum_probs=103.0

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce-----------
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL-----------   71 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~-----------   71 (158)
                      ..+++.+.++ ++.|+..  .+|+++||+|++||+++|+||||||||||+++|++...        ..+           
T Consensus        17 ~~~~l~~~nl-~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~   93 (274)
T PRK14265         17 DHSVFEVEGV-KVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ   93 (274)
T ss_pred             CCceEEEeeE-EEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence            3457777666 8888753  58999999999999999999999999999999996421        110           


Q ss_pred             --------eeeccccch-------hhHhh-----------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHH
Q 044538           72 --------RIGRHSRHL-------EDLLT-----------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        72 --------~~~~~~~~~-------~~~~~-----------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia  122 (158)
                              .+++.++..       .+.+.           ..+.+.++++.+++..   ....+++.+|||||+||++||
T Consensus        94 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA  173 (274)
T PRK14265         94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA  173 (274)
T ss_pred             chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence                    123333221       11110           1123345667777631   112356789999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.++..+.+.|.++  +.|||++|||.++
T Consensus       174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~  222 (274)
T PRK14265        174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQ  222 (274)
T ss_pred             HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            98775            69999999999999776  3699999999754

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.3e-27  Score=192.54  Aligned_cols=126  Identities=24%  Similarity=0.301  Sum_probs=96.4

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeeeccccch------
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIGRHSRHL------   80 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~~~~~~~------   80 (158)
                      .+++++||+|++||+++|+||||||||||+++|++....                        +..+++.+|..      
T Consensus        42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~  121 (400)
T PRK10070         42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM  121 (400)
T ss_pred             EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence            479999999999999999999999999999999863210                        01244443321      


Q ss_pred             --hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH
Q 044538           81 --EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI  134 (158)
Q Consensus        81 --~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~  134 (158)
                        .+.+.            ..+++.++++.+++.+..+ +++.+||||||||++||++++.            +||+.++
T Consensus       122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r  200 (400)
T PRK10070        122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR  200 (400)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence              11110            1245677899999987554 5679999999999999998775            6999999


Q ss_pred             HHHHHHHhhc----CCeEEEEeecCCC
Q 044538          135 VAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       135 ~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ..+.+.+.++    +.|||+||||+++
T Consensus       201 ~~l~~~L~~l~~~~g~TIIivTHd~~~  227 (400)
T PRK10070        201 TEMQDELVKLQAKHQRTIVFISHDLDE  227 (400)
T ss_pred             HHHHHHHHHHHHHCCCeEEEEECCHHH
Confidence            9998888654    5799999999764

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.4e-27  Score=182.66  Aligned_cols=141  Identities=23%  Similarity=0.353  Sum_probs=102.1

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce--------------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL--------------   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~--------------   71 (158)
                      ++.+.++ +++|++.  .+|+++||+|++|++++|+||||||||||+++|++...        ..+              
T Consensus         4 ~l~i~~v-~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~   80 (258)
T PRK14241          4 RIDVKDL-NIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP   80 (258)
T ss_pred             cEEEeeE-EEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence            4566666 8888653  58999999999999999999999999999999997532        111              


Q ss_pred             -----eeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHH
Q 044538           72 -----RIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        72 -----~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia  122 (158)
                           .+++.++..        .+.+.             ..+.+.++++.+++..   ...++++.+||||||||++||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  160 (258)
T PRK14241         81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA  160 (258)
T ss_pred             HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence                 122222210        01100             1234556788888742   122356789999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.+...+.+.++++  +.|||++|||+++
T Consensus       161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~  209 (258)
T PRK14241        161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQ  209 (258)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            98774            79999999999988765  3699999999754

>PLN03073 ABC transporter F family; Provisional

Probab=99.95  E-value=7.7e-28  Score=205.86  Aligned_cols=141  Identities=18%  Similarity=0.295  Sum_probs=104.6

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh----hcceeeeccccc-------h--
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR----RQKLRIGRHSRH-------L--   80 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~----~~~~~~~~~~~~-------~--   80 (158)
                      ++.+.++ +++|++.  .+|+|+||+|.+|+++||+||||||||||+++|++..    .....+.+..|.       .  
T Consensus       177 ~I~i~nl-s~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~  253 (718)
T PLN03073        177 DIHMENF-SISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ  253 (718)
T ss_pred             eEEEceE-EEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence            5666666 9999643  4899999999999999999999999999999998632    111222221110       0  


Q ss_pred             --------------------h------------------------hH-----------------hhHHHHHHHHHHHcCC
Q 044538           81 --------------------E------------------------DL-----------------LTMEEAVHAKLRKFGL   99 (158)
Q Consensus        81 --------------------~------------------------~~-----------------~~~~~~~~~~l~~~~l   99 (158)
                                          .                        +.                 +..++++..++..+|+
T Consensus       254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl  333 (718)
T PLN03073        254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF  333 (718)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence                                0                        00                 0011344556777777


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          100 PGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       100 ~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      .....++++.+||||||||++||++++.            +||+.++.++.+.|++++.|||+||||.++
T Consensus       334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~  403 (718)
T PLN03073        334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREF  403 (718)
T ss_pred             ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            5433446779999999999999988775            799999999999999999999999999764

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.5e-27  Score=179.96  Aligned_cols=137  Identities=26%  Similarity=0.344  Sum_probs=100.7

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH   76 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~   76 (158)
                      +.+.++ ++.|+..    ..++||++.+|++++|+||||||||||+++|++....                  ...+++.
T Consensus         2 l~~~~l-~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~   76 (232)
T PRK10771          2 LKLTDI-TWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML   76 (232)
T ss_pred             eEEEEE-EEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence            445555 8888642    2389999999999999999999999999999864211                  0123333


Q ss_pred             ccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538           77 SRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------  127 (158)
Q Consensus        77 ~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------  127 (158)
                      ++..        .+.+            ...+++.++++.++++...+ +++.+||||||||++||++++.         
T Consensus        77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDE  155 (232)
T PRK10771         77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-RLPGQLSGGQRQRVALARCLVREQPILLLDE  155 (232)
T ss_pred             ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            3211        1110            01245677899999976544 5678999999999999988775         


Q ss_pred             ---CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ---HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                         +||+.++..+.+.+++.    +.|+|++|||+++
T Consensus       156 P~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~  192 (232)
T PRK10771        156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED  192 (232)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence               69999999998888654    4699999999864

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.95  E-value=1.4e-27  Score=183.84  Aligned_cols=143  Identities=24%  Similarity=0.311  Sum_probs=103.6

Q ss_pred             hhhhheeeeEEcCCC-------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------
Q 044538           14 MLQLIEVISFSYPNL-------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------   69 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~-------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------   69 (158)
                      ++.+.++ ++.|+..       .+.+++|+||+|.+|++++|+||||||||||+++|++....                 
T Consensus         3 ~l~~~nl-~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~   81 (268)
T PRK10419          3 LLNVSGL-SHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR   81 (268)
T ss_pred             eEEEece-EEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence            4666666 8888731       24689999999999999999999999999999999864210                 


Q ss_pred             ------ceeeeccccch----------hhHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHH
Q 044538           70 ------KLRIGRHSRHL----------EDLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVM  120 (158)
Q Consensus        70 ------~~~~~~~~~~~----------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~  120 (158)
                            ...+++.++..          .+..             .....+.++++.+++.....++++.+|||||+||++
T Consensus        82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~  161 (268)
T PRK10419         82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC  161 (268)
T ss_pred             hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence                  01233333221          0000             011346778899999632233567899999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.+...+.+.++++    +.|+|++|||+++
T Consensus       162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~  214 (268)
T PRK10419        162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRL  214 (268)
T ss_pred             HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHH
Confidence            9998775            69999988888877654    5799999999754

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=1.2e-27  Score=183.85  Aligned_cols=126  Identities=21%  Similarity=0.248  Sum_probs=93.3

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeeeccccch--hhH--
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIGRHSRHL--EDL--   83 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~~~~~~~--~~~--   83 (158)
                      -++|+||+++.||++.|+|-||||||||+|++.....+                        +..++.++|.+  .+.  
T Consensus        43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt  122 (386)
T COG4175          43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT  122 (386)
T ss_pred             eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence            47899999999999999999999999999999743211                        11222233322  111  


Q ss_pred             ----------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHH
Q 044538           84 ----------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIV  135 (158)
Q Consensus        84 ----------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~  135 (158)
                                      ....+++.++++.+||..+.+ +++++|||||||||.+|||+..            .|||--+.
T Consensus       123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~-~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~  201 (386)
T COG4175         123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD-KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT  201 (386)
T ss_pred             HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh-cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence                            112467888999999998877 4569999999999999999765            57875554


Q ss_pred             H----HHHHHhhcCCeEEEEeecCCCC
Q 044538          136 A----VAVTLDEFAGGVVLVSHDSRLI  158 (158)
Q Consensus       136 ~----l~~~l~~~~~tvi~vtHd~~~~  158 (158)
                      +    ++++-+++++||||||||++++
T Consensus       202 ~mQdeLl~Lq~~l~KTIvFitHDLdEA  228 (386)
T COG4175         202 EMQDELLELQAKLKKTIVFITHDLDEA  228 (386)
T ss_pred             HHHHHHHHHHHHhCCeEEEEecCHHHH
Confidence            4    4444456678999999998763

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.95  E-value=1.3e-27  Score=179.50  Aligned_cols=139  Identities=22%  Similarity=0.267  Sum_probs=100.7

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---cee------------eecccc-
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR------------IGRHSR-   78 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~------------~~~~~~-   78 (158)
                      +.+.++ ++.|+.  .++++++||+|++|++++|+||||||||||++++++....   .+.            .++.+. 
T Consensus        23 l~~~~~-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~   99 (224)
T cd03220          23 LGILGR-KGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL   99 (224)
T ss_pred             hhhhhh-hhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence            344444 777765  3589999999999999999999999999999999975321   110            011110 


Q ss_pred             chhhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH
Q 044538           79 HLEDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI  134 (158)
Q Consensus        79 ~~~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~  134 (158)
                      ...+.+            ...+++.++++.+++.+... +++.+||||||||++||++++.            +||+.++
T Consensus       100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~  178 (224)
T cd03220         100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-LPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQ  178 (224)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            001111            01234566788889976544 5779999999999999988775            6999999


Q ss_pred             HHHHHHHhhc---CCeEEEEeecCCC
Q 044538          135 VAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       135 ~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ..+.+.+++.   +.|||++|||.++
T Consensus       179 ~~~~~~l~~~~~~~~tiii~sH~~~~  204 (224)
T cd03220         179 EKCQRRLRELLKQGKTVILVSHDPSS  204 (224)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            9888888664   4699999999754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.9e-27  Score=181.87  Aligned_cols=143  Identities=22%  Similarity=0.313  Sum_probs=104.0

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------   71 (158)
                      .+++.+.++ ++.|+.  +++|+++||++.+||+++|+||||||||||+++|++...        ..+            
T Consensus        18 ~~~l~~~nl-~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   94 (267)
T PRK14237         18 EIALSTKDL-HVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI   94 (267)
T ss_pred             CeEEEEeeE-EEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence            456777776 888864  358999999999999999999999999999999997542        100            


Q ss_pred             -------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHH
Q 044538           72 -------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMF  121 (158)
Q Consensus        72 -------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~i  121 (158)
                             .+++.++..       .+.+.             ..+++.++++.+++..   ....+++.+|||||+||++|
T Consensus        95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~l  174 (267)
T PRK14237         95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCI  174 (267)
T ss_pred             ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHH
Confidence                   123322211       01000             1233456678888742   12235678999999999999


Q ss_pred             HHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          122 TLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       122 a~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      |++++.            +||+.+...+.+.+++..  .|||++|||+++
T Consensus       175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~  224 (267)
T PRK14237        175 ARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQ  224 (267)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            998775            699999999998887653  699999999754

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.1e-27  Score=180.94  Aligned_cols=142  Identities=23%  Similarity=0.307  Sum_probs=102.8

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh--------hcce-------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR--------RQKL-------------   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~--------~~~~-------------   71 (158)
                      +++.+.++ ++.|+.  ..+++++||+|.+|++++|+||||||||||+++|++..        ...+             
T Consensus         2 ~~l~~~~~-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   78 (250)
T PRK14245          2 VKIDARDV-NFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ   78 (250)
T ss_pred             cEEEEEEE-EEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence            46666666 888865  35899999999999999999999999999999998631        1100             


Q ss_pred             ------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHH
Q 044538           72 ------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        72 ------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia  122 (158)
                            .+++.++..       .+.+.             ..+.+.++++.+++.+.   ...+++.+||||||||++||
T Consensus        79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  158 (250)
T PRK14245         79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA  158 (250)
T ss_pred             HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence                  123322210       01110             11345677888888531   12356789999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.++..+.+.++++.  .|||++|||+++
T Consensus       159 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~  207 (250)
T PRK14245        159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQ  207 (250)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            88775            699999999999887753  699999999753

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.95  E-value=1.5e-27  Score=199.66  Aligned_cols=141  Identities=23%  Similarity=0.386  Sum_probs=105.1

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccchh--
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHLE--   81 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~~--   81 (158)
                      .|+.+.++ +++|++. .++|+|+||+|++|++++|+||||||||||+++|++...+         ...+++.++...  
T Consensus         3 ~~i~~~nl-s~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~   80 (552)
T TIGR03719         3 YIYTMNRV-SKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD   80 (552)
T ss_pred             EEEEEeeE-EEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCC
Confidence            46666666 9999732 3589999999999999999999999999999999975321         123444433210  


Q ss_pred             ------hHhh------------------------------------------------HHHHHHHHHHHcCCCCCCCCCC
Q 044538           82 ------DLLT------------------------------------------------MEEAVHAKLRKFGLPGHNHLTP  107 (158)
Q Consensus        82 ------~~~~------------------------------------------------~~~~~~~~l~~~~l~~~~~~~~  107 (158)
                            +...                                                ...++.++++.++++. . +++
T Consensus        81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-~~~  158 (552)
T TIGR03719        81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-W-DAD  158 (552)
T ss_pred             CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-c-cCc
Confidence                  0000                                                0012344566677753 2 357


Q ss_pred             CCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          108 IANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       108 ~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      +.+|||||||||+||++++.            +||+.+..++.+.+++++.|||+||||+++
T Consensus       159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~  220 (552)
T TIGR03719       159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYF  220 (552)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            79999999999999988775            799999999999999988899999999764

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.6e-27  Score=185.05  Aligned_cols=144  Identities=24%  Similarity=0.292  Sum_probs=103.2

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce-----------
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL-----------   71 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~-----------   71 (158)
                      .++++.+.++ ++.|+..  .+|+|+||+|.+|++++|+||||||||||+++|++...        ..+           
T Consensus        36 ~~~~l~~~~l-~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~  112 (286)
T PRK14275         36 GKPHVVAKNF-SIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF  112 (286)
T ss_pred             CceEEEEeee-EEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc
Confidence            3456676666 8888643  48999999999999999999999999999999998421        100           


Q ss_pred             --------eeeccccch-------hhHh-------------hHHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHH
Q 044538           72 --------RIGRHSRHL-------EDLL-------------TMEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVM  120 (158)
Q Consensus        72 --------~~~~~~~~~-------~~~~-------------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~  120 (158)
                              .+++.++..       .+.+             ...+.+.++++.+++..   ...++++.+||||||||++
T Consensus       113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~  192 (286)
T PRK14275        113 TDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC  192 (286)
T ss_pred             cchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence                    123322221       0000             01233456677777632   1223567899999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.+...+.+.++++.  .|||++|||.++
T Consensus       193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~  243 (286)
T PRK14275        193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ  243 (286)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            9998775            799999999999997763  589999999764

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.95  E-value=2.9e-27  Score=178.72  Aligned_cols=139  Identities=24%  Similarity=0.324  Sum_probs=96.0

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeecc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGRH   76 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~~   76 (158)
                      +.++ ++.|+....++++++||++++|++++|+||||||||||+++|++....                    +..+++.
T Consensus         3 ~~~l-~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   81 (237)
T cd03252           3 FEHV-RFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVV   81 (237)
T ss_pred             EEEE-EEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEE
Confidence            3444 888865334689999999999999999999999999999999964211                    0123443


Q ss_pred             ccch--h-----hHhhH------HHHHH---------HHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           77 SRHL--E-----DLLTM------EEAVH---------AKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        77 ~~~~--~-----~~~~~------~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      ++..  .     +.+..      .+.+.         +.++.+  ++..... +++.+|||||||||+||++++.     
T Consensus        82 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~p~ll  160 (237)
T cd03252          82 LQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPRIL  160 (237)
T ss_pred             cCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhh-cCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence            3321  0     11000      11122         223333  3333222 4678999999999999998775     


Q ss_pred             -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                             +||+.++..+.+.++++  +.|||++|||+++
T Consensus       161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~  199 (237)
T cd03252         161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLST  199 (237)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence                   69999999999988765  4699999999864

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.95  E-value=1.5e-27  Score=180.52  Aligned_cols=127  Identities=24%  Similarity=0.299  Sum_probs=95.2

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeeccc-cc--hh------
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRHS-RH--LE------   81 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~~-~~--~~------   81 (158)
                      .++|+++||+|++|++++|+||||||||||+++|++...+                   ...+++.+ +.  +.      
T Consensus        34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~  113 (236)
T cd03267          34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI  113 (236)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence            4689999999999999999999999999999999964211                   01233322 11  10      


Q ss_pred             hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538           82 DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV  137 (158)
Q Consensus        82 ~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l  137 (158)
                      +.+.            ..+.+.++++.+++.+... +++.+||||||||++||++++.            +||+.+...+
T Consensus       114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l  192 (236)
T cd03267         114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLD-TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI  192 (236)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence            1110            1234566788889976544 5678999999999999988775            6999999999


Q ss_pred             HHHHhhc----CCeEEEEeecCCC
Q 044538          138 AVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       138 ~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .+.+.++    +.|||++|||+++
T Consensus       193 ~~~l~~~~~~~~~tiiivsH~~~~  216 (236)
T cd03267         193 RNFLKEYNRERGTTVLLTSHYMKD  216 (236)
T ss_pred             HHHHHHHHhcCCCEEEEEecCHHH
Confidence            9988765    4699999999764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.95  E-value=3.2e-27  Score=178.47  Aligned_cols=136  Identities=23%  Similarity=0.299  Sum_probs=101.0

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR   78 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~   78 (158)
                      +.++ ++.|+.   .+++++||+|.+||+++|+||||||||||+++|++....                  ...+++.++
T Consensus         3 ~~~l-~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q   78 (235)
T cd03299           3 VENL-SKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ   78 (235)
T ss_pred             eEeE-EEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence            3344 778864   279999999999999999999999999999999864211                  012333222


Q ss_pred             ch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           79 HL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        79 ~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      ..  .      +.+            ...+.+.++++.+++..... +++.+|||||+||++||++++.           
T Consensus        79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt  157 (235)
T cd03299          79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-RKPETLSGGEQQRVAIARALVVNPKILLLDEPF  157 (235)
T ss_pred             cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-cCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence            10  0      111            01234567889999976554 5678999999999999998775           


Q ss_pred             -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                       +||+.++..+++.+++.    +.|+|++|||+++
T Consensus       158 ~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~  192 (235)
T cd03299         158 SALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE  192 (235)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence             69999999999988764    5799999999754

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.2e-27  Score=182.51  Aligned_cols=143  Identities=19%  Similarity=0.316  Sum_probs=103.9

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~------------   71 (158)
                      ++++.+.++ +++|+.  .++++|+||+|++||+++|+||||||||||+++|++....        .+            
T Consensus        19 ~~~l~i~nl-~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~   95 (276)
T PRK14271         19 APAMAAVNL-TLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD   95 (276)
T ss_pred             CcEEEEeeE-EEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence            567777776 999974  3589999999999999999999999999999999975321        00            


Q ss_pred             ------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHH
Q 044538           72 ------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        72 ------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia  122 (158)
                            .+++.++..       .+.+.             ..+.+.++++.+++...   ...+++.+|||||+||++||
T Consensus        96 ~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA  175 (276)
T PRK14271         96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA  175 (276)
T ss_pred             hHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence                  122322211       11110             01223456788888532   12245789999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.++..+.+.|+++  ..|||++|||+++
T Consensus       176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~  224 (276)
T PRK14271        176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQ  224 (276)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            98775            69999999999888765  3699999999764

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.1e-27  Score=180.95  Aligned_cols=141  Identities=21%  Similarity=0.302  Sum_probs=102.2

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce--------------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL--------------   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~--------------   71 (158)
                      ++.+.++ +++|+.  .++|+++||+|.+||+++|+||||||||||+++|++...        ..+              
T Consensus         4 ~l~~~~l-~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~   80 (251)
T PRK14251          4 IISAKDV-HLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL   80 (251)
T ss_pred             eEEEEee-EEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence            5666666 888864  358999999999999999999999999999999997642        100              


Q ss_pred             -----eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHHH
Q 044538           72 -----RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFTL  123 (158)
Q Consensus        72 -----~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia~  123 (158)
                           .+++.++..       .+.+.             ..+.+.++++.+++..   ...++++.+|||||+||++||+
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar  160 (251)
T PRK14251         81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR  160 (251)
T ss_pred             HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence                 122222210       01110             1124556778888842   1123567899999999999998


Q ss_pred             HHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          124 VSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       124 ~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      +++.            +||+.+...+.+.++++  +.|||++|||+++
T Consensus       161 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~  208 (251)
T PRK14251        161 ALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQ  208 (251)
T ss_pred             HHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            8765            69999999999988776  4699999999764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.3e-27  Score=198.44  Aligned_cols=139  Identities=13%  Similarity=0.203  Sum_probs=102.3

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~   71 (158)
                      +++.+.++ ++.|.    .+|+|+||+|++|++++|+||||||||||+++|++....                     +.
T Consensus       264 ~~l~~~~l-~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~  338 (510)
T PRK09700        264 TVFEVRNV-TSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK  338 (510)
T ss_pred             cEEEEeCc-cccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence            46666555 65542    279999999999999999999999999999999864210                     01


Q ss_pred             eeeccccc-----h------hhHh---------------------hHHHHHHHHHHHcCCC-CCCCCCCCCCCChHHHHH
Q 044538           72 RIGRHSRH-----L------EDLL---------------------TMEEAVHAKLRKFGLP-GHNHLTPIANLSGGQKVR  118 (158)
Q Consensus        72 ~~~~~~~~-----~------~~~~---------------------~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqr  118 (158)
                      .+++.++.     +      .+.+                     ...+.+.++++.+++. +.. ++++.+||||||||
T Consensus       339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~qr  417 (510)
T PRK09700        339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-NQNITELSGGNQQK  417 (510)
T ss_pred             CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc-cCccccCChHHHHH
Confidence            24444432     1      0000                     0112456789999996 444 46789999999999


Q ss_pred             HHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          119 VMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       119 v~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      |+||++++.            +||+.+...+.+.++++   +.|||+||||+++
T Consensus       418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~  471 (510)
T PRK09700        418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE  471 (510)
T ss_pred             HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            999988764            69999999999988654   5799999999764

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.95  E-value=2.4e-27  Score=177.34  Aligned_cols=141  Identities=23%  Similarity=0.240  Sum_probs=99.2

Q ss_pred             hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538           16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR   75 (158)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~   75 (158)
                      .+.++ ++.|+.....+++++||+|++|++++|+||||||||||+++|++....                    +..+++
T Consensus         4 ~~~~l-~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (221)
T cd03244           4 EFKNV-SLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI   82 (221)
T ss_pred             EEEEE-EEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence            34455 888875434689999999999999999999999999999999964211                    011333


Q ss_pred             cccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh------
Q 044538           76 HSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        76 ~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                      .++..       .+.+.     ..+++.+.++.+++.+...          ..++..|||||+||++||++++.      
T Consensus        83 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll  162 (221)
T cd03244          83 IPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILV  162 (221)
T ss_pred             ECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            33221       01100     1133445555555543211          13568999999999999988775      


Q ss_pred             ------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                            +||+.++..+.+.+++.  +.|||++|||.++
T Consensus       163 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~  200 (221)
T cd03244         163 LDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDT  200 (221)
T ss_pred             EeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence                  69999999999999775  3689999999754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.95  E-value=4.8e-27  Score=176.38  Aligned_cols=144  Identities=24%  Similarity=0.380  Sum_probs=103.5

Q ss_pred             chhhhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------c
Q 044538           12 SPMLQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------K   70 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~   70 (158)
                      .+++.+.++ ++.|++.. ..+++++||+|++|++++|+||||||||||+++|++....                    .
T Consensus         9 ~~~l~~~~l-~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~   87 (226)
T cd03248           9 KGIVKFQNV-TFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH   87 (226)
T ss_pred             CceEEEEEE-EEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence            457777776 99997532 3589999999999999999999999999999999964211                    0


Q ss_pred             eeeeccccch--h-----hHhh-------H---HH-----HHHHHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           71 LRIGRHSRHL--E-----DLLT-------M---EE-----AVHAKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        71 ~~~~~~~~~~--~-----~~~~-------~---~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                      ..+++.++..  .     +.+.       .   .+     .+.++++.+  |+..... .++.+|||||+||++||++++
T Consensus        88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LSgG~~qrv~laral~  166 (226)
T cd03248          88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVG-EKGSQLSGGQKQRVAIARALI  166 (226)
T ss_pred             hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHHHHHHHHHHHHh
Confidence            1133332221  0     0000       0   01     123456667  6765444 457899999999999998877


Q ss_pred             h------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      .            +||+.++..+.+.++++.  .|+|++|||+++
T Consensus       167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~  211 (226)
T cd03248         167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLST  211 (226)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence            5            699999999999887653  699999999764

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.8e-27  Score=180.31  Aligned_cols=142  Identities=25%  Similarity=0.303  Sum_probs=101.9

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh--------hcce-------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR--------RQKL-------------   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~--------~~~~-------------   71 (158)
                      +++.+.++ ++.|+..  .+++++||+|++||+++|+||||||||||+++|++..        ...+             
T Consensus         4 ~~l~~~~l-~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~   80 (252)
T PRK14239          4 PILQVSDL-SVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD   80 (252)
T ss_pred             ceEEEEee-EEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence            46776666 8888743  5899999999999999999999999999999998641        1110             


Q ss_pred             ------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHH
Q 044538           72 ------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        72 ------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia  122 (158)
                            .+++.++..       .+.+.             ..+.+.++++.+++...   ...+++.+||||||||++||
T Consensus        81 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  160 (252)
T PRK14239         81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA  160 (252)
T ss_pred             hHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence                  123322211       01110             11234456777776421   12356789999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.+...+.+.++++  +.|||++|||+++
T Consensus       161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~  209 (252)
T PRK14239        161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQ  209 (252)
T ss_pred             HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHH
Confidence            88775            69999999999988775  3699999999753

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.95  E-value=6.1e-27  Score=175.29  Aligned_cols=139  Identities=27%  Similarity=0.368  Sum_probs=102.1

Q ss_pred             hhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------c
Q 044538           16 QLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------K   70 (158)
Q Consensus        16 ~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~   70 (158)
                      .+.++ ++.|+.+  ...+++++||++++|++++|+||||||||||+++|++....                       +
T Consensus         3 ~~~~l-~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (220)
T TIGR02982         3 SIRNL-NHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR   81 (220)
T ss_pred             EEEEE-EEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence            34455 8888643  14589999999999999999999999999999999964210                       0


Q ss_pred             eeeeccccch--------hhHh----------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           71 LRIGRHSRHL--------EDLL----------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        71 ~~~~~~~~~~--------~~~~----------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ..+++.++..        .+..          .   ..+.+.++++.+++.+... +++.+||+|||||++||++++.  
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrv~laral~~~p  160 (220)
T TIGR02982        82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-YYPHNLSGGQKQRVAIARALVHRP  160 (220)
T ss_pred             hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHHHHHHhcCC
Confidence            1233332221        0000          0   1235678889999976544 5678999999999999988774  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR  156 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~  156 (158)
                                +||+.++..+.+.++++    +.|+|++|||++
T Consensus       161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~  203 (220)
T TIGR02982       161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR  203 (220)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence                      69999998888888654    579999999975

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.9e-27  Score=181.16  Aligned_cols=143  Identities=24%  Similarity=0.315  Sum_probs=104.1

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------   71 (158)
                      .+++.+.++ ++.|+..  .+|+|+||+|++|++++|+||||||||||+++|++...        ..+            
T Consensus        11 ~~~l~~~~l-~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~   87 (260)
T PRK10744         11 PSKIQVRNL-NFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ   87 (260)
T ss_pred             CceEEEEEE-EEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence            456776666 8888643  58999999999999999999999999999999997632        111            


Q ss_pred             -------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHH
Q 044538           72 -------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMF  121 (158)
Q Consensus        72 -------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~i  121 (158)
                             .+++.++..       .+.+.             ..+++.++++.+++..   ...++++.+|||||+||++|
T Consensus        88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l  167 (260)
T PRK10744         88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI  167 (260)
T ss_pred             chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence                   122322211       01000             1234567788888742   11234668999999999999


Q ss_pred             HHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          122 TLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       122 a~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      |++++.            +||+.+...+.+.++++  +.|||++|||+++
T Consensus       168 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~  217 (260)
T PRK10744        168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ  217 (260)
T ss_pred             HHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            998775            69999999999988776  3699999999753

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3e-27  Score=180.01  Aligned_cols=141  Identities=24%  Similarity=0.313  Sum_probs=101.6

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cc---------------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QK---------------   70 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~---------------   70 (158)
                      |+.+.++ ++.|+.  .++++++||++++||+++|+||||||||||+++|++...        ..               
T Consensus         3 ~l~~~~l-~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~   79 (250)
T PRK14262          3 IIEIENF-SAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV   79 (250)
T ss_pred             eEEEEee-EEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence            5566666 888864  358999999999999999999999999999999996432        10               


Q ss_pred             ----eeeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHH
Q 044538           71 ----LRIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTL  123 (158)
Q Consensus        71 ----~~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~  123 (158)
                          ..+++.++..       .+.+.             ..+.+.++++.+++...   ...+++.+|||||+||++||+
T Consensus        80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~  159 (250)
T PRK14262         80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR  159 (250)
T ss_pred             HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence                0122222210       01110             11234556777887532   123567899999999999999


Q ss_pred             HHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          124 VSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       124 ~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      +++.            +||+.++..+.+.+.++  +.|+|++|||++.
T Consensus       160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~  207 (250)
T PRK14262        160 ALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQ  207 (250)
T ss_pred             HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            8775            69999999999988765  3699999999763

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.95  E-value=4.3e-27  Score=175.31  Aligned_cols=135  Identities=23%  Similarity=0.289  Sum_probs=99.3

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR   78 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~   78 (158)
                      +.++ ++.|+.    .+.++||++++|++++|+||||||||||+++|++....                  +..+++.++
T Consensus         3 ~~~l-~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q   77 (213)
T TIGR01277         3 LDKV-RYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ   77 (213)
T ss_pred             EEee-eEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence            3444 888862    36799999999999999999999999999999964211                  011333322


Q ss_pred             ch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           79 HL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        79 ~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      ..        .+...            ..+++.++++.+++.+..+ +++.+|||||+||++||++++.           
T Consensus        78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt  156 (213)
T TIGR01277        78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-RLPEQLSGGQRQRVALARCLVRPNPILLLDEPF  156 (213)
T ss_pred             cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            21        11110            1235667899999976544 5678999999999999988765           


Q ss_pred             -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                       +||+.++..+.+.+++.    +.|||+||||.++
T Consensus       157 ~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~  191 (213)
T TIGR01277       157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD  191 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence             69999999988888664    4699999999754

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.3e-27  Score=179.95  Aligned_cols=143  Identities=22%  Similarity=0.296  Sum_probs=102.0

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cc-------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QK-------------   70 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~-------------   70 (158)
                      .+|+.+.++ ++.|+.  ..+|+++||+|.+|++++|+||||||||||+++|++...        ..             
T Consensus         3 ~~~l~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   79 (252)
T PRK14255          3 KKIITSSDV-HLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE   79 (252)
T ss_pred             cceEEEEeE-EEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence            356777666 899874  358999999999999999999999999999999987421        10             


Q ss_pred             ------eeeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHH
Q 044538           71 ------LRIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMF  121 (158)
Q Consensus        71 ------~~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~i  121 (158)
                            ..+++.++..       .+.+.             ..+.+.+.++.+++..   ....+++.+||||||||++|
T Consensus        80 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~l  159 (252)
T PRK14255         80 DVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCI  159 (252)
T ss_pred             cHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHH
Confidence                  0133333221       00000             0123344566676531   11234678999999999999


Q ss_pred             HHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          122 TLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       122 a~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      |++++.            +||+.+...+.+.++++  +.|+|++|||+++
T Consensus       160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~  209 (252)
T PRK14255        160 ARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ  209 (252)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHH
Confidence            988775            69999999999988776  3699999999764

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.3e-27  Score=180.09  Aligned_cols=143  Identities=23%  Similarity=0.303  Sum_probs=103.8

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------   71 (158)
                      ++++.+.++ ++.|+..  .+|+++||+|++||+++|+||||||||||+++|++...        ..+            
T Consensus        10 ~~~l~i~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~   86 (259)
T PRK14274         10 QEVYQINGM-NLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV   86 (259)
T ss_pred             CceEEEeeE-EEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence            457777776 8888743  58999999999999999999999999999999987532        111            


Q ss_pred             -------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHH
Q 044538           72 -------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMF  121 (158)
Q Consensus        72 -------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~i  121 (158)
                             .+++.++..       .+.+.             ..+++.++++.+++.+.   ...+++.+||||||||++|
T Consensus        87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~l  166 (259)
T PRK14274         87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCI  166 (259)
T ss_pred             CHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence                   122222210       01000             01234556778887531   1235678999999999999


Q ss_pred             HHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          122 TLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       122 a~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      |++++.            +||+.+...+.+.+.++  +.|+|++|||++.
T Consensus       167 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~  216 (259)
T PRK14274        167 ARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQ  216 (259)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence            988775            69999999999988776  3699999999753

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.8e-27  Score=203.46  Aligned_cols=141  Identities=24%  Similarity=0.331  Sum_probs=105.7

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~   74 (158)
                      +.+.++ +|+|+...+++|+|+||++++||.++|+||||||||||+++|++...+                    +..++
T Consensus       452 I~~~nv-sf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~  530 (686)
T TIGR03797       452 IEVDRV-TFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG  530 (686)
T ss_pred             EEEEEE-EEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence            556666 999975545789999999999999999999999999999999864321                    11244


Q ss_pred             ccccch-------hhHh-----hHHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh-----
Q 044538           75 RHSRHL-------EDLL-----TMEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        75 ~~~~~~-------~~~~-----~~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      +.+|+.       .++.     ..++++.++++..++.+...      +    .....||||||||++||||++.     
T Consensus       531 ~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL  610 (686)
T TIGR03797       531 VVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL  610 (686)
T ss_pred             EEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            444431       1111     12456677777777653211      1    1235799999999999999875     


Q ss_pred             -------CCCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538          128 -------HLDTQSIVAVAVTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~  156 (158)
                             +||+.+...+.+.+++.+.|+|+|||+++
T Consensus       611 iLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~  646 (686)
T TIGR03797       611 LFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLS  646 (686)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChH
Confidence                   69999999999999988889999999875

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.9e-27  Score=179.39  Aligned_cols=140  Identities=21%  Similarity=0.348  Sum_probs=100.0

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce---------------
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL---------------   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~---------------   71 (158)
                      +.+.++ ++.|++.  .+++|+||+|++||+++|+||||||||||+++|++...        ..+               
T Consensus         4 l~~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~   80 (250)
T PRK14240          4 ISVKDL-DLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN   80 (250)
T ss_pred             EEEEEE-EEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence            445555 8888653  58999999999999999999999999999999997421        100               


Q ss_pred             ----eeeccccch-------hhHh-------------hHHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHHHH
Q 044538           72 ----RIGRHSRHL-------EDLL-------------TMEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFTLV  124 (158)
Q Consensus        72 ----~~~~~~~~~-------~~~~-------------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia~~  124 (158)
                          .+++.++..       .+.+             ...+.+.++++.+++..   ...++++.+|||||+||++||++
T Consensus        81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  160 (250)
T PRK14240         81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARA  160 (250)
T ss_pred             HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence                123322221       0000             01234455677777642   11235678999999999999998


Q ss_pred             Hhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          125 SMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       125 ~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      ++.            +||+.++..+.+.++++  +.|||++|||++.
T Consensus       161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~  207 (250)
T PRK14240        161 LAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQ  207 (250)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence            775            69999999999988765  3699999999763

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.9e-27  Score=179.77  Aligned_cols=141  Identities=22%  Similarity=0.283  Sum_probs=100.7

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~   71 (158)
                      +|+.+.++ ++.|+.  ..+++++||+|.+||+++|+||||||||||+++|++....                     ..
T Consensus         4 ~~l~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~   80 (237)
T PRK11614          4 VMLSFDKV-SAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE   80 (237)
T ss_pred             cEEEEEeE-EEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHh
Confidence            46666666 888864  3589999999999999999999999999999999864210                     01


Q ss_pred             eeeccccch--------hhHhh----------HHHHHHHHHHHc-CCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           72 RIGRHSRHL--------EDLLT----------MEEAVHAKLRKF-GLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        72 ~~~~~~~~~--------~~~~~----------~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      .+++.++..        .+.+.          ..+.+.++++.+ ++.+... .++.+||||||||++||++++.     
T Consensus        81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~il  159 (237)
T PRK11614         81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLL  159 (237)
T ss_pred             CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHh-CchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            133332210        11110          122345566666 4654333 4678999999999999998775     


Q ss_pred             -------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                             +||+.+...+.+.++++   +.|||++|||+++
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  199 (237)
T PRK11614        160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQ  199 (237)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence                   69999999998887654   5799999999753

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.95  E-value=4.3e-27  Score=170.88  Aligned_cols=134  Identities=22%  Similarity=0.311  Sum_probs=90.2

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHH
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLR   95 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~   95 (158)
                      +.++ +++|+....++++++||++++||+++|+||||||||||+++|++..... ..+-.........   ....+   .
T Consensus         3 ~~~~-~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~---~~~~~---~   75 (178)
T cd03247           3 INNV-SFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL---EKALS---S   75 (178)
T ss_pred             EEEE-EEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH---HHHHH---h
Confidence            3444 8888754335899999999999999999999999999999999864321 1111111111000   00001   1


Q ss_pred             HcCCCC--------CCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEee
Q 044538           96 KFGLPG--------HNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSH  153 (158)
Q Consensus        96 ~~~l~~--------~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtH  153 (158)
                      .+++-.        ...+..+.+|||||+||++||++++.            +||+.+...+.+.+++.  +.|+|++||
T Consensus        76 ~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh  155 (178)
T cd03247          76 LISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH  155 (178)
T ss_pred             hEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence            111100        00000157899999999999998775            69999999999988765  479999999


Q ss_pred             cCCC
Q 044538          154 DSRL  157 (158)
Q Consensus       154 d~~~  157 (158)
                      |.++
T Consensus       156 ~~~~  159 (178)
T cd03247         156 HLTG  159 (178)
T ss_pred             CHHH
Confidence            9764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.6e-27  Score=179.71  Aligned_cols=143  Identities=21%  Similarity=0.291  Sum_probs=103.2

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------   71 (158)
                      +|++.+.++ ++.|+.  ..+|+++||+|++||+++|+||||||||||+++|++...        ..+            
T Consensus         2 ~~~l~~~~l-~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~   78 (251)
T PRK14270          2 KIKMESKNL-NLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV   78 (251)
T ss_pred             ccEEEEEEe-EEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence            356776666 888864  358999999999999999999999999999999997531        111            


Q ss_pred             -------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHH
Q 044538           72 -------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMF  121 (158)
Q Consensus        72 -------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~i  121 (158)
                             .+++.++..       .+.+.             ..+++.++++.+++.+.   ...+++.+||||||||++|
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  158 (251)
T PRK14270         79 DVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCI  158 (251)
T ss_pred             cHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence                   122222211       01110             01234567888887421   1235678999999999999


Q ss_pred             HHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          122 TLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       122 a~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      |++++.            +||+.+...+.+.++++  +.|+|++|||+++
T Consensus       159 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~  208 (251)
T PRK14270        159 ARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQ  208 (251)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHH
Confidence            988764            69999999999988765  3699999999764

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.95  E-value=1.4e-27  Score=181.79  Aligned_cols=133  Identities=20%  Similarity=0.362  Sum_probs=97.0

Q ss_pred             EEcCCCCCcceeeeeEEee-----CCCEEEEECCCCCCcchHHHHHHhhhhcc---e-----eeeccccch--------h
Q 044538           23 FSYPNLQDIRLSNVDMGID-----MGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L-----RIGRHSRHL--------E   81 (158)
Q Consensus        23 ~~~~~~~~~~l~~isl~i~-----~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~-----~~~~~~~~~--------~   81 (158)
                      |+|++..+ .+++++|++.     +|++++|+||||||||||+++|++.....   +     .+++.++..        .
T Consensus         1 ~~y~~~~~-~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~   79 (246)
T cd03237           1 YTYPTMKK-TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVR   79 (246)
T ss_pred             CCCccccc-ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHH
Confidence            35665443 6788888886     79999999999999999999999753211   1     344443321        1


Q ss_pred             hHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHH
Q 044538           82 DLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL  141 (158)
Q Consensus        82 ~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l  141 (158)
                      +.+.        ......++++.+++....+ +++.+||||||||++||++++.            +||+.++..+.+.+
T Consensus        80 e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l  158 (246)
T cd03237          80 DLLSSITKDFYTHPYFKTEIAKPLQIEQILD-REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI  158 (246)
T ss_pred             HHHHHHhhhccccHHHHHHHHHHcCCHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            1111        0123456788899976544 5679999999999999988775            69999999998888


Q ss_pred             hhc----CCeEEEEeecCCC
Q 044538          142 DEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       142 ~~~----~~tvi~vtHd~~~  157 (158)
                      +++    +.|||+||||+++
T Consensus       159 ~~~~~~~~~tiiivsHd~~~  178 (246)
T cd03237         159 RRFAENNEKTAFVVEHDIIM  178 (246)
T ss_pred             HHHHHhcCCEEEEEeCCHHH
Confidence            765    5799999999754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.95  E-value=3.8e-27  Score=181.72  Aligned_cols=139  Identities=23%  Similarity=0.259  Sum_probs=102.7

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-----------ee-----------
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-----------LR-----------   72 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-----------~~-----------   72 (158)
                      +.+.++ ++.|++.  .+|+++||+|.+|++++|+||||||||||+++|++.....           +.           
T Consensus         2 l~~~nl-~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~   78 (272)
T PRK13547          2 LTADHL-HVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA   78 (272)
T ss_pred             eEEEEE-EEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence            455565 8888653  5899999999999999999999999999999999753211           11           


Q ss_pred             ------eeccccch--------hhHhh----------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538           73 ------IGRHSRHL--------EDLLT----------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        73 ------~~~~~~~~--------~~~~~----------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia  122 (158)
                            +++.++..        .+.+.                ..+.+.++++.+++..... +++.+|||||+|||+||
T Consensus        79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la  157 (272)
T PRK13547         79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG-RDVTTLSGGELARVQFA  157 (272)
T ss_pred             HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHH
Confidence                  12222210        01000                1134567888999976554 56799999999999999


Q ss_pred             HHHh---------h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          123 LVSM---------Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l---------~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ++++         .            +||+.+...+.+.++++    +.|||+||||+++
T Consensus       158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~  217 (272)
T PRK13547        158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL  217 (272)
T ss_pred             HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            9988         2            59999999999888654    5799999999753

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.7e-27  Score=178.64  Aligned_cols=140  Identities=21%  Similarity=0.262  Sum_probs=101.9

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------cce-----------------
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------QKL-----------------   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------~~~-----------------   71 (158)
                      +.+.++ ++.|+.  ..+|+|+||++.+|++++|+||||||||||+++|++...      ..+                 
T Consensus         3 ~~~~~l-~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~   79 (246)
T PRK14269          3 AKTTNL-NLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK   79 (246)
T ss_pred             eeeeee-EEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence            344555 888874  358999999999999999999999999999999997531      100                 


Q ss_pred             eeeccccch-------hhHh--------------hHHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHHHHhh
Q 044538           72 RIGRHSRHL-------EDLL--------------TMEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTLVSMY  127 (158)
Q Consensus        72 ~~~~~~~~~-------~~~~--------------~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~~~l~  127 (158)
                      .+++.++..       .+.+              ...+++.++++.+++.+.   ..++++.+|||||+||++||++++.
T Consensus        80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  159 (246)
T PRK14269         80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI  159 (246)
T ss_pred             hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            133333221       1111              011245678899998531   1234668999999999999998775


Q ss_pred             ------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                                  +||+.+...+.+.+.++  +.|+|++|||+++
T Consensus       160 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~  203 (246)
T PRK14269        160 KPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ  203 (246)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence                        69999999999888764  5799999999763

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=4.4e-27  Score=172.02  Aligned_cols=139  Identities=24%  Similarity=0.325  Sum_probs=99.1

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---eeee-----------------
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LRIG-----------------   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~~~-----------------   74 (158)
                      +...|+ +++..++  .+++++||++.+||+.+|+||||||||||++.++|.....   ..++                 
T Consensus         2 i~a~nl-s~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra   78 (259)
T COG4559           2 IRAENL-SYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA   78 (259)
T ss_pred             eeeeee-EEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence            444455 6665543  4799999999999999999999999999999999743211   0000                 


Q ss_pred             ccccc--------hhhH------------h--hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           75 RHSRH--------LEDL------------L--TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        75 ~~~~~--------~~~~------------~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      ..+|+        ..+.            .  ...+.+++++...++..... +-+.+|||||||||.+||.+..     
T Consensus        79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-R~y~~LSGGEqQRVqlARvLaQl~~~v  157 (259)
T COG4559          79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-RDYRTLSGGEQQRVQLARVLAQLWPPV  157 (259)
T ss_pred             hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-cchhhcCchHHHHHHHHHHHHHccCCC
Confidence            01110        0010            0  11233678899999987765 4457999999999999887653     


Q ss_pred             -------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 -------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                                   .||..-+..++++.+++   +..|+.|-||+++
T Consensus       158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL  203 (259)
T COG4559         158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL  203 (259)
T ss_pred             CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH
Confidence                         58888888777777766   4689999999986

>PRK13409 putative ATPase RIL; Provisional

Probab=99.94  E-value=2.3e-27  Score=199.49  Aligned_cols=141  Identities=24%  Similarity=0.342  Sum_probs=107.7

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----eeeeccccchh---
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K----LRIGRHSRHLE---   81 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~----~~~~~~~~~~~---   81 (158)
                      .+++.+.++ ++.|++.   .|+++||+|.+||+++|+||||||||||+++|++....   .    ..+++.+|...   
T Consensus       338 ~~~l~~~~l-s~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~  413 (590)
T PRK13409        338 ETLVEYPDL-TKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDY  413 (590)
T ss_pred             ceEEEEcce-EEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCC
Confidence            356777666 8888642   48999999999999999999999999999999975431   1    23455544321   


Q ss_pred             -----hHhh-------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538           82 -----DLLT-------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV  137 (158)
Q Consensus        82 -----~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l  137 (158)
                           +.+.       ....+.++++.+++.+.. ++++.+|||||||||+||++++.            +||+.++..+
T Consensus       414 ~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l  492 (590)
T PRK13409        414 DGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAV  492 (590)
T ss_pred             CCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence                 1111       112456788999997644 46789999999999999988764            7999999999


Q ss_pred             HHHHhhc----CCeEEEEeecCCC
Q 044538          138 AVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       138 ~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .+.++++    +.|+|+||||+++
T Consensus       493 ~~~l~~l~~~~g~tviivsHD~~~  516 (590)
T PRK13409        493 AKAIRRIAEEREATALVVDHDIYM  516 (590)
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHH
Confidence            9988765    5799999999764

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.94  E-value=4.9e-27  Score=195.60  Aligned_cols=139  Identities=31%  Similarity=0.419  Sum_probs=102.9

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce----------------eeec
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL----------------RIGR   75 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~----------------~~~~   75 (158)
                      +.+.++ +|+|++.. ++|+|+||++++|+.++|+||||||||||++++++...+   .+                .+++
T Consensus       335 I~~~~v-sf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~  412 (529)
T TIGR02868       335 LELRDL-SFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISV  412 (529)
T ss_pred             EEEEEE-EEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEE
Confidence            556665 99997643 589999999999999999999999999999999864321   11                2445


Q ss_pred             cccch-------hhHhh------HHHHHHHHHHHcCCCCCCC------CC----CCCCCChHHHHHHHHHHHHhh-----
Q 044538           76 HSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNH------LT----PIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        76 ~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~------~~----~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      .+|..       .++..      .++++.++++..++++...      +.    ....||||||||++||||++.     
T Consensus       413 V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il  492 (529)
T TIGR02868       413 FAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL  492 (529)
T ss_pred             EccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            44432       11111      2356777787777643211      11    235799999999999999875     


Q ss_pred             -------CCCHHHHHHHHHHHhhc--CCeEEEEeecC
Q 044538          128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDS  155 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~  155 (158)
                             +||+++...+.+.+.+.  +.|+|+|||++
T Consensus       493 iLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       493 LLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence                   69999999999999876  47999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6e-27  Score=183.30  Aligned_cols=143  Identities=23%  Similarity=0.291  Sum_probs=103.5

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cc-------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QK-------------   70 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~-------------   70 (158)
                      ++++.+.++ ++.|+..  .+|+++||+|.+|++++|+||||||||||+++|++...        ..             
T Consensus        43 ~~~l~i~nl-~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~  119 (305)
T PRK14264         43 DAKLSVEDL-DVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV  119 (305)
T ss_pred             CceEEEEEE-EEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            346676666 8888753  58999999999999999999999999999999997632        10             


Q ss_pred             ------eeeeccccchh-------hHhh-------------------------HHHHHHHHHHHcCCCC---CCCCCCCC
Q 044538           71 ------LRIGRHSRHLE-------DLLT-------------------------MEEAVHAKLRKFGLPG---HNHLTPIA  109 (158)
Q Consensus        71 ------~~~~~~~~~~~-------~~~~-------------------------~~~~~~~~l~~~~l~~---~~~~~~~~  109 (158)
                            ..+++.++...       +.+.                         ..+.+.++++.+++..   ....+++.
T Consensus       120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  199 (305)
T PRK14264        120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL  199 (305)
T ss_pred             cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence                  01233332210       0000                         0233556777787742   11234668


Q ss_pred             CCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          110 NLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       110 ~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      +|||||+||++||++++.            +||+.+...+.+.|+++  +.|||++|||+++
T Consensus       200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~  261 (305)
T PRK14264        200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQ  261 (305)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence            999999999999998775            69999999999999876  3699999999754

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.4e-27  Score=190.72  Aligned_cols=143  Identities=31%  Similarity=0.388  Sum_probs=107.0

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---cee-----------------e
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR-----------------I   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~-----------------~   73 (158)
                      .+++.++ +|+|++.+.++|+|+||++.+||.++|+|++|||||||+.++.+....   .+.                 +
T Consensus       336 ~l~~~~v-sF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i  414 (573)
T COG4987         336 ALELRNV-SFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETI  414 (573)
T ss_pred             eeeeccc-eeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHH
Confidence            4566666 999999887899999999999999999999999999999999853221   111                 1


Q ss_pred             eccccc--h-----hhHhh------HHHHHHHHHHHcCCCCCCCCC----------CCCCCChHHHHHHHHHHHHhh---
Q 044538           74 GRHSRH--L-----EDLLT------MEEAVHAKLRKFGLPGHNHLT----------PIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        74 ~~~~~~--~-----~~~~~------~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      +...|.  +     .+++.      .++++.++++++|+.+.....          -...|||||+||++|||+++.   
T Consensus       415 ~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dap  494 (573)
T COG4987         415 SVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP  494 (573)
T ss_pred             hhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCC
Confidence            111111  0     11111      146788889998886533322          235899999999999999886   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||+.+..++++.+.+.  ++|+|+|||++..
T Consensus       495 l~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~  535 (573)
T COG4987         495 LWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRG  535 (573)
T ss_pred             eEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEeccccc
Confidence                     69999999999999765  4799999999753

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.94  E-value=4.8e-27  Score=187.23  Aligned_cols=131  Identities=24%  Similarity=0.249  Sum_probs=97.9

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeeeccc
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIGRHS   77 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~~~~   77 (158)
                      +++|++.   .+ ++||++++|++++|+||||||||||+++|++....                        +..+++.+
T Consensus         6 ~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~   81 (354)
T TIGR02142         6 SKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF   81 (354)
T ss_pred             EEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence            7788642   25 99999999999999999999999999999964211                        01133333


Q ss_pred             cch--------hhHhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538           78 RHL--------EDLLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------  127 (158)
Q Consensus        78 ~~~--------~~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------  127 (158)
                      +..        .+.+.          ..+++.++++.+++.+..+ +++.+||||||||++||++++.            
T Consensus        82 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts  160 (354)
T TIGR02142        82 QEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLA  160 (354)
T ss_pred             cCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence            221        11111          1234678899999986554 5679999999999999998775            


Q ss_pred             CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +||+.++..+.+.++++    +.|+|+||||+++
T Consensus       161 ~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~  194 (354)
T TIGR02142       161 ALDDPRKYEILPYLERLHAEFGIPILYVSHSLQE  194 (354)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            69999999988888654    5799999999754

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.94  E-value=7.6e-27  Score=172.86  Aligned_cols=139  Identities=24%  Similarity=0.283  Sum_probs=94.4

Q ss_pred             hheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e----eeeccccchh-----
Q 044538           17 LIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L----RIGRHSRHLE-----   81 (158)
Q Consensus        17 ~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~----~~~~~~~~~~-----   81 (158)
                      +.++ ++.|++..   .++++++||+|++|++++|+||||||||||+++|++.....   +    .+++.++...     
T Consensus         3 ~~~l-~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t   81 (204)
T cd03250           3 VEDA-SFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGT   81 (204)
T ss_pred             EeEE-EEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCc
Confidence            4455 88887542   35899999999999999999999999999999999754321   1    2444433310     


Q ss_pred             --hHhh-----HHHHHHHHHHHcCC-----------CCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538           82 --DLLT-----MEEAVHAKLRKFGL-----------PGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT  131 (158)
Q Consensus        82 --~~~~-----~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~  131 (158)
                        +.+.     ..+...+.++.+++           ..... +++.+||+|||||++||++++.            +||+
T Consensus        82 ~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~  160 (204)
T cd03250          82 IRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA  160 (204)
T ss_pred             HHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence              1110     01222333333332           22222 3568999999999999988775            6999


Q ss_pred             HHHHHHHH-HHhhc---CCeEEEEeecCCC
Q 044538          132 QSIVAVAV-TLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       132 ~~~~~l~~-~l~~~---~~tvi~vtHd~~~  157 (158)
                      .+...+.+ .+++.   +.|||++||+.+.
T Consensus       161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~  190 (204)
T cd03250         161 HVGRHIFENCILGLLLNNKTRILVTHQLQL  190 (204)
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEEeCCHHH
Confidence            99888877 44432   4799999999754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.94  E-value=3.6e-27  Score=200.57  Aligned_cols=142  Identities=24%  Similarity=0.303  Sum_probs=105.2

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~   74 (158)
                      +.+.++ +|+|+....++|+|+||+|++||++||+|+||||||||+|++++...+                    +..+|
T Consensus       472 I~~~nv-sf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig  550 (709)
T COG2274         472 IEFENV-SFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG  550 (709)
T ss_pred             EEEEEE-EEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence            566676 999988766799999999999999999999999999999999964321                    11244


Q ss_pred             ccccch-------hhHhh------HHHHHHHHHHHcCCCCCCCC----------CCCCCCChHHHHHHHHHHHHhh----
Q 044538           75 RHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNHL----------TPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      ++.|+.       .++.+      ..+++.+++...|..+....          .....||||||||++|||+++.    
T Consensus       551 ~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I  630 (709)
T COG2274         551 YVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI  630 (709)
T ss_pred             EEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE
Confidence            444431       11111      12455555555544322111          1236899999999999999775    


Q ss_pred             --------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                              +||+++.+.+.+.|.+..  .|+|+|||+...
T Consensus       631 LlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~t  670 (709)
T COG2274         631 LLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLST  670 (709)
T ss_pred             EEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchH
Confidence                    799999999999999886  899999998753

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5.9e-27  Score=179.93  Aligned_cols=144  Identities=24%  Similarity=0.329  Sum_probs=102.7

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce-----------
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL-----------   71 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~-----------   71 (158)
                      ..|++.+.++ ++.|+..  ++|+|+||+|++||+++|+||||||||||+++|++...        ..+           
T Consensus         7 ~~~~l~i~~v-~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   83 (264)
T PRK14243          7 TETVLRTENL-NVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD   83 (264)
T ss_pred             CceEEEEeee-EEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence            3467777776 8888653  58999999999999999999999999999999996421        110           


Q ss_pred             --------eeeccccch-------hhHhh-----------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHH
Q 044538           72 --------RIGRHSRHL-------EDLLT-----------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        72 --------~~~~~~~~~-------~~~~~-----------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia  122 (158)
                              .+++.++..       .+.+.           ..+++.++++.+++..   ....+++.+|||||+||++||
T Consensus        84 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la  163 (264)
T PRK14243         84 VDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA  163 (264)
T ss_pred             cChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence                    123222211       01110           1123444566667632   112346789999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.++..+.+.+.++.  .|||++|||+++
T Consensus       164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~  212 (264)
T PRK14243        164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQ  212 (264)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            98875            699999999999887653  699999999764

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.94  E-value=6.6e-27  Score=176.42  Aligned_cols=137  Identities=26%  Similarity=0.339  Sum_probs=101.9

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR   78 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~   78 (158)
                      +.++ ++.|+..  .+++++||++.+|++++|+||||||||||+++|++....                  +..+++.++
T Consensus         3 ~~~l-~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (232)
T cd03300           3 LENV-SKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ   79 (232)
T ss_pred             EEeE-EEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence            3444 8888653  589999999999999999999999999999999964321                  011233222


Q ss_pred             ch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           79 HL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        79 ~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      ..        .+.+.            ..+.+..+++.+++.+... +.+.+||+||+||++||++++.           
T Consensus        80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrl~laral~~~p~llllDEP~  158 (232)
T cd03300          80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL  158 (232)
T ss_pred             ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            11        11111            1235667889999976554 5668999999999999998775           


Q ss_pred             -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                       +||+.++..+.+.++++    +.|||++|||+++
T Consensus       159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~  193 (232)
T cd03300         159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE  193 (232)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence             69999999999888664    5799999999764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.8e-27  Score=178.30  Aligned_cols=140  Identities=21%  Similarity=0.348  Sum_probs=101.4

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce---------------
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL---------------   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~---------------   71 (158)
                      +.+.++ ++.|+.  ..+|+|+||+|++||+++|+||||||||||+++|++...        ..+               
T Consensus         5 l~~~nl-~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~   81 (252)
T PRK14256          5 VKLEQL-NVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV   81 (252)
T ss_pred             EEEEEE-EEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence            455555 888864  358999999999999999999999999999999998632        100               


Q ss_pred             ----eeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHH
Q 044538           72 ----RIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTL  123 (158)
Q Consensus        72 ----~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~  123 (158)
                          .+++.++..        .+.+.             ..+++.++++.+++...   ....++.+||||||||++||+
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar  161 (252)
T PRK14256         82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR  161 (252)
T ss_pred             HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence                122222210        01110             11345667788887531   122467899999999999998


Q ss_pred             HHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          124 VSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       124 ~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      +++.            +||+.++..+.+.++++  +.|||++|||+++
T Consensus       162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~  209 (252)
T PRK14256        162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ  209 (252)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHH
Confidence            8764            69999999999988776  4699999999754

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.94  E-value=3.9e-27  Score=177.49  Aligned_cols=126  Identities=25%  Similarity=0.330  Sum_probs=93.0

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----c-----------------eeeeccccch----hhHhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----K-----------------LRIGRHSRHL----EDLLT   85 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----~-----------------~~~~~~~~~~----~~~~~   85 (158)
                      +++|+||+|++|++++|+||||||||||+++|++....     .                 ..+++.++..    .+..+
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t   80 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT   80 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence            47899999999999999999999999999999975432     1                 1233333221    00000


Q ss_pred             ------------------HHHHHHHHHHHcCCCC--CCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHH
Q 044538           86 ------------------MEEAVHAKLRKFGLPG--HNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQS  133 (158)
Q Consensus        86 ------------------~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~  133 (158)
                                        ..+++.++++.+++..  ...++++.+|||||||||+||++++.            +||+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~  160 (230)
T TIGR02770        81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN  160 (230)
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence                              1234667889999973  12235678999999999999988775            699999


Q ss_pred             HHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          134 IVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       134 ~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ...+.+.+++.    +.|||++|||+++
T Consensus       161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~  188 (230)
T TIGR02770       161 QARVLKLLRELRQLFGTGILLITHDLGV  188 (230)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            99888888653    4699999999753

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.94  E-value=9.7e-27  Score=175.47  Aligned_cols=139  Identities=27%  Similarity=0.389  Sum_probs=96.4

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeecc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGRH   76 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~~   76 (158)
                      +.++ ++.|++....+++++||++++|++++|+||||||||||+++|++....                    +..+++.
T Consensus         3 ~~~l-~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~   81 (234)
T cd03251           3 FKNV-TFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLV   81 (234)
T ss_pred             EEEE-EEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEe
Confidence            3444 888865433589999999999999999999999999999999864211                    0113332


Q ss_pred             ccch-------hhHhh------HHHH---------HHHHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           77 SRHL-------EDLLT------MEEA---------VHAKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        77 ~~~~-------~~~~~------~~~~---------~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      ++..       .+.+.      ..+.         +.+.++.+  ++..... .++.+||||||||++||++++.     
T Consensus        82 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~ll  160 (234)
T cd03251          82 SQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIG-ERGVKLSGGQRQRIAIARALLKDPPIL  160 (234)
T ss_pred             CCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeec-cCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            2210       11110      0011         22333444  4444333 4578999999999999998775     


Q ss_pred             -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                             +||+.+...+.+.+++.  +.|||++|||+++
T Consensus       161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~  199 (234)
T cd03251         161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLST  199 (234)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence                   69999999999988765  4699999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.94  E-value=4.5e-27  Score=201.75  Aligned_cols=143  Identities=22%  Similarity=0.285  Sum_probs=105.6

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+++.++ +|+|+...+++|+|+||+|++||.++|+||||||||||+++|++...+                    +..+
T Consensus       477 ~I~~~~v-sf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  555 (710)
T TIGR03796       477 YVELRNI-TFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV  555 (710)
T ss_pred             eEEEEEE-EEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence            3556666 999986555789999999999999999999999999999999864321                    1124


Q ss_pred             eccccch-------hhHhh------HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh---
Q 044538           74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      ++.+|+.       .++..      .++++.++++..++.+...      +    .....||||||||++|||+++.   
T Consensus       556 ~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~  635 (710)
T TIGR03796       556 AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS  635 (710)
T ss_pred             eEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence            4444431       11111      1355666676666543111      0    1236799999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                               +||+.+...+.+.+++.+.|+|+|||+++.
T Consensus       636 iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~  674 (710)
T TIGR03796       636 ILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLST  674 (710)
T ss_pred             EEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                     699999999999998878899999999753

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=8e-27  Score=179.89  Aligned_cols=143  Identities=23%  Similarity=0.310  Sum_probs=103.4

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cc-------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QK-------------   70 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~-------------   70 (158)
                      .+++.+.++ ++.|++.  .+|+++||+|++|++++|+||||||||||+++|++...        ..             
T Consensus        23 ~~~l~~~nl-~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~   99 (272)
T PRK14236         23 QTALEVRNL-NLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV   99 (272)
T ss_pred             CcEEEEEEE-EEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence            457777676 8988643  58999999999999999999999999999999987632        10             


Q ss_pred             ------eeeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHH
Q 044538           71 ------LRIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMF  121 (158)
Q Consensus        71 ------~~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~i  121 (158)
                            ..+++.++..       .+.+.             ..+.+.++++.+++...   ...+++.+|||||+||++|
T Consensus       100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l  179 (272)
T PRK14236        100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI  179 (272)
T ss_pred             CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence                  0122222210       01110             01235566777887531   1234668999999999999


Q ss_pred             HHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          122 TLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       122 a~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      |++++.            +||+.++..+.+.++++  +.|+|++|||+++
T Consensus       180 aral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~  229 (272)
T PRK14236        180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQ  229 (272)
T ss_pred             HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHH
Confidence            998775            69999999999988765  3699999999754

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.94  E-value=5.9e-27  Score=192.53  Aligned_cols=144  Identities=21%  Similarity=0.285  Sum_probs=105.8

Q ss_pred             chhhhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---cee-------eec----c
Q 044538           12 SPMLQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR-------IGR----H   76 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~-------~~~----~   76 (158)
                      .+|+.+.++ ++.|+.+. .++|+++||+|++|++++|+||||||||||+++|+|...+   .+.       ++.    .
T Consensus        19 ~~mL~lknL-~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~   97 (549)
T PRK13545         19 KPFDKLKDL-FFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLN   97 (549)
T ss_pred             cceeEEEEE-EEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccC
Confidence            457777776 88887642 3589999999999999999999999999999999976421   111       111    0


Q ss_pred             cc-chhhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538           77 SR-HLEDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT  131 (158)
Q Consensus        77 ~~-~~~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~  131 (158)
                      .. ...+.+            ...+.+.++++.+++.+... +++.+||||||||++||++++.            +||+
T Consensus        98 ~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~  176 (549)
T PRK13545         98 GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ  176 (549)
T ss_pred             CCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence            00 011110            01233556788899976544 5679999999999999988775            6999


Q ss_pred             HHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          132 QSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       132 ~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      .++..+.+.++++   +.|||++|||+++
T Consensus       177 ~sr~~LlelL~el~~~G~TIIIVSHdl~~  205 (549)
T PRK13545        177 TFTKKCLDKMNEFKEQGKTIFFISHSLSQ  205 (549)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            9999998888665   5799999999754

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=7.2e-27  Score=178.24  Aligned_cols=143  Identities=20%  Similarity=0.286  Sum_probs=102.3

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------   71 (158)
                      .+++.+.++ ++.|++.  .+|+|+||+|++||+++|+||||||||||+++|++...        ..+            
T Consensus         4 ~~~i~~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   80 (253)
T PRK14261          4 EIILSTKNL-NLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA   80 (253)
T ss_pred             cceEEEeee-EEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence            457777666 8888643  58999999999999999999999999999999986421        100            


Q ss_pred             -------eeeccccch--h-----hHh-------------hHHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHH
Q 044538           72 -------RIGRHSRHL--E-----DLL-------------TMEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMF  121 (158)
Q Consensus        72 -------~~~~~~~~~--~-----~~~-------------~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~i  121 (158)
                             .+++.++..  .     +.+             ...+.+.++++.+++.+.   ..++++.+||||||||++|
T Consensus        81 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l  160 (253)
T PRK14261         81 DVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCI  160 (253)
T ss_pred             chhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHH
Confidence                   123322221  0     000             012235566777777421   1235678999999999999


Q ss_pred             HHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          122 TLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       122 a~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      |++++.            +||+.++..+.+.++++  +.|||++|||+++
T Consensus       161 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~  210 (253)
T PRK14261        161 ARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQ  210 (253)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHH
Confidence            998775            69999999998888765  3699999999753

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=3.8e-27  Score=167.06  Aligned_cols=135  Identities=24%  Similarity=0.381  Sum_probs=100.2

Q ss_pred             EEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeeccccc---
Q 044538           23 FSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGRHSRH---   79 (158)
Q Consensus        23 ~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~~~~~---   79 (158)
                      +.|.....++|+++||++.+||+++|+||||||||||+++++.....                    +.+++|..|.   
T Consensus         9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL   88 (223)
T COG4619           9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL   88 (223)
T ss_pred             HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence            35555555789999999999999999999999999999999843211                    1112222111   


Q ss_pred             ----hhhHh----------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHH
Q 044538           80 ----LEDLL----------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQS  133 (158)
Q Consensus        80 ----~~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~  133 (158)
                          ..+++          .....+...+++|++++....+++.+|||||+||++|+|-+..            .||+.+
T Consensus        89 fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~n  168 (223)
T COG4619          89 FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN  168 (223)
T ss_pred             cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhh
Confidence                11111          1235677899999999877778899999999999999876543            699999


Q ss_pred             HHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          134 IVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       134 ~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ...+.+++.++    ..++++||||.+.
T Consensus       169 kr~ie~mi~~~v~~q~vAv~WiTHd~dq  196 (223)
T COG4619         169 KRNIEEMIHRYVREQNVAVLWITHDKDQ  196 (223)
T ss_pred             HHHHHHHHHHHhhhhceEEEEEecChHH
Confidence            98888877654    4689999999753

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.94  E-value=6.3e-27  Score=187.53  Aligned_cols=127  Identities=22%  Similarity=0.275  Sum_probs=96.6

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------------ceeeeccccch-
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------------KLRIGRHSRHL-   80 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------------~~~~~~~~~~~-   80 (158)
                      ..+++|+||+|++||+++|+||||||||||+++|++....                            +..+++.+|.+ 
T Consensus        37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~  116 (382)
T TIGR03415        37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA  116 (382)
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence            3579999999999999999999999999999999853210                            01244433321 


Q ss_pred             -------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CC
Q 044538           81 -------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HL  129 (158)
Q Consensus        81 -------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~l  129 (158)
                             .+..            ...+++.++++.+|+.+..+ +++.+||||||||++||++++.            +|
T Consensus       117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L  195 (382)
T TIGR03415       117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL  195 (382)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence                   1111            01245678899999987554 5678999999999999998775            69


Q ss_pred             CHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          130 DTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       130 D~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      |+..+..+.+.+.++    +.|||+||||+++
T Consensus       196 D~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e  227 (382)
T TIGR03415       196 DPLIRTQLQDELLELQAKLNKTIIFVSHDLDE  227 (382)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            999999998888653    5799999999864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.94  E-value=7.1e-27  Score=193.20  Aligned_cols=133  Identities=22%  Similarity=0.258  Sum_probs=100.5

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccch
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRHL   80 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~~   80 (158)
                      ++.|++  .++|+|+||+|++||+++|+||||||||||+++|++....                     +..+++.++..
T Consensus         5 ~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   82 (491)
T PRK10982          5 SKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQEL   82 (491)
T ss_pred             EEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccc
Confidence            788864  3589999999999999999999999999999999864210                     01233333321


Q ss_pred             --------hhHh---------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538           81 --------EDLL---------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------  127 (158)
Q Consensus        81 --------~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------  127 (158)
                              .+.+               ...+++.++++.+++....+ +++.+|||||||||+||++++.          
T Consensus        83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lA~al~~~p~lllLDEP  161 (491)
T PRK10982         83 NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR-AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEP  161 (491)
T ss_pred             ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCcc-CchhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence                    0000               01235677889999976544 5679999999999999998774          


Q ss_pred             --CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 --HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                        +||+.+...+.+.++++   +.|||++|||+++
T Consensus       162 t~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~  196 (491)
T PRK10982        162 TSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE  196 (491)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence              79999999998888664   5799999999764

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=7.2e-27  Score=178.89  Aligned_cols=141  Identities=21%  Similarity=0.304  Sum_probs=101.5

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce--------------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL--------------   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~--------------   71 (158)
                      ++.+.++ ++.|+.  ..+++++||++.+||+++|+|+||||||||+++|++...        ..+              
T Consensus         7 ~l~~~~l-~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (259)
T PRK14260          7 AIKVKDL-SFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI   83 (259)
T ss_pred             eEEEEEE-EEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence            5666666 888864  358999999999999999999999999999999997532        100              


Q ss_pred             -----eeeccccch-------hhHh-------------hHHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHHH
Q 044538           72 -----RIGRHSRHL-------EDLL-------------TMEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFTL  123 (158)
Q Consensus        72 -----~~~~~~~~~-------~~~~-------------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia~  123 (158)
                           .+++.++..       .+.+             ...+.+.++++.+++..   ...++++.+|||||+||++||+
T Consensus        84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar  163 (259)
T PRK14260         84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIAR  163 (259)
T ss_pred             HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence                 122222211       0111             01133456777788732   1223567899999999999999


Q ss_pred             HHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          124 VSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       124 ~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      +++.            +||+.+...+.+.++++.  .|||++|||+++
T Consensus       164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~  211 (259)
T PRK14260        164 ALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQ  211 (259)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            8774            699999999999887653  699999999864

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.2e-26  Score=183.24  Aligned_cols=144  Identities=21%  Similarity=0.264  Sum_probs=103.6

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cc--------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QK--------------   70 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~--------------   70 (158)
                      +++.+.++ +++|.....++|+++||+|++|++++|+||||||||||+++|++...        ..              
T Consensus        79 ~~i~~~nl-s~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~  157 (329)
T PRK14257         79 NVFEIRNF-NFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS  157 (329)
T ss_pred             ceEEEEee-EEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            36666666 99997544568999999999999999999999999999999986531        11              


Q ss_pred             -----eeeeccccch-------hhHhh---------HH----HHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHH
Q 044538           71 -----LRIGRHSRHL-------EDLLT---------ME----EAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        71 -----~~~~~~~~~~-------~~~~~---------~~----~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia  122 (158)
                           ..+++.++..       .+.+.         ..    +.+..+++.+++...   ....++.+||||||||++||
T Consensus       158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA  237 (329)
T PRK14257        158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA  237 (329)
T ss_pred             hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence                 1133333221       01111         01    124556778776421   12246689999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      ||++.            +||+.+...+.+.+++..  .|+|+|||++++
T Consensus       238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~  286 (329)
T PRK14257        238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQ  286 (329)
T ss_pred             HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            99875            699999999888887654  799999999864

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.7e-27  Score=177.97  Aligned_cols=141  Identities=22%  Similarity=0.318  Sum_probs=100.3

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce--------------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL--------------   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~--------------   71 (158)
                      ++.+.++ ++.|+.  +.+++++||+|.+|++++|+||||||||||+++|++....        .+              
T Consensus         3 ~l~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   79 (249)
T PRK14253          3 KFNIENL-DLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA   79 (249)
T ss_pred             eEEEecc-EEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence            4555565 888874  3589999999999999999999999999999999875321        00              


Q ss_pred             ----eeeccccch--h-----hHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHHH
Q 044538           72 ----RIGRHSRHL--E-----DLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTLV  124 (158)
Q Consensus        72 ----~~~~~~~~~--~-----~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~~  124 (158)
                          .+++.++..  .     +.+.             ..+++.+.++.+++.+.   ..++++.+|||||+||++||++
T Consensus        80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  159 (249)
T PRK14253         80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART  159 (249)
T ss_pred             HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence                122222210  0     0000             01233456677776431   1235678999999999999998


Q ss_pred             Hhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          125 SMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       125 ~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      ++.            +||+.+...+.+.+++.  +.|||++|||+++
T Consensus       160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~  206 (249)
T PRK14253        160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQ  206 (249)
T ss_pred             HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence            774            69999999999988776  3699999999764

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.2e-26  Score=177.59  Aligned_cols=144  Identities=22%  Similarity=0.313  Sum_probs=105.1

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------   70 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------   70 (158)
                      ..|++.+.++ +++|++.  .+++|+||++.+|++++|+||||||||||+++|++.....                    
T Consensus         7 ~~~~i~~~~~-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~   83 (257)
T PRK14246          7 AEDVFNISRL-YLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI   83 (257)
T ss_pred             hhhheeeeeE-EEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC
Confidence            4577777777 8888753  5899999999999999999999999999999999643210                    


Q ss_pred             ------eeeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHH
Q 044538           71 ------LRIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVM  120 (158)
Q Consensus        71 ------~~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~  120 (158)
                            ..+++.++..        .+.+.             ..+.+.++++.+++..   ....+++..||+|||||++
T Consensus        84 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~  163 (257)
T PRK14246         84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLT  163 (257)
T ss_pred             CHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHH
Confidence                  0122222210        11110             0133566788888853   1223466899999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.+...+.+.+.++.  .|||++|||.++
T Consensus       164 laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~  214 (257)
T PRK14246        164 IARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQ  214 (257)
T ss_pred             HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHH
Confidence            9998875            699999999999887654  799999999754

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.94  E-value=1.2e-26  Score=175.64  Aligned_cols=137  Identities=26%  Similarity=0.372  Sum_probs=101.3

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR   78 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~   78 (158)
                      +.++ ++.|+..  .+|+++||++.+|++++|+||||||||||+++|++....                  +..+++.++
T Consensus         3 i~~l-~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q   79 (237)
T TIGR00968         3 IANI-SKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ   79 (237)
T ss_pred             EEEE-EEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence            3444 8888753  589999999999999999999999999999999964211                  011333222


Q ss_pred             ch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           79 HL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        79 ~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      ..        .+.+.            ..+.+.++++.+++....+ +++.+||+||+||++||++++.           
T Consensus        80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrl~laral~~~p~llllDEP~  158 (237)
T TIGR00968        80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-RYPNQLSGGQRQRVALARALAVEPQVLLLDEPF  158 (237)
T ss_pred             ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            11        01110            1234567888999975544 5668999999999999988775           


Q ss_pred             -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                       +||+.+...+.+.+.+.    +.|||++||++++
T Consensus       159 ~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~  193 (237)
T TIGR00968       159 GALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE  193 (237)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence             69999999999888764    5799999999753

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=8.1e-27  Score=177.73  Aligned_cols=141  Identities=23%  Similarity=0.370  Sum_probs=98.8

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce--------------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL--------------   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~--------------   71 (158)
                      ++.+.++ ++.|+.  ..+++++||+|.+|++++|+||||||||||+++|++...        ..+              
T Consensus         4 ~l~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   80 (252)
T PRK14272          4 LLSAQDV-NIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP   80 (252)
T ss_pred             EEEEeee-EEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence            4555555 888864  358999999999999999999999999999999997532        111              


Q ss_pred             -----eeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHH
Q 044538           72 -----RIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        72 -----~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia  122 (158)
                           .+++.++..        .+.+.             ..+.+.+.++.+++..   ...++++.+|||||+||++||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  160 (252)
T PRK14272         81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA  160 (252)
T ss_pred             HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence                 122222211        01110             0122333455565431   112356789999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.+...+.+.++++.  .|+|++|||.++
T Consensus       161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~  209 (252)
T PRK14272        161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQ  209 (252)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            88775            699999999999887764  799999999764

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.94  E-value=9.9e-27  Score=179.61  Aligned_cols=140  Identities=20%  Similarity=0.259  Sum_probs=102.8

Q ss_pred             hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeecc
Q 044538           16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRH   76 (158)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~   76 (158)
                      .+.++ +++|+.....+|+|+||+|++||+++|+||||||||||+++|++....                   +..+++.
T Consensus         4 ~~~nl-s~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v   82 (275)
T cd03289           4 TVKDL-TAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVI   82 (275)
T ss_pred             EEEEE-EEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEE
Confidence            44555 889964444689999999999999999999999999999999864211                   0123333


Q ss_pred             ccch-------hhHhh-----HHHHHHHHHHHcCCCCCCCCCCCCC-----------CChHHHHHHHHHHHHhh------
Q 044538           77 SRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNHLTPIAN-----------LSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        77 ~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkqrv~ia~~~l~------  127 (158)
                      ++..       .+.+.     ..+++.++++.+|+..... +.+..           ||||||||++||++++.      
T Consensus        83 ~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~-~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill  161 (275)
T cd03289          83 PQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIE-QFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL  161 (275)
T ss_pred             CCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHH-hCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            3321       11111     1345677888888875443 33343           99999999999999875      


Q ss_pred             ------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                            +||+.+...+.+.+++.  +.|||+||||+++
T Consensus       162 lDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~  199 (275)
T cd03289         162 LDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEA  199 (275)
T ss_pred             EECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHH
Confidence                  69999999999988764  4799999999764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=5.2e-28  Score=175.48  Aligned_cols=139  Identities=24%  Similarity=0.353  Sum_probs=102.7

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---------------------hcceee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---------------------RQKLRI   73 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---------------------~~~~~~   73 (158)
                      +.+.++ .++|..  +.+++++||+|++||+++|+|||||||||.+.++.|..                     +.+..+
T Consensus         5 L~a~~l-~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi   81 (243)
T COG1137           5 LVAENL-AKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI   81 (243)
T ss_pred             EEehhh-hHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence            445555 777764  35899999999999999999999999999998887431                     223456


Q ss_pred             eccccch--hhHhh--------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           74 GRHSRHL--EDLLT--------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        74 ~~~~~~~--~~~~~--------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      ||.+|..  +..++                    ..+++.++++.|.+.+..+ .+..+||||||+|+.||||+..    
T Consensus        82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~-~~a~sLSGGERRR~EIARaLa~~P~f  160 (243)
T COG1137          82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRD-SKAYSLSGGERRRVEIARALAANPKF  160 (243)
T ss_pred             ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhc-CcccccccchHHHHHHHHHHhcCCCE
Confidence            7776642  11111                    0134668899999987655 5778999999999999999775    


Q ss_pred             --------CCCHHHHHHHHHH---HhhcCCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVT---LDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~---l~~~~~tvi~vtHd~~~  157 (158)
                              +.||-+..++.++   |++.+.+|+++.|+.++
T Consensus       161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVRE  201 (243)
T COG1137         161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRE  201 (243)
T ss_pred             EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHH
Confidence                    5788776655554   55567899999999653

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.2e-26  Score=176.89  Aligned_cols=142  Identities=27%  Similarity=0.363  Sum_probs=100.8

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce-------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL-------------   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~-------------   71 (158)
                      +++.+.++ ++.|+.  ..+++++||+|.+|++++|+||||||||||+++|++....        .+             
T Consensus         3 ~~l~~~~l-~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~   79 (251)
T PRK14249          3 PKIKIRGV-NFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD   79 (251)
T ss_pred             ceEEEEEE-EEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence            45666665 888864  3589999999999999999999999999999999975321        11             


Q ss_pred             ------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHH
Q 044538           72 ------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        72 ------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia  122 (158)
                            .+++.++..       .+.+.             ..+.+.++++.+++...   ...+++.+|||||+||++||
T Consensus        80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la  159 (251)
T PRK14249         80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA  159 (251)
T ss_pred             hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence                  122222211       01000             01234445666776421   12356789999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.+...+.+.++++  +.|||++|||+++
T Consensus       160 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~  208 (251)
T PRK14249        160 RVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQ  208 (251)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            98875            69999999998888765  4799999999753

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.94  E-value=3.6e-27  Score=169.21  Aligned_cols=125  Identities=18%  Similarity=0.244  Sum_probs=87.9

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHH
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLR   95 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~   95 (158)
                      +.++ ++.|++.  ++++++||++++||+++|+||||||||||+++|++..... ..+-....... .....+.   .-.
T Consensus         3 ~~~l-~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~-~~~~~~~---~~~   75 (163)
T cd03216           3 LRGI-TKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS-FASPRDA---RRA   75 (163)
T ss_pred             EEEE-EEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC-cCCHHHH---Hhc
Confidence            3444 8888653  5899999999999999999999999999999999865432 11111111110 0010010   001


Q ss_pred             HcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538           96 KFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus        96 ~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      .++        .+.+|||||+||++||++++.            +||+.++..+.+.++++   +.|+|++|||.+
T Consensus        76 ~i~--------~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  143 (163)
T cd03216          76 GIA--------MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD  143 (163)
T ss_pred             CeE--------EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            111        123499999999999988775            69999999999988765   479999999975

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.5e-26  Score=177.35  Aligned_cols=141  Identities=23%  Similarity=0.315  Sum_probs=101.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce--------------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL--------------   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~--------------   71 (158)
                      ++.+.++ +++|+..  .+|+|+||++++|++++|+||||||||||+++|++....        .+              
T Consensus         7 ~l~~~nl-~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~   83 (261)
T PRK14258          7 AIKVNNL-SFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL   83 (261)
T ss_pred             eEEEeeE-EEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence            5666666 8888643  589999999999999999999999999999999975321        00              


Q ss_pred             -----eeeccccc-------hhhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHH
Q 044538           72 -----RIGRHSRH-------LEDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTL  123 (158)
Q Consensus        72 -----~~~~~~~~-------~~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~  123 (158)
                           .+++.++.       ..+.+.             ..+.+.++++.+++...   ...+++.+|||||+||++||+
T Consensus        84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar  163 (261)
T PRK14258         84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR  163 (261)
T ss_pred             HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence                 02222221       001110             11335567778887431   223567899999999999999


Q ss_pred             HHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          124 VSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       124 ~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +++.            +||+.+...+.+.++++    +.|||+||||+++
T Consensus       164 al~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~  213 (261)
T PRK14258        164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQ  213 (261)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            8775            69999999998888652    5799999999764

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.94  E-value=7.1e-27  Score=176.16  Aligned_cols=124  Identities=23%  Similarity=0.280  Sum_probs=92.0

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---cee------------eeccccc--------hhhHh-----
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR------------IGRHSRH--------LEDLL-----   84 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~------------~~~~~~~--------~~~~~-----   84 (158)
                      ++++||+|++|++++|+||||||||||+++|++....   .+.            .++.++.        ..+.+     
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~   80 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD   80 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence            4689999999999999999999999999999965321   000            1222211        01110     


Q ss_pred             ---------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhh
Q 044538           85 ---------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDE  143 (158)
Q Consensus        85 ---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~  143 (158)
                               ...+.+.++++.+++..... +++.+||||||||++||++++.            +||+.+...+.+.+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  159 (230)
T TIGR01184        81 RVLPDLSKSERRAIVEEHIALVGLTEAAD-KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ  159 (230)
T ss_pred             hcccCCCHHHHHHHHHHHHHHcCCHHHHc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence                     01234667889999976444 5678999999999999988775            7999999999988865


Q ss_pred             c----CCeEEEEeecCCC
Q 044538          144 F----AGGVVLVSHDSRL  157 (158)
Q Consensus       144 ~----~~tvi~vtHd~~~  157 (158)
                      +    +.|||++|||+++
T Consensus       160 ~~~~~~~tii~~sH~~~~  177 (230)
T TIGR01184       160 IWEEHRVTVLMVTHDVDE  177 (230)
T ss_pred             HHHhcCCEEEEEeCCHHH
Confidence            3    5799999999754

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.94  E-value=8.6e-27  Score=169.92  Aligned_cols=123  Identities=21%  Similarity=0.276  Sum_probs=87.1

