Citrus Sinensis ID: 044557
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 362 | 2.2.26 [Sep-21-2011] | |||||||
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.872 | 0.233 | 0.297 | 2e-24 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.776 | 0.184 | 0.266 | 2e-23 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.604 | 0.130 | 0.291 | 3e-19 | |
| P90648 | 732 | Myosin heavy chain kinase | yes | no | 0.762 | 0.377 | 0.274 | 1e-17 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.872 | 0.251 | 0.262 | 1e-17 | |
| Q6CBI8 | 332 | Probable cytosolic iron-s | yes | no | 0.560 | 0.611 | 0.275 | 2e-16 | |
| Q5RFF8 | 485 | Notchless protein homolog | yes | no | 0.867 | 0.647 | 0.283 | 3e-16 | |
| Q9NVX2 | 485 | Notchless protein homolog | yes | no | 0.867 | 0.647 | 0.281 | 4e-16 | |
| Q58D20 | 486 | Notchless protein homolog | no | no | 0.859 | 0.639 | 0.278 | 7e-16 | |
| C4YFX2 | 511 | Transcriptional repressor | N/A | no | 0.635 | 0.450 | 0.240 | 1e-15 |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function desciption |
|---|
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 169/377 (44%), Gaps = 61/377 (16%)
Query: 3 NLSVVD---HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEF 57
+SVV+ + C TL+GH S V S+A + G+ + +GS D ++ WD +S +
Sbjct: 822 TISVVEAEWNACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDT---ASGTGTQT 878
Query: 58 LSNNNIVAVGKGAVKSLVVLADK--LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLG 115
L + G+V S+ D+ + S D I++W D T TL G
Sbjct: 879 LEGHG------GSVWSVAFSPDRERVASGSDDKTIKIW-------DAASGTCTQTLEGHG 925
Query: 116 DRAIKLLMPKNHVQIRRHK-------------TCTWV--HHVDAVSALALTKDETLLYSV 160
R + + ++ TCT H +V ++A + D + S
Sbjct: 926 GRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASG 985
Query: 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219
S D+TIKIW T+ C +++ H ++ +VA S DG V +GS DK IK+W + G
Sbjct: 986 SGDKTIKIWDTASGTCTQTL-EGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASG--- 1041
Query: 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI 279
+ LE H + ++ S DG + SG+ D +I +W D + L GH S+
Sbjct: 1042 -TCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIW----DAVSGTCTQTLEGHGDSV 1096
Query: 280 LCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSD 337
+A D V SGS D TI+IW + TC LEGH G V +A + D R
Sbjct: 1097 WSVAFSPDGQRVASGSIDGTIKIWDAA--SGTCTQTLEGHGGWVHSVAFSPDGQR----- 1149
Query: 338 TSYLVCSGSLDCDIKVW 354
V SGS+D IK+W
Sbjct: 1150 ----VASGSIDGTIKIW 1162
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 165/357 (46%), Gaps = 76/357 (21%)
Query: 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TL+GH ++V+++A + G L +GS D VR WD +S++ + + +
Sbjct: 1150 CLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWD------------ISSSKCLYILQ 1197
Query: 69 GA---VKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLM 123
G V S+V D L S D +R+W+IN+ K L
Sbjct: 1198 GHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSS---------------------KCL- 1235
Query: 124 PKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA 183
CT+ H V+++ D ++L S S D+T+++W S KCL +
Sbjct: 1236 ------------CTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTF-QG 1282
Query: 184 HDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242
H + +N+VA + DG + +GS D+ +++W S H+ + H S ++++ S DG
Sbjct: 1283 HTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTF----QGHTSWVSSVTFSPDG 1338
Query: 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRI 300
++L SG+ D+++ +W + + GHT + + D ++ SGS D+T+R+
Sbjct: 1339 TMLASGSDDQTVRLWSISSGE----CLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRL 1394
Query: 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
W + CL L+GH V + + D L+ SGS D +++W IS
Sbjct: 1395 WS--ISSGKCLYTLQGHNNWVGSIVFSPDGT---------LLASGSDDQTVRLWNIS 1440
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 130/254 (51%), Gaps = 35/254 (13%)
Query: 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166
+LAT+ TL +A+ + +N ++ H D V ++++++D + S S D+TI
Sbjct: 1048 KLATVTTL-QQALFEMQERNRLE----------GHKDGVISISISRDGQTIASGSLDKTI 1096
Query: 167 KIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDV 225
K+W + D + ++ N H+DA+ +V+ S DG + +G +DK IK+W+ S G +L+
Sbjct: 1097 KLW-SRDGRLFRTL-NGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDG----TLLKT 1150
Query: 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285
+ H +N + S DG L S + D SI +W+ G +L+ L GH+ ++ +
Sbjct: 1151 ITGHEQTVNNVYFSPDGKNLASASSDHSIKLWDT--TSGQLLMT--LTGHSAGVITVRFS 1206
Query: 286 SD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC 343
D + +GS DKT+++W D L L GH+ V L+ + D +
Sbjct: 1207 PDGQTIAAGSEDKTVKLWHRQDGK--LLKTLNGHQDWVNSLSFSPDGKT---------LA 1255
Query: 344 SGSLDCDIKVWQIS 357
S S D IK+W+I+
Sbjct: 1256 SASADKTIKLWRIA 1269
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 148/343 (43%), Gaps = 67/343 (19%)
Query: 12 LTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
+ T+KG++ S L + L+TG SDN +R +D + + E Q + +G V
Sbjct: 454 IETIKGYH-VTSHLCICDNLLFTGCSDNSIRVYDYKSQNMECVQTLKGH-------EGPV 505
Query: 72 KSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIR 131
+S+ LFS DH I+VW + +L + TL
Sbjct: 506 ESICYNDQYLFSGSSDHSIKVWDLK----------KLRCIFTLEG--------------- 540
Query: 132 RHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAV 191
H V + L ++ L+S S D+TIK+W +C ++ +H A+ +
Sbjct: 541 ---------HDKPVHTVLL--NDKYLFSGSSDKTIKVWDLKTLECKYTL-ESHARAVKTL 588
Query: 192 ALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD 251
+S +++GS DK IKVW K L+ H + + + G+ LYSG+ D
Sbjct: 589 CISGQY-LFSGSNDKTIKVWDL----KTFRCNYTLKGHTKWVTTICIL--GTNLYSGSYD 641
Query: 252 RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCL 311
++I VW + ++ LRGH + + M + L+ + S D TI+IW C
Sbjct: 642 KTIRVWNLK----SLECSATLRGHDRWVEHMVICDKLLFTASDDNTIKIWDL--ETLRCN 695
Query: 312 AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354
LEGH V+CLA D +C V S S D I+VW
Sbjct: 696 TTLEGHNATVQCLAVWEDK-KC--------VISCSHDQSIRVW 729
|
Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 7 |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 158/366 (43%), Gaps = 50/366 (13%)
Query: 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVG 67
CL T GH + V S+A + K L +GS D ++ WDC T + N + +V
Sbjct: 843 ECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHIC-IKTLHGHTNEVCSVA 901
Query: 68 ---KGAVKSLVVL--ADKLFSAHQDHKIRVWKINNQ-------EPDHQKYTRLATLPTLG 115
G + V L + +L++ ++ W N PD Q +
Sbjct: 902 FSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSN----- 956
Query: 116 DRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK 175
D+ +KL + I + H D + +A + D L S S D ++++W S +
Sbjct: 957 DKTVKLWDWQTGKYISSLEG-----HTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQ 1011
Query: 176 CLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN 234
C + I H D + AV G + TGSAD +K+W S G + L H+ I
Sbjct: 1012 CFQ-ILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQ----CLKTLSEHSDKIL 1066
Query: 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCS 291
+A S DG +L S + D+S+ +W D VG LRGH+ + A+ S +++ +
Sbjct: 1067 GMAWSPDGQLLASASADQSVRLW----DCCTGRCVGILRGHSNRVYS-AIFSPNGEIIAT 1121
Query: 292 GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351
S D+T++IW + CL L GH V +A + D ++ S S D +
Sbjct: 1122 CSTDQTVKIWDW--QQGKCLKTLTGHTNWVFDIAFSPDGK---------ILASASHDQTV 1170
Query: 352 KVWQIS 357
++W ++
Sbjct: 1171 RIWDVN 1176
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q6CBI8|CIAO1_YARLI Probable cytosolic iron-sulfur protein assembly protein 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CIA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 111/214 (51%), Gaps = 11/214 (5%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-- 198
H D A ++ + LL + S D+T++I+ T++++ + +IT H+ ++ +VA G
Sbjct: 10 HTDRAWAASVHPNLPLLATCSGDKTVRIYNTNNWELVTTITEGHNRSVRSVAWKPSGSSP 69
Query: 199 -VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257
+ GS D + +W + + + + +E H + + ++ SCDG +L + + D+SI VW
Sbjct: 70 SLALGSFDSTVSIWGKE--DDEWQFLAAIEGHENEVKGVSWSCDGQLLATCSRDKSIWVW 127
Query: 258 EKEEDDGNILVVGALRGHTKSILCMAV-VSDLV-CSGSADKTIRIWRGIDRNYTCLAVLE 315
E ++ + + L+ HT+ + +A S++V S S D T+R+WR D ++ C+A L
Sbjct: 128 EADDMNDEFECISVLQDHTQDVKHVAWHPSEMVFASASYDDTVRLWREDDDDWICVADLG 187
Query: 316 GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC 349
GH V A + + SD + CS C
Sbjct: 188 GHESTVWGCAF----EPSEGSDLRLVSCSDDKTC 217
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
| >sp|Q5RFF8|NLE1_PONAB Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 167/370 (45%), Gaps = 56/370 (15%)
Query: 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNT----FSSELDQEFLSNNNIV 64
C ++L+GH+ V S+A + GK+L +GS D VR WD +T F+ + + ++ + +
Sbjct: 106 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWS 165
Query: 65 AVGKGAVKSLVVLADKLFSAHQDHKIRVW------KINNQEPDHQKY-TRLATLPTLGDR 117
GK KL S ++ +I +W ++ H K+ T L+ P +
Sbjct: 166 PDGK-----------KLASGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANP 214
Query: 118 AIKLLMPKNH---VQI------RRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168
+ + + V+I R + T H +V+ L D LLYS S DRTIK+
Sbjct: 215 ECRYVASSSKDGSVRIWDTTAGRCERILT--GHTQSVTCLRWGGD-GLLYSASQDRTIKV 271
Query: 169 WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLER 228
WR D ++ H +N +ALS D + TG+ + +P + + SL ++ ER
Sbjct: 272 WRAHDGVLCRTL-QGHGHWVNTMALSTDYALRTGAFEPAEA--SVNPQDLQGSLQELKER 328
Query: 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI--LCMAVVS 286
S N L L SG+ D ++ +W ED + + GH I + + S
Sbjct: 329 ALSRYN-LMRGQGPERLVSGSDDFTLFLWSPAEDKKPLT---RMTGHQALINQVLFSPDS 384
Query: 287 DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346
+V S S DK+I++W G Y LA L GH V +A + D S L+ SGS
Sbjct: 385 RIVASASFDKSIKLWDGRTGKY--LASLRGHVAAVYQIAWSAD---------SRLLVSGS 433
Query: 347 LDCDIKVWQI 356
D +KVW +
Sbjct: 434 SDSTLKVWDV 443
|
Pongo abelii (taxid: 9601) |
| >sp|Q9NVX2|NLE1_HUMAN Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 167/370 (45%), Gaps = 56/370 (15%)
Query: 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNT----FSSELDQEFLSNNNIV 64
C ++L+GH+ V S+A + GK+L +GS D VR WD +T F+ + + ++ + +
Sbjct: 106 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWS 165
Query: 65 AVGKGAVKSLVVLADKLFSAHQDHKIRVW------KINNQEPDHQKY-TRLATLPTLGDR 117
G+ KL S ++ +I +W ++ H K+ T L+ P +
Sbjct: 166 PDGR-----------KLASGCKNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANP 214
Query: 118 AIKLLMPKNH---VQI------RRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168
+ + + V+I R + T H +V+ L D LLYS S DRTIK+
Sbjct: 215 ECRYVASSSKDGSVRIWDTTAGRCERILT--GHTQSVTCLRWGGD-GLLYSASQDRTIKV 271
Query: 169 WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLER 228
WR D ++ H +N +ALS D + TG+ + +P + + SL ++ ER
Sbjct: 272 WRAHDGVLCRTL-QGHGHWVNTMALSTDYALRTGAFEPAEA--SVNPQDLQGSLQELKER 328
Query: 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI--LCMAVVS 286
S N L L SG+ D ++ +W ED + + GH I + + S
Sbjct: 329 ALSRYN-LVRGQGPERLVSGSDDFTLFLWSPAEDKKPLT---RMTGHQALINQVLFSPDS 384
Query: 287 DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346
+V S S DK+I++W G Y LA L GH V +A + D S L+ SGS
Sbjct: 385 RIVASASFDKSIKLWDGRTGKY--LASLRGHVAAVYQIAWSAD---------SRLLVSGS 433
Query: 347 LDCDIKVWQI 356
D +KVW +
Sbjct: 434 SDSTLKVWDV 443
|
Homo sapiens (taxid: 9606) |
| >sp|Q58D20|NLE1_BOVIN Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 104/373 (27%), Positives = 168/373 (45%), Gaps = 62/373 (16%)
Query: 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNT----FSSELDQEFLSNNNIV 64
C ++L+GH+ V S+A + GK+L +GS D VR WD +T F+ + + ++ + +
Sbjct: 107 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 166
Query: 65 AVGKGAVKSLVVLADKLFSAHQDHKIRVW------KINNQEPDHQKY-TRLATLPTLGDR 117
GK KL S ++ +I +W ++ H K+ T L+ P +
Sbjct: 167 PDGK-----------KLASGCKNGQILLWDPSTGKQVGRALTGHSKWITALSWEPLHANP 215
Query: 118 AIKLLMPKNH---VQI------RRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168
+ + + V++ R +T T H +V+ L D LLYS S DRTIK+
Sbjct: 216 ECRYVASSSKDGSVRVWDTTAGRCERTLT--GHAQSVTCLRWGGD-GLLYSASQDRTIKV 272
Query: 169 WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS---ADKKIKVWRRSPGNKKHSLVDV 225
WR D ++ H +N +ALS D + TG+ A+ + + + SL ++
Sbjct: 273 WRAHDGVLCRTL-QGHGHWVNTMALSTDYALRTGAFEPAEASVNA-----QDLRGSLQEL 326
Query: 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI--LCMA 283
ER S N L L SG+ D ++ +W ED + + GH I + +
Sbjct: 327 KERALSRYN-LVRGQGPERLVSGSDDFTLFLWSPAEDKKPL---ARMTGHQALINQVVFS 382
Query: 284 VVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC 343
S ++ S S DK+I++W G Y LA L GH V +A + D S L+
Sbjct: 383 PDSRVIASASFDKSIKLWDGRTGKY--LASLRGHVAAVYQIAWSAD---------SRLLV 431
Query: 344 SGSLDCDIKVWQI 356
SGS D +KVW +
Sbjct: 432 SGSSDSTLKVWDV 444
|
Bos taurus (taxid: 9913) |
| >sp|C4YFX2|TUP1_CANAW Transcriptional repressor TUP1 OS=Candida albicans (strain WO-1) GN=TUP1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 134/304 (44%), Gaps = 74/304 (24%)
Query: 21 YVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL- 77
Y+ S+ + GK L TG+ D +R WD LS I+ + +G + + L
Sbjct: 256 YIRSVCFSPDGKLLATGAEDKLIRIWD------------LSTKRIIKILRGHEQDIYSLD 303
Query: 78 ----ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRH 133
D+L S D +R+W + R
Sbjct: 304 FFPDGDRLVSGSGDRSVRIWDL------------------------------------RT 327
Query: 134 KTCTWVHHV-DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI------TNAHDD 186
C+ + D V+ +A++ D L+ + S DRT+++W ++ +E + N H+D
Sbjct: 328 SQCSLTLSIEDGVTTVAVSPDGKLIAAGSLDRTVRVWDSTTGFLVERLDSGNENGNGHED 387
Query: 187 AINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLE-RHNSGINALALSCDGSV 244
++ +VA S++G+ + +GS D+ +K+W + K S +V H + ++ + D
Sbjct: 388 SVYSVAFSNNGEQIASGSLDRTVKLWHLEGKSDKKSTCEVTYIGHKDFVLSVCCTPDNEY 447
Query: 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV------VSDLVCSGSADKTI 298
+ SG+ DR +I W++ GN L++ L+GH S++ +AV + +GS D
Sbjct: 448 ILSGSKDRGVIFWDQAS--GNPLLM--LQGHRNSVISVAVSLNSKGTEGIFATGSGDCKA 503
Query: 299 RIWR 302
RIW+
Sbjct: 504 RIWK 507
|
Represses transcription by RNA polymerase II. Represses genes responsible for initiating filamentous growth and this repression is lifted under inducing environmental conditions. Candida albicans (strain WO-1) (taxid: 294748) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 362 | ||||||
| 224133416 | 346 | predicted protein [Populus trichocarpa] | 0.955 | 1.0 | 0.786 | 1e-155 | |
| 224119218 | 346 | predicted protein [Populus trichocarpa] | 0.955 | 1.0 | 0.772 | 1e-153 | |
| 255540791 | 401 | F-box and wd40 domain protein, putative | 0.964 | 0.870 | 0.754 | 1e-152 | |
| 225457146 | 409 | PREDICTED: uncharacterized WD repeat-con | 0.950 | 0.841 | 0.755 | 1e-148 | |
| 449469679 | 383 | PREDICTED: myosin heavy chain kinase B-l | 0.955 | 0.903 | 0.711 | 1e-141 | |
| 356513569 | 394 | PREDICTED: uncharacterized WD repeat-con | 0.975 | 0.895 | 0.683 | 1e-139 | |
| 449527789 | 343 | PREDICTED: myosin heavy chain kinase B-l | 0.936 | 0.988 | 0.710 | 1e-138 | |
| 356507208 | 418 | PREDICTED: vegetative incompatibility pr | 0.975 | 0.844 | 0.681 | 1e-135 | |
| 359473323 | 427 | PREDICTED: uncharacterized WD repeat-con | 0.958 | 0.812 | 0.671 | 1e-134 | |
| 147773984 | 507 | hypothetical protein VITISV_004097 [Viti | 0.958 | 0.684 | 0.676 | 1e-134 |
| >gi|224133416|ref|XP_002321562.1| predicted protein [Populus trichocarpa] gi|222868558|gb|EEF05689.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 276/351 (78%), Positives = 309/351 (88%), Gaps = 5/351 (1%)
Query: 9 HHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
HHCLTTLKGH+SY+SSL LAGKFLY+GS D E+R W N SE+DQE LSNN +VAVG
Sbjct: 1 HHCLTTLKGHSSYISSLTLAGKFLYSGS-DKEIRLWKRNPLDSEIDQENLSNN-VVAVGN 58
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
GAVKSLVV A+KLFSAHQD+KIRVWK NNQE + QKYTRLATLPTLGDRA K L+P+N V
Sbjct: 59 GAVKSLVVWAEKLFSAHQDNKIRVWKANNQETNQQKYTRLATLPTLGDRAFKSLLPRNQV 118
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
QIRRHKTCTWVHHVD VSALAL+ DE+ LYSVSWDRTIKIWRT+DFKCLES+ NAHDDAI
Sbjct: 119 QIRRHKTCTWVHHVDTVSALALSSDESHLYSVSWDRTIKIWRTNDFKCLESVANAHDDAI 178
Query: 189 NAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248
NAVALS+DG+VYTGSADKKIKVWR+S KHSLV LE+H SGINALALS DGSVLYSG
Sbjct: 179 NAVALSNDGNVYTGSADKKIKVWRKSSEENKHSLVATLEKHMSGINALALSTDGSVLYSG 238
Query: 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNY 308
ACDRSI+VWEK +DDGN++V+GALRGHT+SILC+AVVSDLV SGSADKTIRIWRG+DR+Y
Sbjct: 239 ACDRSIVVWEK-DDDGNMVVLGALRGHTQSILCLAVVSDLVFSGSADKTIRIWRGVDRSY 297
Query: 309 TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359
+CLAVLEGH GPVKCL A+I DR SSD S+L+ SGSLDCDIKVWQI+ P
Sbjct: 298 SCLAVLEGHGGPVKCLTASI--DRRSSSDASFLLYSGSLDCDIKVWQINVP 346
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119218|ref|XP_002318017.1| predicted protein [Populus trichocarpa] gi|222858690|gb|EEE96237.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/351 (77%), Positives = 305/351 (86%), Gaps = 5/351 (1%)
Query: 9 HHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
HHCLTTLKGH SY+SSL L GKFLY+GS E+R W N+ SE+D E LSNN +VAVGK
Sbjct: 1 HHCLTTLKGHTSYISSLNLVGKFLYSGSG-KEIRLWKGNSLDSEIDHENLSNN-VVAVGK 58
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
GAVKSLVVL DKLFSAHQDHKIRVWKINNQE D QKYTRLATLPTLGDRA K L+PKN V
Sbjct: 59 GAVKSLVVLEDKLFSAHQDHKIRVWKINNQESDKQKYTRLATLPTLGDRAFKSLLPKNQV 118
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
QIRRHKTCTWVHHVD VSA+AL+ DE+LLYSVSWDRTIKIWRT++FKCLES+ NAHDDAI
Sbjct: 119 QIRRHKTCTWVHHVDTVSAIALSSDESLLYSVSWDRTIKIWRTNNFKCLESVANAHDDAI 178
Query: 189 NAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248
NAVALS+D VYTGSADK IKVWR+S KHSLV LE+HNSGINALALS DGSVLYSG
Sbjct: 179 NAVALSNDDSVYTGSADKNIKVWRKSSKESKHSLVATLEKHNSGINALALSTDGSVLYSG 238
Query: 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNY 308
ACDRSI+VW K + GN++VVGALRGH++SILC+AVVSDL+ SGSADKTIRIWRG D++Y
Sbjct: 239 ACDRSIVVWGK-DGGGNMVVVGALRGHSQSILCLAVVSDLLFSGSADKTIRIWRGSDKSY 297
Query: 309 TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359
+CLAVLEGHRGPVKCL A ID+D +++D SYL+ SGSLDCDI+VWQI+ P
Sbjct: 298 SCLAVLEGHRGPVKCLTATIDHD--NTTDASYLLYSGSLDCDIRVWQINVP 346
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540791|ref|XP_002511460.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223550575|gb|EEF52062.1| F-box and wd40 domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 270/358 (75%), Positives = 311/358 (86%), Gaps = 9/358 (2%)
Query: 9 HHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSE-LDQEFLSNNNIVAVG 67
HHCL TLKGH +Y+SSL LAGKFLY+GSSD E+RSW+ N SE +DQE L N+ +VA G
Sbjct: 45 HHCLATLKGHTTYISSLTLAGKFLYSGSSDKEIRSWNRNPLDSEVIDQENLCNS-VVAAG 103
Query: 68 KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPD---HQKYTRLATLPTLGDRAIKLLMP 124
KGAVKSLVVLADKLFSAHQDHKIRVW+I++QE D QKYT LATLPTLGDRA K+L+P
Sbjct: 104 KGAVKSLVVLADKLFSAHQDHKIRVWRISSQELDNQHQQKYTHLATLPTLGDRAFKILLP 163
Query: 125 KNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH 184
KN VQIRRHKTCTWVHHVD VSA++L++DE+LLYSVSWDRT+KIWRTSDFKCLESI NAH
Sbjct: 164 KNQVQIRRHKTCTWVHHVDTVSAISLSRDESLLYSVSWDRTLKIWRTSDFKCLESIANAH 223
Query: 185 DDAINAVALSDDGDVYTGSADKKIKVWRRSPGN-KKHSLVDVLERHNSGINALALSCDGS 243
DDAINAVA+SDDGDVYTGSADKKIKVWR+S G KKHSLV LE+HNSGINALALS DG
Sbjct: 224 DDAINAVAVSDDGDVYTGSADKKIKVWRKSTGEKKKHSLVGTLEKHNSGINALALSTDGY 283
Query: 244 VLYSGACDRSIIVWEKEED-DGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWR 302
+LYSGA DRSI+VWEK++D G+++V+GALRGH +SILC+ VVSDLVCSGS DKTIR+WR
Sbjct: 284 LLYSGASDRSIVVWEKDDDGGGDMVVLGALRGHKQSILCLVVVSDLVCSGSGDKTIRVWR 343
Query: 303 GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360
+DRNY CLAV EGH+GPVKCL A ID+ +SS+TSYL+ SGSLDCDIKVWQ+ P+
Sbjct: 344 CVDRNYCCLAVFEGHKGPVKCLTATIDHH--NSSETSYLIYSGSLDCDIKVWQLHVPI 399
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457146|ref|XP_002280390.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/347 (75%), Positives = 299/347 (86%), Gaps = 3/347 (0%)
Query: 15 LKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSL 74
KGH SYVSSLALAG FL++GSSD E+R W+ N +SELD E +SNN +VAVGKGAVKS+
Sbjct: 66 FKGHTSYVSSLALAGNFLFSGSSDKEIRLWEQN-LNSELDHENISNN-VVAVGKGAVKSM 123
Query: 75 VVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHK 134
VVL DKLFSAHQDHKIRVWKIN+Q+P HQK TRLATLPTLGDRAIKLL P NHVQIRRHK
Sbjct: 124 VVLGDKLFSAHQDHKIRVWKINDQDPHHQKCTRLATLPTLGDRAIKLLTPNNHVQIRRHK 183
Query: 135 TCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS 194
CTWVHHVD VS LAL++D +LLYSVSWDR++KIWRT+DFKCLES+ NAHDDAINA+ALS
Sbjct: 184 KCTWVHHVDTVSVLALSEDNSLLYSVSWDRSLKIWRTTDFKCLESVGNAHDDAINALALS 243
Query: 195 DDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSI 254
DG +YTGSADK IKVWR++P +KKHS V LE+HNSGINALALS DGSVLYSGA DRSI
Sbjct: 244 HDGYIYTGSADKTIKVWRKAPEDKKHSQVATLEKHNSGINALALSTDGSVLYSGASDRSI 303
Query: 255 IVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVL 314
+VWEK+ GN++VVGALRGH+KSILC+AVVSD+V SGSAD TIRIWRGI ++Y+CLA+L
Sbjct: 304 VVWEKDY-SGNMVVVGALRGHSKSILCLAVVSDVVFSGSADNTIRIWRGIHKSYSCLAIL 362
Query: 315 EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLV 361
EGH GPVKCL AA D ++ TSYLV SGSLDCDIKVWQI PL+
Sbjct: 363 EGHTGPVKCLTAATDCYNPSNTSTSYLVYSGSLDCDIKVWQIFIPLL 409
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469679|ref|XP_004152546.1| PREDICTED: myosin heavy chain kinase B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 251/353 (71%), Positives = 289/353 (81%), Gaps = 7/353 (1%)
Query: 11 CLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSS--ELDQEFLSNNNIVAVGK 68
C TT KGH+SY+SSL LAGKFLY+GSSD E+RSW N + E +EF NN+V G
Sbjct: 34 CQTTFKGHSSYISSLTLAGKFLYSGSSDREIRSWRRNLSQNCEENQEEF--QNNMVTAGH 91
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
GAVKSLVV +DKL+SAHQDHKIRVWKI N HQKYTRLATLPTLGDR KLL P N V