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e------------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L------------------   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~------------------   71 (158)
                      +++.+.++ ++.|      +++++||++++|++++|+||||||||||+++|++.....   +                  
T Consensus         3 ~~l~~~~l-~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   75 (182)
T cd03215           3 PVLEVRGL-SVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA   75 (182)
T ss_pred             cEEEEecc-EEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhC
Confidence            45666665 7776      699999999999999999999999999999999753211   1                  


Q ss_pred             eeeccccc-----hhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH
Q 044538           72 RIGRHSRH-----LEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI  134 (158)
Q Consensus        72 ~~~~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~  134 (158)
                      .+++.++.     +.+..+..+.+...               ..||||||||++||++++.            +||+.++
T Consensus        76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~---------------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~  140 (182)
T cd03215          76 GIAYVPEDRKREGLVLDLSVAENIALS---------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAK  140 (182)
T ss_pred             CeEEecCCcccCcccCCCcHHHHHHHH---------------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHH
Confidence            11222211     01111111111100               1199999999999998775            6999999


Q ss_pred             HHHHHHHhhc---CCeEEEEeecCCC
Q 044538          135 VAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       135 ~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ..+.+.++++   +.|+|++|||+++
T Consensus       141 ~~l~~~l~~~~~~~~tiii~sh~~~~  166 (182)
T cd03215         141 AEIYRLIRELADAGKAVLLISSELDE  166 (182)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            9999988765   4799999999753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.94  E-value=2.9e-26  Score=172.26  Aligned_cols=139  Identities=22%  Similarity=0.348  Sum_probs=100.9

Q ss_pred             hhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---c-c----------------ee
Q 044538           15 LQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---Q-K----------------LR   72 (158)
Q Consensus        15 l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---~-~----------------~~   72 (158)
                      +.+.++ +++|++.  .+++++++||+|.+||+++|+||||||||||+++|++...   . .                ..
T Consensus         4 ~~~~~~-~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (226)
T cd03234           4 LPWWDV-GLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC   82 (226)
T ss_pred             ceeecc-eeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence            345555 8888764  2568999999999999999999999999999999997543   1 1                11


Q ss_pred             eeccccch--------hhHhh-----------H----HHHHHH-HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           73 IGRHSRHL--------EDLLT-----------M----EEAVHA-KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        73 ~~~~~~~~--------~~~~~-----------~----~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                      +++.++..        .+.+.           .    ...+.+ .++.+++..... +++.+|||||+||++||++++. 
T Consensus        83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~  161 (226)
T cd03234          83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG-NLVKGISGGERRRVSIAVQLLWD  161 (226)
T ss_pred             EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhc-ccccCcCHHHHHHHHHHHHHHhC
Confidence            33332211        01000           0    012333 677788865443 5678999999999999988775 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc---CCeEEEEeecC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDS  155 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~  155 (158)
                                 +||+.+...+.+.+++.   +.|+|++||+.
T Consensus       162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~  203 (226)
T cd03234         162 PKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP  203 (226)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence                       69999999999888764   46999999997

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.94  E-value=1.2e-26  Score=174.41  Aligned_cols=139  Identities=23%  Similarity=0.312  Sum_probs=95.7

Q ss_pred             hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538           16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR   75 (158)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~   75 (158)
                      .+.++ ++.|+.. ..+++++||++++|++++|+||||||||||+++|++....                    +..+++
T Consensus         4 ~~~~l-~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   81 (229)
T cd03254           4 EFENV-NFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV   81 (229)
T ss_pred             EEEEE-EEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence            44455 8888642 2489999999999999999999999999999999964321                    011333


Q ss_pred             cccch--hh-----Hhh------HHHHHHHHHHHcC-----------CCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           76 HSRHL--ED-----LLT------MEEAVHAKLRKFG-----------LPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        76 ~~~~~--~~-----~~~------~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      .++..  .+     ...      ..+.+.+.++.++           +..... +++.+||||||||++||++++.    
T Consensus        82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~~rv~la~al~~~p~l  160 (229)
T cd03254          82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKI  160 (229)
T ss_pred             ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhh-cCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            33321  00     000      0122333333333           332222 3468999999999999988775    


Q ss_pred             --------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                              +||+.+...+.+.+.++.  .|||++|||.++
T Consensus       161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~  200 (229)
T cd03254         161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLST  200 (229)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence                    699999999998887763  699999999754

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.94  E-value=1.3e-26  Score=172.74  Aligned_cols=132  Identities=24%  Similarity=0.315  Sum_probs=97.8

Q ss_pred             eeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeee
Q 044538           19 EVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIG   74 (158)
Q Consensus        19 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~   74 (158)
                      ++ +++|++.  . + |+||+|++ ++++|+||||||||||+++|++....                        ...++
T Consensus         5 ~l-~~~~~~~--~-~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   78 (214)
T cd03297           5 DI-EKRLPDF--T-L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG   78 (214)
T ss_pred             ee-eEecCCe--e-e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence            44 8888764  2 3 99999999 99999999999999999999864210                        01133


Q ss_pred             ccccch--------hhHhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538           75 RHSRHL--------EDLLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------  127 (158)
Q Consensus        75 ~~~~~~--------~~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------  127 (158)
                      +.++..        .+.+.          ..+++.++++.+++..... +++.+||||||||++||++++.         
T Consensus        79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDE  157 (214)
T cd03297          79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-RYPAQLSGGEKQRVALARALAAQPELLLLDE  157 (214)
T ss_pred             EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            333221        11110          1235677899999976444 5678999999999999988775         


Q ss_pred             ---CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ---HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                         +||+.++..+.+.++++    +.|+|++|||.++
T Consensus       158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~  194 (214)
T cd03297         158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE  194 (214)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH
Confidence               69999999999888654    5799999999754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.94  E-value=1.2e-26  Score=163.35  Aligned_cols=113  Identities=34%  Similarity=0.496  Sum_probs=87.0

Q ss_pred             heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcce-eeeccccchhhHhhHHHHHHHHHHH
Q 044538           18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKL-RIGRHSRHLEDLLTMEEAVHAKLRK   96 (158)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~   96 (158)
                      .++ ++.|++.  .+++++||++++||+++|+||||||||||++++++.....- .+-....                ..
T Consensus         4 ~~l-~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------------~~   64 (144)
T cd03221           4 ENL-SKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------------VK   64 (144)
T ss_pred             EEE-EEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------------EE
Confidence            344 7788653  58999999999999999999999999999999998653221 1111000                00


Q ss_pred             cCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538           97 FGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus        97 ~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      ++        .+.+||+||+||++||++++.            +||+.+...+.+.+++.+.|+|++||+.++
T Consensus        65 i~--------~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~  129 (144)
T cd03221          65 IG--------YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYF  129 (144)
T ss_pred             EE--------EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            00        112399999999999988775            699999999999999888899999999753

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.6e-26  Score=178.14  Aligned_cols=142  Identities=23%  Similarity=0.316  Sum_probs=100.6

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------   71 (158)
                      .+++.+.++ ++.|+..  .+|+++||+|++|++++|+|+||||||||+++|++...        ..+            
T Consensus        22 ~~~l~~~~l-~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   98 (271)
T PRK14238         22 KVVFDTQNL-NLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY   98 (271)
T ss_pred             ceEEEEeee-EEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence            457777676 8888753  58999999999999999999999999999999997532        111            


Q ss_pred             -------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCC----CCCCCCCCCCCCChHHHHHHH
Q 044538           72 -------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGL----PGHNHLTPIANLSGGQKVRVM  120 (158)
Q Consensus        72 -------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGqkqrv~  120 (158)
                             .+++.++..       .+.+.             ..+.+.+.++.+++    .... .+++.+||||||||++
T Consensus        99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qrv~  177 (271)
T PRK14238         99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQRLC  177 (271)
T ss_pred             cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHHHH
Confidence                   122222221       01110             01123344555543    2222 3467899999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.+...+.+.++++  +.|||++|||+++
T Consensus       178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~  228 (271)
T PRK14238        178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ  228 (271)
T ss_pred             HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH
Confidence            9988775            69999999999988776  3699999999764

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.94  E-value=3.4e-26  Score=170.97  Aligned_cols=138  Identities=23%  Similarity=0.225  Sum_probs=94.0

Q ss_pred             heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceee
Q 044538           18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRI   73 (158)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~   73 (158)
                      .+. .+.|+.. .++++++||++++|++++|+||||||||||+++|++....                        +..+
T Consensus         4 ~~~-~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   81 (218)
T cd03290           4 TNG-YFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV   81 (218)
T ss_pred             eee-EEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence            344 7788754 4589999999999999999999999999999999964210                        0123


Q ss_pred             eccccch-------hhHhhH-----HHHHHHHHHHcCCCCCC----------CCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           74 GRHSRHL-------EDLLTM-----EEAVHAKLRKFGLPGHN----------HLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~~-----~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      ++.++..       .+.+..     .+...+.++.+++.+..          ...++..|||||+||++||++++.    
T Consensus        82 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i  161 (218)
T cd03290          82 AYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI  161 (218)
T ss_pred             EEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence            4433321       011110     12334455555543210          123568999999999999998775    


Q ss_pred             --------CCCHHHHHHHHH--HH---hhcCCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAV--TL---DEFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~--~l---~~~~~tvi~vtHd~~~  157 (158)
                              +||+.+...+.+  .+   ++.+.|+|++|||.++
T Consensus       162 lllDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~  204 (218)
T cd03290         162 VFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY  204 (218)
T ss_pred             EEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence                    699998887766  33   3445799999999764

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.94  E-value=2e-26  Score=166.77  Aligned_cols=135  Identities=26%  Similarity=0.377  Sum_probs=88.1

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHH
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLR   95 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~   95 (158)
                      +.++ ++.|+.....+++++||++++||+++|+||||||||||+++|++..... ..+-........ .... ...   .
T Consensus         3 ~~~l-~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~-~~~---~   76 (173)
T cd03246           3 VENV-SFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQ-WDPN-ELG---D   76 (173)
T ss_pred             EEEE-EEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEccc-CCHH-HHH---h
Confidence            3444 8888754345899999999999999999999999999999999864321 111111111000 0000 011   1


Q ss_pred             HcCCCCC---CCCCCCC--CCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecC
Q 044538           96 KFGLPGH---NHLTPIA--NLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDS  155 (158)
Q Consensus        96 ~~~l~~~---~~~~~~~--~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~  155 (158)
                      .+++-..   .....+.  -|||||+||++||++++.            +||+.++..+.+.++++   +.|+|++|||.
T Consensus        77 ~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~  156 (173)
T cd03246          77 HVGYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP  156 (173)
T ss_pred             heEEECCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            1111000   0000011  199999999999998775            69999999999888664   46999999997


Q ss_pred             CC
Q 044538          156 RL  157 (158)
Q Consensus       156 ~~  157 (158)
                      ++
T Consensus       157 ~~  158 (173)
T cd03246         157 ET  158 (173)
T ss_pred             HH
Confidence            53

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.94  E-value=4.5e-26  Score=167.49  Aligned_cols=129  Identities=22%  Similarity=0.288  Sum_probs=90.5

Q ss_pred             hhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---cc--e-------------eee
Q 044538           15 LQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---QK--L-------------RIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---~~--~-------------~~~   74 (158)
                      +.+.++ ++.|++.  ..++++++||++++|++++|+||||||||||+++|++...   ..  +             .++
T Consensus         4 l~~~~l-~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~   82 (192)
T cd03232           4 LTWKNL-NYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG   82 (192)
T ss_pred             EEEeee-EEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence            445555 8888642  2458999999999999999999999999999999997421   11  1             122


Q ss_pred             ccccch--hhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHH
Q 044538           75 RHSRHL--EDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVT  140 (158)
Q Consensus        75 ~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~  140 (158)
                      +.++..  ....+..+.+.... .           ..+|||||+||++||++++.            +||+.+...+.+.
T Consensus        83 ~~~q~~~~~~~~tv~~~l~~~~-~-----------~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~  150 (192)
T cd03232          83 YVEQQDVHSPNLTVREALRFSA-L-----------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRF  150 (192)
T ss_pred             EecccCccccCCcHHHHHHHHH-H-----------HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHH
Confidence            222211  11122223222110 0           01899999999999988775            6999999999998


Q ss_pred             Hhhc---CCeEEEEeecCC
Q 044538          141 LDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       141 l~~~---~~tvi~vtHd~~  156 (158)
                      ++++   +.|+|++|||.+
T Consensus       151 l~~~~~~~~tiiivtH~~~  169 (192)
T cd03232         151 LKKLADSGQAILCTIHQPS  169 (192)
T ss_pred             HHHHHHcCCEEEEEEcCCh
Confidence            8765   479999999975

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.94  E-value=2.9e-26  Score=173.37  Aligned_cols=139  Identities=28%  Similarity=0.317  Sum_probs=94.6

Q ss_pred             hheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538           17 LIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR   75 (158)
Q Consensus        17 ~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~   75 (158)
                      +.++ ++.|+.. ..++++++||++++|++++|+||||||||||+++|++....                    +..+++
T Consensus         3 i~~l-~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   81 (238)
T cd03249           3 FKNV-SFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGL   81 (238)
T ss_pred             EEEE-EEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEE
Confidence            3444 8888643 23589999999999999999999999999999999964211                    011333


Q ss_pred             cccchh-hHhhH------------HHHHHHHHHHc-----------CCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           76 HSRHLE-DLLTM------------EEAVHAKLRKF-----------GLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        76 ~~~~~~-~~~~~------------~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      .++... ...+.            .+.+.+.++.+           ++..... +++.+|||||+||++||++++.    
T Consensus        82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~l  160 (238)
T cd03249          82 VSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKI  160 (238)
T ss_pred             ECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            333210 00011            11122222222           2322222 4568999999999999988775    


Q ss_pred             --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                              +||+.++..+.+.+++.  +.|||++|||+++
T Consensus       161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~  200 (238)
T cd03249         161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLST  200 (238)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence                    69999999999988765  3689999999764

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.7e-26  Score=187.46  Aligned_cols=142  Identities=26%  Similarity=0.297  Sum_probs=107.6

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh-------------------hcceeee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR-------------------RQKLRIG   74 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~-------------------~~~~~~~   74 (158)
                      .+++.++ ++.|+.++ ++|+++||+|++||.+||+|+|||||||++|++....                   .-+..+|
T Consensus       351 ~I~F~dV-~f~y~~k~-~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig  428 (591)
T KOG0057|consen  351 SIEFDDV-HFSYGPKR-KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIG  428 (591)
T ss_pred             cEEEEee-EEEeCCCC-ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhee
Confidence            4667666 99998764 4899999999999999999999999999999997321                   1122367


Q ss_pred             ccccch--hhH-h----------hHHHHHHHHHHHcCCCCCCCCC----------CCCCCChHHHHHHHHHHHHhh----
Q 044538           75 RHSRHL--EDL-L----------TMEEAVHAKLRKFGLPGHNHLT----------PIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        75 ~~~~~~--~~~-~----------~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      +.||+-  ++. .          ...+++.+..+++++.+...+.          +...|||||||||++||+++-    
T Consensus       429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I  508 (591)
T KOG0057|consen  429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI  508 (591)
T ss_pred             EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence            777642  111 0          1146777888888886532221          235899999999999998774    


Q ss_pred             --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                              +||.++..++++.+.+.  +.|+|+|-||++.
T Consensus       509 l~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~l  548 (591)
T KOG0057|consen  509 LLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDL  548 (591)
T ss_pred             EEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchh
Confidence                    79999999999998773  4799999999875

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.94  E-value=2.6e-26  Score=192.97  Aligned_cols=143  Identities=27%  Similarity=0.335  Sum_probs=106.5

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+.+.++ +|+|++...++|+|+||++++|++++|+||||||||||++++++...+                    +..+
T Consensus       338 ~i~~~~v-~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i  416 (574)
T PRK11160        338 SLTLNNV-SFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI  416 (574)
T ss_pred             eEEEEEE-EEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence            3666666 999976444689999999999999999999999999999999864321                    0113


Q ss_pred             eccccch-------hhHhh------HHHHHHHHHHHcCCCCCCCC---------CCCCCCChHHHHHHHHHHHHhh----
Q 044538           74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNHL---------TPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~~---------~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      ++.+|+.       .++..      .++++.++++.+++.+....         .....||||||||++|||+++.    
T Consensus       417 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i  496 (574)
T PRK11160        417 SVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL  496 (574)
T ss_pred             eEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            4433321       11111      23567788888888654332         1235799999999999999875    


Q ss_pred             --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                              +||+.+...+.+.+.+.  +.|+|+|||+++.
T Consensus       497 lilDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~  536 (574)
T PRK11160        497 LLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTG  536 (574)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhH
Confidence                    69999999999999876  4799999999753

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.2e-26  Score=188.33  Aligned_cols=137  Identities=30%  Similarity=0.402  Sum_probs=102.9

Q ss_pred             eeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce-----------------eeecccc
Q 044538           19 EVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL-----------------RIGRHSR   78 (158)
Q Consensus        19 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~-----------------~~~~~~~   78 (158)
                      ++ ++.|+.++ ++++|+||++++|+.++|+|+||||||||+++++|....   .+                 .+++.+|
T Consensus       325 ~l-~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q  402 (559)
T COG4988         325 NL-SFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ  402 (559)
T ss_pred             ce-EEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence            55 99998876 689999999999999999999999999999999974321   11                 1222222


Q ss_pred             ch-------hhHh------hHHHHHHHHHHHcCCCCCCCC-----C----CCCCCChHHHHHHHHHHHHhh---------
Q 044538           79 HL-------EDLL------TMEEAVHAKLRKFGLPGHNHL-----T----PIANLSGGQKVRVMFTLVSMY---------  127 (158)
Q Consensus        79 ~~-------~~~~------~~~~~~~~~l~~~~l~~~~~~-----~----~~~~LSgGqkqrv~ia~~~l~---------  127 (158)
                      ..       .+++      ..++++.++++..++.+....     .    ....|||||+|||++|||++.         
T Consensus       403 ~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE  482 (559)
T COG4988         403 NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE  482 (559)
T ss_pred             CCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence            21       1222      124667788888777554332     1    224699999999999999875         


Q ss_pred             ---CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          128 ---HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       128 ---~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                         +||.++...+.+.+.+..  .|+|++||++..
T Consensus       483 pTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~  517 (559)
T COG4988         483 PTAHLDAETEQIILQALQELAKQKTVLVITHRLED  517 (559)
T ss_pred             CccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHH
Confidence               799999999999998764  799999999753

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.94  E-value=2.1e-26  Score=193.62  Aligned_cols=142  Identities=25%  Similarity=0.342  Sum_probs=103.4

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~   74 (158)
                      +.+.++ +|+|++...++|+|+||+|++|+.++|+||||||||||+++|++...+.                    ..++
T Consensus       342 i~~~~v-sf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~  420 (582)
T PRK11176        342 IEFRNV-TFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA  420 (582)
T ss_pred             EEEEEE-EEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence            566666 9999765456899999999999999999999999999999999743211                    1234


Q ss_pred             ccccch-------hhHhh-------HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh---
Q 044538           75 RHSRHL-------EDLLT-------MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~-------~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      +.+|+.       .++..       .++++.++++..++.+...      +    ....+||||||||++|||+++.   
T Consensus       421 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~  500 (582)
T PRK11176        421 LVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP  500 (582)
T ss_pred             EEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence            444431       11111       1356666777666432111      1    1235799999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||+.+...+.+.+.+.  +.|+|+|||+++.
T Consensus       501 ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~  541 (582)
T PRK11176        501 ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST  541 (582)
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHH
Confidence                     69999999999999876  3799999999753

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.8e-26  Score=174.83  Aligned_cols=138  Identities=20%  Similarity=0.296  Sum_probs=99.6

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce-----------------
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL-----------------   71 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~-----------------   71 (158)
                      +.++ ++.|+.  .++++++||+|.+|++++|+||||||||||+++|++...        ..+                 
T Consensus         8 ~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   84 (251)
T PRK14244          8 VKNL-NLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL   84 (251)
T ss_pred             eeeE-EEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence            3444 888864  358999999999999999999999999999999987532        110                 


Q ss_pred             --eeeccccch-------hhHhh--------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHHHH
Q 044538           72 --RIGRHSRHL-------EDLLT--------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTLVS  125 (158)
Q Consensus        72 --~~~~~~~~~-------~~~~~--------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~~~  125 (158)
                        .+++.++..       .+.+.              ..+.+.++++.+++.+.   ...+++.+||||||||++||+++
T Consensus        85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral  164 (251)
T PRK14244         85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI  164 (251)
T ss_pred             hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence              123322221       01100              11334567888998541   12245689999999999999887


Q ss_pred             hh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          126 MY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       126 l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      +.            +||+.+...+.+.++++  +.|||++|||.++
T Consensus       165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~  210 (251)
T PRK14244        165 AVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQ  210 (251)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            75            69999999999888765  4799999999764

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.94  E-value=2.3e-26  Score=195.83  Aligned_cols=141  Identities=20%  Similarity=0.236  Sum_probs=107.2

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch----
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL----   80 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~----   80 (158)
                      ++++.++ ++.|+++. ++++++||++++||+++|+||||||||||+++|++....         +..+++.+|..    
T Consensus       451 ~i~~~nv-~~~~~~~~-~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~  528 (659)
T TIGR00954       451 GIKFENI-PLVTPNGD-VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL  528 (659)
T ss_pred             eEEEEee-EEECCCCC-eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC
Confidence            4666666 88886443 589999999999999999999999999999999975321         11244444431    


Q ss_pred             ---hhHhh-------------HHHHHHHHHHHcCCCCCCCCCC---------CCCCChHHHHHHHHHHHHhh--------
Q 044538           81 ---EDLLT-------------MEEAVHAKLRKFGLPGHNHLTP---------IANLSGGQKVRVMFTLVSMY--------  127 (158)
Q Consensus        81 ---~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkqrv~ia~~~l~--------  127 (158)
                         .+...             ..+++.++++.+++.+... ++         ..+||||||||++|||+++.        
T Consensus       529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~-~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLD  607 (659)
T TIGR00954       529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILE-REGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILD  607 (659)
T ss_pred             cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHh-hcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence               11110             1345677888888865433 22         36899999999999998875        


Q ss_pred             ----CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          128 ----HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                          +||+.+...+.+.+++.+.|+|+||||+++
T Consensus       608 Epts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~  641 (659)
T TIGR00954       608 ECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSL  641 (659)
T ss_pred             CCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHH
Confidence                699999999999999888899999999764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.94  E-value=2.5e-26  Score=210.91  Aligned_cols=142  Identities=14%  Similarity=0.178  Sum_probs=108.2

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIG   74 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~   74 (158)
                      .+.+.++ ++.|+.+.+.+++|+||++++||+++|+||||||||||+++|+|...+                   +..+|
T Consensus       928 ~L~I~nL-sK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257       928 GVCVKNL-VKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred             eEEEEeE-EEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence            4556565 888864335689999999999999999999999999999999964311                   11244


Q ss_pred             ccccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538           75 RHSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        75 ~~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                      +.+|..  .      +.+            ...+++.++++.+++.+..+ +++.+||||||||++||+|++.       
T Consensus      1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqKQRLsLArALi~~PkVLLL 1085 (2272)
T TIGR01257      1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-EEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085 (2272)
T ss_pred             EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            443321  1      100            01245678899999987654 5679999999999999998775       


Q ss_pred             -----CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 -----HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                           +||+.++..+++.|++.  +.|||++|||+++
T Consensus      1086 DEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmde 1122 (2272)
T TIGR01257      1086 DEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDE 1122 (2272)
T ss_pred             ECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence                 79999999999999776  4699999999864

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.94  E-value=1.8e-26  Score=192.20  Aligned_cols=142  Identities=28%  Similarity=0.372  Sum_probs=104.2

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+.+.++ +|+|++..+++++|+||++++|+.++|+||||||||||+++|++...+                    +..+
T Consensus       320 ~i~~~~v-~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i  398 (529)
T TIGR02857       320 SLEFSGL-SVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI  398 (529)
T ss_pred             eEEEEEE-EEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence            3566666 999986555689999999999999999999999999999999864321                    0123


Q ss_pred             eccccch-------hhHhh------HHHHHHHHHHHcCCCCCCCC----------CCCCCCChHHHHHHHHHHHHhh---
Q 044538           74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNHL----------TPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      ++.+|..       .+++.      .++++.++++..++.+....          ....+||||||||++|||+++.   
T Consensus       399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~  478 (529)
T TIGR02857       399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP  478 (529)
T ss_pred             EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence            4444331       11111      13556677777766432111          1346899999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                               +||+.+...+.+.+.+.  +.|+|+|||+++
T Consensus       479 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~  518 (529)
T TIGR02857       479 LLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLA  518 (529)
T ss_pred             EEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence                     69999999999999875  479999999974

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.3e-26  Score=175.14  Aligned_cols=143  Identities=21%  Similarity=0.292  Sum_probs=102.3

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~------------   71 (158)
                      .+++.+.++ +++|+..  .+|+++||+|++||+++|+||||||||||+++|++....        .+            
T Consensus        14 ~~~l~~~~l-~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~   90 (265)
T PRK14252         14 QQKSEVNKL-NFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP   90 (265)
T ss_pred             CceEEEEEE-EEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence            456776666 9988753  589999999999999999999999999999999975320        11            


Q ss_pred             ---------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHH
Q 044538           72 ---------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRV  119 (158)
Q Consensus        72 ---------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv  119 (158)
                               .+++.++..       .+.+.             ..+.+..+++.+++..   ....+++.+|||||+||+
T Consensus        91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv  170 (265)
T PRK14252         91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL  170 (265)
T ss_pred             ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH
Confidence                     122322210       01110             0134455667777632   112346689999999999


Q ss_pred             HHHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          120 MFTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       120 ~ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      +||++++.            +||+.+...+.+.++++.  .|||+||||+++
T Consensus       171 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~  222 (265)
T PRK14252        171 CIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQ  222 (265)
T ss_pred             HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence            99988775            699999999998887654  699999999764

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.94  E-value=7.5e-26  Score=166.58  Aligned_cols=129  Identities=28%  Similarity=0.327  Sum_probs=91.1

Q ss_pred             hhhheeeeEEcCCC----CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh--hcc-ee---------------
Q 044538           15 LQLIEVISFSYPNL----QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR--RQK-LR---------------   72 (158)
Q Consensus        15 l~~~~~~~~~~~~~----~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~--~~~-~~---------------   72 (158)
                      +.+.++ ++.|+..    ..++++++||++++|++++|+||||||||||+++|++..  ... ..               
T Consensus         4 l~~~~l-s~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~   82 (194)
T cd03213           4 LSFRNL-TVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK   82 (194)
T ss_pred             EEEEee-EEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence            445555 8888752    245899999999999999999999999999999999865  321 11               


Q ss_pred             -eeccccch--hhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538           73 -IGRHSRHL--EDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV  137 (158)
Q Consensus        73 -~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l  137 (158)
                       +++.++..  ....+..+.+....            +..+|||||+||++||++++.            +||+.+...+
T Consensus        83 ~i~~~~q~~~~~~~~t~~~~i~~~~------------~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l  150 (194)
T cd03213          83 IIGYVPQDDILHPTLTVRETLMFAA------------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV  150 (194)
T ss_pred             eEEEccCcccCCCCCcHHHHHHHHH------------HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence             22222211  11112222221100            012799999999999998775            6999999999


Q ss_pred             HHHHhhc---CCeEEEEeecCC
Q 044538          138 AVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       138 ~~~l~~~---~~tvi~vtHd~~  156 (158)
                      .+.++++   +.|+|++|||++
T Consensus       151 ~~~l~~~~~~~~tiii~sh~~~  172 (194)
T cd03213         151 MSLLRRLADTGRTIICSIHQPS  172 (194)
T ss_pred             HHHHHHHHhCCCEEEEEecCch
Confidence            9888765   469999999975

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.4e-26  Score=190.04  Aligned_cols=140  Identities=14%  Similarity=0.206  Sum_probs=99.7

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c------------------e
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K------------------L   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~------------------~   71 (158)
                      +++.+.++ ++.+    ..+|+++||+|++||+++|+||||||||||+++|++....   .                  .
T Consensus       249 ~~i~~~~l-~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~  323 (491)
T PRK10982        249 VILEVRNL-TSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH  323 (491)
T ss_pred             cEEEEeCc-cccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence            45555555 5542    2479999999999999999999999999999999864210   0                  0


Q ss_pred             eeeccccch-----h-----------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538           72 RIGRHSRHL-----E-----------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        72 ~~~~~~~~~-----~-----------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia  122 (158)
                      .+++.++..     .           ...             ...+.+.++++.+++.....++++.+|||||||||+||
T Consensus       324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la  403 (491)
T PRK10982        324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG  403 (491)
T ss_pred             CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence            133332210     0           000             01234567788888853233467899999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhh---cCCeEEEEeecCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDE---FAGGVVLVSHDSRL  157 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~---~~~tvi~vtHd~~~  157 (158)
                      ++++.            +||+.++..+.+.+++   .+.|||++|||+++
T Consensus       404 ~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~  453 (491)
T PRK10982        404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE  453 (491)
T ss_pred             HHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH
Confidence            88764            7999999999887744   46799999999864

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.94  E-value=5.6e-26  Score=164.12  Aligned_cols=135  Identities=30%  Similarity=0.403  Sum_probs=87.9

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHH
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLR   95 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~   95 (158)
                      +.++ ++.|++....+++++||++++|++++|+||||||||||+++|++..... ..+-+....... .... ...   .
T Consensus         3 ~~~l-~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~-~~~---~   76 (171)
T cd03228           3 FKNV-SFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRD-LDLE-SLR---K   76 (171)
T ss_pred             EEEE-EEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhh-cCHH-HHH---h
Confidence            3344 8888754235899999999999999999999999999999999864321 111111111100 0000 000   1


Q ss_pred             HcCCCC---CCCCCCCC-C-CChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538           96 KFGLPG---HNHLTPIA-N-LSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSR  156 (158)
Q Consensus        96 ~~~l~~---~~~~~~~~-~-LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~  156 (158)
                      .+++-.   ......+. . |||||+||++||++++.            +||+.++..+.+.++++.  .|+|++|||++
T Consensus        77 ~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~  156 (171)
T cd03228          77 NIAYVPQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS  156 (171)
T ss_pred             hEEEEcCCchhccchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence            111100   00000000 1 99999999999988765            699999999999887653  69999999976


Q ss_pred             C
Q 044538          157 L  157 (158)
Q Consensus       157 ~  157 (158)
                      +
T Consensus       157 ~  157 (171)
T cd03228         157 T  157 (171)
T ss_pred             H
Confidence            4

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.94  E-value=9.8e-26  Score=167.25  Aligned_cols=137  Identities=18%  Similarity=0.175  Sum_probs=96.0

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+.+.++ +++|+.....+++++||+|++|++++|+||||||||||+++|++....                    +..+
T Consensus         6 ~l~~~~l-~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   84 (207)
T cd03369           6 EIEVENL-SVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL   84 (207)
T ss_pred             eEEEEEE-EEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            4566565 888875333589999999999999999999999999999999864211                    1123


Q ss_pred             eccccch--hhHhhHHHHH--------HHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538           74 GRHSRHL--EDLLTMEEAV--------HAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT  131 (158)
Q Consensus        74 ~~~~~~~--~~~~~~~~~~--------~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~  131 (158)
                      ++.++..  .+ .+..+.+        .++.+.+++    . .++.+|||||+||++||++++.            +||+
T Consensus        85 ~~v~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~l~~----~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~  158 (207)
T cd03369          85 TIIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGALRV----S-EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY  158 (207)
T ss_pred             EEEecCCcccC-ccHHHHhcccCCCCHHHHHHHhhc----c-CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH
Confidence            3333321  11 0111111        112222221    2 3568999999999999998775            6999


Q ss_pred             HHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          132 QSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       132 ~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      .+...+.+.++++  +.|+|++|||.++
T Consensus       159 ~~~~~l~~~l~~~~~~~tiii~th~~~~  186 (207)
T cd03369         159 ATDALIQKTIREEFTNSTILTIAHRLRT  186 (207)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence            9999999988775  4699999999764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.94  E-value=3.3e-26  Score=165.56  Aligned_cols=131  Identities=21%  Similarity=0.292  Sum_probs=85.9

Q ss_pred             heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHHH
Q 044538           18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLRK   96 (158)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~   96 (158)
                      .++ +++|+..  ++++++||++.+||+++|+||||||||||+++|++..... ..+-........ ..  .   ..-..
T Consensus         4 ~~l-~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-~~--~---~~~~~   74 (173)
T cd03230           4 RNL-SKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EP--E---EVKRR   74 (173)
T ss_pred             EEE-EEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccc-ch--H---hhhcc
Confidence            344 7888643  5899999999999999999999999999999999864321 111111111000 00  0   00011


Q ss_pred             cCCCCCC----CCCCC-C--CCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeec
Q 044538           97 FGLPGHN----HLTPI-A--NLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHD  154 (158)
Q Consensus        97 ~~l~~~~----~~~~~-~--~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd  154 (158)
                      +++-...    ....+ .  .|||||+||++||++++.            +||+.+...+.+.++++   +.|+|++|||
T Consensus        75 i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~  154 (173)
T cd03230          75 IGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI  154 (173)
T ss_pred             EEEEecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            1110000    00000 0  199999999999998775            69999999999988765   3689999999


Q ss_pred             CCC
Q 044538          155 SRL  157 (158)
Q Consensus       155 ~~~  157 (158)
                      .++
T Consensus       155 ~~~  157 (173)
T cd03230         155 LEE  157 (173)
T ss_pred             HHH
Confidence            753

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.93  E-value=3.2e-26  Score=196.11  Aligned_cols=142  Identities=27%  Similarity=0.353  Sum_probs=103.4

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~   74 (158)
                      +++.++ +|+|++..+++|+|+||+|++||.++|+||||||||||+++|++...+                    +..++
T Consensus       464 I~~~~v-sf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~  542 (694)
T TIGR03375       464 IEFRNV-SFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG  542 (694)
T ss_pred             EEEEEE-EEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence            566666 999976555689999999999999999999999999999999864321                    11244


Q ss_pred             ccccch-------hhHhh------HHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh----
Q 044538           75 RHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      +.+|..       .+++.      .++++.++++..++.+...          ......||||||||++|||+++.    
T Consensus       543 ~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~i  622 (694)
T TIGR03375       543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPI  622 (694)
T ss_pred             EECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            444431       11111      1355666666665532111          01235799999999999999875    


Q ss_pred             --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                              +||+.+...+.+.+.+.  +.|+|+|||+++.
T Consensus       623 liLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~  662 (694)
T TIGR03375       623 LLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSL  662 (694)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence                    69999999999999876  4799999999753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=2.8e-26  Score=169.62  Aligned_cols=142  Identities=23%  Similarity=0.325  Sum_probs=99.5

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~   71 (158)
                      +|+++.++ +..|+.  ..+|++|||++++||+++|+|+||+|||||++.|++..+.                     +.
T Consensus         2 ~mL~v~~l-~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~   78 (237)
T COG0410           2 PMLEVENL-SAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL   78 (237)
T ss_pred             CceeEEeE-eecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence            46777776 888876  3589999999999999999999999999999999964321                     12


Q ss_pred             eeecccc--chhhHhhHHHH-----------------HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           72 RIGRHSR--HLEDLLTMEEA-----------------VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        72 ~~~~~~~--~~~~~~~~~~~-----------------~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      .+++.++  ..++.++++++                 .+++.+.|-.-....+++..+|||||||.++||||++.     
T Consensus        79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL  158 (237)
T COG0410          79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL  158 (237)
T ss_pred             CeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence            2344433  22333333322                 33344454321222335678999999999999999887     


Q ss_pred             -------CCCHHHHHHHHHHHhhcC----CeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEFA----GGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~~----~tvi~vtHd~~~  157 (158)
                             +|-|.-..++.+.+++..    .||++|.++..+
T Consensus       159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~  199 (237)
T COG0410         159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF  199 (237)
T ss_pred             EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH
Confidence                   355777777777776543    499999998653

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=8.3e-26  Score=173.32  Aligned_cols=138  Identities=20%  Similarity=0.210  Sum_probs=100.0

Q ss_pred             heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------------
Q 044538           18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------------   71 (158)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------------   71 (158)
                      .+..++.|+.  ..+++++||++++|++++|+||||||||||+++|++...        ..+                  
T Consensus        11 ~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~   88 (261)
T PRK14263         11 CKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR   88 (261)
T ss_pred             EEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhh
Confidence            3444888864  358999999999999999999999999999999986531        100                  


Q ss_pred             -eeeccccch-------hhHhh-----------HHHHHHHHHHHcCCCCCC---CCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           72 -RIGRHSRHL-------EDLLT-----------MEEAVHAKLRKFGLPGHN---HLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        72 -~~~~~~~~~-------~~~~~-----------~~~~~~~~l~~~~l~~~~---~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                       .+++.++..       .+.+.           ..+.+.++++.+++....   ...++.+|||||+||++||++++.  
T Consensus        89 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p  168 (261)
T PRK14263         89 RYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP  168 (261)
T ss_pred             hceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence             122222210       11111           123566788888885321   124568999999999999998875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                                +||+.++..+.+.++++.  .|+|++|||+++
T Consensus       169 ~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~  210 (261)
T PRK14263        169 EVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ  210 (261)
T ss_pred             CEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence                      699999999999988763  699999999764

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.93  E-value=4.3e-26  Score=191.32  Aligned_cols=142  Identities=22%  Similarity=0.301  Sum_probs=102.8

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~   74 (158)
                      +.+.++ +++|+....++|+|+||++++|++++|+|+||||||||+++|++...+.                    ..++
T Consensus       331 i~~~~v-~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~  409 (571)
T TIGR02203       331 VEFRNV-TFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA  409 (571)
T ss_pred             EEEEEE-EEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence            555565 9999764456899999999999999999999999999999998753211                    1134


Q ss_pred             ccccch-------hhHhh-------HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh---
Q 044538           75 RHSRHL-------EDLLT-------MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~-------~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      +.+|+.       .+++.       .++++.++++.+++.+...      +    .....||||||||++|||+++.   
T Consensus       410 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~  489 (571)
T TIGR02203       410 LVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAP  489 (571)
T ss_pred             EEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            444331       11111       1355666777766532111      1    1224799999999999998875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||..+...+.+.+.+.  +.|+|+|||+.+.
T Consensus       490 illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~  530 (571)
T TIGR02203       490 ILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLST  530 (571)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHH
Confidence                     69999999999999876  3799999999753

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=5.1e-26  Score=189.74  Aligned_cols=142  Identities=28%  Similarity=0.422  Sum_probs=96.9

Q ss_pred             hhhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538           14 MLQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~   72 (158)
                      .+++.++ +|+|+..+ .++|+|+||+|+|||++||+||||+||||+.+++.....+                    +..
T Consensus       465 ~IeF~~V-sFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~  543 (716)
T KOG0058|consen  465 VIEFEDV-SFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK  543 (716)
T ss_pred             eEEEEEe-eeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence            4667776 99998764 4789999999999999999999999999999988621110                    112


Q ss_pred             eeccccch-------hhHh------hHHHHHHH---------HHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           73 IGRHSRHL-------EDLL------TMEEAVHA---------KLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        73 ~~~~~~~~-------~~~~------~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                      +|.+.|.+       .++.      ..+++++.         .+..+  |.+.... .+..+||||||||+|||||++. 
T Consensus       544 Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG-EkG~qLSGGQKQRIAIARALlr~  622 (716)
T KOG0058|consen  544 IGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVG-EKGSQLSGGQKQRIAIARALLRN  622 (716)
T ss_pred             eeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccC-CccccccchHHHHHHHHHHHhcC
Confidence            33332221       0100      01223333         33333  1221111 2346999999999999999876 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                                 .||.++...+.+.+.+.  +.|||+|.|.+..
T Consensus       623 P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLST  665 (716)
T KOG0058|consen  623 PRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLST  665 (716)
T ss_pred             CCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhH
Confidence                       59999999999988754  3799999998753

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.93  E-value=1.2e-25  Score=169.76  Aligned_cols=138  Identities=25%  Similarity=0.280  Sum_probs=93.3

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c-----------------eeeecc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K-----------------LRIGRH   76 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~-----------------~~~~~~   76 (158)
                      +.++ +++|+.. ..+++++||+|++|++++|+||||||||||+++|++....   .                 ..+++.
T Consensus         3 ~~~l-~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~   80 (236)
T cd03253           3 FENV-TFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV   80 (236)
T ss_pred             EEEE-EEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence            3344 8888643 3489999999999999999999999999999999964321   0                 013333


Q ss_pred             ccch-------hhHhh------HHHHHHHHHHHcC-----------CCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           77 SRHL-------EDLLT------MEEAVHAKLRKFG-----------LPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        77 ~~~~-------~~~~~------~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      ++..       .+.+.      ..+.+...++.++           +..... +++.+||||||||++||++++.     
T Consensus        81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~LS~G~~~rl~la~aL~~~p~ll  159 (236)
T cd03253          81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVG-ERGLKLSGGEKQRVAIARAILKNPPIL  159 (236)
T ss_pred             CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            2221       00000      0111222222222           222222 3467999999999999988775     


Q ss_pred             -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                             +||+.+...+.+.+.+.  +.|||++||+.++
T Consensus       160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~  198 (236)
T cd03253         160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLST  198 (236)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence                   69999999998888665  4699999999764

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=4.6e-26  Score=188.81  Aligned_cols=127  Identities=20%  Similarity=0.197  Sum_probs=94.0

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccch---------
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRHL---------   80 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~~---------   80 (158)
                      .+++++||+|.+||+++|+||||||||||+++|++....                     +..+++.++..         
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~  346 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH  346 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence            379999999999999999999999999999999864210                     01123333221         


Q ss_pred             --hhHh------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538           81 --EDLL------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------H  128 (158)
Q Consensus        81 --~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~  128 (158)
                        .+.+                  ...+.+.++++.+++.....++++.+|||||||||+||++++.            +
T Consensus       347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~  426 (501)
T PRK11288        347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG  426 (501)
T ss_pred             CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence              0110                  0113466788999995323346789999999999999988764            7


Q ss_pred             CCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ||+.++..+.+.+.++   +.|||+||||+++
T Consensus       427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~  458 (501)
T PRK11288        427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLPE  458 (501)
T ss_pred             CCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence            9999999998887543   6799999999864

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.93  E-value=8.6e-26  Score=173.52  Aligned_cols=127  Identities=17%  Similarity=0.199  Sum_probs=92.6

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---ee----eecccc--------chhhHh---------h
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LR----IGRHSR--------HLEDLL---------T   85 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~----~~~~~~--------~~~~~~---------~   85 (158)
                      .++++++||+|++|++++|+||||||||||+++|++.....   +.    .++..+        ...+.+         .
T Consensus        37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~  116 (264)
T PRK13546         37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFK  116 (264)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCC
Confidence            46899999999999999999999999999999999763211   10    111000        011111         0


Q ss_pred             ---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCe
Q 044538           86 ---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGG  147 (158)
Q Consensus        86 ---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~t  147 (158)
                         ..+.+..+++.+++.+... +++.+|||||+||++||++++.            +||+.+...+.+.+.++   +.|
T Consensus       117 ~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~t  195 (264)
T PRK13546        117 RKEIKAMTPKIIEFSELGEFIY-QPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKT  195 (264)
T ss_pred             HHHHHHHHHHHHHHcCCchhhc-CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCE
Confidence               1123445677888876544 5778999999999999988775            69999998888887654   579


Q ss_pred             EEEEeecCCC
Q 044538          148 VVLVSHDSRL  157 (158)
Q Consensus       148 vi~vtHd~~~  157 (158)
                      +|++|||.++
T Consensus       196 iIiisH~~~~  205 (264)
T PRK13546        196 IFFVSHNLGQ  205 (264)
T ss_pred             EEEEcCCHHH
Confidence            9999999754

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.93  E-value=8e-26  Score=190.39  Aligned_cols=139  Identities=19%  Similarity=0.233  Sum_probs=98.8

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------------------eeeec
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------------LRIGR   75 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------------~~~~~   75 (158)
                      +.+.++ ++.|..+ +++|+|+||++++|+.++|+||||||||||+++|++.....                   ..+++
T Consensus       350 i~~~~v-sf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~  427 (588)
T PRK11174        350 IEAEDL-EILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSW  427 (588)
T ss_pred             EEEEee-EEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEE
Confidence            455555 7655443 46899999999999999999999999999999998654211                   12344


Q ss_pred             cccch-------hhHhh------HHHHHHHHHHHcCCCC-----------CCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           76 HSRHL-------EDLLT------MEEAVHAKLRKFGLPG-----------HNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        76 ~~~~~-------~~~~~------~~~~~~~~l~~~~l~~-----------~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      .+|..       .++..      .++++.++++..++.+           ... .....||||||||++||||++.    
T Consensus       428 v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vg-e~G~~LSGGQrQRialARAll~~~~I  506 (588)
T PRK11174        428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG-DQAAGLSVGQAQRLALARALLQPCQL  506 (588)
T ss_pred             ecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccc-cCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            44431       11111      1345556666555432           111 1235799999999999999875    


Q ss_pred             --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                              +||.++...+.+.+.+.  +.|+|+|||+++
T Consensus       507 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~  545 (588)
T PRK11174        507 LLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE  545 (588)
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChH
Confidence                    69999999999999876  379999999875

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=8.8e-26  Score=159.56  Aligned_cols=133  Identities=23%  Similarity=0.331  Sum_probs=99.8

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------------ceeeec
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------------KLRIGR   75 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------------~~~~~~   75 (158)
                      ++.|+..  .+|-||+|+.+.||.+.++||||+|||||+|.+.....+                          +..+|.
T Consensus         9 n~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgm   86 (242)
T COG4161           9 NCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGM   86 (242)
T ss_pred             ccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhh
Confidence            7788765  479999999999999999999999999999998732210                          011232


Q ss_pred             cccc--hhhHhh-------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538           76 HSRH--LEDLLT-------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        76 ~~~~--~~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                      .++.  +++.++                   ...++.++++++.+.+..++.| -.|||||+|||+||||++.       
T Consensus        87 vfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-lhlsggqqqrvaiaralmmkpqvllf  165 (242)
T COG4161          87 VFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-LHLSGGQQQRVAIARALMMEPQVLLF  165 (242)
T ss_pred             hhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-eecccchhhhHHHHHHHhcCCcEEee
Confidence            2221  112111                   1245678899999998877655 6799999999999999886       


Q ss_pred             -----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 -----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                           .|||+-..++.++++++   +.|-++|||..++
T Consensus       166 deptaaldpeitaqvv~iikel~~tgitqvivthev~v  203 (242)
T COG4161         166 DEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV  203 (242)
T ss_pred             cCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH
Confidence                 58999888888888776   4688999998764

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.93  E-value=6.2e-26  Score=167.72  Aligned_cols=126  Identities=22%  Similarity=0.245  Sum_probs=88.1

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---hcceee--------------------
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---RQKLRI--------------------   73 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---~~~~~~--------------------   73 (158)
                      +.++ ++.|++  ..+++++||++.+||+++|+||||||||||+++|++..   .....+                    
T Consensus         3 ~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (200)
T cd03217           3 IKDL-HVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI   79 (200)
T ss_pred             EEEE-EEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence            3444 888874  35899999999999999999999999999999999862   111111                    


Q ss_pred             eccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHH
Q 044538           74 GRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL  141 (158)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l  141 (158)
                      ++.++...  ....-.+.+.+          +....+|||||+||++||++++.            +||+.+...+.+.+
T Consensus        80 ~~v~q~~~--~~~~~~~~~~l----------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L  147 (200)
T cd03217          80 FLAFQYPP--EIPGVKNADFL----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI  147 (200)
T ss_pred             EEeecChh--hccCccHHHHH----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence            11111100  00000111111          12235899999999999998775            69999999999888


Q ss_pred             hhc---CCeEEEEeecCCC
Q 044538          142 DEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       142 ~~~---~~tvi~vtHd~~~  157 (158)
                      +++   +.|+|++|||+++
T Consensus       148 ~~~~~~~~tiii~sh~~~~  166 (200)
T cd03217         148 NKLREEGKSVLIITHYQRL  166 (200)
T ss_pred             HHHHHCCCEEEEEecCHHH
Confidence            765   4799999999753

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.93  E-value=5.1e-26  Score=208.83  Aligned_cols=142  Identities=20%  Similarity=0.308  Sum_probs=108.0

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIG   74 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~   74 (158)
                      ++.+.++ ++.|++..+.+++|+||+|++||++||+||||||||||+++|+|....                   +..+|
T Consensus      1937 ~L~v~nL-sK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257      1937 ILRLNEL-TKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred             eEEEEEE-EEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence            5666665 888875434689999999999999999999999999999999964211                   11245


Q ss_pred             ccccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538           75 RHSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        75 ~~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                      +.+|..  .      +.+            ...+.+.++++.+++.+..+ +++.+||||||||++||+|++.       
T Consensus      2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-k~~~~LSGGqKqRLslA~ALi~~P~VLLL 2094 (2272)
T TIGR01257      2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-RLAGTYSGGNKRKLSTAIALIGCPPLVLL 2094 (2272)
T ss_pred             EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            544431  1      111            01234567889999976554 6779999999999999998875       


Q ss_pred             -----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 -----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                           +||+.+++.+++.+++.   +.|||++||++++
T Consensus      2095 DEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee 2132 (2272)
T TIGR01257      2095 DEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132 (2272)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence                 79999999999988764   4699999999864

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.93  E-value=7.7e-26  Score=184.27  Aligned_cols=142  Identities=22%  Similarity=0.266  Sum_probs=106.0

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---------------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---------------------   70 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---------------------   70 (158)
                      .+++++.++ +++|+..  .+|+++||++.+||+++|+|.||||||||+|+|+|...+.                     
T Consensus         6 ~~ll~~~~i-~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~   82 (500)
T COG1129           6 PPLLELRGI-SKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA   82 (500)
T ss_pred             cceeeeecc-eEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHh
Confidence            456777776 9999875  5899999999999999999999999999999999632210                     


Q ss_pred             eeeeccccc------------------------hhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           71 LRIGRHSRH------------------------LEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        71 ~~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                      ..+....|.                        +.+...+.+++.++++.+++... .+.++.+||.||||.|+||+|+.
T Consensus        83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~  161 (500)
T COG1129          83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALS  161 (500)
T ss_pred             CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHh
Confidence            011111111                        11222345678889999998633 44688999999999999999876


Q ss_pred             h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      .            .|+......+++.++++   +.+||+|||.+++
T Consensus       162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~E  207 (500)
T COG1129         162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDE  207 (500)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence            5            47777777777766554   5799999999865

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.93  E-value=6.2e-26  Score=164.84  Aligned_cols=136  Identities=32%  Similarity=0.382  Sum_probs=86.5

Q ss_pred             heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhh-HHHHHHHHHH
Q 044538           18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLT-MEEAVHAKLR   95 (158)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~l~   95 (158)
                      .++ ++.|+.  .++++++||++++|++++|+||||||||||+++|++..... ..+-........ .. ........+.
T Consensus         4 ~~l-~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~~~i~   79 (178)
T cd03229           4 KNV-SKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTD-LEDELPPLRRRIG   79 (178)
T ss_pred             EEE-EEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-cchhHHHHhhcEE
Confidence            344 788864  35899999999999999999999999999999999764321 111111111100 00 0000000000


Q ss_pred             ----HcCCCCC-CCCCCCC-CCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEee
Q 044538           96 ----KFGLPGH-NHLTPIA-NLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSH  153 (158)
Q Consensus        96 ----~~~l~~~-~~~~~~~-~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtH  153 (158)
                          ...+... ....... .|||||+||++||++++.            +||+.++..+.+.++++    +.|+|++||
T Consensus        80 ~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH  159 (178)
T cd03229          80 MVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH  159 (178)
T ss_pred             EEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence                0000000 0000011 199999999999988775            69999999999888664    479999999


Q ss_pred             cCCC
Q 044538          154 DSRL  157 (158)
Q Consensus       154 d~~~  157 (158)
                      |.++
T Consensus       160 ~~~~  163 (178)
T cd03229         160 DLDE  163 (178)
T ss_pred             CHHH
Confidence            9754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.1e-25  Score=171.48  Aligned_cols=140  Identities=21%  Similarity=0.309  Sum_probs=99.4

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce---------------
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL---------------   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~---------------   71 (158)
                      +.+.++ ++.|+.  .++++++||+|.+|++++|+||||||||||+++|++...        ..+               
T Consensus         4 l~~~~v-~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~   80 (250)
T PRK14266          4 IEVENL-NTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV   80 (250)
T ss_pred             EEEEeE-EEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence            344444 888864  358999999999999999999999999999999986421        100               


Q ss_pred             ----eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHHH
Q 044538           72 ----RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTLV  124 (158)
Q Consensus        72 ----~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~~  124 (158)
                          .+++.++..       .+.+.             ..+.+.++++.+++...   ..++++.+|||||+||++||++
T Consensus        81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara  160 (250)
T PRK14266         81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIART  160 (250)
T ss_pred             HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHH
Confidence                123322210       00000             11335566778887421   1235678999999999999998


Q ss_pred             Hhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          125 SMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       125 ~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                      ++.            +||+.+...+.+.+++.  +.|||++|||+++
T Consensus       161 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~  207 (250)
T PRK14266        161 IAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQ  207 (250)
T ss_pred             HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence            775            69999999999988765  3699999999754

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.93  E-value=9.2e-26  Score=187.40  Aligned_cols=125  Identities=14%  Similarity=0.175  Sum_probs=94.9

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccch-----h----
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRHL-----E----   81 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~~-----~----   81 (158)
                      +|+++||+|++|++++|+||||||||||+++|++....                     +..+++.++..     .    
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t  357 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP  357 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence            58999999999999999999999999999999864210                     01244444321     0    


Q ss_pred             --hHh---------------hHHHHHHHHHHHcCCC-CCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538           82 --DLL---------------TMEEAVHAKLRKFGLP-GHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT  131 (158)
Q Consensus        82 --~~~---------------~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~  131 (158)
                        +.+               ...+.+.++++.+++. ... ++++.+||||||||++||++++.            +||+
T Consensus       358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~  436 (510)
T PRK15439        358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHA-EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV  436 (510)
T ss_pred             HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCc-cCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcCh
Confidence              000               0113456788999996 444 46779999999999999988775            6999


Q ss_pred             HHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          132 QSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       132 ~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      .++..+.+.++++   +.|||+||||+++
T Consensus       437 ~~~~~l~~~l~~l~~~g~tiIivsHd~~~  465 (510)
T PRK15439        437 SARNDIYQLIRSIAAQNVAVLFISSDLEE  465 (510)
T ss_pred             hHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence            9999999888764   5799999999864

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.93  E-value=1e-25  Score=171.60  Aligned_cols=125  Identities=27%  Similarity=0.328  Sum_probs=94.1

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------------------eeeeccccch--------hhHh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------------LRIGRHSRHL--------EDLL   84 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------------~~~~~~~~~~--------~~~~   84 (158)
                      +|+++||++++|++++|+||||||||||+++|++.....                   ..+++.++..        .+.+
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl   90 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL   90 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence            689999999999999999999999999999998643110                   0133333221        0100


Q ss_pred             -----------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------------------CCCHHHH
Q 044538           85 -----------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------------------HLDTQSI  134 (158)
Q Consensus        85 -----------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------------------~lD~~~~  134 (158)
                                 ...+++.++++.+++....+ +++.+||||||||++||++++.                   +||+.++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~  169 (248)
T PRK03695         91 TLHQPDKTRTEAVASALNEVAEALGLDDKLG-RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ  169 (248)
T ss_pred             HhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-CCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHH
Confidence                       01235678899999976544 5679999999999999999872                   5899999


Q ss_pred             HHHHHHHhhc---CCeEEEEeecCCC
Q 044538          135 VAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       135 ~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ..+.+.++++   +.|||++|||+++
T Consensus       170 ~~l~~~L~~~~~~~~tvi~~sH~~~~  195 (248)
T PRK03695        170 AALDRLLSELCQQGIAVVMSSHDLNH  195 (248)
T ss_pred             HHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            9999888765   4699999999763

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.93  E-value=1.9e-25  Score=188.26  Aligned_cols=140  Identities=24%  Similarity=0.294  Sum_probs=102.2

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~   74 (158)
                      +++.++ +|+|+.. .++|+|+||++++||.++|+|+||||||||+++|++...+.                    ..++
T Consensus       341 i~~~~v-~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~  418 (592)
T PRK10790        341 IDIDNV-SFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA  418 (592)
T ss_pred             EEEEEE-EEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence            555565 9999753 45899999999999999999999999999999998643211                    1234


Q ss_pred             ccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh-----
Q 044538           75 RHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      +.+|+.       .++..     .++++.++++.+|+.+...      +    .....||||||||++||||++.     
T Consensus       419 ~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il  498 (592)
T PRK10790        419 MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL  498 (592)
T ss_pred             EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence            444431       11111     1356667777776542111      0    1235799999999999999875     


Q ss_pred             -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                             +||+++...+.+.+++.  ++|+|+|||+++
T Consensus       499 llDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~  536 (592)
T PRK10790        499 ILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLS  536 (592)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence                   69999999999999876  479999999875

>PRK13409 putative ATPase RIL; Provisional

Probab=99.93  E-value=1.1e-25  Score=189.40  Aligned_cols=137  Identities=23%  Similarity=0.310  Sum_probs=101.4

Q ss_pred             heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e-----------------------
Q 044538           18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L-----------------------   71 (158)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~-----------------------   71 (158)
                      .+.++++|+.. ..+|++++ .+++|++++|+||||||||||+++|++...+.   +                       
T Consensus        76 ~~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~  153 (590)
T PRK13409         76 EEEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK  153 (590)
T ss_pred             ccCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence            33358888753 35799999 99999999999999999999999999643211   0                       


Q ss_pred             -------eeeccccchh-----------hHh---hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           72 -------RIGRHSRHLE-----------DLL---TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        72 -------~~~~~~~~~~-----------~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                             .+++..++..           +.+   ...+++.++++.+++....+ +++.+|||||||||+||++++.   
T Consensus       154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~qrv~ia~al~~~p~  232 (590)
T PRK13409        154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILD-RDISELSGGELQRVAIAAALLRDAD  232 (590)
T ss_pred             HHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence                   0111111110           001   11245677889999976544 6789999999999999988764   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||+..+..+.+.++++  +.|||+||||+++
T Consensus       233 lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~  273 (590)
T PRK13409        233 FYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAV  273 (590)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence                     69999999999888776  7899999999864

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.93  E-value=1.1e-25  Score=172.06  Aligned_cols=133  Identities=22%  Similarity=0.293  Sum_probs=97.1

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce---------------------------
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL---------------------------   71 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~---------------------------   71 (158)
                      +++|+... .+++++|+ +.+|++++|+||||||||||+++|++....   .+                           
T Consensus         7 ~~~y~~~~-~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~   84 (255)
T cd03236           7 VHRYGPNS-FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE   84 (255)
T ss_pred             ceeecCcc-hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhh
Confidence            88886432 58999995 999999999999999999999999964321   11                           


Q ss_pred             ---eeeccccchh-------hH-------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538           72 ---RIGRHSRHLE-------DL-------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        72 ---~~~~~~~~~~-------~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                         .+++.+++..       ..       ....+.+.++++.+++..... +++.+||||||||++||++++.       
T Consensus        85 ~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~illl  163 (255)
T cd03236          85 GDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLD-RNIDQLSGGELQRVAIAAALARDADFYFF  163 (255)
T ss_pred             cccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence               0111111100       00       011345678899999976544 5678999999999999988775       


Q ss_pred             -----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 -----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                           +||+.+...+.+.+++.   +.|||++|||+++
T Consensus       164 DEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~  201 (255)
T cd03236         164 DEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV  201 (255)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence                 69999988888777654   5799999999754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.3e-25  Score=160.36  Aligned_cols=143  Identities=20%  Similarity=0.216  Sum_probs=103.8

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------   70 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------   70 (158)
                      .+|.+.+.++ ++.|+...  -.+||||++.|||+++|+|+||||||||+++|++...+.                    
T Consensus         3 ~~PLL~V~~l-sk~Yg~~~--gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms   79 (258)
T COG4107           3 DKPLLSVSGL-SKLYGPGK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS   79 (258)
T ss_pred             CCcceeehhh-hhhhCCCc--CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence            3566666666 88887653  589999999999999999999999999999998532110                    


Q ss_pred             ---------eeeeccccchhhH-----------------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHH
Q 044538           71 ---------LRIGRHSRHLEDL-----------------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVR  118 (158)
Q Consensus        71 ---------~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr  118 (158)
                               -..|+.-|+..+-                       -...+.+.++++.+.++....+..+.++||||+||
T Consensus        80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR  159 (258)
T COG4107          80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR  159 (258)
T ss_pred             hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHH
Confidence                     0012211111110                       11235677899999997654444558999999999


Q ss_pred             HHHHHHHhh------------CCCHHHHHHHHHHHh----hcCCeEEEEeecCC
Q 044538          119 VMFTLVSMY------------HLDTQSIVAVAVTLD----EFAGGVVLVSHDSR  156 (158)
Q Consensus       119 v~ia~~~l~------------~lD~~~~~~l~~~l~----~~~~tvi~vtHd~~  156 (158)
                      +.||+-+..            +||...+..+++.++    +++.++++||||+.
T Consensus       160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~  213 (258)
T COG4107         160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA  213 (258)
T ss_pred             HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH
Confidence            999987664            689888888887775    45679999999975

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.93  E-value=1.2e-25  Score=186.22  Aligned_cols=125  Identities=19%  Similarity=0.236  Sum_probs=94.9

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccch----------
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRHL----------   80 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~~----------   80 (158)
                      +++++||+|.+||+++|+||||||||||+++|++....                     +..+++.+|..          
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t  346 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS  346 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence            69999999999999999999999999999999864210                     01244444331          


Q ss_pred             -hhHh------------------hHHHHHHHHHHHcCCC-CCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538           81 -EDLL------------------TMEEAVHAKLRKFGLP-GHNHLTPIANLSGGQKVRVMFTLVSMY------------H  128 (158)
Q Consensus        81 -~~~~------------------~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~  128 (158)
                       .+.+                  ...+++.++++.+++. ... ++++.+|||||||||+||++++.            +
T Consensus       347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~  425 (501)
T PRK10762        347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM-EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG  425 (501)
T ss_pred             HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc-cCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence             0000                  0123466788999995 444 46789999999999999998764            7


Q ss_pred             CCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ||+.++..+.+.++++   +.|||++|||+++
T Consensus       426 LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~  457 (501)
T PRK10762        426 VDVGAKKEIYQLINQFKAEGLSIILVSSEMPE  457 (501)
T ss_pred             CCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            9999999999888765   4699999999764

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.93  E-value=1.4e-25  Score=192.48  Aligned_cols=142  Identities=23%  Similarity=0.323  Sum_probs=100.3

Q ss_pred             hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538           14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~   72 (158)
                      .+++.++ +|+|++. .+++|+|+||++++||.++|+||||||||||+++|++....                    +..
T Consensus       478 ~I~~~nV-sf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  556 (711)
T TIGR00958       478 LIEFQDV-SFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ  556 (711)
T ss_pred             eEEEEEE-EEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence            3566666 9999754 24689999999999999999999999999999999864321                    112


Q ss_pred             eeccccch-------hhHhh------HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh--
Q 044538           73 IGRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        73 ~~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      +++.+|..       .++..      .++++.++++..++.+...      +    ....+||||||||++|||+++.  
T Consensus       557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p  636 (711)
T TIGR00958       557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP  636 (711)
T ss_pred             ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            34444331       11111      1356666777766543211      1    1235799999999999999875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~  156 (158)
                                +||+++...+.+.....+.|+|+|||+++
T Consensus       637 ~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~  675 (711)
T TIGR00958       637 RVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLS  675 (711)
T ss_pred             CEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHH
Confidence                      69999988888833333579999999975

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.93  E-value=4.4e-25  Score=163.42  Aligned_cols=132  Identities=20%  Similarity=0.198  Sum_probs=89.8

Q ss_pred             hhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---c-c--ee---------------
Q 044538           16 QLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---Q-K--LR---------------   72 (158)
Q Consensus        16 ~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---~-~--~~---------------   72 (158)
                      .+.++ +|.|+.+  ...+|+++||++++|++++|+||||||||||+++|++...   . .  +.               
T Consensus         5 ~~~~~-~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~   83 (202)
T cd03233           5 SWRNI-SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPG   83 (202)
T ss_pred             EEEcc-EEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcc
Confidence            34455 8999753  4568999999999999999999999999999999998643   1 1  11               


Q ss_pred             -eeccccc--hhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538           73 -IGRHSRH--LEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV  137 (158)
Q Consensus        73 -~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l  137 (158)
                       +++.++.  ....++..+.+..... ..     .++++.+|||||+||++||++++.            +||+.++..+
T Consensus        84 ~i~~~~q~~~~~~~~tv~~~l~~~~~-~~-----~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~  157 (202)
T cd03233          84 EIIYVSEEDVHFPTLTVRETLDFALR-CK-----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI  157 (202)
T ss_pred             eEEEEecccccCCCCcHHHHHhhhhh-hc-----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHH
Confidence             1222221  1111233333322111 11     234668999999999999998775            6999999999


Q ss_pred             HHHHhhc----CCeEEEEeec
Q 044538          138 AVTLDEF----AGGVVLVSHD  154 (158)
Q Consensus       138 ~~~l~~~----~~tvi~vtHd  154 (158)
                      .+.++++    +.|+|+++|+
T Consensus       158 ~~~l~~~~~~~~~t~ii~~~h  178 (202)
T cd03233         158 LKCIRTMADVLKTTTFVSLYQ  178 (202)
T ss_pred             HHHHHHHHHhCCCEEEEEEcC
Confidence            9888764    3466665543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.93  E-value=4.2e-25  Score=169.03  Aligned_cols=143  Identities=18%  Similarity=0.155  Sum_probs=98.1

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR   72 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~   72 (158)
                      +.+.+.++ ++.|+.....+++++||+|++|++++|+|+||||||||+++|++....                    +..
T Consensus        18 ~~i~~~~l-~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~   96 (257)
T cd03288          18 GEIKIHDL-CVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR   96 (257)
T ss_pred             ceEEEEEE-EEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence            35666666 888875434589999999999999999999999999999999964211                    011


Q ss_pred             eeccccch--hh-----HhhH-----HHHHHHHHH---------Hc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           73 IGRHSRHL--ED-----LLTM-----EEAVHAKLR---------KF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        73 ~~~~~~~~--~~-----~~~~-----~~~~~~~l~---------~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      +++.++..  .+     .+..     .+.+.++++         .+  +++.... .++.+|||||+||++||++++.  
T Consensus        97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p  175 (257)
T cd03288          97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT-EGGENFSVGQRQLFCLARAFVRKS  175 (257)
T ss_pred             EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEec-cCCCcCCHHHHHHHHHHHHHhcCC
Confidence            33333221  00     0000     112222223         33  3333222 3457999999999999998775  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                                +||+.+...+.+.+++.  +.|+|++||+++.
T Consensus       176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~  217 (257)
T cd03288         176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVST  217 (257)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHH
Confidence                      69999999998888764  4799999999864

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.93  E-value=3.4e-25  Score=185.18  Aligned_cols=141  Identities=23%  Similarity=0.333  Sum_probs=99.2

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~   73 (158)
                      .+.+.++ +++|+....++++|+||++++|+.++|+||||||||||++++++...+.                    ..+
T Consensus       316 ~i~~~~v-~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i  394 (544)
T TIGR01842       316 HLSVENV-TIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI  394 (544)
T ss_pred             eEEEEEE-EEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence            3566666 9999765456899999999999999999999999999999998643210                    123


Q ss_pred             eccccch-------hhHhh------HHHHHHHHHH---------Hc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHL-------EDLLT------MEEAVHAKLR---------KF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~------~~~~~~~~l~---------~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ++.+|..       .++..      .++++.++++         .+  |++.... ....+||||||||++|||+++.  
T Consensus       395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~-~~g~~LSgGq~qrl~lARall~~~  473 (544)
T TIGR01842       395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIG-PGGATLSGGQRQRIALARALYGDP  473 (544)
T ss_pred             EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccC-CCcCCCCHHHHHHHHHHHHHhcCC
Confidence            3333321       11111      1123333333         33  3333222 3457899999999999999875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                                +||+++...+.+.+.+.   +.|+|++||+.+
T Consensus       474 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~  515 (544)
T TIGR01842       474 KLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS  515 (544)
T ss_pred             CEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence                      69999999999988775   479999999975

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.93  E-value=2e-25  Score=188.02  Aligned_cols=139  Identities=27%  Similarity=0.350  Sum_probs=99.9

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~   74 (158)
                      +.+.++ +|+|+.. +++|+|+||++++|+.++|+|+||||||||++++++...+.                    ..++
T Consensus       335 I~~~~v-sf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~  412 (588)
T PRK13657        335 VEFDDV-SFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA  412 (588)
T ss_pred             EEEEEE-EEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence            555565 9999753 35899999999999999999999999999999999653211                    1234


Q ss_pred             ccccch-------hhHhh------HHHHHHHHHHHcCCCC-----------CCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           75 RHSRHL-------EDLLT------MEEAVHAKLRKFGLPG-----------HNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~-----------~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      +.+|..       .+++.      .++++..+++.+++.+           ... .....||||||||++|||+++.   
T Consensus       413 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~-~~g~~LSgGq~QRialARall~~~~  491 (588)
T PRK13657        413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVG-ERGRQLSGGERQRLAIARALLKDPP  491 (588)
T ss_pred             EEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            443321       11111      1344555666555432           111 1235799999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                               +||+.+...+.+.+.+.  +.|+|+|||+.+
T Consensus       492 iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~  531 (588)
T PRK13657        492 ILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLS  531 (588)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHH
Confidence                     69999999999988775  479999999964

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.93  E-value=2.4e-25  Score=191.08  Aligned_cols=140  Identities=23%  Similarity=0.281  Sum_probs=101.6

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~   74 (158)
                      +.+.++ +|+|+.. +++|+|+||+|++|+.++|+||||||||||+++|++...+                    +..++
T Consensus       474 I~~~~v-sf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~  551 (708)
T TIGR01193       474 IVINDV-SYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN  551 (708)
T ss_pred             EEEEEE-EEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence            556565 9999743 4689999999999999999999999999999999864321                    11244


Q ss_pred             ccccch-------hhHhh-------HHHHHHHHHHHcCCCC-----------CCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           75 RHSRHL-------EDLLT-------MEEAVHAKLRKFGLPG-----------HNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~-------~~~~~~~~l~~~~l~~-----------~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      +.+|+.       .++..       .++++.++++..++.+           ... .....||||||||++||||++.  
T Consensus       552 ~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~-e~G~~LSgGQrQRialARall~~p  630 (708)
T TIGR01193       552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS-EEGSSISGGQKQRIALARALLTDS  630 (708)
T ss_pred             EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEec-CCCCCCCHHHHHHHHHHHHHhhCC
Confidence            444431       11111       1345566666665532           111 1346799999999999999875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc-CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF-AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~-~~tvi~vtHd~~~  157 (158)
                                +||+++...+.+.+.+. +.|+|+|||+++.
T Consensus       631 ~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~  671 (708)
T TIGR01193       631 KVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSV  671 (708)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHH
Confidence                      69999999999998875 4799999999753

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.92  E-value=5.2e-25  Score=184.98  Aligned_cols=142  Identities=24%  Similarity=0.342  Sum_probs=101.5

Q ss_pred             hhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e-----------------ee
Q 044538           15 LQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L-----------------RI   73 (158)
Q Consensus        15 l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~-----------------~~   73 (158)
                      +.+.++ ++.|+... +++|+|+||++++||.++|+||||||||||+++|++...+.   +                 .+
T Consensus       338 i~~~~v-~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i  416 (576)
T TIGR02204       338 IEFEQV-NFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM  416 (576)
T ss_pred             EEEEEE-EEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence            556565 99997532 46899999999999999999999999999999999753211   1                 23


Q ss_pred             eccccch-------hhHhh------HHHHHHHHHHHcCCCCCC-------C---CCCCCCCChHHHHHHHHHHHHhh---
Q 044538           74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHN-------H---LTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~-------~---~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      ++.+|+.       .+++.      .++++.++++.+++.+..       +   ......||||||||++|||+++.   
T Consensus       417 ~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~  496 (576)
T TIGR02204       417 ALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP  496 (576)
T ss_pred             eEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence            4444331       11111      134566666666553211       0   11235799999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||+.+...+.+.+++.  +.|+|+|||+.+.
T Consensus       497 ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~  537 (576)
T TIGR02204       497 ILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLAT  537 (576)
T ss_pred             eEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHH
Confidence                     69999999999888876  4799999998753

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.92  E-value=8e-25  Score=183.87  Aligned_cols=141  Identities=21%  Similarity=0.310  Sum_probs=100.2

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~   74 (158)
                      +.+.++ +++|++...++|+++||++++|++++|+||||||||||+++|++...+.                    ..++
T Consensus       314 I~~~~v-~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~  392 (569)
T PRK10789        314 LDVNIR-QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA  392 (569)
T ss_pred             EEEEEE-EEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence            455555 9999765456899999999999999999999999999999998643210                    1123


Q ss_pred             ccccch-------hhHhh------HHHHHHHHHHHcCCCC-----------CCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           75 RHSRHL-------EDLLT------MEEAVHAKLRKFGLPG-----------HNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~-----------~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      +.+|..       .++..      .++++.++++..++.+           ... .....||||||||++|||+++.   
T Consensus       393 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSgGq~qRi~lARall~~~~  471 (569)
T PRK10789        393 VVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVG-ERGVMLSGGQKQRISIARALLLNAE  471 (569)
T ss_pred             EEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            333221       11111      1244555566555432           111 2346799999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||+++...+.+.+++.  +.|+|+|||+++.
T Consensus       472 illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~  512 (569)
T PRK10789        472 ILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSA  512 (569)
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhH
Confidence                     69999999999999775  4799999999753

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.92  E-value=1.7e-25  Score=162.39  Aligned_cols=111  Identities=23%  Similarity=0.219  Sum_probs=80.8

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHHHcCCC
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLRKFGLP  100 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  100 (158)
                      ++.|++.  .++++ +|++++||+++|+||||||||||+++|++..... ..+-.....                 ++..
T Consensus         7 ~~~~~~~--~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------------i~~~   66 (177)
T cd03222           7 VKRYGVF--FLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------------PVYK   66 (177)
T ss_pred             EEEECCE--EEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------------EEEE
Confidence            7788653  46777 4999999999999999999999999999865321 111111000                 1110


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          101 GHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       101 ~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .   ...  .||||||||++||++++.            +||+.++..+.+.++++    +.|+|++|||+++
T Consensus        67 ~---q~~--~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~  134 (177)
T cd03222          67 P---QYI--DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV  134 (177)
T ss_pred             c---ccC--CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence            0   001  299999999999988775            69999999888888664    3799999999754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.92  E-value=5.4e-25  Score=184.40  Aligned_cols=141  Identities=20%  Similarity=0.244  Sum_probs=100.9

Q ss_pred             hhhheeeeEEcCCC---CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce-----------------
Q 044538           15 LQLIEVISFSYPNL---QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL-----------------   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~---~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~-----------------   71 (158)
                      +++.++ +++|++.   ..++|+|+||++++|++++|+||||||||||+++|++...+   .+                 
T Consensus       338 i~~~~v-~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~  416 (555)
T TIGR01194       338 IELKDV-HMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD  416 (555)
T ss_pred             EEEEEE-EEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence            555565 9999753   23589999999999999999999999999999999864321   11                 


Q ss_pred             eeeccccch--h-h----Hh---hHHHHHHHHHHHcCCCCCCCCC-----CCCCCChHHHHHHHHHHHHhh---------
Q 044538           72 RIGRHSRHL--E-D----LL---TMEEAVHAKLRKFGLPGHNHLT-----PIANLSGGQKVRVMFTLVSMY---------  127 (158)
Q Consensus        72 ~~~~~~~~~--~-~----~~---~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGqkqrv~ia~~~l~---------  127 (158)
                      .+++.+|+.  . .    ..   ..++++.++++.+++.+.....     ....||||||||++|||+++.         
T Consensus       417 ~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE  496 (555)
T TIGR01194       417 LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE  496 (555)
T ss_pred             hCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            122333321  0 0    00   1235677889999887543221     125799999999999999875         


Q ss_pred             ---CCCHHHHHHHHHHH-h---hcCCeEEEEeecCC
Q 044538          128 ---HLDTQSIVAVAVTL-D---EFAGGVVLVSHDSR  156 (158)
Q Consensus       128 ---~lD~~~~~~l~~~l-~---~~~~tvi~vtHd~~  156 (158)
                         +||+++...+.+.+ +   ..+.|+|+|||+++
T Consensus       497 ~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~  532 (555)
T TIGR01194       497 WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ  532 (555)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence               69999999887654 2   23689999999974

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.92  E-value=4.9e-25  Score=174.14  Aligned_cols=144  Identities=19%  Similarity=0.243  Sum_probs=103.7

Q ss_pred             hhhhhheeeeEEcCCC---------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------------
Q 044538           13 PMLQLIEVISFSYPNL---------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------   70 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~---------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------   70 (158)
                      +.++..++ .++|+-.         ...+++++||++.+|+.+||+|+||||||||-.++.......             
T Consensus       275 ~ll~~~~v-~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~  353 (534)
T COG4172         275 VLLEVEDL-RVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGL  353 (534)
T ss_pred             ceEEecce-EEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccccc
Confidence            35555555 7777421         124789999999999999999999999999987776321110             


Q ss_pred             ---------eeeeccccchh----hHh--------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHH
Q 044538           71 ---------LRIGRHSRHLE----DLL--------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKV  117 (158)
Q Consensus        71 ---------~~~~~~~~~~~----~~~--------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  117 (158)
                               ..+..++|+.+    +.+                    ..++++.++++.+|+++....++++++||||||
T Consensus       354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ  433 (534)
T COG4172         354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ  433 (534)
T ss_pred             ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh
Confidence                     01111222211    111                    123678889999999987777888999999999


Q ss_pred             HHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          118 RVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       118 rv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      |++||||+..            .||...+.+++++|+++    +.+-+|||||+..
T Consensus       434 RIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V  489 (534)
T COG4172         434 RIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV  489 (534)
T ss_pred             HHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH
Confidence            9999999765            58888888888887654    4689999999753

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.92  E-value=8.2e-25  Score=183.03  Aligned_cols=141  Identities=23%  Similarity=0.286  Sum_probs=101.7

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+.+.++ +|+|+.. .++|+|+||++++|+.++|+||||||||||+++|++...+                    +..+
T Consensus       322 ~i~~~~v-~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  399 (547)
T PRK10522        322 TLELRNV-TFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF  399 (547)
T ss_pred             eEEEEEE-EEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence            3556665 9999753 3589999999999999999999999999999999964321                    0123


Q ss_pred             eccccch--hh-Hh------hHHHHHHHHHHHcCCCCCCCC--C--CCCCCChHHHHHHHHHHHHhh------------C
Q 044538           74 GRHSRHL--ED-LL------TMEEAVHAKLRKFGLPGHNHL--T--PIANLSGGQKVRVMFTLVSMY------------H  128 (158)
Q Consensus        74 ~~~~~~~--~~-~~------~~~~~~~~~l~~~~l~~~~~~--~--~~~~LSgGqkqrv~ia~~~l~------------~  128 (158)
                      ++.+|+.  .+ ..      ..++.+.+.++.+++......  .  ...+||||||||++|||+++.            +
T Consensus       400 ~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~  479 (547)
T PRK10522        400 SAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAAD  479 (547)
T ss_pred             EEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            3333321  11 00      123456778888888653321  1  135899999999999999875            6


Q ss_pred             CCHHHHHHHHHHHhh----cCCeEEEEeecCC
Q 044538          129 LDTQSIVAVAVTLDE----FAGGVVLVSHDSR  156 (158)
Q Consensus       129 lD~~~~~~l~~~l~~----~~~tvi~vtHd~~  156 (158)
                      ||+++...+.+.+.+    .+.|+|+|||+.+
T Consensus       480 LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~  511 (547)
T PRK10522        480 QDPHFRREFYQVLLPLLQEMGKTIFAISHDDH  511 (547)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEEechH
Confidence            999999988877753    2579999999864

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.92  E-value=4.8e-25  Score=174.15  Aligned_cols=145  Identities=21%  Similarity=0.288  Sum_probs=103.2

Q ss_pred             chhhhhheeeeEEcC--CCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------
Q 044538           12 SPMLQLIEVISFSYP--NLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------   69 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~--~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------   69 (158)
                      .+.+.+.|+ ++.|.  ++...++++|||++.+||.+||+|+||||||-..+.+++....                    
T Consensus         4 ~~lL~v~nL-sV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~   82 (534)
T COG4172           4 MPLLSIRNL-SVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA   82 (534)
T ss_pred             Ccceeeecc-EEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence            456666665 77774  4455789999999999999999999999999766555432110                    


Q ss_pred             ------c---eeeeccccchh----hHh-------------------hHHHHHHHHHHHcCCCCCCC--CCCCCCCChHH
Q 044538           70 ------K---LRIGRHSRHLE----DLL-------------------TMEEAVHAKLRKFGLPGHNH--LTPIANLSGGQ  115 (158)
Q Consensus        70 ------~---~~~~~~~~~~~----~~~-------------------~~~~~~~~~l~~~~l~~~~~--~~~~~~LSgGq  115 (158)
                            .   -.++..+|...    +..                   ..++++.++++.+|+++...  +.++++|||||
T Consensus        83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq  162 (534)
T COG4172          83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ  162 (534)
T ss_pred             CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence                  0   01233333211    111                   12366788999999976322  24569999999


Q ss_pred             HHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          116 KVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       116 kqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      ||||.||+|+.+            .||...+.+|+++|+++    +.++++||||+..
T Consensus       163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i  220 (534)
T COG4172         163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI  220 (534)
T ss_pred             hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH
Confidence            999999988775            58888888888888654    6899999999864

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.92  E-value=5.6e-25  Score=170.42  Aligned_cols=140  Identities=19%  Similarity=0.206  Sum_probs=92.7

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e----eeeccccch-----
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L----RIGRHSRHL-----   80 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~----~~~~~~~~~-----   80 (158)
                      +.+.+.++ ++.  .  ..+|+++||+|++|++++|+||||||||||+++|++.....   +    .+++.++..     
T Consensus        38 ~~l~i~nl-s~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~  112 (282)
T cd03291          38 NNLFFSNL-CLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPG  112 (282)
T ss_pred             CeEEEEEE-EEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccccccc
Confidence            34565555 553  2  35899999999999999999999999999999999764321   1    134433321     


Q ss_pred             --hhHhh-----HHHHHHHHHHHcCCCCC----------CCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538           81 --EDLLT-----MEEAVHAKLRKFGLPGH----------NHLTPIANLSGGQKVRVMFTLVSMY------------HLDT  131 (158)
Q Consensus        81 --~~~~~-----~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~  131 (158)
                        .+.+.     ....+...++.+++...          ....++.+|||||+||++||++++.            +||+
T Consensus       113 tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~  192 (282)
T cd03291         113 TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV  192 (282)
T ss_pred             CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence              11110     01122333444444211          0112357999999999999988775            6999


Q ss_pred             HHHHHHHHHH-hhc--CCeEEEEeecCCC
Q 044538          132 QSIVAVAVTL-DEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       132 ~~~~~l~~~l-~~~--~~tvi~vtHd~~~  157 (158)
                      .+...+.+.+ ++.  +.|||++|||+++
T Consensus       193 ~~~~~l~~~ll~~~~~~~tIiiisH~~~~  221 (282)
T cd03291         193 FTEKEIFESCVCKLMANKTRILVTSKMEH  221 (282)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEeCChHH
Confidence            9988887643 332  5799999999864

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.92  E-value=4.5e-25  Score=189.02  Aligned_cols=141  Identities=26%  Similarity=0.327  Sum_probs=101.4

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c-----------------eeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K-----------------LRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~-----------------~~~~   74 (158)
                      +.+.++ +|+|+...+++|+|+||++++|+.++|+|+||||||||+++|++...+   .                 ..++
T Consensus       456 i~~~~v-sf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~  534 (694)
T TIGR01846       456 ITFENI-RFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG  534 (694)
T ss_pred             EEEEEE-EEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence            556666 999976545689999999999999999999999999999999964321   1                 1133


Q ss_pred             ccccch-------hhHhh------HHHHHHHHHHHcCCC-----------CCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           75 RHSRHL-------EDLLT------MEEAVHAKLRKFGLP-----------GHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~l~-----------~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      +.+|+.       .+++.      .++++.++++..++.           .... .....||||||||++|||+++.   
T Consensus       535 ~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~-~~g~~LSgGq~qri~lARall~~~~  613 (694)
T TIGR01846       535 VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPR  613 (694)
T ss_pred             EEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEec-CCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            333321       11111      124455555555443           2222 2346899999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||+.+...+.+.+++.  +.|+|+|||+++.
T Consensus       614 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~  654 (694)
T TIGR01846       614 ILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLST  654 (694)
T ss_pred             EEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHH
Confidence                     69999999999999876  4799999999754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=3.6e-25  Score=164.98  Aligned_cols=140  Identities=21%  Similarity=0.341  Sum_probs=105.1

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------ceeeeccc
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------KLRIGRHS   77 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------~~~~~~~~   77 (158)
                      ++++.++ +++|+..  .+++|+||++++|+++|++|||||||||++|+|.+....                +-++||.+
T Consensus         2 ~L~ie~v-tK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP   78 (300)
T COG4152           2 ALEIEGV-TKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP   78 (300)
T ss_pred             ceEEecc-hhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence            3455555 8888754  589999999999999999999999999999999864221                12355544


Q ss_pred             cc--------hhhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538           78 RH--------LEDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------  127 (158)
Q Consensus        78 ~~--------~~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------  127 (158)
                      ..        ..+.+            ....++..+++++++..... +++.+||-|++|++.+.++++.          
T Consensus        79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~-~kIk~LSKGnqQKIQfisaviHePeLlILDEP  157 (300)
T COG4152          79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT-KKIKELSKGNQQKIQFISAVIHEPELLILDEP  157 (300)
T ss_pred             hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccccccc-chHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence            21        11111            12356778999999988765 5789999999999999666543          


Q ss_pred             --CCCHHHHHHHHHHHhh---cCCeEEEEeecCCC
Q 044538          128 --HLDTQSIVAVAVTLDE---FAGGVVLVSHDSRL  157 (158)
Q Consensus       128 --~lD~~~~~~l~~~l~~---~~~tvi~vtHd~~~  157 (158)
                        +|||.+.+.+.+.+.+   .+.|||++||.|+.
T Consensus       158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~  192 (300)
T COG4152         158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH  192 (300)
T ss_pred             ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHH
Confidence              7999998888777654   46899999999864

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.92  E-value=1.1e-24  Score=183.66  Aligned_cols=140  Identities=21%  Similarity=0.295  Sum_probs=97.8

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c-----------------eeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K-----------------LRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~-----------------~~~~   74 (158)
                      +.+.++ +++|++.. ++++|+||++++|++++|+||||||||||+++|++...+   .                 ..++
T Consensus       335 i~~~~v-~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  412 (585)
T TIGR01192       335 VEFRHI-TFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA  412 (585)
T ss_pred             EEEEEE-EEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence            555565 89997543 579999999999999999999999999999999864321   0                 1133


Q ss_pred             ccccch-------hhHhh------HHHHHHHHHHHcCC-----------CCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           75 RHSRHL-------EDLLT------MEEAVHAKLRKFGL-----------PGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      +.+|..       .+++.      .++++.++++..++           +.... .....||||||||++|||+++.   
T Consensus       413 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~-~~~~~LSgGq~qrl~lARall~~p~  491 (585)
T TIGR01192       413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG-ERGNRLSGGERQRLAIARAILKNAP  491 (585)
T ss_pred             EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            333321       11111      12333344443332           22222 3456899999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||+.+...+.+.+.+.  +.|+|+|||+.+.
T Consensus       492 ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~  532 (585)
T TIGR01192       492 ILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLST  532 (585)
T ss_pred             EEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHH
Confidence                     69999999999998775  4799999999753

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=1.1e-25  Score=162.88  Aligned_cols=142  Identities=24%  Similarity=0.357  Sum_probs=101.4

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc----------------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK----------------------   70 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~----------------------   70 (158)
                      +++.+.++ +++|++-  .+++++||++.+||.-+|||||||||||++++|++..++.                      
T Consensus         4 ~iL~~~~v-sVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr   80 (249)
T COG4674           4 IILYLDGV-SVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR   80 (249)
T ss_pred             ceEEEece-EEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHH
Confidence            45666666 9999875  3899999999999999999999999999999998643211                      


Q ss_pred             eeeeccccch--------hhHh--------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538           71 LRIGRHSRHL--------EDLL--------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        71 ~~~~~~~~~~--------~~~~--------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia  122 (158)
                      ..+|+.+|.+        .+++                    ...+++.++|+..|+.+..+ +....||.|||||+.|+
T Consensus        81 ~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-~~A~~LSHGqKQwLEIG  159 (249)
T COG4674          81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-RLAALLSHGQKQWLEIG  159 (249)
T ss_pred             hccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-hhhhhhccchhhhhhhh
Confidence            1233333211        1111                    11257888999999988665 56789999999999997


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRLI  158 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~  158 (158)
                      +.++.            ++-.+.....-++++...  ++|++|.|||+|+
T Consensus       160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fv  209 (249)
T COG4674         160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFV  209 (249)
T ss_pred             eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHH
Confidence            54443            233444555555555543  6999999999874

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.92  E-value=2.1e-25  Score=180.91  Aligned_cols=146  Identities=38%  Similarity=0.684  Sum_probs=115.7

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcce---------eeeccccchh
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKL---------RIGRHSRHLE   81 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~---------~~~~~~~~~~   81 (158)
                      +.|.+.+.++ +|.|+.+. .++++++|-+..++.+++|||||||||||++++.+...+..         .++++.|+..
T Consensus       386 p~pvi~~~nv-~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~  463 (614)
T KOG0927|consen  386 PPPVIMVQNV-SFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLA  463 (614)
T ss_pred             CCCeEEEecc-ccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhH
Confidence            4556666666 99998765 67899999999999999999999999999999987543321         2333323211


Q ss_pred             hH--------------h---hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538           82 DL--------------L---TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ  132 (158)
Q Consensus        82 ~~--------------~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~  132 (158)
                      +.              +   ...+.++.++.+||+.......|+++||+|||.||++|+.++.            +||.+
T Consensus       464 e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~  543 (614)
T KOG0927|consen  464 EQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIE  543 (614)
T ss_pred             hhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCch
Confidence            11              1   1236678899999999777778999999999999999877653            79999


Q ss_pred             HHHHHHHHHhhcCCeEEEEeecCCCC
Q 044538          133 SIVAVAVTLDEFAGGVVLVSHDSRLI  158 (158)
Q Consensus       133 ~~~~l~~~l~~~~~tvi~vtHd~~~~  158 (158)
                      ++..+-+.|.++.++||+||||..++
T Consensus       544 tid~laeaiNe~~Ggvv~vSHDfrlI  569 (614)
T KOG0927|consen  544 TIDALAEAINEFPGGVVLVSHDFRLI  569 (614)
T ss_pred             hHHHHHHHHhccCCceeeeechhhHH
Confidence            99999999999999999999998753

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.9e-24  Score=154.48  Aligned_cols=131  Identities=24%  Similarity=0.374  Sum_probs=96.7

Q ss_pred             EcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---eeee-----cccc----c------------
Q 044538           24 SYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LRIG-----RHSR----H------------   79 (158)
Q Consensus        24 ~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~~~-----~~~~----~------------   79 (158)
                      ++..+...+|.++||++.+||.+-|.||||||||||+|+++|...+.   +.+.     ....    .            
T Consensus         9 ~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~   88 (209)
T COG4133           9 SCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKT   88 (209)
T ss_pred             hhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccc
Confidence            34444456899999999999999999999999999999999753221   0000     0000    0            


Q ss_pred             ---hhhHhh---------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHH
Q 044538           80 ---LEDLLT---------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIV  135 (158)
Q Consensus        80 ---~~~~~~---------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~  135 (158)
                         ..+++.         ..+.+.++++.||+....+ .|+.+||-|||+||+||+..+.            ++|.+...
T Consensus        89 eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~d-lp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a  167 (209)
T COG4133          89 ELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA  167 (209)
T ss_pred             hhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccc-cchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHH
Confidence               001111         1255778999999988765 6899999999999999877654            69999999


Q ss_pred             HHHHHHhhc---CCeEEEEeecC
Q 044538          136 AVAVTLDEF---AGGVVLVSHDS  155 (158)
Q Consensus       136 ~l~~~l~~~---~~tvi~vtHd~  155 (158)
                      .+-..+...   ++-||++||+.
T Consensus       168 ~l~~l~~~H~~~GGiVllttHq~  190 (209)
T COG4133         168 LLTALMAAHAAQGGIVLLTTHQP  190 (209)
T ss_pred             HHHHHHHHHhcCCCEEEEecCCc
Confidence            888888664   35799999975

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.92  E-value=6.1e-25  Score=163.96  Aligned_cols=125  Identities=18%  Similarity=0.235  Sum_probs=85.9

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---cee--------eeccccc-----hhhHhh---------H
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR--------IGRHSRH-----LEDLLT---------M   86 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~--------~~~~~~~-----~~~~~~---------~   86 (158)
                      +|+|+||+|++|++++|+||||||||||+++|++....   .+.        ++.....     ..+.+.         .
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~   81 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG   81 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence            68999999999999999999999999999999975321   111        1110000     001110         0


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhh-c-CCeEEEEe
Q 044538           87 EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDE-F-AGGVVLVS  152 (158)
Q Consensus        87 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~-~-~~tvi~vt  152 (158)
                      .+....+.+.++++... ++++.+||+|||||++||++++.            ++|+.+...+.+.+.+ . ..++|++|
T Consensus        82 ~~~~~~~~~~~~l~~~~-~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vs  160 (213)
T PRK15177         82 DEFSHFCYQLTQLEQCY-TDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLT  160 (213)
T ss_pred             HHHHHHHHHHhChhHHh-hchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEE
Confidence            11122233456666543 35778999999999999988775            5789888888887643 2 35899999


Q ss_pred             ecCCC
Q 044538          153 HDSRL  157 (158)
Q Consensus       153 Hd~~~  157 (158)
                      ||+++
T Consensus       161 H~~~~  165 (213)
T PRK15177        161 HNPRL  165 (213)
T ss_pred             CCHHH
Confidence            99754

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=6.8e-25  Score=175.26  Aligned_cols=154  Identities=43%  Similarity=0.702  Sum_probs=124.5

Q ss_pred             CCCCCCCCCchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---------cceee
Q 044538            3 YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---------QKLRI   73 (158)
Q Consensus         3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---------~~~~~   73 (158)
                      .|++|+....|++-+-++ +|.|++. ++.+.+++|-|.--..++|+||||.|||||++++.+...         .++.+
T Consensus       575 ~FPep~~L~PPvLGlH~V-tFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~i  652 (807)
T KOG0066|consen  575 QFPEPTKLNPPVLGLHDV-TFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRI  652 (807)
T ss_pred             ecCCCCCCCCCeeecccc-cccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeee
Confidence            367777777778777776 9999875 468999999999999999999999999999999986432         24567


Q ss_pred             eccccchhhHhhH---------------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           74 GRHSRHLEDLLTM---------------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        74 ~~~~~~~~~~~~~---------------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      |.+.++..+.++.               .+.++..|..||+..+.+.-.+..|||||+-||++|-.++.           
T Consensus       653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPT  732 (807)
T KOG0066|consen  653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPT  732 (807)
T ss_pred             echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence            8776654333321               25677888999998877766778999999999999765553           


Q ss_pred             -CCCHHHHHHHHHHHhhcCCeEEEEeecCCCC
Q 044538          128 -HLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI  158 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~~  158 (158)
                       +||.+++..+-+.+.++.++|||||||.+++
T Consensus       733 NNLDIESIDALaEAIney~GgVi~VsHDeRLi  764 (807)
T KOG0066|consen  733 NNLDIESIDALAEAINEYNGGVIMVSHDERLI  764 (807)
T ss_pred             CCcchhhHHHHHHHHHhccCcEEEEeccccee
Confidence             6999999999999999999999999997753

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=8.8e-25  Score=165.11  Aligned_cols=127  Identities=24%  Similarity=0.299  Sum_probs=96.1

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ceee-eccccc-------------------hh-----
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLRI-GRHSRH-------------------LE-----   81 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~~-~~~~~~-------------------~~-----   81 (158)
                      ..+++|+||+|++|++++++|||||||||++++++|...+   .+++ |+.++.                   .+     
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~  116 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL  116 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence            3589999999999999999999999999999999975432   1111 111110                   00     


Q ss_pred             hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538           82 DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV  137 (158)
Q Consensus        82 ~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l  137 (158)
                      +.+            ...++...+.+.+++++... +|++.||-|||.|+.||++++.            +||...+..+
T Consensus       117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk-~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i  195 (325)
T COG4586         117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK-WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI  195 (325)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhh-hhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence            001            01256667778889987655 7899999999999999888775            6999999999


Q ss_pred             HHHHhhcC----CeEEEEeecCCC
Q 044538          138 AVTLDEFA----GGVVLVSHDSRL  157 (158)
Q Consensus       138 ~~~l~~~~----~tvi~vtHd~~~  157 (158)
                      .+.+++++    .||+++||+++-
T Consensus       196 r~Flke~n~~~~aTVllTTH~~~d  219 (325)
T COG4586         196 REFLKEYNEERQATVLLTTHIFDD  219 (325)
T ss_pred             HHHHHHHHHhhCceEEEEecchhh
Confidence            99987764    799999999863

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.92  E-value=1.6e-24  Score=196.52  Aligned_cols=141  Identities=21%  Similarity=0.244  Sum_probs=100.9

Q ss_pred             hhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------
Q 044538           15 LQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------   69 (158)
Q Consensus        15 l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------   69 (158)
                      +++.++ +|+|+.. ..++|+|+||+|++|+++||+||||||||||+++|.+....                        
T Consensus      1166 I~f~nV-sF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265       1166 IEIMDV-NFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred             EEEEEE-EEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence            556666 9999753 24689999999999999999999999999999999864332                        


Q ss_pred             ---------------------------------cee-----------------eeccccch-------hhHhh------H
Q 044538           70 ---------------------------------KLR-----------------IGRHSRHL-------EDLLT------M   86 (158)
Q Consensus        70 ---------------------------------~~~-----------------~~~~~~~~-------~~~~~------~   86 (158)
                                                       .+.                 +++++|..       .++..      .
T Consensus      1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at 1324 (1466)
T PTZ00265       1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDAT 1324 (1466)
T ss_pred             ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCC
Confidence                                             011                 22222221       01110      1


Q ss_pred             HHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc
Q 044538           87 EEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF  144 (158)
Q Consensus        87 ~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~  144 (158)
                      ++++.++++..++.+...      +    .....||||||||++||||++.            +||.++...+.+.|.+.
T Consensus      1325 ~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~ 1404 (1466)
T PTZ00265       1325 REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404 (1466)
T ss_pred             HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence            355666777666533111      1    1235799999999999999875            69999999999999875


Q ss_pred             ----CCeEEEEeecCC
Q 044538          145 ----AGGVVLVSHDSR  156 (158)
Q Consensus       145 ----~~tvi~vtHd~~  156 (158)
                          +.|+|+|||++.
T Consensus      1405 ~~~~~~TvIiIaHRls 1420 (1466)
T PTZ00265       1405 KDKADKTIITIAHRIA 1420 (1466)
T ss_pred             hccCCCEEEEEechHH
Confidence                479999999864

>PLN03211 ABC transporter G-25; Provisional

Probab=99.91  E-value=3e-24  Score=182.68  Aligned_cols=127  Identities=25%  Similarity=0.322  Sum_probs=95.1

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc------------------eeeeccccch--------hhH
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK------------------LRIGRHSRHL--------EDL   83 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~------------------~~~~~~~~~~--------~~~   83 (158)
                      +.+|+|+|+++++||+++|+||||||||||+++|++.....                  ..+++..|..        .+.
T Consensus        81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~  160 (659)
T PLN03211         81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET  160 (659)
T ss_pred             CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence            45899999999999999999999999999999999753210                  1134433321        011


Q ss_pred             h------------h---HHHHHHHHHHHcCCCCCCC----CCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538           84 L------------T---MEEAVHAKLRKFGLPGHNH----LTPIANLSGGQKVRVMFTLVSMY------------HLDTQ  132 (158)
Q Consensus        84 ~------------~---~~~~~~~~l~~~~l~~~~~----~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~  132 (158)
                      +            .   ..++++++++.+|+.+..+    ++.+..||||||||++||++++.            +||..
T Consensus       161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~  240 (659)
T PLN03211        161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT  240 (659)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence            0            0   1234667889999965432    23457899999999999988775            69999


Q ss_pred             HHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          133 SIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       133 ~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      +...+.+.++++   +.|||++||+++
T Consensus       241 ~~~~l~~~L~~l~~~g~TvI~~sH~~~  267 (659)
T PLN03211        241 AAYRLVLTLGSLAQKGKTIVTSMHQPS  267 (659)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence            999999888764   579999999975

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.91  E-value=1.5e-24  Score=162.86  Aligned_cols=119  Identities=24%  Similarity=0.351  Sum_probs=88.6

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------ceeeeccccch----------hhHh--------
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------KLRIGRHSRHL----------EDLL--------   84 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------~~~~~~~~~~~----------~~~~--------   84 (158)
                      |+|++|++++|+||||||||||+++|++....               ...+++.++..          .+.+        
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~   80 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI   80 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence            57899999999999999999999999964210               11234433321          0100        


Q ss_pred             --------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc
Q 044538           85 --------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF  144 (158)
Q Consensus        85 --------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~  144 (158)
                              ...+++.++++.+++....+ .++.+||||||||++||++++.            +||+.+...+.+.+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~  159 (223)
T TIGR03771        81 GWLRRPCVADFAAVRDALRRVGLTELAD-RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL  159 (223)
T ss_pred             ccccCCcHHHHHHHHHHHHHhCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                    01234677889999976544 5678999999999999988775            69999999999888764


Q ss_pred             ---CCeEEEEeecCCC
Q 044538          145 ---AGGVVLVSHDSRL  157 (158)
Q Consensus       145 ---~~tvi~vtHd~~~  157 (158)
                         +.|+|++|||+++
T Consensus       160 ~~~~~tvii~sH~~~~  175 (223)
T TIGR03771       160 AGAGTAILMTTHDLAQ  175 (223)
T ss_pred             HHcCCEEEEEeCCHHH
Confidence               4699999999763

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.91  E-value=1.5e-24  Score=197.65  Aligned_cols=143  Identities=14%  Similarity=0.116  Sum_probs=103.9

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+++.++ +++|+...+++|+|+||+|++||.+||+|+||||||||+++|.+....                    +..+
T Consensus      1234 ~I~f~nV-sf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232       1234 SIKFEDV-HLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred             cEEEEEE-EEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence            3666666 999965545689999999999999999999999999999999853210                    1123


Q ss_pred             eccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh----
Q 044538           74 GRHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      ++.+|+.       .+++.     .++++.++++..++.+...      +    .....||||||||++||||++.    
T Consensus      1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232       1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred             EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence            4444431       11111     1356677777766543211      1    1235899999999999999875    


Q ss_pred             --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                              ++|.++...+.+.+++.  ++|+|+|+|+++.
T Consensus      1393 LILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~t 1432 (1495)
T PLN03232       1393 LVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNT 1432 (1495)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence                    69999999999999875  4799999998753

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.91  E-value=2.7e-24  Score=180.53  Aligned_cols=139  Identities=28%  Similarity=0.406  Sum_probs=97.5

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~   74 (158)
                      +++.++ +|.|++. +++++|+||++++||.+||+|||||||||+++++.+....                    +..++
T Consensus       329 I~f~~v-sf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~  406 (567)
T COG1132         329 IEFENV-SFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG  406 (567)
T ss_pred             EEEEEE-EEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence            566666 9999853 3589999999999999999999999999999999853221                    11233


Q ss_pred             ccccch-------hhHhh------HHHHHHHHHHHcC-----------CCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           75 RHSRHL-------EDLLT------MEEAVHAKLRKFG-----------LPGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      +.+|+.       .++..      .++++.++++..+           ++.... .....||||||||++||||++.   
T Consensus       407 ~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~  485 (567)
T COG1132         407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPP  485 (567)
T ss_pred             EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceec-CCCccCCHHHHHHHHHHHHHhcCCC
Confidence            333321       11111      1245555555443           222222 2335899999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                               ++|+++...+.+.+.+.  +.|+|+|+|++.
T Consensus       486 ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRls  525 (567)
T COG1132         486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS  525 (567)
T ss_pred             EEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHh
Confidence                     69999999999988643  358999999874

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.91  E-value=3.3e-24  Score=161.35  Aligned_cols=129  Identities=25%  Similarity=0.278  Sum_probs=86.6

Q ss_pred             CCcceeeeeEEeeCCCEEEEECCCCCCcchHH-HHHHhhh---------------------hc--c---e--eeec----
Q 044538           29 QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLP-NLLAVRR---------------------RQ--K---L--RIGR----   75 (158)
Q Consensus        29 ~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl-~~i~~~~---------------------~~--~---~--~~~~----   75 (158)
                      ...+|+++||+|++||+++|+||||||||||+ ..+....                     ..  .   .  .+..    
T Consensus         7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (226)
T cd03270           7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT   86 (226)
T ss_pred             hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence            34689999999999999999999999999995 3332100                     00  0   0  0000    


Q ss_pred             ---ccc-ch---------hhHhhH---HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538           76 ---HSR-HL---------EDLLTM---EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------  127 (158)
Q Consensus        76 ---~~~-~~---------~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------  127 (158)
                         .+. ..         ...+..   .....+.++.+++.....++++.+|||||+||++||++++.            
T Consensus        87 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP  166 (226)
T cd03270          87 TSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP  166 (226)
T ss_pred             CCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence               000 00         000000   11224678889997532345679999999999999988753            


Q ss_pred             --CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 --HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                        +||+.....+.+.+++.   +.|+|+||||+++
T Consensus       167 t~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~  201 (226)
T cd03270         167 SIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT  201 (226)
T ss_pred             ccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH
Confidence              58899988888887653   5799999999753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.91  E-value=2.7e-24  Score=182.99  Aligned_cols=143  Identities=29%  Similarity=0.394  Sum_probs=106.5

Q ss_pred             hhhhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538           13 PMLQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------   69 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------   69 (158)
                      +|+.+.++ ++.|+..  ...+|+++||++++||+++|+||||||||||+++|++....                     
T Consensus         3 ~~l~~~nl-~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~   81 (648)
T PRK10535          3 ALLELKDI-RRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA   81 (648)
T ss_pred             cEEEEeeE-EEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence            46677676 9999642  23589999999999999999999999999999999964210                     


Q ss_pred             ---ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           70 ---KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        70 ---~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                         +..+++.++..        .+..            ...+++.++++.+++.+..+ +++.+||+||+||++||++++
T Consensus        82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~-~~~~~LS~Gq~qrv~LAraL~  160 (648)
T PRK10535         82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE-YQPSQLSGGQQQRVSIARALM  160 (648)
T ss_pred             HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhc-CCcccCCHHHHHHHHHHHHHh
Confidence               11233333221        1111            01235677889999986544 567899999999999999887


Q ss_pred             h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      .            +||+.++..+.+.++++   +.|+|++||+.++
T Consensus       161 ~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~  206 (648)
T PRK10535        161 NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV  206 (648)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence            5            69999999999888765   4799999999753

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.91  E-value=2.2e-24  Score=174.09  Aligned_cols=141  Identities=25%  Similarity=0.335  Sum_probs=97.7

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+.++++ .+.-++.++++++++||++.+||.++||||||||||||.|++.+.+.+                    -..+
T Consensus       334 ~L~Ve~l-~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi  412 (580)
T COG4618         334 ALSVERL-TAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI  412 (580)
T ss_pred             eeeEeee-eecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence            4666666 666677777899999999999999999999999999999999864321                    1236


Q ss_pred             eccccchh-------hHhh------HHHHHHHHHHHcC-----------CCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHLE-------DLLT------MEEAVHAKLRKFG-----------LPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~~-------~~~~------~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ||.+|+..       ++..      ..+.+-++.+.-|           .+...-. -...||||||||+++|||+..  
T Consensus       413 GYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P  491 (580)
T COG4618         413 GYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDP  491 (580)
T ss_pred             CcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCC
Confidence            77776531       1110      0122222222222           1111111 125899999999999998764  


Q ss_pred             ----------CCCHHHHHHHHHHHhh---cCCeEEEEeecCC
Q 044538          128 ----------HLDTQSIVAVAVTLDE---FAGGVVLVSHDSR  156 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~---~~~tvi~vtHd~~  156 (158)
                                +||.+....+.+.+.+   .++|+|+|||...
T Consensus       492 ~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs  533 (580)
T COG4618         492 FLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS  533 (580)
T ss_pred             cEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence                      7999999988887744   4689999999864

>PLN03130 ABC transporter C family member; Provisional

Probab=99.91  E-value=3.1e-24  Score=196.16  Aligned_cols=143  Identities=17%  Similarity=0.161  Sum_probs=103.7

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+++.++ +++|+...+++|+|+||+|++||.+||+|+||||||||+++|.+....                    +..+
T Consensus      1237 ~I~f~nV-sf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130       1237 SIKFEDV-VLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred             cEEEEEE-EEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence            4666666 999976545689999999999999999999999999999999853210                    1124


Q ss_pred             eccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh----
Q 044538           74 GRHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      ++.+|+.       .+++.     .++++.++++..++.+...      +    .....||||||||+|||||++.    
T Consensus      1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130       1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred             EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence            4444432       11111     1355667777665532111      1    1235899999999999999885    


Q ss_pred             --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                              ++|.++...+.+.+++.  ++|+|+|+|+++.
T Consensus      1396 LILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~t 1435 (1622)
T PLN03130       1396 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1435 (1622)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHH
Confidence                    69999999999999875  4799999998753

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.91  E-value=2.6e-24  Score=195.27  Aligned_cols=142  Identities=21%  Similarity=0.289  Sum_probs=100.3

Q ss_pred             hhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce------------------e
Q 044538           15 LQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL------------------R   72 (158)
Q Consensus        15 l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~------------------~   72 (158)
                      +++.++ +++|+... .++|+|+||+|++|++++|+||||||||||+++|++...+   .+                  .
T Consensus       383 I~~~nV-sf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~  461 (1466)
T PTZ00265        383 IQFKNV-RFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK  461 (1466)
T ss_pred             EEEEEE-EEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence            555565 99997542 3689999999999999999999999999999999864211   01                  1


Q ss_pred             eeccccch-------hhHhh------------------------------------------------------------
Q 044538           73 IGRHSRHL-------EDLLT------------------------------------------------------------   85 (158)
Q Consensus        73 ~~~~~~~~-------~~~~~------------------------------------------------------------   85 (158)
                      +++.+|..       .+.+.                                                            
T Consensus       462 Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  541 (1466)
T PTZ00265        462 IGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY  541 (1466)
T ss_pred             ccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence            33333221       00000                                                            


Q ss_pred             ---HHHHHHHHHHHcCCCCCC----------CCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHH
Q 044538           86 ---MEEAVHAKLRKFGLPGHN----------HLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVT  140 (158)
Q Consensus        86 ---~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~  140 (158)
                         .++++.++++.+++.+..          ......+||||||||++||||++.            +||+.+...+.+.
T Consensus       542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~  621 (1466)
T PTZ00265        542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT  621 (1466)
T ss_pred             ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence               013455566666654321          013457899999999999999875            6999999999999


Q ss_pred             Hhhc----CCeEEEEeecCCC
Q 044538          141 LDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       141 l~~~----~~tvi~vtHd~~~  157 (158)
                      +++.    +.|+|+|||+++.
T Consensus       622 L~~~~~~~g~TvIiIsHrls~  642 (1466)
T PTZ00265        622 INNLKGNENRITIIIAHRLST  642 (1466)
T ss_pred             HHHHhhcCCCEEEEEeCCHHH
Confidence            8776    4799999999753

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.1e-24  Score=158.64  Aligned_cols=141  Identities=23%  Similarity=0.330  Sum_probs=98.8

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---------------------ee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---------------------LR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---------------------~~   72 (158)
                      |+++.++ ++...+. +.+|+++||+|++||+.+|+||||||||||..+|+|.....                     .+
T Consensus         3 ~L~I~dL-hv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr   80 (251)
T COG0396           3 MLEIKDL-HVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR   80 (251)
T ss_pred             eeEEeee-EEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence            4555554 6666553 36899999999999999999999999999999999643211                     11


Q ss_pred             --eeccccch--------hhH---------------hhHHHHHHHHHHHcCCCCCCCCCCCC-CCChHHHHHHHHHHHHh
Q 044538           73 --IGRHSRHL--------EDL---------------LTMEEAVHAKLRKFGLPGHNHLTPIA-NLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        73 --~~~~~~~~--------~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~ia~~~l  126 (158)
                        +...+|++        .+.               ....+++++.++.+++++....|.+. -+|||||+|..|+.+++
T Consensus        81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~  160 (251)
T COG0396          81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL  160 (251)
T ss_pred             cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence              11112211        011               11235677889999998744445553 59999999999987665


Q ss_pred             h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      .            +||..+...+.+.+.++   +.++++|||..+
T Consensus       161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r  205 (251)
T COG0396         161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR  205 (251)
T ss_pred             cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence            4            68988887776666554   579999999754

>PTZ00243 ABC transporter; Provisional

Probab=99.91  E-value=4.4e-24  Score=194.81  Aligned_cols=142  Identities=20%  Similarity=0.153  Sum_probs=105.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+.+.++ +++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.+....                    +..+
T Consensus      1308 ~I~f~nV-sf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243       1308 SLVFEGV-QMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred             eEEEEEE-EEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence            3666666 999976555689999999999999999999999999999999853210                    1124


Q ss_pred             eccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC------CC----CCCCCChHHHHHHHHHHHHhh----
Q 044538           74 GRHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH------LT----PIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~------~~----~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      ++.+|..       .+++.     .++++.++++..++.+...      +.    ...+||||||||+|||||++.    
T Consensus      1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243       1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred             eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence            4444431       11111     1466788888887754211      11    235799999999999999885    


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                               ++|.++...+.+.+++.  +.|+|+|+|+++
T Consensus      1467 ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ 1506 (1560)
T PTZ00243       1467 FILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLH 1506 (1560)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHH
Confidence                     48999999999999775  479999999875

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.91  E-value=9.1e-24  Score=147.61  Aligned_cols=139  Identities=31%  Similarity=0.331  Sum_probs=97.8

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRI   73 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~   73 (158)
                      +.+.|+ +...++.  ..|-++||+|.+||++.|+||||||||||+..+.+....                     ...+
T Consensus         3 l~l~nv-sl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~   79 (213)
T COG4136           3 LCLKNV-SLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI   79 (213)
T ss_pred             eeeeee-eecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence            344455 6666554  468899999999999999999999999999988753211                     1123


Q ss_pred             eccccc--hhhHh-----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538           74 GRHSRH--LEDLL-----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        74 ~~~~~~--~~~~~-----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                      |..+|+  +++.+                 .....+..++++.|++...+. -+.+||||||-||++-|+++.       
T Consensus        80 GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~-dP~tlSGGQrARvaL~R~Lla~Pk~lLL  158 (213)
T COG4136          80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ-DPATLSGGQRARVALLRALLAQPKALLL  158 (213)
T ss_pred             eeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhc-ChhhcCcchHHHHHHHHHHHhCcceeee
Confidence            332222  11111                 123456788999999987774 458999999999999877765       


Q ss_pred             -----CCCHH----HHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          128 -----HLDTQ----SIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----~lD~~----~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                           +||..    .++++...++..+..+|+||||...
T Consensus       159 DEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D  197 (213)
T COG4136         159 DEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD  197 (213)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence                 35543    3455666667777889999999864

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.91  E-value=3.4e-24  Score=172.53  Aligned_cols=140  Identities=21%  Similarity=0.344  Sum_probs=106.6

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------cee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~   72 (158)
                      .+.+.++ ++.|++  ..+.++|||+|++||+.||+|+||||||||+++|.|...+                     +..
T Consensus         4 ~l~~~~i-tK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G   80 (501)
T COG3845           4 ALEMRGI-TKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG   80 (501)
T ss_pred             eEEEecc-EEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence            4556666 999984  3589999999999999999999999999999999864321                     123


Q ss_pred             eeccccchh--hHh---------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhhC-
Q 044538           73 IGRHSRHLE--DLL---------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYH-  128 (158)
Q Consensus        73 ~~~~~~~~~--~~~---------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~~-  128 (158)
                      +|...|++.  +.+                     ...+++.++.+++|++-..+ .++.+||-||||||.|-+++..+ 
T Consensus        81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-~~V~dLsVG~qQRVEIlKaLyr~a  159 (501)
T COG3845          81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-AKVADLSVGEQQRVEILKALYRGA  159 (501)
T ss_pred             CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-ceeecCCcchhHHHHHHHHHhcCC
Confidence            444444431  111                     22467788899999976544 67899999999999998887764 


Q ss_pred             -----------CCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          129 -----------LDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       129 -----------lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                                 |-|...+++++.++++   +.|||+|||-+++
T Consensus       160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E  202 (501)
T COG3845         160 RLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE  202 (501)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence                       5588888888877655   5899999998754

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=4.7e-24  Score=186.46  Aligned_cols=142  Identities=28%  Similarity=0.337  Sum_probs=98.5

Q ss_pred             hhhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538           14 MLQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~   72 (158)
                      .+++.++ .|+|+..+ ..+|+++||.|++|+.++|+|||||||||++.+|.....+                    +-.
T Consensus       350 ~ief~nV-~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~  428 (1228)
T KOG0055|consen  350 EIEFRNV-CFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ  428 (1228)
T ss_pred             ceEEEEE-EecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence            3566666 99998764 4789999999999999999999999999999999843211                    112


Q ss_pred             eeccccchh-------hHhh------HHHHHHHHHHHcC-----------CCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           73 IGRHSRHLE-------DLLT------MEEAVHAKLRKFG-----------LPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        73 ~~~~~~~~~-------~~~~------~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                      +|.+.|.+.       ++..      ..+++.++.+..+           ++..... +..+||||||||+|||||++. 
T Consensus       429 iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge-~g~qLSGGQKQRIAIARalv~~  507 (1228)
T KOG0055|consen  429 IGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGE-RGVQLSGGQKQRIAIARALVRN  507 (1228)
T ss_pred             cCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccC-CCCCCChHHHHHHHHHHHHHhC
Confidence            333333210       1100      0123333333222           2222222 235799999999999999875 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                                 .||+++...+.+.|++.  +.|.|+|+|++..
T Consensus       508 P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLSt  550 (1228)
T KOG0055|consen  508 PKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLST  550 (1228)
T ss_pred             CCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhh
Confidence                       69999999999999876  4699999999754

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.90  E-value=6.9e-24  Score=193.51  Aligned_cols=143  Identities=21%  Similarity=0.179  Sum_probs=104.3

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      -+++.++ +++|+....++|+|+||+|++||.+||+|++|||||||+++|.+....                    +..+
T Consensus      1284 ~I~f~nV-sf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957      1284 RVEFRNY-CLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred             cEEEEEE-EEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence            3666666 999976545689999999999999999999999999999999853210                    1123


Q ss_pred             eccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC------CC----CCCCCChHHHHHHHHHHHHhh----
Q 044538           74 GRHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH------LT----PIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~------~~----~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      ++.+|+.       .+++.     .++++.++++..++.+...      +.    ....||||||||+|||||++.    
T Consensus      1363 ~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957      1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred             eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence            4444431       11111     1356677777776543111      11    235799999999999999875    


Q ss_pred             --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                              ++|.++...+.+.+++.  ++|+|+|+|+++.
T Consensus      1443 LiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957      1443 LVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1482 (1522)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence                    69999999999999775  4799999998753

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.90  E-value=2.3e-23  Score=189.74  Aligned_cols=142  Identities=19%  Similarity=0.238  Sum_probs=105.0

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIG   74 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~   74 (158)
                      .+.+.++ +++|+...+++|+|+||+|++||.+||+|+||||||||+++|.+....                   +..++
T Consensus      1217 ~I~f~nV-s~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271      1217 QMDVQGL-TAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred             eEEEEEE-EEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceE
Confidence            3666666 999986556799999999999999999999999999999999854321                   11234


Q ss_pred             ccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC------CCC----CCCCChHHHHHHHHHHHHhh-----
Q 044538           75 RHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH------LTP----IANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        75 ~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~------~~~----~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      +.+|..       .+++.     .++++.++++.+++.+...      +..    ...||||||||+|||||++.     
T Consensus      1296 ~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271      1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred             EEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence            444431       11111     2466778888887643211      111    24799999999999999875     


Q ss_pred             -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                             ++|..+...+.+.|++.  ++|||+|||+++
T Consensus      1376 lLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ 1413 (1490)
T TIGR01271      1376 LLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE 1413 (1490)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence                   69999999999999875  479999999865

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.90  E-value=9e-24  Score=150.45  Aligned_cols=122  Identities=32%  Similarity=0.477  Sum_probs=85.4

Q ss_pred             eeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHHHcCC
Q 044538           21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLRKFGL   99 (158)
Q Consensus        21 ~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l   99 (158)
                      +++.|++.  .+++++||++++|++++|+||||||||||+++|++..... ..+-+....... ..    ..+....+++
T Consensus         5 ~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~-~~----~~~~~~~i~~   77 (157)
T cd00267           5 LSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK-LP----LEELRRRIGY   77 (157)
T ss_pred             EEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEccc-CC----HHHHHhceEE
Confidence            37777653  5899999999999999999999999999999999865322 111111111100 00    0011111111


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          100 PGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       100 ~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                              +.+||+||+||++||++++.            +||..+...+.+.+.++   +.|+|++||++++
T Consensus        78 --------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~  142 (157)
T cd00267          78 --------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL  142 (157)
T ss_pred             --------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence                    12399999999999988764            69999999999888764   3599999999754

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.89  E-value=2.9e-23  Score=189.20  Aligned_cols=143  Identities=22%  Similarity=0.257  Sum_probs=100.1

Q ss_pred             hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ceeeeccccch----
Q 044538           14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KLRIGRHSRHL----   80 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~~~~~~~~~~----   80 (158)
                      .+.+.++ +|.|+.. ..++|+|+||++++|+.++|+||+|||||||+++|.+....        +..+++.+|..    
T Consensus       614 ~I~~~~v-sF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~  692 (1495)
T PLN03232        614 AISIKNG-YFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN  692 (1495)
T ss_pred             cEEEEee-EEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence            3556665 9999753 34689999999999999999999999999999999975432        12355555542    


Q ss_pred             ---hhHhh-----HHHHHHHHHHHcCCCCCC------CCC----CCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538           81 ---EDLLT-----MEEAVHAKLRKFGLPGHN------HLT----PIANLSGGQKVRVMFTLVSMY------------HLD  130 (158)
Q Consensus        81 ---~~~~~-----~~~~~~~~l~~~~l~~~~------~~~----~~~~LSgGqkqrv~ia~~~l~------------~lD  130 (158)
                         .++..     .+++..++++..++.+..      .+.    ....||||||||++||||+..            +||
T Consensus       693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD  772 (1495)
T PLN03232        693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD  772 (1495)
T ss_pred             ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence               11111     134566666665553211      111    235799999999999999775            699


Q ss_pred             HHHHHHHHHH-Hhh--cCCeEEEEeecCCC
Q 044538          131 TQSIVAVAVT-LDE--FAGGVVLVSHDSRL  157 (158)
Q Consensus       131 ~~~~~~l~~~-l~~--~~~tvi~vtHd~~~  157 (158)
                      .+....+++. +..  .+.|+|+|||+++.
T Consensus       773 ~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~  802 (1495)
T PLN03232        773 AHVAHQVFDSCMKDELKGKTRVLVTNQLHF  802 (1495)
T ss_pred             HHHHHHHHHHHhhhhhcCCEEEEEECChhh
Confidence            9988877654 443  24799999999753

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.89  E-value=4e-23  Score=188.58  Aligned_cols=143  Identities=20%  Similarity=0.182  Sum_probs=98.9

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----eeeeccccchh-----
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K----LRIGRHSRHLE-----   81 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~----~~~~~~~~~~~-----   81 (158)
                      .+.+.++ ++.|+....++|+|+||++++|++++|+||||||||||+++|++....   .    ..+++.+|...     
T Consensus       636 ~i~~~~~-~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~T  714 (1522)
T TIGR00957       636 SITVHNA-TFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDS  714 (1522)
T ss_pred             cEEEEEe-EEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCc
Confidence            4566666 899975445689999999999999999999999999999999975422   1    13455554321     


Q ss_pred             --hHhh-----HHHHHHHHHHHcC------CCCCC----CCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538           82 --DLLT-----MEEAVHAKLRKFG------LPGHN----HLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ  132 (158)
Q Consensus        82 --~~~~-----~~~~~~~~l~~~~------l~~~~----~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~  132 (158)
                        ++..     ..++.+++++..+      ..+..    ...+..+||||||||++||||+..            +||+.
T Consensus       715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~  794 (1522)
T TIGR00957       715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH  794 (1522)
T ss_pred             HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence              1110     0122233333222      21111    113457899999999999999775            69999


Q ss_pred             HHHHHHHHHhh-----cCCeEEEEeecCCC
Q 044538          133 SIVAVAVTLDE-----FAGGVVLVSHDSRL  157 (158)
Q Consensus       133 ~~~~l~~~l~~-----~~~tvi~vtHd~~~  157 (158)
                      ....+.+.+.+     .+.|+|+||||+++
T Consensus       795 ~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~  824 (1522)
T TIGR00957       795 VGKHIFEHVIGPEGVLKNKTRILVTHGISY  824 (1522)
T ss_pred             HHHHHHHHHhhhhhhhcCCEEEEEeCChhh
Confidence            99999988753     24799999999864

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=4.5e-23  Score=180.38  Aligned_cols=140  Identities=27%  Similarity=0.365  Sum_probs=97.4

Q ss_pred             hhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---c-----------------ceee
Q 044538           15 LQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---Q-----------------KLRI   73 (158)
Q Consensus        15 l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---~-----------------~~~~   73 (158)
                      +++.++ +|.||..+ .++|+|+||++++|+.+||+|||||||||.+.+|-....   .                 +..+
T Consensus       988 I~~~~V-~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen  988 IEFRNV-SFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred             EEEeee-EeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence            566666 99998654 368999999999999999999999999999988852110   0                 0112


Q ss_pred             eccccch-------hhHh------hHHHHHHHHHHHcCC-----------CCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHL-------EDLL------TMEEAVHAKLRKFGL-----------PGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~------~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      +.+.|.+       .++.      -..+++.++++..+.           +.... .+..+||||||||+|||||++.  
T Consensus      1067 ~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG-erG~QLSGGQKQRIAIARAilRnP 1145 (1228)
T KOG0055|consen 1067 GLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVG-ERGVQLSGGQKQRIAIARAILRNP 1145 (1228)
T ss_pred             ceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccC-cccCcCCchHHHHHHHHHHHHcCC
Confidence            2222211       0000      012344455544332           22222 1346999999999999999876  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                                .||.++.+.+.+.|++.  +.|+|+|.|.+.
T Consensus      1146 kILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLS 1186 (1228)
T KOG0055|consen 1146 KILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLS 1186 (1228)
T ss_pred             CeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchh
Confidence                      59999999999999876  469999999875

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=9.7e-24  Score=160.05  Aligned_cols=122  Identities=25%  Similarity=0.287  Sum_probs=94.6

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------------------------cceeeeccccc--hhhHhh---
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------------------------QKLRIGRHSRH--LEDLLT---   85 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------------------------~~~~~~~~~~~--~~~~~~---   85 (158)
                      +++|+.+...++||.|+||||||||+|+|+|..+                        .+.++||++|+  +++.++   
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg   95 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG   95 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence            7999999989999999999999999999996432                        12346776664  122221   


Q ss_pred             ---------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc
Q 044538           86 ---------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF  144 (158)
Q Consensus        86 ---------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~  144 (158)
                               ......++.+.+|+.+...+ ++.+|||||||||+|+||++.            .||.....+++-.++++
T Consensus        96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R-~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL  174 (352)
T COG4148          96 NLRYGMWKSMRAQFDQLVALLGIEHLLDR-YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERL  174 (352)
T ss_pred             chhhhhcccchHhHHHHHHHhCcHHHHhh-CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHH
Confidence                     23567788999999987764 558999999999999999876            58888888887666554


Q ss_pred             ----CCeEEEEeecCCC
Q 044538          145 ----AGGVVLVSHDSRL  157 (158)
Q Consensus       145 ----~~tvi~vtHd~~~  157 (158)
                          +..|++|||.+++
T Consensus       175 ~~e~~IPIlYVSHS~~E  191 (352)
T COG4148         175 RDEINIPILYVSHSLDE  191 (352)
T ss_pred             HHhcCCCEEEEecCHHH
Confidence                4689999998764

>PLN03130 ABC transporter C family member; Provisional

Probab=99.89  E-value=4.6e-23  Score=188.61  Aligned_cols=143  Identities=22%  Similarity=0.245  Sum_probs=100.2

Q ss_pred             hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------eeeeccccch----
Q 044538           14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------LRIGRHSRHL----   80 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------~~~~~~~~~~----   80 (158)
                      .+.+.++ +|.|+.. ..++|+|+||+|++|+.++|+||+|||||||+++|.+.....        ..+++.+|..    
T Consensus       614 ~I~~~nv-sf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfn  692 (1622)
T PLN03130        614 AISIKNG-YFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFN  692 (1622)
T ss_pred             ceEEEee-EEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCC
Confidence            3566666 9999753 246899999999999999999999999999999999754321        2355655542    


Q ss_pred             ---hhHhh-----HHHHHHHHHHHcCCCCCC------CC----CCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538           81 ---EDLLT-----MEEAVHAKLRKFGLPGHN------HL----TPIANLSGGQKVRVMFTLVSMY------------HLD  130 (158)
Q Consensus        81 ---~~~~~-----~~~~~~~~l~~~~l~~~~------~~----~~~~~LSgGqkqrv~ia~~~l~------------~lD  130 (158)
                         .++..     .+++..++++..++.+..      .+    .....||||||||++||||+..            +||
T Consensus       693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD  772 (1622)
T PLN03130        693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD  772 (1622)
T ss_pred             CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence               11111     135566666666553211      11    1235799999999999999775            699


Q ss_pred             HHHHHHHHH-HHhhc--CCeEEEEeecCCC
Q 044538          131 TQSIVAVAV-TLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       131 ~~~~~~l~~-~l~~~--~~tvi~vtHd~~~  157 (158)
                      ++....+++ .+...  +.|+|+|||++..
T Consensus       773 ~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~  802 (1622)
T PLN03130        773 AHVGRQVFDKCIKDELRGKTRVLVTNQLHF  802 (1622)
T ss_pred             HHHHHHHHHHHhhHHhcCCEEEEEECCHhH
Confidence            988877764 44432  4799999999753

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.89  E-value=1.6e-22  Score=183.26  Aligned_cols=140  Identities=19%  Similarity=0.269  Sum_probs=102.3

Q ss_pred             hhhheeeeEEcCC--CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------cce-------------ee
Q 044538           15 LQLIEVISFSYPN--LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------QKL-------------RI   73 (158)
Q Consensus        15 l~~~~~~~~~~~~--~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------~~~-------------~~   73 (158)
                      +...++ ++.|+.  +.+.+|+|+|+++++|++++|+||||||||||+++|++...      +.+             .+
T Consensus       760 l~~~nl-~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i  838 (1394)
T TIGR00956       760 FHWRNL-TYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI  838 (1394)
T ss_pred             EEEEee-EEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence            344444 777742  23468999999999999999999999999999999997542      111             13


Q ss_pred             eccccch--------hhHh---------------hHHHHHHHHHHHcCCCCCCCCCCCC----CCChHHHHHHHHHHHHh
Q 044538           74 GRHSRHL--------EDLL---------------TMEEAVHAKLRKFGLPGHNHLTPIA----NLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        74 ~~~~~~~--------~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqkqrv~ia~~~l  126 (158)
                      ++.+|..        .+.+               ...++++++++.+++.+..+ +.++    .||||||||++||++++
T Consensus       839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d-~~v~~~~~~LSgGqrqRl~Ia~aL~  917 (1394)
T TIGR00956       839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYAD-AVVGVPGEGLNVEQRKRLTIGVELV  917 (1394)
T ss_pred             eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCC-CeeCCCCCCCCHHHhhHHHHHHHHH
Confidence            3433321        0111               01245678899999976544 4444    79999999999998876


Q ss_pred             h-------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          127 Y-------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       127 ~-------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      .             +||..+...+++.|++.   +.|||+++||++
T Consensus       918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~  963 (1394)
T TIGR00956       918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPS  963 (1394)
T ss_pred             cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence            4             68999999999888765   479999999975

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.89  E-value=5.2e-23  Score=151.87  Aligned_cols=119  Identities=22%  Similarity=0.321  Sum_probs=85.9

Q ss_pred             eeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------------ceeeeccccchhhHh--h
Q 044538           34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------------KLRIGRHSRHLEDLL--T   85 (158)
Q Consensus        34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------------~~~~~~~~~~~~~~~--~   85 (158)
                      +++++++.+| +++|+||||||||||++++++....                          ...+++.+|.....+  .
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~   92 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII   92 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence            5789999999 9999999999999999999753210                          112334333322111  1


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh----h------------CCCHHHHHHHHHHHhhc--CCe
Q 044538           86 MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM----Y------------HLDTQSIVAVAVTLDEF--AGG  147 (158)
Q Consensus        86 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l----~------------~lD~~~~~~l~~~l~~~--~~t  147 (158)
                      ..+++.++++.   .+.. ++++.+||||||||++||++++    .            +||+.....+.+.+++.  +.+
T Consensus        93 ~~~~~~~~l~~---~~~~-~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~t  168 (197)
T cd03278          93 SQGDVSEIIEA---PGKK-VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQ  168 (197)
T ss_pred             ehhhHHHHHhC---CCcc-ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCE
Confidence            13456666666   3333 3567899999999999998764    1            59999999999988876  368


Q ss_pred             EEEEeecCCC
Q 044538          148 VVLVSHDSRL  157 (158)
Q Consensus       148 vi~vtHd~~~  157 (158)
                      ||++|||+++
T Consensus       169 iIiitH~~~~  178 (197)
T cd03278         169 FIVITHRKGT  178 (197)
T ss_pred             EEEEECCHHH
Confidence            9999999753

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.89  E-value=9e-23  Score=172.86  Aligned_cols=127  Identities=25%  Similarity=0.322  Sum_probs=95.5

Q ss_pred             CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc------e--------------eeeccccch--------
Q 044538           29 QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK------L--------------RIGRHSRHL--------   80 (158)
Q Consensus        29 ~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~------~--------------~~~~~~~~~--------   80 (158)
                      .+++|+|+|+++++||+++|+||||||||||+++|++.....      +              .+++.+|..        
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV  116 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV  116 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence            456899999999999999999999999999999999754221      1              123333321        


Q ss_pred             hhHh---------------hHHHHHHHHHHHcCCCCCCCCCCCC------CCChHHHHHHHHHHHHhh------------
Q 044538           81 EDLL---------------TMEEAVHAKLRKFGLPGHNHLTPIA------NLSGGQKVRVMFTLVSMY------------  127 (158)
Q Consensus        81 ~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGqkqrv~ia~~~l~------------  127 (158)
                      .+.+               ...+++.++++.+|+.+..+ .+++      .||||||||++||++++.            
T Consensus       117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts  195 (617)
T TIGR00955       117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS  195 (617)
T ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCc-CccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence            0111               01235778899999976544 4444      599999999999998775            


Q ss_pred             CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          128 HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       128 ~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      +||..+...+++.+++.   +.|+|+++|++.
T Consensus       196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~  227 (617)
T TIGR00955       196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS  227 (617)
T ss_pred             chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            69999999999888765   479999999974

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.89  E-value=4.6e-23  Score=153.79  Aligned_cols=128  Identities=24%  Similarity=0.282  Sum_probs=88.0

Q ss_pred             CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcce---------------eeeccccch-hh----------
Q 044538           29 QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKL---------------RIGRHSRHL-ED----------   82 (158)
Q Consensus        29 ~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~---------------~~~~~~~~~-~~----------   82 (158)
                      ...+|+||||++++||.+||+|+||||||||+++|++...+..               ..|+.++.. .+          
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G  118 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG  118 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence            4578999999999999999999999999999999997543211               112221110 00          


Q ss_pred             --HhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhhC------------CCHHHHHHHHHHHhhc---C
Q 044538           83 --LLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYH------------LDTQSIVAVAVTLDEF---A  145 (158)
Q Consensus        83 --~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~~------------lD~~~~~~l~~~l~~~---~  145 (158)
                        ....++.+++..+.-.|.+..+ .|+.++|-||+-|+++|.+...+            -|+.=.+.-.+.+.++   +
T Consensus       119 ~~~~ei~~~~~eIieFaELG~fi~-~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~  197 (249)
T COG1134         119 LTRKEIDEKVDEIIEFAELGDFID-QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN  197 (249)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhh-CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcC
Confidence              0112355666666667766654 79999999999999998776554            3444444444444333   4


Q ss_pred             CeEEEEeecCCC
Q 044538          146 GGVVLVSHDSRL  157 (158)
Q Consensus       146 ~tvi~vtHd~~~  157 (158)
                      .|+|+||||++.
T Consensus       198 ~tiv~VSHd~~~  209 (249)
T COG1134         198 KTIVLVSHDLGA  209 (249)
T ss_pred             CEEEEEECCHHH
Confidence            799999999864

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=2.1e-23  Score=148.44  Aligned_cols=127  Identities=27%  Similarity=0.351  Sum_probs=96.7

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh----------------------------cceeeeccccchh
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR----------------------------QKLRIGRHSRHLE   81 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~----------------------------~~~~~~~~~~~~~   81 (158)
                      .++++++||+++.|||+++-||||+|||||++++.+...                            .+..+||..|.+.
T Consensus        24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR  103 (235)
T COG4778          24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR  103 (235)
T ss_pred             eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence            478999999999999999999999999999999974211                            1122455443321


Q ss_pred             -------------hH-------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CC
Q 044538           82 -------------DL-------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HL  129 (158)
Q Consensus        82 -------------~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~l  129 (158)
                                   +.       -....++..++.++++++....-++.++||||||||.|||.++.            .|
T Consensus       104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL  183 (235)
T COG4778         104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL  183 (235)
T ss_pred             hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence                         00       01235677899999998866666779999999999999988764            58


Q ss_pred             CHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          130 DTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       130 D~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      |..++..+++++++.   +.++|=|=||.+
T Consensus       184 Da~Nr~vVveli~e~Ka~GaAlvGIFHDee  213 (235)
T COG4778         184 DATNRAVVVELIREAKARGAALVGIFHDEE  213 (235)
T ss_pred             cccchHHHHHHHHHHHhcCceEEEeeccHH
Confidence            999999999988664   467888889853

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=5.7e-23  Score=150.80  Aligned_cols=126  Identities=24%  Similarity=0.366  Sum_probs=88.2

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce-----------------eeeccccchh----hHhh
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL-----------------RIGRHSRHLE----DLLT   85 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~-----------------~~~~~~~~~~----~~~~   85 (158)
                      +++|+++|++|++|+++.|+|.||||||||+++++|....   .+                 .+++++|++.    +.++
T Consensus        19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT   98 (263)
T COG1101          19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT   98 (263)
T ss_pred             HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence            4689999999999999999999999999999999964221   11                 1122223211    1111


Q ss_pred             H------------------------HHHHHHHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538           86 M------------------------EEAVHAKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------  127 (158)
Q Consensus        86 ~------------------------~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------  127 (158)
                      .                        .+..++.++.+  |+++... .++.-|||||||-+++++|.+.            
T Consensus        99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~-~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA  177 (263)
T COG1101          99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLS-DRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA  177 (263)
T ss_pred             HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhc-ChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence            1                        12233444444  4455444 4778999999999999887664            


Q ss_pred             CCCHHHHHHHHH----HHhhcCCeEEEEeecCC
Q 044538          128 HLDTQSIVAVAV----TLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       128 ~lD~~~~~~l~~----~l~~~~~tvi~vtHd~~  156 (158)
                      +|||.....+++    ++.+.+.|.+||||+++
T Consensus       178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~  210 (263)
T COG1101         178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME  210 (263)
T ss_pred             cCCcchHHHHHHHHHHHHHhcCCceEEEeccHH
Confidence            699988877775    45566789999999985

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=3.8e-23  Score=167.05  Aligned_cols=135  Identities=26%  Similarity=0.387  Sum_probs=102.2

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc------eeeeccc--cc-------hhhHh--
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK------LRIGRHS--RH-------LEDLL--   84 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~------~~~~~~~--~~-------~~~~~--   84 (158)
                      ++.|++.  .+|++-++++..|..|||+|+||+|||||+|+|+...-..      .+-.+..  +.       ..+.+  
T Consensus        87 dLa~G~k--~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~  164 (582)
T KOG0062|consen   87 DLAYGGK--ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAE  164 (582)
T ss_pred             eeeecch--hhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHh
Confidence            7777754  5799999999999999999999999999999998521110      0000000  00       00000  


Q ss_pred             --------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc
Q 044538           85 --------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF  144 (158)
Q Consensus        85 --------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~  144 (158)
                              +..+....+|..+|+.+....+|..+||||-|-|+++|||++.            +||..+..++.+.|..+
T Consensus       165 e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~  244 (582)
T KOG0062|consen  165 EKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW  244 (582)
T ss_pred             hhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC
Confidence                    1122233378899998877778999999999999999999875            68999999999999999


Q ss_pred             CCeEEEEeecCCCC
Q 044538          145 AGGVVLVSHDSRLI  158 (158)
Q Consensus       145 ~~tvi~vtHd~~~~  158 (158)
                      +.|+|+||||..|+
T Consensus       245 ~~T~liVSHDr~FL  258 (582)
T KOG0062|consen  245 KITSLIVSHDRNFL  258 (582)
T ss_pred             CceEEEEeccHHHH
Confidence            99999999998763

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.88  E-value=3.1e-22  Score=161.63  Aligned_cols=141  Identities=26%  Similarity=0.360  Sum_probs=96.5

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh--------------------hcceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR--------------------RQKLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~--------------------~~~~~~   73 (158)
                      .+++.|+ +|.|..+. ++|+||||++.+|+.+||+||||+||||++|++...-                    .-+..+
T Consensus       537 ~i~fsnv-tF~Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I  614 (790)
T KOG0056|consen  537 KIEFSNV-TFAYDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI  614 (790)
T ss_pred             eEEEEEe-EEecCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence            3567777 99998764 6899999999999999999999999999999986210                    011234


Q ss_pred             eccccch---hhHh----------hHHHHHHHHHHHc-------CCCCCCCC---CCCCCCChHHHHHHHHHHHHhh---
Q 044538           74 GRHSRHL---EDLL----------TMEEAVHAKLRKF-------GLPGHNHL---TPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        74 ~~~~~~~---~~~~----------~~~~~~~~~l~~~-------~l~~~~~~---~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      |.++|+.   .+..          ...+++.++.+..       ++++.-..   .+.-.|||||||||+|||+++.   
T Consensus       615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~  694 (790)
T KOG0056|consen  615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS  694 (790)
T ss_pred             CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence            5444431   0000          0123333333332       33321110   1224799999999999998764   


Q ss_pred             ---------CCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSR  156 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~  156 (158)
                               .||..+.+.+...+.+..  .|-|+|.|.+.
T Consensus       695 iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLS  734 (790)
T KOG0056|consen  695 IILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLS  734 (790)
T ss_pred             EEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeeh
Confidence                     589999999999998874  58889999875

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.88  E-value=2.4e-22  Score=144.70  Aligned_cols=142  Identities=21%  Similarity=0.219  Sum_probs=98.8

Q ss_pred             hhhhheeeeEEcCC-------CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e------------
Q 044538           14 MLQLIEVISFSYPN-------LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L------------   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~-------~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~------------   71 (158)
                      .+++.++ +++|.+       ....+++.|||++.+|+.++++|.||||||||.++++|...+.   +            
T Consensus         4 LLeV~nL-sKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy   82 (267)
T COG4167           4 LLEVRNL-SKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY   82 (267)
T ss_pred             hhhhhhh-hhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence            4455554 655532       1235789999999999999999999999999999998632210   0            


Q ss_pred             -----eeeccccch----hhH----------------h---hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHH
Q 044538           72 -----RIGRHSRHL----EDL----------------L---TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTL  123 (158)
Q Consensus        72 -----~~~~~~~~~----~~~----------------~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~  123 (158)
                           .+...+|+.    .+.                +   ...+++.+.++.+|+-+.....++..||-|||||||+||
T Consensus        83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR  162 (267)
T COG4167          83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR  162 (267)
T ss_pred             HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence                 011111111    000                0   113567788999999765555677999999999999999


Q ss_pred             HHhh------------CCCHHHHHHHHHHHh----hcCCeEEEEeecCC
Q 044538          124 VSMY------------HLDTQSIVAVAVTLD----EFAGGVVLVSHDSR  156 (158)
Q Consensus       124 ~~l~------------~lD~~~~~~l~~~l~----~~~~tvi~vtHd~~  156 (158)
                      |++.            +||...+.++.+++-    +.+.+-|+|+.++.
T Consensus       163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG  211 (267)
T COG4167         163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG  211 (267)
T ss_pred             HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh
Confidence            8764            689888887777653    44678888888764

>PLN03140 ABC transporter G family member; Provisional

Probab=99.88  E-value=3.5e-22  Score=181.15  Aligned_cols=126  Identities=21%  Similarity=0.205  Sum_probs=94.7

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----c--------------eeeeccccch--------hh
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----K--------------LRIGRHSRHL--------ED   82 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----~--------------~~~~~~~~~~--------~~   82 (158)
                      ..+|+|+|+++++|++++|+||||||||||+++|++....     .              ..+++..|..        .+
T Consensus       893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E  972 (1470)
T PLN03140        893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRE  972 (1470)
T ss_pred             ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHH
Confidence            3689999999999999999999999999999999975321     0              1133433321        01


Q ss_pred             Hh------------h---HHHHHHHHHHHcCCCCCCCCCCC-----CCCChHHHHHHHHHHHHhh------------CCC
Q 044538           83 LL------------T---MEEAVHAKLRKFGLPGHNHLTPI-----ANLSGGQKVRVMFTLVSMY------------HLD  130 (158)
Q Consensus        83 ~~------------~---~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~ia~~~l~------------~lD  130 (158)
                      .+            .   ..+.++++++.+++.+..+ ..+     ..|||||||||+||++++.            +||
T Consensus       973 ~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~-~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140        973 SLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD-AIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhC-CccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence            00            0   1134677899999976544 333     5899999999999988775            799


Q ss_pred             HHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          131 TQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       131 ~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      ..+...+++.+++.   +.|||+++||++
T Consensus      1052 ~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140       1052 ARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            99999999888765   579999999986

>PTZ00243 ABC transporter; Provisional

Probab=99.86  E-value=1.6e-21  Score=178.23  Aligned_cols=127  Identities=23%  Similarity=0.270  Sum_probs=87.4

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------ceeeeccccch-------hhHhh-----HHHHH
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------KLRIGRHSRHL-------EDLLT-----MEEAV   90 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------~~~~~~~~~~~-------~~~~~-----~~~~~   90 (158)
                      +++|+|+||+|++|++++|+||||||||||+++|++....       ...+++.+|..       .+...     ..++.
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~  752 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARL  752 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHH
Confidence            4589999999999999999999999999999999975422       12355554431       11110     01112


Q ss_pred             H---------HHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHH--hhc-
Q 044538           91 H---------AKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL--DEF-  144 (158)
Q Consensus        91 ~---------~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l--~~~-  144 (158)
                      .         +.++.+  |+..... .+..+||||||||++||||+..            +||+.....+++.+  ... 
T Consensus       753 ~~~~~~~~l~~~l~~l~~g~~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~  831 (1560)
T PTZ00243        753 ADAVRVSQLEADLAQLGGGLETEIG-EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA  831 (1560)
T ss_pred             HHHHHHhhhHHHHHHhhccchHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhC
Confidence            2         233334  4443333 4568999999999999999775            69998887776532  222 


Q ss_pred             CCeEEEEeecCCC
Q 044538          145 AGGVVLVSHDSRL  157 (158)
Q Consensus       145 ~~tvi~vtHd~~~  157 (158)
                      +.|+|++|||+++
T Consensus       832 ~~TvIlvTH~~~~  844 (1560)
T PTZ00243        832 GKTRVLATHQVHV  844 (1560)
T ss_pred             CCEEEEEeCCHHH
Confidence            4799999999754

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.86  E-value=8e-22  Score=155.61  Aligned_cols=109  Identities=26%  Similarity=0.328  Sum_probs=79.3

Q ss_pred             EECCCCCCcchHHHHHHhhhhc------------------ceeeeccccch--------hhHhh------------HHHH
Q 044538           48 IVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSRHL--------EDLLT------------MEEA   89 (158)
Q Consensus        48 liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~~~--------~~~~~------------~~~~   89 (158)
                      |+||||||||||+++|++....                  ...+++.++..        .+.+.            ..++
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~   80 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR   80 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence            5899999999999999964321                  01234333321        11110            1235


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEee
Q 044538           90 VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSH  153 (158)
Q Consensus        90 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtH  153 (158)
                      +.++++.+++.+..+ +++.+|||||||||+||++++.            +||+..+..+.+.+++.    +.|+|+|||
T Consensus        81 ~~~~l~~~~l~~~~~-~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH  159 (325)
T TIGR01187        81 VLEALRLVQLEEFAD-RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH  159 (325)
T ss_pred             HHHHHHHcCCcchhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            677899999987554 5679999999999999998775            69999999998888653    579999999


Q ss_pred             cCCC
Q 044538          154 DSRL  157 (158)
Q Consensus       154 d~~~  157 (158)
                      |+++
T Consensus       160 d~~e  163 (325)
T TIGR01187       160 DQEE  163 (325)
T ss_pred             CHHH
Confidence            9754

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=7.3e-22  Score=159.67  Aligned_cols=147  Identities=38%  Similarity=0.563  Sum_probs=118.6

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---------cceeeeccccchh
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---------QKLRIGRHSRHLE   81 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---------~~~~~~~~~~~~~   81 (158)
                      ..|.+.+.++ +|.|..+..+.+.++++++..-..++++|+||+||||+++++.+...         .+.++++..|+-.
T Consensus       359 ~~p~l~i~~V-~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhv  437 (582)
T KOG0062|consen  359 SPPNLRISYV-AFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHV  437 (582)
T ss_pred             CCCeeEEEee-eccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhh
Confidence            3456777776 88887655357899999999999999999999999999999986322         3445666655433


Q ss_pred             hHhh----------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHH
Q 044538           82 DLLT----------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQS  133 (158)
Q Consensus        82 ~~~~----------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~  133 (158)
                      +.+.                .++++++.+..||++.....+++..||||||-||++|+..+.            +||.++
T Consensus       438 d~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ds  517 (582)
T KOG0062|consen  438 DFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS  517 (582)
T ss_pred             hHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHH
Confidence            2221                246788899999999877777788999999999999876553            799999


Q ss_pred             HHHHHHHHhhcCCeEEEEeecCCCC
Q 044538          134 IVAVAVTLDEFAGGVVLVSHDSRLI  158 (158)
Q Consensus       134 ~~~l~~~l~~~~~tvi~vtHd~~~~  158 (158)
                      ...+.+.|+.+.++||+||||.+|+
T Consensus       518 l~AL~~Al~~F~GGVv~VSHd~~fi  542 (582)
T KOG0062|consen  518 LGALAKALKNFNGGVVLVSHDEEFI  542 (582)
T ss_pred             HHHHHHHHHhcCCcEEEEECcHHHH
Confidence            9999999999999999999998763

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.85  E-value=3.9e-21  Score=147.18  Aligned_cols=69  Identities=20%  Similarity=0.247  Sum_probs=55.2

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEE
Q 044538           89 AVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVL  150 (158)
Q Consensus        89 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~  150 (158)
                      +..++++.+|+......+++.+|||||+||++||++++.               +||+.....+.+.++++   +.|+|+
T Consensus       148 ~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIi  227 (261)
T cd03271         148 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV  227 (261)
T ss_pred             HHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            345678889997633346779999999999999988764               48999999888887664   579999


Q ss_pred             EeecCCC
Q 044538          151 VSHDSRL  157 (158)
Q Consensus       151 vtHd~~~  157 (158)
                      ||||+++
T Consensus       228 itH~~~~  234 (261)
T cd03271         228 IEHNLDV  234 (261)
T ss_pred             EeCCHHH
Confidence            9999864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.85  E-value=2e-21  Score=177.19  Aligned_cols=126  Identities=21%  Similarity=0.261  Sum_probs=85.9

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce----eeeccccch-------hhHhh-----HHHHHH
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL----RIGRHSRHL-------EDLLT-----MEEAVH   91 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~----~~~~~~~~~-------~~~~~-----~~~~~~   91 (158)
                      ++|+|+||+|++|++++|+||||||||||+++|++....   .+    .+++.+|..       .++..     ..++..
T Consensus       440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~  519 (1490)
T TIGR01271       440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYT  519 (1490)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHH
Confidence            579999999999999999999999999999999975421   11    245544431       11110     011122


Q ss_pred             HHHHHcCCC---------C--CCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHH-Hhhc--C
Q 044538           92 AKLRKFGLP---------G--HNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVT-LDEF--A  145 (158)
Q Consensus        92 ~~l~~~~l~---------~--~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~-l~~~--~  145 (158)
                      ++++..++.         +  ... .+..+||||||||++||||+..            +||+.....+.+. +.+.  +
T Consensus       520 ~~~~~~~L~~~l~~l~~g~~t~vg-~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~  598 (1490)
T TIGR01271       520 SVIKACQLEEDIALFPEKDKTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN  598 (1490)
T ss_pred             HHHHHHhHHHHHHhcccccccccc-CcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence            222222221         1  111 2357899999999999999765            6999999998874 4443  5


Q ss_pred             CeEEEEeecCCC
Q 044538          146 GGVVLVSHDSRL  157 (158)
Q Consensus       146 ~tvi~vtHd~~~  157 (158)
                      .|+|+||||++.
T Consensus       599 ~tvilvtH~~~~  610 (1490)
T TIGR01271       599 KTRILVTSKLEH  610 (1490)
T ss_pred             CeEEEEeCChHH
Confidence            799999999764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.85  E-value=8.8e-21  Score=172.03  Aligned_cols=126  Identities=17%  Similarity=0.177  Sum_probs=91.8

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-------cc----------------eeeeccccch------
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-------QK----------------LRIGRHSRHL------   80 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-------~~----------------~~~~~~~~~~------   80 (158)
                      +.+|+|+|+++++||+++|+||||||||||+|+|++...       ..                ..+++..|..      
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l  153 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL  153 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence            468999999999999999999999999999999997521       00                0133333220      


Q ss_pred             --hhHh----------------hHH---HH-HHHHHHHcCCCCCCCC----CCCCCCChHHHHHHHHHHHHhh-------
Q 044538           81 --EDLL----------------TME---EA-VHAKLRKFGLPGHNHL----TPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        81 --~~~~----------------~~~---~~-~~~~l~~~~l~~~~~~----~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                        .+.+                ...   ++ ++.+++.+|+.+..+.    ..+..|||||||||+||++++.       
T Consensus       154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll  233 (1394)
T TIGR00956       154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW  233 (1394)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence              0000                011   12 2457888999764432    2346799999999999988775       


Q ss_pred             -----CCCHHHHHHHHHHHhhc----CCeEEEEeecC
Q 044538          128 -----HLDTQSIVAVAVTLDEF----AGGVVLVSHDS  155 (158)
Q Consensus       128 -----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~  155 (158)
                           +||..+...+.+.|++.    +.|+|+++|+.
T Consensus       234 DEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~  270 (1394)
T TIGR00956       234 DNATRGLDSATALEFIRALKTSANILDTTPLVAIYQC  270 (1394)
T ss_pred             eCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence                 79999999999888764    46899999996

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.85  E-value=3.8e-21  Score=133.57  Aligned_cols=97  Identities=35%  Similarity=0.439  Sum_probs=68.6

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e-----------------eeeccccc--hhhHh-----h
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L-----------------RIGRHSRH--LEDLL-----T   85 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~-----------------~~~~~~~~--~~~~~-----~   85 (158)
                      |+|+||+|++|++++|+|+||||||||+++|++.....   +                 .+++.++.  +....     .
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~   80 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE   80 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            68999999999999999999999999999999754321   1                 12222222  11111     2


Q ss_pred             HHHHHHHHHHHcCCCCCCC---CCCCCCCChHHHHHHHHHHHHhhCC
Q 044538           86 MEEAVHAKLRKFGLPGHNH---LTPIANLSGGQKVRVMFTLVSMYHL  129 (158)
Q Consensus        86 ~~~~~~~~l~~~~l~~~~~---~~~~~~LSgGqkqrv~ia~~~l~~l  129 (158)
                      ..+++.++++.+++.....   .++...||+|||||++||++++.+.
T Consensus        81 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~  127 (137)
T PF00005_consen   81 SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNP  127 (137)
T ss_dssp             HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTS
T ss_pred             ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCC
Confidence            2356778888888765322   1234899999999999999887653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PLN03140 ABC transporter G family member; Provisional

Probab=99.85  E-value=2.8e-21  Score=175.40  Aligned_cols=126  Identities=21%  Similarity=0.201  Sum_probs=91.9

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeeeccccch--------h
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIGRHSRHL--------E   81 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~~~~~~~--------~   81 (158)
                      ..+|+|+|+.+++|++++|+||||||||||+++|++.....                    ..+++..|..        .
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~  257 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK  257 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence            46899999999999999999999999999999999753211                    1233333320        0


Q ss_pred             hHhh-------------------HHH---------------------------HHHHHHHHcCCCCCCC----CCCCCCC
Q 044538           82 DLLT-------------------MEE---------------------------AVHAKLRKFGLPGHNH----LTPIANL  111 (158)
Q Consensus        82 ~~~~-------------------~~~---------------------------~~~~~l~~~~l~~~~~----~~~~~~L  111 (158)
                      +.+.                   ..+                           .++.+++.+|+++..+    +..+..|
T Consensus       258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl  337 (1470)
T PLN03140        258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI  337 (1470)
T ss_pred             HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence            0000                   000                           1345788899975331    2356789


Q ss_pred             ChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecC
Q 044538          112 SGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDS  155 (158)
Q Consensus       112 SgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~  155 (158)
                      ||||||||+||++++.            +||..+..++.+.|++.    +.|+|+++|+.
T Consensus       338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp  397 (1470)
T PLN03140        338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP  397 (1470)
T ss_pred             CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence            9999999999988764            79999999999988765    46999999985

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.85  E-value=5.3e-21  Score=155.49  Aligned_cols=140  Identities=24%  Similarity=0.361  Sum_probs=101.0

Q ss_pred             hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ceeeecccc--------------
Q 044538           16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLRIGRHSR--------------   78 (158)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~~~~~~~--------------   78 (158)
                      .+.++ ++.|.+  ..+++|++|++.+|+.+||+|+|||||||+++++.+...+   ++.+....+              
T Consensus        77 k~~sl-s~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~  153 (614)
T KOG0927|consen   77 KIESL-SLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVV  153 (614)
T ss_pred             eeeee-eeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHh
Confidence            34444 666654  4579999999999999999999999999999999864321   100000000              


Q ss_pred             -----------chhhH-------------------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538           79 -----------HLEDL-------------------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        79 -----------~~~~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia  122 (158)
                                 ...+.                         -+.+.++..++..+|+......+.+..||||++.|+++|
T Consensus       154 ~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA  233 (614)
T KOG0927|consen  154 METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA  233 (614)
T ss_pred             hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH
Confidence                       00000                         001233445666677766666677889999999999999


Q ss_pred             HHHhh------------CCCHHHHHHHHHHHhhcCC-eEEEEeecCCCC
Q 044538          123 LVSMY------------HLDTQSIVAVAVTLDEFAG-GVVLVSHDSRLI  158 (158)
Q Consensus       123 ~~~l~------------~lD~~~~~~l~~~l~~~~~-tvi~vtHd~~~~  158 (158)
                      ++++.            |||.+++.++.+.|.++.. ++|+++|+.+++
T Consensus       234 r~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfl  282 (614)
T KOG0927|consen  234 RALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFL  282 (614)
T ss_pred             HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhh
Confidence            99764            8999999999999999987 899999998763

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.84  E-value=3.7e-21  Score=168.34  Aligned_cols=135  Identities=21%  Similarity=0.335  Sum_probs=105.7

Q ss_pred             eeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccc
Q 044538           21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRH   79 (158)
Q Consensus        21 ~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~   79 (158)
                      +++.|+.... +++++||.|++||+.|+.|+|||||||+++++.|....                     ...+||.+|.
T Consensus       570 L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~  648 (885)
T KOG0059|consen  570 LSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQF  648 (885)
T ss_pred             eeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCch
Confidence            3777876544 89999999999999999999999999999999864321                     1125665553


Q ss_pred             h--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538           80 L--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------  127 (158)
Q Consensus        80 ~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------  127 (158)
                      .  .+.++                  ..+.++..++.+++.+... ++++.+|||+|+|+++|.|++.            
T Consensus       649 d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-~~~~~ySgG~kRkLs~aialig~p~vi~LDEPst  727 (885)
T KOG0059|consen  649 DALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-KQVRTYSGGNKRRLSFAIALIGDPSVILLDEPST  727 (885)
T ss_pred             hhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-cchhhCCCcchhhHHHHHHHhcCCCEEEecCCCC
Confidence            1  11111                  2345778899999988766 5789999999999999988765            


Q ss_pred             CCCHHHHHHHHHHHhhcC---CeEEEEeecCCC
Q 044538          128 HLDTQSIVAVAVTLDEFA---GGVVLVSHDSRL  157 (158)
Q Consensus       128 ~lD~~~~~~l~~~l~~~~---~tvi~vtHd~~~  157 (158)
                      ++||.+++.+++.+++..   .++|++||.+++
T Consensus       728 GmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE  760 (885)
T KOG0059|consen  728 GLDPKARRHLWDIIARLRKNGKAIILTSHSMEE  760 (885)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence            699999999999987653   399999999875

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.83  E-value=3e-20  Score=165.44  Aligned_cols=144  Identities=22%  Similarity=0.269  Sum_probs=100.0

Q ss_pred             hhhhhheeeeEEcCC-CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------ceeeeccccchh---
Q 044538           13 PMLQLIEVISFSYPN-LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------KLRIGRHSRHLE---   81 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~-~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------~~~~~~~~~~~~---   81 (158)
                      +.+.+.+. +++.+. ...+.|+||||+|++|+.+||+||-|||||+|+.+|.|.-..       +..++|.+|...   
T Consensus       517 ~~i~i~~~-sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~n  595 (1381)
T KOG0054|consen  517 NAIEIKNG-SFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQN  595 (1381)
T ss_pred             ceEEEeee-eEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhC
Confidence            34555565 777765 334589999999999999999999999999999999875321       223566665421   


Q ss_pred             ----hHh-----hHHHHHHHHHHHcCCCCCCCC----------CCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538           82 ----DLL-----TMEEAVHAKLRKFGLPGHNHL----------TPIANLSGGQKVRVMFTLVSMY------------HLD  130 (158)
Q Consensus        82 ----~~~-----~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~ia~~~l~------------~lD  130 (158)
                          ++.     -.+++.++.++...|..+...          .+.-+||||||||+++|||.-.            .+|
T Consensus       596 gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVD  675 (1381)
T KOG0054|consen  596 GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVD  675 (1381)
T ss_pred             CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhh
Confidence                110     123566667766665432211          1335899999999999998654            578


Q ss_pred             HHHHHHHHHHHh-hc--CCeEEEEeecCCC
Q 044538          131 TQSIVAVAVTLD-EF--AGGVVLVSHDSRL  157 (158)
Q Consensus       131 ~~~~~~l~~~l~-~~--~~tvi~vtHd~~~  157 (158)
                      .+.-..+.+..- ..  ++|+|+|||.+++
T Consensus       676 ahvg~~if~~ci~~~L~~KT~ILVTHql~~  705 (1381)
T KOG0054|consen  676 AHVGKHIFEECIRGLLRGKTVILVTHQLQF  705 (1381)
T ss_pred             HhhhHHHHHHHHHhhhcCCEEEEEeCchhh
Confidence            888777776543 22  3799999998765

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=1.2e-19  Score=153.32  Aligned_cols=127  Identities=29%  Similarity=0.333  Sum_probs=96.0

Q ss_pred             CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeeeccccc--hhhHh--
Q 044538           29 QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIGRHSRH--LEDLL--   84 (158)
Q Consensus        29 ~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~~~~~~--~~~~~--   84 (158)
                      .+.+|++||.++++||++||+||+|||||||+++++++....                    ...++..|+  +.+.+  
T Consensus        42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV  121 (613)
T KOG0061|consen   42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV  121 (613)
T ss_pred             cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence            357899999999999999999999999999999999754321                    113333332  11111  


Q ss_pred             -------------------hHHHHHHHHHHHcCCCCCCCCCCCC-----CCChHHHHHHHHHHHHhh------------C
Q 044538           85 -------------------TMEEAVHAKLRKFGLPGHNHLTPIA-----NLSGGQKVRVMFTLVSMY------------H  128 (158)
Q Consensus        85 -------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~ia~~~l~------------~  128 (158)
                                         ...++++++++.+|+..-. +..++     .+|||||+||+||.-++.            +
T Consensus       122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~-~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG  200 (613)
T KOG0061|consen  122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCA-DTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG  200 (613)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhc-cceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence                               1246788999999998533 34444     599999999999877664            6


Q ss_pred             CCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      ||..+...+++.|+++   +.|||++=|++.
T Consensus       201 LDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs  231 (613)
T KOG0061|consen  201 LDSFSALQVVQLLKRLARSGRTVICTIHQPS  231 (613)
T ss_pred             cchhhHHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence            9999998888888765   579999999864

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.82  E-value=5.6e-20  Score=152.80  Aligned_cols=141  Identities=23%  Similarity=0.258  Sum_probs=103.5

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce------eeeccccch---
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL------RIGRHSRHL---   80 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~------~~~~~~~~~---   80 (158)
                      ..+.+.|+ ++.-+.+. ..+++.||++++|+.+.|.||||||||||+|+|+|..+.   ++      ..-+.+|.+   
T Consensus       391 ~~i~~~nl-~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p  468 (604)
T COG4178         391 HGITLENL-SLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP  468 (604)
T ss_pred             ceeEEeee-eEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCC
Confidence            45666666 77777665 579999999999999999999999999999999975431   10      011122211   


Q ss_pred             ----hhHh--------hHHHHHHHHHHHcCCCCCCC------CCCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538           81 ----EDLL--------TMEEAVHAKLRKFGLPGHNH------LTPIANLSGGQKVRVMFTLVSMY------------HLD  130 (158)
Q Consensus        81 ----~~~~--------~~~~~~~~~l~~~~l~~~~~------~~~~~~LSgGqkqrv~ia~~~l~------------~lD  130 (158)
                          .+.+        -.++.+.+.|.++||.+...      ++. ..||+|||||+++||.++.            +||
T Consensus       469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~-~vLS~GEqQRlafARilL~kP~~v~LDEATsALD  547 (604)
T COG4178         469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWD-RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD  547 (604)
T ss_pred             CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHh-hhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence                0000        12466778888888864211      122 5799999999999988775            699


Q ss_pred             HHHHHHHHHHHhh--cCCeEEEEeecCC
Q 044538          131 TQSIVAVAVTLDE--FAGGVVLVSHDSR  156 (158)
Q Consensus       131 ~~~~~~l~~~l~~--~~~tvi~vtHd~~  156 (158)
                      +++...+.+.+++  ...|||-|+|...
T Consensus       548 e~~e~~l~q~l~~~lp~~tvISV~Hr~t  575 (604)
T COG4178         548 EETEDRLYQLLKEELPDATVISVGHRPT  575 (604)
T ss_pred             hHHHHHHHHHHHhhCCCCEEEEeccchh
Confidence            9999999999988  5689999999754

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.82  E-value=6.5e-20  Score=136.81  Aligned_cols=123  Identities=20%  Similarity=0.212  Sum_probs=78.7

Q ss_pred             eeeeEEee-CCCEEEEECCCCCCcchHHHHHHhh----hhcc----------------eeeeccccchhh--------Hh
Q 044538           34 SNVDMGID-MGTCVAIVGPNDTGKSPLPNLLAVR----RRQK----------------LRIGRHSRHLED--------LL   84 (158)
Q Consensus        34 ~~isl~i~-~G~~~~liG~nGsGKSTLl~~i~~~----~~~~----------------~~~~~~~~~~~~--------~~   84 (158)
                      .+++|+.. +|++++|+||||||||||+++|+..    ....                ..++..++....        .+
T Consensus        18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl   97 (213)
T cd03279          18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGL   97 (213)
T ss_pred             eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCC
Confidence            46677654 5899999999999999999999731    1000                011111111000        01


Q ss_pred             hHHHHHHH-HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh----------------------hCCCHHHHHHHHHHH
Q 044538           85 TMEEAVHA-KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM----------------------YHLDTQSIVAVAVTL  141 (158)
Q Consensus        85 ~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l----------------------~~lD~~~~~~l~~~l  141 (158)
                      ...+..+. .+...++..... +++.+||+||+||+++|++++                      .++|+.....+.+.+
T Consensus        98 ~~~~~~~~~~l~~g~l~~~l~-~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l  176 (213)
T cd03279          98 DYDQFTRIVLLPQGEFDRFLA-RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATAL  176 (213)
T ss_pred             CHHHHHHhhhhhhcchHHHhc-CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            11111111 233344444433 567899999999999998874                      168999988888877


Q ss_pred             hhc---CCeEEEEeecCCC
Q 044538          142 DEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       142 ~~~---~~tvi~vtHd~~~  157 (158)
                      +++   +.|+|+||||+++
T Consensus       177 ~~~~~~~~tii~itH~~~~  195 (213)
T cd03279         177 ELIRTENRMVGVISHVEEL  195 (213)
T ss_pred             HHHHhCCCEEEEEECchHH
Confidence            665   4699999999864

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.81  E-value=2e-19  Score=142.22  Aligned_cols=140  Identities=24%  Similarity=0.325  Sum_probs=93.7

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---eeeeccc---cc---------
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LRIGRHS---RH---------   79 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~~~~~~---~~---------   79 (158)
                      +++.++ .|.|.... .-+.+||++|++||++.|+|.|||||||+++++.|..++.   +.....+   ..         
T Consensus       323 lelrnv-rfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfS  400 (546)
T COG4615         323 LELRNV-RFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS  400 (546)
T ss_pred             eeeeee-eeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHH
Confidence            555555 77776543 4689999999999999999999999999999999764331   1111000   00         


Q ss_pred             -------hhhH-h-----hHHHHHHHHHHHcCCCCCCC--CC--CCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538           80 -------LEDL-L-----TMEEAVHAKLRKFGLPGHNH--LT--PIANLSGGQKVRVMFTLVSMY------------HLD  130 (158)
Q Consensus        80 -------~~~~-~-----~~~~~~~~~l~~~~l~~~~~--~~--~~~~LSgGqkqrv~ia~~~l~------------~lD  130 (158)
                             +++. +     ...+.+..+++++.+.....  +.  ..-.||-|||+|+++..|++.            +-|
T Consensus       401 avFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQD  480 (546)
T COG4615         401 AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD  480 (546)
T ss_pred             HHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCC
Confidence                   0000 0     11255666777766543211  11  125799999999999766653            578


Q ss_pred             HHHHHHHHHH----HhhcCCeEEEEeecCC
Q 044538          131 TQSIVAVAVT----LDEFAGGVVLVSHDSR  156 (158)
Q Consensus       131 ~~~~~~l~~~----l~~~~~tvi~vtHd~~  156 (158)
                      |.-++++.+.    +++.++||+.||||-.
T Consensus       481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd~  510 (546)
T COG4615         481 PAFRREFYQVLLPLLKEQGKTIFAISHDDH  510 (546)
T ss_pred             hHHHHHHHHHHhHHHHHhCCeEEEEecCch
Confidence            8887776654    5788999999999953

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.81  E-value=1.3e-20  Score=134.83  Aligned_cols=123  Identities=25%  Similarity=0.265  Sum_probs=86.7

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceee--e-----------------ccccc--------hhhH--
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRI--G-----------------RHSRH--------LEDL--   83 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~--~-----------------~~~~~--------~~~~--   83 (158)
                      |-.+|.++..||++-++||||||||||+-.+++.......+  +                 |..+.        .+.+  
T Consensus        15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~   94 (248)
T COG4138          15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLT   94 (248)
T ss_pred             ccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhh
Confidence            66899999999999999999999999999888643221111  1                 00000        0111  