Sbjct: 92 GAVKSLVVSSDKLYSAHQDHKIRVWKIFNDFDHHQKYTRLATLPTLGDRTAKLLTPNNQV 151
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
QIRRHK CTWVHHVD VSALAL+ DE+LLYSVSWDRT+KIWRTSDFKCLES+ AHDDAI
Sbjct: 152 QIRRHKKCTWVHHVDTVSALALSNDESLLYSVSWDRTLKIWRTSDFKCLESVAGAHDDAI 211
Query: 189 NAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248
NAVAL+ DGDVYTGS DK+IKVWR++P K+H LV LE+H+SGINALAL+ DGSVL+SG
Sbjct: 212 NAVALAGDGDVYTGSTDKRIKVWRKNPDGKRHFLVQTLEKHSSGINALALTEDGSVLFSG 271
Query: 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW-RGIDRN 307
ACDRS++VWEKEE G + +VG LRGH+K+ILC+AVV + VCSGSADKTIRIW + + N
Sbjct: 272 ACDRSVLVWEKEEGGGLMELVGVLRGHSKAILCLAVVLNFVCSGSADKTIRIWKKAVAGN 331
Query: 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360
Y CL VLEGH GPVKCLAAA+ DR + +D+S++V SGSLDCDIK WQIS PL
Sbjct: 332 YVCLRVLEGHNGPVKCLAAAV--DRFNPNDSSFMVYSGSLDCDIKAWQISVPL 382
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513569|ref|XP_003525485.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/363 (68%), Positives = 292/363 (80%), Gaps = 10/363 (2%)
Query: 5 SVVDHHCLTTLKGHNS---YVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNN 61
S H CLTTLK H S Y+S L LAG LYTGSSD E+RSW+ F + + +NN
Sbjct: 34 STTSHSCLTTLKPHTSSSVYISCLTLAGNLLYTGSSDREIRSWNHTHF---IQKPTTTNN 90
Query: 62 NIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDH-QKYTRLATLPTLGDRAIK 120
N+V GKGAVKS+VV +DKLF+AHQD+KIRVW++ N E D QKYTR+ATLPTLGDR K
Sbjct: 91 NVVIAGKGAVKSIVVHSDKLFTAHQDNKIRVWRVTNLEHDQNQKYTRVATLPTLGDRLTK 150
Query: 121 LLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
LL+PKN V+IRRHK CTWVHHVD VS+LAL+KD T LYSVSWDRTIK+WRT DF CLES+
Sbjct: 151 LLLPKNQVRIRRHKKCTWVHHVDTVSSLALSKDGTFLYSVSWDRTIKVWRTKDFACLESV 210
Query: 181 TNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240
+AHDDAINAVA+S DG VYTGSADK+I+VW++ G KKHSLVD LE+HNSGINALALS
Sbjct: 211 RDAHDDAINAVAVSYDGYVYTGSADKRIRVWKKLEGEKKHSLVDTLEKHNSGINALALSA 270
Query: 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRI 300
DGSVLYSGACDRSI+V EK + +G +LVVGALRGHT+SILC+AVVSDLVCSGS DKT+RI
Sbjct: 271 DGSVLYSGACDRSILVSEKGK-NGKLLVVGALRGHTRSILCLAVVSDLVCSGSEDKTVRI 329
Query: 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCD--SSDTSYLVCSGSLDCDIKVWQISF 358
WRG+ + Y+CLAVLEGHR P+K L AA+D D S + S+LV S SLDCD+KVWQ+
Sbjct: 330 WRGVQKEYSCLAVLEGHRSPIKSLTAAVDRSEQDPNSEEPSFLVYSASLDCDVKVWQVFV 389
Query: 359 PLV 361
PL+
Sbjct: 390 PLL 392
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527789|ref|XP_004170892.1| PREDICTED: myosin heavy chain kinase B-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust.
Identities = 246/346 (71%), Positives = 284/346 (82%), Gaps = 7/346 (2%)
Query: 18 HNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSS--ELDQEFLSNNNIVAVGKGAVKSLV 75
H+SY+SSL LAGKFLY+GSSD E+RSW N + E +EF NN+V G GAVKSLV
Sbjct: 1 HSSYISSLTLAGKFLYSGSSDREIRSWRRNLSQNCEENQEEF--QNNMVTAGHGAVKSLV 58
Query: 76 VLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKT 135
V +DKL+SAHQDHKIRVWKI N HQKYTRLATLPTLGDR KLL P N VQIRRHK
Sbjct: 59 VSSDKLYSAHQDHKIRVWKIFNDFDHHQKYTRLATLPTLGDRTAKLLTPNNQVQIRRHKK 118
Query: 136 CTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD 195
CTWVHHVD VSALAL+ DE+LLYSVSWDRT+KIWRTSDFKCLES+ AHDDAINAVAL+
Sbjct: 119 CTWVHHVDTVSALALSNDESLLYSVSWDRTLKIWRTSDFKCLESVAGAHDDAINAVALAG 178
Query: 196 DGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255
DGDVYTGS DK+IKVWR++P K+H LV LE+H+SGINALAL+ DGSVL+SGACDRS++
Sbjct: 179 DGDVYTGSTDKRIKVWRKNPDGKRHFLVQTLEKHSSGINALALTEDGSVLFSGACDRSVL 238
Query: 256 VWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW-RGIDRNYTCLAVL 314
VWEKEE G + +VG LRGH+K+ILC+AVV + VCSGSADKTIRIW + + NY CL VL
Sbjct: 239 VWEKEEGGGLMELVGVLRGHSKAILCLAVVLNFVCSGSADKTIRIWKKAVAGNYVCLRVL 298
Query: 315 EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360
EGH GPVKCLAAA+ DR + +D+S++V SGSLDCDIK WQIS PL
Sbjct: 299 EGHNGPVKCLAAAV--DRFNPNDSSFMVYSGSLDCDIKAWQISVPL 342
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507208|ref|XP_003522361.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/367 (68%), Positives = 300/367 (81%), Gaps = 14/367 (3%)
Query: 7 VDHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWD-CNTFSSELDQEFLSNNNIVA 65
V HHCLTTLKGH SY+SSL L+GKFLYTGSSD E+RSW+ SS + +NN+ V
Sbjct: 54 VYHHCLTTLKGHTSYISSLTLSGKFLYTGSSDREIRSWNRIPENSSTDNSNNNNNNSTVL 113
Query: 66 VGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDH--QKYTRLATLPTLGDRAIKLLM 123
GKGAVKSLV+ ++KLFSAHQD+KIRVWKI+N + DH QKYT +ATLPTLGDRA K+L+
Sbjct: 114 AGKGAVKSLVIQSNKLFSAHQDNKIRVWKISNNDDDHHHQKYTHVATLPTLGDRASKILI 173
Query: 124 PKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA 183
PKN VQIRRHK CTWVHHVD VSALAL+KD LLYSVSWDRT+KIW+T DF CLES+ NA
Sbjct: 174 PKNKVQIRRHKKCTWVHHVDTVSALALSKDGALLYSVSWDRTLKIWKTKDFTCLESLANA 233
Query: 184 HDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243
HDDAINAVA+S DG VYTGSADK+IKVW++ G KKH+L++ LE+HNSG+NALALS D +
Sbjct: 234 HDDAINAVAVSYDGCVYTGSADKRIKVWKKFAGEKKHTLIETLEKHNSGVNALALSSDEN 293
Query: 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRG 303
VLYSGACDR+I+VWEKE DDG + VVGALRGHT SILC++V +DLVCSGSADKTIR+WRG
Sbjct: 294 VLYSGACDRAILVWEKEGDDGKMGVVGALRGHTMSILCLSVAADLVCSGSADKTIRVWRG 353
Query: 304 -ID-RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDT-------SYLVCSGSLDCDIKVW 354
+D Y+CLAVLEGHRG +KC++A +D+ C++++T S+LV SG LDC IKVW
Sbjct: 354 SVDAHEYSCLAVLEGHRGSIKCISAVVDH--CNNTNTWSQSEALSFLVYSGGLDCHIKVW 411
Query: 355 QISFPLV 361
QI P +
Sbjct: 412 QILVPAI 418
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473323|ref|XP_003631291.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 241/359 (67%), Positives = 287/359 (79%), Gaps = 12/359 (3%)
Query: 9 HHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
HHC++TLKGH+SYV SLALAGKFLY+GSSD E+R W S + + SN+N VA+G
Sbjct: 75 HHCISTLKGHSSYVFSLALAGKFLYSGSSDKEIRIW-----SRDPSRLETSNDNGVALGN 129
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
GAVKSLVVL DKLFSAHQD KIRVWK++N P HQKY +ATLPTL DRA+KL N+V
Sbjct: 130 GAVKSLVVLGDKLFSAHQDQKIRVWKVDNDSP-HQKYKCMATLPTLSDRALKLFSASNYV 188
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
Q+RRHK CTWVHHVD +SALAL++D +LLYS SWDRT KIW+T+DF+CLES AHDDAI
Sbjct: 189 QVRRHKKCTWVHHVDTISALALSEDGSLLYSASWDRTFKIWKTTDFRCLESAEKAHDDAI 248
Query: 189 NAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248
NA+ LS DG VYTGSAD+KIKVW++ G KKH LV LE+H S +NALALS DGSVLYSG
Sbjct: 249 NALVLSTDGIVYTGSADRKIKVWKKHEGEKKHRLVATLEKHKSAVNALALSPDGSVLYSG 308
Query: 249 ACDRSIIVWEKE--EDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW-RGID 305
ACDRSIIVWEK+ G+++V GALRGHTK+ILC+A+VSDLV SGSADKT+RIW +G+
Sbjct: 309 ACDRSIIVWEKDTSSSGGHMVVAGALRGHTKAILCLAIVSDLVFSGSADKTVRIWKKGLQ 368
Query: 306 RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSS---DTSYLVCSGSLDCDIKVWQISFPLV 361
R+Y+CLAV EGHRGPVKCL AA+DN S+ D +YL+ SGSLDC+IKVWQ+ V
Sbjct: 369 RSYSCLAVFEGHRGPVKCLTAAVDNYNGRSNSDDDAAYLIYSGSLDCEIKVWQLRIQCV 427
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147773984|emb|CAN76269.1| hypothetical protein VITISV_004097 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/359 (67%), Positives = 288/359 (80%), Gaps = 12/359 (3%)
Query: 9 HHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
HHC++TLKGH+SYV SLALAGKFLY+GSSD E+R W + S L+ SN+N VA+G
Sbjct: 155 HHCISTLKGHSSYVFSLALAGKFLYSGSSDKEIRIWXRDP--SRLEX---SNDNGVALGN 209
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
GAVKSLVVL DKLFSAHQD KIRVWK++N P HQKY +ATLPTL DRA+KL N+V
Sbjct: 210 GAVKSLVVLGDKLFSAHQDQKIRVWKVDNDXP-HQKYKCMATLPTLSDRALKLFSASNYV 268
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
Q+RRHK CTWVHHVD +SALAL++D +LLYS SWDRT KIW+T+DF+CLES AHDDAI
Sbjct: 269 QVRRHKKCTWVHHVDTISALALSEDGSLLYSASWDRTFKIWKTTDFRCLESAEKAHDDAI 328
Query: 189 NAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248
NA+ LS DG VYTGSAD+KIKVW++ G KKH LV LE+H S +NALALS DGSVLYSG
Sbjct: 329 NALVLSTDGIVYTGSADRKIKVWKKHEGEKKHRLVATLEKHKSAVNALALSPDGSVLYSG 388
Query: 249 ACDRSIIVWEKEEDD--GNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW-RGID 305
ACDRSIIVWEK+ G+++V GALRGHTK+ILC+AVVSDLV SGSADKT+RIW +G+
Sbjct: 389 ACDRSIIVWEKDTSSSGGHMVVAGALRGHTKAILCLAVVSDLVFSGSADKTVRIWKKGLQ 448
Query: 306 RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSS---DTSYLVCSGSLDCDIKVWQISFPLV 361
R+Y+CLAV EGHRGPVKCL AA+DN S+ D +YL+ SGSLDC+IKVWQ+ V
Sbjct: 449 RSYSCLAVFEGHRGPVKCLTAAVDNYNGRSNSDDDAAYLIYSGSLDCEIKVWQLRIQCV 507
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 362 | ||||||
| TAIR|locus:2170061 | 388 | AT5G50120 "AT5G50120" [Arabido | 0.958 | 0.894 | 0.616 | 3.1e-115 | |
| TAIR|locus:2032452 | 415 | AT1G24130 "AT1G24130" [Arabido | 0.969 | 0.845 | 0.602 | 8.7e-111 | |
| TAIR|locus:2024031 | 418 | AT1G24530 "AT1G24530" [Arabido | 0.925 | 0.801 | 0.481 | 8.5e-81 | |
| TAIR|locus:2066276 | 465 | AT2G26490 "AT2G26490" [Arabido | 0.897 | 0.698 | 0.428 | 2.9e-71 | |
| TAIR|locus:2010157 | 471 | AT1G49450 "AT1G49450" [Arabido | 0.917 | 0.704 | 0.418 | 8.2e-67 | |
| TAIR|locus:2085929 | 473 | AT3G18950 "AT3G18950" [Arabido | 0.917 | 0.701 | 0.411 | 6.7e-65 | |
| TAIR|locus:2116194 | 495 | AT4G34380 "AT4G34380" [Arabido | 0.878 | 0.642 | 0.397 | 9.7e-64 | |
| TAIR|locus:2074825 | 469 | AT3G50390 "AT3G50390" [Arabido | 0.903 | 0.697 | 0.401 | 1.6e-63 | |
| TAIR|locus:2015423 | 351 | AT1G47610 "AT1G47610" [Arabido | 0.872 | 0.900 | 0.416 | 3.3e-63 | |
| TAIR|locus:2083710 | 415 | AT3G51930 "AT3G51930" [Arabido | 0.900 | 0.785 | 0.388 | 3.9e-60 |
| TAIR|locus:2170061 AT5G50120 "AT5G50120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 225/365 (61%), Positives = 280/365 (76%)
Query: 9 HHCLTTLKGHN-SYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAV- 66
H C+ TL H SY+SSL LAGK LYTGS+D VR W+ NT E E SN +++
Sbjct: 27 HQCIATLVCHTASYISSLTLAGKRLYTGSNDGVVRLWNANTL--ETLAEASSNGDVITGE 84
Query: 67 --GKGAVKSLVVLADKLFSAHQDHKIRVWKINNQ-EPD--HQKYTRLATLPTLGDRAIKL 121
G GAVKSLV+LADKLF+AHQDHKIRVWKIN+ E D +KY LAT+PT+ DR K
Sbjct: 85 RGGGGAVKSLVILADKLFTAHQDHKIRVWKINDVVEEDVGGKKYMHLATMPTISDRFAKC 144
Query: 122 LMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT 181
LMPKN V+IRRHK +WVHHVDAVS LAL++D TLLYSVSWDRT+KIWRT+DFKCLES T
Sbjct: 145 LMPKNQVEIRRHKKASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFT 204
Query: 182 NAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGN------KKHSLVDVLERHNSGINA 235
NAHDDAINAVALS++GD+YTGS+D++IKVWR++ +KHSLV +L HNSGINA
Sbjct: 205 NAHDDAINAVALSENGDIYTGSSDQRIKVWRKNINEENVKKKRKHSLVAILSEHNSGINA 264
Query: 236 LALS-CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSA 294
LALS +GS+L+SG D SI+VWE++ D G+I+VVG LRGHT+S+LC+AVVSD++CSGSA
Sbjct: 265 LALSGTNGSLLHSGGSDGSILVWERD-DGGDIVVVGMLRGHTESVLCLAVVSDILCSGSA 323
Query: 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354
DKT+R+W+ ++Y+CLA+LEGH GPVKCL A + R + + SY + SG LD +KVW
Sbjct: 324 DKTVRLWKCSAKDYSCLAMLEGHLGPVKCLTGAFRDSR-KADEASYHIYSGGLDSQVKVW 382
Query: 355 QISFP 359
Q+ P
Sbjct: 383 QVLVP 387
|
|
| TAIR|locus:2032452 AT1G24130 "AT1G24130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
Identities = 220/365 (60%), Positives = 273/365 (74%)
Query: 1 QHNLSVVDHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNT-FSSELDQEFLS 59
QH S VDHHCL TLK +SYVSSLA++ K LYTGSS++E+R W FS E
Sbjct: 51 QHQSSSVDHHCLATLKDKSSYVSSLAVSDKLLYTGSSNSEIRVWPREPPFSPEYSTG--D 108
Query: 60 NNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDH-QKYTRLATLPTLGDRA 118
+ N+VA G G VKSLV+L DKL SAHQDHKIRVWKI ++ QKY +ATLPT+ DR
Sbjct: 109 DRNVVANGNGGVKSLVILGDKLISAHQDHKIRVWKIIDESNRRGQKYKCVATLPTMNDRF 168
Query: 119 IKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLE 178
L K++V++RRHK CTWVHHVDAVS+LAL++D +LLYS SWDR+ KIWRTSDFKCL+
Sbjct: 169 KTLFSSKSYVEVRRHKKCTWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWRTSDFKCLD 228
Query: 179 SITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238
SI AHDDAINA+ +S DG VYTGSADKKIKVW + +KKHSLV L +H S +NALA+
Sbjct: 229 SIEKAHDDAINAIVVSKDGFVYTGSADKKIKVWNKK--DKKHSLVATLTKHLSAVNALAI 286
Query: 239 SCDGSVLYSGACDRSIIVWEK----EEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSA 294
S DG VLYSGACDRSI+VWE+ ++++ ++ VVGALRGH K+I+C+AV SDLV SGSA
Sbjct: 287 SEDGKVLYSGACDRSILVWERLINGDDEELHMSVVGALRGHRKAIMCLAVASDLVLSGSA 346
Query: 295 DKTIRIWR-GI--DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351
DK++R+WR G+ Y+CLAVLEGH PVK LA ++ +D +SD S +V SGSLD +
Sbjct: 347 DKSLRVWRRGLMEKEGYSCLAVLEGHTKPVKSLAVSV-SDSDSNSDYSCMVYSGSLDLSL 405
Query: 352 KVWQI 356
KVW +
Sbjct: 406 KVWNL 410
|
|
| TAIR|locus:2024031 AT1G24530 "AT1G24530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 172/357 (48%), Positives = 238/357 (66%)
Query: 5 SVVDHHCLTT---LKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNN 61
+V H +T+ L+ + V+ LA+ G +L+ S +EV +D + LD F +
Sbjct: 66 TVTVSHSVTSSFKLRERSLPVTCLAVNGGYLFAVSG-HEVSIYD-RDMCAHLDT-FNGQD 122
Query: 62 NIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKL 121
G VKS+ +K+F+AHQD KI VWK+ + Y +L TLPTL DR +
Sbjct: 123 PF----SGTVKSVGFSGEKIFTAHQDGKIGVWKLTAKSG----YKQLTTLPTLNDRLRRF 174
Query: 122 LMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT 181
+PKN+VQ+RRHK W+ H DAV+ALA++ + +YSVSWD+T+KIWR SD +C ESI
Sbjct: 175 ALPKNYVQVRRHKKRLWIEHADAVTALAVS--DGFIYSVSWDKTLKIWRASDLRCKESI- 231
Query: 182 NAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241
AHDDA+NA+A+S +G VYTGSAD++I+VW + G K+H+LV LE+H S +NALAL+ D
Sbjct: 232 KAHDDAVNAIAVSTNGTVYTGSADRRIRVWAKPTGEKRHTLVATLEKHKSAVNALALNDD 291
Query: 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW 301
GSVL+SG+CDRSI+VWE+E+ + V GALRGH K+IL + VSDL+ SGSAD+T+RIW
Sbjct: 292 GSVLFSGSCDRSILVWEREDTSNYMAVRGALRGHDKAILSLFNVSDLLLSGSADRTVRIW 351
Query: 302 R-GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
R G D +Y+CL VL GH PVK LAA + + D + SGSLD ++K W++S
Sbjct: 352 RRGPDSSYSCLEVLSGHTKPVKSLAAVREKEL----DDVVSIISGSLDGEVKCWKVS 404
|
|
| TAIR|locus:2066276 AT2G26490 "AT2G26490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 149/348 (42%), Positives = 214/348 (61%)
Query: 14 TLKGHNSYVSSLALAGKFLYTGSSDNEVRSW-DCNTFSSELDQEFLSNNNIVAVGKGAVK 72
+L ++ SLA LYTGS +R W + FS+ F N+ G VK
Sbjct: 91 SLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNLKEFSA-----FKCNS-------GLVK 138
Query: 73 SLVVLADKLFSAHQDHKIRVWKINNQEPDHQK-YTRLATLPTLGDRAIKLLMPKNHVQIR 131
++V+ +K+F+ HQD KIRVWK++ P +Q + R TLPTL D L P+N+V+++
Sbjct: 139 AIVISGEKIFTGHQDGKIRVWKVS---PKNQSLHKRSGTLPTLKDIFKASLKPRNYVEVK 195
Query: 132 RHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAV 191
+H+T W+ H DAVS L+L ++ LLYS SWDRTIK+WR +D KCLESI AHDDA+N+V
Sbjct: 196 KHRTALWIKHADAVSCLSLNDEQGLLYSASWDRTIKVWRIADSKCLESIP-AHDDAVNSV 254
Query: 192 ALSDDGDVYTGSADKKIKVWRRSPGNK--KHSLVDVLERHNSGINALALSCDGSVLYSGA 249
+ + V++GSAD +K W+R K KH+L+ L + S + ALA+S +G+ +Y G+
Sbjct: 255 VSTTEAIVFSGSADGTVKAWKRDQQGKYTKHTLMQTLTKQESAVTALAVSKNGAAVYFGS 314
Query: 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYT 309
D + WE+E+ + G L+GH ++LC+ V LV SGSADKTI +W+ +T
Sbjct: 315 SDGLVNFWEREKQ---LNYGGILKGHKLAVLCLEVAGSLVFSGSADKTICVWKRDGNIHT 371
Query: 310 CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
CL+VL GH GPVKCLA D + + D ++V SGSLD +KVW +S
Sbjct: 372 CLSVLTGHTGPVKCLAVEADREASERRDKKWIVYSGSLDKSVKVWGVS 419
|
|
| TAIR|locus:2010157 AT1G49450 "AT1G49450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 152/363 (41%), Positives = 218/363 (60%)
Query: 8 DHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSW-DCNTFSSELDQEFLSNNNIVAV 66
D+ + T+ +V SLA +G L+TGS +R W D FS F S +
Sbjct: 123 DNGLIGTVVRQEGHVYSLAASGDLLFTGSDSKNIRVWKDLKDFSG-----FKSTS----- 172
Query: 67 GKGAVKSLVVLAD-KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPK 125
G VK++VV D ++F+ HQD KIRVW+ + + P+ KY+R+ +LPTL + K + P+
Sbjct: 173 --GFVKAIVVTRDNRVFTGHQDGKIRVWRGSKKNPE--KYSRVGSLPTLKEFLTKSVNPR 228
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185
N+V++RR K + H DAVS L+L +D LLYS SWD+T+K+WR SD KCLESI AHD
Sbjct: 229 NYVEVRRRKNVLKIRHFDAVSCLSLNEDLGLLYSGSWDKTLKVWRLSDSKCLESI-EAHD 287
Query: 186 DAINAVALSDDGDVYTGSADKKIKVWRRSPGNK--KHSLVDVLERHNSGINALALSCDGS 243
DA+N V D V+TGSAD +KVW+R K KH LV VL + + + ALA++ +
Sbjct: 288 DAVNTVVSGFDDLVFTGSADGTLKVWKREVQGKEMKHVLVQVLMKQENAVTALAVNLTDA 347
Query: 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW-R 302
V+Y G+ D ++ WE+++ + G + GH ++LC+A L+ SG ADK I +W R
Sbjct: 348 VVYCGSSDGTVNFWERQK---YLTHKGTIHGHRMAVLCLATAGSLLLSGGADKNICVWKR 404
Query: 303 GIDRNYTCLAVLEGHRGPVKCLAAAID-----NDRCDSS---DTSYLVCSGSLDCDIKVW 354
D ++TCL+VL H GPVKCLAA + ND D D ++V SGSLD +KVW
Sbjct: 405 NGDGSHTCLSVLMDHEGPVKCLAAVEEAEEDHNDGDDGGEKGDQRWIVYSGSLDNSVKVW 464
Query: 355 QIS 357
+++
Sbjct: 465 RVT 467
|
|
| TAIR|locus:2085929 AT3G18950 "AT3G18950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 147/357 (41%), Positives = 215/357 (60%)
Query: 8 DHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSW-DCNTFSSELDQEFLSNNNIVAV 66
D+ + T+ + +V SLA +G L+TGS +R W D + F S +
Sbjct: 127 DNGLIGTIVRQDGHVYSLAASGDLLFTGSDSKNIRVWKDLKDHTG-----FKSTS----- 176
Query: 67 GKGAVKSLVVLAD-KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPK 125
G VK++V+ D ++F+ HQD KIRVW+ + + Y+R+ +LPTL + K + PK
Sbjct: 177 --GLVKAIVITGDNRIFTGHQDGKIRVWRGSKRRTGG--YSRIGSLPTLKEFLTKSVNPK 232
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185
N+V++RR K + H DAVS L+L ++ LLYS SWD+T+K+WR SD KCLESI AHD
Sbjct: 233 NYVEVRRRKNVLKIRHYDAVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKCLESI-QAHD 291
Query: 186 DAINAVALSDDGDVYTGSADKKIKVWRRSPGNK--KHSLVDVLERHNSGINALALSCDGS 243
DAIN VA D ++TGSAD +KVW+R K KH LV+VL + + + ALA++ +
Sbjct: 292 DAINTVAAGFDDLLFTGSADGTLKVWKRELQGKGTKHFLVNVLMKQENAVTALAVNITAA 351
Query: 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWR- 302
V+Y G+ D ++ WE ++ + G LRGH ++LC+A LV SG ADK I +WR
Sbjct: 352 VVYCGSSDGTVNFWEGQK---YLSHGGTLRGHRLAVLCLAAAGSLVLSGGADKNICVWRR 408
Query: 303 GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRC--DSSDTSYLVCSGSLDCDIKVWQIS 357
D +++CL+VL H GPVKCL A D+ + D ++V SGSLD +KVW+++
Sbjct: 409 NGDGSHSCLSVLMDHVGPVKCLTAVEDDGEGHREKGDQKWIVYSGSLDKSVKVWRVT 465
|
|
| TAIR|locus:2116194 AT4G34380 "AT4G34380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 139/350 (39%), Positives = 210/350 (60%)
Query: 21 YVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK 80
++ SLA +G LYTGS +R W + + F S++ G +K++V+ D+
Sbjct: 127 HIYSLAASGDLLYTGSDSKNIRVWK----NLKEHAGFKSSS-------GLIKAIVIFGDR 175
Query: 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140
+F+ HQD KIR+WK++ ++P K+ R+ TLPT + PK+ +++RR++
Sbjct: 176 IFTGHQDGKIRIWKVSKRKPG--KHKRVGTLPTFKSMVKSSVNPKHFMEVRRNRNSVKTK 233
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY 200
H DAVS+L+L + LLYS SWD TIK+WR +D KCLESI +AHDDAIN+V D V+
Sbjct: 234 HNDAVSSLSLDVELGLLYSSSWDTTIKVWRIADSKCLESI-HAHDDAINSVMSGFDDLVF 292
Query: 201 TGSADKKIKVWRRSPGNK--KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258
TGSAD +KVW+R K KH+L VL + + + ALA+ S++Y G+ D + WE
Sbjct: 293 TGSADGTVKVWKRELQGKGTKHTLAQVLLKQENAVTALAVKSQSSIVYCGSSDGLVNYWE 352
Query: 259 KEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRG--IDRNYTCLAVLEG 316
+ + G L+GH ++LC+ + +L+ SGSADK I +WR D+++ CL+VL G
Sbjct: 353 RSKRS---FTGGILKGHKSAVLCLGIAGNLLLSGSADKNICVWRRDPSDKSHQCLSVLTG 409
Query: 317 HRGPVKCLAAAIDNDR-CDSS--------DTSYLVCSGSLDCDIKVWQIS 357
H GPVKCLA ++ +R C D +++ SGSLD +KVW++S
Sbjct: 410 HMGPVKCLA--VEEERACHQGAKASVAEGDRKWIIYSGSLDKSVKVWRVS 457
|
|
| TAIR|locus:2074825 AT3G50390 "AT3G50390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 142/354 (40%), Positives = 214/354 (60%)
Query: 12 LTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNT-FSSELDQEFLSNNNIVAVGKGA 70
L +L ++ SLA +G LYTGS +R W + FSS F SN+ G
Sbjct: 91 LGSLVREEGHIYSLATSGDLLYTGSDSKNIRVWKNHVEFSS-----FKSNS-------GL 138
Query: 71 VKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQI 130
VK++V+ DK+F+ HQD KIRVWK ++E + + R+ T+P L D ++P ++
Sbjct: 139 VKAIVLAGDKIFTGHQDGKIRVWKAASKESNVHR--RVGTMPNLLDYIRNSIVPSSYFNF 196
Query: 131 -RRHKTCTWV--HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDA 187
RR+++ + H+DA+S LAL++D+ LLYS SWD+T K+WR SD +C+ES+ NAH+DA
Sbjct: 197 TRRNRSSAALGFRHLDAISCLALSEDKRLLYSGSWDKTFKVWRVSDLRCVESV-NAHEDA 255
Query: 188 INAVALSDDGDVYTGSADKKIKVWRRSPGNK--KHSLVDVLERHNSGINALALSCDGSVL 245
+NAV DG V+TGSAD +KVWRR K KH + L + + + A+A+ +++
Sbjct: 256 VNAVVSGFDGLVFTGSADGTVKVWRREDQAKDTKHFFSETLLKQDCAVTAIAVDQSATLV 315
Query: 246 YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGID 305
Y G+ D ++ WE+E + N G L+GH ++LC+ +L+ SGSAD IR+WR +
Sbjct: 316 YCGSSDGTVNFWERENNMKN---GGVLKGHKLAVLCLVAAGNLMFSGSADLGIRVWRRPE 372
Query: 306 RN--YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
+ CL+VL GH GPVKCLA D + S + ++V SGSLD +K+W++S
Sbjct: 373 GGGEHVCLSVLTGHAGPVKCLAVERDQESV-SGERRWIVYSGSLDRSVKMWRVS 425
|
|
| TAIR|locus:2015423 AT1G47610 "AT1G47610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 143/343 (41%), Positives = 205/343 (59%)
Query: 21 YVSSLALAGKFLYTGSSDNEVRSW-DCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD 79
++ SLA LYTGS +N +R W + N FS F SN+ G VK++V+ +
Sbjct: 26 HIYSLAATNDLLYTGSDNNYIRVWKNLNEFSG-----FKSNS-------GLVKAIVISRE 73
Query: 80 -KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTW 138
K+F+ HQD KIRVWK +++ P + YTR +LP L D + P N+V++RR +T W
Sbjct: 74 AKVFTGHQDGKIRVWKTSSKNP--RVYTRAGSLPALKDVLKSSVKPSNYVEVRRCRTALW 131
Query: 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD 198
+ H DAVS L+L +D+ LLYS SWDRT+K+WR D KC+ESI AHDDA+N+V ++
Sbjct: 132 IKHSDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCIESI-KAHDDAVNSVTTAESL- 189
Query: 199 VYTGSADKKIKVWRRSPGNKK--HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIV 256
V+TGSAD +KVW+R K+ HSL L + S + AL S +YSG+ D ++
Sbjct: 190 VFTGSADGTVKVWKREIRGKRTAHSLFQTLLKQESAVTALVTS--HMAVYSGSSDGAVNF 247
Query: 257 WEKEEDDGNILV-VGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLE 315
WE D +L + H ++LC+A L+ SG+ADK I +WR + +TC++VL
Sbjct: 248 WEM--GDKKLLKHCEVFKKHRLAVLCIAAAGKLLFSGAADKKICVWRREGKVHTCVSVLT 305
Query: 316 GHRGPVKCLAAAIDN--DRCDSSDTSYLVCSGSLDCDIKVWQI 356
GH GPVKCLA + + D D ++ SGSLD +KVW++
Sbjct: 306 GHTGPVKCLAVVEPSGGEEEDGGDGRLVLYSGSLDKSVKVWRV 348
|
|
| TAIR|locus:2083710 AT3G51930 "AT3G51930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 140/360 (38%), Positives = 206/360 (57%)
Query: 12 LTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
L L H VSSLAL G+FL + S ++ W + D + + G G+V
Sbjct: 54 LAVLSAHVGSVSSLALCGEFLLSASQGKDIIVWQ------QPDLKIFAK---FGQGDGSV 104
Query: 72 KSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIR 131
K+LV + K+F+AHQD +IRVWK++ + ++ + + TLPT D K + N+VQ R
Sbjct: 105 KALVSVGSKVFTAHQDSRIRVWKVSRRNSENA-FRLVDTLPTTKDYLGKFMKQSNYVQTR 163
Query: 132 RHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAV 191
R+ W+ H D++S LA+ ++YS SWD+T+K+WR SD KCLESI AHDDAIN +
Sbjct: 164 RNHKRLWIEHADSISCLAVHAG--IIYSGSWDKTLKVWRLSDLKCLESI-KAHDDAINGL 220
Query: 192 ALSDDGDVYTGSADKKIKVWRR----------SPGNKKHSLVDVLE-RHNSGINALALSC 240
++ DG VY+ SAD K+K+W + S + H L LE R +N++ +S
Sbjct: 221 -VAGDGRVYSASADGKVKIWGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVSG 279
Query: 241 DGSVLYSGACDRSIIVWEKEEDDGNILV--VG-ALRGHTKSILCMAVVSDLVCSGSADKT 297
DG+ +Y G D +I WEK+E +G+ +G RGH ++LCM VV ++VCSGSADK+
Sbjct: 280 DGNWVYGGGSDGFVIGWEKKEKEGDFEEWRLGFETRGHNMAVLCMCVVGEMVCSGSADKS 339
Query: 298 IRIWRGIDRNYTC-LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
I +WR C V+ GH GPVKCL A+ +N +++ SG LD ++VW +
Sbjct: 340 IGLWRREVTGMLCKFGVIHGHEGPVKCLQASPNN-----VGAGFMLYSGGLDKSLRVWWV 394
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 362 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-52 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-34 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-34 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-29 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-20 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-15 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 7e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 9e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.003 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 1e-52
Identities = 104/352 (29%), Positives = 142/352 (40%), Gaps = 70/352 (19%)
Query: 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
TLKGH V+ +A + GK L TGS D ++ WD T +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK---------GHT 51
Query: 69 GAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKN 126
G V+ + AD L S D IR+W + E
Sbjct: 52 GPVRDVAASADGTYLASGSSDKTIRLWDLETGE--------------------------- 84
Query: 127 HVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD 186
T H VS++A + D +L S S D+TIK+W KCL ++ H D
Sbjct: 85 -------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTD 136
Query: 187 AINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
+N+VA S DG V + S D IK+W + V L H +N++A S DG L
Sbjct: 137 WVNSVAFSPDGTFVASSSQDGTIKLWD----LRTGKCVATLTGHTGEVNSVAFSPDGEKL 192
Query: 246 YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSADKTIRIWRG 303
S + D +I +W+ +G LRGH + +A L+ SGS D TIR+W
Sbjct: 193 LSSSSDGTIKLWDLSTGK----CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248
Query: 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355
R C+ L GH V LA S D L SGS D I++W
Sbjct: 249 --RTGECVQTLSGHTNSVTSLAW--------SPDGKRL-ASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-34
Identities = 76/281 (27%), Positives = 112/281 (39%), Gaps = 57/281 (20%)
Query: 79 DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTW 138
L + D I+VW + E
Sbjct: 22 KLLATGSGDGTIKVWDLETGELLRTLKG-------------------------------- 49
Query: 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD 198
H V +A + D T L S S D+TI++W +C+ ++T H +++VA S DG
Sbjct: 50 --HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGR 106
Query: 199 -VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257
+ + S DK IKVW G +L H +N++A S DG+ + S + D +I +W
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRG----HTDWVNSVAFSPDGTFVASSSQDGTIKLW 162
Query: 258 EKEEDDGNILVVGALRGHTKSILCMAVVSDL--VCSGSADKTIRIWRGIDRNYTCLAVLE 315
D V L GHT + +A D + S S+D TI++W CL L
Sbjct: 163 ----DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL--STGKCLGTLR 216
Query: 316 GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
GH V +A S YL+ SGS D I+VW +
Sbjct: 217 GHENGVNSVAF---------SPDGYLLASGSEDGTIRVWDL 248
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 4e-34
Identities = 72/226 (31%), Positives = 106/226 (46%), Gaps = 23/226 (10%)
Query: 135 TCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS 194
T H V+ +A + D LL + S D TIK+W + L ++ H + VA S
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAAS 60
Query: 195 DDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS 253
DG + +GS+DK I++W G +L H S ++++A S DG +L S + D++
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGRILSSSSRDKT 116
Query: 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSADKTIRIWRGIDRNYTCL 311
I VW + + G L LRGHT + +A V S S D TI++W R C+
Sbjct: 117 IKVW--DVETGKCLTT--LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL--RTGKCV 170
Query: 312 AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
A L GH G V +A S + S S D IK+W +S
Sbjct: 171 ATLTGHTGEVNSVAF---------SPDGEKLLSSSSDGTIKLWDLS 207
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 9e-29
Identities = 72/254 (28%), Positives = 107/254 (42%), Gaps = 53/254 (20%)
Query: 10 HCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVG 67
C+ TL GH SYVSS+A G+ L + S D ++ WD T + +
Sbjct: 84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCLTTLRGHT------ 135
Query: 68 KGAVKSLVVLADKLF--SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPK 125
V S+ D F S+ QD I++W + +
Sbjct: 136 -DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA----------------------- 171
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185
T H V+++A + D L S S D TIK+W S KCL ++ H+
Sbjct: 172 -----------TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHE 219
Query: 186 DAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244
+ +N+VA S DG + +GS D I+VW G V L H + + +LA S DG
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG----ECVQTLSGHTNSVTSLAWSPDGKR 275
Query: 245 LYSGACDRSIIVWE 258
L SG+ D +I +W+
Sbjct: 276 LASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.1 bits (222), Expect = 7e-20
Identities = 95/365 (26%), Positives = 161/365 (44%), Gaps = 35/365 (9%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
L+GH ++S+A + G+ L +GSSD ++ WD + + L + +V K A+
Sbjct: 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS--LEGLHDSSVSKLAL 117
Query: 72 KSLVVLADKLFSAHQDHKIRVWKINNQE------PDHQKYTRLATLPTLGDRAIKLLMPK 125
S + L S+ D +++W ++ H + G
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177
Query: 126 NHVQIRRHKTCTWVH----HVDAVSALALTKD-ETLLYSVSWDRTIKIWRTSDFKCLESI 180
+++ +T + H D VS+LA + D L+ S S D TI++W S K L S
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237
Query: 181 TNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240
+ H D++ + D + +GS+D I++W + L+ L H+S + ++A S
Sbjct: 238 LSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSP 294
Query: 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKT 297
DG +L SG+ D ++ +W+ E G +L L+GH + ++ D LV GS D T
Sbjct: 295 DGKLLASGSSDGTVRLWDLE--TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352
Query: 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
IR+W R L LEGH V + S +V SGS D +++W +S
Sbjct: 353 IRLWD--LRTGKPLKTLEGH-SNVLSV---------SFSPDGRVVSSGSTDGTVRLWDLS 400
Query: 358 FPLVR 362
+
Sbjct: 401 TGSLL 405
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-17
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC 281
L L+ H G+ +A S DG +L +G+ D +I VW+ E + ++ L+GHT +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRD 56
Query: 282 MAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTS 339
+A +D + SGS+DKTIR+W C+ L GH V S
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGE--CVRTLTGHTSYVSS---------VAFSPDG 105
Query: 340 YLVCSGSLDCDIKVWQI 356
++ S S D IKVW +
Sbjct: 106 RILSSSSRDKTIKVWDV 122
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.1 bits (188), Expect = 2e-15
Identities = 78/305 (25%), Positives = 126/305 (41%), Gaps = 57/305 (18%)
Query: 5 SVVDHHCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNN 61
+ L+TL GH VSSLA + G + +GSSD +R WD +T L +
Sbjct: 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK-------LLRS 236
Query: 62 NIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKL 121
+ V S L S D IR+W + + + +
Sbjct: 237 TLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG-------------- 282
Query: 122 LMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT 181
H +V ++A + D LL S S D T+++W K L S+T
Sbjct: 283 -------------------HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323
Query: 182 -NAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238
H+ +++++ S DG V GS D I++W G +L +S + +++
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL-----EGHSNVLSVSF 378
Query: 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADK 296
S DG V+ SG+ D ++ +W D ++ L GHT + + D + SGS+D
Sbjct: 379 SPDGRVVSSGSTDGTVRLW----DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434
Query: 297 TIRIW 301
TIR+W
Sbjct: 435 TIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.6 bits (179), Expect = 2e-14
Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 27/237 (11%)
Query: 127 HVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR-TSDFKCLESITNAHD 185
V + + H D+++++A + D LL S S D TIK+W + K ++S+ HD
Sbjct: 50 LVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD 109
Query: 186 DAINAVALSD-DGDVY---TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241
+++ +ALS DG+ + S D +K+W S K L+ LE H+ + +LA S D
Sbjct: 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK---LIRTLEGHSESVTSLAFSPD 166
Query: 242 GSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKT 297
G +L SG+ D +I +W D + L GHT + +A D L+ SGS+D T
Sbjct: 167 GKLLASGSSLDGTIKLW----DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222
Query: 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354
IR+W + + L GH V S D S L SGS D I++W
Sbjct: 223 IRLWD-LSTGKLLRSTLSGHSDSV---------VSSFSPDGSLLA-SGSSDGTIRLW 268
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.5 bits (145), Expect = 4e-10
Identities = 46/218 (21%), Positives = 85/218 (38%), Gaps = 21/218 (9%)
Query: 10 HCLTTLKGH-NSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
+TL GH +S VSS + G L +GSSD +R WD + SS L ++
Sbjct: 233 LLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL--------RTLSGHS 284
Query: 69 GAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEP-------DHQKYTRLATLPTLGDRAI 119
+V S+ D L S D +R+W + + H+ + G +
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344
Query: 120 KLLMPKNHVQIRRHKTCTWVH---HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176
+++ +T + V +++ + D ++ S S D T+++W S
Sbjct: 345 SGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404
Query: 177 LESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRS 214
L ++ + D + +GS+D I++W
Sbjct: 405 LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (100), Expect = 1e-04
Identities = 42/181 (23%), Positives = 61/181 (33%), Gaps = 23/181 (12%)
Query: 8 DHHCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVA 65
L TL GH+S V S+A GK L +GSSD VR WD T + V
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV- 331
Query: 66 VGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATL------------PT 113
++ + + D IR+W + +P L
Sbjct: 332 ---SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG 388
Query: 114 LGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173
D ++L +R H V++L + D L S S D TI++W
Sbjct: 389 STDGTVRLWDLSTGSLLRN-----LDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
Query: 174 F 174
Sbjct: 444 S 444
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 3e-04
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWD 45
L TLKGH V+S+A + G L +GS D VR WD
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 5e-04
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIW 169
T H V+++A + D LL S S D T+++W
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 5e-04
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258
L+ L+ H + ++A S DG L SG+ D +I +W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 6e-04
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 268 VVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301
++ L+GHT + +A D L+ SGS D T+R+W
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 6e-04
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWD 45
L TLKGH V+S+A + GK+L +GS D ++ WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 7e-04
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 272 LRGHTKSILCMA---VVSDLVCSGSADKTIRIW--RGIDRNYT----CLAVLEGHRGPVK 322
L+GHT SIL + S+++ SGS D TIR+W D + +L+GH+ +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
+ N Y++CS D + +W I
Sbjct: 130 IIDWNPMN--------YYIMCSSGFDSFVNIWDI 155
|
Length = 568 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 8e-04
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 268 VVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301
++ L+GHT + +A D + SGS D TI++W
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 9e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIW 169
T H V+++A + D L S S D TIK+W
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.002
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257
L+ L+ H + ++A S DG++L SG+ D ++ VW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.0 bits (81), Expect = 0.003
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 173 DFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVW 211
+ L+++ H + +VA S DG + +GS D IK+W
Sbjct: 1 SGELLKTLK-GHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (80), Expect = 0.004
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 183 AHDDAINAVALSDDGD-VYTGSADKKIKVW 211
H + +VA S DG+ + +GS D ++VW
Sbjct: 9 GHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 362 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.98 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.98 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.95 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.93 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.89 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.87 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.87 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.86 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.86 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.85 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.82 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.81 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.8 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.8 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.79 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.79 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.79 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.79 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.79 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.78 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.77 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.77 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.75 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.75 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.72 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.71 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.71 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.71 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.7 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.69 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.69 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.68 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.67 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.67 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.66 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.66 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.64 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.61 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.61 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.6 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.6 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.58 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.54 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.54 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.54 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.53 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.5 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.5 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.5 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.49 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.46 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.44 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.38 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.38 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.35 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.35 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.34 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.33 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.32 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.3 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.29 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.27 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.26 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.26 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.23 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.17 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.16 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.16 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.13 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.06 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.05 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.03 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.03 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.02 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.0 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.98 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.97 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.97 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.97 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.97 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.97 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.96 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.93 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.93 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.92 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.89 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.86 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.86 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.83 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.83 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.8 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.79 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.78 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.76 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.72 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.72 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.71 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.7 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.7 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.7 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.69 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.69 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.69 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.68 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.67 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.61 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.61 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.53 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.52 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.49 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.45 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.45 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.42 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.41 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.4 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.39 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.38 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.36 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.34 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.33 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.31 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.3 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.3 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.3 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.22 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.17 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.15 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.09 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.08 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.06 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.05 