Q ss_pred             -----hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------------------CCCHHHHHHHHH
Q 044538           84 -----LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------------------HLDTQSIVAVAV  139 (158)
Q Consensus        84 -----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------------------~lD~~~~~~l~~  139 (158)
                           .+....+.++...++++++.. +.+++|||||-|||-+|+..+.                   .||......+..
T Consensus        95 L~qP~~~~a~~i~~i~~~L~l~DKL~-Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr  173 (248)
T COG4138          95 LHQPDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR  173 (248)
T ss_pred             hcCchHHHHHHHHHHHhhhcccchhh-hhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH
Confidence                 122355677788899988776 5679999999999999754332                   478766665555


Q ss_pred             HHhh---cCCeEEEEeecCC
Q 044538          140 TLDE---FAGGVVLVSHDSR  156 (158)
Q Consensus       140 ~l~~---~~~tvi~vtHd~~  156 (158)
                      .+.+   .+.+|||++||++
T Consensus       174 ll~~~c~~G~~vims~HDLN  193 (248)
T COG4138         174 LLSALCQQGLAIVMSSHDLN  193 (248)
T ss_pred             HHHHHHhCCcEEEEeccchh
Confidence            5544   4679999999986

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.79  E-value=7.8e-19  Score=133.05  Aligned_cols=120  Identities=23%  Similarity=0.282  Sum_probs=78.5

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh------------hc-----c--------ee-------------
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR------------RQ-----K--------LR-------------   72 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~------------~~-----~--------~~-------------   72 (158)
                      .++++++     |++++|+||||||||||+++|++..            ..     .        ..             
T Consensus        16 ~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~   90 (243)
T cd03272          16 TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID   90 (243)
T ss_pred             cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC
Confidence            3567776     7899999999999999999997320            00     0        00             


Q ss_pred             ---------eeccccc--hhhHhhHHHHHHHHHHHcCCCCC-------------------CCCCCCCCCChHHHHHHHHH
Q 044538           73 ---------IGRHSRH--LEDLLTMEEAVHAKLRKFGLPGH-------------------NHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        73 ---------~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~-------------------~~~~~~~~LSgGqkqrv~ia  122 (158)
                               +++.++.  +.+.....+++...++.+++...                   ....++.+||||||||++||
T Consensus        91 ~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la  170 (243)
T cd03272          91 KEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALA  170 (243)
T ss_pred             CCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHH
Confidence                     0000000  00000112455667777776431                   11245689999999999999


Q ss_pred             HHHh----h------------CCCHHHHHHHHHHHhhc--CCeEEEEeecC
Q 044538          123 LVSM----Y------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDS  155 (158)
Q Consensus       123 ~~~l----~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~  155 (158)
                      ++++    .            +||+.....+++.++++  +.++|++||+.
T Consensus       171 ~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~  221 (243)
T cd03272         171 LIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP  221 (243)
T ss_pred             HHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            8874    1            59999999999998876  35778888874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.79  E-value=1.2e-18  Score=128.65  Aligned_cols=121  Identities=17%  Similarity=0.187  Sum_probs=80.3

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeeeccccc--hhh-Hh--hHH
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIGRHSRH--LED-LL--TME   87 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~~~~~~--~~~-~~--~~~   87 (158)
                      ++++++++.+| +.+|+||||||||||+..|.......                    ..+....+.  ..+ ..  ...
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~   90 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQ   90 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHH
Confidence            56788888887 88999999999999999886321100                    001111110  011 01  112


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh----h------------CCCHHHHHHHHHHHhhc-----C-
Q 044538           88 EAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM----Y------------HLDTQSIVAVAVTLDEF-----A-  145 (158)
Q Consensus        88 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l----~------------~lD~~~~~~l~~~l~~~-----~-  145 (158)
                      +.+.++++.   .... .+++.+||+|||||++||+++.    .            ++|......+.+.+.+.     + 
T Consensus        91 ~~~~~~l~~---~~~~-~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~  166 (198)
T cd03276          91 DMARSFLTS---NKAA-VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGR  166 (198)
T ss_pred             HHHHHHhcc---cccc-CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCc
Confidence            455566655   3333 3577999999999999988763    2            69999988888877653     2 


Q ss_pred             CeEEEEeecCCCC
Q 044538          146 GGVVLVSHDSRLI  158 (158)
Q Consensus       146 ~tvi~vtHd~~~~  158 (158)
                      .+||++||+++.+
T Consensus       167 ~~iii~th~~~~i  179 (198)
T cd03276         167 QFIFITPQDISGL  179 (198)
T ss_pred             EEEEEECCccccc
Confidence            4799999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=4.7e-19  Score=140.82  Aligned_cols=140  Identities=28%  Similarity=0.325  Sum_probs=93.0

Q ss_pred             hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538           16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR   75 (158)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~   75 (158)
                      .+.++ +|.|... +++|+++||++++|+.++++||+|+||||+++++......                    +..+|.
T Consensus       264 ~F~~V-~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~  341 (497)
T COG5265         264 AFINV-SFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI  341 (497)
T ss_pred             EEEEE-Eeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCc
Confidence            34454 8888765 4689999999999999999999999999999998621110                    112444


Q ss_pred             cccch--h-hHh----------hHHHHHHHHHHHcCCCCC------CCCC----CCCCCChHHHHHHHHHHHHhh-----
Q 044538           76 HSRHL--E-DLL----------TMEEAVHAKLRKFGLPGH------NHLT----PIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        76 ~~~~~--~-~~~----------~~~~~~~~~l~~~~l~~~------~~~~----~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      .+|+.  + +..          ...+++..+.+...+.+.      ..+.    +.-.|||||||||+|||.++.     
T Consensus       342 VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il  421 (497)
T COG5265         342 VPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPIL  421 (497)
T ss_pred             CcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEE
Confidence            44431  1 100          001333333333322211      1111    224799999999999998775     


Q ss_pred             -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                             .||....+++...|++.  +.|.++|.|.+.-
T Consensus       422 ~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlst  460 (497)
T COG5265         422 ILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLST  460 (497)
T ss_pred             EEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhh
Confidence                   58999999999999876  4689999998753

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.79  E-value=3e-19  Score=143.25  Aligned_cols=133  Identities=24%  Similarity=0.401  Sum_probs=91.0

Q ss_pred             EEcCCCCCcceeeeeEEe-----eCCCEEEEECCCCCCcchHHHHHHhhhh------cceeeeccccchhhHh--hHH--
Q 044538           23 FSYPNLQDIRLSNVDMGI-----DMGTCVAIVGPNDTGKSPLPNLLAVRRR------QKLRIGRHSRHLEDLL--TME--   87 (158)
Q Consensus        23 ~~~~~~~~~~l~~isl~i-----~~G~~~~liG~nGsGKSTLl~~i~~~~~------~~~~~~~~~~~~~~~~--~~~--   87 (158)
                      +.|+.-.+ .+.++.|++     ..||+++++||||-||||+.++|+|...      ....++|.+|+.....  ++.  
T Consensus       343 v~y~~~~k-~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~  421 (591)
T COG1245         343 VEYPDLKK-TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDL  421 (591)
T ss_pred             eecchhee-ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHH
Confidence            44544322 355666665     5567899999999999999999997543      2355677666543211  111  


Q ss_pred             ------------HHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhh
Q 044538           88 ------------EAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDE  143 (158)
Q Consensus        88 ------------~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~  143 (158)
                                  .--.++++-++++.... +++.+|||||.|||+||+++..            +||.+.+..+.+.+++
T Consensus       422 l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR  500 (591)
T COG1245         422 LRSAIRSAFGSSYFKTEIVKPLNLEDLLE-RPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR  500 (591)
T ss_pred             HHHhhhhhcccchhHHhhcCccchHHHHh-cccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHH
Confidence                        11234556677766544 6889999999999999877654            6888877666665554


Q ss_pred             c----CCeEEEEeecCCC
Q 044538          144 F----AGGVVLVSHDSRL  157 (158)
Q Consensus       144 ~----~~tvi~vtHd~~~  157 (158)
                      +    ..|.++|.||+.+
T Consensus       501 ~~e~~~kta~vVdHDi~~  518 (591)
T COG1245         501 FIENNEKTALVVDHDIYM  518 (591)
T ss_pred             HHhhcCceEEEEecceeh
Confidence            3    5799999999754

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.78  E-value=2.2e-18  Score=141.24  Aligned_cols=141  Identities=21%  Similarity=0.212  Sum_probs=99.0

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c---------eeeeccccch
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K---------LRIGRHSRHL   80 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~---------~~~~~~~~~~   80 (158)
                      +++++.++ ++.-++....+++++||+|++|+.+.|+||||||||+|+|++++.+..   .         ..+-+.+|.+
T Consensus       432 n~i~~e~v-~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrP  510 (659)
T KOG0060|consen  432 NAIEFEEV-SLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRP  510 (659)
T ss_pred             ceEEeeee-eecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCC
Confidence            46777776 777777444577899999999999999999999999999999975431   0         0112222221


Q ss_pred             ------------hhH--------hhHHHHHHHHHHHcCCCCC-----------CCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           81 ------------EDL--------LTMEEAVHAKLRKFGLPGH-----------NHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        81 ------------~~~--------~~~~~~~~~~l~~~~l~~~-----------~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                                  .+.        ...++.+.+.|+.+++.+.           ..++ ...||+||+||+++||....  
T Consensus       511 Ymt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW-~dvLS~GEqQRLa~ARLfy~kP  589 (659)
T KOG0060|consen  511 YMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDW-MDVLSPGEQQRLAFARLFYHKP  589 (659)
T ss_pred             CccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccH-HhhcCHHHHHHHHHHHHHhcCC
Confidence                        010        0012455556665544321           1222 36899999999999876553  


Q ss_pred             ----------CCCHHHHHHHHHHHhhcCCeEEEEeecC
Q 044538          128 ----------HLDTQSIVAVAVTLDEFAGGVVLVSHDS  155 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~~~tvi~vtHd~  155 (158)
                                ++|.+....+.+.+++.+.|.|-|+|..
T Consensus       590 k~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRk  627 (659)
T KOG0060|consen  590 KFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRK  627 (659)
T ss_pred             ceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHH
Confidence                      5778888899999999999999999974

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=2.1e-18  Score=153.84  Aligned_cols=142  Identities=19%  Similarity=0.204  Sum_probs=100.9

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------------------cceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------------------QKLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------------------~~~~~   73 (158)
                      -+++.++ +++|..+..++|++|||+|++||.+||+|..|||||||..++-....                    -+.++
T Consensus      1138 ~I~f~~~-~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1138 EIEFEDL-SLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred             eEEEEEe-EEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence            4677776 99998776789999999999999999999999999999888752110                    01122


Q ss_pred             eccccch-------------hhHhhHHHHHHHHHHHcCCCCC-------CC---CCCCCCCChHHHHHHHHHHHHhh---
Q 044538           74 GRHSRHL-------------EDLLTMEEAVHAKLRKFGLPGH-------NH---LTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        74 ~~~~~~~-------------~~~~~~~~~~~~~l~~~~l~~~-------~~---~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      +..+|++             .+..+ ++++.++|+...+.+.       .+   .....++|-||||.+|+|||++.   
T Consensus      1217 sIIPQdPvLFsGTvR~NLDPf~e~s-D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRFNLDPFDEYS-DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred             eeeCCCCceecCccccccCcccccC-HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence            2233321             11111 3556666665544221       11   11236899999999999999886   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               ++|+++-..+.+.+++.  .+|||.|-|+++-
T Consensus      1296 ILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~T 1336 (1381)
T KOG0054|consen 1296 ILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNT 1336 (1381)
T ss_pred             EEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccch
Confidence                     58999988899999763  4799999999864

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.77  E-value=1.4e-18  Score=127.30  Aligned_cols=137  Identities=16%  Similarity=0.220  Sum_probs=96.5

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---cee-----------------e
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR-----------------I   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~-----------------~   73 (158)
                      .+++.+. .|+|+... +++-|+|++++.|....++|.||||||||+++++|....   .++                 .
T Consensus        13 aievsgl-~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl   90 (291)
T KOG2355|consen   13 AIEVSGL-QFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL   90 (291)
T ss_pred             eEEEecc-EEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence            4566666 89998655 689999999999999999999999999999999864210   000                 0


Q ss_pred             eccccch------------hhHhhH-----------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           74 GRHSRHL------------EDLLTM-----------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        74 ~~~~~~~------------~~~~~~-----------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      .|....+            ...+..           .++-+++++.++++-   +++.+.+|-|||+||.|++-++.   
T Consensus        91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl---~WRmHkvSDGqrRRVQicMGLL~Pfk  167 (291)
T KOG2355|consen   91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDL---RWRMHKVSDGQRRRVQICMGLLKPFK  167 (291)
T ss_pred             eEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccc---eEEEeeccccchhhhHHHHhccccee
Confidence            0100000            000000           144556677777653   24678999999999999766553   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc----CCeEEEEeecC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF----AGGVVLVSHDS  155 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~  155 (158)
                               +||.-++..+++.+++.    +.||++.||-.
T Consensus       168 VLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF  208 (291)
T KOG2355|consen  168 VLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF  208 (291)
T ss_pred             EEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec
Confidence                     68999999999998653    57999999954

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.76  E-value=7.5e-19  Score=131.08  Aligned_cols=121  Identities=22%  Similarity=0.323  Sum_probs=79.8

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------cceeeeccccc---------------hhh-----H
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------QKLRIGRHSRH---------------LED-----L   83 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------~~~~~~~~~~~---------------~~~-----~   83 (158)
                      ..+++++++     ++++|+|||||||||++++|.....      ....+++..+.               +..     .
T Consensus        17 ~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (212)
T cd03274          17 EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPL   91 (212)
T ss_pred             CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHH
Confidence            347888887     8999999999999999999872100      00011111100               000     0


Q ss_pred             h-----hHHH-H----HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------------CCCHHHHHHH
Q 044538           84 L-----TMEE-A----VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------------HLDTQSIVAV  137 (158)
Q Consensus        84 ~-----~~~~-~----~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l  137 (158)
                      +     ...+ .    ..++++.+++++..+ +++..||+|||||++||+++..                ++|+.+...+
T Consensus        92 l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~-~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l  170 (212)
T cd03274          92 LKSKGIDLDHNRFLILQGEVEQIAQMPKKSW-KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIV  170 (212)
T ss_pred             HHHCCcCCCCCceEEcCCcEEEeeccccccc-cchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHH
Confidence            0     0000 0    134446667765444 4568999999999999987631                5899999999


Q ss_pred             HHHHhhcC--CeEEEEeecCC
Q 044538          138 AVTLDEFA--GGVVLVSHDSR  156 (158)
Q Consensus       138 ~~~l~~~~--~tvi~vtHd~~  156 (158)
                      .+.++++.  .++|++||+.+
T Consensus       171 ~~~l~~~~~~~~~iivs~~~~  191 (212)
T cd03274         171 ANYIKERTKNAQFIVISLRNN  191 (212)
T ss_pred             HHHHHHHcCCCEEEEEECcHH
Confidence            99998874  58999999853

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.74  E-value=4.5e-18  Score=136.54  Aligned_cols=131  Identities=24%  Similarity=0.321  Sum_probs=88.2

Q ss_pred             eEEcCCCCCcceeeeeE-EeeCCCEEEEECCCCCCcchHHHHHHhhhhcceee---------------------------
Q 044538           22 SFSYPNLQDIRLSNVDM-GIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRI---------------------------   73 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl-~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~---------------------------   73 (158)
                      ..+|+.+.   ++=..+ ...+|+++||+||||-||||.+++++|...+++.-                           
T Consensus        81 vHRYg~Ng---FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~  157 (591)
T COG1245          81 VHRYGVNG---FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY  157 (591)
T ss_pred             eeeccCCc---eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence            66676432   222222 24789999999999999999999999754433210                           


Q ss_pred             ------eccccchh-----------hHhhH---HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538           74 ------GRHSRHLE-----------DLLTM---EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        74 ------~~~~~~~~-----------~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                            ...+|+..           +.+..   .-...++.+.+++..... +.+++|||||.||++||++++.      
T Consensus       158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~-r~v~~LSGGELQr~aIaa~l~rdADvY~  236 (591)
T COG1245         158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLD-RDVSELSGGELQRVAIAAALLRDADVYF  236 (591)
T ss_pred             cCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhh-hhhhhcCchHHHHHHHHHHHhccCCEEE
Confidence                  00011100           00000   023556788889987655 6789999999999999888765      


Q ss_pred             ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                            .||...+....+.++++   +.+||+|.||+.
T Consensus       237 FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa  274 (591)
T COG1245         237 FDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA  274 (591)
T ss_pred             EcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH
Confidence                  48888777766666665   468999999974

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.74  E-value=8e-18  Score=124.85  Aligned_cols=119  Identities=20%  Similarity=0.169  Sum_probs=69.1

Q ss_pred             eeEEeeCCCEEEEECCCCCCcchHHHHHH----hhhhc-c----------------eeeeccccch-h------hHhhHH
Q 044538           36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLA----VRRRQ-K----------------LRIGRHSRHL-E------DLLTME   87 (158)
Q Consensus        36 isl~i~~G~~~~liG~nGsGKSTLl~~i~----~~~~~-~----------------~~~~~~~~~~-~------~~~~~~   87 (158)
                      .++++.+| +++|+||||||||||+++|.    +.... .                ..++..++.. .      ..++..
T Consensus        16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~   94 (204)
T cd03240          16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL   94 (204)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence            45667777 99999999999999999985    22111 0                0111111111 0      001111


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCChHHHHH------HHHHHHHhh------------CCCHHHHH-HHHHHHhhc----
Q 044538           88 EAVHAKLRKFGLPGHNHLTPIANLSGGQKVR------VMFTLVSMY------------HLDTQSIV-AVAVTLDEF----  144 (158)
Q Consensus        88 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr------v~ia~~~l~------------~lD~~~~~-~l~~~l~~~----  144 (158)
                      +.+... ..-...... ++++.+||+||+||      +++|+++..            +||+.... .+.+.+++.    
T Consensus        95 ~~~~~~-~~~~~~~~~-~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~  172 (204)
T cd03240          95 ENVIFC-HQGESNWPL-LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK  172 (204)
T ss_pred             hceeee-chHHHHHHH-hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcc
Confidence            111000 000000011 24568999999997      455555443            69999988 888888664    


Q ss_pred             CCeEEEEeecCCC
Q 044538          145 AGGVVLVSHDSRL  157 (158)
Q Consensus       145 ~~tvi~vtHd~~~  157 (158)
                      +.++|++|||+++
T Consensus       173 ~~~iiiitH~~~~  185 (204)
T cd03240         173 NFQLIVITHDEEL  185 (204)
T ss_pred             CCEEEEEEecHHH
Confidence            4589999999753

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.74  E-value=1.2e-17  Score=145.82  Aligned_cols=68  Identities=22%  Similarity=0.256  Sum_probs=54.3

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEEE
Q 044538           90 VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVLV  151 (158)
Q Consensus        90 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~v  151 (158)
                      ..++++.+|+......+++.+|||||+||++||++++.               +||+.....+++.++++   +.|||++
T Consensus       808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi  887 (924)
T TIGR00630       808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI  887 (924)
T ss_pred             HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            34567788887533346779999999999999988763               59999999888888765   5799999


Q ss_pred             eecCCC
Q 044538          152 SHDSRL  157 (158)
Q Consensus       152 tHd~~~  157 (158)
                      |||+++
T Consensus       888 ~H~~~~  893 (924)
T TIGR00630       888 EHNLDV  893 (924)
T ss_pred             eCCHHH
Confidence            999764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=2.2e-18  Score=138.27  Aligned_cols=137  Identities=23%  Similarity=0.395  Sum_probs=103.0

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---hcceeeeccccc-------------------
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---RQKLRIGRHSRH-------------------   79 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---~~~~~~~~~~~~-------------------   79 (158)
                      .|..+...+..+.+-|+.|--|..|+|+||||-|||||++.|+.+.   .+++.+-+..+.                   
T Consensus       269 nF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kR  348 (807)
T KOG0066|consen  269 NFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKR  348 (807)
T ss_pred             eeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHH
Confidence            4444444445789999999999999999999999999999997432   111111000000                   


Q ss_pred             ---------------------------hhhHh------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           80 ---------------------------LEDLL------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        80 ---------------------------~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                                                 ..+.+      ..+.+++++|.-+|++.....+|...+|||-|-||++|||+.
T Consensus       349 l~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALf  428 (807)
T KOG0066|consen  349 LALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALF  428 (807)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHh
Confidence                                       00000      113567788889999887777888999999999999999875


Q ss_pred             h------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI  158 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~~  158 (158)
                      .            +||.....|+-+.|+.|..|++|||||..|+
T Consensus       429 lEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFL  472 (807)
T KOG0066|consen  429 LEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFL  472 (807)
T ss_pred             cCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchH
Confidence            4            7999999999999999999999999998763

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.73  E-value=1.6e-17  Score=126.79  Aligned_cols=69  Identities=19%  Similarity=0.258  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCCCC-------------------CCCCCCCCCChHHHHHHHHHHHHh----h------------CCCHH
Q 044538           88 EAVHAKLRKFGLPGH-------------------NHLTPIANLSGGQKVRVMFTLVSM----Y------------HLDTQ  132 (158)
Q Consensus        88 ~~~~~~l~~~~l~~~-------------------~~~~~~~~LSgGqkqrv~ia~~~l----~------------~lD~~  132 (158)
                      +++.++++.+++...                   ..+.++.+||+|||||++||+++.    .            +||+.
T Consensus       125 ~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~  204 (251)
T cd03273         125 QRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLS  204 (251)
T ss_pred             HHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHH
Confidence            567788999998621                   112456899999999999998764    1            58999


Q ss_pred             HHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          133 SIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       133 ~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                      ....+.+.++++  +.++|+|||+.+
T Consensus       205 ~~~~~~~~l~~~~~g~~ii~iSH~~~  230 (251)
T cd03273         205 HTQNIGRMIKTHFKGSQFIVVSLKEG  230 (251)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEECCHH
Confidence            999999988775  468999999854

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.73  E-value=1.6e-17  Score=132.28  Aligned_cols=127  Identities=24%  Similarity=0.292  Sum_probs=90.4

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeeecc-----------------ccchhhHhh--------
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRH-----------------SRHLEDLLT--------   85 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~-----------------~~~~~~~~~--------   85 (158)
                      .+++|+||++++|++++|+|+|||||||+++++.+.......-.|.                 +....+.+.        
T Consensus       397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl  476 (593)
T COG2401         397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHL  476 (593)
T ss_pred             eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHH
Confidence            5799999999999999999999999999999999754322110110                 100000000        


Q ss_pred             -----HHHHHHHHHHHcCCCCC-CCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHh----h
Q 044538           86 -----MEEAVHAKLRKFGLPGH-NHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLD----E  143 (158)
Q Consensus        86 -----~~~~~~~~l~~~~l~~~-~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~----~  143 (158)
                           ....+.++++..|+.+. ..+++.++||-|||.|+.||+++..            +||+.+...+...+.    +
T Consensus       477 ~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe  556 (593)
T COG2401         477 RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE  556 (593)
T ss_pred             hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence                 01235678889998753 3345678999999999999866442            799988877776664    4


Q ss_pred             cCCeEEEEeecCCC
Q 044538          144 FAGGVVLVSHDSRL  157 (158)
Q Consensus       144 ~~~tvi~vtHd~~~  157 (158)
                      .+.|++++||+.++
T Consensus       557 ~giTlivvThrpEv  570 (593)
T COG2401         557 AGITLIVVTHRPEV  570 (593)
T ss_pred             hCCeEEEEecCHHH
Confidence            56799999998764

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.72  E-value=5.9e-17  Score=141.86  Aligned_cols=67  Identities=24%  Similarity=0.271  Sum_probs=53.5

Q ss_pred             HHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEEEe
Q 044538           91 HAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVLVS  152 (158)
Q Consensus        91 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~vt  152 (158)
                      .+.++.+|+......+++.+|||||+||+.||++++.               +||+.....+++.++++   +.|||+||
T Consensus       811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiit  890 (943)
T PRK00349        811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIE  890 (943)
T ss_pred             HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            4567788987533346778999999999999988764               48999998888888665   57999999


Q ss_pred             ecCCC
Q 044538          153 HDSRL  157 (158)
Q Consensus       153 Hd~~~  157 (158)
                      ||+++
T Consensus       891 H~~~~  895 (943)
T PRK00349        891 HNLDV  895 (943)
T ss_pred             cCHHH
Confidence            99764

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.71  E-value=3.8e-17  Score=124.42  Aligned_cols=69  Identities=22%  Similarity=0.296  Sum_probs=52.3

Q ss_pred             HHHHHHHHHcCCCCCC---------------------CCCCCCCCChHHHHHHHHHHHHhh----------------CCC
Q 044538           88 EAVHAKLRKFGLPGHN---------------------HLTPIANLSGGQKVRVMFTLVSMY----------------HLD  130 (158)
Q Consensus        88 ~~~~~~l~~~~l~~~~---------------------~~~~~~~LSgGqkqrv~ia~~~l~----------------~lD  130 (158)
                      +.+.+.++.+|+....                     ...++.+||+|||||++||++++.                +||
T Consensus       112 ~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD  191 (247)
T cd03275         112 KEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALD  191 (247)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCC
Confidence            4556788888885321                     112347999999999999987741                689


Q ss_pred             HHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          131 TQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       131 ~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      +.....+.+.++++   +.++|+||||.+
T Consensus       192 ~~~~~~l~~~i~~~~~~g~~vi~isH~~~  220 (247)
T cd03275         192 NTNVGKVASYIREQAGPNFQFIVISLKEE  220 (247)
T ss_pred             HHHHHHHHHHHHHhccCCcEEEEEECCHH
Confidence            99999888888776   468999999964

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.70  E-value=9.5e-17  Score=146.46  Aligned_cols=66  Identities=26%  Similarity=0.368  Sum_probs=53.3

Q ss_pred             HHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh---h------------CCCHHHHHHHHHHHhhc---CCeEEEEee
Q 044538           92 AKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM---Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSH  153 (158)
Q Consensus        92 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l---~------------~lD~~~~~~l~~~l~~~---~~tvi~vtH  153 (158)
                      ++++.+|+......+++.+|||||+||++||++++   .            +||+.....+++.++++   +.|||+|||
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH  870 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH  870 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            46788899764234677999999999999998886   1            69999999888888654   579999999


Q ss_pred             cCCC
Q 044538          154 DSRL  157 (158)
Q Consensus       154 d~~~  157 (158)
                      |+++
T Consensus       871 dl~~  874 (1809)
T PRK00635        871 NMHV  874 (1809)
T ss_pred             CHHH
Confidence            9864

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.69  E-value=1.5e-16  Score=129.77  Aligned_cols=133  Identities=17%  Similarity=0.160  Sum_probs=86.8

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccchh-----------
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHLE-----------   81 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~~-----------   81 (158)
                      .+--+.++ .++..++|+|++|--+.|+||||||||+|+|++.+.++-         ...+-|.+|.+.           
T Consensus       488 pvItP~~~-vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQII  566 (728)
T KOG0064|consen  488 PVITPAGD-VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQII  566 (728)
T ss_pred             ceeccCcc-eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceee
Confidence            44445544 367899999999999999999999999999999975431         111222222110           


Q ss_pred             -----hHhh----HHHHHHHHHHHcCCC---------CCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538           82 -----DLLT----MEEAVHAKLRKFGLP---------GHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT  131 (158)
Q Consensus        82 -----~~~~----~~~~~~~~l~~~~l~---------~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~  131 (158)
                           +.+.    .++.....|..+.++         +...++. ..||||||||+++||....            ...+
T Consensus       567 YPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWk-d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsi  645 (728)
T KOG0064|consen  567 YPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWK-DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSI  645 (728)
T ss_pred             cCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHH-hhccchHHHHHHHHHHHhcCcchhhhhhhhccccc
Confidence                 0110    012333344333322         1122333 6899999999999876543            2334


Q ss_pred             HHHHHHHHHHhhcCCeEEEEeecCC
Q 044538          132 QSIVAVAVTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       132 ~~~~~l~~~l~~~~~tvi~vtHd~~  156 (158)
                      .....+.+..++.+.+.|-|||...
T Consensus       646 dvE~~i~~~ak~~gi~llsithrps  670 (728)
T KOG0064|consen  646 DVEGKIFQAAKDAGISLLSITHRPS  670 (728)
T ss_pred             chHHHHHHHHHhcCceEEEeecCcc
Confidence            5567888999999999999999865

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.65  E-value=2.1e-16  Score=116.40  Aligned_cols=131  Identities=16%  Similarity=0.246  Sum_probs=94.2

Q ss_pred             CCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeee----------------------------ccc
Q 044538           26 PNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG----------------------------RHS   77 (158)
Q Consensus        26 ~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~----------------------------~~~   77 (158)
                      +.+...+++++|+++.+||+-|++|+||||||-..++|++..++++.+-                            ..+
T Consensus        16 sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIF   95 (330)
T COG4170          16 SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIF   95 (330)
T ss_pred             CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhh
Confidence            4555568999999999999999999999999999999986544332211                            111


Q ss_pred             cchhh---------------------------Hhh-HHHHHHHHHHHcCCCCCCC--CCCCCCCChHHHHHHHHHHHHhh
Q 044538           78 RHLED---------------------------LLT-MEEAVHAKLRKFGLPGHNH--LTPIANLSGGQKVRVMFTLVSMY  127 (158)
Q Consensus        78 ~~~~~---------------------------~~~-~~~~~~~~l~~~~l~~~~~--~~~~~~LSgGqkqrv~ia~~~l~  127 (158)
                      |....                           .+. ...++.+++.++|+.+..+  ..++.+|-.||-|+|.||.|+..
T Consensus        96 QeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~An  175 (330)
T COG4170          96 QEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALAN  175 (330)
T ss_pred             cCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhcc
Confidence            11000                           000 0255678899999976432  23457999999999999877654


Q ss_pred             ------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538          128 ------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR  156 (158)
Q Consensus       128 ------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~  156 (158)
                                  .+|+....+++++|...    +.||+++|||+.
T Consensus       176 qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~  220 (330)
T COG4170         176 QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ  220 (330)
T ss_pred             CCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH
Confidence                        47888888888887654    368999999974

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.65  E-value=1.7e-16  Score=117.36  Aligned_cols=119  Identities=16%  Similarity=0.104  Sum_probs=73.1

Q ss_pred             eeeeeEEeeCCC-EEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 044538           33 LSNVDMGIDMGT-CVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIAN  110 (158)
Q Consensus        33 l~~isl~i~~G~-~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  110 (158)
                      +.++||++.+|+ +++|+||||||||||++++....- -...| +.+..  .... ...+.+.+..++..+... ...++
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~-~~~~G~~vp~~--~~~~-~~~~~~~~~~lg~~~~l~-~~~s~   91 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTL-MAQSGLPIPAA--EGSS-LPVFENIFADIGDEQSIE-QSLST   91 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHH-HHHcCCCcccc--cccc-CcCccEEEEecCchhhhh-cCcch
Confidence            558999999995 799999999999999999872110 00011 00000  0000 000111222334433333 35689


Q ss_pred             CChHHHHHHHHHHHHhh-----------CCCHHHHHHHH----HHHhhcCCeEEEEeecCC
Q 044538          111 LSGGQKVRVMFTLVSMY-----------HLDTQSIVAVA----VTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       111 LSgGqkqrv~ia~~~l~-----------~lD~~~~~~l~----~~l~~~~~tvi~vtHd~~  156 (158)
                      +|+||+|++.+++++..           ++|+.....+.    +.+.+.+.++|++||+.+
T Consensus        92 fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~  152 (200)
T cd03280          92 FSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGE  152 (200)
T ss_pred             HHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHH
Confidence            99999999999765321           68988876664    333444679999999843

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.59  E-value=1.3e-15  Score=112.99  Aligned_cols=121  Identities=13%  Similarity=0.109  Sum_probs=78.3

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeeecc-ccchhhHhhHHHHHHHHHHHcCCCCCCCCCCC
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRH-SRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPI  108 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  108 (158)
                      ..+.+|++|++.+|++++|+||||+||||+++++++...-. .+|.. +.. ...+.   ..+.++..++..+... +..
T Consensus        16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la-~~G~~vpa~-~~~l~---~~d~I~~~~~~~d~~~-~~~   89 (204)
T cd03282          16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMA-QIGCFVPAE-YATLP---IFNRLLSRLSNDDSME-RNL   89 (204)
T ss_pred             cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHH-HcCCCcchh-hcCcc---ChhheeEecCCccccc-hhh
Confidence            35789999999999999999999999999999997543211 12221 111 11111   1233455566654333 456


Q ss_pred             CCCChHHHHHHHHHHHHhh------------CCCHHHH----HHHHHHHhhcCCeEEEEeecCCC
Q 044538          109 ANLSGGQKVRVMFTLVSMY------------HLDTQSI----VAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       109 ~~LSgGqkqrv~ia~~~l~------------~lD~~~~----~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      +.+|+|++|+..+. +.+.            ++|+...    ..+++.+.+.+.++|++||+.++
T Consensus        90 S~fs~e~~~~~~il-~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l  153 (204)
T cd03282          90 STFASEMSETAYIL-DYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDI  153 (204)
T ss_pred             hHHHHHHHHHHHHH-HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence            89999999876553 3322            4555442    34555555667899999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.59  E-value=7.5e-15  Score=109.62  Aligned_cols=124  Identities=18%  Similarity=0.130  Sum_probs=71.4

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------------eeee---------ccccc---hhhHh---
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------LRIG---------RHSRH---LEDLL---   84 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------~~~~---------~~~~~---~~~~~---   84 (158)
                      ++++.+++.+| +.+|+||||||||||+..|.......             +..|         .....   ..+..   
T Consensus        14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~   92 (213)
T cd03277          14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF   92 (213)
T ss_pred             cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence            45667777664 77999999999999999886321100             0000         00000   00000   


Q ss_pred             hHHHH--------HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh----------------hCCCHHHHHHHHHH
Q 044538           85 TMEEA--------VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM----------------YHLDTQSIVAVAVT  140 (158)
Q Consensus        85 ~~~~~--------~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l----------------~~lD~~~~~~l~~~  140 (158)
                      .....        ..+.+..+.-........+.+||+|||||+.+|+++.                .++|+.....+.+.
T Consensus        93 ~~q~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~  172 (213)
T cd03277          93 LPQDRVGEFAKLSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDM  172 (213)
T ss_pred             EchHHHHHHHhCChHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHH
Confidence            00000        1123333322111123456899999999988764422                16999999988888


Q ss_pred             Hhhc----C-CeEEEEeecCCC
Q 044538          141 LDEF----A-GGVVLVSHDSRL  157 (158)
Q Consensus       141 l~~~----~-~tvi~vtHd~~~  157 (158)
                      +.+.    + .++|++|||+..
T Consensus       173 l~~~~~~~g~~~viiith~~~~  194 (213)
T cd03277         173 LVETACKEGTSQYFLITPKLLP  194 (213)
T ss_pred             HHHHhhcCCCceEEEEchhhcc
Confidence            8554    2 379999998643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.59  E-value=5.3e-15  Score=107.56  Aligned_cols=118  Identities=21%  Similarity=0.263  Sum_probs=67.7

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccch---hhHhhH---HHHHHHH--HHHcCCCCCCCC
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHL---EDLLTM---EEAVHAK--LRKFGLPGHNHL  105 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~---~~~~~~---~~~~~~~--l~~~~l~~~~~~  105 (158)
                      +..+...++.+.+|+||||||||+++..|......+ .+.... ...   .+....   ...++-.  ...+-+.. .+.
T Consensus        14 ~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~-~~~   91 (178)
T cd03239          14 DETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRG-SLLFLAGGGVKAGINSASVEITFDKSYFLVLQ-GKV   91 (178)
T ss_pred             CCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCc-chhhhcccccCCCCceEEEEEEEECceEEecC-CcC
Confidence            444555444599999999999999999987422111 000000 000   000000   0000000  00111111 122


Q ss_pred             CCCCCCChHHHHHHHHHHHHh----h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          106 TPIANLSGGQKVRVMFTLVSM----Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       106 ~~~~~LSgGqkqrv~ia~~~l----~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      .++  ||+||+||++||+++.    .            ++|+.....+.+.+.+.   +.++|++||+.+
T Consensus        92 ~~~--LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~  159 (178)
T cd03239          92 EQI--LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE  159 (178)
T ss_pred             ccc--CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            343  9999999999998764    1            58999998888888664   368999999965

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.53  E-value=1.8e-14  Score=103.23  Aligned_cols=110  Identities=23%  Similarity=0.261  Sum_probs=68.1

Q ss_pred             eeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---eeeeccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 044538           34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIAN  110 (158)
Q Consensus        34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  110 (158)
                      ...++.+.++.++.|+|||||||||+++.+.......   .......+.... .. ...+.       +   .  ....+
T Consensus        12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~-~~-~~~~~-------~---i--~~~~~   77 (162)
T cd03227          12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCI-VA-AVSAE-------L---I--FTRLQ   77 (162)
T ss_pred             eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCc-ce-eeEEE-------E---e--hheee
Confidence            4556667777899999999999999999986422111   000000000000 00 00000       0   0  11246


Q ss_pred             CChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          111 LSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       111 LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ||+||+||+.+|+++..                ++|+.....+.+.+.++   +.++|++||+.++
T Consensus        78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~  143 (162)
T cd03227          78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPEL  143 (162)
T ss_pred             ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence            99999999999887742                58888888777776554   4699999999753

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.53  E-value=1.1e-13  Score=117.62  Aligned_cols=68  Identities=24%  Similarity=0.268  Sum_probs=49.4

Q ss_pred             HHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHh---hcCCeEEEEe
Q 044538           91 HAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLD---EFAGGVVLVS  152 (158)
Q Consensus        91 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~---~~~~tvi~vt  152 (158)
                      .+.|..+||.....-++..+|||||.|||-+|.-+..               +|...-...+++.|.   +.+.|||+|.
T Consensus       803 LqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIE  882 (935)
T COG0178         803 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE  882 (935)
T ss_pred             HHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            3456778887654446888999999999999865542               455555665555554   4567999999


Q ss_pred             ecCCCC
Q 044538          153 HDSRLI  158 (158)
Q Consensus       153 Hd~~~~  158 (158)
                      |+++.+
T Consensus       883 HNLdVI  888 (935)
T COG0178         883 HNLDVI  888 (935)
T ss_pred             cccceE
Confidence            999864

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.53  E-value=5.8e-15  Score=130.45  Aligned_cols=129  Identities=22%  Similarity=0.208  Sum_probs=93.3

Q ss_pred             CCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-------------------cceeeeccccchh--hHhh
Q 044538           27 NLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-------------------QKLRIGRHSRHLE--DLLT   85 (158)
Q Consensus        27 ~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-------------------~~~~~~~~~~~~~--~~~~   85 (158)
                      ++++.+|+||+=-+.||..+||+|+||||||||+++|+++..                   -+...||..|...  +.++
T Consensus       801 G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T  880 (1391)
T KOG0065|consen  801 GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT  880 (1391)
T ss_pred             ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence            345678999999999999999999999999999999996521                   0123454433210  1111


Q ss_pred             ---------------------HHHHHHHHHHHcCCCCCCCCCCCC----CCChHHHHHHHHHHHHh-------------h
Q 044538           86 ---------------------MEEAVHAKLRKFGLPGHNHLTPIA----NLSGGQKVRVMFTLVSM-------------Y  127 (158)
Q Consensus        86 ---------------------~~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqkqrv~ia~~~l-------------~  127 (158)
                                           ..+.++++++.+++++..+ .-++    -||.+||+|+.||--+.             .
T Consensus       881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~d-aiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTS  959 (1391)
T KOG0065|consen  881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYAD-ALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTS  959 (1391)
T ss_pred             hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhh-hhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCC
Confidence                                 1255788889999976443 3334    49999999999963222             2


Q ss_pred             CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          128 HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       128 ~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      +||.++...+++.+++.   +.|||++=|++.
T Consensus       960 GLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS  991 (1391)
T KOG0065|consen  960 GLDSQAAAIVMRFLRKLADTGQTILCTIHQPS  991 (1391)
T ss_pred             CccHHHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence            79999998888888775   579999999864

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.53  E-value=7.9e-15  Score=108.50  Aligned_cols=119  Identities=16%  Similarity=0.133  Sum_probs=69.0

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANL  111 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  111 (158)
                      +-..++++.+|++++|+||||||||||+++++...... ..| +.+.... ....   ....+..++..+... ...+.+
T Consensus        19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~-~~g~~~~~~~~-~i~~---~dqi~~~~~~~d~i~-~~~s~~   92 (202)
T cd03243          19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA-QIGCFVPAESA-SIPL---VDRIFTRIGAEDSIS-DGRSTF   92 (202)
T ss_pred             eEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH-HcCCCcccccc-ccCC---cCEEEEEecCccccc-CCceeH
Confidence            34667888899999999999999999999998432100 011 1110000 0000   111222333333222 345788


Q ss_pred             ChHHHHHHHHHHHHh-----------hCCCHHHHHHH----HHHHhhcCCeEEEEeecCCC
Q 044538          112 SGGQKVRVMFTLVSM-----------YHLDTQSIVAV----AVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       112 SgGqkqrv~ia~~~l-----------~~lD~~~~~~l----~~~l~~~~~tvi~vtHd~~~  157 (158)
                      |.+++|...++..+.           .++|+.....+    ++.+.+.+.++|++||+.++
T Consensus        93 ~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~  153 (202)
T cd03243          93 MAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHEL  153 (202)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHH
Confidence            888888666643221           16888766544    34444456799999999754

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.52  E-value=2.3e-14  Score=107.63  Aligned_cols=116  Identities=16%  Similarity=0.098  Sum_probs=77.1

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCC
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIA  109 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  109 (158)
                      .+.+|++++..++++++|+||||+||||++++++...-- ...| +.+.....    ...+.+++..+++.+..    ..
T Consensus        18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-a~~g~~vpa~~~~----~~~~~~il~~~~l~d~~----~~   88 (222)
T cd03285          18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLM-AQIGCFVPCDSAD----IPIVDCILARVGASDSQ----LK   88 (222)
T ss_pred             eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHH-HHhCCCcCcccEE----EeccceeEeeeccccch----hc
Confidence            468999999999999999999999999999998732110 0112 11111000    01233456677776432    46


Q ss_pred             CCChHHHHHHHHHHHH--hh---------------CCCHHHHHHHH-HHHhh-cCCeEEEEeecC
Q 044538          110 NLSGGQKVRVMFTLVS--MY---------------HLDTQSIVAVA-VTLDE-FAGGVVLVSHDS  155 (158)
Q Consensus       110 ~LSgGqkqrv~ia~~~--l~---------------~lD~~~~~~l~-~~l~~-~~~tvi~vtHd~  155 (158)
                      .+|.|++|++.+++++  +.               .+|.....+.. +.+.+ .+.++|++||+.
T Consensus        89 ~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~  153 (222)
T cd03285          89 GVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFH  153 (222)
T ss_pred             CcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechH
Confidence            7999999999997665  22               36776665443 55554 467999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.50  E-value=7.3e-14  Score=127.94  Aligned_cols=67  Identities=24%  Similarity=0.249  Sum_probs=53.0

Q ss_pred             HHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhh---cCCeEEEEe
Q 044538           91 HAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDE---FAGGVVLVS  152 (158)
Q Consensus        91 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~---~~~tvi~vt  152 (158)
                      .+.|..+||.....-++..+|||||.||+-||.-+..               +|++.....+++.+++   .+.|||+|+
T Consensus      1680 L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivie 1759 (1809)
T PRK00635       1680 LQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYID 1759 (1809)
T ss_pred             HHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4567888998766667889999999999999866542               5788888888777554   468999999


Q ss_pred             ecCCC
Q 044538          153 HDSRL  157 (158)
Q Consensus       153 Hd~~~  157 (158)
                      ||+++
T Consensus      1760 H~~~~ 1764 (1809)
T PRK00635       1760 HDPAL 1764 (1809)
T ss_pred             CCHHH
Confidence            99864

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.49  E-value=2.8e-13  Score=104.75  Aligned_cols=48  Identities=25%  Similarity=0.362  Sum_probs=39.3

Q ss_pred             CCCChHHHHHHHHHHHHh----------------hCCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          109 ANLSGGQKVRVMFTLVSM----------------YHLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       109 ~~LSgGqkqrv~ia~~~l----------------~~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                      ..|||||+||+++|++++                .+||+.....+.+.+.+.  +.++|++|||++
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~  234 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQ  234 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHH
Confidence            359999999999986532                169999999999988776  368999999964

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.42  E-value=7.3e-13  Score=108.69  Aligned_cols=126  Identities=18%  Similarity=0.275  Sum_probs=92.3

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccc-----------
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRH-----------   79 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~-----------   79 (158)
                      .++|+||++.+||++||.|--|||+|-|++.|.+....                     +..+++.+.+           
T Consensus       274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s  353 (500)
T COG1129         274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS  353 (500)
T ss_pred             ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence            47899999999999999999999999999999863210                     0012222111           


Q ss_pred             -----------------hhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538           80 -----------------LEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLD  130 (158)
Q Consensus        80 -----------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD  130 (158)
                                       +.+.-...+.+.++.+.+++.......++.+||||-||||.||+.+..            +.|
T Consensus       354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID  433 (500)
T COG1129         354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID  433 (500)
T ss_pred             HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence                             000011224567788888886655557889999999999999987764            688


Q ss_pred             HHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          131 TQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       131 ~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      .-+..++.++++++   +.+||++|-++.+
T Consensus       434 VGAK~eIy~li~~lA~~G~ail~iSSElpE  463 (500)
T COG1129         434 VGAKAEIYRLIRELAAEGKAILMISSELPE  463 (500)
T ss_pred             cchHHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            88888888887765   5799999988764

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.42  E-value=1.8e-12  Score=96.83  Aligned_cols=61  Identities=26%  Similarity=0.402  Sum_probs=42.6

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhcC--CeEE
Q 044538           88 EAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEFA--GGVV  149 (158)
Q Consensus        88 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~~--~tvi  149 (158)
                      ..+...+..+.+..       ..||||||.+++||-.+..                +||...+..+.+.|.+..  .-+|
T Consensus       121 ~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~i  193 (220)
T PF02463_consen  121 KDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFI  193 (220)
T ss_dssp             HHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEE
T ss_pred             cccccccccccccc-------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44555566555533       3899999999999744321                699999999999999886  5799


Q ss_pred             EEeecC
Q 044538          150 LVSHDS  155 (158)
Q Consensus       150 ~vtHd~  155 (158)
                      ++||+.
T Consensus       194 i~Th~~  199 (220)
T PF02463_consen  194 ITTHNP  199 (220)
T ss_dssp             EE-S-H
T ss_pred             cccccc
Confidence            999985

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.38  E-value=4e-12  Score=103.22  Aligned_cols=144  Identities=19%  Similarity=0.266  Sum_probs=102.5

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce-----------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL-----------------   71 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~-----------------   71 (158)
                      .+.+++.++ +..-..+ ...+++|||++.+||++||.|-.|-|.+-|+.+|++..+.   ++                 
T Consensus       255 ~~vL~V~~L-~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r  332 (501)
T COG3845         255 EVVLEVEDL-SVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR  332 (501)
T ss_pred             CeEEEEeee-EeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence            456666555 5544332 3579999999999999999999999999999999975421   00                 


Q ss_pred             --eeeccccch-----------h-------------------hHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHH
Q 044538           72 --RIGRHSRHL-----------E-------------------DLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRV  119 (158)
Q Consensus        72 --~~~~~~~~~-----------~-------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv  119 (158)
                        .+++.+.+.           .                   +.....+.+.++++.|++.......++..||||.+||+
T Consensus       333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~  412 (501)
T COG3845         333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKL  412 (501)
T ss_pred             hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehh
Confidence              112221110           0                   00112355677889999875444457889999999999


Q ss_pred             HHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          120 MFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       120 ~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      -+||-+..            +||..+.+.+.+.+.+.   +.+|+++|-|+++
T Consensus       413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDE  465 (501)
T COG3845         413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDE  465 (501)
T ss_pred             hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHH
Confidence            99887653            79999999888877543   5789999999875

>TIGR01069 mutS2 MutS2 family protein

Probab=99.33  E-value=1.5e-12  Score=112.86  Aligned_cols=117  Identities=16%  Similarity=0.146  Sum_probs=70.7

Q ss_pred             eeeEEeeCC-CEEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 044538           35 NVDMGIDMG-TCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLS  112 (158)
Q Consensus        35 ~isl~i~~G-~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  112 (158)
                      ++|+++.++ ++++|+||||+|||||++++++..... ..| +.+......+..   .......++...... ...+++|
T Consensus       313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a-q~G~~Vpa~~~~~~~~---~d~i~~~i~~~~si~-~~LStfS  387 (771)
T TIGR01069       313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF-QSGIPIPANEHSEIPY---FEEIFADIGDEQSIE-QNLSTFS  387 (771)
T ss_pred             eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH-HhCCCccCCccccccc---hhheeeecChHhHHh-hhhhHHH
Confidence            579999887 899999999999999999998652110 011 111100000000   011111222222122 2458899


Q ss_pred             hHHHHHHHHHHHHh-----------hCCCHHHHHHHH----HHHhhcCCeEEEEeecCC
Q 044538          113 GGQKVRVMFTLVSM-----------YHLDTQSIVAVA----VTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       113 gGqkqrv~ia~~~l-----------~~lD~~~~~~l~----~~l~~~~~tvi~vtHd~~  156 (158)
                      +|+++++.|+..+.           .++|+.....+.    +.+.+.+.++|++||+.+
T Consensus       388 ~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e  446 (771)
T TIGR01069       388 GHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE  446 (771)
T ss_pred             HHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence            99999999876531           268887776553    334445678999999864

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.32  E-value=4.4e-12  Score=93.79  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=28.5

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+++|++|+.  |++++|+||||||||||++++++.
T Consensus        15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~   48 (199)
T cd03283          15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVN   48 (199)
T ss_pred             eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHH
Confidence            4567666655  799999999999999999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.26  E-value=6.7e-12  Score=100.78  Aligned_cols=131  Identities=21%  Similarity=0.375  Sum_probs=82.3

Q ss_pred             EEcCCCCCcceeeeeEEeeCCC-----EEEEECCCCCCcchHHHHHHhhhhc-------ceeeeccccchhhHh--hH--
Q 044538           23 FSYPNLQDIRLSNVDMGIDMGT-----CVAIVGPNDTGKSPLPNLLAVRRRQ-------KLRIGRHSRHLEDLL--TM--   86 (158)
Q Consensus        23 ~~~~~~~~~~l~~isl~i~~G~-----~~~liG~nGsGKSTLl~~i~~~~~~-------~~~~~~~~~~~~~~~--~~--   86 (158)
                      +.|+...+ .+.+..+.|..|+     ++..+|+||.||||+++++++...+       .+.+++.+|...+-.  ++  
T Consensus       343 y~Yp~m~k-~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~  421 (592)
T KOG0063|consen  343 YSYPKMKK-TVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQ  421 (592)
T ss_pred             eccCccee-eeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHH
Confidence            55665543 4788999999886     5899999999999999999984321       223444443221100  00  


Q ss_pred             ------------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh------------hCCCHHHHHHHHHHHh
Q 044538           87 ------------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM------------YHLDTQSIVAVAVTLD  142 (158)
Q Consensus        87 ------------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l------------~~lD~~~~~~l~~~l~  142 (158)
                                  ..-+.+.++-+.++...+ +-+..|||||+|||++|..+=            ..||.+.+...-..++
T Consensus       422 ll~~kIr~ay~~pqF~~dvmkpL~ie~i~d-qevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Askvik  500 (592)
T KOG0063|consen  422 LLHTKIRDAYMHPQFVNDVMKPLQIENIID-QEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIK  500 (592)
T ss_pred             HHHHHhHhhhcCHHHHHhhhhhhhHHHHHh-HHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHH
Confidence                        122344555555554433 456899999999999964321            1477766554444444


Q ss_pred             h----cCCeEEEEeecC
Q 044538          143 E----FAGGVVLVSHDS  155 (158)
Q Consensus       143 ~----~~~tvi~vtHd~  155 (158)
                      +    .+.|-.+|.||.
T Consensus       501 RfilhakktafvVEhdf  517 (592)
T KOG0063|consen  501 RFILHAKKTAFVVEHDF  517 (592)
T ss_pred             HHHHhccchhhhhhhHH
Confidence            3    346778888874

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.25  E-value=6.4e-12  Score=83.79  Aligned_cols=34  Identities=26%  Similarity=0.229  Sum_probs=32.5

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++|++++|++++|++++|+||||||||||++++.
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            5799999999999999999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.23  E-value=1.7e-11  Score=91.75  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.+|++++..+ ++++|+|||||||||+++.+++
T Consensus        19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~   52 (216)
T cd03284          19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL   52 (216)
T ss_pred             eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence            467899999887 9999999999999999999975

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.22  E-value=3.4e-12  Score=93.27  Aligned_cols=106  Identities=17%  Similarity=0.107  Sum_probs=61.2

Q ss_pred             EEEEECCCCCCcchHHHHHHhhhhcceeeec-cccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVRRRQKLRIGR-HSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTL  123 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~  123 (158)
                      +++|+||||+||||+++.++...... ..|. .+..   ... -....+++..++..+... ...+++|+|++|...++.
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la-~~G~~v~a~---~~~-~~~~d~il~~~~~~d~~~-~~~s~fs~~~~~l~~~l~   74 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMA-QIGSFVPAE---SAE-LPVFDRIFTRIGASDSLA-QGLSTFMVEMKETANILK   74 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHH-HhCCCeeeh---heE-ecccceEEEEeCCCCchh-ccccHHHHHHHHHHHHHH
Confidence            36899999999999999987322100 1111 0000   000 011123345556555443 456899999998776654


Q ss_pred             HHh-----------hCCCHHHHHHH----HHHHhh-cCCeEEEEeecCC
Q 044538          124 VSM-----------YHLDTQSIVAV----AVTLDE-FAGGVVLVSHDSR  156 (158)
Q Consensus       124 ~~l-----------~~lD~~~~~~l----~~~l~~-~~~tvi~vtHd~~  156 (158)
                      .+.           .++|+.....+    ++.+.+ .+.++|++||+.+
T Consensus        75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~  123 (185)
T smart00534       75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE  123 (185)
T ss_pred             hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence            311           16888755444    333333 3678999999864

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.20  E-value=1.5e-10  Score=89.27  Aligned_cols=47  Identities=17%  Similarity=0.101  Sum_probs=36.7

Q ss_pred             CCCCChHHHHHHHHHHHHh---------------------hCCCHHHHHHHHHHHhhcCCeEEEEeecC
Q 044538          108 IANLSGGQKVRVMFTLVSM---------------------YHLDTQSIVAVAVTLDEFAGGVVLVSHDS  155 (158)
Q Consensus       108 ~~~LSgGqkqrv~ia~~~l---------------------~~lD~~~~~~l~~~l~~~~~tvi~vtHd~  155 (158)
                      ...+|+||+|++++|+++.                     .+||+.....+.+.+.+.+ .+++++|+.
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~  248 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDL  248 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCc
Confidence            3568999999999987753                     1699999999999998876 455555554

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.15  E-value=3.7e-11  Score=96.56  Aligned_cols=116  Identities=22%  Similarity=0.355  Sum_probs=75.6

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhhhccee-----------eecc----------------------ccchhhHh---
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLR-----------IGRH----------------------SRHLEDLL---   84 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~-----------~~~~----------------------~~~~~~~~---   84 (158)
                      .+|++.+++|.||-||||-++++++..+.++.           +++.                      +|+.....   
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~  177 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV  177 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence            68999999999999999999999976543321           0100                      01000000   


Q ss_pred             --h---------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHH
Q 044538           85 --T---------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL  141 (158)
Q Consensus        85 --~---------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l  141 (158)
                        .         ..+...+++..+.|..... +-+.+|||||.||.+||++.+.            .||...+......+
T Consensus       178 k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~-re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~I  256 (592)
T KOG0063|consen  178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLLD-REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI  256 (592)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHhhHHH-hhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHH
Confidence              0         0122345566666665443 5568999999999999877654            47777766555555


Q ss_pred             hhcC---CeEEEEeecCCC
Q 044538          142 DEFA---GGVVLVSHDSRL  157 (158)
Q Consensus       142 ~~~~---~tvi~vtHd~~~  157 (158)
                      +.+-   .=||+|.||+..
T Consensus       257 Rsl~~p~~YiIVVEHDLsV  275 (592)
T KOG0063|consen  257 RSLINPDRYIIVVEHDLSV  275 (592)
T ss_pred             HHhhCCCCeEEEEEeechH
Confidence            5542   459999999864

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.09  E-value=8.9e-11  Score=88.18  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=33.0

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.+|++|.+.+|++++|+||||+||||+++++++
T Consensus        19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~   53 (222)
T cd03287          19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL   53 (222)
T ss_pred             EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999986

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.08  E-value=5.6e-10  Score=83.37  Aligned_cols=31  Identities=35%  Similarity=0.502  Sum_probs=25.0

Q ss_pred             eeeEEeeCC--CEEEEECCCCCCcchHHHHHHh
Q 044538           35 NVDMGIDMG--TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        35 ~isl~i~~G--~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ..++.+.++  .+++|+||||+|||||++.+..
T Consensus        19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             cceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence            345555555  7899999999999999999873

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.03  E-value=1.6e-10  Score=100.55  Aligned_cols=117  Identities=16%  Similarity=0.168  Sum_probs=68.8

Q ss_pred             eeeEEeeC-CCEEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 044538           35 NVDMGIDM-GTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLS  112 (158)
Q Consensus        35 ~isl~i~~-G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  112 (158)
                      +.++.+.. +.++.|+|||++||||+++.++...--. ..| +.+......+.   ....++..+|-..... ...+++|
T Consensus       318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~ma-q~G~~vpa~~~~~i~---~~~~i~~~ig~~~si~-~~lStfS  392 (782)
T PRK00409        318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMA-KSGLPIPANEPSEIP---VFKEIFADIGDEQSIE-QSLSTFS  392 (782)
T ss_pred             CceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHH-HhCCCcccCCCcccc---ccceEEEecCCccchh-hchhHHH
Confidence            55666654 4679999999999999999886321100 111 11110000000   0111222334333332 3458999


Q ss_pred             hHHHHHHHHHHHHh-----------hCCCHHHHHHHH----HHHhhcCCeEEEEeecCC
Q 044538          113 GGQKVRVMFTLVSM-----------YHLDTQSIVAVA----VTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       113 gGqkqrv~ia~~~l-----------~~lD~~~~~~l~----~~l~~~~~tvi~vtHd~~  156 (158)
                      +||+|++.|++++-           .++|+.....+.    +.+.+.+.++|++||+.+
T Consensus       393 ~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e  451 (782)
T PRK00409        393 GHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE  451 (782)
T ss_pred             HHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH
Confidence            99999999976632           268887655553    344455679999999865

>PRK00064 recF recombination protein F; Reviewed

Probab=99.02  E-value=3.3e-09  Score=85.09  Aligned_cols=48  Identities=21%  Similarity=0.189  Sum_probs=40.3

Q ss_pred             CCCChHHHHHHHHHHHHhh---------------------CCCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538          109 ANLSGGQKVRVMFTLVSMY---------------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       109 ~~LSgGqkqrv~ia~~~l~---------------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~  156 (158)
                      ..+|.||+|++++|.++..                     +||+..+..+.+.+.+.+..++++||+.+
T Consensus       272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~  340 (361)
T PRK00064        272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLE  340 (361)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChh
Confidence            5899999999999865531                     69999999999999876668999999864

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.01  E-value=2.1e-09  Score=87.94  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=33.1

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++++ |.+.+|++++|+|+||+|||||+++|++..
T Consensus       147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~  182 (438)
T PRK07721        147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT  182 (438)
T ss_pred             hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            478999 999999999999999999999999998654

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.01  E-value=4.9e-10  Score=99.88  Aligned_cols=124  Identities=20%  Similarity=0.248  Sum_probs=84.6

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeeeccccch----------
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIGRHSRHL----------   80 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~~~~~~~----------   80 (158)
                      .+++|+|.-+++|+.+.++||.|||||||++.+++.....                    ....|..+..          
T Consensus       129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre  208 (1391)
T KOG0065|consen  129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE  208 (1391)
T ss_pred             eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence            5899999999999999999999999999999999642210                    1112211110          


Q ss_pred             --------------hhHhhHHH----HHHHHHHHcCCCCCCCC----CCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           81 --------------EDLLTMEE----AVHAKLRKFGLPGHNHL----TPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        81 --------------~~~~~~~~----~~~~~l~~~~l~~~~~~----~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                                    .+.....+    ..+.+++.+|++.-.+.    .-..-.|||||+||.+|-++..           
T Consensus       209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t  288 (1391)
T KOG0065|consen  209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT  288 (1391)
T ss_pred             hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence                          00111112    34578899999754331    1235799999999999744332           


Q ss_pred             -CCCHHHHHHHHHHHhhcC----CeEEEEeec
Q 044538          128 -HLDTQSIVAVAVTLDEFA----GGVVLVSHD  154 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~~~----~tvi~vtHd  154 (158)
                       +||..+.-++.+.+++..    .|.+++=++
T Consensus       289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q  320 (1391)
T KOG0065|consen  289 RGLDSSTAFQIIKALRQLAHITGATALVSILQ  320 (1391)
T ss_pred             ccccHHHHHHHHHHHHHHHhhhcceEEEEecc
Confidence             799999999999888763    466665554

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.96  E-value=2.9e-10  Score=93.04  Aligned_cols=31  Identities=16%  Similarity=0.240  Sum_probs=29.8

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHH
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPN   61 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~   61 (158)
                      .+|++||+++++||+++|+||||||||||++
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence            4689999999999999999999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.94  E-value=1.6e-09  Score=95.60  Aligned_cols=65  Identities=22%  Similarity=0.231  Sum_probs=52.6

Q ss_pred             HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhc---CCeEEEEeecC
Q 044538           93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDS  155 (158)
Q Consensus        93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~  155 (158)
                      .++.+|+.....++++.+|||||+|||+||+++..              +||+.....+++.|+++   +.|||+||||+
T Consensus       472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~  551 (943)
T PRK00349        472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE  551 (943)
T ss_pred             HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            57788887553457889999999999999988654              58899998888887654   57999999997


Q ss_pred             CC
Q 044538          156 RL  157 (158)
Q Consensus       156 ~~  157 (158)
                      ++
T Consensus       552 ~~  553 (943)
T PRK00349        552 DT  553 (943)
T ss_pred             HH
Confidence            64

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.92  E-value=2.9e-09  Score=93.88  Aligned_cols=65  Identities=23%  Similarity=0.244  Sum_probs=52.2

Q ss_pred             HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhc---CCeEEEEeecC
Q 044538           93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDS  155 (158)
Q Consensus        93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~  155 (158)
                      .+..+|+.....++++.+|||||+|||.||+++..              +||+.....+.+.|+++   +.|||+||||+
T Consensus       470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~  549 (924)
T TIGR00630       470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE  549 (924)
T ss_pred             hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            46778886543346789999999999999988753              68999998888888654   56999999997


Q ss_pred             CC
Q 044538          156 RL  157 (158)
Q Consensus       156 ~~  157 (158)
                      ++
T Consensus       550 ~~  551 (924)
T TIGR00630       550 ET  551 (924)
T ss_pred             HH
Confidence            64

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.90  E-value=1.9e-09  Score=64.87  Aligned_cols=33  Identities=30%  Similarity=0.539  Sum_probs=27.2

Q ss_pred             eeeeeEEeeC-CCEEEEECCCCCCcchHHHHHHh
Q 044538           33 LSNVDMGIDM-GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        33 l~~isl~i~~-G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++-++++.+ |+++.|.|||||||||+++++..
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3455777775 56999999999999999998864

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.82  E-value=3.8e-09  Score=79.18  Aligned_cols=35  Identities=29%  Similarity=0.455  Sum_probs=32.5

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+-+|++|+..+|++++|+||||+||||+++.++.
T Consensus        18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~   52 (218)
T cd03286          18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCL   52 (218)
T ss_pred             eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHH
Confidence            46789999999999999999999999999999874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.82  E-value=1e-09  Score=91.16  Aligned_cols=116  Identities=12%  Similarity=0.142  Sum_probs=63.7

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhh--hh--cce-eeeccccchhhHhh--------HHHH----------------
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR--RR--QKL-RIGRHSRHLEDLLT--------MEEA----------------   89 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~--~~--~~~-~~~~~~~~~~~~~~--------~~~~----------------   89 (158)
                      =+++|..+.|.||+|||||||..-++..  ..  .+. .+... ....+...        ..+.                
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~   95 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPE   95 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhc
Confidence            4789999999999999999998766432  22  221 11111 00000000        0000                


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH--HHHhhCCCH--HHHHHHH---HHHhhcCCeEEEEeecCC
Q 044538           90 VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT--LVSMYHLDT--QSIVAVA---VTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus        90 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia--~~~l~~lD~--~~~~~l~---~~l~~~~~tvi~vtHd~~  156 (158)
                      ....++.+++..... +....+|+|++|||.|+  .++...+|.  ..+..+.   +.+++.+.|+|++||+.+
T Consensus        96 ~~~~~~~~~l~~~l~-~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~TvLLtsh~~~  168 (484)
T TIGR02655        96 GQDVVGGFDLSALIE-RINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTTVMTTERIE  168 (484)
T ss_pred             cccccccCCHHHHHH-HHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            001112222222211 23468999999999997  344444443  2334444   445556789999999864

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.80  E-value=1.4e-08  Score=77.57  Aligned_cols=32  Identities=28%  Similarity=0.310  Sum_probs=28.1

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      |.=+.+.+|+.++|+||+|+|||||++.+...
T Consensus         8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~   39 (249)
T cd01128           8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANA   39 (249)
T ss_pred             eeecccCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            44568899999999999999999999998753

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.75  E-value=1.2e-07  Score=69.09  Aligned_cols=49  Identities=12%  Similarity=0.245  Sum_probs=35.0

Q ss_pred             CCCCChHHHHHHHHHHHHhh-----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          108 IANLSGGQKVRVMFTLVSMY-----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       108 ~~~LSgGqkqrv~ia~~~l~-----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      .+..|.||-=--.+.++.-.           .|.+..+..++..|+++   +.-+||+||.+-
T Consensus       127 Lh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi  189 (233)
T COG3910         127 LHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI  189 (233)
T ss_pred             hhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence            46789999765555555432           46788888888887765   456999999853

>PRK13695 putative NTPase; Provisional

Probab=98.74  E-value=8.3e-09  Score=74.49  Aligned_cols=110  Identities=15%  Similarity=0.156  Sum_probs=58.8

Q ss_pred             EEEEECCCCCCcchHHHHHHhhhhc-cee-eeccccchhhHh--------hHHHHHHHHHHHcCC-CCCCCCCCCCCCCh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVRRRQ-KLR-IGRHSRHLEDLL--------TMEEAVHAKLRKFGL-PGHNHLTPIANLSG  113 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~~~~-~~~-~~~~~~~~~~~~--------~~~~~~~~~l~~~~l-~~~~~~~~~~~LSg  113 (158)
                      .++|+|+||||||||++.+...... ... .++..+......        .........+...+. ......++...+||
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lsg   81 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLED   81 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehHH
Confidence            4789999999999999988654321 111 222221110000        000001112223332 11111223457999


Q ss_pred             HHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhcCCeEEEEeecC
Q 044538          114 GQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEFAGGVVLVSHDS  155 (158)
Q Consensus       114 Gqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~  155 (158)
                      +++-+..++...+.              .+|......+.+.+ +.+.++|+++|+.
T Consensus        82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~  136 (174)
T PRK13695         82 LERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR  136 (174)
T ss_pred             HHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch
Confidence            99999988665542              12333344444555 5678999999984

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.69  E-value=2.4e-07  Score=70.02  Aligned_cols=28  Identities=39%  Similarity=0.444  Sum_probs=24.1

Q ss_pred             EeeCCCEEEEECCCCCCcchH-HHHHHhh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPL-PNLLAVR   66 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTL-l~~i~~~   66 (158)
                      -+++|+++.|.|||||||||| ++++...
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~   48 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGF   48 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            489999999999999999999 5666654

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.68  E-value=1.2e-07  Score=77.89  Aligned_cols=36  Identities=19%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++++ |.+.+|++++|+|+||+|||||+++|++..
T Consensus       152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~  187 (440)
T TIGR01026       152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT  187 (440)
T ss_pred             eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            478888 999999999999999999999999998654

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.62  E-value=1e-07  Score=77.86  Aligned_cols=37  Identities=19%  Similarity=0.321  Sum_probs=33.9

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      .+++++ |++.+|++++|+|+||||||||+++|++...
T Consensus       144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~  180 (434)
T PRK07196        144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ  180 (434)
T ss_pred             eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence            479999 9999999999999999999999999987543

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.59  E-value=1.8e-07  Score=76.38  Aligned_cols=100  Identities=14%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcce-eeeccccchhhHhhHHHHHHHHHHHcCCC
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKL-RIGRHSRHLEDLLTMEEAVHAKLRKFGLP  100 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  100 (158)
                      +..|..+. .+++. .|.+.+|+.++|+|+||+|||||++++++...... .+....+.   .....+.++..+..-++.
T Consensus       137 ~~~l~TGi-raID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer---g~ev~e~~~~~l~~~gl~  211 (432)
T PRK06793        137 TDVFETGI-KSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER---GREVKDFIRKELGEEGMR  211 (432)
T ss_pred             hhccCCCC-EEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC---cccHHHHHHHHhhhcccc
Confidence            44454332 36766 59999999999999999999999999987553321 12221111   112223333344443433


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538          101 GHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus       101 ~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                      ....-...++-|.|+|+|++.+++.+
T Consensus       212 ~tvvv~~tsd~s~~~r~ra~~~a~~i  237 (432)
T PRK06793        212 KSVVVVATSDESHLMQLRAAKLATSI  237 (432)
T ss_pred             eeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            21111234789999999999976554

>TIGR00767 rho transcription termination factor Rho

Probab=98.57  E-value=9.9e-08  Score=77.04  Aligned_cols=50  Identities=28%  Similarity=0.373  Sum_probs=42.9

Q ss_pred             hhhheeeeEEcCCCCCccee-----------eeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           15 LQLIEVISFSYPNLQDIRLS-----------NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~-----------~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +.+.++ ++.|++.. .+|+           |+++.+.+|+.++|+||+|||||||++.+...
T Consensus       131 i~Fe~L-Tf~YP~er-~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~  191 (415)
T TIGR00767       131 VLFENL-TPLYPNER-LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQA  191 (415)
T ss_pred             eEEEEe-eecCCCcc-ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHh
Confidence            456666 99998754 5786           99999999999999999999999999998753

Members of this family differ in the specificity of RNA binding.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.52  E-value=6.3e-07  Score=69.25  Aligned_cols=25  Identities=28%  Similarity=0.259  Sum_probs=22.2

Q ss_pred             CEEEEECCCCCCcchHHHHHHhhhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      ..++|+||||||||||++.+++...
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccC
Confidence            5689999999999999999997654

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.52  E-value=1e-06  Score=63.79  Aligned_cols=20  Identities=20%  Similarity=0.270  Sum_probs=16.5

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.|.||+|+|||||.--++.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~   21 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLY   21 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            67899999999999765543

A related protein is found in archaea.

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=98.51  E-value=8.8e-08  Score=69.70  Aligned_cols=31  Identities=26%  Similarity=0.544  Sum_probs=26.3

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++++++++.+| +++|+||||+||||++.+|.
T Consensus        10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~   40 (202)
T PF13476_consen   10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIR   40 (202)
T ss_dssp             EEEEEEE--SE-EEEEEESTTSSHHHHHHHHH
T ss_pred             CcceEEEcCCC-cEEEECCCCCCHHHHHHHHH
Confidence            57888999776 99999999999999999886

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.49  E-value=1.1e-06  Score=72.92  Aligned_cols=36  Identities=33%  Similarity=0.472  Sum_probs=30.7

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ++++.++.+.+|.+++++||||+||||++..|+...
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~  280 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARC  280 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHH
Confidence            355677778899999999999999999999988643

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.46  E-value=5.8e-08  Score=70.95  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=30.2

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+-+.+.+.+|+.++|+||||||||||++.+++..
T Consensus        15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34467789999999999999999999999998643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.45  E-value=1.2e-07  Score=69.27  Aligned_cols=25  Identities=32%  Similarity=0.583  Sum_probs=22.7

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      |++++|+||||||||||+++|+...
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC
Confidence            7899999999999999999998643

>TIGR00235 udk uridine kinase

Probab=98.44  E-value=1.1e-07  Score=70.58  Aligned_cols=27  Identities=19%  Similarity=0.302  Sum_probs=24.5

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ++|++++|+||||||||||++.|++..
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l   30 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQL   30 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999999998653

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.41  E-value=9.4e-07  Score=69.91  Aligned_cols=45  Identities=18%  Similarity=0.238  Sum_probs=37.1

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      ...|..+ ..+++++ |.+.+|++++|+|+||+|||||+++|++...
T Consensus        50 ~~~l~tG-i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~   94 (326)
T cd01136          50 DEVLPTG-VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT   94 (326)
T ss_pred             eeEcCCC-cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC
Confidence            4445443 3478999 9999999999999999999999999986543

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.41  E-value=2e-07  Score=67.71  Aligned_cols=26  Identities=23%  Similarity=0.326  Sum_probs=23.7

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +|++++|+|+|||||||+++.+++..
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l   27 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALF   27 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            69999999999999999999998643

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.40  E-value=7.2e-06  Score=61.84  Aligned_cols=113  Identities=12%  Similarity=0.121  Sum_probs=61.3

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhhh-hcceeeeccccchhhHhhHHHHHHHHHHHcCCCCCCC------------C
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVRR-RQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNH------------L  105 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------------~  105 (158)
                      =+++|.++.|.|++|||||||...++... .......+....  +  +. +.+.+.++.+|++....            .
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e--~--~~-~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~   95 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE--N--TS-KSYLKQMESVKIDISDFFLWGYLRIFPLNT   95 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC--C--CH-HHHHHHHHHCCCChhHHHhCCCceEEeccc
Confidence            47899999999999999999988875332 111111111111  0  11 11222234444321100            0


Q ss_pred             CCCCCCChHHHHHHHHHHHHhh-----------------CCCHHHHHHHHHHH---hhcCCeEEEEeecCC
Q 044538          106 TPIANLSGGQKVRVMFTLVSMY-----------------HLDTQSIVAVAVTL---DEFAGGVVLVSHDSR  156 (158)
Q Consensus       106 ~~~~~LSgGqkqrv~ia~~~l~-----------------~lD~~~~~~l~~~l---~~~~~tvi~vtHd~~  156 (158)
                      ......|.++.+.+..+...+.                 ..|......+++.+   .+.+.|+++++|+..
T Consensus        96 ~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~  166 (234)
T PRK06067         96 EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYA  166 (234)
T ss_pred             cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            1123456788888877655442                 23444444554444   444679999999754

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.37  E-value=4.6e-07  Score=74.26  Aligned_cols=50  Identities=18%  Similarity=0.142  Sum_probs=39.9

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +...++ +..|..+. .+++.++ .+.+|++++|+||||||||||++++++..
T Consensus       140 ~~r~~v-~~~l~TGi-~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~  189 (450)
T PRK06002        140 MTRARV-ETGLRTGV-RVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD  189 (450)
T ss_pred             eEeecc-eEEcCCCc-EEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            444444 77776543 4788885 99999999999999999999999998654

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=98.36  E-value=1.5e-06  Score=71.06  Aligned_cols=35  Identities=14%  Similarity=0.311  Sum_probs=31.3

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +++.+ |.+.+|++++|+|+||+|||||++++++..
T Consensus       152 aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~  186 (444)
T PRK08972        152 AINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGT  186 (444)
T ss_pred             eecce-EEEcCCCEEEEECCCCCChhHHHHHhccCC
Confidence            56666 999999999999999999999999998643

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.34  E-value=3.4e-07  Score=67.53  Aligned_cols=27  Identities=33%  Similarity=0.517  Sum_probs=24.7

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ++|++++|+||||||||||++.++...
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            589999999999999999999998654

>PRK08149 ATP synthase SpaL; Validated

Probab=98.34  E-value=4.9e-07  Score=73.83  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=33.2

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++++ +++.+|++++|+|+||+|||||+++|+...
T Consensus       140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~  175 (428)
T PRK08149        140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHS  175 (428)
T ss_pred             EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCC
Confidence            479999 999999999999999999999999998644

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.30  E-value=4.5e-07  Score=65.46  Aligned_cols=24  Identities=38%  Similarity=0.562  Sum_probs=22.0

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      |++++|+||||||||||++.|+..
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHcc
Confidence            789999999999999999999853

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.27  E-value=5.7e-07  Score=64.99  Aligned_cols=24  Identities=33%  Similarity=0.631  Sum_probs=21.8

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      |++++|+|||||||||+.+.|+..
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK05922 type III secretion system ATPase; Validated

Probab=98.27  E-value=3.9e-06  Score=68.70  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=31.2

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +++.+ +.+.+|+.++|+|+||+|||||+++|++..
T Consensus       147 ~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~  181 (434)
T PRK05922        147 AIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGS  181 (434)
T ss_pred             eecce-EEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence            56655 999999999999999999999999998654

>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]

Probab=98.24  E-value=7.6e-07  Score=70.30  Aligned_cols=32  Identities=28%  Similarity=0.530  Sum_probs=29.5

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +.++.+++.+++.+.|+|||||||||+++++.
T Consensus        14 f~~lditf~e~~ttIivgpNGsGKTtvLdair   45 (440)
T COG3950          14 FLNLDITFGESETTIIVGPNGSGKTTVLDAIR   45 (440)
T ss_pred             hhhceeecCCCceEEEECCCCCChhhHHHHHH
Confidence            56889999999999999999999999998874

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.24  E-value=1.2e-05  Score=56.21  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCcchHHHHHHhhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ++.|.||||+||||++..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            36899999999999999887654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.22  E-value=2.9e-06  Score=69.27  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=32.0

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      ++ |.+|.+.+|++++|+|+||+|||||+++|++...
T Consensus       130 ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~  165 (418)
T TIGR03498       130 VI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD  165 (418)
T ss_pred             EE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCC
Confidence            45 5799999999999999999999999999986543

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.22  E-value=1.1e-06  Score=71.98  Aligned_cols=44  Identities=20%  Similarity=0.141  Sum_probs=36.3

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +..+..+ ..+++++ |.+.+|++++|+|+||+|||||++++++..
T Consensus       136 ~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~  179 (433)
T PRK07594        136 TQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAP  179 (433)
T ss_pred             hheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCC
Confidence            4444433 3479999 999999999999999999999999998644

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.21  E-value=9.1e-07  Score=72.16  Aligned_cols=27  Identities=37%  Similarity=0.645  Sum_probs=24.5

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +.+|++++++||||+||||++..|++.
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999988864

>PLN03210 Resistant to P

Probab=98.21  E-value=8.4e-07  Score=80.68  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=27.6

Q ss_pred             eeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        36 isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++++..++++++|+|++|+|||||++.+...
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~  230 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSR  230 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHH
Confidence            4677889999999999999999999999754

syringae 6; Provisional

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=98.21  E-value=1.2e-06  Score=71.94  Aligned_cols=36  Identities=14%  Similarity=0.267  Sum_probs=33.0

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++++ |.+.+|++++|+|+||+|||||++++++..
T Consensus       157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~  192 (451)
T PRK05688        157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFT  192 (451)
T ss_pred             eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899 999999999999999999999999998654

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.21  E-value=3.6e-06  Score=71.02  Aligned_cols=51  Identities=27%  Similarity=0.395  Sum_probs=41.7

Q ss_pred             CCCCCChHHHHHHHHHHHHh----------h-------------CCCHHHHHHHHHHHhhcC-CeEEEEeecCCC
Q 044538          107 PIANLSGGQKVRVMFTLVSM----------Y-------------HLDTQSIVAVAVTLDEFA-GGVVLVSHDSRL  157 (158)
Q Consensus       107 ~~~~LSgGqkqrv~ia~~~l----------~-------------~lD~~~~~~l~~~l~~~~-~tvi~vtHd~~~  157 (158)
                      ++..|||||+||++||++++          .             +||+.....+.+.+.+.. .+||+|||+.+.
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~  539 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHD  539 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhc
Confidence            55799999999999997654          1             388889999999888763 589999999653

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.19  E-value=5.4e-06  Score=67.61  Aligned_cols=45  Identities=16%  Similarity=0.165  Sum_probs=36.2

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      +..|..+ ..+++.+ |.+.+|++++|+|+||+|||||+++|+....
T Consensus       118 ~~~~~tG-i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~  162 (411)
T TIGR03496       118 DEPLDVG-VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE  162 (411)
T ss_pred             ceEeeee-EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4444433 2468878 9999999999999999999999999986543

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.18  E-value=9.6e-07  Score=76.47  Aligned_cols=35  Identities=34%  Similarity=0.505  Sum_probs=30.7

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++++.++.+++|++++++||||+||||++..|++.
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhh
Confidence            46678888889999999999999999999988854

>PRK06936 type III secretion system ATPase; Provisional

Probab=98.18  E-value=1.8e-06  Score=70.64  Aligned_cols=36  Identities=19%  Similarity=0.203  Sum_probs=33.0

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++++ |.+.+|++++|+|+||+|||||+++++...
T Consensus       151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~  186 (439)
T PRK06936        151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSA  186 (439)
T ss_pred             ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence            478999 999999999999999999999999998644

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.17  E-value=1.2e-06  Score=70.52  Aligned_cols=35  Identities=31%  Similarity=0.485  Sum_probs=31.1

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++++.++.+.+|++++++||||+||||++..|+..
T Consensus       126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            56778889999999999999999999999888754

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.16  E-value=7e-06  Score=67.01  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=32.9

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++++ |.+.+|++++|+|+||+|||||+++|+...
T Consensus       126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~  161 (413)
T TIGR03497       126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNA  161 (413)
T ss_pred             eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999 999999999999999999999999988644

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=98.15  E-value=1.5e-06  Score=71.16  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=32.4

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+++++ +++.+|++++|+|+||+|||||+++|+..
T Consensus       146 ~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~  180 (434)
T PRK08472        146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKG  180 (434)
T ss_pred             HHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            478999 99999999999999999999999999854

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.14  E-value=1.9e-06  Score=70.70  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=33.0

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++++ |.+.+|++++|+|+||+|||||++++++..
T Consensus       152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~  187 (441)
T PRK09099        152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGT  187 (441)
T ss_pred             eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999 999999999999999999999999998643

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.14  E-value=8.2e-06  Score=61.78  Aligned_cols=22  Identities=50%  Similarity=0.647  Sum_probs=19.3

Q ss_pred             CCEEEEECCCCCCcchHHHHHH
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      |.+..|+||.|+|||||.--++
T Consensus         1 g~~~ll~g~~G~GKS~lal~la   22 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLA   22 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHH
Confidence            6788999999999999977665

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.14  E-value=1.5e-06  Score=71.07  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++++ |.+.+|++++|+|+||+|||||++++++..
T Consensus       134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~  169 (422)
T TIGR02546       134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGA  169 (422)
T ss_pred             eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence            479999 999999999999999999999999998654

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.13  E-value=1.6e-06  Score=65.35  Aligned_cols=28  Identities=36%  Similarity=0.453  Sum_probs=23.7

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      -.+..+++|.||||||||||.+.++...
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l   57 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALL   57 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3456799999999999999999998643

>PLN02796 D-glycerate 3-kinase

Probab=98.13  E-value=5.2e-07  Score=71.65  Aligned_cols=37  Identities=19%  Similarity=0.159  Sum_probs=30.9

Q ss_pred             cceeeeeEEe---eCCCE-----EEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGI---DMGTC-----VAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i---~~G~~-----~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++++++.+   ++|+.     +||.|+||||||||++.|....
T Consensus        80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL  124 (347)
T PLN02796         80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLF  124 (347)
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHh
Confidence            3577888887   67776     9999999999999999998643

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.13  E-value=1.8e-06  Score=77.85  Aligned_cols=28  Identities=36%  Similarity=0.637  Sum_probs=22.8

Q ss_pred             eeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        36 isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++.|.+| +++|+|||||||||++.+|.
T Consensus        17 ~~i~f~~~-~~~i~G~NGsGKS~ll~ai~   44 (1179)
T TIGR02168        17 TTINFDKG-ITGIVGPNGCGKSNIVDAIR   44 (1179)
T ss_pred             eeEEecCC-cEEEECCCCCChhHHHHHHH
Confidence            35555554 99999999999999998764

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.13  E-value=1.7e-06  Score=64.15  Aligned_cols=27  Identities=15%  Similarity=0.261  Sum_probs=23.6

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .++.+++|.|+||||||||.+.|+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998643

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.12  E-value=5e-06  Score=73.52  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=27.3

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +=+|+++. ..+.++.|.|||.+||||++|.++.
T Consensus       597 vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l  629 (854)
T PRK05399        597 VPNDCDLD-EERRLLLITGPNMAGKSTYMRQVAL  629 (854)
T ss_pred             EecceeeC-CCCcEEEEECCCCCCcHHHHHHHHH
Confidence            44567776 6678999999999999999998864

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.11  E-value=1.4e-06  Score=65.40  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCcchHHHHHHhhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ++||.||||||||||.+.|....
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHH
Confidence            57999999999999999998643

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK15494 era GTPase Era; Provisional

Probab=98.10  E-value=2.4e-06  Score=68.07  Aligned_cols=49  Identities=20%  Similarity=0.310  Sum_probs=41.6

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCC-------EEEEECCCCCCcchHHHHHHh
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGT-------CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~-------~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ....++ +++|+. ...+++.+++++++|+       .++|+|..|+|||||++.+.+
T Consensus        19 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~   74 (339)
T PRK15494         19 TEALAA-AVREDA-STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIG   74 (339)
T ss_pred             cccccc-cccCCC-CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhC
Confidence            344555 788884 4568999999999999       999999999999999999875

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.08  E-value=2.7e-06  Score=69.82  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=32.1

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++++ |.+.+|++++|+|+||||||||+++|++..
T Consensus       153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~  188 (442)
T PRK06315        153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNA  188 (442)
T ss_pred             EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence            367777 999999999999999999999999998543

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.07  E-value=2.1e-06  Score=63.09  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCcchHHHHHHhhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +++|.||||||||||.+.|....
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47999999999999999998653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.06  E-value=3.2e-06  Score=76.22  Aligned_cols=31  Identities=26%  Similarity=0.509  Sum_probs=27.3

Q ss_pred             eeeEE---eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           35 NVDMG---IDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        35 ~isl~---i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .|+|+   +..+.+++|+|||||||||+++.|+.
T Consensus        19 ~idf~~~~l~~~~l~~I~G~tGaGKStildai~~   52 (1047)
T PRK10246         19 KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICL   52 (1047)
T ss_pred             eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            58888   45689999999999999999999983

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.06  E-value=1.3e-05  Score=69.46  Aligned_cols=63  Identities=24%  Similarity=0.279  Sum_probs=45.6

Q ss_pred             HHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHH---HhhcCCeEEEEeecCC
Q 044538           94 LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVT---LDEFAGGVVLVSHDSR  156 (158)
Q Consensus        94 l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~---l~~~~~tvi~vtHd~~  156 (158)
                      |-.+||+.....|...+|||||.||+-+|..+=+              +|.+.-...+++.   |++.+-|+|+|.||.+
T Consensus       465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed  544 (935)
T COG0178         465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED  544 (935)
T ss_pred             HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence            4457887766667788999999999999866432              3444444555554   5566789999999965

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.05  E-value=2.7e-06  Score=66.35  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .-.++||.||||||||||+++|...
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~l   85 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQAL   85 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999988754

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK06820 type III secretion system ATPase; Validated

Probab=98.05  E-value=4.3e-06  Score=68.59  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=32.8

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++.+ +++.+|+.++|+|+||+|||||+++|+...
T Consensus       152 ~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~  187 (440)
T PRK06820        152 RAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADS  187 (440)
T ss_pred             ceecce-EEecCCCEEEEECCCCCChHHHHHHHhccC
Confidence            478999 999999999999999999999999998543

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.05  E-value=2.2e-06  Score=67.24  Aligned_cols=35  Identities=26%  Similarity=0.227  Sum_probs=32.3

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+++++++...++.+++|+|++|||||||+..+..
T Consensus        22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM   56 (300)
T ss_pred             HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999999999999998874

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00611 recf recF protein

Probab=98.04  E-value=4.9e-06  Score=66.96  Aligned_cols=49  Identities=20%  Similarity=0.087  Sum_probs=41.1

Q ss_pred             CCCChHHHHHHHHHHHHhh---------------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          109 ANLSGGQKVRVMFTLVSMY---------------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       109 ~~LSgGqkqrv~ia~~~l~---------------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      ..+|.||++++++|.+++.                     +||+..+..+++.+.+.+..++++||+.+.
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~  343 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDH  343 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhh
Confidence            3799999999999866542                     599999999999997766789999998753

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=98.04  E-value=3.9e-06  Score=58.21  Aligned_cols=27  Identities=33%  Similarity=0.430  Sum_probs=24.4

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+++|++++|.|+.|||||||.+.++.
T Consensus        18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~   44 (133)
T TIGR00150        18 PLDFGTVVLLKGDLGAGKTTLVQGLLQ   44 (133)
T ss_pred             hCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            357899999999999999999999974

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR00634 recN DNA repair protein RecN

Probab=98.04  E-value=4.8e-06  Score=70.60  Aligned_cols=48  Identities=27%  Similarity=0.362  Sum_probs=40.0

Q ss_pred             CCCChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          109 ANLSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       109 ~~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                      ..|||||+||++||++++.                ++|+.....+.+.+++.  +.+||+|||++.
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~  504 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQ  504 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHH
Confidence            4789999999999977653                58899988888888765  478999999964

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.04  E-value=1.9e-06  Score=67.84  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=28.9

Q ss_pred             eeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        36 isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      +++.+..|+.++|+||+|||||||++.+++...
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~  169 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP  169 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            567788999999999999999999999986543

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd00879 Sar1 Sar1 subfamily

Probab=98.04  E-value=1.8e-06  Score=62.68  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=28.7

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|+++++..+++++ +|+|++|||||||++.+..
T Consensus         9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879           9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence            47788888877777 9999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK10869 recombination and repair protein; Provisional

Probab=98.04  E-value=5.7e-06  Score=69.97  Aligned_cols=47  Identities=19%  Similarity=0.297  Sum_probs=39.8

Q ss_pred             CCChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538          110 NLSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSR  156 (158)
Q Consensus       110 ~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~  156 (158)
                      .+||||+||++||++++.                ++|......+.+.+++..  .+||+|||++.
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~  494 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQ  494 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            589999999999987663                588999998888887764  68999999974

>PRK09183 transposase/IS protein; Provisional

Probab=98.03  E-value=2.8e-06  Score=65.28  Aligned_cols=34  Identities=24%  Similarity=0.483  Sum_probs=30.0

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .|.+++| +++|+.+.|+||+|+|||+|...++..
T Consensus        92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~  125 (259)
T PRK09183         92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYE  125 (259)
T ss_pred             HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            3667888 999999999999999999999998643

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.02  E-value=6.3e-06  Score=68.86  Aligned_cols=42  Identities=24%  Similarity=0.263  Sum_probs=34.7

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ...++..  ..++|+.+.+ +|.+++|.|||||||||+.+.++..
T Consensus       266 A~~~g~~--RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~  307 (512)
T PRK13477        266 AVRCGST--RLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKK  307 (512)
T ss_pred             EEEeCCe--EEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4445443  3689999988 8899999999999999999999843

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.02  E-value=3.4e-06  Score=56.83  Aligned_cols=22  Identities=45%  Similarity=0.664  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++|.|++||||||+.+.++..
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999853

...