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.03 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.03 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.02 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.96 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.92 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.91 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.91 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.88 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.83 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.73 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.73 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.72 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.68 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.54 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.54 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.53 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.53 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.49 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.46 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.43 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.37 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.31 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.31 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.3 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.23 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.14 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.07 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.04 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.99 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.96 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.91 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.9 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.88 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.87 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.8 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.79 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.79 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.74 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.67 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.66 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.6 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.53 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.4 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.34 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.27 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.26 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.24 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.24 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.14 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.05 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.04 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.03 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.96 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.83 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.73 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.54 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.54 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.48 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.46 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.44 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.43 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.33 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.28 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.21 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.16 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 94.7 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.62 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.54 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 94.42 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.27 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.17 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.69 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 93.61 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 93.31 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 93.31 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.18 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.13 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.09 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.9 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.89 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 92.4 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.36 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 92.23 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.18 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.0 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.77 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.71 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 91.62 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 91.13 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.08 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.06 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 90.72 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 90.57 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 90.08 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 89.96 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.84 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 89.67 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 89.44 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 89.08 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 89.04 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 88.76 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 88.2 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 87.79 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 87.73 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 87.62 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.27 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.71 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 86.26 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 86.26 | |
| PRK10115 | 686 | protease 2; Provisional | 85.85 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 85.64 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 85.5 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 85.16 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 85.11 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 84.02 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 83.34 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 82.91 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 82.74 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 82.28 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 81.42 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 81.09 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 80.4 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 80.38 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-47 Score=317.72 Aligned_cols=291 Identities=27% Similarity=0.453 Sum_probs=245.4
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~ 82 (362)
|-.+|...+.||.++|.++.|+ |..|||||.|.|+|+||+.+.+... ....|...|.++++++|. |+
T Consensus 103 pvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---------t~KgH~~WVlcvawsPDgk~iA 173 (480)
T KOG0271|consen 103 PVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---------TCKGHKNWVLCVAWSPDGKKIA 173 (480)
T ss_pred ccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---------eecCCccEEEEEEECCCcchhh
Confidence 4567889999999999999995 7899999999999999988754221 234577899999999875 99
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe-----cCCCEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT-----KDETLL 157 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l 157 (362)
+|+.||+|++||...++... -.+.+|...|++++|. |..++|
T Consensus 174 SG~~dg~I~lwdpktg~~~g---------------------------------~~l~gH~K~It~Lawep~hl~p~~r~l 220 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQIG---------------------------------RALRGHKKWITALAWEPLHLVPPCRRL 220 (480)
T ss_pred ccccCCeEEEecCCCCCccc---------------------------------ccccCcccceeEEeecccccCCCccce
Confidence 99999999999977655311 1224789999999995 467899
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCC-------------------
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNK------------------- 218 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~------------------- 218 (362)
|++|.||.|+|||+..++++..+. +|+.+|+|++|-.+|.+++|+.|++||+|+...+..
T Consensus 221 as~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd 299 (480)
T KOG0271|consen 221 ASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD 299 (480)
T ss_pred ecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch
Confidence 999999999999999999998775 899999999999999999999999999998654310
Q ss_pred --------------------------------------------------------cceeehhhhccccceeEEEEecCC
Q 044557 219 --------------------------------------------------------KHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 219 --------------------------------------------------------~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
..+.+..+.+|+.-|+.+.||||+
T Consensus 300 y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~ 379 (480)
T KOG0271|consen 300 YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG 379 (480)
T ss_pred hhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc
Confidence 000122356789999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~ 320 (362)
++++++|.|..|++|+.++++ .+..++||.+.|+.++|+.+ +++|||.|.++|+|++.. -++...|-||.+.
T Consensus 380 r~IASaSFDkSVkLW~g~tGk----~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t--kKl~~DLpGh~DE 453 (480)
T KOG0271|consen 380 RYIASASFDKSVKLWDGRTGK----FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT--KKLKQDLPGHADE 453 (480)
T ss_pred cEEEEeecccceeeeeCCCcc----hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee--eeecccCCCCCce
Confidence 999999999999999998754 56789999999999999877 999999999999999643 3556788999999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|.++.++|++. .++||+.|..+|+|.
T Consensus 454 Vf~vDwspDG~---------rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 454 VFAVDWSPDGQ---------RVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEEecCCCc---------eeecCCCceEEEeec
Confidence 99999988765 499999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=311.44 Aligned_cols=276 Identities=25% Similarity=0.419 Sum_probs=235.2
Q ss_pred cCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc----eeEEEecCCcE
Q 044557 17 GHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD----KLFSAHQDHKI 90 (362)
Q Consensus 17 gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~l~s~~~dg~i 90 (362)
|.+.+|..+.| +++.|||||.+|.++||+.... ... ..+..|...+.++.+.+. .+++|+.||++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~-------~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLL-------QTLRGHTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--cee-------EEEeccccceeeEEEccCCCccceeeeccCCce
Confidence 66889998888 4889999999999999997653 222 233456777778877653 59999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
++|++....+ ...+.+|..+|..++|+|+|++|+|++.|.+-++||
T Consensus 244 klw~~~~e~~----------------------------------l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 244 KLWKLSQETP----------------------------------LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD 289 (459)
T ss_pred eeeccCCCcc----------------------------------hhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence 9999875432 112347889999999999999999999999999999
Q ss_pred CCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc
Q 044557 171 TSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 171 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
++++..+. .+.+|...|.+++|.|+|. ++||+.|..-+|||+.++.+ +-.+.+|..+|.+|+|+|+|.+|+|||
T Consensus 290 ~~tk~ElL-~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~----im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 290 LETKSELL-LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC----IMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred cccchhhH-hhcccccccceeEecCCCceeeccCccchhheeecccCcE----EEEecccccceeeEeECCCceEEeecC
Confidence 99987654 3468999999999999998 56899999999999999863 445678999999999999999999999
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEe
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~ 326 (362)
.|+++++||++.... +..+.+|...|..+.|++ .+|+|+|.|++++||. .+.+.++++|.||.+.|.++.+
T Consensus 365 ~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs--~~~~~~~ksLaGHe~kV~s~Di 438 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS--TRTWSPLKSLAGHEGKVISLDI 438 (459)
T ss_pred CCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeec--CCCcccchhhcCCccceEEEEe
Confidence 999999999986442 567899999999999985 3899999999999997 5678999999999999999999
Q ss_pred eecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 327 AIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 327 ~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
++++ .+|+|+|.|.+||+|.
T Consensus 439 s~d~---------~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 439 SPDS---------QAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCC---------ceEEEeccCceeeecc
Confidence 8765 4699999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=260.94 Aligned_cols=290 Identities=24% Similarity=0.366 Sum_probs=221.8
Q ss_pred ceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEE
Q 044557 10 HCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSA 84 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~ 84 (362)
.+..+|+||++.|++++.. .+.+++++.|.++.+|++..... .+....+.+..|...|..+..+. ++.+++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~----~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI----KYGVPVRRLTGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc----ccCceeeeeeccceEecceEEccCCceEEec
Confidence 3567999999999999983 67899999999999999876422 12111233344566677776654 569999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|+++++||+..+++ ...+.+|...|.+++|+||.+.+++||.|+
T Consensus 82 swD~~lrlWDl~~g~~----------------------------------t~~f~GH~~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGES----------------------------------TRRFVGHTKDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred cccceEEEEEecCCcE----------------------------------EEEEEecCCceEEEEecCCCceeecCCCcc
Confidence 9999999999986532 234568999999999999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCC---cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDG---DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
+|++|++-.......-...+.+.|.+++|+|+. .+++++.|++||+||+.+.+ +...+.+|+..++.+++|||
T Consensus 128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~----l~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ----LRTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc----hhhccccccccEEEEEECCC
Confidence 999999876544443333347899999999984 38899999999999998754 44456789999999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEec----C
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLE----G 316 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~----~ 316 (362)
|..+++|+.||.+.+||+.+.+. +.. .+|...|.+++|+|+ +.+....+..||||+... ..++..|. |
T Consensus 204 GslcasGgkdg~~~LwdL~~~k~----lys-l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~--~~~v~~l~~d~~g 276 (315)
T KOG0279|consen 204 GSLCASGGKDGEAMLWDLNEGKN----LYS-LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLES--KAVVEELKLDGIG 276 (315)
T ss_pred CCEEecCCCCceEEEEEccCCce----eEe-ccCCCeEeeEEecCCceeEeeccCCceEEEeccc--hhhhhhccccccc
Confidence 99999999999999999987553 222 357889999999987 556666677799999643 22333332 1
Q ss_pred C---CCcEE--EEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 317 H---RGPVK--CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 317 h---~~~v~--~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
- .+.+. .++|+++ |..|.+|-.|+.||+|++.
T Consensus 277 ~s~~~~~~~clslaws~d---------G~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 277 PSSKAGDPICLSLAWSAD---------GQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccCCcEEEEEEEcCC---------CcEEEeeecCCcEEEEEee
Confidence 1 11333 3444433 4568899999999999985
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=254.99 Aligned_cols=274 Identities=24% Similarity=0.428 Sum_probs=221.0
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce-eEEEecCCcEEEEecCCCCCCccccee
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK-LFSAHQDHKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-l~s~~~dg~i~~w~~~~~~~~~~~~~~ 107 (362)
.-+|||+|.|.|||+|...++.+... +......|..+.+.+++ .+.++....||+||++...+.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT---------iqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~------ 74 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT---------IQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN------ 74 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE---------EecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCC------
Confidence 45899999999999999776543221 11235678888887775 445555778999999876532
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCccc
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDA 187 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~ 187 (362)
...++.+|...|+++.|..+|+++++||+||++||||++...+.+.+. |..+
T Consensus 75 --------------------------Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~sp 126 (311)
T KOG0315|consen 75 --------------------------PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSP 126 (311)
T ss_pred --------------------------ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCC
Confidence 123445788999999999999999999999999999999988777664 6799
Q ss_pred EEEEEEcCCC-cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC--C
Q 044557 188 INAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD--G 264 (362)
Q Consensus 188 v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~--~ 264 (362)
|+++..+|+. .|++|..+|.|++||+........++. .-..+|.++.+.|||++|+.+...|+.++|++-... .
T Consensus 127 Vn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP---e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP---EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred cceEEecCCcceEEeecCCCcEEEEEccCCccccccCC---CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence 9999999876 599999999999999987654444432 344689999999999999999999999999986532 2
Q ss_pred cEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEE
Q 044557 265 NILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLV 342 (362)
Q Consensus 265 ~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l 342 (362)
.+..+..++.|..-++.+.++++ +|+++|.|.+++||+... .++....+.||+..+++++|+.+ +.||
T Consensus 204 ~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~-~~kle~~l~gh~rWvWdc~FS~d---------g~Yl 273 (311)
T KOG0315|consen 204 ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD-FFKLELVLTGHQRWVWDCAFSAD---------GEYL 273 (311)
T ss_pred cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC-ceeeEEEeecCCceEEeeeeccC---------ccEE
Confidence 34456678899999999989876 999999999999998644 35677789999999999999755 3689
Q ss_pred EecCCCCcEEEEeccc
Q 044557 343 CSGSLDCDIKVWQISF 358 (362)
Q Consensus 343 ~s~s~D~~i~~W~~~~ 358 (362)
++||.|+.+|+|+++.
T Consensus 274 vTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSA 289 (311)
T ss_pred EecCCCCceeeccccc
Confidence 9999999999999964
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=256.90 Aligned_cols=291 Identities=21% Similarity=0.357 Sum_probs=230.4
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~ 84 (362)
.+.-++|+||.+.|.++.|. +++|+|+|.||.+.|||.-+.. +. +.+......|...++.+ +.++.|
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--K~-------haipl~s~WVMtCA~sPSg~~VAcG 115 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--KV-------HAIPLPSSWVMTCAYSPSGNFVACG 115 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc--ce-------eEEecCceeEEEEEECCCCCeEEec
Confidence 34458999999999999994 7899999999999999965422 11 11222344555556654 568889
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+-|....+|++...+... . +. ....+.+|.+-+.|+.|-+| ..|+|+|.|.
T Consensus 116 GLdN~Csiy~ls~~d~~g-----~-------------------~~----v~r~l~gHtgylScC~f~dD-~~ilT~SGD~ 166 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEG-----N-------------------VR----VSRELAGHTGYLSCCRFLDD-NHILTGSGDM 166 (343)
T ss_pred CcCceeEEEecccccccc-----c-------------------ce----eeeeecCccceeEEEEEcCC-CceEecCCCc
Confidence 999999999987432110 0 00 01123578999999999875 5688999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
+..+||+++++....+. +|.+.|.++.++| +++ +++|+.|+..++||+..+... ..+.+|...|+++.|.|+|
T Consensus 167 TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~----qtF~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV----QTFEGHESDINSVRFFPSG 241 (343)
T ss_pred eEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEecccccceeeeeccCccee----EeecccccccceEEEccCC
Confidence 99999999999988885 8999999999999 665 899999999999999987544 4567899999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~ 320 (362)
.-+++|+.|+++|+||++.... .. +.....-...|++++|+ +.++..|..|.++.+||... .+.+..|.||.+.