>PRK02224 chromosome segregation protein; Provisional

Probab=98.00  E-value=4.4e-06  Score=74.03  Aligned_cols=30  Identities=30%  Similarity=0.460  Sum_probs=25.3

Q ss_pred             eeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+.+++|.+| +++|+|||||||||++..|.
T Consensus        15 ~~~~~~f~~g-~~~i~G~Ng~GKStil~ai~   44 (880)
T PRK02224         15 ADADLRLEDG-VTVIHGVNGSGKSSLLEACF   44 (880)
T ss_pred             cceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            3456777775 99999999999999999876

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.00  E-value=5e-06  Score=59.46  Aligned_cols=33  Identities=24%  Similarity=0.368  Sum_probs=25.3

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++.+-=.+ ++++++++|+||+|||||+|.|.+.
T Consensus        26 ~~~l~~~l-~~k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   26 IEELKELL-KGKTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             HHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHh-cCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34444333 3599999999999999999999753

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.00  E-value=4.6e-06  Score=68.45  Aligned_cols=36  Identities=17%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      +++ .-|++.+|++++|+|+||+|||||++++++...
T Consensus       165 aID-~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~  200 (455)
T PRK07960        165 AIN-ALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ  200 (455)
T ss_pred             eee-ecccccCCcEEEEECCCCCCccHHHHHHhCCCC
Confidence            444 449999999999999999999999999986543

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.00  E-value=4.4e-06  Score=74.41  Aligned_cols=30  Identities=30%  Similarity=0.529  Sum_probs=25.3

Q ss_pred             eeeEE-eeCCCEEEEECCCCCCcchHHHHHH
Q 044538           35 NVDMG-IDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        35 ~isl~-i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++|+ +....+++|+|||||||||++.+|+
T Consensus        16 ~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~   46 (908)
T COG0419          16 DIDIEKLFDSGIFLIVGPNGAGKSSILDAIT   46 (908)
T ss_pred             ccceeecCCCCeEEEECCCCCcHHHHHHHHH
Confidence            66666 4455699999999999999999997

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.99  E-value=5.3e-06  Score=55.94  Aligned_cols=27  Identities=37%  Similarity=0.552  Sum_probs=23.1

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      ++..+.|+||+|+||||+++.++....
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence            367899999999999999999986543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	6e-17
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	8e-16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-10
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	6e-07
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-06
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-04
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	7e-06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	7e-06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-04
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-05
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-05
2ghi_A	260	Transport protein; multidrug resistance protein, M	3e-05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	4e-05
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	6e-05
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-04
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	1e-04
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-04
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	2e-04
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	3e-04
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	9e-04

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 75.8 bits (186), Expect = 6e-17
 Identities = 37/186 (19%), Positives = 62/186 (33%), Gaps = 32/186 (17%)

Query: 2   KYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPN 61
                  +      + +    FS      I L+   + +       I GPN  GKS L  
Sbjct: 420 IPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMR 479

Query: 62  LLAVRRRQKLRIGRHSR--HL------------------EDLLTMEEAVHAKLRKFGLPG 101
            +A  +          R  ++                  E  +  +EA+  KL +FG   
Sbjct: 480 AIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD 539

Query: 102 HNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVV 149
                PI+ LSGG K+++      +             HLDT ++  +   L+      +
Sbjct: 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSI 599

Query: 150 LVSHDS 155
            +SHDS
Sbjct: 600 TISHDS 605

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 72.8 bits (178), Expect = 8e-16
 Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 29/180 (16%)

Query: 8   TESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67
            E+ +  +  I  I  +   +  I             C  ++G N   KS     +    
Sbjct: 782 NENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVD 841

Query: 68  RQKLRIGRHSRHLEDLL----------------TMEEAVHAKLRKFGLPG-HNHLTPIAN 110
              +  G        ++                   + +       GL       + I  
Sbjct: 842 NAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRG 901

Query: 111 LSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI 158
           LSGGQKV+++    +              +LD  S+ A++  L EF GGV++++H +   
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFT 961

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 55.4 bits (133), Expect = 7e-10
 Identities = 22/170 (12%), Positives = 51/170 (30%), Gaps = 28/170 (16%)

Query: 10  STSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA----- 64
           +    +  +  + F YP     ++++++    + + +A++GPN  GKS L N+L      
Sbjct: 666 TKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725

Query: 65  ----VRRRQKLRIGRHSRHLEDLLTM-------------------EEAVHAKLRKFGLPG 101
               V   +  RI    +H    +                      E +    R+     
Sbjct: 726 TSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINEND 785

Query: 102 HNHLTPIANLSGGQKVRVMFTLVSMYHLDTQSIVAVAVTLDEFAGGVVLV 151
              +  I  + G  +          +    +   +  +  +        V
Sbjct: 786 AEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWV 835

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 45/145 (31%)

Query: 14  MLQLIEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA------- 64
           M + + V  + F Y     +    ++  ++ G  +A++G N  GKS L +LL        
Sbjct: 1   MNKALSVENLGFYYQAENFL-FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59

Query: 65  --VRRRQKLRI-------------------GRHSRHL--------EDLLTMEEAVHAKLR 95
             +   Q +                     GR   H+         D     +     L 
Sbjct: 60  GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRS-THINTFAKPKSHD----YQVAMQALD 114

Query: 96  KFGLPGHNHLTPIANLSGGQKVRVM 120
              L  H       +LSGGQ+  ++
Sbjct: 115 YLNL-THLAKREFTSLSGGQRQLIL 138

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 44/201 (21%)

Query: 1   IKYFHEPTESTSPMLQLIEVISFSYPN----LQDIRLSNVDMGIDMGTCVAIVGPNDTGK 56
            + +       S  + +       YP         +L      I  G  + IVGPN  GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395

Query: 57  SPLPNLLA----------------VRRRQKLRI---GRHSRHLEDLLTMEEAVHAK---- 93
           +    +LA                  + Q ++    G     L  + + +   +      
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 455

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141
           L+  G+          +LSGG+  RV      +             +LD +  +AV+  +
Sbjct: 456 LKPLGIIDLYDRNV-EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 514

Query: 142 DEFA----GGVVLVSHDSRLI 158
                      ++V HD  +I
Sbjct: 515 RHLMEKNEKTALVVEHDVLMI 535

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 33/179 (18%), Positives = 53/179 (29%), Gaps = 59/179 (32%)

Query: 35  NVDMGIDMGTCVAIVGPNDTGKSPL---------PNLLAVRRR----------------- 68
                +  G  V IVGPN TGK+           PNL                       
Sbjct: 109 YRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYF 168

Query: 69  QKLRIGR------------HSRH----LEDLLTMEEAVHAKLRKFGLPGHNHLT--PIAN 110
           ++L+ G               +     + +LL   + V             ++    +  
Sbjct: 169 ERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQ 228

Query: 111 LSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFA---GGVVLVSHD 154
           LSGG+  RV      +             +LD +  + VA  +   A     V++V HD
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 43.2 bits (103), Expect = 7e-06
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 17 LIEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
          ++    + F+Y + + I L ++       + +A  GP+  GKS + +LL
Sbjct: 1  MLSARHVDFAYDDSEQI-LRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 21  ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
           I FSYP+ ++++ L  +++ +  G  VA+VG +  GKS    L+
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 21   ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
            + F+YP    I  L  + + +  G  +A+VG +  GKS +  LL
Sbjct: 1036 VVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
           ++F+YP  +   L N+++ I  G  VA+VG + +GKS + +L+
Sbjct: 347 VTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
           ++F+Y   +   LS+V   I  G  VA+VG + +GKS + NL 
Sbjct: 347 VTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF 389

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 21 ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
          ++FSYP   + R L +++  I  GT  A+VG   +GKS +  LL
Sbjct: 23 VNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 44/197 (22%)

Query: 5   HEPTESTSPMLQLIEVISFSYPNLQ----DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLP 60
               ++T  +       +FSYP+L+    D  L+  +        + ++G N TGK+ L 
Sbjct: 336 FRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLI 395

Query: 61  NLLA-------VRRRQKLRIGRHSRHL--------EDLLT---MEEAVHAK-----LRKF 97
            LLA        +   KL +    + +          L       + ++ +     ++  
Sbjct: 396 KLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL 455

Query: 98  GLPGHNHLTPIANLSGGQKVRVM--FTLVS----------MYHLDTQSIVAVAVTLDEFA 145
            +          +LSGG+  RV     L              +LD++  +  +  +  F 
Sbjct: 456 RIDDIIDQEV-QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514

Query: 146 GG----VVLVSHDSRLI 158
                   +V HD  + 
Sbjct: 515 LHNKKTAFIVEHDFIMA 531

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 40.5 bits (96), Expect = 6e-05
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
          I F Y     + L N+++ I  G  + IVG + +GKS L  L+
Sbjct: 13 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 42/172 (24%)

Query: 28  LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA-----------------VRRRQK 70
           L D +L   +     G  + I+GPN  GK+    +L                    + Q+
Sbjct: 279 LGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQR 338

Query: 71  LRI---GRHSRHLED-----LLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT 122
           +     G   ++LE+     L T         ++  L          +LSGG+  ++   
Sbjct: 339 IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNV-NDLSGGELQKLYIA 397

Query: 123 LVSMY------------HLDTQSIVAVAVTLDEFA---GGVVL-VSHDSRLI 158
                            +LD +    VA  +         V   + HD  + 
Sbjct: 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH 449

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 66/196 (33%)

Query: 21  ISFSY-PN-LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA-------------- 64
           +   Y  N  +   L          T + ++G N  GK+ +  +LA              
Sbjct: 5   VIHRYKVNGFKLFGLPT----PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV 60

Query: 65  --VRRRQKLR---------------------------IGRHSRHLE-DLLTMEEAVHAKL 94
                 ++ R                             +  +    ++LT  +    K 
Sbjct: 61  GKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKD 120

Query: 95  RKFGLPGHNHLT--PIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVT 140
               L    +L       LSGG   R++     +             +LD +  + +A  
Sbjct: 121 EVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKA 180

Query: 141 LDEFAGG--VVLVSHD 154
           + E      V++V HD
Sbjct: 181 IRELLKNKYVIVVDHD 196

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
           + FSY + ++  L +V   +  G  +A+VGP+  GKS +  LL
Sbjct: 59  VHFSYADGRET-LQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 21 ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
          +SF+YPN  +++ L  +   +  G   A+VGPN +GKS +  LL
Sbjct: 22 VSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
           +SF Y + +   L ++++ I+ G  VA VG +  GKS L NL+
Sbjct: 345 VSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI 387

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 18 IEV--ISFSYPN---LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
          IEV  +S  +     L+   L NV + I+ G C+ + G   +GKS L  ++
Sbjct: 3  IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIV 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.98
1g6h_A	257	High-affinity branched-chain amino acid transport	99.98
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.98
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.98
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.98
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.97
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.97
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.97
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.97
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.97
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.97
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.97
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.97
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.97
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.97
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.97
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.97
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.97
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.97
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.97
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.97
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.97
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.97
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.97
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.97
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.97
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.97
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.97
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.96
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.95
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.95
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.95
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.95
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.95
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.95
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.95
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.94
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.94
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.94
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.94
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.94
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.94
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.93
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.92
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.92
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.91
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.91
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.91
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.91
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.88
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.87
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.84
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.84
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.84
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.84
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.8
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.76
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.74
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.73
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.7
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.7
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.7
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.68
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.68
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.66
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.63
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.62
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.62
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.59
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.58
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.58
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.57
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.56
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.54
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.53
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.52
2og2_A	359	Putative signal recognition particle receptor; nuc	99.48
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.46
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.44
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.44
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.42
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.41
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.41
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.38
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.37
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.35
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.35
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.35
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.3
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.3
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.29
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.27
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.26
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.22
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.2
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.19
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.18
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.12
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.12
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.11
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.09
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.05
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.04
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.04
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.02
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.01
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.0
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.96
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.95
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.92
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.89
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.88
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.86
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.86
3kta_B	173	Chromosome segregation protein SMC; structural mai	98.84
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.82
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.82
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.82
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.8
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.8
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.79
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.77
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.74
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.7
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.69
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.69
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.64
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.64
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.61
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.6
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.58
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.58
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.57
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.56
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.55
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.53
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.53
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.52
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.51
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.48
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.45
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.44
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.44
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.43
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.43
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.43
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.42
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.41
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.41
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.41
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.4
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.4
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.4
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.39
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.38
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.38
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.38
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.36
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.36
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.35
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.31
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.3
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.29
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.28
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.28
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	98.27
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.26
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.26
3ice_A	422	Transcription termination factor RHO; transcriptio	98.25
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.23
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.18
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.16
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.16
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.13
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.11
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.1
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.09
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.09
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.08
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.08
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.08
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.05
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.04
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.03
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.02
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.01
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.99
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.98
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.96
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.93
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.91
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.91
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.9
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.9
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.89
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.87
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.86
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.86
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.86
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.84
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.84
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.83
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.83
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.82
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.81
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.81
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.79
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.78
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.78
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.77
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.77
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.73
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.72
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.71
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.7
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.7
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.7
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.69
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.69
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.68
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.67
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.66
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.66
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.64
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.63
1via_A	175	Shikimate kinase; structural genomics, transferase	97.63
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.63
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.63
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.62
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.62
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.6
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.6
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.6
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.59
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.59
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.58
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.58
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.58
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.57
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.54
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.52
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.52
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.49
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.48
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.48
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.46
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.46
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.46
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.46
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.45
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.44
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.41
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.4
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.39
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.38
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.37
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.37
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.37
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.36
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.36
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.36
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.36
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.36
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.35
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.35
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.34
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.34
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.34
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.33
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.32
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.32
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.31
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.31
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.29
3bos_A	242	Putative DNA replication factor; P-loop containing	97.29
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.29
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.27
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.26
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.26
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.23
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.21
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.21
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.21
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.21
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.2
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.2
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.19
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.15
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.15
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.14
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.12
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.11
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.1
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.1
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.1
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.09
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.09
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.09
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.08
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.07
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.07
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.07
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.07
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.07
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.06
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.06
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.06
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.05
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.05
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.05
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.05
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.04
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.04
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.03
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.03
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.03
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.02
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.01
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.01
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.0
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.0
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.0
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.99
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.99
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.99
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.98
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.98
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.98
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.98
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.98
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.98
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.97
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.95
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.94
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.94
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.93
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.93
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.93
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.92
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.92
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.92
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.92
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.92
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.91
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.91
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.91
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.91
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.9
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.9
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.9
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.89
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.89
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.89
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.88
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.88
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.87
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.86
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.86
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.86
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.86
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.85
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.85
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.85
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.84
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.84
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.84
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.84
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.84
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.84
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.83
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.83
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.82
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.81
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.8
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.8
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.79
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.79
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.79
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.79
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.78
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.78
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.78
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.78
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.78
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.77
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.76
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.75
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.75
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.75
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.75
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.74
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.74
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.74
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.73
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.73
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.73
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.72
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.72
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.72
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.72
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.71
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.71
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.7
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.7
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.7
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.69
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.68
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.68
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.68
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.68
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.68
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.67
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.66
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.65
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.65
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.65
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.64
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.64
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.63
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.63
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.63
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.62
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.62
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.58
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.58
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.57
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.57
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.56
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.55
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.54
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.54
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.52
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.52
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.52
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.51
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.51
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.49
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.48
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.47
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.46
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.46
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.46
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.44
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.43
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.43
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.42
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.42
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.42
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.4
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.4
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.39
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.38
2qgz_A	308	Helicase loader, putative primosome component; str	96.37
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.37
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.36
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.34
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.34
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.33
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.32
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.32
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.31
3pvs_A	447	Replication-associated recombination protein A; ma	96.31
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.29
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.25
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.21
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.2
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.17
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.15
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.14
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	96.13
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.12
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.11
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.11
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.1
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.09
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.09
3l0o_A	427	Transcription termination factor RHO; helicase, RH	96.02
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.99
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.99
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	95.95
3co5_A	143	Putative two-component system transcriptional RES	95.95
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.89
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.89
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.86

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=6.4e-34  Score=218.58  Aligned_cols=144  Identities=24%  Similarity=0.349  Sum_probs=110.7

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      .+++++.++ +++|++.. .+|+|+||+|++||+++|+||||||||||+++|++....                      
T Consensus         5 ~~~l~i~~l-s~~y~~~~-~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~   82 (275)
T 3gfo_A            5 DYILKVEEL-NYNYSDGT-HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKL   82 (275)
T ss_dssp             CEEEEEEEE-EEECTTSC-EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHH
T ss_pred             CcEEEEEEE-EEEECCCC-eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHH
Confidence            356777776 99997543 489999999999999999999999999999999863211                      


Q ss_pred             ceeeeccccchh---------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           70 KLRIGRHSRHLE---------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        70 ~~~~~~~~~~~~---------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                      +..+++.+|...         +.+            ...+++.++++.+++.+... +++.+|||||||||+||+|++. 
T Consensus        83 ~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~iAraL~~~  161 (275)
T 3gfo_A           83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-KPTHCLSFGQKKRVAIAGVLVME  161 (275)
T ss_dssp             HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHTTC
T ss_pred             hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CCcccCCHHHHHHHHHHHHHHcC
Confidence            112455554321         110            11346778999999987654 5679999999999999998875 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRLI  158 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~~  158 (158)
                                 +||+.++..+++.++++    +.|||+||||++++
T Consensus       162 P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~  207 (275)
T 3gfo_A          162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV  207 (275)
T ss_dssp             CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence                       69999999888887653    57999999999763

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=6.8e-34  Score=225.36  Aligned_cols=144  Identities=23%  Similarity=0.338  Sum_probs=110.5

Q ss_pred             chhhhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------
Q 044538           12 SPMLQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------   69 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------   69 (158)
                      .+|+++.++ +++|+.+  ...+|+||||+|++||+++|+||||||||||+++|++...+                    
T Consensus        22 ~~mi~v~~l-s~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~  100 (366)
T 3tui_C           22 KHMIKLSNI-TKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL  100 (366)
T ss_dssp             -CCEEEEEE-EEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred             CceEEEEeE-EEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence            457777776 9999643  23589999999999999999999999999999999964211                    


Q ss_pred             ---ceeeeccccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           70 ---KLRIGRHSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        70 ---~~~~~~~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                         +..+|+.+|.+  .      +..            ...+++.++++.+|+.+..+ +++.+|||||||||+||+|++
T Consensus       101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqkQRVaIArAL~  179 (366)
T 3tui_C          101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-SYPSNLSGGQKQRVAIARALA  179 (366)
T ss_dssp             HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-CCTTTSCHHHHHHHHHHHHTT
T ss_pred             HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHh
Confidence               11355555432  1      111            11356788999999987655 567999999999999999977


Q ss_pred             h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .            +||+.+...+++.++++    +.|||+||||+++
T Consensus       180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~  226 (366)
T 3tui_C          180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV  226 (366)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHH
T ss_pred             cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence            5            69999999998888654    6799999999754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=2.9e-33  Score=210.53  Aligned_cols=141  Identities=25%  Similarity=0.325  Sum_probs=105.9

Q ss_pred             hhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------
Q 044538           15 LQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------   69 (158)
Q Consensus        15 l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------   69 (158)
                      +++.++ +++|+...  ..+|+|+||+|++||+++|+||||||||||+++|++...+                       
T Consensus         2 l~~~~l-~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (235)
T 3tif_A            2 VKLKNV-TKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (235)
T ss_dssp             EEEEEE-EEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEE-EEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence            455555 88886432  3589999999999999999999999999999999863211                       


Q ss_pred             -ceeeeccccch--------hhHh---------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538           70 -KLRIGRHSRHL--------EDLL---------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS  125 (158)
Q Consensus        70 -~~~~~~~~~~~--------~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~  125 (158)
                       +..+++.+|..        .+..               ...+++.++++.+++.+...++++.+|||||||||+||+|+
T Consensus        81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral  160 (235)
T 3tif_A           81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL  160 (235)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence             01245544421        1110               11245677899999976443467799999999999999998


Q ss_pred             hh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538          126 MY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR  156 (158)
Q Consensus       126 l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~  156 (158)
                      +.            +||+.+...+++.++++    +.|||+||||++
T Consensus       161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~  207 (235)
T 3tif_A          161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN  207 (235)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            75            69999999999888654    679999999975

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=4.9e-33  Score=207.94  Aligned_cols=140  Identities=20%  Similarity=0.273  Sum_probs=107.0

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------   69 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------   69 (158)
                      +|+++.++ +++|+.  .++|+|+||+|++|++++|+||||||||||+++|++...+                       
T Consensus         3 ~~l~~~~l-~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   79 (224)
T 2pcj_A            3 EILRAENI-KKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL   79 (224)
T ss_dssp             EEEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHH
T ss_pred             cEEEEEeE-EEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHH
Confidence            36676666 999965  3589999999999999999999999999999999863210                       


Q ss_pred             -ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           70 -KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        70 -~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                       ...+++.+|..        .+.+            ...+++.++++.+++.+..+ +++.+|||||||||+||++++. 
T Consensus        80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~  158 (224)
T 2pcj_A           80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-RKPYELSGGEQQRVAIARALANE  158 (224)
T ss_dssp             HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHHHHHHHTTTC
T ss_pred             HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHcC
Confidence             01244444321        0110            11245678899999987655 5779999999999999998775 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                                 +||+.+...+.+.++++   +.|||+||||++
T Consensus       159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~  201 (224)
T 2pcj_A          159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE  201 (224)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence                       69999999998888654   579999999964

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=6.7e-33  Score=220.82  Aligned_cols=139  Identities=22%  Similarity=0.305  Sum_probs=107.3

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH   76 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~   76 (158)
                      +++.++ +++|+.  ..+|+|+||+|++||+++|+||||||||||+++|++....                  ...+++.
T Consensus         4 l~~~~l-~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V   80 (381)
T 3rlf_A            4 VQLQNV-TKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV   80 (381)
T ss_dssp             EEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred             EEEEeE-EEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence            555565 889964  3589999999999999999999999999999999974321                  1235555


Q ss_pred             ccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538           77 SRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------  127 (158)
Q Consensus        77 ~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------  127 (158)
                      +|..  .      +++            ...+++.++++.+++.+... +++.+|||||||||+||+|++.         
T Consensus        81 fQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE  159 (381)
T 3rlf_A           81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLDE  159 (381)
T ss_dssp             CTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-CCGGGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred             ecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhHCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            4431  1      111            11356788999999987655 5679999999999999999875         


Q ss_pred             ---CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ---HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                         +||+..+..+++.++++    +.|+|+||||+++
T Consensus       160 Pts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e  196 (381)
T 3rlf_A          160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE  196 (381)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence               79999988888777554    6899999999753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=5.3e-33  Score=219.99  Aligned_cols=140  Identities=24%  Similarity=0.270  Sum_probs=106.7

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------ce
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KL   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~   71 (158)
                      ++.+.++ +++|++  ..+|+|+||+|++||+++|+||||||||||+++|++....                      ..
T Consensus         4 ~l~i~~l-s~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r   80 (359)
T 3fvq_A            4 ALHIGHL-SKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER   80 (359)
T ss_dssp             CEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred             EEEEEeE-EEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence            5666666 999964  3589999999999999999999999999999999964211                      11


Q ss_pred             eeeccccch--hhHh------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           72 RIGRHSRHL--EDLL------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        72 ~~~~~~~~~--~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      .+++.+|..  .+.+                  ...+++.++++.+++.+..+ +++.+|||||||||+||+|++.    
T Consensus        81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~QRValArAL~~~P~l  159 (359)
T 3fvq_A           81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-RYPHELSGGQQQRAALARALAPDPEL  159 (359)
T ss_dssp             CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            244444431  1111                  12356788999999987655 5679999999999999999875    


Q ss_pred             --------CCCHHHHHHHHHHH----hhcCCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTL----DEFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l----~~~~~tvi~vtHd~~~  157 (158)
                              +||+..+..+++.+    ++.+.|+|+||||+++
T Consensus       160 LLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~e  201 (359)
T 3fvq_A          160 ILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREE  201 (359)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence                    79999988887654    3446899999999753

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.98  E-value=1.3e-32  Score=217.63  Aligned_cols=142  Identities=25%  Similarity=0.313  Sum_probs=109.2

Q ss_pred             chhhhhheeeeEEc-CCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------cee
Q 044538           12 SPMLQLIEVISFSY-PNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLR   72 (158)
Q Consensus        12 ~~~l~~~~~~~~~~-~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~   72 (158)
                      ++++++.++ +++| +.  ..+|+|+||+|++||+++|+||||||||||+++|++....                  +..
T Consensus        12 ~~~l~~~~l-~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~   88 (355)
T 1z47_A           12 SMTIEFVGV-EKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN   88 (355)
T ss_dssp             CEEEEEEEE-EECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred             CceEEEEEE-EEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence            457777776 9988 43  3589999999999999999999999999999999964321                  112


Q ss_pred             eeccccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           73 IGRHSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        73 ~~~~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      +++.+|..  .      +..            ...+++.++++.+++.+..+ +++.+|||||||||+||+|++.     
T Consensus        89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lL  167 (355)
T 1z47_A           89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-RFPHELSGGQQQRVALARALAPRPQVL  167 (355)
T ss_dssp             EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            45544431  1      111            01346778999999987655 5679999999999999999875     


Q ss_pred             -------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                             +||+..+..+++.++++    +.|+|+||||+++
T Consensus       168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~  208 (355)
T 1z47_A          168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE  208 (355)
T ss_dssp             EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence                   79999999888877653    6799999999753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.98  E-value=1.2e-32  Score=209.66  Aligned_cols=142  Identities=20%  Similarity=0.209  Sum_probs=108.5

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~   71 (158)
                      +|+++.++ +++|++  .++|+|+||+|++||+++|+||||||||||+++|++...+                     +.
T Consensus         6 ~~l~i~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (257)
T 1g6h_A            6 EILRTENI-VKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY   82 (257)
T ss_dssp             EEEEEEEE-EEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEeee-EEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence            46777776 999964  3589999999999999999999999999999999863210                     01


Q ss_pred             eeeccccch--h------h-------H---------------h---hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHH
Q 044538           72 RIGRHSRHL--E------D-------L---------------L---TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVR  118 (158)
Q Consensus        72 ~~~~~~~~~--~------~-------~---------------~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr  118 (158)
                      .+++.+|..  .      +       .               .   ...+++.++++.+++.+... +++.+||||||||
T Consensus        83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkQr  161 (257)
T 1g6h_A           83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-RKAGELSGGQMKL  161 (257)
T ss_dssp             TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHH
T ss_pred             CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC-CCchhCCHHHHHH
Confidence            244443321  0      0       0               0   01245778899999976554 5679999999999


Q ss_pred             HHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538          119 VMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI  158 (158)
Q Consensus       119 v~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~  158 (158)
                      |+||++++.            +||+.++..+++.++++   +.|||+||||++++
T Consensus       162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~  216 (257)
T 1g6h_A          162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV  216 (257)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred             HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence            999998775            79999999999888665   57999999998764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.98  E-value=1.3e-32  Score=210.44  Aligned_cols=141  Identities=23%  Similarity=0.264  Sum_probs=107.3

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR   72 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~   72 (158)
                      +++++.++ ++.|+.  .++|+|+||+|++||+++|+||||||||||+++|++....                    ...
T Consensus        10 ~~l~~~~l-~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   86 (266)
T 4g1u_C           10 ALLEASHL-HYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART   86 (266)
T ss_dssp             CEEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred             ceEEEEeE-EEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence            56777676 888864  3589999999999999999999999999999999864211                    001


Q ss_pred             eeccccch--------hhHh----------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538           73 IGRHSRHL--------EDLL----------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------  127 (158)
Q Consensus        73 ~~~~~~~~--------~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------  127 (158)
                      +++.++..        .+.+          ...+++.++++.+++.+..+ +++.+|||||||||+||++++.       
T Consensus        87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~QRv~iAraL~~~~~~~~~  165 (266)
T 4g1u_C           87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-RDYRVLSGGEQQRVQLARVLAQLWQPQPT  165 (266)
T ss_dssp             EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-SBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred             EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence            33333211        1111          12456788999999987655 5678999999999999999874       


Q ss_pred             -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                 +||+.++..+++.++++    +.|||+||||+++
T Consensus       166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~  210 (266)
T 4g1u_C          166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL  210 (266)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHH
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHH
Confidence                       49999999999888664    3599999999754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.98  E-value=1e-32  Score=210.65  Aligned_cols=140  Identities=23%  Similarity=0.342  Sum_probs=106.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------ce
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KL   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~   71 (158)
                      |+++.++ +++|++  ..+|+|+||+|++||+++|+||||||||||+++|++...+                      +.
T Consensus        24 ~l~i~~l-~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~  100 (263)
T 2olj_A           24 MIDVHQL-KKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE  100 (263)
T ss_dssp             SEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred             eEEEEeE-EEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence            5666666 888864  3589999999999999999999999999999999864211                      01


Q ss_pred             eeeccccch--------hhHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           72 RIGRHSRHL--------EDLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        72 ~~~~~~~~~--------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      .+++.+|..        .+.+             ...+++.++++.+++.+..+ +++.+|||||||||+||++++.   
T Consensus       101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~lAraL~~~p~  179 (263)
T 2olj_A          101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-AYPDSLSGGQAQRVAIARALAMEPK  179 (263)
T ss_dssp             HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHHHHHHHHHHCCCC
Confidence            244444321        0110             01245678899999976554 5779999999999999998775   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                               +||+.++..+++.++++   +.|||+||||+++
T Consensus       180 lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~  221 (263)
T 2olj_A          180 IMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF  221 (263)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence                     69999999999888664   5799999999753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.98  E-value=4.2e-32  Score=215.29  Aligned_cols=140  Identities=22%  Similarity=0.277  Sum_probs=107.0

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeec
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGR   75 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~   75 (158)
                      ++++.++ +++|+.  ..+|+|+||++++||+++|+||||||||||+++|++....                  ...+++
T Consensus         3 ~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~   79 (362)
T 2it1_A            3 EIKLENI-VKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL   79 (362)
T ss_dssp             CEEEEEE-EEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred             EEEEEeE-EEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE
Confidence            3555565 888964  3589999999999999999999999999999999964321                  112454


Q ss_pred             cccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538           76 HSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------  127 (158)
Q Consensus        76 ~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------  127 (158)
                      .+|..  .      +..            ...+++.++++.+++.+..+ +++.+|||||||||+||+|++.        
T Consensus        80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLD  158 (362)
T 2it1_A           80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-RYPWQLSGGQQQRVAIARALVKEPEVLLLD  158 (362)
T ss_dssp             ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhh-CChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            44421  1      111            01246778999999987655 5679999999999999999775        


Q ss_pred             ----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                          +||+..+..+.+.++++    +.|+|+||||+++
T Consensus       159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~  196 (362)
T 2it1_A          159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE  196 (362)
T ss_dssp             SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence                79999999888887654    6799999999753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.97  E-value=2.9e-32  Score=207.12  Aligned_cols=141  Identities=22%  Similarity=0.294  Sum_probs=107.8

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------eeeeccccch------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------LRIGRHSRHL------   80 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------~~~~~~~~~~------   80 (158)
                      |+.+.++ ++.|+.. .++|+++||+|++|++++|+||||||||||+++|++...+.       ..+++.+|..      
T Consensus         4 ~l~i~~l-~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~   81 (253)
T 2nq2_C            4 ALSVENL-GFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY   81 (253)
T ss_dssp             EEEEEEE-EEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCC
T ss_pred             eEEEeeE-EEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCC
Confidence            5666666 8999622 35899999999999999999999999999999999754321       1244443321      


Q ss_pred             --hhH----------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538           81 --EDL----------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLD  130 (158)
Q Consensus        81 --~~~----------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD  130 (158)
                        .+.                ....+++.++++.+++.+..+ +++.+|||||||||+||++++.            +||
T Consensus        82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD  160 (253)
T 2nq2_C           82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-REFTSLSGGQRQLILIARAIASECKLILLDEPTSALD  160 (253)
T ss_dssp             BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSC
T ss_pred             CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence              000                011355778999999986554 5679999999999999998875            699


Q ss_pred             HHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          131 TQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       131 ~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +.++..+.+.++++    +.|||++|||+++
T Consensus       161 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~  191 (253)
T 2nq2_C          161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ  191 (253)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            99999999888664    5799999999753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.97  E-value=1.5e-32  Score=209.62  Aligned_cols=141  Identities=21%  Similarity=0.327  Sum_probs=107.0

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------   69 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------   69 (158)
                      +|+++.++ +++|+.  .++|+|+||+|++|++++|+||||||||||+++|++...+                       
T Consensus         5 ~~l~i~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   81 (262)
T 1b0u_A            5 NKLHVIDL-HKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK   81 (262)
T ss_dssp             CCEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred             ceEEEeeE-EEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccc
Confidence            46777676 999964  3589999999999999999999999999999999863211                       


Q ss_pred             ----------ceeeeccccch--------hhHh-------------hHHHHHHHHHHHcCCCCC-CCCCCCCCCChHHHH
Q 044538           70 ----------KLRIGRHSRHL--------EDLL-------------TMEEAVHAKLRKFGLPGH-NHLTPIANLSGGQKV  117 (158)
Q Consensus        70 ----------~~~~~~~~~~~--------~~~~-------------~~~~~~~~~l~~~~l~~~-~~~~~~~~LSgGqkq  117 (158)
                                +..+++.+|..        .+.+             ...+++.++++.+++.+. .. +++.+|||||||
T Consensus        82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~~LSgGq~q  160 (262)
T 1b0u_A           82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-KYPVHLSGGQQQ  160 (262)
T ss_dssp             ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-SCGGGSCHHHHH
T ss_pred             ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-CCcccCCHHHHH
Confidence                      01144443321        0110             012456788999999765 44 567999999999


Q ss_pred             HHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          118 RVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       118 rv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ||+||+|++.            +||+.++..+++.++++   +.|||+||||+++
T Consensus       161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~  215 (262)
T 1b0u_A          161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF  215 (262)
T ss_dssp             HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            9999998875            69999999999888654   5799999999753

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.97  E-value=3.5e-32  Score=215.59  Aligned_cols=140  Identities=21%  Similarity=0.265  Sum_probs=106.7

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeec
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGR   75 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~   75 (158)
                      ++.+.++ +++|+.  ..+|+++||++++||+++|+||||||||||+++|++....                  ...+++
T Consensus         3 ~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~   79 (359)
T 2yyz_A            3 SIRVVNL-KKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM   79 (359)
T ss_dssp             CEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred             EEEEEEE-EEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEE
Confidence            3555565 888864  3589999999999999999999999999999999964321                  112454


Q ss_pred             cccch--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538           76 HSRHL--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------  127 (158)
Q Consensus        76 ~~~~~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------  127 (158)
                      .+|..  .+.++                  ..+++.++++.+++.+..+ +++.+|||||||||+||+|++.        
T Consensus        80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSgGq~QRvalArAL~~~P~lLLLD  158 (359)
T 2yyz_A           80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLD-RKPTQLSGGQQQRVALARALVKQPKVLLFD  158 (359)
T ss_dssp             ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            44421  11100                  1246788999999987655 5679999999999999999875        


Q ss_pred             ----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                          +||+..+..+.+.++++    +.|+|+||||+++
T Consensus       159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~  196 (359)
T 2yyz_A          159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE  196 (359)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence                79999999888887654    6799999999753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.97  E-value=2.8e-32  Score=205.74  Aligned_cols=141  Identities=17%  Similarity=0.224  Sum_probs=106.7

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------c
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------K   70 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~   70 (158)
                      .+|+.+.++ +++|+.  .++|+++||+|++||+++|+||||||||||+++|++...+                     +
T Consensus         4 ~~~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   80 (240)
T 1ji0_A            4 DIVLEVQSL-HVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR   80 (240)
T ss_dssp             SEEEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             CceEEEEeE-EEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHh
Confidence            457777776 999965  3589999999999999999999999999999999864210                     0


Q ss_pred             eeeeccccch--------hhHh-----------hHHHHHHHHHHHcC-CCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           71 LRIGRHSRHL--------EDLL-----------TMEEAVHAKLRKFG-LPGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        71 ~~~~~~~~~~--------~~~~-----------~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      ..+++.+|..        .+.+           ...+.+.++++.++ +.+... +++.+|||||||||+||++++.   
T Consensus        81 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~  159 (240)
T 1ji0_A           81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLK-QLGGTLSGGEQQMLAIGRALMSRPK  159 (240)
T ss_dssp             TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTT-SBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred             CCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhc-CChhhCCHHHHHHHHHHHHHHcCCC
Confidence            1245444321        0110           11245667888884 876554 5679999999999999998875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                               +||+.++..+++.++++   +.|||+||||++
T Consensus       160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~  200 (240)
T 1ji0_A          160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL  200 (240)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence                     79999999999888664   579999999974

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.97  E-value=6.8e-32  Score=200.49  Aligned_cols=139  Identities=23%  Similarity=0.301  Sum_probs=107.2

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------ceeeecccc
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------KLRIGRHSR   78 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------~~~~~~~~~   78 (158)
                      ++++.++ +++|++   ++|+++||+|++||+++|+||||||||||+++|++...+               +..+++.+|
T Consensus        10 ~l~~~~l-s~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q   85 (214)
T 1sgw_A           10 KLEIRDL-SVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE   85 (214)
T ss_dssp             EEEEEEE-EEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred             eEEEEEE-EEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence            5677776 999964   589999999999999999999999999999999864321               112444443


Q ss_pred             ch--------hhHhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538           79 HL--------EDLLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------H  128 (158)
Q Consensus        79 ~~--------~~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~  128 (158)
                      ..        .+.+.          ..+++.++++.++++..  .+++.+||||||||++||++++.            +
T Consensus        86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~  163 (214)
T 1sgw_A           86 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA  163 (214)
T ss_dssp             SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred             CCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcC
Confidence            21        11110          12457788999999876  46779999999999999988765            6


Q ss_pred             CCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538          129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI  158 (158)
Q Consensus       129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~  158 (158)
                      ||+.++..+++.++++   +.|||++|||++++
T Consensus       164 LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~  196 (214)
T 1sgw_A          164 IDEDSKHKVLKSILEILKEKGIVIISSREELSY  196 (214)
T ss_dssp             SCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTT
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            9999999888888665   47999999998764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.97  E-value=3.1e-32  Score=209.63  Aligned_cols=141  Identities=25%  Similarity=0.296  Sum_probs=107.0

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------c
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------K   70 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~   70 (158)
                      +++.+.++ ++.|++  .++|+|+||+|++||+++|+||||||||||+++|++....                      +
T Consensus        20 ~~l~~~~l-~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   96 (279)
T 2ihy_A           20 MLIQLDQI-GRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR   96 (279)
T ss_dssp             EEEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred             ceEEEEeE-EEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence            46777666 999965  3589999999999999999999999999999999864211                      0


Q ss_pred             eeeeccccchh----------hHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 044538           71 LRIGRHSRHLE----------DLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV  124 (158)
Q Consensus        71 ~~~~~~~~~~~----------~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~  124 (158)
                      ..+++.+|...          +.+                ...+++.++++.+++.+... +++.+|||||||||+||+|
T Consensus        97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqkqRv~lAra  175 (279)
T 2ihy_A           97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-QYIGYLSTGEKQRVMIARA  175 (279)
T ss_dssp             TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHH
Confidence            12444333210          000                01235677899999976554 5679999999999999998


Q ss_pred             Hhh------------CCCHHHHHHHHHHHhhc---CCeE--EEEeecCCC
Q 044538          125 SMY------------HLDTQSIVAVAVTLDEF---AGGV--VLVSHDSRL  157 (158)
Q Consensus       125 ~l~------------~lD~~~~~~l~~~l~~~---~~tv--i~vtHd~~~  157 (158)
                      ++.            +||+.++..+++.++++   +.||  |+||||+++
T Consensus       176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~  225 (279)
T 2ihy_A          176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE  225 (279)
T ss_dssp             HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG
T ss_pred             HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH
Confidence            875            69999999999888665   5789  999999865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.97  E-value=8.3e-32  Score=205.95  Aligned_cols=143  Identities=24%  Similarity=0.326  Sum_probs=107.7

Q ss_pred             hhhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------ceee
Q 044538           14 MLQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------~~~~   73 (158)
                      |+.+.++ +++|+...   .++|+++||+|++|++++|+||||||||||+++|++....                 +..+
T Consensus         2 ~l~~~~l-~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i   80 (266)
T 2yz2_A            2 RIEVVNV-SHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI   80 (266)
T ss_dssp             CEEEEEE-EEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGE
T ss_pred             EEEEEEE-EEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhE
Confidence            3555565 89996222   3589999999999999999999999999999999864211                 1124


Q ss_pred             eccccch---------hhHh--------h---HHHHHHHHHHHcCCC--CCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           74 GRHSRHL---------EDLL--------T---MEEAVHAKLRKFGLP--GHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        74 ~~~~~~~---------~~~~--------~---~~~~~~~~l~~~~l~--~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      ++.+|..         .+.+        .   ..+++.++++.+++.  +..+ +++.+|||||||||+||++++.    
T Consensus        81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~l  159 (266)
T 2yz2_A           81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-RVPFFLSGGEKRRVAIASVIVHEPDI  159 (266)
T ss_dssp             EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT-CCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccccc-CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            5544431         0110        0   124577899999997  6554 5679999999999999998775    


Q ss_pred             --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI  158 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~  158 (158)
                              +||+.+...+++.++++   +.|||+||||++++
T Consensus       160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~  201 (266)
T 2yz2_A          160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV  201 (266)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred             EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence                    69999999999888664   57999999998763

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.97  E-value=1.5e-31  Score=204.60  Aligned_cols=144  Identities=23%  Similarity=0.343  Sum_probs=105.6

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh--h---cce--------------
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR--R---QKL--------------   71 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~--~---~~~--------------   71 (158)
                      ..+|+.+.++ ++.|++  .++|+|+||+|++|++++|+||||||||||+++|++..  .   ..+              
T Consensus        17 ~~~~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~   93 (267)
T 2zu0_C           17 GSHMLSIKDL-HVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPED   93 (267)
T ss_dssp             ---CEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHH
T ss_pred             CCceEEEEeE-EEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHH
Confidence            3457777776 999964  35899999999999999999999999999999999852  1   000              


Q ss_pred             ----eeeccccch--------hh-------Hh------------hHHHHHHHHHHHcCCCCCCCCCCCC-CCChHHHHHH
Q 044538           72 ----RIGRHSRHL--------ED-------LL------------TMEEAVHAKLRKFGLPGHNHLTPIA-NLSGGQKVRV  119 (158)
Q Consensus        72 ----~~~~~~~~~--------~~-------~~------------~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv  119 (158)
                          .+++.+|..        .+       ..            ...+++.++++.+++.....++++. +|||||||||
T Consensus        94 ~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv  173 (267)
T 2zu0_C           94 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN  173 (267)
T ss_dssp             HHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH
T ss_pred             HhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence                133333321        00       00            0123567889999996433335555 5999999999


Q ss_pred             HHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          120 MFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       120 ~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      +||+|++.            +||+.++..+++.++++   +.|||+||||+++
T Consensus       174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~  226 (267)
T 2zu0_C          174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI  226 (267)
T ss_dssp             HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH
Confidence            99998875            69999999999998776   4699999999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.97  E-value=5.3e-32  Score=213.82  Aligned_cols=138  Identities=20%  Similarity=0.257  Sum_probs=105.3

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH   76 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~   76 (158)
                      +.+.++ +++|+.  . +|+++||++++||+++|+||||||||||+++|++....                  +..+++.
T Consensus         2 l~~~~l-~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v   77 (348)
T 3d31_A            2 IEIESL-SRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV   77 (348)
T ss_dssp             EEEEEE-EEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred             EEEEEE-EEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence            455555 888864  3 89999999999999999999999999999999974321                  0124444


Q ss_pred             ccch--hhHhhH---------------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538           77 SRHL--EDLLTM---------------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------  127 (158)
Q Consensus        77 ~~~~--~~~~~~---------------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------  127 (158)
                      +|..  .+.+++               .+++.++++.+++.+..+ +++.+|||||||||+||+|++.            
T Consensus        78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s  156 (348)
T 3d31_A           78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-RNPLTLSGGEQQRVALARALVTNPKILLLDEPLS  156 (348)
T ss_dssp             CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred             ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence            4421  111110               156778999999987665 5679999999999999998765            


Q ss_pred             CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +||+..+..+.+.++++    +.|+|+||||+++
T Consensus       157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~  190 (348)
T 3d31_A          157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE  190 (348)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            79999999888887654    5799999999753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.97  E-value=5e-32  Score=206.15  Aligned_cols=140  Identities=17%  Similarity=0.234  Sum_probs=106.7

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceee
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRI   73 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~   73 (158)
                      +++++.++ ++.|+.  ..+|+++||+|++||+++|+||||||||||+++|++...+                   +..+
T Consensus        14 ~~l~i~~l-~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i   90 (256)
T 1vpl_A           14 GAVVVKDL-RKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI   90 (256)
T ss_dssp             CCEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred             CeEEEEEE-EEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence            35677666 999964  3589999999999999999999999999999999864211                   0124


Q ss_pred             eccccch--------hhHh---------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538           74 GRHSRHL--------EDLL---------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        74 ~~~~~~~--------~~~~---------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                      ++.+|..        .+.+         .   ..+++.++++.+++.+... +++.+|||||||||+||++++.      
T Consensus        91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~lll  169 (256)
T 1vpl_A           91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-DRVSTYSKGMVRKLLIARALMVNPRLAI  169 (256)
T ss_dssp             EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-SBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            4444321        1111         0   1245678899999986554 5679999999999999998775      


Q ss_pred             ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                            +||+.++..+++.++++   +.|||++|||++
T Consensus       170 LDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~  207 (256)
T 1vpl_A          170 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML  207 (256)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred             EeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence                  79999999999888664   579999999965

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.97  E-value=3.9e-32  Score=216.29  Aligned_cols=140  Identities=19%  Similarity=0.279  Sum_probs=106.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------   69 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------   69 (158)
                      ++++.++ +++|+.  ..+|+|+||+|++||+++|+||||||||||+++|++....                        
T Consensus         3 ~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~   79 (372)
T 1g29_1            3 GVRLVDV-WKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK   79 (372)
T ss_dssp             EEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred             EEEEEeE-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence            3555565 888864  3589999999999999999999999999999999964211                        


Q ss_pred             ceeeeccccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           70 KLRIGRHSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        70 ~~~~~~~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ...+++.+|..  .      +..            ...+++.++++.+++.+..+ +++.+|||||||||+||+|++.  
T Consensus        80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P  158 (372)
T 1g29_1           80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-RKPRELSGGQRQRVALGRAIVRKP  158 (372)
T ss_dssp             GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-CCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CCcccCCHHHHHHHHHHHHHhcCC
Confidence            11244444421  1      111            01246778999999987655 5679999999999999999775  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                +||+..+..+.+.++++    +.|+|+||||+++
T Consensus       159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~  202 (372)
T 1g29_1          159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE  202 (372)
T ss_dssp             SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred             CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence                      79999999888877654    6799999999753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.97  E-value=6.5e-32  Score=214.91  Aligned_cols=140  Identities=19%  Similarity=0.247  Sum_probs=106.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeec
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGR   75 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~   75 (158)
                      ++.+.++ +++|+.  ..+|+++||+|++||+++|+||||||||||+++|++....                  ...+++
T Consensus        11 ~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~   87 (372)
T 1v43_A           11 EVKLENL-TKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM   87 (372)
T ss_dssp             CEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred             eEEEEEE-EEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence            3566666 888864  3589999999999999999999999999999999964321                  112444


Q ss_pred             cccch--hh------Hh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538           76 HSRHL--ED------LL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------  127 (158)
Q Consensus        76 ~~~~~--~~------~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------  127 (158)
                      .+|..  .+      ..            ...+++.++++.+++.+..+ +++.+|||||||||+||+|++.        
T Consensus        88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLD  166 (372)
T 1v43_A           88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYPAQLSGGQRQRVAVARAIVVEPDVLLMD  166 (372)
T ss_dssp             EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-SCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred             EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            44431  11      10            11246788999999987655 5679999999999999999775        


Q ss_pred             ----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                          +||+..+..+.+.++++    +.|+|+||||+++
T Consensus       167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~  204 (372)
T 1v43_A          167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE  204 (372)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence                79999999888887654    6799999999753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.97  E-value=1.3e-31  Score=202.09  Aligned_cols=135  Identities=21%  Similarity=0.234  Sum_probs=103.0

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH   76 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~   76 (158)
                      +++.++ +++|+.    +|+|+||++++ ++++|+||||||||||+++|++...+                  +..+++.
T Consensus         2 l~~~~l-~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v   75 (240)
T 2onk_A            2 FLKVRA-EKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV   75 (240)
T ss_dssp             CEEEEE-EEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred             EEEEEE-EEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence            455555 888853    49999999999 99999999999999999999964321                  1124444


Q ss_pred             ccch--h------hHh----------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           77 SRHL--E------DLL----------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        77 ~~~~--~------~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      +|..  .      +..          ...+++.++++.+++.+..+ +++.+||||||||++||++++.           
T Consensus        76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  154 (240)
T 2onk_A           76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-RKPARLSGGERQRVALARALVIQPRLLLLDEPL  154 (240)
T ss_dssp             CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred             cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            4321  0      110          11356778999999987654 5779999999999999998775           


Q ss_pred             -CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538          128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR  156 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~  156 (158)
                       +||+.++..+++.++++    +.|||++|||++
T Consensus       155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~  188 (240)
T 2onk_A          155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI  188 (240)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence             69999999999888654    579999999975

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.97  E-value=2.8e-32  Score=215.92  Aligned_cols=140  Identities=21%  Similarity=0.266  Sum_probs=106.2

Q ss_pred             hhhhheeeeEEcCCCCCc--ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           14 MLQLIEVISFSYPNLQDI--RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~--~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      |+.+.++ +++|+.  ..  +|+|+||+|++||+++|+||||||||||+++|++....                      
T Consensus         3 ~l~i~~l-~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~   79 (353)
T 1oxx_K            3 RIIVKNV-SKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP   79 (353)
T ss_dssp             CEEEEEE-EEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred             EEEEEeE-EEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence            4555565 888864  35  89999999999999999999999999999999964211                      


Q ss_pred             -ceeeeccccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           70 -KLRIGRHSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        70 -~~~~~~~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                       +..+++.+|..  .      +..            ...+++.++++.+++.+..+ +++.+|||||||||+||+|++. 
T Consensus        80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-~~~~~LSGGq~QRvalAraL~~~  158 (353)
T 1oxx_K           80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKD  158 (353)
T ss_dssp             GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHhC
Confidence             11244444321  1      110            11356788999999987655 5679999999999999999875 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                 +||+..+..+.+.++++    +.|+|+||||+++
T Consensus       159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~  203 (353)
T 1oxx_K          159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD  203 (353)
T ss_dssp             CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                       69999988888877654    6799999999753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.97  E-value=3e-31  Score=201.21  Aligned_cols=140  Identities=21%  Similarity=0.283  Sum_probs=100.5

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh--hhc---ce-----------------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR--RRQ---KL-----------------   71 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~--~~~---~~-----------------   71 (158)
                      |+.+.++ +++|+.  ..+|+|+||+|++||+++|+||||||||||+++|++.  ..+   .+                 
T Consensus         3 ~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~   79 (250)
T 2d2e_A            3 QLEIRDL-WASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR   79 (250)
T ss_dssp             EEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred             eEEEEeE-EEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence            4566666 888864  3589999999999999999999999999999999985  210   00                 


Q ss_pred             -eeeccccch--------hhHh---------------hHHHHHHHHHHHcCCC-CCCCCCCCCC-CChHHHHHHHHHHHH
Q 044538           72 -RIGRHSRHL--------EDLL---------------TMEEAVHAKLRKFGLP-GHNHLTPIAN-LSGGQKVRVMFTLVS  125 (158)
Q Consensus        72 -~~~~~~~~~--------~~~~---------------~~~~~~~~~l~~~~l~-~~~~~~~~~~-LSgGqkqrv~ia~~~  125 (158)
                       .+++.+|..        .+..               ...+++.++++.++++ ... ++++.+ |||||||||+||+++
T Consensus        80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~~LSgGqkQrv~iAraL  158 (250)
T 2d2e_A           80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-SRYLNEGFSGGEKKRNEILQLL  158 (250)
T ss_dssp             TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-GSBTTCC----HHHHHHHHHHH
T ss_pred             CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-cCCcccCCCHHHHHHHHHHHHH
Confidence             123333221        0100               0123566788999995 444 356788 999999999999987


Q ss_pred             hh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          126 MY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       126 l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      +.            +||+.++..+++.++++   +.|||+||||+++
T Consensus       159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~  205 (250)
T 2d2e_A          159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI  205 (250)
T ss_dssp             HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG
T ss_pred             HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            75            79999999999988765   4699999999864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.97  E-value=6e-31  Score=199.26  Aligned_cols=141  Identities=22%  Similarity=0.296  Sum_probs=100.9

Q ss_pred             hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538           16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR   75 (158)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~   75 (158)
                      .+.++ +++|+++...+|+++||+|++||+++|+||||||||||+++|++....                    +..+++
T Consensus         9 ~~~~l-~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~   87 (247)
T 2ff7_A            9 TFRNI-RFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV   87 (247)
T ss_dssp             EEEEE-EEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             eEEEE-EEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEE
Confidence            45555 999942224689999999999999999999999999999999864211                    012444


Q ss_pred             cccch-------hhHhh------HHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh-----
Q 044538           76 HSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY-----  127 (158)
Q Consensus        76 ~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~-----  127 (158)
                      .+|..       .+.+.      ..+++.++++.+++.+...          .+++.+|||||||||+||++++.     
T Consensus        88 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ll  167 (247)
T 2ff7_A           88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL  167 (247)
T ss_dssp             ECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            44321       11110      1234556666666643211          13458999999999999999875     


Q ss_pred             -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                             +||+.+...+++.++++  +.|||+||||+++
T Consensus       168 lLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~  206 (247)
T 2ff7_A          168 IFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST  206 (247)
T ss_dssp             EECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence                   69999999999988765  5799999999764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.97  E-value=4.9e-31  Score=201.37  Aligned_cols=139  Identities=22%  Similarity=0.340  Sum_probs=106.8

Q ss_pred             hhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-----------------eeee-
Q 044538           15 LQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-----------------LRIG-   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-----------------~~~~-   74 (158)
                      +.+.++ +++|++.  ..++|+++||+++ |++++|+||||||||||+++|++.. +.                 ..++ 
T Consensus         2 l~~~~l-~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~   78 (263)
T 2pjz_A            2 IQLKNV-GITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST   78 (263)
T ss_dssp             EEEEEE-EEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred             EEEEEE-EEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence            445555 8888641  1358999999999 9999999999999999999999753 21                 1245 


Q ss_pred             ccccchh------hHhh--------HHHHHHHHHHHcCCC-CCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538           75 RHSRHLE------DLLT--------MEEAVHAKLRKFGLP-GHNHLTPIANLSGGQKVRVMFTLVSMY------------  127 (158)
Q Consensus        75 ~~~~~~~------~~~~--------~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~ia~~~l~------------  127 (158)
                      +.+|...      +.+.        ..+++.++++.+++. +... +++.+||||||||++||++++.            
T Consensus        79 ~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts  157 (263)
T 2pjz_A           79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR-RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE  157 (263)
T ss_dssp             CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG-SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred             EeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence            5544321      1111        124567889999997 6544 5679999999999999998775            


Q ss_pred             CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538          128 HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL  157 (158)
Q Consensus       128 ~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~  157 (158)
                      +||+.++..+.+.++++..|||++|||+++
T Consensus       158 ~LD~~~~~~l~~~L~~~~~tviivtHd~~~  187 (263)
T 2pjz_A          158 NVDAARRHVISRYIKEYGKEGILVTHELDM  187 (263)
T ss_dssp             TCCHHHHHHHHHHHHHSCSEEEEEESCGGG
T ss_pred             ccCHHHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence            699999999999998876699999999764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=196.23  Aligned_cols=143  Identities=19%  Similarity=0.237  Sum_probs=99.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce----eeeccccch------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL----RIGRHSRHL------   80 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~----~~~~~~~~~------   80 (158)
                      ++.+.++ ++.|+....++|+++||+|++|++++|+||||||||||+++|++...+   .+    .+++.+|..      
T Consensus         3 ~l~~~~l-~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t   81 (237)
T 2cbz_A            3 SITVRNA-TFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS   81 (237)
T ss_dssp             CEEEEEE-EEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred             eEEEEEE-EEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence            3556566 999974334689999999999999999999999999999999976432   11    244444431      


Q ss_pred             -hhHhhH-----HHHHHHHHHHc------CCCCC----CCCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538           81 -EDLLTM-----EEAVHAKLRKF------GLPGH----NHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ  132 (158)
Q Consensus        81 -~~~~~~-----~~~~~~~l~~~------~l~~~----~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~  132 (158)
                       .+.+..     .+...++++.+      ++.+.    ...+++.+||||||||++||++++.            +||+.
T Consensus        82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~  161 (237)
T 2cbz_A           82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH  161 (237)
T ss_dssp             HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred             HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence             111100     11222333333      32211    0124678999999999999998875            69999


Q ss_pred             HHHHHHHHHh---hc--CCeEEEEeecCCC
Q 044538          133 SIVAVAVTLD---EF--AGGVVLVSHDSRL  157 (158)
Q Consensus       133 ~~~~l~~~l~---~~--~~tvi~vtHd~~~  157 (158)
                      +...+++.+.   +.  +.|||+||||+++
T Consensus       162 ~~~~i~~~l~~~~~~~~~~tviivtH~~~~  191 (237)
T 2cbz_A          162 VGKHIFENVIGPKGMLKNKTRILVTHSMSY  191 (237)
T ss_dssp             HHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred             HHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence            9999999884   32  5799999999875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=207.21  Aligned_cols=143  Identities=18%  Similarity=0.231  Sum_probs=108.4

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceee
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRI   73 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~   73 (158)
                      ..+.+.++ +++|+.+...+|+++||+|++||+++|+||||||||||+++|++....                   +..+
T Consensus        18 ~~i~~~~l-~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~i   96 (390)
T 3gd7_A           18 GQMTVKDL-TAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF   96 (390)
T ss_dssp             CCEEEEEE-EEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred             CeEEEEEE-EEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCE
Confidence            35677666 999964445689999999999999999999999999999999974321                   0123


Q ss_pred             eccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCCCCCCCC-----------CChHHHHHHHHHHHHhh---
Q 044538           74 GRHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNHLTPIAN-----------LSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkqrv~ia~~~l~---  127 (158)
                      ++.+|..       .+.+.     ..+++.++++.+++.+... +++.+           |||||||||+||||++.   
T Consensus        97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~-~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~  175 (390)
T 3gd7_A           97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIE-QFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK  175 (390)
T ss_dssp             EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHT-TSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHh-hcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence            4444321       11111     1356778899999976554 34466           99999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||+..+..+.+.+++.  +.|+|+||||++.
T Consensus       176 lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~  216 (390)
T 3gd7_A          176 ILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEA  216 (390)
T ss_dssp             EEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGG
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHH
Confidence                     69999999999999775  4699999999753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.97  E-value=1.8e-30  Score=198.99  Aligned_cols=142  Identities=24%  Similarity=0.358  Sum_probs=102.4

Q ss_pred             hhhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ce
Q 044538           13 PMLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KL   71 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~   71 (158)
                      +++.+.++ ++.|+.. ...+|+++||+|++|++++|+||||||||||+++|++...+                    +.
T Consensus        15 ~~l~~~~l-~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   93 (271)
T 2ixe_A           15 GLVKFQDV-SFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT   93 (271)
T ss_dssp             CCEEEEEE-EECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred             ceEEEEEE-EEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence            46777666 8888651 24589999999999999999999999999999999864211                    01


Q ss_pred             eeeccccch-------hhHhh-----------HH-----HHHHHHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538           72 RIGRHSRHL-------EDLLT-----------ME-----EAVHAKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSM  126 (158)
Q Consensus        72 ~~~~~~~~~-------~~~~~-----------~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l  126 (158)
                      .+++.+|..       .+.+.           ..     ..+.++++.+  ++..... +++.+|||||||||+||++++
T Consensus        94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LSgGq~QRv~lAraL~  172 (271)
T 2ixe_A           94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG-ETGNQLSGGQRQAVALARALI  172 (271)
T ss_dssp             HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC-GGGTTSCHHHHHHHHHHHHHT
T ss_pred             cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhc-CCcCCCCHHHHHHHHHHHHHh
Confidence            244443321       01100           00     1123456666  5655444 567899999999999999987


Q ss_pred             h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538          127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR  156 (158)
Q Consensus       127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~  156 (158)
                      .            +||+.+...+++.++++    +.|||+||||++
T Consensus       173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~  218 (271)
T 2ixe_A          173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS  218 (271)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence            5            69999999999998765    469999999975

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.97  E-value=3.7e-30  Score=196.26  Aligned_cols=143  Identities=21%  Similarity=0.300  Sum_probs=102.3

Q ss_pred             hhhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------------------eee
Q 044538           14 MLQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------------LRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------------~~~   73 (158)
                      ++.+.++ ++.|+... .++|+++||+|++|++++|+||||||||||+++|++.....                   ..+
T Consensus        17 ~l~i~~l-~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i   95 (260)
T 2ghi_A           17 NIEFSDV-NFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSII   95 (260)
T ss_dssp             CEEEEEE-EECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTE
T ss_pred             eEEEEEE-EEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccE
Confidence            5666666 88886532 35899999999999999999999999999999998643210                   113


Q ss_pred             eccccch-------hhHh------hHHHHHHHHHHHcCCCCCC----------CCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           74 GRHSRHL-------EDLL------TMEEAVHAKLRKFGLPGHN----------HLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~------~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      ++.+|..       .+.+      ...+++.++++.+++.+..          ..+++.+|||||||||+||++++.   
T Consensus        96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~  175 (260)
T 2ghi_A           96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK  175 (260)
T ss_dssp             EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence            4433321       1111      0123455666666653210          113568999999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||+.+...+++.++++  +.|||+||||+++
T Consensus       176 lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~  216 (260)
T 2ghi_A          176 IVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST  216 (260)
T ss_dssp             EEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence                     69999999999888765  4699999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.97  E-value=6.4e-31  Score=198.59  Aligned_cols=140  Identities=22%  Similarity=0.291  Sum_probs=101.3

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG   74 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~   74 (158)
                      +.+.++ +++|++ ..++|+++||+|++|++++|+||||||||||+++|++....                    +..++
T Consensus         2 l~~~~l-~~~y~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (243)
T 1mv5_A            2 LSARHV-DFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG   79 (243)
T ss_dssp             EEEEEE-EECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             EEEEEE-EEEeCC-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence            445555 888842 24589999999999999999999999999999999864211                    01133


Q ss_pred             ccccch-------hhHh-------hHHHHHHHHHHHcCCCCCCCC----------CCCCCCChHHHHHHHHHHHHhh---
Q 044538           75 RHSRHL-------EDLL-------TMEEAVHAKLRKFGLPGHNHL----------TPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        75 ~~~~~~-------~~~~-------~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      +.+|..       .+.+       ...+++.++++.+++.+....          +++.+||||||||++||++++.   
T Consensus        80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~  159 (243)
T 1mv5_A           80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (243)
T ss_dssp             EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence            433321       1111       013456778888888664432          2457999999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                               +||+.+...+++.++++  +.|||+||||++
T Consensus       160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~  199 (243)
T 1mv5_A          160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS  199 (243)
T ss_dssp             EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHH
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence                     69998888888877654  579999999975

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.97  E-value=2.4e-30  Score=196.16  Aligned_cols=126  Identities=26%  Similarity=0.299  Sum_probs=96.5

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--e-----------------eeeccccch--------hhH
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--L-----------------RIGRHSRHL--------EDL   83 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--~-----------------~~~~~~~~~--------~~~   83 (158)
                      .+|+++||+|++||+++|+||||||||||+++|++.....  +                 .+++.+|..        .+.
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~   93 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY   93 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence            4799999999999999999999999999999999753211  1                 133333321        011


Q ss_pred             hh-------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------------------CCCHHHHHHH
Q 044538           84 LT-------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------------------HLDTQSIVAV  137 (158)
Q Consensus        84 ~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------------------~lD~~~~~~l  137 (158)
                      +.       ..+++.++++.+++.+..+ +++.+||||||||++||++++.                   +||+.++..+
T Consensus        94 l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l  172 (249)
T 2qi9_C           94 LTLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL  172 (249)
T ss_dssp             HHTTCSSTTCHHHHHHHHHHTTCGGGTT-SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred             HHHhhccCCcHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence            10       1356778999999987655 5679999999999999988764                   5899999999


Q ss_pred             HHHHhhc---CCeEEEEeecCCC
Q 044538          138 AVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       138 ~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      .+.++++   +.|||++|||+++
T Consensus       173 ~~~l~~l~~~g~tviivtHd~~~  195 (249)
T 2qi9_C          173 DKILSALSQQGLAIVMSSHDLNH  195 (249)
T ss_dssp             HHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHH
Confidence            9888665   5799999999753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.97  E-value=2.4e-30  Score=193.96  Aligned_cols=142  Identities=17%  Similarity=0.203  Sum_probs=98.5

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e----eeeccccch------
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L----RIGRHSRHL------   80 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~----~~~~~~~~~------   80 (158)
                      ++.+.++ ++.|+.+..++|+++||+|++|++++|+||||||||||+++|++...+.   +    .+++.+|..      
T Consensus         6 ~l~~~~l-~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~t   84 (229)
T 2pze_A            6 EVVMENV-TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGT   84 (229)
T ss_dssp             EEEEEEE-EECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBC
T ss_pred             eEEEEEE-EEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCC
Confidence            5666666 8888643346899999999999999999999999999999999764321   1    244444421      


Q ss_pred             -hhHhhH-----HHHHHHHHHHcCCCCCC----------CCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538           81 -EDLLTM-----EEAVHAKLRKFGLPGHN----------HLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ  132 (158)
Q Consensus        81 -~~~~~~-----~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~  132 (158)
                       .+.+..     .....+.++.+++....          ..+++.+||||||||++||++++.            +||+.
T Consensus        85 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~  164 (229)
T 2pze_A           85 IKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL  164 (229)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHH
T ss_pred             HHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHH
Confidence             111100     11223344444442110          112457999999999999998775            69999


Q ss_pred             HHHHHHHH-Hhhc--CCeEEEEeecCC
Q 044538          133 SIVAVAVT-LDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       133 ~~~~l~~~-l~~~--~~tvi~vtHd~~  156 (158)
                      +...+++. +++.  +.|||++|||++
T Consensus       165 ~~~~i~~~l~~~~~~~~tvi~vtH~~~  191 (229)
T 2pze_A          165 TEKEIFESCVCKLMANKTRILVTSKME  191 (229)
T ss_dssp             HHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence            99999986 4443  479999999964

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.96  E-value=5.7e-30  Score=199.13  Aligned_cols=140  Identities=26%  Similarity=0.338  Sum_probs=100.8

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+.+.++ +|+|+.. .++|+|+||+|++|++++|+||||||||||+++|++....                    +..+
T Consensus        53 ~i~~~~v-s~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i  130 (306)
T 3nh6_A           53 RIEFENV-HFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI  130 (306)
T ss_dssp             CEEEEEE-EEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred             eEEEEEE-EEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence            4666666 9999754 3589999999999999999999999999999999864211                    1124


Q ss_pred             eccccch-------hhHhh------HHHHHHHHHHHcCCC-----------CCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLP-----------GHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~-----------~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ++.+|..       .+++.      ..+++.++++.+++.           .... ++..+||||||||++||||++.  
T Consensus       131 ~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGGqrQRvaiARAL~~~p  209 (306)
T 3nh6_A          131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGGEKQRVAIARTILKAP  209 (306)
T ss_dssp             EEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHHHHHHHHHHHHHHhCC
Confidence            4444431       11110      123444555554442           2222 3457999999999999999875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                                +||+.+...+.+.+++.  +.|+|+||||++
T Consensus       210 ~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~  250 (306)
T 3nh6_A          210 GIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS  250 (306)
T ss_dssp             SEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence                      69999999999988765  479999999975

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.95  E-value=2.9e-28  Score=203.86  Aligned_cols=142  Identities=26%  Similarity=0.350  Sum_probs=104.1

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      ++++.++ +++|++...++|+|+||++++||+++|+||||||||||++++++...+                    +..+
T Consensus       341 ~i~~~~v-~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b5x_A          341 EVDVKDV-TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF  419 (582)
T ss_pred             eEEEEEE-EEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence            5666666 999975334689999999999999999999999999999999864211                    1124


Q ss_pred             eccccch-------hhHh-------hHHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHL-------EDLL-------TMEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~-------~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ++.+|..       .++.       ..++++.++++.+++.+...          ..+..+||||||||++||||++.  
T Consensus       420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p  499 (582)
T 3b5x_A          420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA  499 (582)
T ss_pred             EEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC
Confidence            4444431       1111       11345667777776643221          12357899999999999999875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                                +||+.+...+.+.+++.  +.|+|+||||++
T Consensus       500 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~  540 (582)
T 3b5x_A          500 PVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS  540 (582)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence                      69999999999988775  479999999975

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.95  E-value=1.4e-28  Score=213.96  Aligned_cols=70  Identities=30%  Similarity=0.522  Sum_probs=59.4

Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeec
Q 044538           88 EAVHAKLRKFGLPGHN-HLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHD  154 (158)
Q Consensus        88 ~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd  154 (158)
                      ++++++++.+|+.... ..+++.+|||||||||+||++++.            +||+.+...+.+.+++++.|||+||||
T Consensus       878 ~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD  957 (986)
T 2iw3_A          878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHS  957 (986)
T ss_dssp             HHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSC
T ss_pred             HHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECC
Confidence            4567889999997432 235779999999999999988775            799999999999999998999999999


Q ss_pred             CCC
Q 044538          155 SRL  157 (158)
Q Consensus       155 ~~~  157 (158)
                      +++
T Consensus       958 ~e~  960 (986)
T 2iw3_A          958 AEF  960 (986)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.95  E-value=7.4e-28  Score=201.26  Aligned_cols=143  Identities=24%  Similarity=0.296  Sum_probs=102.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+++.++ +++|+....++|+|+||++++||+++|+||||||||||++++++...+                    +..+
T Consensus       339 ~i~~~~v-~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i  417 (578)
T 4a82_A          339 RIDIDHV-SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI  417 (578)
T ss_dssp             CEEEEEE-EECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred             eEEEEEE-EEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            3566666 999976555789999999999999999999999999999999864221                    1124


Q ss_pred             eccccch-------hhHhh------HHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh---
Q 044538           74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      ++.+|..       .++..      .++++.++++..++.+...          ..+..+||||||||++||||++.   
T Consensus       418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~  497 (578)
T 4a82_A          418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP  497 (578)
T ss_dssp             EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred             EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence            4444431       11111      1244555666655432111          12346899999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||+.+...+.+.+++.  +.|+|+||||++.
T Consensus       498 illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~  538 (578)
T 4a82_A          498 ILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST  538 (578)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence                     69999999999888765  4799999999864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.95  E-value=8e-28  Score=201.19  Aligned_cols=143  Identities=24%  Similarity=0.327  Sum_probs=103.9

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      ++++.++ +++|++...++|+|+||++++||+++|+||||||||||++++++...+                    +..+
T Consensus       341 ~i~~~~v-~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b60_A          341 DLEFRNV-TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV  419 (582)
T ss_dssp             CEEEEEE-EECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred             cEEEEEE-EEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence            5666666 899974324689999999999999999999999999999999864221                    0124


Q ss_pred             eccccch-------hhHh-------hHHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHL-------EDLL-------TMEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~-------~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ++.+|..       .++.       ..++++.++++.+++.+...          ..+..+||||||||++|||+++.  
T Consensus       420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p  499 (582)
T 3b60_A          420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS  499 (582)
T ss_dssp             EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred             eEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            4444421       1111       11345666777776542111          12457999999999999999875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                                +||+.+...+.+.+++.  +.|+|+||||++.
T Consensus       500 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~  541 (582)
T 3b60_A          500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST  541 (582)
T ss_dssp             SEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence                      69999999999888765  5799999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.95  E-value=9.3e-28  Score=201.42  Aligned_cols=140  Identities=22%  Similarity=0.343  Sum_probs=107.1

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------ceeeeccccch-----
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------KLRIGRHSRHL-----   80 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------~~~~~~~~~~~-----   80 (158)
                      +++.+.++ ++.|++   ..|+++||+|.+||+++|+||||||||||+++|++....       ...+++.+|..     
T Consensus       356 ~~l~~~~l-~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~  431 (607)
T 3bk7_A          356 TLVEYPRL-VKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE  431 (607)
T ss_dssp             EEEEECCE-EEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCS
T ss_pred             eEEEEece-EEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCC
Confidence            46666666 888864   258999999999999999999999999999999975432       12355554431     


Q ss_pred             ---hhHh--------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538           81 ---EDLL--------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV  137 (158)
Q Consensus        81 ---~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l  137 (158)
                         .+..        ...+.+.++++.+++.+... +++.+|||||||||+||++++.            +||+.++..+
T Consensus       432 ~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l  510 (607)
T 3bk7_A          432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYD-RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV  510 (607)
T ss_dssp             SBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTT-SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH
T ss_pred             CcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHH
Confidence               1111        01234667899999986554 6779999999999999988775            7999999999


Q ss_pred             HHHHhhc----CCeEEEEeecCCC
Q 044538          138 AVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       138 ~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .+.++++    +.|||+||||+++
T Consensus       511 ~~~l~~l~~~~g~tvi~vsHd~~~  534 (607)
T 3bk7_A          511 SRAIRHLMEKNEKTALVVEHDVLM  534 (607)
T ss_dssp             HHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHH
Confidence            9888764    5799999999754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.95  E-value=6.5e-28  Score=200.11  Aligned_cols=139  Identities=24%  Similarity=0.283  Sum_probs=101.2

Q ss_pred             hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----------------------
Q 044538           16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K----------------------   70 (158)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~----------------------   70 (158)
                      ++.+.++++|+.. ..+++++| +|++||+++|+||||||||||+++|++...+   .                      
T Consensus        22 ~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~   99 (538)
T 1yqt_A           22 QLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE   99 (538)
T ss_dssp             --CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred             hHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence            4444459999653 24799999 9999999999999999999999999974311   0                      


Q ss_pred             ------eeeeccccchh--hH---hhH---------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           71 ------LRIGRHSRHLE--DL---LTM---------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        71 ------~~~~~~~~~~~--~~---~~~---------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                            ..+++..+...  +.   .+.         .+++.++++.+|+....+ +++.+|||||||||+||++++.   
T Consensus       100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~-~~~~~LSgGekQRv~iAraL~~~P~  178 (538)
T 1yqt_A          100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLE-REIQHLSGGELQRVAIAAALLRNAT  178 (538)
T ss_dssp             HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTT-SBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhh-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence                  01111111110  00   011         134678899999986554 6789999999999999998775   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                               +||+.++.++.+.++++   +.|||+||||+++
T Consensus       179 lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~  220 (538)
T 1yqt_A          179 FYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAV  220 (538)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                     79999999888888665   6899999999754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.95  E-value=6.3e-28  Score=200.19  Aligned_cols=140  Identities=23%  Similarity=0.332  Sum_probs=105.9

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------ceeeeccccch-----
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------KLRIGRHSRHL-----   80 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------~~~~~~~~~~~-----   80 (158)
                      +++.+.++ ++.|++   ..|+++||+|++||+++|+||||||||||+++|++....       ...+++.+|..     
T Consensus       286 ~~l~~~~l-~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~  361 (538)
T 1yqt_A          286 TLVTYPRL-VKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYE  361 (538)
T ss_dssp             EEEEECCE-EEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCS
T ss_pred             eEEEEeeE-EEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCC
Confidence            45666665 778854   358999999999999999999999999999999985432       12355554432     


Q ss_pred             ---hhHh--------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538           81 ---EDLL--------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV  137 (158)
Q Consensus        81 ---~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l  137 (158)
                         .+..        ...+.+.++++.+++.+.. ++++.+|||||||||+||++++.            +||+.++..+
T Consensus       362 ~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i  440 (538)
T 1yqt_A          362 GTVYELLSKIDASKLNSNFYKTELLKPLGIIDLY-DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV  440 (538)
T ss_dssp             SBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGT-TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH
T ss_pred             CcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence               1111        0123456778888987544 46789999999999999988765            7999999999


Q ss_pred             HHHHhhc----CCeEEEEeecCCC
Q 044538          138 AVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       138 ~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .+.++++    +.|||+||||+++
T Consensus       441 ~~~l~~l~~~~g~tvi~vsHd~~~  464 (538)
T 1yqt_A          441 SRAIRHLMEKNEKTALVVEHDVLM  464 (538)
T ss_dssp             HHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHH
Confidence            9888754    6799999999764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.94  E-value=7.5e-28  Score=186.04  Aligned_cols=139  Identities=19%  Similarity=0.217  Sum_probs=87.6

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce----eeeccccch-----
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL----RIGRHSRHL-----   80 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~----~~~~~~~~~-----   80 (158)
                      +++.+.++ ++.  +  ..+|+++||+|++|++++|+||||||||||+++|++....   .+    .+++.+|..     
T Consensus        39 ~~l~~~~l-~~~--~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~  113 (290)
T 2bbs_A           39 DSLSFSNF-SLL--G--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPG  113 (290)
T ss_dssp             --------------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSS
T ss_pred             ceEEEEEE-EEc--C--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcc
Confidence            35666555 553  2  3589999999999999999999999999999999976432   11    244444421     


Q ss_pred             --hhHhh----HHHHHHHHHHHcCCCCCC----------CCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538           81 --EDLLT----MEEAVHAKLRKFGLPGHN----------HLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ  132 (158)
Q Consensus        81 --~~~~~----~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~  132 (158)
                        .+.+.    ......+.++.+++....          ..+++.+||||||||++||++++.            +||+.
T Consensus       114 tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~  193 (290)
T 2bbs_A          114 TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL  193 (290)
T ss_dssp             BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred             cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHH
Confidence              11110    011223344445543211          112347999999999999998775            79999


Q ss_pred             HHHHHHHHH-hhc--CCeEEEEeecCC
Q 044538          133 SIVAVAVTL-DEF--AGGVVLVSHDSR  156 (158)
Q Consensus       133 ~~~~l~~~l-~~~--~~tvi~vtHd~~  156 (158)
                      ++..+++.+ ++.  +.|||+||||++
T Consensus       194 ~~~~i~~~ll~~~~~~~tviivtHd~~  220 (290)
T 2bbs_A          194 TEKEIFESCVCKLMANKTRILVTSKME  220 (290)
T ss_dssp             HHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence            999999864 343  579999999964

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.94  E-value=1e-27  Score=208.60  Aligned_cols=139  Identities=27%  Similarity=0.382  Sum_probs=104.5

Q ss_pred             hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh-hh-----cceeeeccccch---h-----
Q 044538           16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR-RR-----QKLRIGRHSRHL---E-----   81 (158)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~-~~-----~~~~~~~~~~~~---~-----   81 (158)
                      ...++ ++.|++  ..+|+++||+|++|++++|+||||||||||+++|++. ..     ....+++.++..   .     
T Consensus       437 ~~~~l-s~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv  513 (986)
T 2iw3_A          437 CNCEF-SLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSV  513 (986)
T ss_dssp             EEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBH
T ss_pred             EEeeE-EEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcH
Confidence            33344 788864  3589999999999999999999999999999999842 10     112234433221   1     


Q ss_pred             -hHhh-----HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhh
Q 044538           82 -DLLT-----MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDE  143 (158)
Q Consensus        82 -~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~  143 (158)
                       +...     ..+++.++++.+|+.....++++.+||||||||++||++++.            +||+.++.++.+.|++
T Consensus       514 ~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~  593 (986)
T 2iw3_A          514 LDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT  593 (986)
T ss_dssp             HHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh
Confidence             1110     045677899999995322346789999999999999998775            7999999999999988


Q ss_pred             cCCeEEEEeecCCC
Q 044538          144 FAGGVVLVSHDSRL  157 (158)
Q Consensus       144 ~~~tvi~vtHd~~~  157 (158)
                      .+.|||+||||+++
T Consensus       594 ~g~tvIivSHdl~~  607 (986)
T 2iw3_A          594 CGITSITISHDSVF  607 (986)
T ss_dssp             SCSEEEEECSCHHH
T ss_pred             CCCEEEEEECCHHH
Confidence            67899999999754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.94  E-value=9.7e-28  Score=198.96  Aligned_cols=140  Identities=15%  Similarity=0.227  Sum_probs=102.7

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------eeeeccccchh---
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------LRIGRHSRHLE---   81 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------~~~~~~~~~~~---   81 (158)
                      +++.+.++ ++.|++   ..++.+||+|++||+++|+||||||||||+++|++.....        ..+++.++...   
T Consensus       268 ~~l~~~~l-~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~  343 (538)
T 3ozx_A          268 TKMKWTKI-IKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY  343 (538)
T ss_dssp             EEEEECCE-EEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCC
T ss_pred             ceEEEcce-EEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhccccc
Confidence            34555555 777764   3578889999999999999999999999999999754321        12333333211   