T Consensus 242 ~afatGSDD~tcRlyDlRaD~~-~a-~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk--~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 242 DAFATGSDDATCRLYDLRADQE-LA-VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK--GERVGVLAGHENR 317 (343)
T ss_pred CeeeecCCCceeEEEeecCCcE-Ee-eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc--cceEEEeeccCCe
Confidence 9999999999999999987542 22 22223344568899986 56899999999999999543 4557789999999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|.++..+|++ .-++|||+|.++|||.
T Consensus 318 vScl~~s~DG---------~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 318 VSCLGVSPDG---------MAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEEECCCC---------cEEEecchhHheeecC
Confidence 9999998775 4599999999999994
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=248.70 Aligned_cols=292 Identities=24% Similarity=0.369 Sum_probs=227.8
Q ss_pred eeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEe
Q 044557 11 CLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAH 85 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~ 85 (362)
.+++++||.+.|+.+++. |..|||||.|+.||+|+..... ..... ..+--.|+..|+++++.+ +.|++++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-s~~ck----~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-SWTCK----TVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-cEEEE----EeccccchheeeeeeecCCCcEEEEee
Confidence 567899999999999996 3489999999999999976411 11000 001123677899999864 5699999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.|.++.+|.-..++ +.. ..++.+|...|-|++|+++|++||+|+.|+.
T Consensus 81 FD~t~~Iw~k~~~e-----fec---------------------------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKS 128 (312)
T KOG0645|consen 81 FDATVVIWKKEDGE-----FEC---------------------------VATLEGHENEVKCVAWSASGNYLATCSRDKS 128 (312)
T ss_pred ccceEEEeecCCCc-----eeE---------------------------EeeeeccccceeEEEEcCCCCEEEEeeCCCe
Confidence 99999999754322 111 2234589999999999999999999999999
Q ss_pred EEEEECCC---ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 166 IKIWRTSD---FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 166 i~iwd~~~---~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
|-||.+.. .++...+ ..|++.|..+.|+|... |+++++|++||+|....+ .--.+...+.+|...|.+++|.|.
T Consensus 129 VWiWe~deddEfec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d-ddW~c~~tl~g~~~TVW~~~F~~~ 206 (312)
T KOG0645|consen 129 VWIWEIDEDDEFECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD-DDWECVQTLDGHENTVWSLAFDNI 206 (312)
T ss_pred EEEEEecCCCcEEEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeecCC-CCeeEEEEecCccceEEEEEecCC
Confidence 99999874 3455544 58999999999999765 889999999999987742 233456677889999999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCC----Cceeeee-EecC
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGID----RNYTCLA-VLEG 316 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~----~~~~~~~-~l~~ 316 (362)
|..|++++.|+++++|-+...- -..|...+..+++....|+|++.|+.|+++.... +.+..+. .-..
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~~--------~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~a 278 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTDL--------SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGA 278 (312)
T ss_pred CceEEEecCCcceEeeeeccCc--------chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcc
Confidence 9999999999999999765311 1237788888999877999999999999997432 2222222 3457
Q ss_pred CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 317 HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 317 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|...|+++++.|... ..|+|||+||.|++|.+.
T Consensus 279 He~dVNsV~w~p~~~--------~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 279 HEVDVNSVQWNPKVS--------NRLASGGDDGIVNFWELE 311 (312)
T ss_pred cccccceEEEcCCCC--------CceeecCCCceEEEEEec
Confidence 999999999987322 368999999999999875
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=268.73 Aligned_cols=273 Identities=28% Similarity=0.481 Sum_probs=227.5
Q ss_pred CccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCC
Q 044557 18 HNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINN 97 (362)
Q Consensus 18 H~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~ 97 (362)
-.+.|.|+.++...+++|..|.||++||.++... ..++..|.+.|.|+.+....+++|+.|.+|++||+++
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c---------~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLEC---------LKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHH---------HHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccC
Confidence 4678999999999999999999999999876432 2234567889999998888899999999999999998
Q ss_pred CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceE-
Q 044557 98 QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC- 176 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~- 176 (362)
+++. .++.+|.+.|.-+.|+ ..+++++|.|.++++||+.....
T Consensus 267 ge~l----------------------------------~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 267 GEPL----------------------------------NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred Cchh----------------------------------hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH
Confidence 7742 2345799999999997 45899999999999999987642
Q ss_pred -EEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEE
Q 044557 177 -LESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 177 -~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
+..+..+|..+|+.+.|+.. .+++++.|.+|++|+..+.+ ++.++.+|+.+|.|+.+ .|+++++||.|++||
T Consensus 311 t~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~e----fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIR 383 (499)
T KOG0281|consen 311 TLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCE----FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIR 383 (499)
T ss_pred HHHHHHhhhhhheeeeccccc-eEEEecCCceEEEEecccee----eehhhhcccccceehhc--cCeEEEecCCCceEE
Confidence 22234589999999998854 68999999999999998875 56677899999988876 689999999999999
Q ss_pred EEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCc-------eeeeeEecCCCCcEEEEEeee
Q 044557 256 VWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRN-------YTCLAVLEGHRGPVKCLAAAI 328 (362)
Q Consensus 256 ~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~-------~~~~~~l~~h~~~v~~~~~~~ 328 (362)
+||++.+. .+..++||...|.|+.|..+.+++|+.||+||+|+..... .-|+..+..|++.|..+.|..
T Consensus 384 lwdi~~G~----cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 384 LWDIECGA----CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred EEeccccH----HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 99998754 3456889999999999999999999999999999964321 125667788999999999842
Q ss_pred cCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 329 DNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 329 ~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..|++.++|.+|-|||..
T Consensus 460 -----------fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 460 -----------FQIISSSHDDTILIWDFL 477 (499)
T ss_pred -----------eEEEeccCCCeEEEEEcC
Confidence 358899999999999983
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=264.38 Aligned_cols=246 Identities=26% Similarity=0.448 Sum_probs=202.6
Q ss_pred eEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 63 IVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 63 ~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
.+..|.+.|.++.+.++ .|++|+.|.++|+||+.++.+. .+..+
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~----------------------------------~t~Kg 155 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL----------------------------------FTCKG 155 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc----------------------------------eeecC
Confidence 34557788999988875 5999999999999999765432 23347
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-----CC-cEEEEeCCCeEEEEeCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-----DG-DVYTGSADKKIKVWRRS 214 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-----~~-~~~s~~~dg~i~iw~~~ 214 (362)
|...|.|++|+|||+.||+|+.||.|++||..+++++..-..+|...|++++|.| +. .+++++.||.|+|||+.
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 9999999999999999999999999999999999887666679999999999965 33 48999999999999987
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC-------------------------------
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD------------------------------- 263 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~------------------------------- 263 (362)
.+ .....+.+|..+|+|+.|-.+ .+|++||.|++|++|+...+.
T Consensus 236 ~~----~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t 310 (480)
T KOG0271|consen 236 LG----TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT 310 (480)
T ss_pred Cc----eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence 65 345567899999999999754 589999999999999842100
Q ss_pred -------------------------Cc-------------------EEEEEeecCccceeEEEEEeCC--eEEEeeCCCc
Q 044557 264 -------------------------GN-------------------ILVVGALRGHTKSILCMAVVSD--LVCSGSADKT 297 (362)
Q Consensus 264 -------------------------~~-------------------~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~ 297 (362)
++ .+.+..+.||...|..+.|+|+ +++|+|-|+.
T Consensus 311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence 00 0012245689999999999987 8999999999
Q ss_pred EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
||+|+. +.++.+.+|.||-.+|..++++.| .++|+|||.|.++++|++..
T Consensus 391 VkLW~g--~tGk~lasfRGHv~~VYqvawsaD---------sRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 391 VKLWDG--RTGKFLASFRGHVAAVYQVAWSAD---------SRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred eeeeeC--CCcchhhhhhhccceeEEEEeccC---------ccEEEEcCCCceEEEEEeee
Confidence 999995 456779999999999999999754 36899999999999999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=270.02 Aligned_cols=246 Identities=24% Similarity=0.378 Sum_probs=207.9
Q ss_pred ceeccceeeecccCccceeeeEec----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--
Q 044557 5 SVVDHHCLTTLKGHNSYVSSLALA----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-- 78 (362)
Q Consensus 5 ~~~~~~~~~tl~gH~~~V~~l~~~----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-- 78 (362)
+.++...+.+|+||++.|.++.|. +..+|||+.||++|+|++++.. ....+ ..|...|..+.+.+
T Consensus 203 ~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--~l~~l-------~gH~~RVs~VafHPsG 273 (459)
T KOG0272|consen 203 SVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--PLQDL-------EGHLARVSRVAFHPSG 273 (459)
T ss_pred ecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc--chhhh-------hcchhhheeeeecCCC
Confidence 556778899999999999999995 3479999999999999987632 11121 22456677777754
Q ss_pred ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE
Q 044557 79 DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 79 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
.+|.+++.|.+-++||+.++.... .-.+|...|.+++|+|||.+++
T Consensus 274 ~~L~TasfD~tWRlWD~~tk~ElL----------------------------------~QEGHs~~v~~iaf~~DGSL~~ 319 (459)
T KOG0272|consen 274 KFLGTASFDSTWRLWDLETKSELL----------------------------------LQEGHSKGVFSIAFQPDGSLAA 319 (459)
T ss_pred ceeeecccccchhhcccccchhhH----------------------------------hhcccccccceeEecCCCceee
Confidence 569999999999999997654211 0137999999999999999999
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~ 237 (362)
|||-|..=||||+++++++-.+. +|..+|.+|+|+|+|+ ++||+.|++++|||+.-.. ....+..|.+-|+.|.
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~----~ly~ipAH~nlVS~Vk 394 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS----ELYTIPAHSNLVSQVK 394 (459)
T ss_pred ccCccchhheeecccCcEEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeecccc----cceecccccchhhheE
Confidence 99999999999999999998776 7999999999999997 9999999999999997543 3566788999999999
Q ss_pred Eec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 238 LSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 238 ~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
|+| .|.+|+|+|.|+++++|...+- ..+..+.||.+.|.+++.+++ .++|+|.|++||+|.
T Consensus 395 ~~p~~g~fL~TasyD~t~kiWs~~~~----~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 395 YSPQEGYFLVTASYDNTVKIWSTRTW----SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ecccCCeEEEEcccCcceeeecCCCc----ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999 7889999999999999987643 356788999999999998765 799999999999995
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=253.42 Aligned_cols=285 Identities=29% Similarity=0.445 Sum_probs=226.2
Q ss_pred CccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--Cc---eeEEEecCCcEEE
Q 044557 18 HNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--AD---KLFSAHQDHKIRV 92 (362)
Q Consensus 18 H~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~---~l~s~~~dg~i~~ 92 (362)
|.+.|.+|...+++|+||+.||++|+||..... ...+..|.+++.++.+. .. .+++++.|.++++
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~----------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKS----------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecCCce----------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 899999999999999999999999999975421 12233456677655432 22 3899999999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
|.++.++..... + + ...+|...|.+++..+++..+++||+|.+|+||+.+
T Consensus 174 w~~~~~~~~~~~------~----------------------~--~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 174 WKWNVGENKVKA------L----------------------K--VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVE 223 (423)
T ss_pred EEecCchhhhhH------H----------------------h--HhcccccceeEEEecCCCCeEEeecccceeeecccC
Confidence 998765421100 0 0 012799999999999999999999999999999932
Q ss_pred C-------------------------ceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhh
Q 044557 173 D-------------------------FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE 227 (362)
Q Consensus 173 ~-------------------------~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 227 (362)
. +.++. ...+|+++|.+|.|++.+.+++++.|.+|+.||++++.....+.
T Consensus 224 ~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v-tl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~---- 298 (423)
T KOG0313|consen 224 TDEEDELESSSNRRRKKQKREKEGGTRTPLV-TLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT---- 298 (423)
T ss_pred CCccccccccchhhhhhhhhhhcccccCceE-EecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee----
Confidence 1 01122 23489999999999998889999999999999999987544332
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCC
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~ 304 (362)
.+..+++++++|...+|++|+.|..||+||-+.+.+.. ....+.||.+.|.++.+++. +|++||.|+++|+||..
T Consensus 299 -~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 299 -TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred -cCcceeEeecccccceeeecCCCCceeecCCCCCCCce-eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 35678999999999999999999999999999876655 45678899999999999864 89999999999999975
Q ss_pred CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 305 DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 305 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
.. ..++..+.+|.+.|-++.+.. +.+|+|||.|++|||+.-...+
T Consensus 377 S~-k~plydI~~h~DKvl~vdW~~----------~~~IvSGGaD~~l~i~~~~~~~ 421 (423)
T KOG0313|consen 377 ST-KAPLYDIAGHNDKVLSVDWNE----------GGLIVSGGADNKLRIFKGSPIT 421 (423)
T ss_pred cC-CCcceeeccCCceEEEEeccC----------CceEEeccCcceEEEecccccc
Confidence 43 236788999999999987742 2469999999999999876443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=265.58 Aligned_cols=326 Identities=22% Similarity=0.381 Sum_probs=231.8
Q ss_pred ceeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--e
Q 044557 5 SVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--K 80 (362)
Q Consensus 5 ~~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~ 80 (362)
+++++.+.+++.||.+.|.+|.|+ +++|++||.|.++|+|+++...... ...+..|+..|.+..+..+ .
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-------~~~l~gHkd~VvacfF~~~~~~ 203 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-------TYALNGHKDYVVACFFGANSLD 203 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-------eEeccCCCcceEEEEeccCcce
Confidence 789999999999999999999994 7899999999999999987543211 1223445666666655444 4
Q ss_pred eEEEecCCcEEEEecCCCCCCc--------------------ccc-----eee--eeccCCCchhhhh-ccc--------
Q 044557 81 LFSAHQDHKIRVWKINNQEPDH--------------------QKY-----TRL--ATLPTLGDRAIKL-LMP-------- 124 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~--------------------~~~-----~~~--~~~~~~~~~~~~~-~~~-------- 124 (362)
+++.+.||.+.+|......+.. ++. .+. ..+...+.+.... +.+
T Consensus 204 l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvg 283 (893)
T KOG0291|consen 204 LYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVG 283 (893)
T ss_pred EEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEE
Confidence 9999999999999876221100 000 000 0000000000000 000
Q ss_pred --cccceeeeeeeeEEeee----cCceeEEEEecCCCEEEEEECC-CcEEEEECCCceEEEeeeccCcccEEEEEEcCCC
Q 044557 125 --KNHVQIRRHKTCTWVHH----VDAVSALALTKDETLLYSVSWD-RTIKIWRTSDFKCLESITNAHDDAINAVALSDDG 197 (362)
Q Consensus 125 --~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~ 197 (362)
.+.+.+.........+. ..+|..++|+..|.+||.|+.. |.+-||+..+..-+-+. ++|...+.+++++|||
T Consensus 284 FssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSpDg 362 (893)
T KOG0291|consen 284 FSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSPDG 362 (893)
T ss_pred ecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECCCC
Confidence 00011111222222221 2467788888888888887654 68888887766544443 4899999999999999
Q ss_pred c-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-c
Q 044557 198 D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-H 275 (362)
Q Consensus 198 ~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h 275 (362)
+ +++|+.||+|||||..++- ++.++..|.+.|+.+.|+..|+.++++|.||+||.||+....+-. ++.. .
T Consensus 363 q~iaTG~eDgKVKvWn~~Sgf----C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR----Tft~P~ 434 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGF----CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR----TFTSPE 434 (893)
T ss_pred cEEEeccCCCcEEEEeccCce----EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee----eecCCC
Confidence 8 7899999999999988764 556778899999999999999999999999999999998655432 2222 1
Q ss_pred cceeEEEEEe--CCeEEEeeCCCc-EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 276 TKSILCMAVV--SDLVCSGSADKT-IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 276 ~~~v~~~~~~--~~~~~s~s~D~~-i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
.-+..|++.+ +++++.|+.|.- |.+|+. ++++.+..|.||.++|.+++|+|.++ .|+|||+|.+||
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~--qTGqllDiLsGHEgPVs~l~f~~~~~---------~LaS~SWDkTVR 503 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSV--QTGQLLDILSGHEGPVSGLSFSPDGS---------LLASGSWDKTVR 503 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEe--ecCeeeehhcCCCCcceeeEEccccC---------eEEeccccceEE
Confidence 2234566664 678899998875 999985 46788999999999999999987754 699999999999
Q ss_pred EEecc
Q 044557 353 VWQIS 357 (362)
Q Consensus 353 ~W~~~ 357 (362)
+||+-
T Consensus 504 iW~if 508 (893)
T KOG0291|consen 504 IWDIF 508 (893)
T ss_pred EEEee
Confidence 99984
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=270.52 Aligned_cols=322 Identities=24% Similarity=0.434 Sum_probs=233.8
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc-------Ccee
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL-------ADKL 81 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-------~~~l 81 (362)
|++++.+|.+.|++|++. +.-++++|.|..|.+||+..... ....+. ...+.++... +..+
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~--l~~lp~--------ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKK--LKTLPL--------YESLESVVRLREELGGKGEYI 253 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhh--hheech--------hhheeeEEEechhcCCcceEE
Confidence 899999999999999994 77899999999999999854332 111111 1122222222 2368
Q ss_pred EEEecCCcEEEEecCCCCCC-------cccceeeeeccCC-----------------------------Cchhhh--hcc
Q 044557 82 FSAHQDHKIRVWKINNQEPD-------HQKYTRLATLPTL-----------------------------GDRAIK--LLM 123 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~-------~~~~~~~~~~~~~-----------------------------~~~~~~--~~~ 123 (362)
++++.+|.+++|+....... .+........+.. .+.+.. ++.
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence 99999999999997654321 1111111111000 000000 000
Q ss_pred ----------ccccceeeee--eee-EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce----EEEeeeccCcc
Q 044557 124 ----------PKNHVQIRRH--KTC-TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK----CLESITNAHDD 186 (362)
Q Consensus 124 ----------~~~~~~~~~~--~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~h~~ 186 (362)
+.....+... ..+ -+.+|.+.|.++....+|-+|+|||.|+++++|.+++.. ++. ...+|+.
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a-~~~gH~~ 412 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA-QANGHTN 412 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh-hhccccc
Confidence 0001111110 111 245799999999977788899999999999999885443 222 2358999
Q ss_pred cEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcc-----eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEec
Q 044557 187 AINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKH-----SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 187 ~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
.|.+++++..+. |++++.|+++++|++...+... ....+...|...|++++++|+.+.++|||.|.+.++|++
T Consensus 413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL 492 (775)
T ss_pred ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence 999999987764 8899999999999986522111 112345569999999999999999999999999999999
Q ss_pred cCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCC
Q 044557 260 EEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSD 337 (362)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~ 337 (362)
+. ..+.+.+.||+..|.|+.|++. .++|+|.|++||||.+. .+.|+++|+||...|-.++|..++.
T Consensus 493 e~----~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is--~fSClkT~eGH~~aVlra~F~~~~~------ 560 (775)
T KOG0319|consen 493 EQ----LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS--TFSCLKTFEGHTSAVLRASFIRNGK------ 560 (775)
T ss_pred cC----ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec--cceeeeeecCccceeEeeeeeeCCc------
Confidence 73 3478899999999999999876 89999999999999964 5899999999999999999986543
Q ss_pred CceEEEecCCCCcEEEEeccc
Q 044557 338 TSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 338 ~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.|+|++.||.|+||++..
T Consensus 561 ---qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 561 ---QLISAGADGLIKLWNIKT 578 (775)
T ss_pred ---EEEeccCCCcEEEEeccc
Confidence 588999999999999864
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=247.34 Aligned_cols=288 Identities=23% Similarity=0.394 Sum_probs=227.2
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
++-++.+.++||.+.|.||+++ ..+|+||+.|++|+|||+.+.. +... +..|...+..+.++.. ++|
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~--Lklt-------ltGhi~~vr~vavS~rHpYlF 209 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ--LKLT-------LTGHIETVRGVAVSKRHPYLF 209 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe--EEEe-------ecchhheeeeeeecccCceEE
Confidence 4567889999999999999996 5799999999999999998753 2111 1224456666776653 699
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|+.|+.||++..+.. -.+.+|...|.|++.+|....|++|+.
T Consensus 210 s~gedk~VKCwDLe~nkvI----------------------------------R~YhGHlS~V~~L~lhPTldvl~t~gr 255 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVI----------------------------------RHYHGHLSGVYCLDLHPTLDVLVTGGR 255 (460)
T ss_pred EecCCCeeEEEechhhhhH----------------------------------HHhccccceeEEEeccccceeEEecCC
Confidence 9999999999999754311 012478899999999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
|.++||||+++...+..+. +|..+|.++.+.| ++++++|+.|++|++||+..++.. ..+..|+..|.+++.+|.
T Consensus 256 Dst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~----~tlt~hkksvral~lhP~ 330 (460)
T KOG0285|consen 256 DSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM----ITLTHHKKSVRALCLHPK 330 (460)
T ss_pred cceEEEeeecccceEEEec-CCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee----EeeecccceeeEEecCCc
Confidence 9999999999998888775 8999999999886 557999999999999999887532 234568899999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-CeEEEeeCCCcEEEeeCCCC-ceeeeeEec--C-
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-DLVCSGSADKTIRIWRGIDR-NYTCLAVLE--G- 316 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~s~s~D~~i~~W~~~~~-~~~~~~~l~--~- 316 (362)
...++++|.|+ |+.|++..+. .+..+.+|..-|.+++... +++++|+..|.+-+||...+ +++..++.. |
T Consensus 331 e~~fASas~dn-ik~w~~p~g~----f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS 405 (460)
T KOG0285|consen 331 ENLFASASPDN-IKQWKLPEGE----FLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS 405 (460)
T ss_pred hhhhhccCCcc-ceeccCCccc----hhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCc
Confidence 99999999885 8999987543 3456889999999999864 59999999999999996432 222222211 1
Q ss_pred --CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 317 --HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 317 --h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
-...|.+..|...+ --|++|..|.+|++|.-
T Consensus 406 l~sEagI~as~fDktg---------~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTG---------SRLITGEADKTIKMYKE 438 (460)
T ss_pred cccccceeEEeecccC---------ceEEeccCCcceEEEec
Confidence 23457777775443 34889999999999975
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=271.17 Aligned_cols=204 Identities=22% Similarity=0.466 Sum_probs=181.9
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCC
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~ 215 (362)
++.+|.++|..+.|+|+.++|++||+|+++|+|.+.+..++-... +|..+|+++.|+|-|. |+|++.|++-++|..+.
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 356899999999999999999999999999999999999887775 9999999999999996 89999999999998776
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEee
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGS 293 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s 293 (362)
.. ....+.+|-+.|.|+.|+|+..|+++||.|.+||+||..++. .+..+.||.++|.+++|++. +|+||+
T Consensus 525 ~~----PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~----~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 525 NK----PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN----SVRIFTGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred CC----chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc----EEEEecCCCCceEEEEEcCCCceEeecc
Confidence 43 344567899999999999999999999999999999998754 35567899999999999865 999999
Q ss_pred CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 294 ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 294 ~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
+|+.|++||+. .+..+..+.+|++.|.++.|+.++. .||+||.|++|++||+..+.
T Consensus 597 ed~~I~iWDl~--~~~~v~~l~~Ht~ti~SlsFS~dg~---------vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 597 EDGLIKIWDLA--NGSLVKQLKGHTGTIYSLSFSRDGN---------VLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred cCCcEEEEEcC--CCcchhhhhcccCceeEEEEecCCC---------EEEecCCCCeEEEEEchhhc
Confidence 99999999963 4567889999999999999987754 69999999999999996553
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=265.57 Aligned_cols=289 Identities=26% Similarity=0.402 Sum_probs=236.6
Q ss_pred ccceeeecccCccceeeeEecC---cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCceeE
Q 044557 8 DHHCLTTLKGHNSYVSSLALAG---KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKLF 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~~---~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l~ 82 (362)
..+....+-|.++.|.++.|-| +++|.++.-+.+|++++.+..+ .++..|...|.++.. .+..|+
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------~ii~GH~e~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC----------QIIPGHTEAVLSLDVWSSGDLLA 381 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce----------EEEeCchhheeeeeecccCcEEE
Confidence 4556667889999999999965 7999999999999998765432 255667888888873 344799
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVS 161 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s 161 (362)
+++.|.++++|++++....... .....+|...|.+++++..+ .+|+++|
T Consensus 382 t~sKD~svilWr~~~~~~~~~~------------------------------~a~~~gH~~svgava~~~~~asffvsvS 431 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLC------------------------------VAQANGHTNSVGAVAGSKLGASFFVSVS 431 (775)
T ss_pred EecCCceEEEEEecCCcchhhh------------------------------hhhhcccccccceeeecccCccEEEEec
Confidence 9999999999999543321100 01124689999999997655 6899999
Q ss_pred CCCcEEEEECCCceE----E----EeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccc
Q 044557 162 WDRTIKIWRTSDFKC----L----ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG 232 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~----~----~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~ 232 (362)
.|+++++|++...+. + +.....|...|++|+++|+.. ++||+.|++.+||+++.. .+..++.+|..+
T Consensus 432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~----~l~~vLsGH~RG 507 (775)
T KOG0319|consen 432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL----RLLGVLSGHTRG 507 (775)
T ss_pred CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc----eEEEEeeCCccc
Confidence 999999999876211 1 112357999999999999987 789999999999999843 467788999999
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceee
Q 044557 233 INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTC 310 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~ 310 (362)
|.++.|+|..+.++|+|.|++|++|.+.+.. .++++.||...|....|. +..++|++.||-||+|++. +..|
T Consensus 508 vw~V~Fs~~dq~laT~SgD~TvKIW~is~fS----ClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik--t~eC 581 (775)
T KOG0319|consen 508 VWCVSFSKNDQLLATCSGDKTVKIWSISTFS----CLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK--TNEC 581 (775)
T ss_pred eEEEEeccccceeEeccCCceEEEEEeccce----eeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc--chhh
Confidence 9999999999999999999999999998644 567899999999999985 4599999999999999974 4688
Q ss_pred eeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 311 LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 311 ~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+.+|.+|.+.||+++.++..+ +++||+.||.|.+|.
T Consensus 582 ~~tlD~H~DrvWaL~~~~~~~---------~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 582 EMTLDAHNDRVWALSVSPLLD---------MFVTGGGDGRIIFWK 617 (775)
T ss_pred hhhhhhccceeEEEeecCccc---------eeEecCCCeEEEEee
Confidence 999999999999999876542 589999999999996
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=249.63 Aligned_cols=289 Identities=23% Similarity=0.291 Sum_probs=230.6
Q ss_pred eecccCccceeeeEecC---cEEEEecCCCeEEEeecCCCCcccce--eeeccc--eeE-EeecceeEEEEEc--CceeE
Q 044557 13 TTLKGHNSYVSSLALAG---KFLYTGSSDNEVRSWDCNTFSSELDQ--EFLSNN--NIV-AVGKGAVKSLVVL--ADKLF 82 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~~---~~l~t~s~Dg~i~vWd~~~~~~~~~~--~~~~~~--~~~-~~~~~~v~~i~~~--~~~l~ 82 (362)
+.++ |..+|.+.+|.+ ..+++|+.|-+.|+|++......... .+.+.. .-. ......|++++++ ++.|+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3344 999999999963 37999999999999998631111100 000000 000 0113578899998 45699
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+|+.||.+++|+..... ..++..|.++|.++.|+..|++|++++-
T Consensus 252 tG~~~G~~riw~~~G~l-----------------------------------~~tl~~HkgPI~slKWnk~G~yilS~~v 296 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNL-----------------------------------ISTLGQHKGPIFSLKWNKKGTYILSGGV 296 (524)
T ss_pred EeecCcEEEEEecCchh-----------------------------------hhhhhccCCceEEEEEcCCCCEEEeccC
Confidence 99999999999875421 1123469999999999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
|+++.+||..++...+.+. -|+.+-..|.|-.+..+++++.|+.|+++.+....+. .++.+|.++|.++.|.|.|
T Consensus 297 D~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~----~t~~GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQQFE-FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPV----KTFIGHHGEVNALKWNPTG 371 (524)
T ss_pred CccEEEEeccCceEEEeee-eccCCccceEEecCceEeecCCCceEEEEEecCCCcc----eeeecccCceEEEEECCCC
Confidence 9999999999888877765 4777767889988888999999999999998765443 3456799999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-----------CeEEEeeCCCcEEEeeCCCCceeee
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-----------DLVCSGSADKTIRIWRGIDRNYTCL 311 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----------~~~~s~s~D~~i~~W~~~~~~~~~~ 311 (362)
..|+++|.|+++++|...... ....+.+|.+.|..+.|+| ..+++++.|++|++||+. .+.++
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~----~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~--~gv~i 445 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSN----SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE--SGVPI 445 (524)
T ss_pred ceEEEecCCCeeEeeecCCCc----chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc--CCcee
Confidence 999999999999999975433 3456788999999888864 279999999999999975 46789
Q ss_pred eEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 312 AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 312 ~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++|..|..+|++++|+|++ .+||||+.||.|.+|++.
T Consensus 446 ~~f~kH~~pVysvafS~~g---------~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 446 HTLMKHQEPVYSVAFSPNG---------RYLASGSLDGCVHIWSTK 482 (524)
T ss_pred EeeccCCCceEEEEecCCC---------cEEEecCCCCeeEecccc
Confidence 9999999999999998765 579999999999999884
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=246.30 Aligned_cols=292 Identities=25% Similarity=0.361 Sum_probs=226.4
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCc-ccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSS-ELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
+.+-.++|..|.++|+-+.|+ |+||||+|.|.|..+|++..... ++. ..+..|..+|..+.+++| +|+
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~-------~tlvgh~~~V~yi~wSPDdryLl 285 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLK-------KTLVGHSQPVSYIMWSPDDRYLL 285 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeee-------eeeecccCceEEEEECCCCCeEE
Confidence 344556788999999999994 89999999999999999754321 111 122345678888999875 599
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|..+++||+.+++.... .+ .+|...+.+++|.|||..+++|+.
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~-------y~--------------------------~~~~~S~~sc~W~pDg~~~V~Gs~ 332 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHL-------YP--------------------------SGLGFSVSSCAWCPDGFRFVTGSP 332 (519)
T ss_pred ecCchHheeeccCCcchhhhh-------cc--------------------------cCcCCCcceeEEccCCceeEecCC
Confidence 999999999999987653110 00 123457889999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
|+.+..||+... .+..+.......|.++++.+||+ +++.+.|..|++|+.++..... +..-..+|+++.+|.|
T Consensus 333 dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-----lise~~~its~~iS~d 406 (519)
T KOG0293|consen 333 DRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-----LISEEQPITSFSISKD 406 (519)
T ss_pred CCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----cccccCceeEEEEcCC
Confidence 999999998753 33444433446799999999997 8888899999999987643321 1223568999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeE--EEEEe--C-CeEEEeeCCCcEEEeeCCCCceeeeeEecC
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSIL--CMAVV--S-DLVCSGSADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~--~~~~~--~-~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
|+++++.-.+..+++||+++. .++..+.||...-. .-+|. . .+++|||+|+.|+||+. ..++++.+|.|
T Consensus 407 ~k~~LvnL~~qei~LWDl~e~----~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr--~sgkll~~LsG 480 (519)
T KOG0293|consen 407 GKLALVNLQDQEIHLWDLEEN----KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR--ISGKLLAVLSG 480 (519)
T ss_pred CcEEEEEcccCeeEEeecchh----hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc--cCCceeEeecC
Confidence 999999999999999999842 24556778876532 22343 2 49999999999999984 45678999999
Q ss_pred CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 317 HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 317 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
|+..|+++++.|.. ..++||||+||+||||-...+
T Consensus 481 Hs~~vNcVswNP~~--------p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 481 HSKTVNCVSWNPAD--------PEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CcceeeEEecCCCC--------HHHhhccCCCCeEEEecCCcc
Confidence 99999999998753 257999999999999988755
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=251.24 Aligned_cols=279 Identities=23% Similarity=0.359 Sum_probs=225.0
Q ss_pred ccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEe
Q 044557 19 NSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWK 94 (362)
Q Consensus 19 ~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~ 94 (362)
..+|..|.| .|+.|+||+..|.+-+|+..+... .-++..|..+|+++.++.+ .+++|+.+|.|++|+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF---------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWq 166 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF---------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQ 166 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH---------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecc
Confidence 457888888 478999999999999998643221 1123356788999988654 599999999999998
Q ss_pred cCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCc
Q 044557 95 INNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF 174 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 174 (362)
.+..... . ...+|...|++++|+|++..|++||+||+|+|||....
T Consensus 167 pnmnnVk-------------------~---------------~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 167 PNMNNVK-------------------I---------------IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred cchhhhH-------------------H---------------hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 6532210 0 00146689999999999999999999999999999877
Q ss_pred eEEEeeeccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc
Q 044557 175 KCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS 253 (362)
Q Consensus 175 ~~~~~~~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~ 253 (362)
+....+ .+|.-.|.++.|+|.. .+++++.|..|++||..++.+ +..+..|+..|..+.|+|++.+|+++|.|..
T Consensus 213 kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c----l~tlh~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 213 KEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC----LATLHGHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred chhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcch----hhhhhhccceEEEEEEcCCCCeeEEccCCce
Confidence 765555 5899999999999975 588999999999999998864 4456789999999999999999999999999
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
++++|++.-+ .+..+++|.+.|.++.|.+ +++.+|+.||.|..|.+... ......-.+|...|++++++|
T Consensus 288 ~kv~DiR~mk----El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~~i~~AHd~~iwsl~~hP-- 360 (464)
T KOG0284|consen 288 CKVFDIRTMK----ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLGEIPPAHDGEIWSLAYHP-- 360 (464)
T ss_pred EEEEehhHhH----HHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc-ccccCCCcccccceeeeeccc--
Confidence 9999998422 2446789999999998864 58999999999999986421 122223358999999998864
Q ss_pred CccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 331 DRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 331 ~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
-|++|++||.|.++|+|.-..|
T Consensus 361 -------lGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 361 -------LGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred -------cceeEeecCCCcceeeeccCCC
Confidence 4689999999999999987766
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=250.66 Aligned_cols=232 Identities=31% Similarity=0.511 Sum_probs=199.2
Q ss_pred cceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeE
Q 044557 68 KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSA 147 (362)
Q Consensus 68 ~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 147 (362)
...|.|+....+++++|..|.+|++||.+..... ..+.+|++.|.|
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~----------------------------------~~L~GHtGSVLC 242 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECL----------------------------------KILTGHTGSVLC 242 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHH----------------------------------HhhhcCCCcEEe
Confidence 3467788888888999999999999997643210 112479999999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhh
Q 044557 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE 227 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 227 (362)
+.|. .+.+++||.|.+|+|||++++++++++. .|.++|..+.|+ +|.+++++.|.+|.+||+.+.. ..++-..+.
T Consensus 243 Lqyd--~rviisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps-~it~rrVLv 317 (499)
T KOG0281|consen 243 LQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPT-DITLRRVLV 317 (499)
T ss_pred eecc--ceEEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEe-CCEEEEecCCceeEEEeccCch-HHHHHHHHh
Confidence 9985 5699999999999999999999999886 799999999998 5789999999999999998754 334556788
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCc
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~ 307 (362)
+|...|+.+.|+ .++++++|.|.+|++|+..+.+ .+.++.||...|.|+.+.+.++++||.|.+||+|++. .
T Consensus 318 GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e----fvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~--~ 389 (499)
T KOG0281|consen 318 GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE----FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE--C 389 (499)
T ss_pred hhhhheeeeccc--cceEEEecCCceEEEEecccee----eehhhhcccccceehhccCeEEEecCCCceEEEEecc--c
Confidence 999999999984 5799999999999999987643 4667899999999999999999999999999999965 4
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+.|+..|+||.+-|.++.|.. +-|+||+.||+||+||+.
T Consensus 390 G~cLRvLeGHEeLvRciRFd~-----------krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFDN-----------KRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred cHHHHHHhchHHhhhheeecC-----------ceeeeccccceEEEEecc
Confidence 688999999999999999943 248999999999999985
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=239.05 Aligned_cols=285 Identities=24% Similarity=0.394 Sum_probs=234.8
Q ss_pred ceeeecccCccceeeeEecCc--EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALAGK--FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~~~--~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~ 85 (362)
.+...+.||..+|+.+-+.+. .+++++.|++|++||.++++. +.. +..|...+..+.+. +..+++++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~-------LrGHt~sv~di~~~a~Gk~l~tcS 169 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERS-------LRGHTDSVFDISFDASGKYLATCS 169 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhh-------hhccccceeEEEEecCccEEEecC
Confidence 455567899999999999654 678889999999999987653 211 22345557777664 45699999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.|-.+++||.+... .+ .....+|...|.+++|-|.|.++++++.|.+
T Consensus 170 sDl~~~LWd~~~~~------~c---------------------------~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t 216 (406)
T KOG0295|consen 170 SDLSAKLWDFDTFF------RC---------------------------IKSLIGHEHGVSSVFFLPLGDHILSCSRDNT 216 (406)
T ss_pred CccchhheeHHHHH------HH---------------------------HHHhcCcccceeeEEEEecCCeeeecccccc
Confidence 99999999975421 00 0122468889999999999999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC---
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD--- 241 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--- 241 (362)
|+.|++.++-|+.++. +|.+.|..++.+.||. +++++.|.+|++|-+.+.. ....+..|.-+|-+++|.|.
T Consensus 217 ik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~----~k~~lR~hEh~vEci~wap~~~~ 291 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ----CKAELREHEHPVECIAWAPESSY 291 (406)
T ss_pred eeEEecccceeEEecc-CchHhEEEEEecCCeeEEEecCCCceEEEEEeccch----hhhhhhccccceEEEEecccccC
Confidence 9999999999999986 8999999999999998 6789999999999887764 33456789999999999862
Q ss_pred ------------CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCc
Q 044557 242 ------------GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 242 ------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~ 307 (362)
++++.+++.|++|++||+..+. .+-++.||...|..++|+ +.+|+|+..|+++++||+. +
T Consensus 292 ~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~----cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~--~ 365 (406)
T KOG0295|consen 292 PSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM----CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK--N 365 (406)
T ss_pred cchhhccCCCCCccEEEeecccceEEEEeccCCe----EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec--c
Confidence 2599999999999999998753 455788999999999998 4599999999999999964 5
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.+|.+++..|..-|+++.|..+. .+++|||-|.++++|..
T Consensus 366 ~~cmk~~~ah~hfvt~lDfh~~~---------p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 LQCMKTLEAHEHFVTSLDFHKTA---------PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeeeccCCCcceeEEEecCCCC---------ceEEeccccceeeeeec
Confidence 68899999999999999996442 37999999999999975
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=228.01 Aligned_cols=207 Identities=29% Similarity=0.524 Sum_probs=184.9
Q ss_pred EeeecCceeEEEEecC-CCEEEEEECCCcEEEEECCC---ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEe
Q 044557 138 WVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWRTSD---FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWR 212 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~---~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~ 212 (362)
..+|.+++-.++|+|. |..||+||.|+.||||+... ..+...+..+|...|++++|+|.|+ |++++-|.++.||.
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~ 89 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWK 89 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEee
Confidence 4578999999999998 88999999999999999884 5677777788999999999999998 78999999999998
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEE
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVC 290 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~ 290 (362)
-..+. ......+++|.+.|.+++|+++|.+||+++.|+.|-+|...+ ..++.....+.+|++.|.-+.|.| ++|+
T Consensus 90 k~~~e--fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de-ddEfec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 90 KEDGE--FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE-DDEFECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred cCCCc--eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC-CCcEEEEeeeccccccccEEEEcCCcceeE
Confidence 76543 456778899999999999999999999999999999999884 445667888999999999999987 6999
Q ss_pred EeeCCCcEEEeeCC-CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 291 SGSADKTIRIWRGI-DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 291 s~s~D~~i~~W~~~-~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|+|.|.+||+|+-. ...+.|+++|.+|.+.|++++|.+.+++ |+|++.|++++||.+
T Consensus 167 S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r---------l~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR---------LVSCSDDGTVSIWRL 224 (312)
T ss_pred EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce---------EEEecCCcceEeeee
Confidence 99999999999866 6778999999999999999999876643 899999999999983
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=240.40 Aligned_cols=331 Identities=23% Similarity=0.362 Sum_probs=226.8
Q ss_pred ecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC--
Q 044557 14 TLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD-- 87 (362)
Q Consensus 14 tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d-- 87 (362)
.+.+|...++-..+ +|.|+|+|+..|+|||||....+-.+..++ ..-.++|..|.+..+ +++..+..
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef-------~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEF-------QVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeee-------eecccccccceeCCCCcEEEEEecCcc
Confidence 35577776666666 578999999999999999754322222222 123467777777654 45555533
Q ss_pred --CcEEEEecCCCCCC-cccceeeeeccCCCchhhhhccccc--cceeeeeeee----EEeeecCceeEEEEecCCCEEE
Q 044557 88 --HKIRVWKINNQEPD-HQKYTRLATLPTLGDRAIKLLMPKN--HVQIRRHKTC----TWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 88 --g~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
|.+.+||.-+.-.. ......+....-...+......... .+.+...... +...|..-|.|+.|+|||.+|+
T Consensus 127 rfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 127 RFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA 206 (603)
T ss_pred ceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence 45777775322110 0000111111111111112211111 1122222111 2245888999999999999999
Q ss_pred EEECCCcEEEEECCCceEEEeee--ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee-------------
Q 044557 159 SVSWDRTIKIWRTSDFKCLESIT--NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL------------- 222 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~--~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~------------- 222 (362)
+++.||+|.+||-.+++.+..+. .+|.+.|.+++|+||+. +++++.|.++||||+.+.+...++
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence 99999999999999988777664 47999999999999996 999999999999998765322211
Q ss_pred --------------------------ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC------------
Q 044557 223 --------------------------VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG------------ 264 (362)
Q Consensus 223 --------------------------~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~------------ 264 (362)
...+.+|+..|+++..+||+++|++|+.||.|.-|+..++..
T Consensus 287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 234578999999999999999999999999999998421000
Q ss_pred --------------------------------------------------------------------------------
Q 044557 265 -------------------------------------------------------------------------------- 264 (362)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (362)
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~ 446 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES 446 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence
Q ss_pred -------------------cE----------EEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeE
Q 044557 265 -------------------NI----------LVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 265 -------------------~~----------~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~ 313 (362)
+. .....+..|.+.|++++++++ +|+++...+.|.+|+...+.. ....
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-~~~~ 525 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-KTNR 525 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-ecce
Confidence 00 000012237778899999876 899999999999999755443 2334
Q ss_pred ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCcc
Q 044557 314 LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLV 361 (362)
Q Consensus 314 l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~~ 361 (362)
..=|...|.+++|+|+. .++||||.|-+|.||++..|+.