Q ss_pred             -----hHhh---------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHH
Q 044538           82 -----DLLT---------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIV  135 (158)
Q Consensus        82 -----~~~~---------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~  135 (158)
                           +.+.         ....+.++++.+++.+... +++.+|||||||||+||++++.            +||+.++.
T Consensus       344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~  422 (538)
T 3ozx_A          344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERY  422 (538)
T ss_dssp             SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTT-SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred             CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence                 1110         1134567788888876554 6779999999999999998775            79999999


Q ss_pred             HHHHHHhhc----CCeEEEEeecCCC
Q 044538          136 AVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       136 ~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      .+.+.++++    +.|||+||||+++
T Consensus       423 ~i~~~l~~l~~~~g~tvi~vsHdl~~  448 (538)
T 3ozx_A          423 IVAKAIKRVTRERKAVTFIIDHDLSI  448 (538)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            988888654    5799999999764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.94  E-value=1.2e-27  Score=200.69  Aligned_cols=134  Identities=22%  Similarity=0.277  Sum_probs=99.7

Q ss_pred             eeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c---------------------------
Q 044538           21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K---------------------------   70 (158)
Q Consensus        21 ~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~---------------------------   70 (158)
                      ++++|+... .+++++| ++++||+++|+||||||||||+++|++...+   .                           
T Consensus        97 ls~~yg~~~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~  174 (607)
T 3bk7_A           97 CVHRYGVNA-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG  174 (607)
T ss_dssp             EEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHT
T ss_pred             eEEEECCCC-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhh
Confidence            488886532 4799999 9999999999999999999999999864311   0                           


Q ss_pred             -eeeeccccchh--hH---hhH---------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538           71 -LRIGRHSRHLE--DL---LTM---------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------  127 (158)
Q Consensus        71 -~~~~~~~~~~~--~~---~~~---------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------  127 (158)
                       ..+++.++...  ..   .+.         .+++.++++.+|+....+ +++.+|||||||||+||++++.        
T Consensus       175 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~-~~~~~LSGGekQRvaIAraL~~~P~lLlLD  253 (607)
T 3bk7_A          175 EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD-RELHQLSGGELQRVAIAAALLRKAHFYFFD  253 (607)
T ss_dssp             SCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGG-SBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred             hcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhC-CChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence             01111111110  00   011         134678899999987554 6789999999999999998775        


Q ss_pred             ----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                          +||+.++..+.+.|+++   +.|||+||||+++
T Consensus       254 EPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~  290 (607)
T 3bk7_A          254 EPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV  290 (607)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence                79999999888888765   6799999999753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=7.3e-27  Score=195.57  Aligned_cols=141  Identities=20%  Similarity=0.273  Sum_probs=101.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+++.++ +++|+....++|+|+||++++||+++|+||||||||||++++++...+                    +..+
T Consensus       341 ~i~~~~v-~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i  419 (587)
T 3qf4_A          341 SVSFENV-EFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI  419 (587)
T ss_dssp             CEEEEEE-EECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred             cEEEEEE-EEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence            4666666 999976555789999999999999999999999999999999864221                    1124


Q ss_pred             eccccch-------hhHhh------HHHHHHHHHHHcCC-----------CCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGL-----------PGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ++.+|..       .++..      ..+++.+.++..++           +.... ++..+||||||||++||||++.  
T Consensus       420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~~~p  498 (587)
T 3qf4_A          420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKP  498 (587)
T ss_dssp             EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHHTCC
T ss_pred             EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHHHHHHHHHHHHHHcCC
Confidence            4444431       11111      12334444444433           22222 3557999999999999999875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                                +||+.+...+.+.+++.  +.|+|+||||++
T Consensus       499 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~  539 (587)
T 3qf4_A          499 KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP  539 (587)
T ss_dssp             SEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHH
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChH
Confidence                      69999999999988765  479999999974

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=7.1e-27  Score=196.01  Aligned_cols=142  Identities=20%  Similarity=0.267  Sum_probs=99.9

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      .+++.++ +++|+.. .++|+|+||++++||+++|+||||||||||++++++...+                    +..+
T Consensus       354 ~i~~~~v-~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i  431 (598)
T 3qf4_B          354 EIEFKNV-WFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI  431 (598)
T ss_dssp             CEEEEEE-ECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred             eEEEEEE-EEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence            3566665 8888653 3589999999999999999999999999999999864321                    1124


Q ss_pred             eccccch-------hhHhh------HHHHHHHHHHHcCCCCCCCCC----------CCCCCChHHHHHHHHHHHHhh---
Q 044538           74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNHLT----------PIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      ++.+|..       .++..      .++++.++++.+++.+.....          +..+||||||||++||||++.   
T Consensus       432 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~  511 (598)
T 3qf4_B          432 GIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPK  511 (598)
T ss_dssp             EEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCS
T ss_pred             EEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            4444431       11110      113445555555543221111          126899999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||+.+...+.+.+++.  +.|+|+||||++.
T Consensus       512 illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~  552 (598)
T 3qf4_B          512 ILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT  552 (598)
T ss_dssp             EEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTH
T ss_pred             EEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence                     69999999999888765  5799999999863

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.5e-27  Score=198.77  Aligned_cols=134  Identities=23%  Similarity=0.386  Sum_probs=100.4

Q ss_pred             eEEcCCCCCcceeeeeEEeeCC-----CEEEEECCCCCCcchHHHHHHhhhhc-------ceeeeccccch--------h
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMG-----TCVAIVGPNDTGKSPLPNLLAVRRRQ-------KLRIGRHSRHL--------E   81 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G-----~~~~liG~nGsGKSTLl~~i~~~~~~-------~~~~~~~~~~~--------~   81 (158)
                      .+.|+... .+++++||++.+|     |+++|+||||||||||+++|++....       ...+++.++..        .
T Consensus       353 ~~~y~~~~-~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~  431 (608)
T 3j16_B          353 AFSYPSLK-KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVR  431 (608)
T ss_dssp             CCEECCEE-EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHH
T ss_pred             eEEecCcc-cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHH
Confidence            66776432 3688999999999     88999999999999999999975432       12244433321        1


Q ss_pred             hHh--------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHH
Q 044538           82 DLL--------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL  141 (158)
Q Consensus        82 ~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l  141 (158)
                      +.+        ...+.+.++++.+++.+..+ +++.+|||||||||+||++++.            +||+.++..+.+.+
T Consensus       432 e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll  510 (608)
T 3j16_B          432 QLFFKKIRGQFLNPQFQTDVVKPLRIDDIID-QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI  510 (608)
T ss_dssp             HHHHHHCSSTTTSHHHHHHTHHHHTSTTTSS-SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            111        01244667889999987655 6779999999999999988764            79999999888887


Q ss_pred             hhc----CCeEEEEeecCCC
Q 044538          142 DEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       142 ~~~----~~tvi~vtHd~~~  157 (158)
                      +++    +.|||+||||+++
T Consensus       511 ~~l~~~~g~tviivtHdl~~  530 (608)
T 3j16_B          511 RRFILHNKKTAFIVEHDFIM  530 (608)
T ss_dssp             HHHHHHHTCEEEEECSCHHH
T ss_pred             HHHHHhCCCEEEEEeCCHHH
Confidence            654    6799999999764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.2e-25  Score=188.62  Aligned_cols=134  Identities=24%  Similarity=0.379  Sum_probs=97.5

Q ss_pred             eeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcce-ee--------------ec----------
Q 044538           21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKL-RI--------------GR----------   75 (158)
Q Consensus        21 ~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~-~~--------------~~----------   75 (158)
                      ++++|+... ..+++++ .+.+||+++|+||||||||||+++|++...+.. .+              +.          
T Consensus        83 ~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~  160 (608)
T 3j16_B           83 VTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML  160 (608)
T ss_dssp             EEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred             eEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence            488887543 3566666 689999999999999999999999996432110 00              00          


Q ss_pred             --------cccchh--------------hHhh-----HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           76 --------HSRHLE--------------DLLT-----MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        76 --------~~~~~~--------------~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                              .++...              ..+.     ..+++.++++.+++....+ +++.+|||||||||+||++++. 
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGe~Qrv~iAraL~~~  239 (608)
T 3j16_B          161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK-RDIEKLSGGELQRFAIGMSCVQE  239 (608)
T ss_dssp             HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGG-SCTTTCCHHHHHHHHHHHHHHSC
T ss_pred             HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhC-CChHHCCHHHHHHHHHHHHHHhC
Confidence                    000000              0000     1256788999999987654 6789999999999999998765 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                                 +||+.++..+.+.++++   +.|||+||||+++
T Consensus       240 p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~  283 (608)
T 3j16_B          240 ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV  283 (608)
T ss_dssp             CSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHH
T ss_pred             CCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence                       69999999888888765   4799999999754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.92  E-value=7.2e-26  Score=192.01  Aligned_cols=69  Identities=22%  Similarity=0.266  Sum_probs=55.3

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEE
Q 044538           89 AVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVL  150 (158)
Q Consensus        89 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~  150 (158)
                      +..+.+..+++.....++++.+|||||||||+||++++.               +||+.....+++.++++   +.|||+
T Consensus       522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~  601 (670)
T 3ux8_A          522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV  601 (670)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            455678888886544446789999999999999998842               69999999888887654   579999


Q ss_pred             EeecCCC
Q 044538          151 VSHDSRL  157 (158)
Q Consensus       151 vtHd~~~  157 (158)
                      ||||+++
T Consensus       602 vtHd~~~  608 (670)
T 3ux8_A          602 IEHNLDV  608 (670)
T ss_dssp             ECCCHHH
T ss_pred             EeCCHHH
Confidence            9999753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.92  E-value=3.8e-26  Score=193.70  Aligned_cols=64  Identities=22%  Similarity=0.268  Sum_probs=52.6

Q ss_pred             HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhc---CCeEEEEeecC
Q 044538           93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDS  155 (158)
Q Consensus        93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~  155 (158)
                      +++.+|+.+...++++.+|||||||||+||+|++.              +||+..+.++++.++++   +.|||+||||+
T Consensus       185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~  264 (670)
T 3ux8_A          185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  264 (670)
T ss_dssp             HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred             HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            47888997654446789999999999999998864              68999888888877654   57999999997


Q ss_pred             C
Q 044538          156 R  156 (158)
Q Consensus       156 ~  156 (158)
                      +
T Consensus       265 ~  265 (670)
T 3ux8_A          265 D  265 (670)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.92  E-value=2.2e-25  Score=200.27  Aligned_cols=143  Identities=24%  Similarity=0.308  Sum_probs=104.9

Q ss_pred             hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538           14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~   72 (158)
                      -+++.++ +|+|+.. ..++|+|+||+|++||.+||+||||||||||+++|.+....                    +..
T Consensus      1076 ~I~f~nV-sf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A         1076 KVIFKNV-RFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp             CEEEEEE-EECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred             eEEEEEE-EEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence            3666666 9999754 34689999999999999999999999999999999843210                    112


Q ss_pred             eeccccch-------hhHh--------hHHHHHHHHHHHcCCCCCC------CCC----CCCCCChHHHHHHHHHHHHhh
Q 044538           73 IGRHSRHL-------EDLL--------TMEEAVHAKLRKFGLPGHN------HLT----PIANLSGGQKVRVMFTLVSMY  127 (158)
Q Consensus        73 ~~~~~~~~-------~~~~--------~~~~~~~~~l~~~~l~~~~------~~~----~~~~LSgGqkqrv~ia~~~l~  127 (158)
                      +++.+|+.       .++.        ..++++.++++..++.+..      .+.    ...+||||||||+|||||++.
T Consensus      1155 i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr 1234 (1321)
T 4f4c_A         1155 IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR 1234 (1321)
T ss_dssp             EEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS
T ss_pred             eEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh
Confidence            44444432       1111        1245677777777663211      111    235799999999999999875


Q ss_pred             ------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                                  +||+++...+.+.+++.  ++|+|+|+|.+..
T Consensus      1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsT 1278 (1321)
T 4f4c_A         1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNT 1278 (1321)
T ss_dssp             CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSST
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHH
Confidence                        69999999999999875  4799999999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.91  E-value=1e-24  Score=195.51  Aligned_cols=142  Identities=23%  Similarity=0.302  Sum_probs=100.0

Q ss_pred             hhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           15 LQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        15 l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      +++.++ +++|+.. ..++|+|+||+|++||++||+||||||||||+++|.+....                    +..+
T Consensus      1031 i~~~~v-~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A         1031 VQFSGV-VFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp             EEEEEE-EBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred             EEEEEE-EEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce
Confidence            556565 8888753 23589999999999999999999999999999999864211                    1124


Q ss_pred             eccccch-------hhHh--------hHHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh-
Q 044538           74 GRHSRHL-------EDLL--------TMEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~--------~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                      ++.+|+.       .+++        ...+++.+.++..++.+...          .....+||||||||++|||+++. 
T Consensus      1110 ~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~ 1189 (1284)
T 3g5u_A         1110 GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189 (1284)
T ss_dssp             EEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence            4444432       1111        01234444555444322111          12346899999999999999875 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                                 +||+.+...+.+.+++.  +.|+|+||||++.
T Consensus      1190 p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A         1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST 1232 (1284)
T ss_dssp             CSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTG
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHH
Confidence                       69999999999998765  4699999999875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.91  E-value=1.4e-24  Score=195.16  Aligned_cols=142  Identities=23%  Similarity=0.300  Sum_probs=102.8

Q ss_pred             hhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           15 LQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        15 l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      +++.++ +|+|+.. ..++|+|+||+|++|+.++|+||||||||||+++|.+....                    +..+
T Consensus       416 I~~~nv-sF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i  494 (1321)
T 4f4c_A          416 ITVENV-HFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV  494 (1321)
T ss_dssp             EEEEEE-EECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             EEEEEe-eeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence            566666 9999753 35789999999999999999999999999999999864221                    1124


Q ss_pred             eccccch-------hhHh------hHHHHHHHHHHHcCCCCC------CCC----CCCCCCChHHHHHHHHHHHHhh---
Q 044538           74 GRHSRHL-------EDLL------TMEEAVHAKLRKFGLPGH------NHL----TPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~------~~~~~~~~~l~~~~l~~~------~~~----~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      ++.+|..       .++.      ..++++.++++..++.+.      -.+    .....||||||||++||||++.   
T Consensus       495 ~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~  574 (1321)
T 4f4c_A          495 AVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK  574 (1321)
T ss_dssp             EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCS
T ss_pred             cccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCC
Confidence            5555432       1111      113556666666554221      111    1346899999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                               +||+++...+.+.+.+.  +.|+|+|||++..
T Consensus       575 IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~  615 (1321)
T 4f4c_A          575 ILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST  615 (1321)
T ss_dssp             EEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH
Confidence                     69999888888888775  5799999999865

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.91  E-value=1.2e-24  Score=195.01  Aligned_cols=140  Identities=24%  Similarity=0.335  Sum_probs=98.4

Q ss_pred             hhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           15 LQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        15 l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      +++.++ +|+|+.. ..++|+|+||++++||+++|+||||||||||+++|.+....                    +..+
T Consensus       388 i~~~~v-~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i  466 (1284)
T 3g5u_A          388 LEFKNI-HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII  466 (1284)
T ss_dssp             EEEEEE-EECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred             EEEEEE-EEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence            566666 9999754 34689999999999999999999999999999999864211                    1124


Q ss_pred             eccccch-------hhHhh------HHHHHHHHHHHcCC-----------CCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGL-----------PGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ++.+|..       .++..      ..+++.+.++..++           +.... .+..+||||||||++||||++.  
T Consensus       467 ~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~-~~g~~LSgGq~QriaiARal~~~p  545 (1284)
T 3g5u_A          467 GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG-ERGAQLSGGQKQRIAIARALVRNP  545 (1284)
T ss_dssp             EEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCS-SSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred             EEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccc-CCCCccCHHHHHHHHHHHHHhcCC
Confidence            5544432       11111      12334444443332           22222 2456899999999999999875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                                +||+++...+.+.+++.  +.|+|+|||+++
T Consensus       546 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~  586 (1284)
T 3g5u_A          546 KILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS  586 (1284)
T ss_dssp             SEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence                      69999998888888653  579999999974

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.91  E-value=1.1e-24  Score=180.60  Aligned_cols=132  Identities=19%  Similarity=0.223  Sum_probs=94.4

Q ss_pred             eEEcCCCCCcceeeeeEEee-CCCEEEEECCCCCCcchHHHHHHhhhhcc---e--------------------------
Q 044538           22 SFSYPNLQDIRLSNVDMGID-MGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L--------------------------   71 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~-~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~--------------------------   71 (158)
                      ..+|+.+.   ++-..+.+. +||++||+||||||||||+++|++...+.   .                          
T Consensus         6 ~~~~~~~~---f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~   82 (538)
T 3ozx_A            6 IHRYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY   82 (538)
T ss_dssp             EEESSTTS---CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred             ceecCCCc---eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence            67887543   555566664 99999999999999999999999643211   0                          


Q ss_pred             ----eeeccccchh-----------hHhh---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538           72 ----RIGRHSRHLE-----------DLLT---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------  127 (158)
Q Consensus        72 ----~~~~~~~~~~-----------~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------  127 (158)
                          .+....+...           +...   ..+++.++++.+++....+ +++.+|||||||||+||+|++.      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~Qrv~iA~aL~~~p~ill  161 (538)
T 3ozx_A           83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWN-KDANILSGGGLQRLLVAASLLREADVYI  161 (538)
T ss_dssp             TTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTT-SBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred             hcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence                0000000000           0000   0124677899999976554 6789999999999999998775      


Q ss_pred             ------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                            +||+.++.++.+.++++  +.|||+||||+++
T Consensus       162 lDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~  199 (538)
T 3ozx_A          162 FDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIV  199 (538)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHH
T ss_pred             EECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHH
Confidence                  69999999998888776  5799999999754

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.88  E-value=6.7e-23  Score=146.77  Aligned_cols=121  Identities=10%  Similarity=0.018  Sum_probs=74.1

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ceeeeccccch----hhH--hhHHHHHHHHHHHcCCCCCCCC
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLRIGRHSRHL----EDL--LTMEEAVHAKLRKFGLPGHNHL  105 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~~~~~~~~~----~~~--~~~~~~~~~~l~~~~l~~~~~~  105 (158)
                      |+||++++||+++|+||||||||||++++......   ....++..+..    ...  ..............+...... 
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-   79 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVD-   79 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEE-
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEE-
Confidence            68999999999999999999999999965421100   00001111111    000  000111112223345443322 


Q ss_pred             CCCCCCChHHHHHHHHHHHHhh------------CCCHH----------------HHHHHHHHHhh---cCCeEEEEeec
Q 044538          106 TPIANLSGGQKVRVMFTLVSMY------------HLDTQ----------------SIVAVAVTLDE---FAGGVVLVSHD  154 (158)
Q Consensus       106 ~~~~~LSgGqkqrv~ia~~~l~------------~lD~~----------------~~~~l~~~l~~---~~~tvi~vtHd  154 (158)
                       .....|||||||++||+++..            +||+.                ....+.+.+++   .+.|+|+||||
T Consensus        80 -~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~  158 (171)
T 4gp7_A           80 -ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNS  158 (171)
T ss_dssp             -SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECS
T ss_pred             -CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCC
Confidence             235679999999999988764            57777                44677777543   36799999999


Q ss_pred             CCC
Q 044538          155 SRL  157 (158)
Q Consensus       155 ~~~  157 (158)
                      +++
T Consensus       159 ~~~  161 (171)
T 4gp7_A          159 PEE  161 (171)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.87  E-value=1.4e-22  Score=175.86  Aligned_cols=70  Identities=19%  Similarity=0.264  Sum_probs=57.0

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEE
Q 044538           88 EAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVV  149 (158)
Q Consensus        88 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi  149 (158)
                      .+..+.++.+|+......+++.+|||||||||+||++++.               +||+.....+++.|+++   +.|||
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI  862 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI  862 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence            3456788999997544446789999999999999998852               69999999988888654   67999


Q ss_pred             EEeecCCC
Q 044538          150 LVSHDSRL  157 (158)
Q Consensus       150 ~vtHd~~~  157 (158)
                      +||||+++
T Consensus       863 vI~HdL~~  870 (916)
T 3pih_A          863 VIEHNLDV  870 (916)
T ss_dssp             EECCCHHH
T ss_pred             EEeCCHHH
Confidence            99999753

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.84  E-value=1.4e-21  Score=169.46  Aligned_cols=68  Identities=22%  Similarity=0.273  Sum_probs=55.6

Q ss_pred             HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEEE
Q 044538           90 VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVLV  151 (158)
Q Consensus        90 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~v  151 (158)
                      ..++++.+++......+++.+|||||||||+||++++.               +||+.....+++.|+++   +.|||+|
T Consensus       825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi  904 (972)
T 2r6f_A          825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI  904 (972)
T ss_dssp             HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            45788999997633346789999999999999988872               59999999888887654   5799999


Q ss_pred             eecCCC
Q 044538          152 SHDSRL  157 (158)
Q Consensus       152 tHd~~~  157 (158)
                      |||+++
T Consensus       905 sHdl~~  910 (972)
T 2r6f_A          905 EHNLDV  910 (972)
T ss_dssp             CCCHHH
T ss_pred             cCCHHH
Confidence            999753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.84  E-value=1.9e-21  Score=167.74  Aligned_cols=69  Identities=22%  Similarity=0.278  Sum_probs=56.0

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEE
Q 044538           89 AVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVL  150 (158)
Q Consensus        89 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~  150 (158)
                      ++.++++.+++......+++.+|||||||||+||++++.               +||+.....+++.++++   +.|||+
T Consensus       709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv  788 (842)
T 2vf7_A          709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA  788 (842)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            456788999997643346789999999999999988764               48999998888877654   679999


Q ss_pred             EeecCCC
Q 044538          151 VSHDSRL  157 (158)
Q Consensus       151 vtHd~~~  157 (158)
                      ||||+++
T Consensus       789 isHdl~~  795 (842)
T 2vf7_A          789 VEHKMQV  795 (842)
T ss_dssp             ECCCHHH
T ss_pred             EcCCHHH
Confidence            9999764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.84  E-value=9.5e-24  Score=172.14  Aligned_cols=132  Identities=20%  Similarity=0.236  Sum_probs=92.5

Q ss_pred             chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---c-c-ee--------eecccc
Q 044538           12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---Q-K-LR--------IGRHSR   78 (158)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---~-~-~~--------~~~~~~   78 (158)
                      .+|+.+.++ ++.|+        ++||++++|++++|+||||||||||+|+|++...   . . +.        +++.++
T Consensus       116 ~~mi~~~nl-~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq  186 (460)
T 2npi_A          116 HTMKYIYNL-HFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPG  186 (460)
T ss_dssp             CTHHHHHHH-HHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSS
T ss_pred             cchhhhhhh-hehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeecc
Confidence            467887777 77764        7999999999999999999999999999997532   2 2 21        223322


Q ss_pred             ch-----hhHhhHH---------------HHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH--Hhh---------
Q 044538           79 HL-----EDLLTME---------------EAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV--SMY---------  127 (158)
Q Consensus        79 ~~-----~~~~~~~---------------~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~--~l~---------  127 (158)
                      ..     ...++..               +++.++++.+|+.....   +.+||||||||+++|++  ++.         
T Consensus       187 ~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrlalAra~rL~~~p~i~~sGL  263 (460)
T 2npi_A          187 CISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE---NKDLYLECISQLGQVVGQRLHLDPQVRRSGC  263 (460)
T ss_dssp             CCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG---CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred             chhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc---hhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence            21     0000110               12334455666654332   57899999999999988  432         


Q ss_pred             --------CCCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538          128 --------HLDTQSIVAVAVTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~  156 (158)
                              +||+. ...+.+.+++++.|+|+||||.+
T Consensus       264 lLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~  299 (460)
T 2npi_A          264 IVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSET  299 (460)
T ss_dssp             EEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSS
T ss_pred             EEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCc
Confidence                    47777 77788888888889999999976

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.80  E-value=3.2e-20  Score=148.85  Aligned_cols=46  Identities=30%  Similarity=0.475  Sum_probs=40.4

Q ss_pred             CChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538          111 LSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSR  156 (158)
Q Consensus       111 LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~  156 (158)
                      ||||||||++||++++.              +||+.....+.+.|+++.  .+||+||||++
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~  357 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ  357 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence            69999999999987654              688999999999998874  79999999964

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.76  E-value=1.4e-18  Score=137.95  Aligned_cols=51  Identities=29%  Similarity=0.476  Sum_probs=43.6

Q ss_pred             CCCCCCChHHHHHHHHHHHHh------h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          106 TPIANLSGGQKVRVMFTLVSM------Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       106 ~~~~~LSgGqkqrv~ia~~~l------~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      +++.+||||||||++||++++      .            +||+.....+++.++++   +.|||+||||++
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~  346 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE  346 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence            466899999999999998876      1            69999999999888765   479999999975

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.74  E-value=7.1e-19  Score=126.81  Aligned_cols=108  Identities=13%  Similarity=0.023  Sum_probs=65.7

Q ss_pred             EEEEECCCCCCcchHHHHHHhhhhcceeeeccccchhh-Hhh--------HHHHHHHHHHHcCCCC-CCCCCCCCCCChH
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLED-LLT--------MEEAVHAKLRKFGLPG-HNHLTPIANLSGG  114 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG  114 (158)
                      +++|+||||||||||+++|++...-.+ .|+..+.... ...        .....+.++..++... ....+++.+||||
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~-~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG   80 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKRA-IGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF   80 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGE-EEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcC-CCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHH
Confidence            689999999999999999997653111 1111100000 000        0000000011122211 0122456789999


Q ss_pred             HHHHHHHHHH-----Hhh--------------CCCHHHHHHHHHHHhhcCCeEEEEee
Q 044538          115 QKVRVMFTLV-----SMY--------------HLDTQSIVAVAVTLDEFAGGVVLVSH  153 (158)
Q Consensus       115 qkqrv~ia~~-----~l~--------------~lD~~~~~~l~~~l~~~~~tvi~vtH  153 (158)
                      ||||++||++     ++.              ++|+.....+.+.+++.+.|+|++||
T Consensus        81 ~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H  138 (178)
T 1ye8_A           81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP  138 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred             HHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence            9999999986     433              58889999999999887777999996

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.73  E-value=1.1e-19  Score=134.04  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=65.4

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-----------------eeeeccccchhhHh-hHHHHHHH
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-----------------LRIGRHSRHLEDLL-TMEEAVHA   92 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-----------------~~~~~~~~~~~~~~-~~~~~~~~   92 (158)
                      .+|+++    ++|++++|+||||||||||+++|++. ...                 ..+++.++...+.+ ........
T Consensus        14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~   88 (208)
T 3b85_A           14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHD   88 (208)
T ss_dssp             HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHH
T ss_pred             HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHH
Confidence            478885    89999999999999999999999976 321                 11333333321111 10000000


Q ss_pred             HHHHcCCCCCC-CCCCCCCCChHHHHHHHHHHHHhhC-----CCHH---HHHHHHHHHhhc--CCeEEEEeecCCCC
Q 044538           93 KLRKFGLPGHN-HLTPIANLSGGQKVRVMFTLVSMYH-----LDTQ---SIVAVAVTLDEF--AGGVVLVSHDSRLI  158 (158)
Q Consensus        93 ~l~~~~l~~~~-~~~~~~~LSgGqkqrv~ia~~~l~~-----lD~~---~~~~l~~~l~~~--~~tvi~vtHd~~~~  158 (158)
                      .+.  ...... ....... +.|||||++||++++.+     ||..   +...+.+.++++  +.||| +|||++++
T Consensus        89 ~~~--~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l~~g~tii-vtHd~~~~  161 (208)
T 3b85_A           89 ALR--DMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRLGFGSKMV-VTGDITQV  161 (208)
T ss_dssp             HHT--TTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTBCTTCEEE-EEEC----
T ss_pred             HHH--HhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHhcCCCEEE-EECCHHHH
Confidence            010  100000 0000111 33999999999887764     3321   566777777765  46888 99998753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.70  E-value=1.9e-18  Score=136.44  Aligned_cols=139  Identities=12%  Similarity=0.086  Sum_probs=86.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhccee-eeccccc---h-------h-
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLR-IGRHSRH---L-------E-   81 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~-~~~~~~~---~-------~-   81 (158)
                      +++..++ ++.|+.+ ..+++++ |+|.+|++++|+||||||||||+++|++....... +......   .       . 
T Consensus        45 ~i~~~~l-~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~  121 (347)
T 2obl_A           45 PLLRQVI-DQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ  121 (347)
T ss_dssp             STTCCCC-CSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred             Ceeeccc-ceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence            5666666 8888633 3589999 99999999999999999999999999975432211 1100000   0       0 


Q ss_pred             ------------hHhhHHHHHHHH------HHHcCCCCC---CCCCCCCCCChHHHHHHHHHHH---HhhCCCHHHHHHH
Q 044538           82 ------------DLLTMEEAVHAK------LRKFGLPGH---NHLTPIANLSGGQKVRVMFTLV---SMYHLDTQSIVAV  137 (158)
Q Consensus        82 ------------~~~~~~~~~~~~------l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~~---~l~~lD~~~~~~l  137 (158)
                                  ......+++...      .+.+.-...   .....+..||+|| ||+++|..   ...++|+.....+
T Consensus       122 ~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~lal~~p~~t~Gldp~~~~~l  200 (347)
T 2obl_A          122 STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLASGEPDVRGGFPPSVFSSL  200 (347)
T ss_dssp             HHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHHTTCCCCBTTBCHHHHHHH
T ss_pred             hhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHHcCCCCcccCCCHHHHHHH
Confidence                        000011111111      111110000   0002457899999 89999610   0247999999999


Q ss_pred             HHHHhhc-----CC-----eEEEEeecCC
Q 044538          138 AVTLDEF-----AG-----GVVLVSHDSR  156 (158)
Q Consensus       138 ~~~l~~~-----~~-----tvi~vtHd~~  156 (158)
                      .+.+++.     +.     ||+++|||++
T Consensus       201 ~~ller~~~~~~GsiT~~~tVl~~thdl~  229 (347)
T 2obl_A          201 PKLLERAGPAPKGSITAIYTVLLESDNVN  229 (347)
T ss_dssp             HHHHTTCEECSSSEEEEEEEEECCSSCCC
T ss_pred             HHHHHHHhCCCCCCeeeEEEEEEeCCCCC
Confidence            9998764     23     7999999986

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.70  E-value=1.8e-16  Score=123.68  Aligned_cols=51  Identities=24%  Similarity=0.281  Sum_probs=43.2

Q ss_pred             CCCCCCChHHHHHHHHHHHHh----h------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          106 TPIANLSGGQKVRVMFTLVSM----Y------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       106 ~~~~~LSgGqkqrv~ia~~~l----~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                      .++.+||||||||++||++++    .            +||+.....+.+.+++.  +.++|+|||+.+
T Consensus       215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~  283 (322)
T 1e69_A          215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI  283 (322)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT
T ss_pred             CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH
Confidence            456899999999999998764    2            59999999999998876  468999999964

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.70  E-value=5.1e-19  Score=131.16  Aligned_cols=36  Identities=19%  Similarity=0.078  Sum_probs=24.7

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .|+|+||++++|++++|+||||||||||+++|++..
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            489999999999999999999999999999999765

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.68  E-value=3e-19  Score=138.63  Aligned_cols=113  Identities=19%  Similarity=0.153  Sum_probs=75.3

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeeeccccc--hh-----h-Hh-
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRH--LE-----D-LL-   84 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~~--~~-----~-~~-   84 (158)
                      ++.+.++ ++.|+   .++|+++||+|++|++++|+||||||||||+++|++.....+ +++.++.  +.     + .+ 
T Consensus       101 ~i~~~~v-s~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I-~~~v~q~~~lf~~ti~~~ni~  175 (305)
T 2v9p_A          101 FFNYQNI-ELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV-LSFANHKSHFWLASLADTRAA  175 (305)
T ss_dssp             HHHHTTC-CHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE-ECGGGTTSGGGGGGGTTCSCE
T ss_pred             eEEEEEE-EEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE-EEEecCccccccccHHHHhhc
Confidence            4666666 88886   358999999999999999999999999999999997652222 1222211  00     0 00 


Q ss_pred             ---hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------CCCHHHHHHHH
Q 044538           85 ---TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------HLDTQSIVAVA  138 (158)
Q Consensus        85 ---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------~lD~~~~~~l~  138 (158)
                         ...+.+.+.++.+ ++...+   ...||||||||   ||+++.        +||+.+...+.
T Consensus       176 ~~~~~~~~~~~~i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~  233 (305)
T 2v9p_A          176 LVDDATHACWRYFDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYL  233 (305)
T ss_dssp             EEEEECHHHHHHHHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGG
T ss_pred             cCccccHHHHHHHHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHH
Confidence               0012345556654 433222   57899999999   676553        68877766654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.68  E-value=8e-18  Score=136.47  Aligned_cols=140  Identities=11%  Similarity=0.089  Sum_probs=89.3

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc----------------------
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK----------------------   70 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~----------------------   70 (158)
                      +++...++ ++.|..+ ..+++++ |++.+|++++|+||||||||||+++|++.....                      
T Consensus       130 ~~l~~~~v-~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~  206 (438)
T 2dpy_A          130 NPLQRTPI-EHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL  206 (438)
T ss_dssp             CTTTSCCC-CSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred             CceEEecc-ceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence            35666666 8888633 3589999 999999999999999999999999998643211                      


Q ss_pred             ------eeeeccccc---hhhHhhHHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHHH---HhhCCCHHHHH
Q 044538           71 ------LRIGRHSRH---LEDLLTMEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTLV---SMYHLDTQSIV  135 (158)
Q Consensus        71 ------~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~~---~l~~lD~~~~~  135 (158)
                            ..+++.++.   ....++..+.+....+.+.....   .....+..||+|| ||++||..   +..++|+....
T Consensus       207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslAl~~p~~t~glD~~~~~  285 (438)
T 2dpy_A          207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALAIGEPPATKGYPPSVFA  285 (438)
T ss_dssp             HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHHTTCCCCSSSCCTTHHH
T ss_pred             cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHHhCCCcccccCCHHHHH
Confidence                  012222221   11222222322222222221110   0001246899999 99999711   12379999999


Q ss_pred             HHHHHHhhcC------C------eEEEEeecCC
Q 044538          136 AVAVTLDEFA------G------GVVLVSHDSR  156 (158)
Q Consensus       136 ~l~~~l~~~~------~------tvi~vtHd~~  156 (158)
                      .+.+.+.+..      .      ||+++|||++
T Consensus       286 ~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~  318 (438)
T 2dpy_A          286 KLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ  318 (438)
T ss_dssp             HHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred             HHHHHHHHHHhccCCCCcccceeEEEEeCCCcc
Confidence            9999887642      2      8999999985

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.66  E-value=6.6e-18  Score=146.89  Aligned_cols=122  Identities=18%  Similarity=0.185  Sum_probs=74.1

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCC
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPI  108 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  108 (158)
                      ..+++|+||++++|++++|+||||||||||+|++++..... ..| +.+..... ..   .+..++..+++.+... ...
T Consensus       660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~g~~vpa~~~~-i~---~~d~i~~~ig~~d~l~-~~~  733 (918)
T 3thx_B          660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QIGSYVPAEEAT-IG---IVDGIFTRMGAADNIY-KGR  733 (918)
T ss_dssp             SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HHTCCBSSSEEE-EE---CCSEEEEEC-----------
T ss_pred             ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hcCccccchhhh-hh---HHHHHHHhCChHHHHH-HhH
Confidence            46889999999999999999999999999999987432100 000 00000000 00   0011233444444333 345


Q ss_pred             CCCChHHHHHHHHHHHHh-----------hCCCHHHHHHHH-HHHh----hcCCeEEEEeecCCC
Q 044538          109 ANLSGGQKVRVMFTLVSM-----------YHLDTQSIVAVA-VTLD----EFAGGVVLVSHDSRL  157 (158)
Q Consensus       109 ~~LSgGqkqrv~ia~~~l-----------~~lD~~~~~~l~-~~l~----~~~~tvi~vtHd~~~  157 (158)
                      +++|+||+|++.+++++.           .++|+.....+. ..++    +.+.++|++|||+++
T Consensus       734 stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el  798 (918)
T 3thx_B          734 STFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPV  798 (918)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred             HHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence            889999999999976632           279987766554 3332    246899999999764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.63  E-value=1.6e-17  Score=133.61  Aligned_cols=123  Identities=17%  Similarity=0.106  Sum_probs=83.4

Q ss_pred             cceeeeeEEeeCCC--------------------EEEEECCCCCCcchHHHHHHhhhhc---ceee--------eccccc
Q 044538           31 IRLSNVDMGIDMGT--------------------CVAIVGPNDTGKSPLPNLLAVRRRQ---KLRI--------GRHSRH   79 (158)
Q Consensus        31 ~~l~~isl~i~~G~--------------------~~~liG~nGsGKSTLl~~i~~~~~~---~~~~--------~~~~~~   79 (158)
                      .+++++||++++|+                    +++|+||||||||||+|+|++....   ...+        ++.++.
T Consensus        37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~  116 (413)
T 1tq4_A           37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH  116 (413)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC
T ss_pred             HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc
Confidence            47999999999999                    9999999999999999999974211   1000        111111


Q ss_pred             h-------hhH---hhHHHHHHHHHHHcCCCCCCCCCCCCCCChH--HHHHHHHHHHHhh--------------------
Q 044538           80 L-------EDL---LTMEEAVHAKLRKFGLPGHNHLTPIANLSGG--QKVRVMFTLVSMY--------------------  127 (158)
Q Consensus        80 ~-------~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG--qkqrv~ia~~~l~--------------------  127 (158)
                      .       .+.   ......+.++++.+++.+..  ..+. ||+|  |+||++||+++..                    
T Consensus       117 ~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~--~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEP  193 (413)
T 1tq4_A          117 PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD--FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEA  193 (413)
T ss_dssp             SSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS--EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHH
T ss_pred             cccCCeeehHhhcccchHHHHHHHHHHcCCCccC--CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcc
Confidence            0       000   01123567889999986542  2233 9999  9999999988754                    


Q ss_pred             --CCCHHHHHHHHHHHhhc------------CCeEEEEeecCC
Q 044538          128 --HLDTQSIVAVAVTLDEF------------AGGVVLVSHDSR  156 (158)
Q Consensus       128 --~lD~~~~~~l~~~l~~~------------~~tvi~vtHd~~  156 (158)
                        +||+..+..+++.++++            ..+++++||+++
T Consensus       194 tsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~  236 (413)
T 1tq4_A          194 DGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVC  236 (413)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTT
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCC
Confidence              46766666666555443            145888999875

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.62  E-value=2.9e-15  Score=117.69  Aligned_cols=51  Identities=25%  Similarity=0.436  Sum_probs=39.4

Q ss_pred             CCCCCCChHHHHHHHHHHH------Hhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          106 TPIANLSGGQKVRVMFTLV------SMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       106 ~~~~~LSgGqkqrv~ia~~------~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      +++.+||||||||++||++      ++.            +||+..+..+.+.++++   +.+||+||||.+
T Consensus       244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~  315 (339)
T 3qkt_A          244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE  315 (339)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred             CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH
Confidence            4678999999997665533      221            79999999999888664   358999999964

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.62  E-value=1.8e-18  Score=143.06  Aligned_cols=125  Identities=11%  Similarity=0.107  Sum_probs=76.1

Q ss_pred             cceeeeeE-EeeCCCEEEEECCCCCCcchHHHH--HHhhhh-cc--eeeeccccchhhHhh-------HHHHHHH-----
Q 044538           31 IRLSNVDM-GIDMGTCVAIVGPNDTGKSPLPNL--LAVRRR-QK--LRIGRHSRHLEDLLT-------MEEAVHA-----   92 (158)
Q Consensus        31 ~~l~~isl-~i~~G~~~~liG~nGsGKSTLl~~--i~~~~~-~~--~~~~~~~~~~~~~~~-------~~~~~~~-----   92 (158)
                      ++|++++| .+++|++++|+||||||||||+++  +++... ..  +.+..... ......       ..+....     
T Consensus        26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~~~l~  104 (525)
T 1tf7_A           26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDEGKLF  104 (525)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHTTSEE
T ss_pred             hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhccCcEE
Confidence            58999999 999999999999999999999999  455443 11  11111110 000000       0000000     


Q ss_pred             ------------HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh----hCCCHHHHHHHHHHHhh---cCCeEEEEee
Q 044538           93 ------------KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM----YHLDTQSIVAVAVTLDE---FAGGVVLVSH  153 (158)
Q Consensus        93 ------------~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l----~~lD~~~~~~l~~~l~~---~~~tvi~vtH  153 (158)
                                  +++.+++.... ++.+.+|||||+|||.|+....    .++|+..+..+.+.+++   .+.|+|++||
T Consensus       105 ~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH  183 (525)
T 1tf7_A          105 ILDASPDPEGQEVVGGFDLSALI-ERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTE  183 (525)
T ss_dssp             EEECCCCSSCCSCCSSHHHHHHH-HHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             EEecCcccchhhhhcccCHHHHH-HHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence                        00011111110 1234579999999998864432    25788888777776654   4689999999


Q ss_pred             cCCC
Q 044538          154 DSRL  157 (158)
Q Consensus       154 d~~~  157 (158)
                      +++.
T Consensus       184 ~~~~  187 (525)
T 1tf7_A          184 RIEE  187 (525)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            9875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.59  E-value=2.7e-15  Score=124.08  Aligned_cols=115  Identities=10%  Similarity=-0.015  Sum_probs=73.0

Q ss_pred             eEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcce--eeeccccchhhHhhHHHH-------HHHHHHHcCCCCCCCCCC
Q 044538           37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKL--RIGRHSRHLEDLLTMEEA-------VHAKLRKFGLPGHNHLTP  107 (158)
Q Consensus        37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~~~~~~  107 (158)
                      +..+++|++++|+||||||||||++.+++......  .+.+..+.....+  ..+       +.+ +..+|+..... .+
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l--~~~~~~~g~~~~~-~~~~g~~~~~~-~~  350 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQL--LRNAYSWGMDFEE-MERQNLLKIVC-AY  350 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHH--HHHHHTTSCCHHH-HHHTTSEEECC-CC
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHH--HHHHHHcCCCHHH-HHhCCCEEEEE-ec
Confidence            55899999999999999999999999987543221  1122222211111  111       111 22334333333 35


Q ss_pred             CCCCChHHHHHHHHHHHHhh-----------CCCHH-----HHHHHHHH---HhhcCCeEEEEeecC
Q 044538          108 IANLSGGQKVRVMFTLVSMY-----------HLDTQ-----SIVAVAVT---LDEFAGGVVLVSHDS  155 (158)
Q Consensus       108 ~~~LSgGqkqrv~ia~~~l~-----------~lD~~-----~~~~l~~~---l~~~~~tvi~vtHd~  155 (158)
                      +.+|||||+||+++|+++..           +||..     .+..+.+.   +++.+.|+|++|||.
T Consensus       351 p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~  417 (525)
T 1tf7_A          351 PESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD  417 (525)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence            57899999999999877654           35555     55554444   455578999999997

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.58  E-value=4.7e-17  Score=119.36  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=24.7

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .++++|  .++++|++++|+||||||||||+++|++..
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            356777  799999999999999999999999999764

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.58  E-value=1.1e-16  Score=140.80  Aligned_cols=137  Identities=19%  Similarity=0.173  Sum_probs=77.8

Q ss_pred             chhhhhhe-----eeeEEcCCCCCcceeeeeEEeeC-------CCEEEEECCCCCCcchHHHHHHhhhhcceeee-cccc
Q 044538           12 SPMLQLIE-----VISFSYPNLQDIRLSNVDMGIDM-------GTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSR   78 (158)
Q Consensus        12 ~~~l~~~~-----~~~~~~~~~~~~~l~~isl~i~~-------G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~   78 (158)
                      .+++.+.+     + .+.|.+. ..+++|++|++++       |++++|+||||||||||+|.+ +.......+| ++++
T Consensus       748 ~~~l~i~~~rHP~l-~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq  824 (1022)
T 2o8b_B          748 PPFLELKGSRHPCI-TKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPA  824 (1022)
T ss_dssp             CCCEEEEEECCCC-------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEES
T ss_pred             CceEEEEeccccEE-EEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEecc
Confidence            34666666     4 6667332 3589999999987       999999999999999999999 5433222233 3333


Q ss_pred             chhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH-H---HHHHHHh
Q 044538           79 HLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI-V---AVAVTLD  142 (158)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~-~---~l~~~l~  142 (158)
                      ... .++..+   .++..+|+.+... ...+++|+++++ +++|++.+.            ++|+... .   .+++.+.
T Consensus       825 ~~~-~l~v~d---~I~~rig~~d~~~-~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~  898 (1022)
T 2o8b_B          825 EVC-RLTPID---RVFTRLGASDRIM-SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELA  898 (1022)
T ss_dssp             SEE-EECCCS---BEEEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             CcC-CCCHHH---HHHHHcCCHHHHh-hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHH
Confidence            211 011100   1123445544332 344678888776 777666543            6887653 3   3444444


Q ss_pred             hc-CCeEEEEeecCCC
Q 044538          143 EF-AGGVVLVSHDSRL  157 (158)
Q Consensus       143 ~~-~~tvi~vtHd~~~  157 (158)
                      +. +.++|++|||.++
T Consensus       899 ~~~g~~vl~~TH~~el  914 (1022)
T 2o8b_B          899 ETIKCRTLFSTHYHSL  914 (1022)
T ss_dssp             HTSCCEEEEECCCHHH
T ss_pred             hcCCCEEEEEeCCHHH
Confidence            43 6799999999653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.57  E-value=3.6e-17  Score=122.95  Aligned_cols=119  Identities=13%  Similarity=0.090  Sum_probs=60.8

Q ss_pred             CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc------eeeeccccc-hhhHhhH---------------
Q 044538           29 QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK------LRIGRHSRH-LEDLLTM---------------   86 (158)
Q Consensus        29 ~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~------~~~~~~~~~-~~~~~~~---------------   86 (158)
                      ...+|+++||++++|+++||+||||||||||+++|++.....      ..+++.++. +...++.               
T Consensus        11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~   90 (245)
T 2jeo_A           11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDH   90 (245)
T ss_dssp             ------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTS
T ss_pred             CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCC
Confidence            446899999999999999999999999999999998743211      112222211 0000000               


Q ss_pred             -----HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------CCCHHHHHHHHHHHhhcCCeEEEEee
Q 044538           87 -----EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------HLDTQSIVAVAVTLDEFAGGVVLVSH  153 (158)
Q Consensus        87 -----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------~lD~~~~~~l~~~l~~~~~tvi~vtH  153 (158)
                           .+.+.+.++.+  ..... .++..||+||+||+++ ++++.        ++|......+.+   ..+.+|+++||
T Consensus        91 ~~~~~~~~~~~~L~~l--~~~~~-~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~---~~~~~i~v~th  163 (245)
T 2jeo_A           91 PDAFDNDLMHRTLKNI--VEGKT-VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRD---MFHLRLFVDTD  163 (245)
T ss_dssp             GGGBCHHHHHHHHHHH--HTTCC-EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHT---TCSEEEEEECC
T ss_pred             cccccHHHHHHHHHHH--HCCCC-eecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHH---hcCeEEEEECC
Confidence                 12233444433  12222 3567899999999977 33222        344332222222   13568999999


Q ss_pred             c
Q 044538          154 D  154 (158)
Q Consensus       154 d  154 (158)
                      +
T Consensus       164 ~  164 (245)
T 2jeo_A          164 S  164 (245)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.56  E-value=3.6e-16  Score=136.31  Aligned_cols=119  Identities=16%  Similarity=0.091  Sum_probs=68.6

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCC
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPI  108 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  108 (158)
                      ..+++|++|++.+|++++|+|||||||||++|+++...... ..| +.+..... .   ..+..++..+|+.+..    .
T Consensus       649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~a-q~G~~vpa~~~~-~---~~~d~i~~~ig~~d~l----~  719 (934)
T 3thx_A          649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMA-QIGCFVPCESAE-V---SIVDCILARVGAGDSQ----L  719 (934)
T ss_dssp             CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHH-HHTCCBSEEEEE-E---ECCSEEEEECC----------
T ss_pred             eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHH-hcCCcccccccc-c---hHHHHHHHhcCchhhH----H
Confidence            35789999999999999999999999999999985321000 000 11100000 0   0011233444544322    2


Q ss_pred             CCCChHHHHHHHHHHHH--hh------------CCCHHHHHHH----HHHHhh-cCCeEEEEeecCCC
Q 044538          109 ANLSGGQKVRVMFTLVS--MY------------HLDTQSIVAV----AVTLDE-FAGGVVLVSHDSRL  157 (158)
Q Consensus       109 ~~LSgGqkqrv~ia~~~--l~------------~lD~~~~~~l----~~~l~~-~~~tvi~vtHd~~~  157 (158)
                      ..+|+|++++..+|+++  +.            ++|+.....+    ++.+.+ .+.++|++|||.++
T Consensus       720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el  787 (934)
T 3thx_A          720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL  787 (934)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG
T ss_pred             HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH
Confidence            45777777777776554  22            6898766554    344443 46899999999764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.54  E-value=7.4e-16  Score=119.48  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=31.2

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++++||++++|++++|+|||||||||+++.|++.
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.53  E-value=1.1e-15  Score=119.83  Aligned_cols=108  Identities=15%  Similarity=0.093  Sum_probs=67.2

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeeeccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANL  111 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  111 (158)
                      +++++||.+++|++++|+||||||||||+++|++........-.....  +.             +.+...  ...+.-+
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~--~e-------------~~~~~~--~~~i~~~  222 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT--EE-------------IVFKHH--KNYTQLF  222 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS--CC-------------CCCSSC--SSEEEEE
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe--ec-------------cccccc--hhEEEEE
Confidence            688999999999999999999999999999999765432111110000  00             011100  0111111


Q ss_pred             C-hHHHHHHHHHHHHhhCCC-----H---HHHHHHHHHHhhcCCeEEEEeecCC
Q 044538          112 S-GGQKVRVMFTLVSMYHLD-----T---QSIVAVAVTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       112 S-gGqkqrv~ia~~~l~~lD-----~---~~~~~l~~~l~~~~~tvi~vtHd~~  156 (158)
                      + |||+||++||+++..++|     .   ....++++.+..-+.|+|+++|+.+
T Consensus       223 ~ggg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~  276 (330)
T 2pt7_A          223 FGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGS  276 (330)
T ss_dssp             CBTTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             eCCChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccH
Confidence            2 899999999988876544     1   1222333444332347999999875

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.52  E-value=7.1e-15  Score=126.09  Aligned_cols=106  Identities=22%  Similarity=0.174  Sum_probs=72.0

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--cc--------eeeeccccchhhHhhHHHHHHHHHHHcCC
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--QK--------LRIGRHSRHLEDLLTMEEAVHAKLRKFGL   99 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~l   99 (158)
                      ..+++|+||+   |++++|+||||||||||+|++++...  ..        ..+++..+              ++..++.
T Consensus       566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~--------------i~~~~~~  628 (765)
T 1ewq_A          566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG--------------IYTRIGA  628 (765)
T ss_dssp             CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE--------------EEEECCC
T ss_pred             ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH--------------hhccCCH
Confidence            4678999999   99999999999999999999987532  11        11222111              1112222


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHHHH--hh---------------CCCHHHH-HHHHHHHhhcCCeEEEEeecCC
Q 044538          100 PGHNHLTPIANLSGGQKVRVMFTLVS--MY---------------HLDTQSI-VAVAVTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       100 ~~~~~~~~~~~LSgGqkqrv~ia~~~--l~---------------~lD~~~~-~~l~~~l~~~~~tvi~vtHd~~  156 (158)
                      .+.    ....+|+|+++++.+|+++  +.               ++|..+. ..+.+.+.+.+.++|++|||.+
T Consensus       629 ~d~----l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~  699 (765)
T 1ewq_A          629 SDD----LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE  699 (765)
T ss_dssp             ----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred             HHH----HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            221    1235899999999998765  22               3576665 4688888777789999999864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.48  E-value=6.7e-15  Score=116.49  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=30.5

Q ss_pred             eeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++||++++|++++|+||||||||||++.|++.
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence            468999999999999999999999999999864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.46  E-value=9.6e-16  Score=119.35  Aligned_cols=86  Identities=10%  Similarity=-0.059  Sum_probs=57.8

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHhhhhcc---eeeeccccch--hhH----------------hhHHHHHHHHHHHcC
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LRIGRHSRHL--EDL----------------LTMEEAVHAKLRKFG   98 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~~~~~~~~~--~~~----------------~~~~~~~~~~l~~~~   98 (158)
                      +++|+++||+||||||||||+++|++.....   ..+++.++..  .+.                ....+.+.+.++.++
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~  166 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK  166 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence            8999999999999999999999999764321   2233332221  000                001245667777777


Q ss_pred             CCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538           99 LPGHNHLTPIANLSGGQKVRVMFTLVSMY  127 (158)
Q Consensus        99 l~~~~~~~~~~~LSgGqkqrv~ia~~~l~  127 (158)
                       ..... .++.+|||||+||+++|++++.
T Consensus       167 -~~~~~-~~~~~lS~G~~qRv~~a~al~~  193 (312)
T 3aez_A          167 -SGSDY-ACAPVYSHLHYDIIPGAEQVVR  193 (312)
T ss_dssp             -TTCSC-EEEEEEETTTTEEEEEEEEEEC
T ss_pred             -CCccc-CCcccCChhhhhhhhhHHHhcc
Confidence             43332 3457999999999999766554

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.44  E-value=1.1e-15  Score=116.88  Aligned_cols=105  Identities=18%  Similarity=0.110  Sum_probs=61.1

Q ss_pred             EEEEECCCCCCcchHHHHHHhhhhc-----------------ceeeeccccchh--hHh---------------hHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVRRRQ-----------------KLRIGRHSRHLE--DLL---------------TMEEAV   90 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~~~~-----------------~~~~~~~~~~~~--~~~---------------~~~~~~   90 (158)
                      .++|+||||||||||+++|++....                 ...+++.++...  ..+               ..++.+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i   83 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI   83 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence            4799999999999999999864311                 012333322110  000               001223


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------CCCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538           91 HAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------HLDTQSIVAVAVTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus        91 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~  156 (158)
                      .+++.    ... .++.+.+|||||+||+++|++.+.         ++|+.. ..+++.+.+. .++|+|.|..+
T Consensus        84 ~~~~~----~~~-~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~~-~~vI~Vi~K~D  151 (270)
T 3sop_A           84 EKYIN----EQY-EKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSKV-VNIIPVIAKAD  151 (270)
T ss_dssp             HHHHH----HHH-HHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHTT-SEEEEEETTGG
T ss_pred             HHHHH----HHH-HhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHhc-CcEEEEEeccc
Confidence            33322    111 123457899999999999876432         577766 4455566555 78888877543

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.44  E-value=2e-14  Score=123.87  Aligned_cols=112  Identities=17%  Similarity=0.131  Sum_probs=65.7

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------ceeeeccccchhhHhhHHHHHHHHHHHcCC
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------KLRIGRHSRHLEDLLTMEEAVHAKLRKFGL   99 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l   99 (158)
                      ..+++|++|+ ++|++++|+||||||||||+|++++....          ...++...+              ++..++.
T Consensus       595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~--------------i~~~~~~  659 (800)
T 1wb9_A          595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR--------------IFTRVGA  659 (800)
T ss_dssp             CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE--------------EEEEEC-
T ss_pred             ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHH--------------HHhhCCH
Confidence            3579999999 99999999999999999999999864311          011222111              1112222


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHHHHhh-----------CCC---HHHH-HHHHHHHhh-cCCeEEEEeecCCC
Q 044538          100 PGHNHLTPIANLSGGQKVRVMFTLVSMY-----------HLD---TQSI-VAVAVTLDE-FAGGVVLVSHDSRL  157 (158)
Q Consensus       100 ~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------~lD---~~~~-~~l~~~l~~-~~~tvi~vtHd~~~  157 (158)
                      .+... ...+.+|+++++...++..+..           ++|   .... ..+++.+.+ .+.++|++|||.++
T Consensus       660 ~d~l~-~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el  732 (800)
T 1wb9_A          660 ADDLA-SGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL  732 (800)
T ss_dssp             -----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred             HHHHH-hhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHH
Confidence            22211 2335688888776555332111           344   3333 455666655 47899999999764

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.42  E-value=4.2e-13  Score=106.22  Aligned_cols=48  Identities=17%  Similarity=0.091  Sum_probs=41.9

Q ss_pred             CCC-CCChHHHHHHHHHHHHh---------h------------CCCHHHHHHHHHHHhhcCCeEEEEeec
Q 044538          107 PIA-NLSGGQKVRVMFTLVSM---------Y------------HLDTQSIVAVAVTLDEFAGGVVLVSHD  154 (158)
Q Consensus       107 ~~~-~LSgGqkqrv~ia~~~l---------~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd  154 (158)
                      ++. .||||||||++||++++         .            +||+..+..+++.+.+...|+|++||+
T Consensus       261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~  330 (359)
T 2o5v_A          261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL  330 (359)
T ss_dssp             EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC
T ss_pred             chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec
Confidence            445 79999999999998877         2            699999999999998877899999994

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.41  E-value=3e-12  Score=97.57  Aligned_cols=117  Identities=15%  Similarity=0.058  Sum_probs=68.0

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------ceeeeccccc-hhhHh--hH--------HHHHHHHHHH
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------KLRIGRHSRH-LEDLL--TM--------EEAVHAKLRK   96 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------~~~~~~~~~~-~~~~~--~~--------~~~~~~~l~~   96 (158)
                      .+++|++++|+||||||||||++.+++....           ...+.+.... ....+  ..        ......+++.
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~  105 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG  105 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence            4789999999999999999999998853321           1112221110 00110  00        1223345677


Q ss_pred             cCCCCCCCCCCCCCCChHHHHHHHHHHH------------HhhCCCHH---HHHHHHHHH----hhcCCeEEEEeecCCC
Q 044538           97 FGLPGHNHLTPIANLSGGQKVRVMFTLV------------SMYHLDTQ---SIVAVAVTL----DEFAGGVVLVSHDSRL  157 (158)
Q Consensus        97 ~~l~~~~~~~~~~~LSgGqkqrv~ia~~------------~l~~lD~~---~~~~l~~~l----~~~~~tvi~vtHd~~~  157 (158)
                      +.+.+... +++..||+||+|++.- .+            .+..+|..   ....+++.|    ++.+.|||+++|+...
T Consensus       106 l~l~~~~~-~~~~~ls~g~~~~i~~-l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~  183 (279)
T 1nlf_A          106 LLIQPLIG-SLPNIMAPEWFDGLKR-AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG  183 (279)
T ss_dssp             EEECCCTT-SCCCTTSHHHHHHHHH-HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred             eEEeecCC-CCcccCCHHHHHHHHH-hcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence            77765443 4678999999988742 11            00145642   234444444    3457899999998753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.41  E-value=6.7e-13  Score=101.90  Aligned_cols=37  Identities=16%  Similarity=0.291  Sum_probs=34.2

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+|+++++.+++|++++|+||||||||||++.+++..
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999999999999999998654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.38  E-value=2.4e-13  Score=97.69  Aligned_cols=115  Identities=13%  Similarity=0.059  Sum_probs=65.6

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-ee---------------eeccccchhhHhhHHHHHHHHH---HHcC-
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LR---------------IGRHSRHLEDLLTMEEAVHAKL---RKFG-   98 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~l---~~~~-   98 (158)
                      .+++|++++|+||||||||||+++|++..... +.               .++.++......+..+.+....   ..-+ 
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~   84 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY   84 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCC
Confidence            47899999999999999999999998642110 01               1122221111112222221111   1111 


Q ss_pred             ---CCC---------CCC-CCCCCCCChHHHHHHHHHHHHhhC----CCHHHHHHHHHHHhhcC--CeEEEEee
Q 044538           99 ---LPG---------HNH-LTPIANLSGGQKVRVMFTLVSMYH----LDTQSIVAVAVTLDEFA--GGVVLVSH  153 (158)
Q Consensus        99 ---l~~---------~~~-~~~~~~LSgGqkqrv~ia~~~l~~----lD~~~~~~l~~~l~~~~--~tvi~vtH  153 (158)
                         ++.         ... ..++..+|+|++|+++++|++..+    +|+.....+.+.+..+.  ..+++.|+
T Consensus        85 ~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~~~~~~~~l~~~~~~~i~t~  158 (191)
T 1zp6_A           85 FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVS  158 (191)
T ss_dssp             EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCCGGGGGGEEECT
T ss_pred             eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCcccccEEECC
Confidence               010         000 124467999999999998887663    47888888888776543  23445454

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.37  E-value=2.1e-15  Score=110.33  Aligned_cols=112  Identities=12%  Similarity=0.037  Sum_probs=70.0

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHhhhhcceeeeccccc--hh--------h---------HhhHHHHHHHHHHHcCCC
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRH--LE--------D---------LLTMEEAVHAKLRKFGLP  100 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~~--~~--------~---------~~~~~~~~~~~l~~~~l~  100 (158)
                      .++|++++|+||||||||||+++|++.....  +++.++.  +.        .         .....+.+.+.++.+++.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~--i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   80 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGER--VALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRG   80 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGGG--EEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCCC--eEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcC
Confidence            5789999999999999999999999864321  1211111  00        0         001124566777888776


Q ss_pred             CCCCCCCCCCCChHHH----HHHHHHHHHhh------------C-------CCHHHHHHHHHHHhh----cCCeEEEEee
Q 044538          101 GHNHLTPIANLSGGQK----VRVMFTLVSMY------------H-------LDTQSIVAVAVTLDE----FAGGVVLVSH  153 (158)
Q Consensus       101 ~~~~~~~~~~LSgGqk----qrv~ia~~~l~------------~-------lD~~~~~~l~~~l~~----~~~tvi~vtH  153 (158)
                      .... +|+.++|+||+    ||+++|++++.            +       ||+.....+.+.+.+    .+.|++.++|
T Consensus        81 ~~~~-~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~  159 (211)
T 3asz_A           81 LPVE-MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA  159 (211)
T ss_dssp             CCEE-ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             CCcC-CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            6544 46789999974    67776544322            2       565555556665544    2568888888


Q ss_pred             c
Q 044538          154 D  154 (158)
Q Consensus       154 d  154 (158)
                      +
T Consensus       160 ~  160 (211)
T 3asz_A          160 Q  160 (211)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.35  E-value=3.6e-12  Score=98.79  Aligned_cols=114  Identities=19%  Similarity=0.103  Sum_probs=63.0

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhhhhc---ce-----------------------eeeccccch--hhHhhHHHHHHHH
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL-----------------------RIGRHSRHL--EDLLTMEEAVHAK   93 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~-----------------------~~~~~~~~~--~~~~~~~~~~~~~   93 (158)
                      +|++++|+||||||||||++.|++....   ..                       .+++.++..  .+..+..+.+...
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            7999999999999999999999864321   11                       112222211  1111222222221


Q ss_pred             HH-Hc-----CCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------CCCHHHHHHHHHHHh----hcCCeEEEEeecCC
Q 044538           94 LR-KF-----GLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------HLDTQSIVAVAVTLD----EFAGGVVLVSHDSR  156 (158)
Q Consensus        94 l~-~~-----~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------~lD~~~~~~l~~~l~----~~~~tvi~vtHd~~  156 (158)
                      .. ..     +.....+ .....++..++||++||+++..       .||+.+...+++.++    ..+.|+|++||+.+
T Consensus       181 ~~~~~d~~llDt~G~~~-~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~  259 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLH-TKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG  259 (304)
T ss_dssp             HHHTCSEEEECCCCCCT-TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred             HhCCCCEEEecCCCCCC-chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence            11 11     1111111 1112355666999999988665       466554444444433    34679999999854

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.35  E-value=5.1e-13  Score=101.52  Aligned_cols=107  Identities=13%  Similarity=0.070  Sum_probs=64.6

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--eeeeccccchhhHhhHHHHHHHHH--HHcCCCCCCCCC
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--LRIGRHSRHLEDLLTMEEAVHAKL--RKFGLPGHNHLT  106 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l--~~~~l~~~~~~~  106 (158)
                      ++|+++|  +++|++++|+||||||||||++++++.....  ..+-...........  .. ..+.  ..++++.     
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~--~~-~~~v~q~~~gl~~-----   84 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK--HK-KSIVNQREVGEDT-----   84 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC--CS-SSEEEEEEBTTTB-----
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecC--Cc-ceeeeHHHhCCCH-----
Confidence            3789999  9999999999999999999999999754321  111111000000000  00 0000  0122210     


Q ss_pred             CCCCCChHHHHHHHHHHHHhhCC---------CHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538          107 PIANLSGGQKVRVMFTLVSMYHL---------DTQSIVAVAVTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       107 ~~~~LSgGqkqrv~ia~~~l~~l---------D~~~~~~l~~~l~~~~~tvi~vtHd~~  156 (158)
                        ..|      |++||+++..++         |+++...+++.. +.+.+|+++||+.+
T Consensus        85 --~~l------~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~-~~g~~vl~t~H~~~  134 (261)
T 2eyu_A           85 --KSF------ADALRAALREDPDVIFVGEMRDLETVETALRAA-ETGHLVFGTLHTNT  134 (261)
T ss_dssp             --SCH------HHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHH-HTTCEEEEEECCSS
T ss_pred             --HHH------HHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH-ccCCEEEEEeCcch
Confidence              122      899988877643         777776666654 34789999999965

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.30  E-value=5.4e-12  Score=92.74  Aligned_cols=28  Identities=32%  Similarity=0.506  Sum_probs=26.4

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -+++|++++|+||||||||||++++++.
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999999999874

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.30  E-value=2.7e-13  Score=95.75  Aligned_cols=44  Identities=11%  Similarity=0.115  Sum_probs=37.6

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ++.|+.  ..+++++||++++|++++|+||||||||||+++|++..
T Consensus        14 ~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           14 MLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            445542  35789999999999999999999999999999999754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.29  E-value=6.2e-13  Score=96.57  Aligned_cols=47  Identities=26%  Similarity=0.335  Sum_probs=33.6

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++++.++ ++.|+.   .++++  |++.+|..++|+|+||||||||++.+++.
T Consensus         3 ~l~~~~~-~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A            3 NLNYQQT-HFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             ---------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             chhhhhh-hheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4556565 888862   46777  99999999999999999999999988753

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.27  E-value=1.9e-12  Score=95.93  Aligned_cols=119  Identities=14%  Similarity=0.199  Sum_probs=58.4

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-cee--eec---cccc----hhhH-hhHHHHHHHHHHHcCCCCCC
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-KLR--IGR---HSRH----LEDL-LTMEEAVHAKLRKFGLPGHN  103 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-~~~--~~~---~~~~----~~~~-~~~~~~~~~~l~~~~l~~~~  103 (158)
                      .-.-..++|++++|+||||||||||+++|++.... ...  +..   .+..    .... ....+........-.+....
T Consensus         8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~   87 (219)
T 1s96_A            8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA   87 (219)
T ss_dssp             -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred             cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence            33557899999999999999999999999986542 111  110   0000    0000 00011111111110000000


Q ss_pred             CCCCCCCCChHHHHHHHHHH----HHhhCCCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538          104 HLTPIANLSGGQKVRVMFTL----VSMYHLDTQSIVAVAVTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       104 ~~~~~~~LSgGqkqrv~ia~----~~l~~lD~~~~~~l~~~l~~~~~tvi~vtHd~~  156 (158)
                      .  ....+.|-.++++.=+.    .++.++|+.+...+.+.+.+ +.+|+++|||++
T Consensus        88 ~--~~~~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~-~~tI~i~th~~~  141 (219)
T 1s96_A           88 E--VFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPH-ARSIFILPPSKI  141 (219)
T ss_dssp             E--ETTEEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTT-CEEEEEECSSHH
T ss_pred             H--HHhccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccC-CEEEEEECCCHH
Confidence            0  00111121233322111    12347999999999999873 679999999965

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.26  E-value=2.5e-12  Score=101.64  Aligned_cols=91  Identities=16%  Similarity=0.104  Sum_probs=60.0

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-cc---e--------------eeeccccc--hhhH--------
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-QK---L--------------RIGRHSRH--LEDL--------   83 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-~~---~--------------~~~~~~~~--~~~~--------   83 (158)
                      -++++++. .+|++++|+||||||||||+++|++... ..   +              .+++.++.  +.+.        
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l  283 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGL  283 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence            46777775 4799999999999999999999987443 11   0              12222221  0110        


Q ss_pred             --hh---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538           84 --LT---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS  125 (158)
Q Consensus        84 --~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~  125 (158)
                        ..   ..+.+.++++.+++....+ .++.+|| ||+||++||++.
T Consensus       284 ~~l~~~e~~~~~~e~l~~~gl~~f~~-~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          284 WHLEPEQITQGFVEFHDYLGHCKYRD-CKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             CCCCHHHHHHTSGGGGGGTTCSSSTT-CCSSSCT-TCHHHHHHHHTS
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhcC-CCcccCC-HHHHHHHHHhcC
Confidence              01   1233456778888876655 4568999 999999997654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.22  E-value=3.4e-14  Score=109.98  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=21.7

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++.|+.  +.++++++|+|      +|+||||||||||++.|.+.
T Consensus         5 ~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A            5 PNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             ---------------CEEE------EEEEETTSSHHHHHHHHHC-
T ss_pred             cceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCC
Confidence            666654  35899999998      99999999999999998753

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.20  E-value=1.1e-10  Score=85.51  Aligned_cols=120  Identities=12%  Similarity=0.117  Sum_probs=67.9

Q ss_pred             cceeeeeE-EeeCCCEEEEECCCCCCcchHHHHHHhhhhc-ceeeeccccchhhHhhHHHHHHHHHHHcCCCCCCC----
Q 044538           31 IRLSNVDM-GIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-KLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNH----  104 (158)
Q Consensus        31 ~~l~~isl-~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----  104 (158)
                      +.|+++.. .+++|++++|+||||||||||++.+++.... ...+.+.....    . .+.+...+..++......    
T Consensus        10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~   84 (235)
T 2w0m_A           10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE----S-RDSIIRQAKQFNWDFEEYIEKK   84 (235)
T ss_dssp             HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS----C-HHHHHHHHHHTTCCCGGGBTTT
T ss_pred             hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc----C-HHHHHHHHHHhcchHHHHhhCC
Confidence            36888887 8999999999999999999999999854321 11111111110    0 011112222333321100    


Q ss_pred             -------------CCCCCCCChHHHHHHHHHHHHhh--------------CC--CHHHHHHHHHHHh----hcCCeEEEE
Q 044538          105 -------------LTPIANLSGGQKVRVMFTLVSMY--------------HL--DTQSIVAVAVTLD----EFAGGVVLV  151 (158)
Q Consensus       105 -------------~~~~~~LSgGqkqrv~ia~~~l~--------------~l--D~~~~~~l~~~l~----~~~~tvi~v  151 (158)
                                   .......|.++.++...+.+...              .+  |+.....+++.++    +.+.|||++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~  164 (235)
T 2w0m_A           85 LIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYAT  164 (235)
T ss_dssp             EEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             EEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence                         00113458899887766433211              13  7666666665554    346799999


Q ss_pred             eecC
Q 044538          152 SHDS  155 (158)
Q Consensus       152 tHd~  155 (158)
                      ||+.
T Consensus       165 ~h~~  168 (235)
T 2w0m_A          165 SQYA  168 (235)
T ss_dssp             EC--
T ss_pred             eccC
Confidence            9997

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.19  E-value=1.5e-12  Score=104.81  Aligned_cols=34  Identities=21%  Similarity=0.256  Sum_probs=31.9

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -++++|+++.|+.++|+|+||||||||++.+++.
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            4799999999999999999999999999999864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.18  E-value=5.8e-13  Score=96.68  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=23.1

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      |++++|+||||||||||++++++..
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            7899999999999999999999754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.12  E-value=3.3e-11  Score=105.03  Aligned_cols=66  Identities=23%  Similarity=0.280  Sum_probs=53.0

Q ss_pred             HHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhc---CCeEEEEeec
Q 044538           92 AKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEF---AGGVVLVSHD  154 (158)
Q Consensus        92 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd  154 (158)
                      +.+..+|+.....++++.+|||||+|||+||+++..              +||+....++++.++++   +.|||+||||
T Consensus       446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd  525 (916)
T 3pih_A          446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD  525 (916)
T ss_dssp             HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred             HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            456678887554446789999999999999998763              68999988888888765   4699999999


Q ss_pred             CCC
Q 044538          155 SRL  157 (158)
Q Consensus       155 ~~~  157 (158)
                      +++
T Consensus       526 ~~~  528 (916)
T 3pih_A          526 EEV  528 (916)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.12  E-value=2.1e-11  Score=90.36  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHH-hhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA-VRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~-~~~   67 (158)
                      +..+++||++++|++++|+||||||||||+++|+ +..
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3578999999999999999999999999999998 653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.11  E-value=1.6e-10  Score=91.33  Aligned_cols=47  Identities=17%  Similarity=0.150  Sum_probs=34.9

Q ss_pred             eEEcCCCCCcceeeeeE-------EeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           22 SFSYPNLQDIRLSNVDM-------GIDMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl-------~i~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      +++|.....+.|+++.+       ...+|++++|+||||||||||++++++...
T Consensus        95 ~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A           95 VFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             EEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            44443333345666665       678899999999999999999999987543

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.09  E-value=1.1e-10  Score=81.49  Aligned_cols=51  Identities=27%  Similarity=0.455  Sum_probs=41.7

Q ss_pred             CCCCCCChHHHHHHHHH------HHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538          106 TPIANLSGGQKVRVMFT------LVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR  156 (158)
Q Consensus       106 ~~~~~LSgGqkqrv~ia------~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~  156 (158)
                      +++.+||||||||++||      ++++.            +||+.....+.+.+.++   +.|||+||||.+
T Consensus        53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~  124 (148)
T 1f2t_B           53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE  124 (148)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred             CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence            46789999999999886      34332            69999999999988765   469999999974

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.05  E-value=1.2e-10  Score=101.62  Aligned_cols=65  Identities=22%  Similarity=0.260  Sum_probs=52.2

Q ss_pred             HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhh---cCCeEEEEeecC
Q 044538           93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDE---FAGGVVLVSHDS  155 (158)
Q Consensus        93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~---~~~tvi~vtHd~  155 (158)
                      .+..+|+.....++++.+|||||+|||+||+++..              +||+....++++.|++   .+.|||+||||+
T Consensus       487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl  566 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  566 (972)
T ss_dssp             HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            47889997654457789999999999999988653              5888888888877654   467999999997


Q ss_pred             CC
Q 044538          156 RL  157 (158)
Q Consensus       156 ~~  157 (158)
                      ++
T Consensus       567 ~~  568 (972)
T 2r6f_A          567 DT  568 (972)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.05  E-value=7.7e-11  Score=85.25  Aligned_cols=30  Identities=20%  Similarity=0.317  Sum_probs=24.8

Q ss_pred             eEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      |+++++|++++|+||||||||||+++|++.
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            578889999999999999999999999875

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.04  E-value=3.2e-11  Score=97.28  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=34.7

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCE--EEEECCCCCCcchHHHHHHhh
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTC--VAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~--~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++.|++  .+ ++++||++++|++  ++|+||||||||||+++|++.
T Consensus        22 ~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           22 HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            566654  34 9999999999999  999999999999999999864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.04  E-value=1.3e-10  Score=95.02  Aligned_cols=34  Identities=18%  Similarity=0.148  Sum_probs=32.2

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+|+++||+|++ ++++|+||||||||||+++|++
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhc
Confidence            369999999999 9999999999999999999985

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.01  E-value=7.3e-10  Score=80.74  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=30.0

Q ss_pred             ceeeeeE-EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           32 RLSNVDM-GIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        32 ~l~~isl-~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .|+++.. -+++|++++|+||||||||||++.+++
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4666655 689999999999999999999999988

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.00  E-value=2.8e-10  Score=98.47  Aligned_cols=64  Identities=20%  Similarity=0.172  Sum_probs=51.4

Q ss_pred             HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHh---hcCCeEEEEeecC
Q 044538           93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLD---EFAGGVVLVSHDS  155 (158)
Q Consensus        93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~---~~~~tvi~vtHd~  155 (158)
                      .+..+|+.....++++.+|||||+|||+||+++..              +||+....++++.++   +.+.|||+||||+
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl  441 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL  441 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            57889998653457789999999999999988654              688888877777654   4568999999997


Q ss_pred             C
Q 044538          156 R  156 (158)
Q Consensus       156 ~  156 (158)
                      +
T Consensus       442 ~  442 (842)
T 2vf7_A          442 D  442 (842)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.96  E-value=2.6e-10  Score=89.88  Aligned_cols=36  Identities=28%  Similarity=0.408  Sum_probs=31.9

Q ss_pred             ceeee-eEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           32 RLSNV-DMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        32 ~l~~i-sl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .|+++ ++.+++|++++|+||||||||||++.+++..
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46665 7899999999999999999999999998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.95  E-value=4.5e-11  Score=90.23  Aligned_cols=52  Identities=15%  Similarity=0.285  Sum_probs=34.0

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeC---CCEEEEECCCCCCcchHHHHHHh
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDM---GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~---G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++.+.++++++|.. ...+|+++||+|.+   |++++|+|++||||||+.++++.
T Consensus        16 ~~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           16 ALLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            456655433777732 34689999999999   99999999999999999999985

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.92  E-value=2.3e-11  Score=95.06  Aligned_cols=44  Identities=16%  Similarity=0.288  Sum_probs=35.8

Q ss_pred             eEEcCCCCCcceeeeeEEeeCC-------CEEEEECCCCCCcchHHHHHHhhh
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMG-------TCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G-------~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +..|+.  ..+++++++.+.+|       +.++|+||||+|||||++++++..
T Consensus        25 ~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           25 DEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             GGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            444443  34788999999877       899999999999999999998653

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.89  E-value=3.9e-11  Score=94.94  Aligned_cols=35  Identities=17%  Similarity=0.335  Sum_probs=32.4

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ++++||.+++|++++|+||||||||||+++|++..
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            38999999999999999999999999999998643

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.88  E-value=7.7e-10  Score=80.15  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=23.5

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ..+++|+||++.+|++++|+|++||||||+.+.++..
T Consensus        12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            4579999999999999999999999999999999853

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.86  E-value=3e-10  Score=95.49  Aligned_cols=49  Identities=16%  Similarity=0.271  Sum_probs=28.4

Q ss_pred             hhhheeeeEEcCCCCCcceeee----------eEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           15 LQLIEVISFSYPNLQDIRLSNV----------DMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~i----------sl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +.+.++ +..|+....++++.+          +++++.   ++|+||||||||||+++|+|..
T Consensus        11 i~~~~l-~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           11 VAENNL-CSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC
T ss_pred             hhhhhh-hHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCC
Confidence            444444 777754322333333          466664   8999999999999999999753

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.86  E-value=6.6e-11  Score=91.66  Aligned_cols=49  Identities=24%  Similarity=0.199  Sum_probs=40.1

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEe-------------------eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGI-------------------DMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i-------------------~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ++.+.++ ++.|.    ++++++++.+                   .+|+++||+||||||||||+++|++..
T Consensus        37 ~i~~~~v-~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           37 DLSLEEV-AEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             TCCHHHH-HHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccchHhH-HHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3445555 66662    4789999988                   999999999999999999999998754

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=98.84  E-value=6.9e-09  Score=74.11  Aligned_cols=50  Identities=24%  Similarity=0.383  Sum_probs=42.4

Q ss_pred             CCCCCCChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhcC--CeEEEEeecC
Q 044538          106 TPIANLSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDS  155 (158)
Q Consensus       106 ~~~~~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~  155 (158)
                      +++..||||||||++||++++.                +||+.+...+.+.+++..  .++|+|||+.
T Consensus        60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~  127 (173)
T 3kta_B           60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRD  127 (173)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH
T ss_pred             cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence            4568999999999999988752                699999999999998764  5899999984

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.82  E-value=3.5e-08  Score=79.06  Aligned_cols=26  Identities=38%  Similarity=0.589  Sum_probs=24.0

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      -|++|++++|+||||||||||++.++
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence            58999999999999999999999665

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.82  E-value=1.7e-09  Score=76.86  Aligned_cols=31  Identities=32%  Similarity=0.488  Sum_probs=28.8

Q ss_pred             eeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++++++.+| +++|+||||||||||+++|..
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence            6889999999 999999999999999999974

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.82  E-value=1.2e-09  Score=89.58  Aligned_cols=35  Identities=20%  Similarity=0.160  Sum_probs=31.9

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      -+++||++.+|++++|+|+||||||||++.|++..
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            36899999999999999999999999999998643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.80  E-value=6.6e-10  Score=87.15  Aligned_cols=49  Identities=16%  Similarity=0.024  Sum_probs=39.3

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++..++ ++.|..  ..+++++||++.+|++++|+||||||||||++.+++.
T Consensus        30 ie~~~~-~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           30 AESRRA-DHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             HTCSSH-HHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HeeCCc-ccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            333333 555643  2478999999999999999999999999999999853

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.80  E-value=3.9e-09  Score=81.79  Aligned_cols=86  Identities=15%  Similarity=0.071  Sum_probs=54.2

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-ceeeeccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCCh
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-KLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSG  113 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  113 (158)
                      +++++..+|++++|+|||||||||++..+++.... ...+.....+.... ...+.+..+.+.++++.      +...|+
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~-~a~eqL~~~~~~~gl~~------~~~~s~  168 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA-AAIEQLKIWGERVGATV------ISHSEG  168 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH-HHHHHHHHHHHHHTCEE------ECCSTT
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH-HHHHHHHHHHHHcCCcE------EecCCc
Confidence            45677889999999999999999999999865432 11222211111111 11234455666777642      235789


Q ss_pred             HHHHHH---HHHHHHhh
Q 044538          114 GQKVRV---MFTLVSMY  127 (158)
Q Consensus       114 Gqkqrv---~ia~~~l~  127 (158)
                      |+.+++   +++++...
T Consensus       169 ~~~~~v~~~al~~a~~~  185 (306)
T 1vma_A          169 ADPAAVAFDAVAHALAR  185 (306)
T ss_dssp             CCHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            999999   66555443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.79  E-value=1.8e-09  Score=78.32  Aligned_cols=27  Identities=30%  Similarity=0.324  Sum_probs=22.3

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ++|++++|+||||||||||+++|++..
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            579999999999999999999998753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.77  E-value=3e-09  Score=77.60  Aligned_cols=29  Identities=34%  Similarity=0.324  Sum_probs=26.3

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      .++|++++|+||||||||||+++|++...
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            57899999999999999999999997654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.74  E-value=4.1e-09  Score=76.10  Aligned_cols=30  Identities=20%  Similarity=0.380  Sum_probs=25.1

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +++++|++++|+|||||||||++++|++..
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            468899999999999999999999998654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.69  E-value=2.4e-09  Score=84.52  Aligned_cols=36  Identities=31%  Similarity=0.264  Sum_probs=32.4

Q ss_pred             eeeeeEEeeC--CCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           33 LSNVDMGIDM--GTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        33 l~~isl~i~~--G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      .+.|+++|.+  |+.++|+||||||||||+++|++...
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4569999999  99999999999999999999997543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.69  E-value=5.9e-09  Score=83.97  Aligned_cols=46  Identities=17%  Similarity=0.199  Sum_probs=33.9

Q ss_pred             hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .++.+.++ ++.|+.  ..+++++||+|      +|+||||||||||++++++..
T Consensus        10 ~~l~~~~l-~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           10 GYVGFANL-PNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             -----CCC-CCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCC
T ss_pred             CcEEEEec-ceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCC
Confidence            45666666 888864  35899999998      999999999999999998653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.64  E-value=1.2e-08  Score=72.68  Aligned_cols=27  Identities=19%  Similarity=0.460  Sum_probs=24.2

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+|++++|+||||||||||++.|++..
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            368999999999999999999998754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.64  E-value=3.8e-09  Score=76.51  Aligned_cols=37  Identities=19%  Similarity=0.201  Sum_probs=32.9

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+.+..++..++|++++|+|||||||||+.+.++...
T Consensus        13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567888888999999999999999999999998654

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.61  E-value=1.2e-08  Score=83.99  Aligned_cols=50  Identities=28%  Similarity=0.536  Sum_probs=41.4

Q ss_pred             CCCCC-ChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          107 PIANL-SGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       107 ~~~~L-SgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                      ++.+| ||||+|||+||++++.              +||+.....+.+.++++  +.+||+||||++
T Consensus       393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~  459 (517)
T 4ad8_A          393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ  459 (517)
T ss_dssp             BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHH
T ss_pred             cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            45777 9999999999987764              47888888888887665  579999999965

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.60  E-value=1.9e-08  Score=72.74  Aligned_cols=31  Identities=19%  Similarity=0.226  Sum_probs=23.6

Q ss_pred             eeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        36 isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ..++.++|++++|+|||||||||++++|++.
T Consensus        22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             ------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             hhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3466788999999999999999999999864

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.58  E-value=8.1e-09  Score=82.14  Aligned_cols=36  Identities=25%  Similarity=0.190  Sum_probs=33.4

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+++++++.+++|++++|+||||||||||++++++.
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            468899999999999999999999999999999864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.58  E-value=1.3e-07  Score=68.41  Aligned_cols=100  Identities=16%  Similarity=0.104  Sum_probs=50.2

Q ss_pred             EEEEECCCCCCcchHHHHHHhhhhcceeeeccccchhhHh--hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLEDLL--TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT  122 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia  122 (158)
                      +++|+|||||||||+.++++...  ...+.  ........  .....+.++.+.+|...        ..+.|+.+|..++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~lg--~~~id--~d~~~~~~~~~~~~~~~~i~~~~g~~~--------~~~~g~~~r~~l~   71 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDLG--VPLVD--ADVVAREVVAKDSPLLSKIVEHFGAQI--------LTEQGELNRAALR   71 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTTT--CCEEE--HHHHHHHTTCSSCHHHHHHHHHHCTTC--------C------CHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC--Ccccc--hHHHHHHHccCChHHHHHHHHHhCHHH--------hccCccccHHHHH
Confidence            68999999999999999998621  10000  00000000  00123445566666432        1356788888876


Q ss_pred             HHHhhC----------CCHHHHHHHHHHHhhc-CCeEEEEeecCC
Q 044538          123 LVSMYH----------LDTQSIVAVAVTLDEF-AGGVVLVSHDSR  156 (158)
Q Consensus       123 ~~~l~~----------lD~~~~~~l~~~l~~~-~~tvi~vtHd~~  156 (158)
                      ...+.+          +++.....+.+.+... +.++|+.+|.+.
T Consensus        72 ~~~f~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~  116 (206)
T 1jjv_A           72 ERVFNHDEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLI  116 (206)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTT
T ss_pred             HHHhCCHHHHHHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhh
Confidence            554432          2233344444445433 346777788653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.57  E-value=4.6e-09  Score=86.58  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=32.9

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+++++++.+++|+.++|+||||||||||++++++.
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            357889999999999999999999999999999864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.56  E-value=1.5e-08  Score=71.89  Aligned_cols=31  Identities=19%  Similarity=0.259  Sum_probs=27.8

Q ss_pred             eEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +|++.+|+.++|+||||||||||++.+++..
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            5677889999999999999999999998755

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.55  E-value=1.1e-08  Score=77.95  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=32.5

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      .+++++++++++|  ++|+||||||||||++++++...
T Consensus        34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence            4789999999999  89999999999999999997543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.53  E-value=4.1e-08  Score=71.59  Aligned_cols=27  Identities=19%  Similarity=0.402  Sum_probs=24.4

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ++|++++|+||||||||||++.|+...
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            589999999999999999999998643

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.53  E-value=2.6e-08  Score=71.14  Aligned_cols=23  Identities=35%  Similarity=0.384  Sum_probs=21.6

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      |++++|+||||||||||+++|+.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            67999999999999999999985

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.52  E-value=1.9e-08  Score=79.88  Aligned_cols=35  Identities=14%  Similarity=0.137  Sum_probs=29.3

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      +|++++  +++|++++|+||||||||||++++++...
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            355544  78999999999999999999999987543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.51  E-value=4.9e-08  Score=67.85  Aligned_cols=31  Identities=32%  Similarity=0.462  Sum_probs=25.5

Q ss_pred             eeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.++++.+| +.+|+|||||||||++++|..
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            4556666655 899999999999999999873

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.48  E-value=5.4e-08  Score=76.05  Aligned_cols=29  Identities=24%  Similarity=0.190  Sum_probs=25.8

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ..++|++++|+|||||||||+++.|++..
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            44789999999999999999999998643

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.45  E-value=4.8e-08  Score=77.12  Aligned_cols=28  Identities=29%  Similarity=0.417  Sum_probs=25.0

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -+++|+++.|.||||||||||+..++..
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~   84 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAE   84 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999888753

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.44  E-value=9e-08  Score=69.67  Aligned_cols=31  Identities=16%  Similarity=0.351  Sum_probs=25.1

Q ss_pred             eEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      |+...+|++++|+||||||||||++.|....
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            4556689999999999999999999998543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.44  E-value=8.7e-08  Score=71.40  Aligned_cols=23  Identities=26%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             CCCEEEEECCCCCCcchHHHHHH
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++++++|+||||||||||+++|+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999999998

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.43  E-value=3.2e-08  Score=73.20  Aligned_cols=31  Identities=19%  Similarity=0.029  Sum_probs=27.5

Q ss_pred             eeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        36 isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -+...++|++++|.|+|||||||++++|++.
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            4556689999999999999999999999875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.43  E-value=1.1e-07  Score=66.07  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=24.7

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      +|+.++|+||||||||||++++++...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            899999999999999999999987553

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.43  E-value=3.2e-08  Score=73.94  Aligned_cols=42  Identities=29%  Similarity=0.358  Sum_probs=34.5

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ...|..  ..+++++++++++|  ++|+||||||||||++++++..
T Consensus        32 ~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           32 VEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             HHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence            444533  24689999999999  8999999999999999998654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.42  E-value=3.7e-08  Score=79.37  Aligned_cols=33  Identities=15%  Similarity=0.192  Sum_probs=27.7

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +|+++ + ..+|++++|+||||||||||++++++.
T Consensus       158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence            45555 4 378999999999999999999999853

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.41  E-value=1.1e-07  Score=71.48  Aligned_cols=24  Identities=29%  Similarity=0.552  Sum_probs=23.2

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHH
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++|++++|+|||||||||++++++
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            789999999999999999999998

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.41  E-value=4.6e-08  Score=75.42  Aligned_cols=29  Identities=24%  Similarity=0.245  Sum_probs=26.4

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      |++.+|++++|+||||||||||+++|++.
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccc
Confidence            56778999999999999999999999864

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.41  E-value=1e-07  Score=67.21  Aligned_cols=26  Identities=19%  Similarity=0.277  Sum_probs=23.5

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+|++++|+|||||||||+.+.++..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            46899999999999999999999854

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.40  E-value=5.6e-09  Score=77.65  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=25.8

Q ss_pred             eEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +|+|.+ ++++|+||||||||||+++|++.
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhcc
Confidence            677777 89999999999999999999854

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.40  E-value=4.2e-08  Score=74.39  Aligned_cols=35  Identities=31%  Similarity=0.479  Sum_probs=31.5

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++++++++++|  ++|+||||||||||++++++..
T Consensus        63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence            4688999999999  8999999999999999998654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.40  E-value=1.7e-07  Score=69.08  Aligned_cols=28  Identities=36%  Similarity=0.570  Sum_probs=25.8

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -+++|++++|+||||||||||++.+++.
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999999999999873

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.39  E-value=1.6e-07  Score=75.52  Aligned_cols=48  Identities=21%  Similarity=0.324  Sum_probs=40.7

Q ss_pred             CCCCChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhcC---CeEEEEeecC
Q 044538          108 IANLSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEFA---GGVVLVSHDS  155 (158)
Q Consensus       108 ~~~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~~---~tvi~vtHd~  155 (158)
                      +..||||||||++||++++.                +||+.....+.+.+++..   .++|+|||+.
T Consensus       331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~  397 (430)
T 1w1w_A          331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN  397 (430)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH
Confidence            34699999999999988761                699999999999998763   5899999985

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.38  E-value=7.4e-08  Score=74.32  Aligned_cols=27  Identities=26%  Similarity=0.394  Sum_probs=24.7

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++.+|++++|+||||||||||+|+|+
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999999997

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.38  E-value=1.3e-07  Score=66.39  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=22.7

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .|++++|+|||||||||+.++++..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999999864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.38  E-value=2.6e-06  Score=65.44  Aligned_cols=40  Identities=15%  Similarity=0.014  Sum_probs=32.6

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+.|+..    .++++|+  +|++++++|+||+||||++..+++..
T Consensus        83 ~~~~~~~----~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           83 KEALGGE----ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             HHHTTSS----CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             HHHHCCC----CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5666432    1678888  99999999999999999999998754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.36  E-value=1e-06  Score=68.44  Aligned_cols=30  Identities=13%  Similarity=0.266  Sum_probs=24.7

Q ss_pred             CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          128 HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       128 ~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      .+|......+.+.+.+..  .++|++||+.+.
T Consensus       145 ~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~  176 (354)
T 1sxj_E          145 SLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP  176 (354)
T ss_dssp             SSCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred             ccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence            588999999999998763  579999998753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.36  E-value=2.4e-08  Score=77.34  Aligned_cols=28  Identities=21%  Similarity=0.243  Sum_probs=26.1

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++.+|++++|+||||||||||+|+|++
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence            6788999999999999999999999975

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.35  E-value=8.4e-07  Score=71.37  Aligned_cols=28  Identities=29%  Similarity=0.616  Sum_probs=25.6

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++.+|++++|+||||||||||+++|++
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence            6678899999999999999999999974

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.31  E-value=7.1e-08  Score=75.17  Aligned_cols=46  Identities=20%  Similarity=0.192  Sum_probs=36.2

Q ss_pred             eeeEEcCCCCCcceeeeeEEeeCCC------EEEEECCCCCCcchHHHHHHhhh
Q 044538           20 VISFSYPNLQDIRLSNVDMGIDMGT------CVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        20 ~~~~~~~~~~~~~l~~isl~i~~G~------~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ++++.|+..  ..+.+++..+.+++      ++||+||||||||||+++|.+..
T Consensus        65 ll~~~~~~~--~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           65 LLSFYVTAR--QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHhhcch--HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            334555443  36788888888887      99999999999999999998653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.30  E-value=3.2e-07  Score=66.78  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=24.8

Q ss_pred             eeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+.++++.+ .+.+|+|||||||||++.+|.
T Consensus        15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence            345666666 489999999999999999886

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.29  E-value=2.5e-07  Score=66.93  Aligned_cols=29  Identities=24%  Similarity=0.244  Sum_probs=25.4

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ...+|++++|+|+|||||||+++.++...
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999999998643

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.28  E-value=2.1e-07  Score=72.42  Aligned_cols=33  Identities=24%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             eeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++++|++.+|++++++|+||+||||++..|++.
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999999999999988753

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.28  E-value=2.4e-07  Score=67.05  Aligned_cols=32  Identities=19%  Similarity=0.188  Sum_probs=27.1

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++--++++|.+++|+|++||||||+.+.|+..
T Consensus        13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34456788999999999999999999999864

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=98.27  E-value=2.5e-06  Score=67.44  Aligned_cols=51  Identities=22%  Similarity=0.365  Sum_probs=40.0

Q ss_pred             CCCCCCChHHHHHHHHH------HHHhh-------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538          106 TPIANLSGGQKVRVMFT------LVSMY-------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSR  156 (158)
Q Consensus       106 ~~~~~LSgGqkqrv~ia------~~~l~-------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~  156 (158)
                      .++..|||||+||+++|      +++..             +||+.....+.+.+.+..  .+||+||||.+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~  347 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE  347 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH
Confidence            35678999999999664      33221             599999999999998764  48999999964

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.26  E-value=3.2e-06  Score=66.25  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-cceeeeccccchhhHhhHHHHHHHHHHH-cCCCCCCCCCCCC
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-QKLRIGRHSRHLEDLLTMEEAVHAKLRK-FGLPGHNHLTPIA  109 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~  109 (158)
                      .|+.+.--+.+|+++.|.|++|+|||||+.-++.... ....+.++.-    .++..+...+++.. .+++.... +. .
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl----Ems~~ql~~Rlls~~~~v~~~~l-~~-g  108 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL----EMSAEQLALRALSDLTSINMHDL-ES-G  108 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES----SSCHHHHHHHHHHHHHCCCHHHH-HH-T
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC----CCCHHHHHHHHHHHhhCCCHHHH-hc-C
Confidence            4666666799999999999999999999877764322 1122222211    11222323333322 23322111 12 5


Q ss_pred             CCChHHHHHHHHHHHHhh----------CCCHHHHHHHHHHHh-hc-CCeEEEEee
Q 044538          110 NLSGGQKVRVMFTLVSMY----------HLDTQSIVAVAVTLD-EF-AGGVVLVSH  153 (158)
Q Consensus       110 ~LSgGqkqrv~ia~~~l~----------~lD~~~~~~l~~~l~-~~-~~tvi~vtH  153 (158)
                      .||.++.+|+..|...+.          .+.........+.+. +. +..+|+|-|
T Consensus       109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            799999999998765543          234444444444343 34 467787765

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.26  E-value=4.1e-07  Score=64.88  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=26.2

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++|++..+|..++|+|++||||||+.+.++..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999999999999754

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.25  E-value=3.6e-07  Score=72.85  Aligned_cols=49  Identities=22%  Similarity=0.283  Sum_probs=41.8

Q ss_pred             hhhheeeeEEcCCCCCccee--------------eeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           15 LQLIEVISFSYPNLQDIRLS--------------NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~--------------~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+.++ ++.|+..+ ..++              |+++.+.+|+.++|+||+|||||||++.|+.
T Consensus       134 i~Fe~l-tp~yP~er-~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar  196 (422)
T 3ice_A          134 ILFENL-TPLHANSR-LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ  196 (422)
T ss_dssp             CCTTTS-CEESCCSB-CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred             ceeccc-cccCCCCc-cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence            445566 88998754 4688              8999999999999999999999999998874

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.23  E-value=4.7e-07  Score=67.11  Aligned_cols=35  Identities=23%  Similarity=0.397  Sum_probs=25.2

Q ss_pred             eeeeeEEee---CCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           33 LSNVDMGID---MGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        33 l~~isl~i~---~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      |.++|+.+.   +|.+++|.|++||||||+++.++...
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            667777776   99999999999999999999998543

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.18  E-value=2.2e-07  Score=76.52  Aligned_cols=33  Identities=21%  Similarity=0.455  Sum_probs=30.1

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+++++|++.+| +.+|+|+||||||||+.+|..
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~   82 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGL   82 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence            477899999999 999999999999999999863

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.16  E-value=8.1e-07  Score=64.26  Aligned_cols=29  Identities=17%  Similarity=0.242  Sum_probs=24.5

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -...+|.+++|+|||||||||+.+.|+..
T Consensus         7 ~~~~~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A            7 HHMARIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             --CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence            35678999999999999999999998754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.16  E-value=9.5e-07  Score=64.50  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+++|+||+||||||+.++++.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999974

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.13  E-value=1.1e-06  Score=62.20  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=23.1

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+|++++|+|++||||||+.+.++..
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999999864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.11  E-value=5.4e-07  Score=74.89  Aligned_cols=30  Identities=33%  Similarity=0.331  Sum_probs=27.0

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      .+.+|++++|+|+||||||||+++|++...
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            578999999999999999999999987543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.10  E-value=1e-06  Score=68.28  Aligned_cols=46  Identities=13%  Similarity=0.056  Sum_probs=31.1

Q ss_pred             CCChHHHHHHHHHHHHhhCCCHHHH-HHHHHHHhhc--CCeEEEEeecC
Q 044538          110 NLSGGQKVRVMFTLVSMYHLDTQSI-VAVAVTLDEF--AGGVVLVSHDS  155 (158)
Q Consensus       110 ~LSgGqkqrv~ia~~~l~~lD~~~~-~~l~~~l~~~--~~tvi~vtHd~  155 (158)
                      ++|+||+||+..+++++.+.|.... ..+.+.+++.  +.+|+++||+.
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~de~~~l~~~l~~l~~~~~ii~~sh~~  189 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARAPVYTVTHGD  189 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTCSCTHHHHHHHHHHCSSSCEEECCSSC
T ss_pred             hchHHHHHHHhCCEEEEECcccCCHHHHHHHHHHHhCCCCeEEEecccC
Confidence            7899999999776555565552211 4555555544  46899999964

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.09  E-value=1.1e-06  Score=70.14  Aligned_cols=27  Identities=22%  Similarity=0.188  Sum_probs=25.1

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.+|..++|+|+||||||||+++|++
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            557899999999999999999999987

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.09  E-value=5.4e-07  Score=64.06  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++++|+|+||||||||++.|++.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999864

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.08  E-value=1.4e-05  Score=64.66  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=31.1

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .|+++..-+++|+++.|.|++|+|||||+..++..
T Consensus       192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~  226 (454)
T 2r6a_A          192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQN  226 (454)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            57888888999999999999999999998887753

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.08  E-value=4.8e-07  Score=70.81  Aligned_cols=36  Identities=14%  Similarity=0.107  Sum_probs=32.6

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+++++++++.+|.+++|+|+||+|||||++.+++.
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.08  E-value=5.4e-05  Score=59.09  Aligned_cols=107  Identities=17%  Similarity=0.177  Sum_probs=59.3

Q ss_pred             CCC--EEEEECCCCCCcchHHHHHHhhhhcc--eeeeccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHH
Q 044538           42 MGT--CVAIVGPNDTGKSPLPNLLAVRRRQK--LRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKV  117 (158)
Q Consensus        42 ~G~--~~~liG~nGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  117 (158)
                      .+.  .+.|.||+|+|||||++.++......  ..+.+...  ....+.......++..++...     +....+.++..
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~  113 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING--FIYRNFTAIIGEIARSLNIPF-----PRRGLSRDEFL  113 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET--TTCCSHHHHHHHHHHHTTCCC-----CSSCCCHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC--ccCCCHHHHHHHHHHHhCccC-----CCCCCCHHHHH
Confidence            346  89999999999999999998654322  22222111  111122233445566665431     11234444433


Q ss_pred             HHHHHHHH------h------hCCCHHHHHHHHHHHhh------cCCeEEEEeecC
Q 044538          118 RVMFTLVS------M------YHLDTQSIVAVAVTLDE------FAGGVVLVSHDS  155 (158)
Q Consensus       118 rv~ia~~~------l------~~lD~~~~~~l~~~l~~------~~~tvi~vtHd~  155 (158)
                      ........      +      ..+|......+.+.+.+      .+..+|++||+.
T Consensus       114 ~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~  169 (389)
T 1fnn_A          114 ALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND  169 (389)
T ss_dssp             HHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred             HHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence            32221110      0      14677878888888754      245789999976

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.05  E-value=1.7e-06  Score=61.77  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+||||||||++.+++.
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5799999999999999999864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.04  E-value=2.4e-06  Score=62.84  Aligned_cols=33  Identities=21%  Similarity=0.318  Sum_probs=27.5

Q ss_pred             ceeee-eEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           32 RLSNV-DMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        32 ~l~~i-sl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      .|+.+ .--+++|++++|.||||||||||+..++
T Consensus        11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            46665 6678999999999999999999966554

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.03  E-value=1.8e-06  Score=62.08  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++|+|+|||||||+.+.++.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999986

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.02  E-value=2.4e-06  Score=61.20  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+||||||||++.+++.
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4799999999999999999864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.01  E-value=9.7e-06  Score=62.69  Aligned_cols=116  Identities=12%  Similarity=0.122  Sum_probs=64.6

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-ceeeeccccchhhHhhHHHHHHHHHHH-cCCCCCCCCCCCC
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-KLRIGRHSRHLEDLLTMEEAVHAKLRK-FGLPGHNHLTPIA  109 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~  109 (158)
                      .|+++.--+++|+++.|.|++|+|||||+.-++..... ...+.+..-.    .+..+...+++.. .+++.... +. .
T Consensus        57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE----~s~~~l~~R~~~~~~~i~~~~l-~~-~  130 (315)
T 3bh0_A           57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE----MGKKENIKRLIVTAGSINAQKI-KA-A  130 (315)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS----SCHHHHHHHHHHHHTTCCHHHH-HS-C
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC----CCHHHHHHHHHHHHcCCCHHHH-hc-C
Confidence            47777766999999999999999999998777643211 1122221111    1222323333322 23321111 11 2


Q ss_pred             C--CChHHHHHHHHHHHHhh----------CCCHHHHHHHHHH-HhhcCCe--EEEEee
Q 044538          110 N--LSGGQKVRVMFTLVSMY----------HLDTQSIVAVAVT-LDEFAGG--VVLVSH  153 (158)
Q Consensus       110 ~--LSgGqkqrv~ia~~~l~----------~lD~~~~~~l~~~-l~~~~~t--vi~vtH  153 (158)
                      .  ||.++++|+..|...+.          .++.......++. .++.+..  +|+|-|
T Consensus       131 ~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~  189 (315)
T 3bh0_A          131 RRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDY  189 (315)
T ss_dssp             HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            3  99999999988765443          1334443333333 3344556  888765

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.99  E-value=2.7e-06  Score=65.45  Aligned_cols=28  Identities=18%  Similarity=0.202  Sum_probs=24.8

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      .+|++++++|||||||||++..+++...
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999986543

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.98  E-value=3.7e-06  Score=66.39  Aligned_cols=31  Identities=29%  Similarity=0.389  Sum_probs=27.3

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++..+++.+ .+.+|+|||||||||++..|.
T Consensus        16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred             ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence            5677888877 489999999999999999986

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.96  E-value=3.3e-06  Score=64.76  Aligned_cols=27  Identities=19%  Similarity=0.161  Sum_probs=23.5

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .++.+++|.||+|||||||.+.|....
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999987543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.93  E-value=3.4e-06  Score=59.64  Aligned_cols=25  Identities=36%  Similarity=0.606  Sum_probs=21.9

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+|.+++|+|++||||||+.+.++.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999999999999974

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.91  E-value=4e-06  Score=59.51  Aligned_cols=29  Identities=28%  Similarity=0.342  Sum_probs=25.0

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +...+|.+++|+|++||||||+.+.++..
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            44467899999999999999999999754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.91  E-value=4.7e-06  Score=59.92  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=21.4

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ..+++|+|++||||||+.+.|+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.90  E-value=2.2e-06  Score=71.14  Aligned_cols=34  Identities=21%  Similarity=0.458  Sum_probs=30.1

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++.++++++ +|+.++|+||||||||||+++++..
T Consensus        98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A           98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred             HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            467778888 8999999999999999999999854

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.90  E-value=1.4e-06  Score=68.67  Aligned_cols=35  Identities=29%  Similarity=0.315  Sum_probs=31.1

Q ss_pred             ceeeeeEEeeCCCE--EEEECCCCCCcchHHHHHHhh
Q 044538           32 RLSNVDMGIDMGTC--VAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        32 ~l~~isl~i~~G~~--~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++.+++.+++|++  ++|+|++||||||+.++++..
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            56788888999999  999999999999999998753

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.89  E-value=1.3e-06  Score=73.16  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=34.3

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+++++++.+.+|+.++|+||||||||||+++|++..
T Consensus        48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l   84 (604)
T 3k1j_A           48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL   84 (604)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred             hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            4789999999999999999999999999999998754

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.87  E-value=5.3e-06  Score=60.21  Aligned_cols=30  Identities=23%  Similarity=0.273  Sum_probs=26.2

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +.+.+|.+++|+|++||||||+.+.++...
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            556789999999999999999999997643

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.86  E-value=3e-06  Score=69.67  Aligned_cols=35  Identities=31%  Similarity=0.479  Sum_probs=31.0

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ..++++++++++|  +.|+||||+|||||++++++..
T Consensus        54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred             hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh
Confidence            3678899999999  8999999999999999998643

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.86  E-value=7.3e-06  Score=60.54  Aligned_cols=26  Identities=31%  Similarity=0.427  Sum_probs=22.7

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -.+|.+++|+|++||||||+.+.++.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999999874

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.86  E-value=5.6e-06  Score=58.05  Aligned_cols=25  Identities=48%  Similarity=0.555  Sum_probs=22.0

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +|..++|+|++|+|||||++.+++.
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5778999999999999999999864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.84  E-value=3.7e-06  Score=66.03  Aligned_cols=107  Identities=16%  Similarity=0.132  Sum_probs=57.3

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhhhhcceeeecccc---ch-hhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHH
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSR---HL-EDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKV  117 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  117 (158)
                      ..-.++++|+||+|||||++.+++....   .+..+.   .. ...... .  ...+..++.++... .+...+|+|++|
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~---~~~~~~~t~~~~~~~~~~-~--~~~~~l~Dt~G~~~-~~~~~~~~~~~~  238 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPE---IASYPFTTRGINVGQFED-G--YFRYQIIDTPGLLD-RPISERNEIEKQ  238 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCE---EECCTTCSSCEEEEEEEE-T--TEEEEEEECTTTSS-SCSTTSCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc---cCCCCCeeeceeEEEEEe-c--CceEEEEeCCCccc-cchhhhhHHHHH
Confidence            3457899999999999999999864311   110000   00 000000 0  00112223333322 355789999998


Q ss_pred             HHHHHHHHhh-------------CCCHHHHHHHHHHHhhc--CCeEEEEe--ecCC
Q 044538          118 RVMFTLVSMY-------------HLDTQSIVAVAVTLDEF--AGGVVLVS--HDSR  156 (158)
Q Consensus       118 rv~ia~~~l~-------------~lD~~~~~~l~~~l~~~--~~tvi~vt--Hd~~  156 (158)
                      ++. +.+...             ++|......+++.+.+.  +..+|+|.  ||+.
T Consensus       239 ~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~  293 (357)
T 2e87_A          239 AIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA  293 (357)
T ss_dssp             HHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred             HHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence            775 222111             23666666666666542  46777777  7763

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.84  E-value=7.1e-06  Score=58.36  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++++++..++. .++++|++|+|||||++.+..
T Consensus        13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            578999998887 569999999999999999875

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.83  E-value=7.7e-06  Score=64.23  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=23.0

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++.+++|+|++|||||||++.+.+.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            35789999999999999999999863

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.83  E-value=4.7e-06  Score=64.10  Aligned_cols=25  Identities=40%  Similarity=0.432  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++.+++|+|++|+|||||++.+.+.
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3448999999999999999999864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.82  E-value=8.8e-06  Score=56.53  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++|+|++||||||+.+.++..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999743

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.81  E-value=6.6e-06  Score=64.62  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=26.6

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+|++++++++   .++|+|++|||||||++.+.+.
T Consensus        25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred             cccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence            47899999999   8999999999999999999974

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.81  E-value=1.1e-05  Score=56.56  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .|.++.|+|++||||||+.+.++..
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3578999999999999999999753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.79  E-value=1.9e-06  Score=61.87  Aligned_cols=42  Identities=19%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++.|++.. .+++++|+..++.+ ++++|++|+|||||++.+.+
T Consensus         6 ~~~~~~~~-~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            6 DWIYSGFS-SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             -------C-HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHHH-HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence            45566543 47889999888875 68999999999999998864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.78  E-value=2.4e-06  Score=66.41  Aligned_cols=35  Identities=29%  Similarity=0.314  Sum_probs=31.9

Q ss_pred             cceeeeeEEeeCCCE--EEEECCCCCCcchHHHHHHh
Q 044538           31 IRLSNVDMGIDMGTC--VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        31 ~~l~~isl~i~~G~~--~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+++.++..+..|++  +.+.||+|+||||++++++.
T Consensus        32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence            467889999999998  99999999999999999874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.78  E-value=8.2e-06  Score=60.82  Aligned_cols=34  Identities=35%  Similarity=0.512  Sum_probs=24.1

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .++++++.++.|  +.|.||+|+|||||++.++...
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence            355666666665  8899999999999999998654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.77  E-value=8.1e-06  Score=62.80  Aligned_cols=40  Identities=23%  Similarity=0.111  Sum_probs=31.5

Q ss_pred             eEEcCCCCCcceee-eeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           22 SFSYPNLQDIRLSN-VDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        22 ~~~~~~~~~~~l~~-isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ...|+...    ++ ++|+.+ |++++++|+||+||||++..++..
T Consensus        81 ~~~~~~~~----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~  121 (297)
T 1j8m_F           81 SNLFGGDK----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYF  121 (297)
T ss_dssp             HHHTTCSC----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred             HHHhcccc----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence            45565432    46 788876 999999999999999999988754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.77  E-value=1.3e-05  Score=56.54  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=21.2

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|.+++|.|++||||||+.+.++.
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999999875

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.73  E-value=1.5e-05  Score=55.29  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|++|+|||||++.+.+.
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999863

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.72  E-value=1.2e-05  Score=56.88  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=22.2

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++.++.|+|++||||||+.+.++.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4577899999999999999999874

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.71  E-value=1.7e-05  Score=57.69  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=21.2

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+-+++|+|++||||||+.+.++.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999974

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.70  E-value=1.6e-05  Score=54.96  Aligned_cols=19  Identities=37%  Similarity=0.586  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCcchHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLL   63 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i   63 (158)
                      +++|+||+||||||+.+.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999998

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.70  E-value=1.7e-05  Score=59.05  Aligned_cols=24  Identities=42%  Similarity=0.500  Sum_probs=21.1

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .-+++|.||+||||||+.+.++..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999743

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.70  E-value=1.2e-05  Score=60.17  Aligned_cols=28  Identities=11%  Similarity=0.221  Sum_probs=24.6

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ...++.++.|+|++||||||+.+.++..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            5667889999999999999999999754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.69  E-value=1.2e-05  Score=56.75  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=22.2

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ..+.++.|+|++||||||+.+.++.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4678899999999999999999873

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.69  E-value=1.4e-05  Score=64.34  Aligned_cols=39  Identities=15%  Similarity=0.038  Sum_probs=31.3

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ...|+...    ++++|+  +|++++++|+|||||||++..+++.
T Consensus        83 ~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~  121 (425)
T 2ffh_A           83 KEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY  121 (425)
T ss_dssp             HHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            55565431    577887  8999999999999999999988854

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.68  E-value=2.1e-05  Score=56.21  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=23.0

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+|.+++|+|+.||||||+.+.++..
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            36789999999999999999999754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.67  E-value=2.2e-05  Score=55.84  Aligned_cols=23  Identities=26%  Similarity=0.226  Sum_probs=20.5

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+++|+|++|||||||++.+...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            57899999999999999988754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.66  E-value=2.7e-05  Score=55.96  Aligned_cols=22  Identities=41%  Similarity=0.539  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+.|+||||||||||++.+...
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999988643

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.66  E-value=2.4e-05  Score=55.23  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=20.8

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+..+.|+|++||||||+.+.++.
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999999873

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.64  E-value=2.1e-05  Score=58.96  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++|+||||||||||.+.|+.
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.63  E-value=2.5e-05  Score=59.62  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=22.4

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ..+.++.|.||+||||||+.+.++..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999998743

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.63  E-value=2.1e-05  Score=55.17  Aligned_cols=21  Identities=33%  Similarity=0.444  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|++||||||+.+.|+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999974

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.63  E-value=6.9e-05  Score=64.58  Aligned_cols=27  Identities=15%  Similarity=0.197  Sum_probs=23.1

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+..|+.+.|+||+||||||++.++..
T Consensus       105 ~l~~~~~vii~gpTGSGKTtllp~ll~  131 (773)
T 2xau_A          105 LYQNNQIMVFVGETGSGKTTQIPQFVL  131 (773)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhCCCeEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999998877754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.63  E-value=2.5e-05  Score=55.64  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++|.|++||||||+.+.++..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999853

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.62  E-value=2.6e-05  Score=54.77  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|++|+|||||++.+++.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999863

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.62  E-value=2.9e-05  Score=54.52  Aligned_cols=26  Identities=27%  Similarity=0.288  Sum_probs=17.5

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++.++.|.|++||||||+.+.++..
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            35678999999999999999999743

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.60  E-value=3e-05  Score=60.87  Aligned_cols=28  Identities=25%  Similarity=0.529  Sum_probs=24.6

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -+++|+++.|.||||||||||+..++..
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~   84 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVAN   84 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999998777643

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.60  E-value=2.9e-05  Score=55.80  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.7

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+|.+++|.|+.||||||+.+.++.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999999999974

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.60  E-value=2.8e-05  Score=55.12  Aligned_cols=25  Identities=16%  Similarity=0.218  Sum_probs=22.3

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++.+++|+|+.||||||+.+.++.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999874

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.59  E-value=2.7e-05  Score=54.92  Aligned_cols=21  Identities=33%  Similarity=0.434  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|++|+|||||++.+++
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999999976

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.59  E-value=2.8e-05  Score=55.45  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+++|+|++||||||+.+.++..
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC
Confidence            47999999999999999999754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.58  E-value=3.2e-05  Score=54.02  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++.|.|++||||||+.+.++.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.58  E-value=3.2e-05  Score=55.65  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=22.9

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ..+|.+++|+|+.||||||+.+.++.
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999999974

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.58  E-value=3.3e-05  Score=55.39  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +|.+++|.|+.||||||+.+.|+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.54  E-value=3.7e-05  Score=54.29  Aligned_cols=23  Identities=17%  Similarity=0.176  Sum_probs=20.5

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+++|+|++||||||+.+.++.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999998863

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.52  E-value=3e-05  Score=59.36  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=25.3

Q ss_pred             eEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++.+.++..+.|.||+|+|||||.+.++.
T Consensus        43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           43 KFGMTPSKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             HHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             HcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence            34567889999999999999999999974

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.52  E-value=1.4e-05  Score=56.92  Aligned_cols=27  Identities=19%  Similarity=0.229  Sum_probs=23.3

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++.+.+++|+|+.||||||+.+.++.
T Consensus         8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A            8 DLRKCKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             HHHHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            345678999999999999999999874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.49  E-value=4.7e-05  Score=53.68  Aligned_cols=22  Identities=18%  Similarity=0.114  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++|.|++||||||+.+.++..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998753

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.48  E-value=0.001  Score=53.61  Aligned_cols=116  Identities=12%  Similarity=0.121  Sum_probs=64.3

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--ceeeeccccchhhHhhHHHHHHHHH-HHcCCCCCCCCCCC
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--KLRIGRHSRHLEDLLTMEEAVHAKL-RKFGLPGHNHLTPI  108 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~  108 (158)
                      .|+.+.--+++|+++.|.|++|+|||||+.-++.....  ...+.+..-.    .+..+...+++ ...+++.... + -
T Consensus       189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE----~~~~~l~~R~~~~~~~i~~~~l-~-~  262 (444)
T 2q6t_A          189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE----MPAAQLTLRMMCSEARIDMNRV-R-L  262 (444)
T ss_dssp             HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS----SCHHHHHHHHHHHHTTCCTTTC-C-G
T ss_pred             hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC----CCHHHHHHHHHHHHcCCCHHHH-h-C
Confidence            35555555899999999999999999998777643221  1122221111    11222233333 2345543222 2 2


Q ss_pred             CCCChHHHHHHHHHHHHhh----------CCCHHHHHHHH-HHHhhcCCeEEEEee
Q 044538          109 ANLSGGQKVRVMFTLVSMY----------HLDTQSIVAVA-VTLDEFAGGVVLVSH  153 (158)
Q Consensus       109 ~~LSgGqkqrv~ia~~~l~----------~lD~~~~~~l~-~~l~~~~~tvi~vtH  153 (158)
                      ..||..+.+|+.-|...+.          .++........ +..++.+..+|+|-+
T Consensus       263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~  318 (444)
T 2q6t_A          263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDY  318 (444)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            5799999999877544332          23444433333 333345566777643

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.48  E-value=1.6e-05  Score=57.24  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++|.|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999998743

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.46  E-value=3.5e-05  Score=65.35  Aligned_cols=30  Identities=33%  Similarity=0.416  Sum_probs=24.9

Q ss_pred             eEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      |+++.++..++|+|+||+|||||++.+.+.
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~   32 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYK   32 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence            467788999999999999999999999854

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.46  E-value=6.8e-05  Score=54.52  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=21.5

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|.+++|+|+.||||||+.+.|+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999874

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.46  E-value=4.1e-05  Score=56.41  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=22.9

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.+|+.+++.||+||||||++..+..
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            456799999999999999998876653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.45  E-value=5.9e-05  Score=53.94  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++|.|++||||||+.+.++.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999975

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.44  E-value=6.2e-05  Score=57.58  Aligned_cols=24  Identities=13%  Similarity=0.313  Sum_probs=18.1

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++-+++|.||+||||||+.+.+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999998875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.41  E-value=7.2e-05  Score=54.70  Aligned_cols=25  Identities=16%  Similarity=0.243  Sum_probs=20.9

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++.+++|+|+.||||||+.+.|+.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.40  E-value=9e-05  Score=53.07  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.+++|+|+.||||||+.+.++.
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999874

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.39  E-value=7.5e-05  Score=54.96  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|++|+|||||++.+.+.
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4799999999999999999863

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.38  E-value=7.9e-05  Score=53.85  Aligned_cols=21  Identities=14%  Similarity=0.292  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+||.||||||+.+.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999863

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.37  E-value=7e-05  Score=54.52  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=20.9

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.++.|+|++||||||+.+.|+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999874

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.37  E-value=8.8e-05  Score=52.48  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+++|+|++|||||||+..+...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999887753

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.37  E-value=3.7e-05  Score=62.84  Aligned_cols=34  Identities=26%  Similarity=0.506  Sum_probs=29.3

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .++++++.+++|  +.|+||+|+|||||.+.+++..
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence            567788888887  7899999999999999998754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.36  E-value=7.8e-05  Score=52.52  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=19.7

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+++|+|+.||||||+.+.++.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.36  E-value=7.1e-05  Score=59.77  Aligned_cols=28  Identities=29%  Similarity=0.364  Sum_probs=23.8

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+..|..++|+|+||+|||||++.+++.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4567788999999999999999999753

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.36  E-value=4.8e-05  Score=59.91  Aligned_cols=42  Identities=19%  Similarity=0.254  Sum_probs=28.8

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+.++ ...|..  +.++++++|.|      +|+|+||+|||||++.|.+
T Consensus        18 v~~~~l-~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~   59 (361)
T 2qag_A           18 VGFANL-PNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFL   59 (361)
T ss_dssp             ---CCH-HHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTT
T ss_pred             EEeccc-hHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhC
Confidence            444443 444432  24577888876      9999999999999999864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.36  E-value=9.2e-05  Score=52.25  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++|.|+.||||||+.+.++..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999753

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.36  E-value=7.4e-05  Score=56.22  Aligned_cols=22  Identities=36%  Similarity=0.465  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|++|||||||++.+++.
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999854

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.35  E-value=8.5e-05  Score=51.61  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.7

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+++|+|+.||||||+.+.++.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.35  E-value=8.9e-05  Score=53.04  Aligned_cols=24  Identities=17%  Similarity=0.203  Sum_probs=20.6

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ...+++|+|+.||||||+.+.++.
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998873

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.34  E-value=8.4e-05  Score=59.88  Aligned_cols=22  Identities=45%  Similarity=0.522  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+||||||||++.+.+.
T Consensus       182 kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.34  E-value=9.6e-05  Score=55.40  Aligned_cols=25  Identities=24%  Similarity=0.183  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++.++.|+|++||||||+.+.++..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4668999999999999999998753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.34  E-value=9.7e-05  Score=53.42  Aligned_cols=21  Identities=14%  Similarity=0.246  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+||.||||||+.+.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999863

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.33  E-value=0.0001  Score=57.62  Aligned_cols=28  Identities=32%  Similarity=0.424  Sum_probs=25.3

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -+++|+++.|.||+|||||||+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999999888754

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.32  E-value=0.00011  Score=50.80  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++|.|+.||||||+.+.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999975

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.32  E-value=0.00012  Score=50.88  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+|+.||||||+.+.++.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999974

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.31  E-value=9.8e-05  Score=52.00  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.3

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ..+++|+|+.||||||+.+.++.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999874

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.31  E-value=0.00011  Score=52.90  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -+++|+|+.||||||+.+.++..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999753

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.29  E-value=0.00011  Score=54.61  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -+++|.|+.||||||+.+.|+.
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.29  E-value=0.00014  Score=52.73  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+..+.|.||+|+|||||++.++.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999998874

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.29  E-value=0.0001  Score=58.20  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++|+|++|||||||++.+++
T Consensus       181 ~V~lvG~~naGKSTLln~L~~  201 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTG  201 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            389999999999999999985

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.27  E-value=0.00012  Score=54.27  Aligned_cols=24  Identities=17%  Similarity=0.112  Sum_probs=21.2

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++-+++|+||.||||||+.+.|+.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            556899999999999999999873

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.26  E-value=0.00013  Score=60.12  Aligned_cols=31  Identities=16%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+++++.++..+.|.|++||||||+++.|..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999999999998753

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.26  E-value=0.00017  Score=57.05  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.9

Q ss_pred             CCCEEEEECCCCCCcchHHHHHH
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+..++|+||+||||||+++.+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~   56 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLL   56 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHH
Confidence            57788999999999999999886

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.23  E-value=0.00017  Score=55.86  Aligned_cols=28  Identities=32%  Similarity=0.470  Sum_probs=25.2

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -+++|+++.|.||+|||||||+..++..
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            5789999999999999999999888753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.21  E-value=0.00018  Score=53.18  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=20.2

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+|.++++.|++||||||+.+.+...
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~   48 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDR   48 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999988743

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.21  E-value=0.00017  Score=52.77  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++|.|++||||||+.+.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.21  E-value=0.00014  Score=55.19  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             CCEEEEECCCCCCcchHHHHHH
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ..+++|+|+.||||||+.+.++
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3479999999999999999987

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.21  E-value=0.00019  Score=54.36  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.3

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++..+.|.||+|+||||+.+.++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHH
Confidence            5678999999999999999999854

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00017  Score=50.71  Aligned_cols=24  Identities=33%  Similarity=0.656  Sum_probs=20.8

Q ss_pred             CEEEEECCCCCCcchHHHHHHhhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      -.++++|+.|+|||||++.+.+..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999997643

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.20  E-value=0.00014  Score=56.45  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=23.3

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ..+..+.|.||+|+|||||++.++...
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            457789999999999999999988643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.19  E-value=0.00014  Score=58.75  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.2

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ++.+++++|||||||||++..++..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~  120 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYF  120 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999888743

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.15  E-value=0.00019  Score=52.13  Aligned_cols=24  Identities=13%  Similarity=0.267  Sum_probs=21.0

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|-.++|+|+.||||||+.+.|+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999974

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.15  E-value=0.00019  Score=54.42  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|++|||||||++.+++.
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999863

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.14  E-value=0.00022  Score=48.68  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            478999999999999999875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.12  E-value=0.00025  Score=50.58  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=21.1

Q ss_pred             CEEEEECCCCCCcchHHHHHHhhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ..+.|.||+|+|||||++.++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            678999999999999999987543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.11  E-value=0.00026  Score=48.05  Aligned_cols=22  Identities=45%  Similarity=0.502  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++++|+.|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.10  E-value=0.00021  Score=51.66  Aligned_cols=21  Identities=14%  Similarity=0.324  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|.|+.||||||+.+.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999874

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.10  E-value=0.00026  Score=48.07  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999998874

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.10  E-value=0.00021  Score=52.50  Aligned_cols=29  Identities=17%  Similarity=0.263  Sum_probs=23.6

Q ss_pred             eEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +-.+.+..++.|+||.||||+|..+.|+.
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34456678899999999999999998873

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.09  E-value=0.00023  Score=53.98  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.1

Q ss_pred             CEEEEECCCCCCcchHHHHHHhhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ..+.|.||+|+||||+.+.++...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            578999999999999999998543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.09  E-value=0.00024  Score=48.18  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~   25 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999999874

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.09  E-value=0.00022  Score=50.06  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++++|++|+|||||++.+.+.
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998743

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.08  E-value=0.00032  Score=48.68  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=21.3

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+..+.|.||.|+||||+++.++..
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999988754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.07  E-value=0.00028  Score=48.51  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            479999999999999999874

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.07  E-value=0.00029  Score=48.20  Aligned_cols=21  Identities=24%  Similarity=0.254  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            479999999999999999874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.07  E-value=0.00035  Score=48.25  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=20.7

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.-.++++|+.|+|||||++.+..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            345689999999999999999874

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.07  E-value=0.00028  Score=47.95  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999999875

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.07  E-value=0.00037  Score=53.96  Aligned_cols=34  Identities=29%  Similarity=0.303  Sum_probs=28.5

Q ss_pred             cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ..+++..+.+ .|.-++|+|+||+||||+...+..
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            3577777887 788899999999999999887763

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.06  E-value=0.00029  Score=48.68  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999998874

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.06  E-value=0.0003  Score=48.12  Aligned_cols=21  Identities=33%  Similarity=0.382  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999875

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.06  E-value=0.00027  Score=53.57  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++.|+|++||||||+.+.++.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.05  E-value=0.0003  Score=47.90  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            379999999999999999874

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.05  E-value=0.00032  Score=52.68  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=22.6

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.++..+.|.||+|+|||||.+.++.
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            45667799999999999999999974

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.05  E-value=0.00031  Score=48.12  Aligned_cols=20  Identities=35%  Similarity=0.521  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .++++|+.|+|||||++.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37899999999999999886

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.05  E-value=0.00035  Score=51.28  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+..+.|+|+.||||||+.+.|+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.04  E-value=0.00028  Score=56.51  Aligned_cols=28  Identities=25%  Similarity=0.126  Sum_probs=23.6

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.-.+..++.|+|++||||||+.+.++.
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3345678999999999999999998864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.04  E-value=0.00028  Score=48.15  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999998874

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.03  E-value=0.00032  Score=48.37  Aligned_cols=21  Identities=33%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            379999999999999999874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.03  E-value=0.00031  Score=51.34  Aligned_cols=25  Identities=36%  Similarity=0.488  Sum_probs=21.9

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+|.++++.|+.||||||+.+.+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999999998864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.03  E-value=0.00033  Score=47.84  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++++|+.|+|||||++.+.+.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3799999999999999998753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.02  E-value=0.00027  Score=48.25  Aligned_cols=21  Identities=29%  Similarity=0.461  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999998863

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.01  E-value=0.00031  Score=50.75  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+++|+|+.||||||+.+.++.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998873

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.01  E-value=0.00034  Score=48.29  Aligned_cols=21  Identities=33%  Similarity=0.354  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+.+
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.00  E-value=0.00031  Score=47.98  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            379999999999999999874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.00  E-value=0.00036  Score=51.90  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=22.0

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|.++++.|++||||||+.+.+..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999998874

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.00  E-value=0.00033  Score=54.86  Aligned_cols=22  Identities=36%  Similarity=0.529  Sum_probs=19.7

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+++|+||+|||||||.+.|+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            3789999999999999988874

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.99  E-value=0.00019  Score=49.89  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=19.0

Q ss_pred             CEEEEECCCCCCcchHHHHHH
Q 044538           44 TCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~   64 (158)
                      -.++++|++|+|||||++.+.
T Consensus        19 ~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHh
Confidence            368999999999999999886

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.99  E-value=0.00034  Score=53.85  Aligned_cols=27  Identities=19%  Similarity=0.353  Sum_probs=24.4

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -+++|+++.|.||+|+|||||+..++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999887764

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.99  E-value=0.00036  Score=56.84  Aligned_cols=34  Identities=18%  Similarity=0.151  Sum_probs=28.4

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++.+ +.+-+|+..+|+|++|+|||||++.++..
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~  174 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN  174 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence            44444 67789999999999999999999988743

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.98  E-value=0.00031  Score=53.92  Aligned_cols=26  Identities=23%  Similarity=0.202  Sum_probs=22.0

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+..+.|.||+|+|||||++.++...
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            34678999999999999999998643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.98  E-value=0.00034  Score=48.30  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        11 ~i~v~G~~~~GKssli~~l~~   31 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQ   31 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999999875

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.98  E-value=0.00065  Score=49.36  Aligned_cols=32  Identities=31%  Similarity=0.344  Sum_probs=25.8

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+...-+.+ .|..+.|+||+|+|||||...++
T Consensus        24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La   55 (205)
T 2qmh_A           24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV   55 (205)
T ss_dssp             CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHH
T ss_pred             eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHH
Confidence            456655554 57889999999999999988876

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.98  E-value=0.00038  Score=47.64  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999999874

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.98  E-value=0.00039  Score=48.93  Aligned_cols=21  Identities=38%  Similarity=0.406  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|++|+|||||++.+..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999987763

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.98  E-value=0.0003  Score=49.44  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -.++|+|+.|+|||||++.+.+.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999998753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.97  E-value=0.00031  Score=49.19  Aligned_cols=22  Identities=50%  Similarity=0.560  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+.|+|||||++.+.+.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.97  E-value=0.0004  Score=47.38  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.97  E-value=0.00039  Score=48.52  Aligned_cols=21  Identities=14%  Similarity=0.159  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        13 ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999999974

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.96  E-value=0.00041  Score=48.30  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999999974

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.96  E-value=0.0004  Score=48.84  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            469999999999999999875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.95  E-value=0.00043  Score=47.15  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            368999999999999999874

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.94  E-value=0.00044  Score=50.54  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|.++++-|++||||||+.+.+..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~   25 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVE   25 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999998874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.94  E-value=0.00044  Score=47.71  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         8 ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHG
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            379999999999999999874

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.93  E-value=0.00042  Score=53.74  Aligned_cols=23  Identities=43%  Similarity=0.587  Sum_probs=20.2

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+++|+||+|||||||...++.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHH
Confidence            45789999999999999988874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.93  E-value=0.00035  Score=48.77  Aligned_cols=21  Identities=29%  Similarity=0.365  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+.+
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            368999999999999999875

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.93  E-value=0.00044  Score=47.98  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        20 ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            479999999999999999874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.92  E-value=0.00053  Score=49.24  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+.|.||.|+|||||++.++..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999988753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.92  E-value=0.0004  Score=47.83  Aligned_cols=21  Identities=19%  Similarity=0.332  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.92  E-value=0.00046  Score=48.38  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        23 ki~vvG~~~~GKSsli~~l~~   43 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            479999999999999999974

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.92  E-value=0.0006  Score=49.81  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.5

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHH
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++|+++.|.|+.|+|||||+.-++
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999976554

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.92  E-value=0.00047  Score=48.36  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++++|+.|+|||||++.+.+.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.91  E-value=0.00048  Score=48.21  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+.|+|||||++.+.+.
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4699999999999999988753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.91  E-value=0.00043  Score=54.14  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++.+++|+||.|||||||...|+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.91  E-value=0.00045  Score=53.72  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=19.8

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+++|+||+|||||||.+.++.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998874

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.91  E-value=0.00047  Score=47.93  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~   40 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQ   40 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            368999999999999999874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.90  E-value=0.00039  Score=48.24  Aligned_cols=25  Identities=20%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+..+.|.||.|+||||+++.++..
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3567889999999999999988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.90  E-value=0.00048  Score=47.62  Aligned_cols=21  Identities=29%  Similarity=0.275  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            479999999999999999874

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.90  E-value=0.00049  Score=47.39  Aligned_cols=21  Identities=29%  Similarity=0.273  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTE   37 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999975

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.89  E-value=0.00048  Score=49.47  Aligned_cols=22  Identities=36%  Similarity=0.717  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++++|+.|+|||||++.+...
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999998753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.89  E-value=0.00053  Score=47.45  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        14 ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            479999999999999999874

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.89  E-value=0.00051  Score=50.37  Aligned_cols=27  Identities=30%  Similarity=0.374  Sum_probs=23.6

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+|.++.+-|+.||||||+.+.+....
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l   29 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKL   29 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999987543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.88  E-value=0.00057  Score=50.45  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=22.2

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +....-+.|.||.|+||||+.+.++..
T Consensus        36 ~~~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           36 AKVPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            344566889999999999999999753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.87  E-value=0.00044  Score=54.69  Aligned_cols=22  Identities=45%  Similarity=0.520  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|++|+|||||++.+++.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3699999999999999999853

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.86  E-value=0.00047  Score=48.23  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         9 ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            469999999999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.86  E-value=0.00048  Score=49.61  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -.++++|+.|+|||||++.++..
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            36899999999999999988754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.86  E-value=0.00045  Score=51.75  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+.|||||||++.+.+.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5799999999999999999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.86  E-value=0.00054  Score=48.47  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        16 ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999999874

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.85  E-value=0.0006  Score=53.83  Aligned_cols=23  Identities=43%  Similarity=0.478  Sum_probs=20.6

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      |-.++|+|.+|+|||||++.+++
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~   24 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTK   24 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            35689999999999999999985

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.85  E-value=0.00054  Score=50.50  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=22.7

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+|.++++.|+.||||||+.+.+...
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~   44 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEY   44 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999988743

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.85  E-value=0.0005  Score=47.86  Aligned_cols=21  Identities=29%  Similarity=0.316  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        12 ki~v~G~~~~GKSsli~~l~~   32 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIE   32 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999874

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.84  E-value=0.00049  Score=50.66  Aligned_cols=24  Identities=29%  Similarity=0.326  Sum_probs=21.3

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      |.+++|.|+.||||||+.+.++..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            568999999999999999999753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.84  E-value=0.00057  Score=47.97  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            479999999999999999874

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.84  E-value=0.00058  Score=47.39  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999998874

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.84  E-value=0.00052  Score=52.64  Aligned_cols=22  Identities=50%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|++|+|||||++.+.+.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999853

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.84  E-value=0.0007  Score=53.25  Aligned_cols=26  Identities=35%  Similarity=0.604  Sum_probs=23.7

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++|+++.|.|++|+|||||...++.
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~   85 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIA   85 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999999877764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.84  E-value=0.00052  Score=47.64  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            479999999999999998873

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.83  E-value=0.0006  Score=48.36  Aligned_cols=21  Identities=33%  Similarity=0.412  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+.+
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVN   30 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            479999999999999999874

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.83  E-value=0.00044  Score=49.19  Aligned_cols=20  Identities=35%  Similarity=0.521  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .++|+|++|+|||||++.+.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57999999999999999885

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.82  E-value=0.00013  Score=54.41  Aligned_cols=31  Identities=39%  Similarity=0.556  Sum_probs=23.4

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.++.+..+.|  +.|.||+|+|||||.+.++.
T Consensus        36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHH
T ss_pred             HHHCCCCCCce--EEEECCCCCcHHHHHHHHHH
Confidence            33444455555  77999999999999999973

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.81  E-value=0.00062  Score=47.77  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+.+
T Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999874

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.80  E-value=0.00064  Score=48.19  Aligned_cols=21  Identities=38%  Similarity=0.607  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|++|+|||||++.+.+
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999998875

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.80  E-value=0.00059  Score=48.13  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~   45 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQ   45 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            479999999999999999874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.79  E-value=0.00023  Score=54.82  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=27.0

Q ss_pred             ceeeeeEEeeCC--CEEEEECCCCCCcchHHHHHHhh
Q 044538           32 RLSNVDMGIDMG--TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        32 ~l~~isl~i~~G--~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++.+.-.+..|  ..+.|.||+|+||||+++.++..
T Consensus        45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            455555556666  44899999999999999998754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.79  E-value=0.00054  Score=48.22  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        10 ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            479999999999999999975

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.79  E-value=0.00064  Score=50.94  Aligned_cols=21  Identities=38%  Similarity=0.422  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|||||||++.+++
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            479999999999999999985

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.79  E-value=0.00069  Score=47.53  Aligned_cols=21  Identities=19%  Similarity=0.414  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        22 ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            469999999999999999874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.78  E-value=0.00066  Score=49.33  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++.|+||.||||+|..+.|+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998873

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.78  E-value=0.00068  Score=47.68  Aligned_cols=21  Identities=29%  Similarity=0.233  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            479999999999999999874

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.78  E-value=0.00059  Score=47.61  Aligned_cols=22  Identities=14%  Similarity=0.300  Sum_probs=19.6

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      =.++++|+.|+|||||++.+.+
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3579999999999999999874

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.78  E-value=0.00055  Score=51.52  Aligned_cols=20  Identities=40%  Similarity=0.497  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .++|+|++|+|||||++.|.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~   29 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLF   29 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            37999999999999999875

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.78  E-value=0.00083  Score=46.48  Aligned_cols=21  Identities=24%  Similarity=0.172  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        10 ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999998874

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.77  E-value=0.00062  Score=48.80  Aligned_cols=21  Identities=19%  Similarity=0.341  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|++|+|||||++.+..
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            479999999999999998864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.76  E-value=0.00057  Score=55.12  Aligned_cols=25  Identities=20%  Similarity=0.072  Sum_probs=21.5

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +..+.|.||+|+|||||++.++...
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999998543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.75  E-value=0.00067  Score=52.10  Aligned_cols=23  Identities=48%  Similarity=0.476  Sum_probs=20.3

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+++|+|+.|+|||||++.+.+.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            36899999999999999999853

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.75  E-value=0.00072  Score=52.31  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.1

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ..+++|+||+|||||||...++.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            35789999999999999988874

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.75  E-value=0.00065  Score=50.44  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+.|+|||||++.+.+.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.75  E-value=0.00065  Score=48.25  Aligned_cols=21  Identities=29%  Similarity=0.365  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        26 ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            579999999999999999874

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.74  E-value=0.00074  Score=47.83  Aligned_cols=21  Identities=24%  Similarity=0.301  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999999874

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.74  E-value=0.00077  Score=47.48  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~   45 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSK   45 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            479999999999999999874

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.74  E-value=0.00068  Score=47.46  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999999874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.73  E-value=0.00068  Score=47.69  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+.|+|||||++.+...
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4699999999999999998753

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.73  E-value=0.00066  Score=54.77  Aligned_cols=29  Identities=21%  Similarity=0.335  Sum_probs=23.0

Q ss_pred             EEeeCC--CEEEEECCCCCCcchHHHHHHhh
Q 044538           38 MGIDMG--TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        38 l~i~~G--~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      |.+.++  .+++++|++|+||||+...++..
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~  122 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARY  122 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            444434  58999999999999999888753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.73  E-value=0.0008  Score=47.52  Aligned_cols=21  Identities=33%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        30 ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999999875

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.72  E-value=0.00066  Score=51.22  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+.|||||||++.+.+.
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999853

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.72  E-value=0.00079  Score=47.27  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        24 ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999975

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.72  E-value=0.00037  Score=52.06  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=22.3

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++.+++|.|+.||||||+.+.|+..
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            56789999999999999999988744

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.72  E-value=0.0007  Score=48.14  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            479999999999999998863

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.71  E-value=0.00082  Score=47.02  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        17 ~i~v~G~~~~GKssli~~l~~   37 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTD   37 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            579999999999999999874

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.71  E-value=0.00058  Score=47.47  Aligned_cols=21  Identities=14%  Similarity=0.227  Sum_probs=9.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        10 ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999998863

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.70  E-value=0.00084  Score=47.59  Aligned_cols=21  Identities=24%  Similarity=0.305  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        30 ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            579999999999999999874

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.70  E-value=0.00073  Score=48.82  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=19.7

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -.++|+|+.|+|||||++-++..
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            36899999999999999888753

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.70  E-value=0.00079  Score=47.51  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999999874

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.69  E-value=0.00062  Score=47.10  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         9 ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999998875

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.68  E-value=0.00086  Score=47.15  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            579999999999999999874

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.68  E-value=0.00087  Score=47.69  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+.+
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            579999999999999999874

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.68  E-value=0.00091  Score=47.02  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            479999999999999988874

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.68  E-value=0.00088  Score=47.90  Aligned_cols=21  Identities=38%  Similarity=0.373  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus         9 ki~vvG~~~~GKTsli~~l~~   29 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLT   29 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            579999999999999998875

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.68  E-value=0.00079  Score=47.88  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999999874

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.67  E-value=0.00079  Score=48.32  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~   50 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAK   50 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999999975

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.66  E-value=0.00094  Score=47.85  Aligned_cols=21  Identities=14%  Similarity=0.175  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            469999999999999999874

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.65  E-value=0.00081  Score=48.88  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+.|+|||||++.+.+.
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999998753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.65  E-value=0.00096  Score=47.17  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        22 ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            579999999999999998873

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.65  E-value=0.00086  Score=47.88  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            589999999999999999874

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.64  E-value=0.00066  Score=47.64  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++++|+.|+|||||++.+.+.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999998754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.64  E-value=0.00072  Score=47.13  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++++|+.|+|||||++.+...
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4699999999999999999753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.63  E-value=0.00088  Score=48.19  Aligned_cols=21  Identities=33%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        36 ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            479999999999999998874

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.63  E-value=0.00099  Score=45.28  Aligned_cols=25  Identities=20%  Similarity=0.165  Sum_probs=21.1

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+.-+.|.||.|+|||++.+.+...
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHh
Confidence            3455799999999999999999753

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.63  E-value=0.0023  Score=51.71  Aligned_cols=33  Identities=21%  Similarity=0.228  Sum_probs=26.8

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      |+.+.--+.+|+.+.|.|++|+|||||+.-++.
T Consensus       187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            444443589999999999999999999776654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.62  E-value=0.0011  Score=47.23  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=19.0

Q ss_pred             CCCEEEEECCCCCCcchHH-HHH
Q 044538           42 MGTCVAIVGPNDTGKSPLP-NLL   63 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl-~~i   63 (158)
                      +|.++.+.||.||||||++ +++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHH
Confidence            4889999999999999997 444

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.62  E-value=0.00079  Score=52.21  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=22.4

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ..+..+.|.||.|+||||+++.++..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999988754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.58  E-value=0.00099  Score=47.33  Aligned_cols=21  Identities=29%  Similarity=0.355  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999999874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.58  E-value=0.00094  Score=47.23  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        31 ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998863

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.57  E-value=0.0012  Score=50.09  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=21.2

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++..+.|.||.|+||||+.+.++.
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3455789999999999999998874

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.57  E-value=0.001  Score=47.04  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+.+
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999997764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.56  E-value=0.0011  Score=46.64  Aligned_cols=21  Identities=29%  Similarity=0.249  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        20 ki~v~G~~~~GKssli~~l~~   40 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAN   40 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999999874

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.55  E-value=0.001  Score=50.70  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCcchHHHHHHhhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .++|+|+.|+|||||++.+.+..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            58999999999999999998643

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.54  E-value=0.001  Score=53.24  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=19.5

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+++|.||+|||||||...++.
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            4789999999999999988874

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.54  E-value=0.0011  Score=46.95  Aligned_cols=21  Identities=33%  Similarity=0.417  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.|.||.|+||||+++.++.
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998874

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.52  E-value=0.0018  Score=46.06  Aligned_cols=31  Identities=26%  Similarity=0.105  Sum_probs=23.4

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++..-+. -.|.-+.|.|+||+|||||...+.
T Consensus         7 lHas~v~-v~G~gvli~G~SGaGKStlal~L~   37 (181)
T 3tqf_A            7 WHANFLV-IDKMGVLITGEANIGKSELSLALI   37 (181)
T ss_dssp             EESEEEE-ETTEEEEEEESSSSSHHHHHHHHH
T ss_pred             EEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHH
Confidence            4443444 457789999999999999987665

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.52  E-value=0.00042  Score=49.90  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -.++|+|+.|+|||||++.+.+.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            46899999999999999999764

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.52  E-value=0.0013  Score=47.67  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=20.4

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      |.++++=|+-||||||+++.+..
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~   24 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYH   24 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            56889999999999999998874

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.51  E-value=0.0014  Score=47.65  Aligned_cols=21  Identities=38%  Similarity=0.607  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|++|+|||||++.+.+
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998874

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.51  E-value=0.0012  Score=47.15  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            579999999999999988874

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.49  E-value=0.0013  Score=51.21  Aligned_cols=29  Identities=24%  Similarity=0.306  Sum_probs=25.1

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      --+++|..+.|.||.|+|||||...++..
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            45788899999999999999999888754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.48  E-value=0.0013  Score=53.19  Aligned_cols=24  Identities=29%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++.+++++|++|+||||++.-++.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~  122 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLAR  122 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHH
Confidence            468999999999999999887764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.47  E-value=0.0015  Score=48.39  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=19.3

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -.+||+|+.||||||+.+.|+.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHH
Confidence            3579999999999999998864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.46  E-value=0.0016  Score=50.25  Aligned_cols=27  Identities=30%  Similarity=0.358  Sum_probs=22.7

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+..-+.|.||.|+|||||.+.++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            455678999999999999999998543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.46  E-value=0.0013  Score=49.13  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++++|+.|+|||||++.+.+.
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999854

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.46  E-value=0.0013  Score=46.74  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        31 ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhh
Confidence            479999999999999998874

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.44  E-value=0.0013  Score=49.26  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++++|+.|+|||||++.+.+.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999853

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.43  E-value=0.00068  Score=47.94  Aligned_cols=22  Identities=36%  Similarity=0.561  Sum_probs=4.2

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+.|+|||||++.+...
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5799999999999999988643

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.43  E-value=0.0015  Score=51.02  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++..+.|.||+|+||||+.+.++.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999974

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.0015  Score=47.22  Aligned_cols=21  Identities=24%  Similarity=0.407  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        15 ki~v~G~~~vGKSsli~~l~~   35 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTK   35 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            479999999999999999874

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.42  E-value=0.0017  Score=49.47  Aligned_cols=25  Identities=24%  Similarity=0.169  Sum_probs=20.7

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ...+.|.||.|+|||+|.+.++...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467788999999999999998543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.42  E-value=0.0009  Score=46.85  Aligned_cols=20  Identities=25%  Similarity=0.424  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .++++|+.|+|||||++.+.
T Consensus        24 ~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999885

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.40  E-value=0.0017  Score=46.79  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~   49 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAK   49 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            479999999999999998874

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.40  E-value=0.0013  Score=49.52  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCcchHHHHHHhhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            68999999999999999998654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.39  E-value=0.0017  Score=50.45  Aligned_cols=27  Identities=30%  Similarity=0.320  Sum_probs=23.0

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+|..+.|.||.|+||||+.+.++...
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l   94 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQAL   94 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999999998544

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.38  E-value=0.0017  Score=48.96  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=20.6

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +..+.|.||.|+||||+.+.++..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999743

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.37  E-value=0.002  Score=49.50  Aligned_cols=25  Identities=24%  Similarity=0.163  Sum_probs=22.0

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      +..+.|.||.|+|||+|+..++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999987543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.37  E-value=0.0015  Score=49.05  Aligned_cols=22  Identities=45%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -.++++|.+|+|||||++.+.+
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~  121 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKG  121 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             hheEEeCCCCCCHHHHHHHHhc
Confidence            4789999999999999999975

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.36  E-value=0.0016  Score=46.39  Aligned_cols=21  Identities=19%  Similarity=0.162  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus        11 ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999998874

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.34  E-value=0.0015  Score=48.80  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +...+.|.||.|+||||+.+.++..
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4456889999999999999999754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.34  E-value=0.0021  Score=49.38  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=20.9

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +..-+.|.||.|+|||+|.+.++.
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            455689999999999999999974

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.33  E-value=0.0018  Score=50.59  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=20.5

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ..-+++|+|+.|+|||||++.++.
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998864

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.32  E-value=0.0022  Score=50.14  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=22.2

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+...+.|.||.|+|||||.+.++..
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            35667999999999999999999743

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.32  E-value=0.0022  Score=50.58  Aligned_cols=27  Identities=33%  Similarity=0.561  Sum_probs=23.6

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -+++|+++.|.||.|+|||||...++.
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            378999999999999999999876653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.31  E-value=0.0017  Score=52.47  Aligned_cols=22  Identities=45%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|++|+|||||++.+.+.
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999999753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.31  E-value=0.0011  Score=53.56  Aligned_cols=31  Identities=29%  Similarity=0.520  Sum_probs=24.4

Q ss_pred             eeeEEeeCCCE--EEEECCCCCCcchHHHHHHh
Q 044538           35 NVDMGIDMGTC--VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        35 ~isl~i~~G~~--~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.-.+..|.+  +.|.||+|+||||+.+.++.
T Consensus        40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~   72 (447)
T 3pvs_A           40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR   72 (447)
T ss_dssp             HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHH
Confidence            44445555665  89999999999999999974

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.29  E-value=0.0021  Score=49.98  Aligned_cols=24  Identities=17%  Similarity=0.180  Sum_probs=21.1

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +..+.|.||.|+|||||++.++..
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            557999999999999999988754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.25  E-value=0.0014  Score=47.05  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+.+
T Consensus        13 ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999988763

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.21  E-value=0.0019  Score=53.13  Aligned_cols=28  Identities=11%  Similarity=0.052  Sum_probs=24.0

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVRRR   68 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~~~   68 (158)
                      +.|.++.|+|.+||||||+-+.++....
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            5677899999999999999999986543

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.20  E-value=0.0022  Score=54.02  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=22.0

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +|.++.|+|.+||||||+.+.++..
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~   75 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEY   75 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            5678999999999999999998753

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.17  E-value=0.0029  Score=48.30  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=21.3

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      |..+.|.||.|+|||||++.+...
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHH
Confidence            589999999999999999988643

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.15  E-value=0.0023  Score=53.33  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .|.++.|+|.+||||||+.+.+...
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~  419 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVT  419 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.14  E-value=0.0016  Score=46.83  Aligned_cols=19  Identities=26%  Similarity=0.396  Sum_probs=16.9

Q ss_pred             EEEEECCCCCCcchHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLL   63 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i   63 (158)
                      .++++|+.|+|||||++.+
T Consensus        17 ki~v~G~~~~GKSsli~~~   35 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRH   35 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTB
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3689999999999999974

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=96.13  E-value=0.0015  Score=46.26  Aligned_cols=20  Identities=30%  Similarity=0.341  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .++|+|+.|+|||||++.+.
T Consensus        35 ki~vvG~~~~GKSsli~~l~   54 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFA   54 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSB
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47999999999999998775

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.12  E-value=0.0027  Score=48.80  Aligned_cols=23  Identities=26%  Similarity=0.563  Sum_probs=20.0

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ..+.|.||.|+||||+.+.++..
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999999743

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.11  E-value=0.0028  Score=49.67  Aligned_cols=24  Identities=25%  Similarity=0.549  Sum_probs=20.6

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ...+.|.||.|+||||+.+.++..
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999999743

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=95.11  E-value=0.00092  Score=47.49  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        32 ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            479999999999999987763

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.10  E-value=0.0025  Score=48.45  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ...+.|.||.|+||||+.+.++.
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.09  E-value=0.0025  Score=46.56  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=22.6

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++...+.+.||.|+||||+...++..
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence            566667999999999999998888754

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.09  E-value=0.0029  Score=49.46  Aligned_cols=26  Identities=31%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+..-+.|.||.|+|||||.+.++..
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHH
Confidence            34455889999999999999999743

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=96.02  E-value=0.003  Score=50.46  Aligned_cols=31  Identities=26%  Similarity=0.312  Sum_probs=27.2

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      |.=+.+.+|+..+|+|++|+|||||+..|+.
T Consensus       167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~  197 (427)
T 3l0o_A          167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIAN  197 (427)
T ss_dssp             HHHSCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred             hhcccccCCceEEEecCCCCChhHHHHHHHH
Confidence            5557789999999999999999999987763

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.99  E-value=0.0029  Score=48.45  Aligned_cols=22  Identities=18%  Similarity=0.446  Sum_probs=19.2

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -.++|+|+.|+|||||++.+..
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~   25 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFS   25 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999998763

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.99  E-value=0.0035  Score=46.53  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=20.7

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +..+.|.||.|+|||++.+.+...
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHh
Confidence            456789999999999999999753

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=95.95  E-value=0.0037  Score=45.60  Aligned_cols=20  Identities=25%  Similarity=0.581  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+||+|.-||||||+.+++.
T Consensus        11 ~iglTGgigsGKStv~~~l~   30 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFA   30 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47999999999999999986

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.95  E-value=0.0015  Score=44.28  Aligned_cols=25  Identities=8%  Similarity=0.062  Sum_probs=20.6

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+.-+.|.||.|+|||++.+.+...
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHh
Confidence            3455889999999999999988643

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.89  E-value=0.0044  Score=45.59  Aligned_cols=24  Identities=25%  Similarity=0.155  Sum_probs=19.6

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHH
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+|.++.+.||.|+||||++--++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~   33 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRL   33 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHH
Confidence            468899999999999999765444

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.89  E-value=0.0035  Score=51.54  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=20.3

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+..+++++|++||||||++..|+.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~  123 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAY  123 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999988874

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.86  E-value=0.0048  Score=49.70  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=22.3

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+..-+.|.||.|+|||||.+.++..
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            35567899999999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	8e-09
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-08
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	3e-08
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	3e-07
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-06
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	7e-06
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	8e-06
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-05
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	3e-05
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-04
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	1e-04
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	2e-04
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	4e-04
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	8e-04
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	9e-04
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	0.001
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	0.002
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	0.003

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 50.3 bits (120), Expect = 8e-09
 Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 57/195 (29%)

Query: 21  ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPL--------------------- 59
           I F Y     + L N+++ I  G  + IVG + +GKS L                     
Sbjct: 7   IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 66

Query: 60  -------------------PNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLP 100
                                LL       + +      +E ++   +   A      L 
Sbjct: 67  LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 126

Query: 101 GHNHLTPI---ANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFA 145
              +       A LSGGQ+ R+      +              LD +S   +   + +  
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 186

Query: 146 GG--VVLVSHDSRLI 158
            G  V++++H    +
Sbjct: 187 KGRTVIIIAHRLSTV 201

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 61/202 (30%)

Query: 17  LIEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------- 64
           ++    + F+Y + + I L ++       + +A  GP+  GKS + +LL           
Sbjct: 1   MLSARHVDFAYDDSEQI-LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

Query: 65  ------------VRRRQKLRIGRHSRHLEDLLTME-------------------EAVHAK 93
                          R ++        +      E                   +   A+
Sbjct: 60  TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119

Query: 94  LRKFGLPGHNHLTP---IANLSGGQKVRV------------MFTLVSMYHLDTQSIVAVA 138
                +P   +         +SGGQ+ R+            +    +   LD++S   V 
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

Query: 139 VTLDEFAGG--VVLVSHDSRLI 158
             LD    G   ++++H    I
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTI 201

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 40/199 (20%), Positives = 73/199 (36%), Gaps = 59/199 (29%)

Query: 18  IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA------------- 64
           I+ +SF Y + +   L ++++ I+ G  VA VG +  GKS L NL+              
Sbjct: 19  IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 78

Query: 65  -----------VRR----------------RQKLRIGRHSRHLEDLLTMEEAVHAKLRKF 97
                      +R                 ++ + +GR +   E+++   +  +A     
Sbjct: 79  GHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM 138

Query: 98  GLPGHNHLTPI----ANLSGGQKVRVMF--TLVS----------MYHLDTQSIVAVAVTL 141
            LP   + T +      LSGGQK R+      ++             LD +S   +   L
Sbjct: 139 NLP-QGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL 197

Query: 142 DEFAGG--VVLVSHDSRLI 158
           D  +     ++V+H    I
Sbjct: 198 DVLSKDRTTLIVAHRLSTI 216

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 58/199 (29%)

Query: 18  IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA------------- 64
              ++F+YP  +   L N+++ I  G  VA+VG + +GKS + +L+              
Sbjct: 16  FRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD 75

Query: 65  ---------VRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIA------ 109
                       R ++ +   + HL +        +A+  ++          +A      
Sbjct: 76  GHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFI 135

Query: 110 ----------------NLSGGQKVRVMF--TLVS----------MYHLDTQSIVAVAVTL 141
                            LSGGQ+ R+     L+              LDT+S  A+   L
Sbjct: 136 NKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 195

Query: 142 DEFAGG--VVLVSHDSRLI 158
           DE       ++++H    I
Sbjct: 196 DELQKNRTSLVIAHRLSTI 214

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 42/203 (20%), Positives = 64/203 (31%), Gaps = 63/203 (31%)

Query: 18  IEVISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA------------ 64
            + +SF+YPN  D+  L  +   +  G   A+VGPN +GKS +  LL             
Sbjct: 14  FQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL 73

Query: 65  -----------VRRRQKLRIG------------------RHSRHLEDLLTMEEAVHAKLR 95
                         RQ   +G                       +E++        A   
Sbjct: 74  DGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSF 133

Query: 96  KFGLPGHNHLTPI----ANLSGGQKVRVMFTLVSMYH------------LDTQSIVAVAV 139
             GLP     T +    + LSGGQ+  V      +              LD  S + V  
Sbjct: 134 ISGLPQGYD-TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 192

Query: 140 TLDEFAGG----VVLVSHDSRLI 158
            L E        V+L++    L+
Sbjct: 193 LLYESPERYSRSVLLITQHLSLV 215

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 42.0 bits (98), Expect = 7e-06
 Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 41/153 (26%)

Query: 17  LIEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---------- 64
           +IE+  +S  + N     L N+ + ++ G    I+GP   GK+    L+A          
Sbjct: 1   MIEIESLSRKWKNFS---LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57

Query: 65  ----------VRRRQKLRIGRHSRHLEDLLTM---------------EEAVHAKLRKFGL 99
                        +  +     +  L   + +                + V    R   +
Sbjct: 58  LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117

Query: 100 PGHNHLTPIANLSGGQKVRVMFTLVSMYHLDTQ 132
                  P+  LSGG++ RV      + +    
Sbjct: 118 EHLLDRNPL-TLSGGEQQRVALARALVTNPKIL 149

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (98), Expect = 8e-06
 Identities = 27/195 (13%), Positives = 57/195 (29%), Gaps = 47/195 (24%)

Query: 6   EPTESTSPMLQLIEVISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPL----- 59
           + +            +SFS+  L     L N+++ I+ G  +AI G   +GK+ L     
Sbjct: 24  QQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLIL 83

Query: 60  ----------------------PNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKF 97
                                   ++    ++ +  G          ++ +A   +    
Sbjct: 84  GELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDE-YRYKSVVKACQLQQDIT 142

Query: 98  GLPGHNHLTP---IANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV-AVTL 141
                ++         LSGGQ+ R+                    +LD  +   V    +
Sbjct: 143 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 202

Query: 142 DEFAGG--VVLVSHD 154
            +       +LV+  
Sbjct: 203 CKLMANKTRILVTSK 217

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 43/144 (29%)

Query: 18  IEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA----------- 64
           +++  ++ ++  +      ++++ I  G  V  VGP+  GKS L  ++A           
Sbjct: 1   VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58

Query: 65  ---------VRRRQKLRIGRHSRHLEDLLTM------------------EEAVHAKLRKF 97
                        + + +   S  L   L++                   + V+      
Sbjct: 59  IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 118

Query: 98  GLPGHNHLTPIANLSGGQKVRVMF 121
            L       P   LSGGQ+ RV  
Sbjct: 119 QLAHLLDRKP-KALSGGQRQRVAI 141

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 52/186 (27%)

Query: 18  IEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA----------- 64
           +E+  +S  Y       L  + M I+ G  V   GPN  GK+ L   ++           
Sbjct: 3   LEIRDLSVGYDKPV---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59

Query: 65  ------VRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPG--------------HNH 104
                  + + K+        +   +++E+ + A    +G+                 + 
Sbjct: 60  YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119

Query: 105 LTPIANLSGGQKVRVMFTLVSMYH------------LDTQSIVAVAVTLDEFAGG----V 148
              +  LS G   RV      + +            +D  S   V  ++ E        +
Sbjct: 120 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179

Query: 149 VLVSHD 154
           +    +
Sbjct: 180 ISSREE 185

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 17/148 (11%), Positives = 35/148 (23%), Gaps = 47/148 (31%)

Query: 18  IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPL------------------ 59
           +  +   +  +    +  + + +  G  + ++GP+  GK+                    
Sbjct: 6   LVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63

Query: 60  --------------------------PNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAK 93
                                       L                       +++ V   
Sbjct: 64  DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV 123

Query: 94  LRKFGLPGHNHLTPIANLSGGQKVRVMF 121
               GL    +  P   LSGGQ+ RV  
Sbjct: 124 AELLGLTELLNRKP-RELSGGQRQRVAL 150

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 12/47 (25%), Positives = 26/47 (55%)

Query: 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
          ++ +S  +   + + L NV++ I+ G    I+GP+  GK+    ++A
Sbjct: 6  VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIA 52

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 41/142 (28%)

Query: 18  IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA------------- 64
           +E ++  + N     ++ +++ I  G  + ++GP+  GK+    ++A             
Sbjct: 9   LENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 66

Query: 65  -----VRRRQKLRIGR--HSRHLEDLLT------------------MEEAVHAKLRKFGL 99
                    +   I     S  +   +T                  +++ V        +
Sbjct: 67  DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI 126

Query: 100 PGHNHLTPIANLSGGQKVRVMF 121
               +  P A LSGGQ+ RV  
Sbjct: 127 EELLNRYP-AQLSGGQRQRVAV 147

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 37/205 (18%), Positives = 70/205 (34%), Gaps = 67/205 (32%)

Query: 17  LIEV--ISFSYPNLQDIR--LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA-------- 64
           +I++  ++ +Y   ++I   L NV++ I  G  V+I+GP+ +GKS + N++         
Sbjct: 1   MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60

Query: 65  ----------------VRRRQKLRIG-----------------------RHSRHLEDLLT 85
                           + + ++ +IG                          R       
Sbjct: 61  EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120

Query: 86  MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYH------------LDTQS 133
             +     L+   L           LSGGQ+ RV        +            LD+++
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180

Query: 134 IVAVAVTL----DEFAGGVVLVSHD 154
              +   L    +E    VV+V+HD
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHD 205

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 26/132 (19%), Positives = 37/132 (28%), Gaps = 39/132 (29%)

Query: 28  LQDI----RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA-----------------VR 66
           LQD+    RL  +   +  G  + +VGPN  GKS L   +A                   
Sbjct: 6   LQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAW 65

Query: 67  RRQKLRIGRHSRHLEDLLTM-----------------EEAVHAKLRKFGLPGHNHLTPIA 109
              KL + R     +                       E ++       L          
Sbjct: 66  SATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RSTN 124

Query: 110 NLSGGQKVRVMF 121
            LSGG+  RV  
Sbjct: 125 QLSGGEWQRVRL 136

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 36.0 bits (83), Expect = 9e-04
 Identities = 25/200 (12%), Positives = 56/200 (28%), Gaps = 58/200 (29%)

Query: 10  STSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA----- 64
            +  +L+ ++ +   Y  +    +  +D+ +  G  V ++G N  GK+   + +A     
Sbjct: 2   VSDIVLE-VQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58

Query: 65  -------------------------VRRRQKLRIGRHSRHLEDLLTM----------EEA 89
                                        +  RI       E+L+            +  
Sbjct: 59  QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD 118

Query: 90  VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMF--------TLVSMYH----LDTQSIVAV 137
           +      F             LSGG++  +           L+ M      L    +  V
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178

Query: 138 AVTLDEFAG---GVVLVSHD 154
              + +       ++LV  +
Sbjct: 179 FEVIQKINQEGTTILLVEQN 198

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
          T  +L+  E I   +   +   L  V + ++ G    I+GPN +GKS L N++ 
Sbjct: 1  TMEILR-TENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT 51

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 17/145 (11%), Positives = 37/145 (25%), Gaps = 44/145 (30%)

Query: 18  IEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA----------- 64
           + V  +       +   L  +   I+ G    ++GPN  GK+    +++           
Sbjct: 3   VVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 60

Query: 65  ----------VRRRQKLRIGRHSRHLEDLLT------------------MEEAVHAKLRK 96
                        R+ +            +                   +EE V      
Sbjct: 61  VFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI 120

Query: 97  FGLPGHNHLTPIANLSGGQKVRVMF 121
            GL        ++  S G   +++ 
Sbjct: 121 AGLGEKIK-DRVSTYSKGMVRKLLI 144

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 64/201 (31%)

Query: 17  LIEV--ISFSYPNLQDIR--LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA-------- 64
           +I++  I+  +         L+NV + +  G    ++G +  GKS L   +         
Sbjct: 1   MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60

Query: 65  -----------------VRRRQKLRIGRHSRHLEDLLT------------------MEEA 89
                             + R+++ +     +L    T                  ++  
Sbjct: 61  SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120

Query: 90  VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMF---------------TLVSMYHLDTQSI 134
           V   L   GL   +   P +NLSGGQK RV                    ++    T+SI
Sbjct: 121 VTELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179

Query: 135 VAVAVTLDEFAG-GVVLVSHD 154
           + +   ++   G  ++L++H+
Sbjct: 180 LELLKDINRRLGLTILLITHE 200

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.98
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.97
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.97
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.97
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.97
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.97
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.96
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.94
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.65
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.42
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.25
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.98
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	98.33
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.31
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.19
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.14
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.12
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.11
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.02
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.02
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.02
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.98
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.94
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.93
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.92
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.89
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.89
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.89
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.86
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.85
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.82
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.82
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.79
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.76
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.7
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.68
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.68
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.67
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.66
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.66
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.65
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.64
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.63
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.62
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.62
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.61
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.6
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.6
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.58
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.54
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.54
d1okkd2	207	GTPase domain of the signal recognition particle r	97.53
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.53
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.52
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.51
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.5
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.49
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.48
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.48
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.45
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.45
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.44
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.41
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.4
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.39
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.37
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.36
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.35
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.35
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.35
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.35
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.34
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.33
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.32
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.31
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.3
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.29
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.27
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.27
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.25
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.25
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.25
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.25
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.24
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.23
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.22
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.22
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.21
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.21
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.2
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.19
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.19
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.17
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.15
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.14
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.14
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.13
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.12
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.11
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.11
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.1
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.1
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.09
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.09
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.09
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.07
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.06
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.06
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.04
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.04
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.02
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.0
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.98
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.95
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.94
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.94
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.93
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.93
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.89
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.88
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.88
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.87
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.87
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.86
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.86
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.84
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.83
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.82
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.82
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.81
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.79
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.79
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.79
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.78
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.77
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.77
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.75
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.75
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.75
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.75
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.74
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.73
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.72
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.71
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.7
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.68
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.67
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.66
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.66
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.62
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.62
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.61
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.57
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.57
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.56
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.55
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.55
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.54
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.53
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.52
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.51
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.51
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.5
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.5
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.5
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.49
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.49
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.47
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.46
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.45
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.45
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.42
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.4
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.37
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.35
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.35
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.34
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.31
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.31
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.3
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.3
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.29
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.13
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.11
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.04
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.04
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.04
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.99
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.98
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.97
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	95.87
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.82
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.82
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.8
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.72
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.59
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.57
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.54
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.53
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.46
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.32
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.28
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.12
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.07
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.01
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.95
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.88
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.88
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.87
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.86
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.86
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.85
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.82
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.8
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	94.75
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.66
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	94.62
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.49
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	94.43
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.42
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.21
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	94.16
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.12
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.03
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.02
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.74
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.68
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.43
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	93.3
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	93.29
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.28
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	92.68
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	92.42
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.4
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.33
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.07
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	92.04
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.02
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	92.0
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.98
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	91.76
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.7
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	91.6
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.31
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	91.18
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	90.68
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	90.02
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	89.84
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	89.76
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	89.66
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.63
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.56
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	88.85
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.34
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.27
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	85.33
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	85.31
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	84.39
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.29
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	82.02
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	81.77

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.6e-36  Score=225.07  Aligned_cols=142  Identities=27%  Similarity=0.364  Sum_probs=107.7

Q ss_pred             hhhhheeeeEEcCCCCC--cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           14 MLQLIEVISFSYPNLQD--IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~--~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      |+++.++ +++|+.+..  .+|+||||+|++||+++|+||||||||||+++|++...+                      
T Consensus         1 mI~i~nl-sk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~   79 (230)
T d1l2ta_           1 MIKLKNV-TKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK   79 (230)
T ss_dssp             CEEEEEE-EEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             CEEEEeE-EEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcch
Confidence            3556666 999975432  479999999999999999999999999999999863211                      


Q ss_pred             --ceeeeccccch--hhHh---------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 044538           70 --KLRIGRHSRHL--EDLL---------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV  124 (158)
Q Consensus        70 --~~~~~~~~~~~--~~~~---------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~  124 (158)
                        +..+|+.+|.+  .+.+                     ...+++.++++.+++.+...++++++|||||||||+||+|
T Consensus        80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAra  159 (230)
T d1l2ta_          80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA  159 (230)
T ss_dssp             HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred             hhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhh
Confidence              11256555532  1111                     1135677888999997643446679999999999999999


Q ss_pred             Hhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538          125 SMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR  156 (158)
Q Consensus       125 ~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~  156 (158)
                      ++.            +||+.+...+++.++++    +.|+|+||||++
T Consensus       160 L~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~  207 (230)
T d1l2ta_         160 LANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN  207 (230)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH
T ss_pred             hhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH
Confidence            875            69999999999888654    579999999975

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-36  Score=225.64  Aligned_cols=137  Identities=22%  Similarity=0.304  Sum_probs=88.1

Q ss_pred             hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------------------cceeeecccc
Q 044538           17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------------------QKLRIGRHSR   78 (158)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------------------~~~~~~~~~~   78 (158)
                      +.|+ +++|+.  ..+|+||||+|++||+++|+||||||||||+++|++...                  .+..+|+.+|
T Consensus         3 v~nv-~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q   79 (232)
T d2awna2           3 LQNV-TKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ   79 (232)
T ss_dssp             EEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred             EEEE-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeecc
Confidence            4455 888865  468999999999999999999999999999999986421                  1123566555