T Consensus 526 w~FHtakI~~~aWsP~n---------~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 526 WAFHTAKINCVAWSPNN---------KLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred eeeeeeeEEEEEeCCCc---------eEEEeccccceEEEEEccChhh
Confidence 44599999999998875 4699999999999999999975
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=239.21 Aligned_cols=329 Identities=22% Similarity=0.321 Sum_probs=238.7
Q ss_pred ceeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--e
Q 044557 5 SVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--K 80 (362)
Q Consensus 5 ~~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~ 80 (362)
|=|++|.-.+++.|..-|.++.++ |.+++|.|.||+|.+||-.+.+ +..++.. ...|++.+.++.+++| +
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge--~vg~l~~----~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE--KVGELED----SDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc--EEEEecC----CCCccccEEEEEECCCCce
Confidence 447888888999999999999994 8899999999999999977643 3333321 1246889999999976 5
Q ss_pred eEEEecCCcEEEEecCCCCCCcccc-------eeeeeccCCCchhhhhccccccceeeee----eeeEEeeecCceeEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKY-------TRLATLPTLGDRAIKLLMPKNHVQIRRH----KTCTWVHHVDAVSALA 149 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~ 149 (362)
+++++.|.++++||+.......... ..+..+-. .+..+. +...+...+.+. ....+.+|...|++++
T Consensus 250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lIt-VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt 327 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLIT-VSLSGTINYLNPSDPSVLKVISGHNKSITALT 327 (603)
T ss_pred EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEEE-EEcCcEEEEecccCCChhheecccccceeEEE
Confidence 9999999999999997654211000 00000000 000000 000111111111 2234568999999999
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEe-----------ee--------------------c------cC--------
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLES-----------IT--------------------N------AH-------- 184 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-----------~~--------------------~------~h-------- 184 (362)
.+|++++|++|+.||.|.-|+..++..-+. +. . .+
T Consensus 328 v~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q 407 (603)
T KOG0318|consen 328 VSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ 407 (603)
T ss_pred EcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence 999999999999999999999876432110 00 0 00
Q ss_pred -----------------------------------cccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc
Q 044557 185 -----------------------------------DDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER 228 (362)
Q Consensus 185 -----------------------------------~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 228 (362)
.....+++++|++. ++.|+.|++|+||.+..+.... ...+..
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e--e~~~~~ 485 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE--EAKLLE 485 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc--eeeeec
Confidence 00134567777776 6778899999999887654221 223456
Q ss_pred cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCC
Q 044557 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDR 306 (362)
Q Consensus 229 h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~ 306 (362)
|.++|++++||||+.+|+++...+.+.+||+.+.+. ....+..|+.+|.|++|+|+ ++||||-|-+|.+|.+..
T Consensus 486 h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~---~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k- 561 (603)
T KOG0318|consen 486 HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV---KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK- 561 (603)
T ss_pred ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce---ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC-
Confidence 999999999999999999999999999999987543 34556679999999999986 899999999999999754
Q ss_pred ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 307 NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 307 ~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..+.+....+|...|+.++|..+ ..|+|.+.|..||+|++.
T Consensus 562 P~~~i~iknAH~~gVn~v~wlde----------~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 562 PAKHIIIKNAHLGGVNSVAWLDE----------STVVSSGQDANIKVWNVT 602 (603)
T ss_pred hhhheEeccccccCceeEEEecC----------ceEEeccCcceeEEeccc
Confidence 34447778899999999999643 358899999999999985
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=228.65 Aligned_cols=286 Identities=25% Similarity=0.382 Sum_probs=224.1
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~ 86 (362)
.+-.+.||.+.|..+.|. |..|||||.|..|.+|+...... +...+..|.+.|..+.+..+ .+++++.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--------N~~~lkgHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--------NFWVLKGHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--------ceeeeccccceeEeeeeccCCCEEEEecC
Confidence 344578999999999994 78999999999999999643221 22344567888888887655 4999999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCc
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRT 165 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~ 165 (362)
|.+|+.||.++++... ....|.+-|.++..+.-| .++.+++.|++
T Consensus 111 Dk~v~~wD~~tG~~~r----------------------------------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t 156 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIR----------------------------------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGT 156 (338)
T ss_pred CceEEEEecccceeee----------------------------------hhccccceeeecCccccCCeEEEecCCCce
Confidence 9999999998765211 112466666777644434 46778999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCE
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 244 (362)
+++||+++..+++++. ....++++.|.+++. +.+|+-|+.|++||+.... ....+.+|..+|+.+..+|+|.+
T Consensus 157 ~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d----~~~~lsGh~DtIt~lsls~~gs~ 230 (338)
T KOG0265|consen 157 LKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND----GLYTLSGHADTITGLSLSRYGSF 230 (338)
T ss_pred EEEEeecccchhhccc--cceeEEEEEecccccceeeccccCceeeeccccCc----ceEEeecccCceeeEEeccCCCc
Confidence 9999999988887764 345789999998875 9999999999999997654 34567899999999999999999
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeecCccce----eEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS----ILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
+.+-+.|+++++||++..-+....+..+.+|... .+..+|+++ .+-.||.|+.+.+||...+ ..+..|-||.
T Consensus 231 llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r--~~lyklpGh~ 308 (338)
T KOG0265|consen 231 LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR--RILYKLPGHY 308 (338)
T ss_pred cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc--cEEEEcCCcc
Confidence 9999999999999998654444445556665432 355667654 7889999999999995433 4577899999
Q ss_pred CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 319 GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
..|++++|+|.. .+|.|+|.|.+|.+=+
T Consensus 309 gsvn~~~Fhp~e---------~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 309 GSVNEVDFHPTE---------PIILSCSSDKTIYLGE 336 (338)
T ss_pred eeEEEeeecCCC---------cEEEEeccCceeEeec
Confidence 999999998764 4788999999997643
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=250.42 Aligned_cols=292 Identities=19% Similarity=0.301 Sum_probs=229.6
Q ss_pred eeccceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--e
Q 044557 6 VVDHHCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--K 80 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~ 80 (362)
+++.+.+++|.||+..|+++.|. +.+|++|+.|+.|+||++-. ...+...+ ..|..+|..+.++.+ .
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf-------~gH~k~Vrd~~~s~~g~~ 272 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTF-------KGHRKPVRDASFNNCGTS 272 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhh-------hcchhhhhhhhccccCCe
Confidence 45677899999999999999984 67999999999999999754 22233333 336678888888754 5
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYS 159 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s 159 (362)
+++++.|+.|++||++++.... .......+.|+.|+|++ +.|++
T Consensus 273 fLS~sfD~~lKlwDtETG~~~~-----------------------------------~f~~~~~~~cvkf~pd~~n~fl~ 317 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQVLS-----------------------------------RFHLDKVPTCVKFHPDNQNIFLV 317 (503)
T ss_pred eeeeecceeeeeeccccceEEE-----------------------------------EEecCCCceeeecCCCCCcEEEE
Confidence 9999999999999998765210 01122357899999999 88999
Q ss_pred EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 160 VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
|+.|+.|+.||+++++.++++. .|-++|..+.|-++|+ +++.+.|++++||+.......+ .+.....| ...++..
T Consensus 318 G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik-~i~~~~~h--smP~~~~ 393 (503)
T KOG0282|consen 318 GGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK-NIADPEMH--TMPCLTL 393 (503)
T ss_pred ecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch-hhcchhhc--cCcceec
Confidence 9999999999999999888775 6889999999999996 9999999999999987664332 22222234 3557889
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee--EEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEe
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI--LCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l 314 (362)
+|++.+++.-+.|+.|.+|.+...- .......++||...- ..+.|+++ +|++|+.||.+.+||.. +.+.+..+
T Consensus 394 ~P~~~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk--t~kl~~~l 470 (503)
T KOG0282|consen 394 HPNGKWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK--TTKLVSKL 470 (503)
T ss_pred CCCCCeehhhccCceEEEEeccccc-ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeech--hhhhhhcc
Confidence 9999999999999999999875321 122234567776443 45567765 99999999999999953 45668889
Q ss_pred cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 315 EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 315 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
.+|.+.+..+.|+|.... -+|++|+||.|++|+
T Consensus 471 kah~~~ci~v~wHP~e~S--------kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 471 KAHDQPCIGVDWHPVEPS--------KVATCGWDGLIKIWD 503 (503)
T ss_pred ccCCcceEEEEecCCCcc--------eeEecccCceeEecC
Confidence 999999999999987532 489999999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=268.91 Aligned_cols=292 Identities=15% Similarity=0.254 Sum_probs=215.6
Q ss_pred ecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeEEEecCC
Q 044557 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDH 88 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg 88 (362)
.+.+|...|.+++|+ ++++|||+.|++|+|||++......... ........+...+.++.+.+ ..+++++.||
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI--HYPVVELASRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc--ccceEEecccCceeeEEeccCCCCEEEEEeCCC
Confidence 355699999999995 7899999999999999975421100000 00000111234566666643 5699999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEECCCcEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDRTIK 167 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~ 167 (362)
+|++||+..+.. ...+.+|.+.|.+++|+| ++.+|++|+.|+.|+
T Consensus 556 ~v~lWd~~~~~~----------------------------------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~ 601 (793)
T PLN00181 556 VVQVWDVARSQL----------------------------------VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVK 601 (793)
T ss_pred eEEEEECCCCeE----------------------------------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEE
Confidence 999999864321 112246889999999996 788999999999999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEc-CCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALS-DDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~-~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
+||++++.++..+. +...+.++.|+ +++. +++|+.||.|++||+..... ....+.+|...|.++.|. ++.+|
T Consensus 602 iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~-~~~~l 675 (793)
T PLN00181 602 LWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTL 675 (793)
T ss_pred EEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEe-CCCEE
Confidence 99999988877765 33578999995 4565 88999999999999976532 122345799999999997 78899
Q ss_pred EEEcCCCcEEEEeccCCCC--cEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeee----------
Q 044557 246 YSGACDRSIIVWEKEEDDG--NILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCL---------- 311 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~---------- 311 (362)
++++.|++|++||+..... ....+..+.+|...+.++++++ .++++|+.|+.|++|+.........
T Consensus 676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~ 755 (793)
T PLN00181 676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS 755 (793)
T ss_pred EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence 9999999999999874311 1123556889999888888864 4999999999999998532211100
Q ss_pred -eEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 312 -AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 312 -~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.....|...|.+++|++++ .+|++|+.||+|+||++
T Consensus 756 ~~~~~~~~~~V~~v~ws~~~---------~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 756 GLEVDDASQFISSVCWRGQS---------STLVAANSTGNIKILEM 792 (793)
T ss_pred ccccCCCCcEEEEEEEcCCC---------CeEEEecCCCcEEEEec
Confidence 0123466789999997654 46899999999999997
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=254.82 Aligned_cols=289 Identities=28% Similarity=0.501 Sum_probs=226.4
Q ss_pred eeeecccC-ccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 11 CLTTLKGH-NSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 11 ~~~tl~gH-~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
+..++.+| ...|.++.|+ |+++++++.|+.+++|+......... ..+..|...|..+.+.++ .+++++
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~-------~~l~~h~~~v~~~~fs~d~~~l~s~s 222 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLL-------RELSGHTRGVSDVAFSPDGSYLLSGS 222 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhh-------ccccccccceeeeEECCCCcEEEEec
Confidence 36667665 7889998884 88999999999999999844321011 111345667888888765 599999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.|++|++||+.... ....++.+|...|.+++|+|+++++++|+.|++
T Consensus 223 ~D~tiriwd~~~~~---------------------------------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDG---------------------------------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT 269 (456)
T ss_pred CCceEEEeeccCCC---------------------------------eEEEEecCCCCceEEEEecCCCCEEEEecCCCc
Confidence 99999999983221 012234579999999999999999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccc--ceeEEEEecCC
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS--GINALALSCDG 242 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~--~v~~i~~s~~~ 242 (362)
|+|||++++++...+. +|.+.|.+++|++++. +++++.|+.|++||+.++... +...+..+.. +++++.|+|++
T Consensus 270 vriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 270 VRIWDVRTGECVRKLK-GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNG 346 (456)
T ss_pred EEEEeccCCeEEEeee-ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCC
Confidence 9999999999999886 8999999999999997 778899999999999987632 2223334433 59999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE---EEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM---AVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~---~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
.+|++++.|+++++||+.... ......+|...+.|+ ... +.++++|+.|+.|++|+... ...+..+.+|
T Consensus 347 ~~ll~~~~d~~~~~w~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s--~~~~~~l~~h 420 (456)
T KOG0266|consen 347 KYLLSASLDRTLKLWDLRSGK----SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS--GGILQRLEGH 420 (456)
T ss_pred cEEEEecCCCeEEEEEccCCc----ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc--cchhhhhcCC
Confidence 999999999999999998654 344566777754444 222 34899999999999999643 4557789999
Q ss_pred -CCcEEEEEeeecCCccCCCCCceEEEecC--CCCcEEEEecc
Q 044557 318 -RGPVKCLAAAIDNDRCDSSDTSYLVCSGS--LDCDIKVWQIS 357 (362)
Q Consensus 318 -~~~v~~~~~~~~~~~~~~~~~~~~l~s~s--~D~~i~~W~~~ 357 (362)
...|..+++++. ..++++++ .|+.|++|..+
T Consensus 421 ~~~~~~~~~~~~~---------~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 421 SKAAVSDLSSHPT---------ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCceeccccCCC---------cCeeeecCcCCCceEEEecCC
Confidence 888888777544 45788887 79999999875
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=234.12 Aligned_cols=281 Identities=36% Similarity=0.570 Sum_probs=221.9
Q ss_pred eeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC
Q 044557 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD 87 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d 87 (362)
+++|++|.++|.++.++ +++|++++.||.|++|++..... .. ....+...+..+.+.++ .+++++.|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~~ 72 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--LR-------TLKGHTGPVRDVAASADGTYLASGSSD 72 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--EE-------EEecCCcceeEEEECCCCCEEEEEcCC
Confidence 56789999999999995 58999999999999999865321 11 11223445556666654 68999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
+.|++|++...... ..+..|...+.++.++|+++++++++.|+.|+
T Consensus 73 ~~i~i~~~~~~~~~----------------------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 118 (289)
T cd00200 73 KTIRLWDLETGECV----------------------------------RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118 (289)
T ss_pred CeEEEEEcCcccce----------------------------------EEEeccCCcEEEEEEcCCCCEEEEecCCCeEE
Confidence 99999998753210 11224667899999999999999988899999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCcEEE-EeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGDVYT-GSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY 246 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 246 (362)
+||+++++....+. .|...+.+++|+|++.+++ ++.||.|++||+..+.... .+..|...+.++.|+|++..++
T Consensus 119 ~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~ 193 (289)
T cd00200 119 VWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA----TLTGHTGEVNSVAFSPDGEKLL 193 (289)
T ss_pred EEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce----eEecCccccceEEECCCcCEEE
Confidence 99999888777665 6888999999999887555 4459999999997654332 3346778999999999999999
Q ss_pred EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEE
Q 044557 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~ 324 (362)
+++.|+.|++||..... ....+..|...+.++.+.+ .++++++.|+.|++|+... ......+.+|...|.++
T Consensus 194 ~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~--~~~~~~~~~~~~~i~~~ 267 (289)
T cd00200 194 SSSSDGTIKLWDLSTGK----CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT--GECVQTLSGHTNSVTSL 267 (289)
T ss_pred EecCCCcEEEEECCCCc----eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC--ceeEEEccccCCcEEEE
Confidence 99999999999997532 3344557888999999986 3777777899999999643 45677788999999999
Q ss_pred EeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 325 AAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+|++++ .+|++++.|+.|++|+
T Consensus 268 ~~~~~~---------~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 268 AWSPDG---------KRLASGSADGTIRIWD 289 (289)
T ss_pred EECCCC---------CEEEEecCCCeEEecC
Confidence 998653 4689999999999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=238.33 Aligned_cols=246 Identities=26% Similarity=0.478 Sum_probs=205.0
Q ss_pred eeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--Ccee
Q 044557 6 VVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKL 81 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l 81 (362)
+.+.++.++|+||.+.|.+|+|+ |+++||+|.|-.+++||..+... . .+....|+..|+++.+. ++.+
T Consensus 137 ~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~-c-------~ks~~gh~h~vS~V~f~P~gd~i 208 (406)
T KOG0295|consen 137 TETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR-C-------IKSLIGHEHGVSSVFFLPLGDHI 208 (406)
T ss_pred ccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH-H-------HHHhcCcccceeeEEEEecCCee
Confidence 45778899999999999999994 89999999999999999765211 1 11123345667777664 5789
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++++.|.+|+.|++.++. ..+++.+|.+.|..+..+.||.++|+|+
T Consensus 209 lS~srD~tik~We~~tg~----------------------------------cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 209 LSCSRDNTIKAWECDTGY----------------------------------CVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred eecccccceeEEecccce----------------------------------eEEeccCchHhEEEEEecCCeeEEEecC
Confidence 999999999999987653 2344567888999999999999999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC----------C-----c-EEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD----------G-----D-VYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~----------~-----~-~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
.|.+|++|-+.+.+|...+. .|+.+|.+++|.|. + . +.+++.|++||+||+.++. ++-+
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~----cL~t 329 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM----CLFT 329 (406)
T ss_pred CCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe----EEEE
Confidence 99999999999988776664 79999999999652 1 3 6789999999999999885 4456
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
+.+|.+.|..++|+|.|+||+++..|+++++||+...+ .+.++..|...+.+++|..+ +++|||.|.++|+|.
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~----cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ----CMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce----eeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 67899999999999999999999999999999998654 34567789999999999754 899999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=214.22 Aligned_cols=271 Identities=21% Similarity=0.339 Sum_probs=215.3
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s 83 (362)
..+|.+|++--.+.|..|.+. ++.||+++. ..||+||+++........+. .+...|.++.|-. .-+++
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e-------~h~kNVtaVgF~~dgrWMyT 100 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFE-------GHTKNVTAVGFQCDGRWMYT 100 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEe-------ccCCceEEEEEeecCeEEEe
Confidence 567999999888999999984 567777755 88999999876543322332 2456677776654 34999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.||++++||++.... + ....|..+|+++..+|+...|++|..+
T Consensus 101 gseDgt~kIWdlR~~~~--q---------------------------------R~~~~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 101 GSEDGTVKIWDLRSLSC--Q---------------------------------RNYQHNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred cCCCceEEEEeccCccc--c---------------------------------hhccCCCCcceEEecCCcceEEeecCC
Confidence 99999999999975221 0 012466889999999999999999999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc--eeehhhhccccceeEEEEec
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH--SLVDVLERHNSGINALALSC 240 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~h~~~v~~i~~s~ 240 (362)
|.|++||+....+.+.+......+|.++.+.|+|. ++++..-|...+|++....... ..+..++.|..-+..+.+||
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 99999999988777776655667899999999998 5667778999999987643222 23455778999999999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
|+++|+++|.|.++++|+.+.. +.....+++|...+...+|+.+ +|+|||.|+.+|+|+... .+.+....||.
T Consensus 226 d~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~--~k~v~qy~gh~ 300 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA--GKEVRQYQGHH 300 (311)
T ss_pred CCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc--CceeeecCCcc
Confidence 9999999999999999998753 4455678899999999999854 999999999999999644 45578889998
Q ss_pred CcEEEEEe
Q 044557 319 GPVKCLAA 326 (362)
Q Consensus 319 ~~v~~~~~ 326 (362)
.+..|++.
T Consensus 301 K~~vc~~l 308 (311)
T KOG0315|consen 301 KAAVCVAL 308 (311)
T ss_pred cccEEEEe
Confidence 88877765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=243.57 Aligned_cols=278 Identities=24% Similarity=0.408 Sum_probs=224.3
Q ss_pred eeecccCccceeeeEecC--cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC
Q 044557 12 LTTLKGHNSYVSSLALAG--KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD 87 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~~--~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d 87 (362)
-++|..|+..|.+|.+.+ .+++++-..|.|.|||.++... ... +.+...+|++..+.++ -+++|+.|
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm--Vks-------feV~~~PvRa~kfiaRknWiv~GsDD 76 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM--VKS-------FEVSEVPVRAAKFIARKNWIVTGSDD 76 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee--eee-------eeecccchhhheeeeccceEEEecCC
Confidence 456777999999999964 5888899999999999876542 111 1223456666666654 49999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
..|++|+.++.+ +..++..|.+-|+|++.+|...+++|+|.|-+|+
T Consensus 77 ~~IrVfnynt~e----------------------------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 77 MQIRVFNYNTGE----------------------------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIK 122 (794)
T ss_pred ceEEEEecccce----------------------------------eeEEeeccccceeeeeecCCCCeEEecCCccEEE
Confidence 999999987654 2234557999999999999999999999999999
Q ss_pred EEECCCc-eEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec--CC
Q 044557 168 IWRTSDF-KCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC--DG 242 (362)
Q Consensus 168 iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~ 242 (362)
+||.+.. .|.+++. +|+..|.+++|+|.. .+++++-|++||+|.+.+..+.. ++++|..+|+++.+-+ |.
T Consensus 123 lW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf----Tl~gHekGVN~Vdyy~~gdk 197 (794)
T KOG0276|consen 123 LWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF----TLEGHEKGVNCVDYYTGGDK 197 (794)
T ss_pred EeeccCceeeeeEEc-CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce----eeeccccCcceEEeccCCCc
Confidence 9998764 5666664 899999999999865 49999999999999997665443 4578999999999977 44
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~ 320 (362)
.+|++|+.|.+|++||.++..+ +.++.||+..|.++.|.++ .++|||+||++|||. ..+++..++|.---++
T Consensus 198 pylIsgaDD~tiKvWDyQtk~C----V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh--s~Ty~lE~tLn~gleR 271 (794)
T KOG0276|consen 198 PYLISGADDLTIKVWDYQTKSC----VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN--SKTYKLEKTLNYGLER 271 (794)
T ss_pred ceEEecCCCceEEEeecchHHH----HHHhhcccccceEEEecCCCcEEEEecCCccEEEec--CcceehhhhhhcCCce
Confidence 6999999999999999986443 4578999999999999887 799999999999998 4567777788877889
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
||+++-.+.. ..++.|.+.|.|.