Q ss_pred             ch--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           79 HL--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        79 ~~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      .+  .+.++                  ..+++.++++.+++.+..+ +++++|||||||||+||++++.           
T Consensus        80 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-~~~~~LSGGqkQRvaiAraL~~~P~illlDEPt  158 (232)
T d2awna2          80 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  158 (232)
T ss_dssp             SCCC---------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEESTT
T ss_pred             ccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            42  11111                  2366889999999987665 5679999999999999999875           


Q ss_pred             -CCCHHHHHHHHHHHhh----cCCeEEEEeecCCC
Q 044538          128 -HLDTQSIVAVAVTLDE----FAGGVVLVSHDSRL  157 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~~  157 (158)
                       +||+.+..++++.+.+    .+.|+|+||||+++
T Consensus       159 s~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~  193 (232)
T d2awna2         159 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE  193 (232)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence             6999999888877754    46899999999864

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-36  Score=223.91  Aligned_cols=142  Identities=23%  Similarity=0.347  Sum_probs=109.9

Q ss_pred             hhhhheeeeEEcCCCCC--cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538           14 MLQLIEVISFSYPNLQD--IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------   69 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~--~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------   69 (158)
                      |+++.++ +++|+.+..  .+|+||||+|++||+++|+||||||||||+++|++....                      
T Consensus         1 mi~v~nl-sk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~   79 (240)
T d3dhwc1           1 MIKLSNI-TKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK   79 (240)
T ss_dssp             CEEEEEE-EEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHH
T ss_pred             CEEEEeE-EEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhh
Confidence            3556666 888976532  579999999999999999999999999999999863211                      


Q ss_pred             -ceeeeccccch--hhHh------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           70 -KLRIGRHSRHL--EDLL------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        70 -~~~~~~~~~~~--~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                       +..+|+.+|.+  .+.+                  ...+++.++++.+|+++..+ +++.+|||||||||+||+|++. 
T Consensus        80 ~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~-~~~~~LSGG~~QRvaiAraL~~~  158 (240)
T d3dhwc1          80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-SYPSNLSGGQKQRVAIARALASN  158 (240)
T ss_dssp             HHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTS-SCBSCCCHHHHHHHHHHHHHHTC
T ss_pred             hhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHhhhhccC
Confidence             11356655542  1111                  12367889999999987765 6679999999999999999875 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                                 +||+.+...+++.+++.    +.|||+||||+++
T Consensus       159 P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~  203 (240)
T d3dhwc1         159 PKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV  203 (240)
T ss_dssp             CSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHH
T ss_pred             CCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHH
Confidence                       79999999998888653    6899999999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=9.8e-37  Score=227.44  Aligned_cols=141  Identities=21%  Similarity=0.266  Sum_probs=109.5

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-----------------------cce
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-----------------------QKL   71 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-----------------------~~~   71 (158)
                      +++.++ +++|+.+...+|+||||+|++||+++|+||||||||||+++|++...                       .+.
T Consensus         4 i~v~nl-sk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr   82 (242)
T d1oxxk2           4 IIVKNV-SKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (242)
T ss_dssp             EEEEEE-EEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEeE-EEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence            345555 99997655578999999999999999999999999999999996321                       012


Q ss_pred             eeeccccch--hhHh------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           72 RIGRHSRHL--EDLL------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        72 ~~~~~~~~~--~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      .+|+.+|.+  .+.+                  ...+++.++++.+++.+..+ +++++|||||||||+||||++.    
T Consensus        83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-~~p~~LSGGqkQRvaiARaL~~~P~l  161 (242)
T d1oxxk2          83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKDPSL  161 (242)
T ss_dssp             CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhh-CChhhCCHHHHhHHHHHhHHhhcccc
Confidence            356555532  1111                  12467889999999987655 5679999999999999999875    


Q ss_pred             --------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                              +||+.+...+++.++++    +.|+|+||||+++
T Consensus       162 lllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~  203 (242)
T d1oxxk2         162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD  203 (242)
T ss_dssp             EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred             eeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHH
Confidence                    69999988888777553    6899999999764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=5.1e-36  Score=223.57  Aligned_cols=139  Identities=19%  Similarity=0.279  Sum_probs=108.2

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------c
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------K   70 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~   70 (158)
                      +++.++ +++|+.  ..+|+||||+|++||+++|+||||||||||+++|++...+                        +
T Consensus         4 i~v~nl-~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~   80 (240)
T d1g2912           4 VRLVDV-WKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD   80 (240)
T ss_dssp             EEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred             EEEEeE-EEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence            455555 888865  4589999999999999999999999999999999863210                        1


Q ss_pred             eeeeccccch--hhHh------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538           71 LRIGRHSRHL--EDLL------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---  127 (158)
Q Consensus        71 ~~~~~~~~~~--~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---  127 (158)
                      ..+|+.+|..  .+.+                  ...+++.++++.+++++..+ +++++|||||||||+||+|++.   
T Consensus        81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-~~p~~LSGGqkQRv~IAraL~~~P~  159 (240)
T d1g2912          81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-RKPRELSGGQRQRVALGRAIVRKPQ  159 (240)
T ss_dssp             SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-CCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred             ccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence            2355555432  1111                  12356889999999987655 5779999999999999999875   


Q ss_pred             ---------CCCHHHHHHHHHHHhh----cCCeEEEEeecCCC
Q 044538          128 ---------HLDTQSIVAVAVTLDE----FAGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---------~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~~  157 (158)
                               +||+.+...+++.+++    .+.|||+||||+++
T Consensus       160 iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~  202 (240)
T d1g2912         160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE  202 (240)
T ss_dssp             EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred             EEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHH
Confidence                     6999999988888755    36899999999864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.9e-36  Score=223.97  Aligned_cols=139  Identities=19%  Similarity=0.257  Sum_probs=108.0

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH   76 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~   76 (158)
                      +++.++ +++|++  ..+|+||||+|++||+++|+||||||||||+++|++...+                  +..+|+.
T Consensus         7 I~v~nl-sk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v   83 (239)
T d1v43a3           7 VKLENL-TKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV   83 (239)
T ss_dssp             EEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred             EEEEEE-EEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEE
Confidence            455565 999975  4689999999999999999999999999999999964221                  1235555


Q ss_pred             ccch--hhHh------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538           77 SRHL--EDLL------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------  127 (158)
Q Consensus        77 ~~~~--~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------  127 (158)
                      +|..  .+.+                  ...+++.++++.+++++..+ +++++|||||||||+||++++.         
T Consensus        84 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGq~QRvaiAraL~~~P~iLllDE  162 (239)
T d1v43a3          84 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYPAQLSGGQRQRVAVARAIVVEPDVLLMDE  162 (239)
T ss_dssp             EC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-SCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred             eechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHhhhccCCCceeecC
Confidence            5532  1111                  12367788999999987665 5679999999999999999875         


Q ss_pred             ---CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          128 ---HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ---~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                         +||+.+...+++.+++.    +.|+|+||||+++
T Consensus       163 Pts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~  199 (239)
T d1v43a3         163 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE  199 (239)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence               69999999988877654    6899999999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=6e-36  Score=221.67  Aligned_cols=139  Identities=21%  Similarity=0.256  Sum_probs=107.6

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeec
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGR   75 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~   75 (158)
                      |+++.++ +++|++   .+|+||||+|++||+++|+||||||||||+++|++...+                  +..+|+
T Consensus         1 mi~v~nl-sk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~   76 (229)
T d3d31a2           1 MIEIESL-SRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF   76 (229)
T ss_dssp             CEEEEEE-EEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEE
T ss_pred             CEEEEEE-EEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhccee
Confidence            3556666 999964   379999999999999999999999999999999964311                  112455


Q ss_pred             cccch--hhHhh---------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538           76 HSRHL--EDLLT---------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-----------  127 (158)
Q Consensus        76 ~~~~~--~~~~~---------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------  127 (158)
                      .+|.+  .+.++               ..+++.++++.+++.+..+ +++.+|||||||||+||||++.           
T Consensus        77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPt  155 (229)
T d3d31a2          77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-RNPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (229)
T ss_dssp             ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             eccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHh-CChhhCCHHHhcchhhhhhhhccCCceeecCCC
Confidence            44432  11111               1357888999999987765 6779999999999999999775           


Q ss_pred             -CCCHHHHHHHHHHHhh----cCCeEEEEeecCCC
Q 044538          128 -HLDTQSIVAVAVTLDE----FAGGVVLVSHDSRL  157 (158)
Q Consensus       128 -~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~~  157 (158)
                       +||+.+..++++.+++    .+.|||+||||+++
T Consensus       156 s~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~  190 (229)
T d3d31a2         156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE  190 (229)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHH
Confidence             6999999988887755    35799999999864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.3e-34  Score=216.44  Aligned_cols=143  Identities=17%  Similarity=0.225  Sum_probs=105.7

Q ss_pred             CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538           11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------   69 (158)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------   69 (158)
                      +++++++.++ ++.|++  ..+|+||||+|++||+++|+||||||||||+++|++...+                     
T Consensus         3 sd~~Lev~~l-~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~   79 (240)
T d1ji0a_           3 SDIVLEVQSL-HVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN   79 (240)
T ss_dssp             CSEEEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred             cceEEEEeeE-EEEECC--EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHH
Confidence            3567777776 999975  3589999999999999999999999999999999964211                     


Q ss_pred             ceeeeccccc--hhhHhh-----------------HHHHHHHHHHHc-CCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           70 KLRIGRHSRH--LEDLLT-----------------MEEAVHAKLRKF-GLPGHNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        70 ~~~~~~~~~~--~~~~~~-----------------~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      +..+++.++.  +++.++                 ..+.+..+++.+ ++.+..+ +++++|||||||||+||+|++.  
T Consensus        80 r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~LSGG~~Qrv~iAraL~~~P  158 (240)
T d1ji0a_          80 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLK-QLGGTLSGGEQQMLAIGRALMSRP  158 (240)
T ss_dssp             HTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTT-SBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred             HhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHh-CchhhCCHHHHHHHHHHHHHHhCC
Confidence            1123444332  111111                 123445556665 5655544 5679999999999999998775  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                                +||+.++.++++.++++   +.|||++|||+++
T Consensus       159 ~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~  201 (240)
T d1ji0a_         159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG  201 (240)
T ss_dssp             SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred             CEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence                      79999999988888654   5799999999754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.6e-34  Score=217.92  Aligned_cols=140  Identities=21%  Similarity=0.319  Sum_probs=106.5

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------------
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------------   69 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------------   69 (158)
                      +++.|+ +++|++.  .+|+||||+|++||+++|+||||||||||+++|++....                         
T Consensus         3 Lev~nl-~k~yg~~--~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~   79 (258)
T d1b0ua_           3 LHVIDL-HKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA   79 (258)
T ss_dssp             EEEEEE-EEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred             EEEEEE-EEEECCE--EEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence            566666 9999653  589999999999999999999999999999999864211                         


Q ss_pred             --------ceeeeccccch--h------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHH
Q 044538           70 --------KLRIGRHSRHL--E------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVM  120 (158)
Q Consensus        70 --------~~~~~~~~~~~--~------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~  120 (158)
                              +..+|+.+|.+  .      +..             ...+++.++++.+++.+...++++.+|||||||||+
T Consensus        80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~  159 (258)
T d1b0ua_          80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS  159 (258)
T ss_dssp             CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred             cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHH
Confidence                    01234443321  1      110             123567889999999765444567999999999999


Q ss_pred             HHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          121 FTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       121 ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                      ||++++.            +||+.+...+++.+++.   +.|||+||||+++
T Consensus       160 iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~  211 (258)
T d1b0ua_         160 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF  211 (258)
T ss_dssp             HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred             HHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHH
Confidence            9998775            79999999888887654   5799999999864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.3e-33  Score=212.74  Aligned_cols=141  Identities=21%  Similarity=0.237  Sum_probs=107.9

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------cee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~   72 (158)
                      ++++.++ +++|++.  .+|+||||++++||+++|+||||||||||+++|++....                     +..
T Consensus         4 iL~v~nl-sk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g   80 (254)
T d1g6ha_           4 ILRTENI-VKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG   80 (254)
T ss_dssp             EEEEEEE-EEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred             eEEEEEE-EEEECCe--EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence            5666666 9999753  589999999999999999999999999999999864211                     112


Q ss_pred             eeccccch--hhHhh-------------------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHH
Q 044538           73 IGRHSRHL--EDLLT-------------------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRV  119 (158)
Q Consensus        73 ~~~~~~~~--~~~~~-------------------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv  119 (158)
                      +++.+|..  .+.++                               ..+++.++++.+++....+ +++++|||||||||
T Consensus        81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~Qrv  159 (254)
T d1g6ha_          81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-RKAGELSGGQMKLV  159 (254)
T ss_dssp             EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHH
T ss_pred             CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhcc-CchhhCCcHHHHHH
Confidence            44444321  11000                               1245677889999987654 67899999999999


Q ss_pred             HHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538          120 MFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI  158 (158)
Q Consensus       120 ~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~  158 (158)
                      +||++++.            +||+....++++.+++.   +.|||+||||++++
T Consensus       160 ~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~  213 (254)
T d1g6ha_         160 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV  213 (254)
T ss_dssp             HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred             HHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence            99998875            69999998888877554   67999999999874

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.7e-33  Score=209.02  Aligned_cols=139  Identities=17%  Similarity=0.224  Sum_probs=105.5

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeec
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGR   75 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~   75 (158)
                      +.+.++ +++|+..  .+|+|+||+|++||++||+||||||||||+++|++...+                   +..+++
T Consensus         3 I~v~nl-~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~   79 (238)
T d1vpla_           3 VVVKDL-RKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY   79 (238)
T ss_dssp             EEEEEE-EEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred             EEEEeE-EEEECCE--EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeE
Confidence            344455 8999753  589999999999999999999999999999999964321                   112444


Q ss_pred             cccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538           76 HSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------  127 (158)
Q Consensus        76 ~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------  127 (158)
                      .++..  .      +.+            ...+.++++++.+++.+... +++.+||||||||++||++++.        
T Consensus        80 vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lSgG~~qrv~iA~al~~~p~illLD  158 (238)
T d1vpla_          80 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-DRVSTYSKGMVRKLLIARALMVNPRLAILD  158 (238)
T ss_dssp             ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-SBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             eeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHh-hhhhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            43321  1      111            12355677889999987655 5679999999999999998875        


Q ss_pred             ----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538          128 ----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~  157 (158)
                          +||+.++..+++.+++.   +.|||++|||+++
T Consensus       159 EPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~  195 (238)
T d1vpla_         159 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLE  195 (238)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                79999999888888654   5799999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.98  E-value=1.6e-32  Score=206.51  Aligned_cols=142  Identities=25%  Similarity=0.337  Sum_probs=102.6

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~   73 (158)
                      -+++.++ +|+|++...++|+||||+|++||++||+||||||||||+++|++...+.                    ..+
T Consensus        13 ~I~~~nv-sf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i   91 (253)
T d3b60a1          13 DLEFRNV-TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV   91 (253)
T ss_dssp             CEEEEEE-EECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred             EEEEEEE-EEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheE
Confidence            3677776 9999877667999999999999999999999999999999998643211                    113


Q ss_pred             eccccch-------hhHh-------hHHHHHHHHHHHcC-----------CCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538           74 GRHSRHL-------EDLL-------TMEEAVHAKLRKFG-----------LPGHNHLTPIANLSGGQKVRVMFTLVSMY-  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~-------~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-  127 (158)
                      ++.+|..       ....       ...+++.++++..+           ++.... ..+.+|||||||||+||||++. 
T Consensus        92 ~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~-~~~~~LSGGqkQRvaiARal~~~  170 (253)
T d3b60a1          92 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRD  170 (253)
T ss_dssp             EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCC-TTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             EEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhc-CCCCCcCHHHHHHHHHHHHHhcC
Confidence            4433321       0010       01233444443332           333333 2457899999999999999875 


Q ss_pred             -----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 -----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 -----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                                 +||+.+...+++.++++  +.|+|+||||++.
T Consensus       171 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~  213 (253)
T d3b60a1         171 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST  213 (253)
T ss_dssp             CSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred             CCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHH
Confidence                       69999999999998765  5799999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.9e-32  Score=203.71  Aligned_cols=140  Identities=22%  Similarity=0.300  Sum_probs=99.6

Q ss_pred             hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538           16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR   75 (158)
Q Consensus        16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~   75 (158)
                      ++.++ +|+|+....++|+||||+|++||++||+||||||||||+++|++....                    +..+++
T Consensus         3 ~~~nv-sf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (241)
T d2pmka1           3 TFRNI-RFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV   81 (241)
T ss_dssp             EEEEE-EEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             EEEEE-EEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence            34455 999987666789999999999999999999999999999999864321                    112444


Q ss_pred             cccch-------hhHhh------HHHHHHHHHHHcCC-----------CCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538           76 HSRHL-------EDLLT------MEEAVHAKLRKFGL-----------PGHNHLTPIANLSGGQKVRVMFTLVSMY----  127 (158)
Q Consensus        76 ~~~~~-------~~~~~------~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGqkqrv~ia~~~l~----  127 (158)
                      .+|..       .+.+.      ..+++...++..++           +.... ..+..|||||||||+||||++.    
T Consensus        82 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~-~~g~~LSGGq~QRvalARal~~~p~i  160 (241)
T d2pmka1          82 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKI  160 (241)
T ss_dssp             ECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCS-TTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred             EecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcC-CCCCccCHHHHHHHhhhhhhhcccch
Confidence            44431       11110      01233333333322           11122 2347899999999999999875    


Q ss_pred             --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                              +||+.+...+++.+++.  +.|+|+||||++.
T Consensus       161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~  200 (241)
T d2pmka1         161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST  200 (241)
T ss_dssp             EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG
T ss_pred             hhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence                    69999999999999775  4699999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=2.6e-32  Score=205.36  Aligned_cols=142  Identities=25%  Similarity=0.311  Sum_probs=104.4

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      -+++.++ +|+|++...++|+||||+|++|+++||+||||||||||+++|++....                    +..+
T Consensus        16 ~I~~~nv-sf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i   94 (255)
T d2hyda1          16 RIDIDHV-SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI   94 (255)
T ss_dssp             CEEEEEE-EECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred             EEEEEEE-EEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhee
Confidence            4677776 999987766799999999999999999999999999999999864221                    1123


Q ss_pred             eccccch-------hhHhh------HHHHHHHHHHHcCCCC-----------CCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPG-----------HNHLTPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~-----------~~~~~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ++.+|..       .++..      ..+++.++++..++.+           ... ....+||||||||++||||++.  
T Consensus        95 ~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~-~~g~~LSgGq~QRi~iARal~~~p  173 (255)
T d2hyda1          95 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNP  173 (255)
T ss_dssp             EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCC-GGGTTSCHHHHHHHHHHHHHHHCC
T ss_pred             eeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhc-CCCCCcCHHHHHHHHHHHHHhcCC
Confidence            4444321       11111      1345566666665532           111 1236799999999999999875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL  157 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~  157 (158)
                                +||+.+...+++.+.+.  +.|+|+||||++.
T Consensus       174 ~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~  215 (255)
T d2hyda1         174 PILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST  215 (255)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                      69999999999999776  4699999999864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.97  E-value=5.3e-33  Score=207.95  Aligned_cols=141  Identities=23%  Similarity=0.291  Sum_probs=99.6

Q ss_pred             hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538           14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI   73 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~   73 (158)
                      |+++.++ +|+|++.. ++|+||||+|++||++||+||||||||||+++|++...+                    +..+
T Consensus         1 mle~knv-sf~Y~~~~-~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i   78 (242)
T d1mv5a_           1 MLSARHV-DFAYDDSE-QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI   78 (242)
T ss_dssp             CEEEEEE-EECSSSSS-CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred             CEEEEEE-EEECCCCC-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhhe
Confidence            4556666 99997653 589999999999999999999999999999999864321                    1124


Q ss_pred             eccccch-------hhHh-------hHHHHHHHHHHHcCCCCCCCC----------CCCCCCChHHHHHHHHHHHHhh--
Q 044538           74 GRHSRHL-------EDLL-------TMEEAVHAKLRKFGLPGHNHL----------TPIANLSGGQKVRVMFTLVSMY--  127 (158)
Q Consensus        74 ~~~~~~~-------~~~~-------~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~ia~~~l~--  127 (158)
                      ++.+|..       .+..       ...+.+.+.++..++......          .+..+|||||||||+||||++.  
T Consensus        79 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p  158 (242)
T d1mv5a_          79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP  158 (242)
T ss_dssp             CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            4544432       1111       012344445555444322111          1235799999999999999875  


Q ss_pred             ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538          128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR  156 (158)
Q Consensus       128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~  156 (158)
                                +||+.+...+++.+++.  +.|+|+||||++
T Consensus       159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~  199 (242)
T d1mv5a_         159 KILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS  199 (242)
T ss_dssp             SEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHH
T ss_pred             CEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence                      69998888888888765  579999999975

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.5e-32  Score=203.87  Aligned_cols=141  Identities=26%  Similarity=0.391  Sum_probs=98.7

Q ss_pred             hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538           14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR   72 (158)
Q Consensus        14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~   72 (158)
                      .+++.++ +|+|++. ...+|+||||+|++||+++|+||||||||||+++|++...+                    +..
T Consensus        11 ~I~~~nv-sf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~   89 (251)
T d1jj7a_          11 LVQFQDV-SFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ   89 (251)
T ss_dssp             CEEEEEE-EECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred             eEEEEEE-EEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH
Confidence            4677776 9999764 34689999999999999999999999999999999864321                    112


Q ss_pred             eeccccch-------hhHhh-------HHHH---------HHHHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538           73 IGRHSRHL-------EDLLT-------MEEA---------VHAKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY  127 (158)
Q Consensus        73 ~~~~~~~~-------~~~~~-------~~~~---------~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~  127 (158)
                      +++.+|..       .+...       ....         ..+.++.+  +++.... +.+.+|||||||||+||||++.
T Consensus        90 i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~-~~~~~LSGGqkQRvaiARal~~  168 (251)
T d1jj7a_          90 VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVD-EAGSQLSGGQRQAVALARALIR  168 (251)
T ss_dssp             EEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCC-SSCSSSCHHHHHHHHHHHHHTT
T ss_pred             hhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHh-ccCccCChhHceEEEEeecccc
Confidence            34443321       11100       0011         11223333  3333333 3457899999999999999875


Q ss_pred             ------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538          128 ------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR  156 (158)
Q Consensus       128 ------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~  156 (158)
                                  +||+.+...+++.+.+.    +.|+|+||||++
T Consensus       169 ~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~  213 (251)
T d1jj7a_         169 KPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS  213 (251)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH
T ss_pred             CCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH
Confidence                        69999999999988654    579999999975

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=5.6e-32  Score=201.21  Aligned_cols=130  Identities=24%  Similarity=0.288  Sum_probs=99.4

Q ss_pred             eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------------------cceeeeccccch--h
Q 044538           22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------------------QKLRIGRHSRHL--E   81 (158)
Q Consensus        22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------------------~~~~~~~~~~~~--~   81 (158)
                      .++|++.   .+ ||||++. +|+++|+||||||||||+++|++...                  .+..+|+.+|..  .
T Consensus         8 ~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~   82 (240)
T d2onka1           8 EKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALF   82 (240)
T ss_dssp             EEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred             EEEECCE---EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhc
Confidence            5666542   23 7999995 68999999999999999999996432                  122356655542  1


Q ss_pred             hHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHH
Q 044538           82 DLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQS  133 (158)
Q Consensus        82 ~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~  133 (158)
                      +.+                ..++++.++++.+|+.+..+ +++++|||||||||+||||++.            +||+..
T Consensus        83 ~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~-~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~  161 (240)
T d2onka1          83 PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT  161 (240)
T ss_dssp             TTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred             ccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhh-CChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHH
Confidence            111                12367889999999987665 5679999999999999999875            699999


Q ss_pred             HHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          134 IVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       134 ~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      +..+++.+++.    +.|||+||||+++
T Consensus       162 ~~~i~~~i~~l~~~~g~tvi~vtHd~~~  189 (240)
T d2onka1         162 KGVLMEELRFVQREFDVPILHVTHDLIE  189 (240)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEESCHHH
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            99998887554    6799999999754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.1e-31  Score=195.23  Aligned_cols=125  Identities=27%  Similarity=0.307  Sum_probs=94.2

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceee-------------------eccccc--------hhhHh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRI-------------------GRHSRH--------LEDLL   84 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~-------------------~~~~~~--------~~~~~   84 (158)
                      +|++|||+|++||++||+||||||||||+++|++.......+                   ++..+.        ....+
T Consensus        14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   93 (231)
T d1l7vc_          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL   93 (231)
T ss_dssp             TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHH
T ss_pred             eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHh
Confidence            689999999999999999999999999999999743221111                   111110        01111


Q ss_pred             -------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------------------CCCHHHHHHHH
Q 044538           85 -------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------------------HLDTQSIVAVA  138 (158)
Q Consensus        85 -------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------------------~lD~~~~~~l~  138 (158)
                             ...+.+.++++.+++.+... +++.+|||||||||+||++++.                   +||+.+...+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~  172 (231)
T d1l7vc_          94 TLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD  172 (231)
T ss_dssp             HHHCSCTTCHHHHHHHHHHTTCTTTTT-SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHH
T ss_pred             hhccchhhHHHHHHHHHHhcCCHhHhC-cChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHH
Confidence                   11356778899999988765 5679999999999999998751                   69999988888


Q ss_pred             HHHhhc---CCeEEEEeecCCC
Q 044538          139 VTLDEF---AGGVVLVSHDSRL  157 (158)
Q Consensus       139 ~~l~~~---~~tvi~vtHd~~~  157 (158)
                      +.+++.   +.|||+||||+++
T Consensus       173 ~~i~~l~~~g~tii~vtHdl~~  194 (231)
T d1l7vc_         173 KILSALCQQGLAIVMSSHDLNH  194 (231)
T ss_dssp             HHHHHHHHTTCEEEECCCCHHH
T ss_pred             HHHHHHHhCCCEEEEEeCCHHH
Confidence            777654   5799999999764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=3.7e-30  Score=187.54  Aligned_cols=137  Identities=21%  Similarity=0.280  Sum_probs=96.3

Q ss_pred             hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------ceeeeccccc
Q 044538           15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------KLRIGRHSRH   79 (158)
Q Consensus        15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------~~~~~~~~~~   79 (158)
                      +++.++ ++.|+   +++|+|+||+|++|++++|+||||||||||+++|++...+               +..+++.++.
T Consensus         3 lev~~l-s~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~   78 (200)
T d1sgwa_           3 LEIRDL-SVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE   78 (200)
T ss_dssp             EEEEEE-EEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred             EEEEEE-EEEeC---CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeec
Confidence            445555 88884   2589999999999999999999999999999999964321               1112332221


Q ss_pred             h--------hhHhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CC
Q 044538           80 L--------EDLLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HL  129 (158)
Q Consensus        80 ~--------~~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~l  129 (158)
                      .        .+.+.          ..+++.+.++.+++.+. . +++.+||||||||++||++++.            +|
T Consensus        79 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gL  156 (200)
T d1sgwa_          79 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-K-KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI  156 (200)
T ss_dssp             CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-T-SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTS
T ss_pred             ccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCccc-c-cccCcCCCcHHHHHHHHHHHhcCCCEEEEcCccccc
Confidence            0        11111          12456678888887653 2 4578999999999999988765            69


Q ss_pred             CHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538          130 DTQSIVAVAVTLDEF----AGGVVLVSHDSRL  157 (158)
Q Consensus       130 D~~~~~~l~~~l~~~----~~tvi~vtHd~~~  157 (158)
                      |+.++..+++.+.+.    +.+||.++||+++
T Consensus       157 D~~~~~~i~~~l~~~~~~~~~~ii~~~~~l~~  188 (200)
T d1sgwa_         157 DEDSKHKVLKSILEILKEKGIVIISSREELSY  188 (200)
T ss_dssp             CTTTHHHHHHHHHHHHHHHSEEEEEESSCCTT
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEEechhhh
Confidence            998888888777554    3455666666543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=7.3e-28  Score=183.38  Aligned_cols=127  Identities=20%  Similarity=0.232  Sum_probs=86.0

Q ss_pred             CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------eeeeccccch-------hhHhh-----HHHHH
Q 044538           30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------LRIGRHSRHL-------EDLLT-----MEEAV   90 (158)
Q Consensus        30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------~~~~~~~~~~-------~~~~~-----~~~~~   90 (158)
                      .++|+||||+|++||++||+||||||||||+++|++.....       ..+++.+|..       .+.+.     .....
T Consensus        49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~  128 (281)
T d1r0wa_          49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRY  128 (281)
T ss_dssp             CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHHH
T ss_pred             CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccchHH
Confidence            36899999999999999999999999999999999754321       1234443321       11110     01222


Q ss_pred             HHHHHHcC-------CCCCCC---CCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHH-hhc--C
Q 044538           91 HAKLRKFG-------LPGHNH---LTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL-DEF--A  145 (158)
Q Consensus        91 ~~~l~~~~-------l~~~~~---~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l-~~~--~  145 (158)
                      ...++...       +.....   .....+|||||||||+||||++.            +||+.+...+++.+ ...  +
T Consensus       129 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~  208 (281)
T d1r0wa_         129 KSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN  208 (281)
T ss_dssp             HHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTT
T ss_pred             HHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCC
Confidence            33333322       221111   12346799999999999999875            79999999988764 332  4


Q ss_pred             CeEEEEeecCC
Q 044538          146 GGVVLVSHDSR  156 (158)
Q Consensus       146 ~tvi~vtHd~~  156 (158)
                      .|+|+|||+++
T Consensus       209 ~tvi~itH~~~  219 (281)
T d1r0wa_         209 KTRILVTSKME  219 (281)
T ss_dssp             SEEEEECSCHH
T ss_pred             CEEEEEechHH
Confidence            79999999864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.25  E-value=1.2e-11  Score=85.81  Aligned_cols=48  Identities=6%  Similarity=-0.147  Sum_probs=37.2

Q ss_pred             CCCChHHHHHHHHHHHHhhC--------------CCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538          109 ANLSGGQKVRVMFTLVSMYH--------------LDTQSIVAVAVTLDEFAGGVVLVSHDSR  156 (158)
Q Consensus       109 ~~LSgGqkqrv~ia~~~l~~--------------lD~~~~~~l~~~l~~~~~tvi~vtHd~~  156 (158)
                      .++|+|+++|.+++++...+              .+......+.+.+++.+.++|+++|+..
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~  141 (178)
T d1ye8a1          80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRD  141 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSC
T ss_pred             hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHH
Confidence            36899999999998765542              2355667777888877889999999865

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=3.7e-09  Score=78.99  Aligned_cols=51  Identities=24%  Similarity=0.318  Sum_probs=40.1

Q ss_pred             CCCCCChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538          107 PIANLSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL  157 (158)
Q Consensus       107 ~~~~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~  157 (158)
                      .+..+|+|||+...++..+..                +|++..+..+.+.+++..  .-+|++||+..+
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~  284 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV  284 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHH
Confidence            356899999999877543321                689999999999997764  469999999765

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=5.7e-09  Score=72.48  Aligned_cols=31  Identities=19%  Similarity=0.223  Sum_probs=27.8

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +.+.+|++.+| +++|+|||||||||++.+|.
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            67888888876 99999999999999999986

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.19  E-value=3.5e-07  Score=63.39  Aligned_cols=23  Identities=35%  Similarity=0.564  Sum_probs=21.3

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      |.+++|+||||||||||.+.+..
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            88999999999999999998863

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=4.6e-07  Score=61.23  Aligned_cols=21  Identities=29%  Similarity=0.256  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++|+|++|||||||++.|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            789999999999999998874

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.12  E-value=4.9e-07  Score=61.44  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=22.5

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .|+++.|.||+||||||+.+.++..
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999999743

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=6.9e-07  Score=68.66  Aligned_cols=50  Identities=20%  Similarity=0.305  Sum_probs=38.8

Q ss_pred             CCCCCChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhcC---CeEEEEeecCC
Q 044538          107 PIANLSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEFA---GGVVLVSHDSR  156 (158)
Q Consensus       107 ~~~~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~~---~tvi~vtHd~~  156 (158)
                      +...||||||.++++|..+..                +||+..+..+.+.|.+..   .-+|+|||+..
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~  397 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT  397 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            446789999999888644321                799999999999987653   34999999864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.02  E-value=1e-06  Score=59.72  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=22.6

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+|-++.|+|++||||||+.+.|+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999999874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1e-06  Score=59.60  Aligned_cols=26  Identities=19%  Similarity=0.277  Sum_probs=22.7

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++.++.|+||+||||||+.+.|+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35778999999999999999999754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.02  E-value=1.3e-06  Score=59.20  Aligned_cols=25  Identities=28%  Similarity=0.537  Sum_probs=22.5

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++|-.++|+||+||||||+.+.|+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            5677899999999999999999974

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.7e-06  Score=61.33  Aligned_cols=24  Identities=33%  Similarity=0.430  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|.++.|+||||||||||.+.+.-
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999988863

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.8e-06  Score=58.63  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+.|+||+|+|||||++.++.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            4578999999999999998874

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.93  E-value=1.4e-06  Score=59.26  Aligned_cols=22  Identities=50%  Similarity=0.602  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.++|+||.|||||||.+.|+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999984

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.92  E-value=2.3e-06  Score=58.13  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.0

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+++|+|++|||||||++.+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            4789999999999999987653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=2.4e-06  Score=56.81  Aligned_cols=21  Identities=38%  Similarity=0.553  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.|+||+||||||+.+.|+-
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999999974

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.89  E-value=3.1e-06  Score=57.12  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=21.3

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+++.|.|++||||||+.+.|+..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999999753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.89  E-value=3e-06  Score=57.64  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=20.7

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++++|.|+.||||||+.+.|+.
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999874

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.86  E-value=2.8e-06  Score=58.51  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++||.||+|||||||.+.|..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998863

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.85  E-value=3.1e-06  Score=57.04  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+||+||||||+.+.|+-
T Consensus         6 ~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999999974

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.82  E-value=3.6e-06  Score=55.85  Aligned_cols=21  Identities=19%  Similarity=0.287  Sum_probs=18.5

Q ss_pred             CEEEEECCCCCCcchHHHHHH
Q 044538           44 TCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++.|.||+||||||+.+.|.
T Consensus         3 klIii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999999775

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=4.3e-06  Score=60.12  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=22.4

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|++.+++|+||+|||||+|.|.+
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHST
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcc
Confidence            699999999999999999999974

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.79  E-value=4.3e-06  Score=56.14  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++.|.||+||||||+.+.|+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999743

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2.3e-06  Score=58.99  Aligned_cols=24  Identities=25%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|.++.|+|++||||||+.+.|+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999974

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=2.7e-05  Score=55.32  Aligned_cols=27  Identities=26%  Similarity=0.261  Sum_probs=19.1

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++=+.-.+++++||+|+||||.+-=|+
T Consensus         4 ~~~~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           4 VEGKAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             CCSCTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            333334689999999999998653344

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=8.7e-06  Score=57.27  Aligned_cols=21  Identities=19%  Similarity=0.335  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++||.|++||||||+.+.|+.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998863

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.4e-05  Score=57.73  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=23.4

Q ss_pred             eeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +|++++ +.+.++.|.|||.+||||++|.++
T Consensus        33 Ndi~l~-~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          33 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence            444443 234689999999999999999886

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=8.4e-06  Score=56.50  Aligned_cols=21  Identities=43%  Similarity=0.558  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -++|+||+|||||||.+.+..
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999998864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.66  E-value=8.6e-06  Score=56.41  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.4

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ..+++|+||.||||||+.+.|+-
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45889999999999999999973

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.66  E-value=1.2e-05  Score=55.51  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=22.2

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++|-.+.|+||.||||||+.+.|+.
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            4677889999999999999999984

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.5e-05  Score=55.01  Aligned_cols=26  Identities=35%  Similarity=0.532  Sum_probs=23.4

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++|+++.|.||+|||||||+.-++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999877663

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.3e-05  Score=55.39  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=19.6

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+.|+||||+|||||++.|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998763

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.63  E-value=1.1e-05  Score=57.28  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++|+|+.|||||||++.+..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            689999999999999998863

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.62  E-value=9.6e-06  Score=56.34  Aligned_cols=26  Identities=15%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +..+.++.|+||.||||||+.+.|+-
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999999974

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=1.1e-05  Score=56.11  Aligned_cols=20  Identities=40%  Similarity=0.564  Sum_probs=18.1

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++|+||||||||||.+.+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999998864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=8.6e-06  Score=56.57  Aligned_cols=24  Identities=17%  Similarity=0.203  Sum_probs=21.0

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +-.++.|+||.||||||+.+.|+.
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999974

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.60  E-value=1.2e-05  Score=54.70  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.1

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+.|+|++||||||+.+.++.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999974

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.60  E-value=0.0003  Score=49.56  Aligned_cols=23  Identities=26%  Similarity=0.252  Sum_probs=18.1

Q ss_pred             CCCEEEEECCCCCCcchHHHHHH
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ...++.++||+|+||||.+-=|+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34678999999999998764444

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.58  E-value=1.4e-05  Score=54.00  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=18.8

Q ss_pred             EEEECCCCCCcchHHHHHHhh
Q 044538           46 VAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +.|+|++||||||+.+.++..
T Consensus         3 I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999999743

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.54  E-value=1.1e-05  Score=55.85  Aligned_cols=22  Identities=36%  Similarity=0.507  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+.|+|||||++.|.+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4899999999999999999863

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.54  E-value=5.4e-06  Score=59.82  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|++.+++|+||+|||||+|.|.+
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             ccceEEEECCCCccHHHHHHhhcc
Confidence            688999999999999999999974

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.53  E-value=1.6e-05  Score=56.33  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=18.5

Q ss_pred             CCCEEEEECCCCCCcchHHHHHH
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++.+++++||+|+||||.+-=|+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            57899999999999998743333

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.53  E-value=1.4e-05  Score=55.14  Aligned_cols=21  Identities=29%  Similarity=0.366  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++.|+||.||||||+.+.|+-
T Consensus         5 ~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999873

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.52  E-value=3.2e-05  Score=55.37  Aligned_cols=27  Identities=37%  Similarity=0.486  Sum_probs=22.3

Q ss_pred             eEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           37 DMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        37 sl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      |+++. ++++.|.|||.+||||++|.++
T Consensus        30 di~~~-~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          30 DLEMA-HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEES-SCEEEEESCSSSSHHHHHHHHH
T ss_pred             eEEeC-CcEEEEECCCccccchhhhhhH
Confidence            44444 4689999999999999999876

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.51  E-value=1.8e-05  Score=53.86  Aligned_cols=23  Identities=17%  Similarity=0.111  Sum_probs=19.7

Q ss_pred             CEEEEECCCCCCcchHHHHHHhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++.|.|++||||||+.+.|+..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36788999999999999999743

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=2.1e-05  Score=53.22  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=18.3

Q ss_pred             EEEECCCCCCcchHHHHHHhh
Q 044538           46 VAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +.|+|+.||||||+.+.++..
T Consensus         4 IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            568899999999999999743

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.49  E-value=2.3e-05  Score=53.35  Aligned_cols=21  Identities=14%  Similarity=0.310  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.|+||.||||||+.+.|+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999999874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.48  E-value=2.1e-05  Score=54.30  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++||.|+.||||||+.+.+.
T Consensus         5 IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999885

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.5e-05  Score=53.90  Aligned_cols=21  Identities=19%  Similarity=0.238  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++.|+||.||||||..+.|+-
T Consensus         3 iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            679999999999999999873

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=3.1e-05  Score=53.02  Aligned_cols=25  Identities=28%  Similarity=0.186  Sum_probs=21.5

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++-+++.++|++||||||+.+-+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5568999999999999999987753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=0.00014  Score=55.29  Aligned_cols=28  Identities=29%  Similarity=0.621  Sum_probs=23.9

Q ss_pred             eEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           37 DMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        37 sl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+++.++.+.+|+|||||||||++.+|+
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            4556667799999999999999999884

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.44  E-value=1.8e-05  Score=56.32  Aligned_cols=28  Identities=29%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             eEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           37 DMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        37 sl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++.-.+..+++++||+|+||||.+-=|+
T Consensus         5 ~~~~~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           5 NVPPEPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3344455688999999999998753333

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.41  E-value=3.4e-05  Score=55.54  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=21.1

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhhh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ...+.|.||.|||||||.+.++...
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3458899999999999999998643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.40  E-value=3.4e-05  Score=54.16  Aligned_cols=20  Identities=40%  Similarity=0.718  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++|-||.||||||..+.|+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La   24 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIA   24 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57888999999999999997

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.39  E-value=3.6e-05  Score=52.67  Aligned_cols=21  Identities=14%  Similarity=0.317  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.|+||.||||||+.+.|+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999984

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=4.2e-05  Score=50.43  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|++|+|||||++.+.+
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            468999999999999999875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.36  E-value=4.3e-05  Score=52.21  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.|+||.||||||+.+.|+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999974

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.35  E-value=4.5e-05  Score=50.36  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|||||||++.+..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            368999999999999998874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=4.3e-05  Score=53.37  Aligned_cols=20  Identities=35%  Similarity=0.610  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++|.||.||||||+.+.|+
T Consensus         5 iI~I~GppGSGKgT~ak~La   24 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMA   24 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            88999999999999999887

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.35  E-value=3e-05  Score=52.40  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|++|||||||++.+.+
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999874

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.35  E-value=4.2e-05  Score=53.62  Aligned_cols=20  Identities=30%  Similarity=0.572  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++||+|+.||||||+.+++.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999885

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=4.7e-05  Score=52.73  Aligned_cols=21  Identities=24%  Similarity=0.369  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++.++|.+||||||+.+.|+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999974

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=4.1e-05  Score=52.18  Aligned_cols=21  Identities=14%  Similarity=0.324  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.|+||.||||||..+.|+-
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999973

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.32  E-value=5e-05  Score=50.41  Aligned_cols=20  Identities=30%  Similarity=0.507  Sum_probs=18.6

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++|+|++|||||||++.+..
T Consensus         8 I~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.31  E-value=5.4e-05  Score=51.13  Aligned_cols=21  Identities=48%  Similarity=0.517  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.|++
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999975

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=5.3e-05  Score=52.50  Aligned_cols=22  Identities=36%  Similarity=0.717  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+.|||||||++.+.+.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6799999999999999999753

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.29  E-value=5.1e-05  Score=56.25  Aligned_cols=21  Identities=14%  Similarity=0.400  Sum_probs=16.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++||.|++||||||+.+.+..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            799999999999999988763

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=6.1e-05  Score=53.06  Aligned_cols=25  Identities=36%  Similarity=0.525  Sum_probs=22.9

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHH
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++|+++.|.||.|||||||..-++
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            8899999999999999999987665

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=6.6e-05  Score=52.53  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|.+++|-|+-||||||+.+.|..
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999998874

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.25  E-value=6.5e-05  Score=51.12  Aligned_cols=22  Identities=50%  Similarity=0.483  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++|+|+.|+|||||++.+.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.25  E-value=4.8e-05  Score=51.70  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+.|+|||||++.|.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.25  E-value=6.8e-05  Score=51.94  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+||.||||||+.+.|+.
T Consensus         8 rIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999984

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=7.3e-05  Score=53.42  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ..+.|.||+|+||||+.++++.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999984

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.24  E-value=4.4e-05  Score=52.20  Aligned_cols=20  Identities=35%  Similarity=0.516  Sum_probs=18.5

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +||+|+.++|||||++.|++
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            69999999999999999964

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=7.3e-05  Score=51.09  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.|+||.||||||+.+.|+-
T Consensus         4 rIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999974

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.22  E-value=4.5e-05  Score=52.61  Aligned_cols=22  Identities=27%  Similarity=0.265  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -+++|-|+.||||||+++.|..
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999974

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.22  E-value=5.7e-05  Score=53.57  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=14.2

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHH
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +...+++++||+|+||||.+-=|+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345678999999999998743333

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.21  E-value=7.1e-05  Score=52.97  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.|.||+|+||||+.++++.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999999874

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=8.1e-05  Score=52.46  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.2

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++|.+++|-|+-||||||+.+.|..
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999998864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.20  E-value=7.8e-05  Score=52.57  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=22.4

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+|-++-++|.+||||||+.+.+..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999988863

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=8.1e-05  Score=50.30  Aligned_cols=22  Identities=45%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++|+|..|+|||||++.|.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999853

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=7.9e-05  Score=52.29  Aligned_cols=20  Identities=40%  Similarity=0.542  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++||+|+.||||||..+++.
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            68999999999999999886

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=9.1e-05  Score=50.49  Aligned_cols=22  Identities=45%  Similarity=0.522  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+||+|+.|+|||||++.+.+.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4799999999999999999753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0001  Score=52.28  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=23.4

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++|.++.|.||+|||||||.-.++.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999999876653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=8.4e-05  Score=55.60  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++||.|++||||||+.+.|..
T Consensus        82 iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHH
Confidence            799999999999999998864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.14  E-value=0.00012  Score=51.22  Aligned_cols=25  Identities=20%  Similarity=0.401  Sum_probs=22.2

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHH
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++|+++.|.|++|+|||||..-++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8899999999999999999975443

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.13  E-value=0.00012  Score=51.86  Aligned_cols=27  Identities=19%  Similarity=0.213  Sum_probs=23.8

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++|.++.|.||+|||||||+.-++..
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999999998776643

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.12  E-value=0.0001  Score=52.26  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=22.4

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHH
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++|+++.|.||+|||||||.--++
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999999976554

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.11  E-value=0.00011  Score=49.21  Aligned_cols=21  Identities=14%  Similarity=0.335  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|||||||++.+.+
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            378999999999999999874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.0001  Score=52.37  Aligned_cols=21  Identities=33%  Similarity=0.632  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.+.||.|+||||+.++++.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            368999999999999999984

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.0001  Score=52.07  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=18.2

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.|.||+|+||||+.++++.
T Consensus        36 lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHH
Confidence            68999999999999999873

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.10  E-value=0.00011  Score=52.39  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=20.7

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.++.|.||.|+|||||++.++.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            457899999999999999987763

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00012  Score=51.64  Aligned_cols=24  Identities=33%  Similarity=0.412  Sum_probs=22.3

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|.++++=|+-||||||+.+.+..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            699999999999999999999874

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=5.7e-05  Score=53.50  Aligned_cols=24  Identities=29%  Similarity=0.302  Sum_probs=21.3

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++++|-|+-||||||+++.|+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999999874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.0001  Score=55.54  Aligned_cols=23  Identities=17%  Similarity=0.278  Sum_probs=20.3

Q ss_pred             CCCEEEEECCCCCCcchHHHHHH
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ..-++||+||.|||||||++.+.
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHH
Confidence            45679999999999999999886

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00011  Score=48.81  Aligned_cols=22  Identities=50%  Similarity=0.560  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++++|+.|+|||||++.+.+.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999854

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.06  E-value=0.00013  Score=51.23  Aligned_cols=25  Identities=12%  Similarity=0.248  Sum_probs=23.0

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHH
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++|+++.|.|++|+|||||.--++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8999999999999999999977665

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00014  Score=50.52  Aligned_cols=21  Identities=38%  Similarity=0.373  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            579999999999999999875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.04  E-value=0.00013  Score=54.33  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=19.6

Q ss_pred             CCEEEEECCCCCCcchHHHHHHh
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.-+.++||+|||||+|.+.++.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            34557899999999999999984

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.04  E-value=8.5e-05  Score=50.53  Aligned_cols=20  Identities=35%  Similarity=0.493  Sum_probs=18.7

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +||+|..++|||||++.|++
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            79999999999999999974

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.02  E-value=0.00015  Score=48.47  Aligned_cols=20  Identities=30%  Similarity=0.562  Sum_probs=18.1

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++.+..
T Consensus         5 i~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            68999999999999998864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.00  E-value=0.00015  Score=48.78  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|..|||||||++-+.+
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999998875

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.98  E-value=0.0002  Score=51.89  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=27.9

Q ss_pred             ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .|+++..=+.+|+++.|.|++|+|||||+.-++.
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4666654589999999999999999999776653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.95  E-value=0.0002  Score=48.42  Aligned_cols=27  Identities=19%  Similarity=0.189  Sum_probs=24.1

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ..++|.+++|-|+=|||||||.|.++.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence            457899999999999999999998873

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00023  Score=51.72  Aligned_cols=25  Identities=36%  Similarity=0.510  Sum_probs=21.1

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      ...-+.+.||.|||||++.+.++..
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHH
Confidence            3456789999999999999999843

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00021  Score=48.15  Aligned_cols=20  Identities=30%  Similarity=0.426  Sum_probs=18.0

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++.+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998763

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.93  E-value=0.00021  Score=48.07  Aligned_cols=20  Identities=25%  Similarity=0.363  Sum_probs=18.1

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++-+..
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998763

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=6.9e-05  Score=49.80  Aligned_cols=22  Identities=41%  Similarity=0.465  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|+.|+|||||++.|.+.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999864

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00024  Score=47.48  Aligned_cols=20  Identities=25%  Similarity=0.400  Sum_probs=17.7

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++-+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999987763

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00021  Score=47.86  Aligned_cols=20  Identities=35%  Similarity=0.493  Sum_probs=18.2

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|++|+|||||++.+..
T Consensus         6 i~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            79999999999999998864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0001  Score=49.78  Aligned_cols=21  Identities=38%  Similarity=0.431  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.++|||||++.|.+
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999998864

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.87  E-value=0.0002  Score=51.92  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++|+|.+|+|||||+|.|.+.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3799999999999999999864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.87  E-value=0.00013  Score=54.78  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=21.7

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      .+..+.|.||.||||||+++.+....
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhc
Confidence            34558999999999999999998543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00022  Score=50.17  Aligned_cols=20  Identities=30%  Similarity=0.305  Sum_probs=17.9

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+.||+|+||||+.++++.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHH
Confidence            67899999999999998873

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00023  Score=50.46  Aligned_cols=20  Identities=30%  Similarity=0.625  Sum_probs=18.3

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+.||.|+||||+.++++.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999984

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.84  E-value=0.00082  Score=47.62  Aligned_cols=24  Identities=21%  Similarity=0.130  Sum_probs=20.8

Q ss_pred             CEEEEECCCCCCcchHHHHHHhhh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ..+.|.||.|+||||+++.++...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999987543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00028  Score=47.71  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=18.0

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++.+..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998763

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.82  E-value=0.00027  Score=53.05  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             CCEEEEECCCCCCcchHHHHHH
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      .-++||.||.|||||||+..+.
T Consensus        51 ~~~igitG~pGaGKSTli~~l~   72 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALG   72 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHH
Confidence            4579999999999999998876

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00029  Score=47.49  Aligned_cols=20  Identities=30%  Similarity=0.291  Sum_probs=17.8

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|++|+|||||++-+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            68999999999999998763

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00027  Score=47.30  Aligned_cols=20  Identities=25%  Similarity=0.353  Sum_probs=18.0

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|++|+|||||++.+..
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998763

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.79  E-value=0.00027  Score=50.95  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCcchHHHHHHhhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      -+.|.||.|||||++.+.++...
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhcc
Confidence            46899999999999999998543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.79  E-value=0.00031  Score=48.55  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +++|-|.-||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998874

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00028  Score=52.11  Aligned_cols=20  Identities=25%  Similarity=0.335  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++||-|+.|||||||.+.|.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHH
Confidence            78999999999999987664

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00022  Score=50.66  Aligned_cols=20  Identities=35%  Similarity=0.419  Sum_probs=18.2

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.|.||.|+||||+.+.++.
T Consensus        36 lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0003  Score=47.32  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|.+|+|||||++-+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999987763

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.77  E-value=0.00027  Score=47.53  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++.+..
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999998864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00042  Score=46.68  Aligned_cols=19  Identities=37%  Similarity=0.515  Sum_probs=17.3

Q ss_pred             EEEECCCCCCcchHHHHHH
Q 044538           46 VAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~   64 (158)
                      ++++|++|+|||||++-+.
T Consensus         9 I~vvG~~~vGKSSli~~~~   27 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYV   27 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999998775

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00036  Score=47.52  Aligned_cols=20  Identities=15%  Similarity=0.230  Sum_probs=18.0

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++|+|+.|+|||||++-+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999988863

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00036  Score=46.80  Aligned_cols=20  Identities=35%  Similarity=0.438  Sum_probs=17.8

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++-+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999987763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00031  Score=46.98  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++.+..
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999998763

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.74  E-value=0.0031  Score=45.76  Aligned_cols=22  Identities=18%  Similarity=0.228  Sum_probs=19.5

Q ss_pred             CCEEEEECCCCCCcchHHHHHH
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ..+++|.|.-|.|||||.+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQAL   65 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999998875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00033  Score=47.12  Aligned_cols=20  Identities=20%  Similarity=0.404  Sum_probs=18.2

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++|+|+.|+|||||++.+..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.73  E-value=0.00038  Score=47.35  Aligned_cols=20  Identities=35%  Similarity=0.479  Sum_probs=18.0

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|..|+|||||++-+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998763

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0004  Score=46.45  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++-+..
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999988864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.71  E-value=0.00031  Score=47.81  Aligned_cols=20  Identities=35%  Similarity=0.577  Sum_probs=18.7

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +||+|+..||||||++.|.+
T Consensus         8 IaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            79999999999999999974

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.00042  Score=46.39  Aligned_cols=20  Identities=25%  Similarity=0.371  Sum_probs=18.0

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++|+|..|+|||||++-+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998863

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00045  Score=46.22  Aligned_cols=19  Identities=26%  Similarity=0.363  Sum_probs=17.4

Q ss_pred             EEEECCCCCCcchHHHHHH
Q 044538           46 VAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~   64 (158)
                      ++|+|..|+|||||++-+.
T Consensus         6 ivlvG~~~vGKTsLi~r~~   24 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYC   24 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            6899999999999999776

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00035  Score=51.66  Aligned_cols=30  Identities=30%  Similarity=0.359  Sum_probs=27.0

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      |.=+.+.+|+..+|+|++|+|||||+..++
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~   64 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIA   64 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHHHHHH
Confidence            555788999999999999999999998886

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00039  Score=46.28  Aligned_cols=21  Identities=19%  Similarity=0.332  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|..|+|||||++-+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            368999999999999998863

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00039  Score=46.98  Aligned_cols=21  Identities=29%  Similarity=0.276  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|++|+|||||++.+..
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            468999999999999988763

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00038  Score=48.85  Aligned_cols=20  Identities=35%  Similarity=0.421  Sum_probs=18.2

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+.||.|+||||+.++++.
T Consensus        38 lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHH
Confidence            67999999999999999974

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.00046  Score=45.88  Aligned_cols=20  Identities=20%  Similarity=0.481  Sum_probs=18.0

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++-+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00046  Score=46.09  Aligned_cols=20  Identities=30%  Similarity=0.333  Sum_probs=17.9

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++|+|+.|+|||||++-+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987763

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.62  E-value=0.00079  Score=46.18  Aligned_cols=31  Identities=26%  Similarity=0.338  Sum_probs=24.3

Q ss_pred             eeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++..-+.+ .|.-+.|.|++|+||||+.-.+.
T Consensus         6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            45555555 67889999999999999976654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.00047  Score=50.13  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=22.2

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++..-+.|.||+|+|||+|.+.++..
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHH
Confidence            344555889999999999999999854

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00052  Score=46.04  Aligned_cols=20  Identities=30%  Similarity=0.531  Sum_probs=18.0

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++.+.+
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            68999999999999998864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.57  E-value=0.00048  Score=49.64  Aligned_cols=22  Identities=36%  Similarity=0.527  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -+.+.||.|||||++.+.++..
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            3789999999999999999853

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00062  Score=48.95  Aligned_cols=26  Identities=42%  Similarity=0.491  Sum_probs=22.1

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+|+++.|.|+.|+|||||+--++.
T Consensus        26 ~~pg~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          26 MVAGTVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            35699999999999999999876653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00058  Score=45.76  Aligned_cols=20  Identities=35%  Similarity=0.413  Sum_probs=18.0

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++-+..
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999988764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.55  E-value=0.00031  Score=47.66  Aligned_cols=20  Identities=25%  Similarity=0.414  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .++++|++|+|||||++-+.
T Consensus        19 KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            36899999999999999886

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00075  Score=49.14  Aligned_cols=26  Identities=38%  Similarity=0.687  Sum_probs=22.7

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      =++.|.++-|.||+|||||||+-.++
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHH
Confidence            46789999999999999999976655

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.00052  Score=47.17  Aligned_cols=20  Identities=25%  Similarity=0.315  Sum_probs=18.1

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++|+|+.|+|||||++.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998763

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.53  E-value=0.00059  Score=48.29  Aligned_cols=20  Identities=15%  Similarity=0.394  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      ++||+|+-||||||..+.|.
T Consensus         3 iIgiTG~igSGKsTva~~l~   22 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIM   22 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999999985

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.00045  Score=53.21  Aligned_cols=20  Identities=40%  Similarity=0.526  Sum_probs=18.9

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++|+|..|+|||||+|.|.|
T Consensus        59 Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            79999999999999999975

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00063  Score=46.19  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|..|+|||||++-+..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999988763

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.00071  Score=48.88  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -+.|.||.|||||++.+.++.
T Consensus        40 giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHH
Confidence            378999999999999999984

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00058  Score=45.99  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|..|+|||||++-+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00067  Score=45.69  Aligned_cols=20  Identities=40%  Similarity=0.674  Sum_probs=18.1

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++.+.+
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00066  Score=45.44  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++-+..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            468999999999999997763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00066  Score=45.82  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=18.2

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++.+..
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.49  E-value=0.00037  Score=49.80  Aligned_cols=21  Identities=19%  Similarity=0.290  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++.+.||.|+||||+++.++.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            456679999999999998873

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00062  Score=45.73  Aligned_cols=20  Identities=30%  Similarity=0.378  Sum_probs=18.1

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++-+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998763

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.00065  Score=46.33  Aligned_cols=20  Identities=20%  Similarity=0.474  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+.|+|.+|+|||||++-+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            36899999999999998874

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.45  E-value=0.0007  Score=47.91  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++||+|...||||||++.|.+
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHh
Confidence            589999999999999998874

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00074  Score=45.22  Aligned_cols=20  Identities=25%  Similarity=0.366  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .++++|+.|+|||||++-+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~   27 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFV   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            36899999999999998876

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00079  Score=44.94  Aligned_cols=20  Identities=25%  Similarity=0.459  Sum_probs=18.0

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|..|+|||||++-+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            68999999999999998763

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.40  E-value=0.00041  Score=46.70  Aligned_cols=20  Identities=20%  Similarity=0.381  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+.++|++|+|||||++.+.
T Consensus        14 kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            36899999999999999886

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00061  Score=45.79  Aligned_cols=20  Identities=25%  Similarity=0.356  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .++++|+.|+|||||++-+.
T Consensus         5 Ki~vvG~~~vGKTsli~~~~   24 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHL   24 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            37899999999999998765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.00089  Score=44.89  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=17.7

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|+.|+|||||++-+..
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999997763

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.35  E-value=0.00081  Score=47.31  Aligned_cols=20  Identities=20%  Similarity=0.484  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+.|+|++|+|||||++-+.
T Consensus         8 KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            46899999999999998775

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00081  Score=45.78  Aligned_cols=19  Identities=32%  Similarity=0.363  Sum_probs=17.6

Q ss_pred             EEEECCCCCCcchHHHHHH
Q 044538           46 VAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~   64 (158)
                      ++|+|..|+|||||++-+.
T Consensus        12 i~lvG~~~vGKTsLi~r~~   30 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYA   30 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7999999999999998876

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00094  Score=44.69  Aligned_cols=19  Identities=32%  Similarity=0.403  Sum_probs=17.5

Q ss_pred             EEEECCCCCCcchHHHHHH
Q 044538           46 VAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~   64 (158)
                      ++++|+.|+|||||++-+.
T Consensus         9 i~vvG~~~vGKTsli~~~~   27 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFK   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7999999999999999775

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.34  E-value=0.00094  Score=44.73  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|+|+.|+|||||++-+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998763

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.00086  Score=45.49  Aligned_cols=20  Identities=30%  Similarity=0.581  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .++++|++|+|||||++-+.
T Consensus         4 KivliG~~~vGKTsli~r~~   23 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFA   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            36899999999999998775

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.31  E-value=0.00087  Score=51.56  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=21.5

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+...+.+.||.||||||++..+..
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhh
Confidence            4567899999999999999988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0011  Score=45.03  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++|+.|+|||||++-+..
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999997764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.30  E-value=0.0016  Score=44.53  Aligned_cols=25  Identities=32%  Similarity=0.234  Sum_probs=20.1

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHH
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      .-.|.-+.|.|++|+||||+.-.+.
T Consensus        11 ~~~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          11 DIYGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHH
Confidence            3456778999999999999876554

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.00071  Score=45.51  Aligned_cols=19  Identities=16%  Similarity=0.333  Sum_probs=8.5

Q ss_pred             EEEECCCCCCcchHHHHHH
Q 044538           46 VAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~   64 (158)
                      ++++|..|+|||||++.+.
T Consensus         9 i~vvG~~~vGKTsLi~~l~   27 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFS   27 (173)
T ss_dssp             EEEECCCCC----------
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999998665

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0012  Score=45.17  Aligned_cols=20  Identities=25%  Similarity=0.258  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .++++|+.|+|||||++-+.
T Consensus         5 KvvllG~~~vGKTSli~r~~   24 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYT   24 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            37899999999999998776

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.13  E-value=0.0013  Score=49.88  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=24.3

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++++.++.+.||.|+||||+.+.++.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            557888999999999999999999974

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.11  E-value=0.0016  Score=47.53  Aligned_cols=26  Identities=27%  Similarity=0.565  Sum_probs=22.7

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      =++.|.++-+.||+|||||||+-.++
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHH
Confidence            47889999999999999999975555

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0014  Score=48.67  Aligned_cols=20  Identities=25%  Similarity=0.483  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+.++||+|+|||.|.+.++
T Consensus        54 ~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHH
Confidence            57899999999999999997

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0013  Score=46.39  Aligned_cols=22  Identities=32%  Similarity=0.383  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|=|+-||||||+++.|.-
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4789999999999999999974

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.04  E-value=0.0018  Score=47.12  Aligned_cols=27  Identities=33%  Similarity=0.561  Sum_probs=23.4

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      =++.|.++-+.||+|||||||+-.++.
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHH
Confidence            467899999999999999999876664

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.99  E-value=0.0014  Score=51.02  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -+.++||+|||||-|.+.++..
T Consensus        51 NILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.98  E-value=0.0025  Score=43.29  Aligned_cols=25  Identities=32%  Similarity=0.243  Sum_probs=20.2

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHH
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      .-.|.-+.|.|++|+||||+.-.+.
T Consensus        12 ~~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          12 DVYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHH
Confidence            3457788999999999999875544

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.97  E-value=0.0017  Score=43.77  Aligned_cols=20  Identities=20%  Similarity=0.478  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+.++|..|+|||||++-+.
T Consensus         4 KivllG~~~vGKTsl~~r~~   23 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMK   23 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            36899999999999998775

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.87  E-value=0.002  Score=47.13  Aligned_cols=31  Identities=19%  Similarity=0.176  Sum_probs=27.1

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      |.=+.+.+|+..+|+|+.|+|||||+..++.
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            5567899999999999999999999777753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.82  E-value=0.002  Score=45.21  Aligned_cols=20  Identities=30%  Similarity=0.328  Sum_probs=18.2

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.|.||+|||||-|+.+++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            57999999999999999874

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0021  Score=45.33  Aligned_cols=21  Identities=19%  Similarity=0.208  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++.|.|.=|||||||++-+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEeeCCCCCHHHHHHHHHh
Confidence            678999999999999988764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.80  E-value=0.0021  Score=43.48  Aligned_cols=19  Identities=21%  Similarity=0.517  Sum_probs=17.4

Q ss_pred             EEEECCCCCCcchHHHHHH
Q 044538           46 VAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~   64 (158)
                      +.++|..|+|||||++-+.
T Consensus         5 iv~lG~~~vGKTsll~r~~   23 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMR   23 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6899999999999998886

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.72  E-value=0.002  Score=46.88  Aligned_cols=20  Identities=40%  Similarity=0.606  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .++|+|+.|+|||||...|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            47999999999999999885

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.59  E-value=0.0028  Score=43.40  Aligned_cols=20  Identities=35%  Similarity=0.561  Sum_probs=18.6

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|++|.-.+|||||++.|.+
T Consensus         8 IaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEeccCCcHHHHHHHHHh
Confidence            69999999999999999975

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.0029  Score=44.81  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.|.||+|+||||+.++++.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            467889999999999998874

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.54  E-value=0.003  Score=43.88  Aligned_cols=19  Identities=37%  Similarity=0.574  Sum_probs=17.7

Q ss_pred             EEEECCCCCCcchHHHHHH
Q 044538           46 VAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~   64 (158)
                      ++++|.-++|||||++.|.
T Consensus         6 i~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            6999999999999999885

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.53  E-value=0.0028  Score=46.38  Aligned_cols=20  Identities=20%  Similarity=0.307  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      -++|+|+.|||||||...|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47999999999999998885

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0027  Score=46.40  Aligned_cols=22  Identities=59%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -+++|+||-++|||||++.+.+
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~   54 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAG   54 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            3799999999999999999975

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0041  Score=43.16  Aligned_cols=21  Identities=19%  Similarity=0.164  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+.+.||.|+||||+.+.++.
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478899999999999998874

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.28  E-value=0.0032  Score=46.69  Aligned_cols=22  Identities=36%  Similarity=0.392  Sum_probs=19.0

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      --+.|.||.|+|||||.+.++.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            3478999999999999998863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.12  E-value=0.0051  Score=45.02  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+||+|..-||||||++.++.
T Consensus        12 kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            489999999999999999984

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.0044  Score=47.22  Aligned_cols=21  Identities=38%  Similarity=0.411  Sum_probs=17.4

Q ss_pred             CEEEEECCCCCCcchHHHHHH
Q 044538           44 TCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~   64 (158)
                      .-+.|+|++|||||++++.+.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            348999999999999987554

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.01  E-value=0.0047  Score=45.17  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++++|.-.||||||++.|.|.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTS
T ss_pred             eEEEEeCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.95  E-value=0.0051  Score=45.26  Aligned_cols=20  Identities=25%  Similarity=0.478  Sum_probs=18.7

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +||+|..-+|||||++.+++
T Consensus         3 v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EeEECCCCCCHHHHHHHHHC
Confidence            79999999999999999974

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.88  E-value=0.005  Score=44.78  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++++|.-.||||||++.|.+.
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTS
T ss_pred             eEEEEcCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.88  E-value=0.0056  Score=45.37  Aligned_cols=20  Identities=35%  Similarity=0.627  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      .+.++||+|+|||.+.+.++
T Consensus        55 ~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHH
Confidence            57889999999999999887

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.0064  Score=44.17  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -..|+||.|+|||+++.-++.
T Consensus        41 n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHH
Confidence            457999999999999988874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.86  E-value=0.0061  Score=45.44  Aligned_cols=29  Identities=28%  Similarity=0.434  Sum_probs=22.4

Q ss_pred             EEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538           38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVRR   67 (158)
Q Consensus        38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~~   67 (158)
                      ...++| ++.+.||.|||||.|.+.++...
T Consensus       119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence            444544 45667999999999999999764

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.0053  Score=45.52  Aligned_cols=19  Identities=32%  Similarity=0.569  Sum_probs=17.3

Q ss_pred             eCCCEEEEECCCCCCcchH
Q 044538           41 DMGTCVAIVGPNDTGKSPL   59 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTL   59 (158)
                      +.|++..+.|-||+|||||
T Consensus        12 ~~~~~alfFGLSGTGKTTL   30 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTL   30 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHH
T ss_pred             CCCCEEEEEccCCCCcccc
Confidence            4689999999999999997

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.0069  Score=41.92  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      -..|+||.|.|||++..-++..
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            3589999999999999888753

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=94.82  E-value=0.0051  Score=45.70  Aligned_cols=18  Identities=33%  Similarity=0.540  Sum_probs=16.7

Q ss_pred             CCCEEEEECCCCCCcchH
Q 044538           42 MGTCVAIVGPNDTGKSPL   59 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTL   59 (158)
                      .|++..+.|.||+|||||
T Consensus        13 ~~~valffGLSGTGKTTL   30 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTL   30 (318)
T ss_dssp             TCCEEEEEECTTSCHHHH
T ss_pred             CCCEEEEEccCCCCcccc
Confidence            488999999999999998

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.80  E-value=0.0065  Score=45.97  Aligned_cols=26  Identities=23%  Similarity=0.489  Sum_probs=20.5

Q ss_pred             EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538           39 GIDMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        39 ~i~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      +.+++.+ .++||+|+|||-|.+.|+.
T Consensus        65 ~~p~~ni-LfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          65 ELSKSNI-LLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             TCCCCCE-EEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcce-eeeCCCCccHHHHHHHHHh
Confidence            3455554 6789999999999999874

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=94.75  E-value=0.0051  Score=38.85  Aligned_cols=21  Identities=14%  Similarity=0.086  Sum_probs=17.9

Q ss_pred             eeCCCEEEEECCCCCCcchHH
Q 044538           40 IDMGTCVAIVGPNDTGKSPLP   60 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl   60 (158)
                      +++|+.+.|.+|.|||||+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            467999999999999999653

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.66  E-value=0.0084  Score=43.38  Aligned_cols=21  Identities=43%  Similarity=0.453  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .+||||-.-+|||||++.++.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHC
Confidence            579999999999999999983

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=94.62  E-value=0.004  Score=45.47  Aligned_cols=30  Identities=20%  Similarity=0.310  Sum_probs=26.1

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      |.=+.+.+|+..+|+|++|+|||+|+..+.
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred             eccccccCCceEeeccCCCCChHHHHHHHH
Confidence            566789999999999999999999986544

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.49  E-value=0.009  Score=41.12  Aligned_cols=20  Identities=30%  Similarity=0.517  Sum_probs=18.3

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|.-.+|||||++.|.+
T Consensus        11 i~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3          11 IGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEEccCCcHHHHHHHHHh
Confidence            69999999999999999974

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.43  E-value=0.0059  Score=44.74  Aligned_cols=30  Identities=23%  Similarity=0.263  Sum_probs=26.1

Q ss_pred             eeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538           35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      |.=+.+.+|+..+|+|+.|+|||+|+.-+.
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            566889999999999999999999976554

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.42  E-value=0.0081  Score=44.68  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=17.7

Q ss_pred             eCCCEEEEECCCCCCcchHH
Q 044538           41 DMGTCVAIVGPNDTGKSPLP   60 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl   60 (158)
                      +.|++..+.|-||+|||||-
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            36788999999999999994

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.21  E-value=0.008  Score=43.70  Aligned_cols=17  Identities=18%  Similarity=0.239  Sum_probs=13.8

Q ss_pred             CEEEEECCCCCCcchHH
Q 044538           44 TCVAIVGPNDTGKSPLP   60 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl   60 (158)
                      ..+.|.|+-||||||.+
T Consensus        25 g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SCEEEEECTTSCHHHHH
T ss_pred             CCEEEEecCCccHHHHH
Confidence            34678899999999864

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.16  E-value=0.01  Score=41.53  Aligned_cols=19  Identities=37%  Similarity=0.531  Sum_probs=17.3

Q ss_pred             EEEECCCCCCcchHHHHHH
Q 044538           46 VAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~   64 (158)
                      ++++|.-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            6999999999999998775

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.12  E-value=0.012  Score=40.46  Aligned_cols=20  Identities=30%  Similarity=0.498  Sum_probs=18.0

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      +|++|.-.+|||||++.|.+
T Consensus         6 i~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            69999999999999998863

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.03  E-value=0.01  Score=42.60  Aligned_cols=17  Identities=12%  Similarity=0.184  Sum_probs=13.9

Q ss_pred             CEEEEECCCCCCcchHH
Q 044538           44 TCVAIVGPNDTGKSPLP   60 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl   60 (158)
                      .-+.|+|+-||||||.+
T Consensus        15 ~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SEEEECCCTTSCHHHHH
T ss_pred             CCEEEEeeCCccHHHHH
Confidence            34689999999999853

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.02  E-value=0.013  Score=37.33  Aligned_cols=21  Identities=19%  Similarity=0.161  Sum_probs=16.4

Q ss_pred             CCEEEEECCCCCCcchHHHHH
Q 044538           43 GTCVAIVGPNDTGKSPLPNLL   63 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i   63 (158)
                      -+...|.+|.|||||+++-.+
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHH
Confidence            456678999999999986433

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.74  E-value=0.016  Score=43.18  Aligned_cols=21  Identities=14%  Similarity=0.177  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|=|+=||||||+++.+..
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478889999999999999974

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.68  E-value=0.013  Score=43.73  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCcchHHHHHHh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~   65 (158)
                      .++|=|+=||||||+++.+..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC
T ss_pred             EEEEECCcCCCHHHHHHHHHH
Confidence            478889999999999999963

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.43  E-value=0.02  Score=42.74  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCcchHHHHHHhh
Q 044538           45 CVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .+.|=|+=||||||+++.++..
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSG
T ss_pred             EEEEECCccCCHHHHHHHHHHH
Confidence            4678899999999999999753

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=93.30  E-value=0.021  Score=40.04  Aligned_cols=20  Identities=35%  Similarity=0.318  Sum_probs=18.0

Q ss_pred             EEEECCCCCCcchHHHHHHh
Q 044538           46 VAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++++|.-.+|||||++.|..
T Consensus        12 i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999998863

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=93.29  E-value=0.014  Score=41.84  Aligned_cols=19  Identities=11%  Similarity=0.008  Sum_probs=17.2

Q ss_pred             eeCCCEEEEECCCCCCcch
Q 044538           40 IDMGTCVAIVGPNDTGKSP   58 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKST   58 (158)
                      +.+|+.+.|.+|.|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            4688999999999999997

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.022  Score=42.85  Aligned_cols=21  Identities=24%  Similarity=0.189  Sum_probs=17.8

Q ss_pred             CCCEEEEECCCCCCcchHHHH
Q 044538           42 MGTCVAIVGPNDTGKSPLPNL   62 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~   62 (158)
                      .+.++.|.||-|+||||++..
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHH
Confidence            467999999999999998643

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.68  E-value=0.018  Score=43.10  Aligned_cols=19  Identities=32%  Similarity=0.543  Sum_probs=17.8

Q ss_pred             EEEECCCCCCcchHHHHHH
Q 044538           46 VAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~   64 (158)
                      +||+|.-|+|||||+..|.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            7999999999999999885

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.42  E-value=0.029  Score=39.68  Aligned_cols=19  Identities=37%  Similarity=0.559  Sum_probs=17.1

Q ss_pred             EEEECCCCCCcchHHHHHH
Q 044538           46 VAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~   64 (158)
                      ++++|..++|||||...|.
T Consensus         9 i~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5999999999999987775

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.40  E-value=0.035  Score=40.00  Aligned_cols=27  Identities=22%  Similarity=0.417  Sum_probs=22.7

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      .++-.++.+.||-++||||++++|...
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            355668899999999999999999753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.33  E-value=0.026  Score=42.88  Aligned_cols=19  Identities=26%  Similarity=0.440  Sum_probs=16.6

Q ss_pred             EEEECCCCCCcchHHHHHH
Q 044538           46 VAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~   64 (158)
                      ..|+||.|+|||+++.-++
T Consensus        46 ~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHH
Confidence            3789999999999988776

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.07  E-value=0.04  Score=35.02  Aligned_cols=25  Identities=12%  Similarity=0.133  Sum_probs=21.2

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHHh
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      ++|=.+.+.|-+||||||+.+.+..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            4566788999999999999998864

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=92.04  E-value=0.037  Score=45.08  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=20.1

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHH
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ...+.+.|.|+||||||+-.+.+.
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il  107 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIM  107 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Confidence            456899999999999999877663

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.02  E-value=0.031  Score=38.34  Aligned_cols=97  Identities=11%  Similarity=0.063  Sum_probs=54.1

Q ss_pred             CCEEEEECCCCCCcchHHHHHHhhhhcc------e-eeeccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHH
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLAVRRRQK------L-RIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQ  115 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq  115 (158)
                      +--+.+.||+|+||||+...++......      + .+.  +.  ..... .+.++++.+.+...+...         + 
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~--~~--~~~I~-Id~IR~i~~~~~~~~~~~---------~-   79 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID--PE--GENIG-IDDIRTIKDFLNYSPELY---------T-   79 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC--CS--SSCBC-HHHHHHHHHHHTSCCSSS---------S-
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEe--CC--cCCCC-HHHHHHHHHHHhhCcccC---------C-
Confidence            3467899999999999998887432111      0 011  00  00111 244556666554433211         1 


Q ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538          116 KVRVMFTLVSMYHLDTQSIVAVAVTLDEFA--GGVVLVSHDSR  156 (158)
Q Consensus       116 kqrv~ia~~~l~~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~  156 (158)
                       .||.| .--...+...+...+++.|++..  ..+|++|++.+
T Consensus        80 -~KviI-Id~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~  120 (198)
T d2gnoa2          80 -RKYVI-VHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWH  120 (198)
T ss_dssp             -SEEEE-ETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred             -CEEEE-EeCccccchhhhhHHHHHHhCCCCCceeeeccCChh
Confidence             23433 11233577788888888998864  34677777654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.00  E-value=0.022  Score=40.45  Aligned_cols=19  Identities=32%  Similarity=0.517  Sum_probs=17.4

Q ss_pred             EEEECCCCCCcchHHHHHH
Q 044538           46 VAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        46 ~~liG~nGsGKSTLl~~i~   64 (158)
                      ++++|.-++|||||+..|.
T Consensus        27 i~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHH
Confidence            6999999999999998884

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.98  E-value=0.042  Score=35.61  Aligned_cols=22  Identities=36%  Similarity=0.368  Sum_probs=18.5

Q ss_pred             CCEEEEECCCCCCcch-HHHHHH
Q 044538           43 GTCVAIVGPNDTGKSP-LPNLLA   64 (158)
Q Consensus        43 G~~~~liG~nGsGKST-Ll~~i~   64 (158)
                      |.+..++||=.||||| |++.+.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHH
Confidence            6788999999999999 666653

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.76  E-value=0.039  Score=45.14  Aligned_cols=24  Identities=17%  Similarity=0.267  Sum_probs=20.2

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHH
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ...+.+.|.|+||||||.-.+.+.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il  146 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVI  146 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHH
Confidence            457899999999999999777664

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.70  E-value=0.04  Score=39.06  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=18.9

Q ss_pred             CCEEEEECCCCCCcchHHHHHH
Q 044538           43 GTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        43 G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +.-+.|.|+.|+||+++.+.|.
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHH
Confidence            3456899999999999999985

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.60  E-value=0.042  Score=44.93  Aligned_cols=24  Identities=13%  Similarity=0.196  Sum_probs=20.0

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHH
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ...+.+.|.|+||||||+-.+.+.
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il  112 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVI  112 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHH
Confidence            356899999999999999777664

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.31  E-value=0.045  Score=37.88  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=23.1

Q ss_pred             eeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNLLAVR   66 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~i~~~   66 (158)
                      +++-.++.+.||.++|||++...|+..
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHH
Confidence            567789999999999999999877644

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.18  E-value=0.038  Score=38.50  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=18.5

Q ss_pred             eeCCCEEEEECCCCCCcchHHHH
Q 044538           40 IDMGTCVAIVGPNDTGKSPLPNL   62 (158)
Q Consensus        40 i~~G~~~~liG~nGsGKSTLl~~   62 (158)
                      +-.|+-+.+++|.|+|||+..-+
T Consensus        55 ~l~g~~~~i~apTGsGKT~~~~~   77 (237)
T d1gkub1          55 ILRKESFAATAPTGVGKTSFGLA   77 (237)
T ss_dssp             HHTTCCEECCCCBTSCSHHHHHH
T ss_pred             HHCCCCEEEEecCCChHHHHHHH
Confidence            34788899999999999976433

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.68  E-value=0.054  Score=44.83  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=19.4

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHH
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ...+.+.|.|+||||||+-.+.+.
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il  144 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVI  144 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHH
Confidence            346789999999999998766553

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=90.02  E-value=0.059  Score=44.55  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=18.9

Q ss_pred             CCCEEEEECCCCCCcchHHHHHH
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ..+++.|.|+||||||.-.+.+.
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il  142 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVI  142 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHH
Confidence            46899999999999998765553

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=89.84  E-value=0.085  Score=35.53  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.1

Q ss_pred             CCCEEEEECCCCCCcchHHHHHHh
Q 044538           42 MGTCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      |+++++|.|-||  |||.-.++..
T Consensus         1 p~kvI~VTGTnG--KTTt~~mi~~   22 (214)
T d1gg4a4           1 PARVVALTGSSG--KTSVKEMTAA   22 (214)
T ss_dssp             CCEEEEEECSSC--HHHHHHHHHH
T ss_pred             CCCEEEEeCCCc--HHHHHHHHHH
Confidence            578999999998  9999888863

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=0.079  Score=33.97  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=18.0

Q ss_pred             CCCEEEEECCCCCCcchH-HHHH
Q 044538           42 MGTCVAIVGPNDTGKSPL-PNLL   63 (158)
Q Consensus        42 ~G~~~~liG~nGsGKSTL-l~~i   63 (158)
                      +|.+..|+||=.|||||- ++.+
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~   23 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRV   23 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHH
Confidence            488899999999999994 4444

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.66  E-value=0.022  Score=38.79  Aligned_cols=20  Identities=25%  Similarity=0.346  Sum_probs=16.4

Q ss_pred             eCCCEEEEECCCCCCcchHH
Q 044538           41 DMGTCVAIVGPNDTGKSPLP   60 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl   60 (158)
                      ..|+-+.+.+|.|||||+..
T Consensus        38 ~~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          38 FSGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TTCSCEEEECSSHHHHHHHH
T ss_pred             HcCCCEEEEcCCCCchhHHH
Confidence            35777889999999999763

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.63  E-value=0.08  Score=43.33  Aligned_cols=24  Identities=13%  Similarity=0.282  Sum_probs=19.7

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHH
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      ...+.+.|.|+||||||+-.+.+.
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il  115 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAM  115 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHH
Confidence            457889999999999998766553

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=88.85  E-value=0.096  Score=35.23  Aligned_cols=21  Identities=19%  Similarity=0.283  Sum_probs=16.6

Q ss_pred             CEEEEECCC-CCCcchHHHHHH
Q 044538           44 TCVAIVGPN-DTGKSPLPNLLA   64 (158)
Q Consensus        44 ~~~~liG~n-GsGKSTLl~~i~   64 (158)
                      +.+.|.|-+ |+||||+.-.|+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            467899997 999999855554

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.34  E-value=0.18  Score=35.97  Aligned_cols=22  Identities=41%  Similarity=0.430  Sum_probs=19.8

Q ss_pred             CEEEEECCCCCCcchHHHHHHh
Q 044538           44 TCVAIVGPNDTGKSPLPNLLAV   65 (158)
Q Consensus        44 ~~~~liG~nGsGKSTLl~~i~~   65 (158)
                      -.++++|-.-+|||||+|.+.+
T Consensus       113 ~~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         113 IRALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEEecCccchhhhhhhhhc
Confidence            3489999999999999999975

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.27  E-value=0.2  Score=33.33  Aligned_cols=15  Identities=33%  Similarity=0.463  Sum_probs=12.1

Q ss_pred             EEEECCCCCCcchHH
Q 044538           46 VAIVGPNDTGKSPLP   60 (158)
Q Consensus        46 ~~liG~nGsGKSTLl   60 (158)
                      ..+.+|.|+|||...
T Consensus        26 ~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIA   40 (200)
T ss_dssp             EEEECCTTSCHHHHH
T ss_pred             eEEEeCCCCcHHHHH
Confidence            457899999999753

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=85.33  E-value=0.24  Score=33.35  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=18.4

Q ss_pred             eCCCEEEEECCCCCCcchHHHHHH
Q 044538           41 DMGTCVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        41 ~~G~~~~liG~nGsGKSTLl~~i~   64 (158)
                      +..+++||.|-||  |||.-.++.
T Consensus        12 ~~~~~iAITGTnG--KTTt~~~l~   33 (207)
T d1j6ua3          12 EKKEEFAVTGTDG--KTTTTAMVA   33 (207)
T ss_dssp             HCCCEEEEECSSS--HHHHHHHHH
T ss_pred             cCCCEEEEECCCC--HHHHHHHHH
Confidence            3568999999997  999887775

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.31  E-value=0.24  Score=33.64  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=17.5

Q ss_pred             CCEEEEE-CCCCCCcchHHHHHH
Q 044538           43 GTCVAIV-GPNDTGKSPLPNLLA   64 (158)
Q Consensus        43 G~~~~li-G~nGsGKSTLl~~i~   64 (158)
                      |+++++. +.-|+||||+.--++
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA   24 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLS   24 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHH
Confidence            6788888 668999999865554

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.39  E-value=0.22  Score=32.15  Aligned_cols=22  Identities=41%  Similarity=0.484  Sum_probs=18.4

Q ss_pred             CCCEEEEECCCCCCcch-HHHHH
Q 044538           42 MGTCVAIVGPNDTGKSP-LPNLL   63 (158)
Q Consensus        42 ~G~~~~liG~nGsGKST-Ll~~i   63 (158)
                      .|.+..|+||=.||||| |++.+
T Consensus         6 ~G~l~lI~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           6 HGWVEVIVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceeEEEEEeccccHHHHHHHHHH
Confidence            58889999999999999 44544

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=82.02  E-value=0.32  Score=33.97  Aligned_cols=20  Identities=40%  Similarity=0.424  Sum_probs=16.5

Q ss_pred             EEEEECCCCCCcchHHHHHH
Q 044538           45 CVAIVGPNDTGKSPLPNLLA   64 (158)
Q Consensus        45 ~~~liG~nGsGKSTLl~~i~   64 (158)
                      +++|.|.=|+||||+.--++
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA   22 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLT   22 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            67899999999999865554

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.77  E-value=0.39  Score=35.72  Aligned_cols=26  Identities=19%  Similarity=0.286  Sum_probs=21.1

Q ss_pred             eEEeeCCCEEEEEC--CCCCCcchHHHH
Q 044538           37 DMGIDMGTCVAIVG--PNDTGKSPLPNL   62 (158)
Q Consensus        37 sl~i~~G~~~~liG--~nGsGKSTLl~~   62 (158)
                      -++=++|+.+-+.|  ||+||||+|.-+
T Consensus        10 gvt~P~g~~~yvaaAFPSaCGKTnlAMl   37 (363)
T d1khba1          10 GITNPEGEKKYLAAAFPSACGKTNLAMM   37 (363)
T ss_dssp             EEECTTSCEEEEEEECCTTSCHHHHHTC
T ss_pred             eecCCCCCEEEEEEecCccccchhHHHh
Confidence            44557799999998  899999999654