T Consensus 272 vW~I~~~k~~---------~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 272 VWCIAAHKGD---------GKIAVGFDEGSVT 294 (794)
T ss_pred EEEEeecCCC---------CeEEEeccCCcEE
Confidence 9999865432 2477787777653
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=219.48 Aligned_cols=244 Identities=25% Similarity=0.423 Sum_probs=193.1
Q ss_pred EeecceeEEEEEc---CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 65 AVGKGAVKSLVVL---ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 65 ~~~~~~v~~i~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
..|.+.|..+.+. ++.+++++.|.++.+|++...+.... . ....+.+|
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------------------~-----~~r~~~GH 62 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------------------V-----PVRRLTGH 62 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------------------c-----eeeeeecc
Confidence 3456677777653 45699999999999999875431100 0 01123468
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
...|..+..++|+++++++|+|+++|+||+.+++..+.+. +|...|.+++|+++.+ +++|+.|++|++|+.-.. ...
T Consensus 63 sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~ 140 (315)
T KOG0279|consen 63 SHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKY 140 (315)
T ss_pred ceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEE
Confidence 8899999999999999999999999999999998877775 8999999999999886 999999999999998643 222
Q ss_pred eeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCC
Q 044557 221 SLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADK 296 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~ 296 (362)
++.. ..+...|+++.|+|+ ..+|+++|.|++|++||+++.+ +...+.||++.+..++++++ +.++|+.||
T Consensus 141 t~~~--~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~----l~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 141 TIHE--DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ----LRTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred EEec--CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc----hhhccccccccEEEEEECCCCCEEecCCCCc
Confidence 2211 223788999999997 7899999999999999998633 44567899999999999876 899999999
Q ss_pred cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 297 TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+.+||+.+ .+++..+ +|...|.+++|+|+. +.|+.+ .+..|+|||+..
T Consensus 215 ~~~LwdL~~--~k~lysl-~a~~~v~sl~fspnr---------ywL~~a-t~~sIkIwdl~~ 263 (315)
T KOG0279|consen 215 EAMLWDLNE--GKNLYSL-EAFDIVNSLCFSPNR---------YWLCAA-TATSIKIWDLES 263 (315)
T ss_pred eEEEEEccC--CceeEec-cCCCeEeeEEecCCc---------eeEeec-cCCceEEEeccc
Confidence 999999754 3446666 588999999998764 455544 556799999863
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=220.63 Aligned_cols=240 Identities=27% Similarity=0.472 Sum_probs=198.5
Q ss_pred ccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCCcEEEEec
Q 044557 19 NSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDHKIRVWKI 95 (362)
Q Consensus 19 ~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg~i~~w~~ 95 (362)
...|-..++ +|+++|.|+-|...-||++.+...+-. ....+.+..|.+.+++..+..| .|++++.|.+.-+||+
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~---~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN---VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDI 173 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc---ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEc
Confidence 456666666 588999999999999999875421111 1123345567888888877765 4999999999999999
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEECCCcEEEEECCCc
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDF 174 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~ 174 (362)
+.+. +...+.+|.+.|.+++++| +++.+++|+.|+.-++||++.+
T Consensus 174 e~g~----------------------------------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 174 ETGQ----------------------------------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred ccce----------------------------------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 7653 1234568999999999999 9999999999999999999999
Q ss_pred eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc
Q 044557 175 KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS 253 (362)
Q Consensus 175 ~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~ 253 (362)
.+.+.+. +|+..|++|+|.|+|. +++|+.|++.|+||+.......... ...-..+|++++||..|++|++|..|.+
T Consensus 220 ~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys--~~~~~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 220 QCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS--HDSIICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred ceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec--cCcccCCceeEEEcccccEEEeeecCCc
Confidence 9999986 8999999999999997 9999999999999998765433221 2234568999999999999999999999
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
+.+||.-..+ .++.+.||.++|.|+..+++ .++|||.|.++|||.
T Consensus 297 c~vWDtlk~e----~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 297 CNVWDTLKGE----RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEeeccccc----eEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999987644 46778899999999999877 799999999999993
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=213.19 Aligned_cols=267 Identities=19% Similarity=0.334 Sum_probs=204.7
Q ss_pred ccceeeecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s 83 (362)
+.+.+++|.+|+++|.++.+ +|+|.+||+.|.+||+|+.... .+..++.+ |-..|...+.. ..++++
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsg-------hG~EVlD~~~s~Dnskf~s 76 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSG-------HGHEVLDAALSSDNSKFAS 76 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecC-------CCceeeecccccccccccc
Confidence 34567889999999999999 5999999999999999986432 23334432 22234444333 346999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.|..+.+||+++++.. -.+.+|.+.|+.+.|+.+...+++||.|
T Consensus 77 ~GgDk~v~vwDV~TGkv~----------------------------------Rr~rgH~aqVNtV~fNeesSVv~SgsfD 122 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVD----------------------------------RRFRGHLAQVNTVRFNEESSVVASGSFD 122 (307)
T ss_pred CCCCceEEEEEcccCeee----------------------------------eecccccceeeEEEecCcceEEEecccc
Confidence 999999999999876421 1234799999999999999999999999
Q ss_pred CcEEEEECCCc--eEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 164 RTIKIWRTSDF--KCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 164 ~~i~iwd~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
.++++||.++. ++++.+. ...+.|.++.++. ..+++|+.||++|.||+..+... .. ....||++++|++|
T Consensus 123 ~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~~-heIvaGS~DGtvRtydiR~G~l~----sD--y~g~pit~vs~s~d 194 (307)
T KOG0316|consen 123 SSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVAE-HEIVAGSVDGTVRTYDIRKGTLS----SD--YFGHPITSVSFSKD 194 (307)
T ss_pred ceeEEEEcccCCCCccchhh-hhcCceeEEEecc-cEEEeeccCCcEEEEEeecceee----hh--hcCCcceeEEecCC
Confidence 99999998764 5666654 4567788888773 45999999999999999877532 21 23568999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeE--EEEE--eCCeEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSIL--CMAV--VSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~--~~~~--~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
++.++.++.|+++|+-|..+++ ++...+||...=. ..++ +...+++||+||.|.+||+.+. ..+..+..|
T Consensus 195 ~nc~La~~l~stlrLlDk~tGk----lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~--~~~sk~~~~ 268 (307)
T KOG0316|consen 195 GNCSLASSLDSTLRLLDKETGK----LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE--TQISKLSVV 268 (307)
T ss_pred CCEEEEeeccceeeecccchhH----HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc--eeeeeeccC
Confidence 9999999999999999987654 4566788876432 2233 3448999999999999997653 446667777
Q ss_pred CCc-EEEEEeeecCC
Q 044557 318 RGP-VKCLAAAIDND 331 (362)
Q Consensus 318 ~~~-v~~~~~~~~~~ 331 (362)
+.. |.+++++|...
T Consensus 269 ~~v~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 269 STVIVTDLSCHPTMD 283 (307)
T ss_pred CceeEEeeecccCcc
Confidence 776 88999887654
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=235.97 Aligned_cols=326 Identities=23% Similarity=0.397 Sum_probs=229.6
Q ss_pred eeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccc------------------ee-----ee--ccceeE
Q 044557 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELD------------------QE-----FL--SNNNIV 64 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~------------------~~-----~~--~~~~~~ 64 (362)
...|.||.++|.+..|. ...++|.+.||.+.+|.......... .+ +. .....+
T Consensus 182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 45688999999998884 55799999999999998762100000 00 00 000000
Q ss_pred EeecceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccce---eeeecc--CCCchhhhhcccc-ccceeeeeeee
Q 044557 65 AVGKGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYT---RLATLP--TLGDRAIKLLMPK-NHVQIRRHKTC 136 (362)
Q Consensus 65 ~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~ 136 (362)
......+.+..+.. +.|+++-..|...+|.+......++... ++.+.. ..++ -+.+..+. ++..++.....
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeecc
Confidence 00112344444433 3478888889999998866543322110 111110 0011 01111111 12234443333
Q ss_pred E----EeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEE
Q 044557 137 T----WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVW 211 (362)
Q Consensus 137 ~----~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw 211 (362)
. -++|...+.+++++|||+++|+|++||.|+|||..++-|+.++. .|+..|+.+.|+..|+ +++.+-||+|+.|
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 3 25789999999999999999999999999999999999999997 7999999999999887 8899999999999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC-cEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--Ce
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR-SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DL 288 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~ 288 (362)
|+....+-.++.. ..+....+++..|.|..+.+|+.|. .|.+|++++++ ++..+.||.++|.+++|++ +.
T Consensus 420 DlkRYrNfRTft~---P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq----llDiLsGHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 420 DLKRYRNFRTFTS---PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ----LLDILSGHEGPVSGLSFSPDGSL 492 (893)
T ss_pred eecccceeeeecC---CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe----eeehhcCCCCcceeeEEccccCe
Confidence 9987654333321 1233457888889999999999988 59999998754 5677899999999888764 59
Q ss_pred EEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 289 VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 289 ~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|+|+|.|++||+|++..+.. .+.++. +...|.+++|.|++++ ||++..||.|-+||..
T Consensus 493 LaS~SWDkTVRiW~if~s~~-~vEtl~-i~sdvl~vsfrPdG~e---------laVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 493 LASGSWDKTVRIWDIFSSSG-TVETLE-IRSDVLAVSFRPDGKE---------LAVATLDGQITFFDIK 550 (893)
T ss_pred EEeccccceEEEEEeeccCc-eeeeEe-eccceeEEEEcCCCCe---------EEEEEecceEEEEEhh
Confidence 99999999999999866433 244554 6778999999988754 8999999999999984
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=246.97 Aligned_cols=287 Identities=26% Similarity=0.416 Sum_probs=235.0
Q ss_pred eecccCccceeeeEecC--cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCC
Q 044557 13 TTLKGHNSYVSSLALAG--KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDH 88 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~~--~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg 88 (362)
..++.-+..|..|+|.+ .+++|+-..|.|++||..-. .+...|. .|.++|+.+.+-+. .+++|+.|-
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~rFd-------eHdGpVRgv~FH~~qplFVSGGDDy 73 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDRFD-------EHDGPVRGVDFHPTQPLFVSGGDDY 73 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhh--hHHhhhh-------ccCCccceeeecCCCCeEEecCCcc
Confidence 34667788999999964 48999999999999995422 1222332 26789999998765 488899999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
.|++|+..... ..+++.+|.+-|+.+.|++.-.+++++|.|++|||
T Consensus 74 kIkVWnYk~rr----------------------------------clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrI 119 (1202)
T KOG0292|consen 74 KIKVWNYKTRR----------------------------------CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRI 119 (1202)
T ss_pred EEEEEecccce----------------------------------ehhhhccccceeEEeeccCCCceEEEccCCCeEEE
Confidence 99999986533 12344689999999999999999999999999999
Q ss_pred EECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc-------------------------ee
Q 044557 169 WRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH-------------------------SL 222 (362)
Q Consensus 169 wd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~-------------------------~~ 222 (362)
|+..+.+|+..+. +|...|.|..|+|... +++++-|.+||+||+..-.+.. -.
T Consensus 120 WNwqsr~~iavlt-GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 120 WNWQSRKCIAVLT-GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred EeccCCceEEEEe-cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 9999999998876 8999999999999665 8899999999999975321100 01
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEE
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRI 300 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~ 300 (362)
...+.+|..+|+-++|+|.-..++||+.|+.|++|.+.. .+.+.+.+..||.+.|.|+-|.+ ++++|.|+|++||+
T Consensus 199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne--tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE--TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV 276 (1202)
T ss_pred eeeecccccccceEEecCCcceEEecCCcceeeEEEecc--ccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence 245688999999999999999999999999999998864 34456678899999999999987 69999999999999
Q ss_pred eeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
||+..+ +.++++..-.+.-|.++.+|..+ |..+++|+-+.++.++
T Consensus 277 wDm~kR--t~v~tfrrendRFW~laahP~lN----------LfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 277 WDMTKR--TSVQTFRRENDRFWILAAHPELN----------LFAAGHDSGMIVFKLE 321 (1202)
T ss_pred Eecccc--cceeeeeccCCeEEEEEecCCcc----------eeeeecCCceEEEEEc
Confidence 997654 45888887888999999987653 5567789998898885
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=238.34 Aligned_cols=324 Identities=26% Similarity=0.399 Sum_probs=231.3
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH 85 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~ 85 (362)
...-+..|+||++.|+...|. .+++++.|.|+.||+||+++..+. .....|++.+..+++.++.+++++
T Consensus 138 ~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf---------~Thvd~r~Eiw~l~~~~~~lvt~~ 208 (888)
T KOG0306|consen 138 GEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCF---------ETHVDHRGEIWALVLDEKLLVTAG 208 (888)
T ss_pred cceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceee---------eEEecccceEEEEEEecceEEEEe
Confidence 344556799999999999884 579999999999999999875431 122345678888888888899999
Q ss_pred cCCcEEEEecCCCCCC-------------------cccceeeeeccC-------CCchhh--------------------
Q 044557 86 QDHKIRVWKINNQEPD-------------------HQKYTRLATLPT-------LGDRAI-------------------- 119 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~-------------------~~~~~~~~~~~~-------~~~~~~-------------------- 119 (362)
.|+.+++|++...... ..+...+...+. ..++.+
T Consensus 209 ~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k 288 (888)
T KOG0306|consen 209 TDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLK 288 (888)
T ss_pred cCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHH
Confidence 9999999998211000 000000000000 000000
Q ss_pred ------------------------hh-------------ccccccce------------e-------------eeeeeeE
Q 044557 120 ------------------------KL-------------LMPKNHVQ------------I-------------RRHKTCT 137 (362)
Q Consensus 120 ------------------------~~-------------~~~~~~~~------------~-------------~~~~~~~ 137 (362)
.+ +.+.+... . ......+
T Consensus 289 ~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~ 368 (888)
T KOG0306|consen 289 RAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIE 368 (888)
T ss_pred HhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceee
Confidence 00 00000000 0 0011234
Q ss_pred EeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEee-------------------------------------
Q 044557 138 WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI------------------------------------- 180 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------------------------------------- 180 (362)
+.+|...|++++++.+...+++|+ .+.|+||+..+.+|++++
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~ 447 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLV 447 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence 567999999999999888787765 589999999888777653
Q ss_pred --eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCC----cceeehhh----hccccceeEEEEecCCCEEEEEc
Q 044557 181 --TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNK----KHSLVDVL----ERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 181 --~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~----~~~~~~~~----~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
..+|++++++++.+|+++ +++|+.|++|++||..-... ..+.+... -.-...|.|+++||||++|+.+-
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 126999999999999997 99999999999998642110 00111100 01246789999999999999999
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
.|++|++|-+.+- ...-.+.||.-+|.||..+++ +++|||.|++||+|-. .-+.|-+.+-+|.+.|+++.|.
T Consensus 528 LdnTVkVyflDtl----KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL--dFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 528 LDNTVKVYFLDTL----KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL--DFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred ccCeEEEEEecce----eeeeeecccccceeEEeccCCcCeEEeccCCCceEEecc--ccchhhhhhhcccCceeEEEEc
Confidence 9999999998753 234468899999999988765 8999999999999964 3467888999999999999998
Q ss_pred ecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|.. +++.|+|.|+.|+-||-
T Consensus 602 P~~---------~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 602 PKT---------HLFFTCGKDGKVKQWDG 621 (888)
T ss_pred ccc---------eeEEEecCcceEEeech
Confidence 742 56889999999999975
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=240.99 Aligned_cols=280 Identities=21% Similarity=0.379 Sum_probs=217.4
Q ss_pred ecccCccceeeeEecCcEEEE-ecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEecCCcE
Q 044557 14 TLKGHNSYVSSLALAGKFLYT-GSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAHQDHKI 90 (362)
Q Consensus 14 tl~gH~~~V~~l~~~~~~l~t-~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~~dg~i 90 (362)
++.||...|++++++.+.++. .+..+.|++|+..+..+... ...+.+.+..+. ...+++|...|.+
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRT-----------i~~~y~l~~~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRT-----------ITCGYILASKFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEE-----------eccccEEEEEecCCCceEEEeccCCce
Confidence 567999999999997543322 33568899999876543221 122233333333 3458899999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
.+||+..... ..+...|.+.+.+++.+||++.+++||.|.+|++||
T Consensus 437 ~vfdlaS~~l----------------------------------~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWd 482 (888)
T KOG0306|consen 437 QVFDLASASL----------------------------------VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWD 482 (888)
T ss_pred EEEEeehhhh----------------------------------hhhhhccccceeeeeecCCCCceEEecCCcEEEEEe
Confidence 9999864321 012235889999999999999999999999999998
Q ss_pred CCCc--------eEE---EeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 171 TSDF--------KCL---ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 171 ~~~~--------~~~---~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
..-- +.+ ++-...-++.|.|+++||||+ ++.+--|.+|+||-+++-+ +.-.+.+|..||.++.+
T Consensus 483 f~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK----FflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 483 FKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK----FFLSLYGHKLPVLSMDI 558 (888)
T ss_pred EEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee----eeeeecccccceeEEec
Confidence 6321 111 000112356799999999998 5566789999999887753 44466899999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecC
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
|||++.++|||.|.+|++|-+.-+++. ..+-+|.+.|.++.|.|+ ++.|+|.|+.||-||. .++.+++.|.|
T Consensus 559 S~DSklivTgSADKnVKiWGLdFGDCH----KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg--~kFe~iq~L~~ 632 (888)
T KOG0306|consen 559 SPDSKLIVTGSADKNVKIWGLDFGDCH----KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG--EKFEEIQKLDG 632 (888)
T ss_pred cCCcCeEEeccCCCceEEeccccchhh----hhhhcccCceeEEEEcccceeEEEecCcceEEeech--hhhhhheeecc
Confidence 999999999999999999998876643 345679999999999876 7899999999999994 46888999999
Q ss_pred CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 317 HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 317 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|...|++++.+|++ .+++|+|+|.+||+|...
T Consensus 633 H~~ev~cLav~~~G---------~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 633 HHSEVWCLAVSPNG---------SFVVSSSHDKSIRLWERT 664 (888)
T ss_pred chheeeeeEEcCCC---------CeEEeccCCceeEeeecc
Confidence 99999999998765 479999999999999863
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=237.32 Aligned_cols=281 Identities=28% Similarity=0.478 Sum_probs=217.2
Q ss_pred eeccceeeecccCccceeeeEe-cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEE-EEEc---Cce
Q 044557 6 VVDHHCLTTLKGHNSYVSSLAL-AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKS-LVVL---ADK 80 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~~V~~l~~-~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-i~~~---~~~ 80 (362)
++..++.++|.||...|..+.+ ++..++++|.||++|+|+-..... ..... ...+.+-+.. +... ..+
T Consensus 1 ~~~Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~-l~~~~------~~~~~g~i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 1 MPQYKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQY-LETHA------FEGPKGFIANSICYAESDKGR 73 (745)
T ss_pred CCcceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCccc-cccee------cccCcceeeccceeccccCcc
Confidence 3677899999999999999998 466799999999999998532111 11000 0112222222 2222 234
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
+++++.|.+|.+|.....++. +++.+|+..|.|++...++. +++|
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~----------------------------------~~LkgH~snVC~ls~~~~~~-~iSg 118 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPL----------------------------------YTLKGHKSNVCSLSIGEDGT-LISG 118 (745)
T ss_pred eEeecccceEEEEecCCCCch----------------------------------hhhhccccceeeeecCCcCc-eEec
Confidence 999999999999987654431 23357999999999888877 8999
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
|+|.++++|... ++...+ .+|+.+|++++..|++.++||+.|++||+|.-. +...++.+|..-|..+++-+
T Consensus 119 SWD~TakvW~~~--~l~~~l-~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~ 189 (745)
T KOG0301|consen 119 SWDSTAKVWRIG--ELVYSL-QGHTASVWAVASLPENTYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLD 189 (745)
T ss_pred ccccceEEecch--hhhccc-CCcchheeeeeecCCCcEEeccCcceeeeccCC------chhhhhccchhheeeeEEec
Confidence 999999999765 334444 589999999999999999999999999999642 35667889999999999986
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
+ ..+++++.||.|++|++.. + .+..+.||+..|.+++.. ...++|+++|+++|+|+.. .|.+.+.-=.
T Consensus 190 ~-~~flScsNDg~Ir~w~~~g-e----~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~----e~~q~I~lPt 259 (745)
T KOG0301|consen 190 D-SHFLSCSNDGSIRLWDLDG-E----VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD----ECVQVITLPT 259 (745)
T ss_pred C-CCeEeecCCceEEEEeccC-c----eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC----ceEEEEecCc
Confidence 5 5678999999999999843 2 345678999999999853 4589999999999999842 6777776334
Q ss_pred CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 319 GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..||++.+-++++ |++|+.||.||||-..
T Consensus 260 tsiWsa~~L~NgD----------Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 260 TSIWSAKVLLNGD----------IVVGGSDGRVRVFTVD 288 (745)
T ss_pred cceEEEEEeeCCC----------EEEeccCceEEEEEec
Confidence 4899998887765 8899999999999775
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=246.36 Aligned_cols=280 Identities=30% Similarity=0.483 Sum_probs=230.0
Q ss_pred eeeccc-CccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEecCC
Q 044557 12 LTTLKG-HNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAHQDH 88 (362)
Q Consensus 12 ~~tl~g-H~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~~dg 88 (362)
...+.+ |...+.+..+...++++++.|++|++||....... ... +..|.+.+.++.+. ++.|++|+.|.
T Consensus 200 ~~~~~~~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i-~~~-------l~GH~g~V~~l~~~~~~~~lvsgS~D~ 271 (537)
T KOG0274|consen 200 YKVLLGTDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLI-LTR-------LVGHFGGVWGLAFPSGGDKLVSGSTDK 271 (537)
T ss_pred ceeecccCcchhhhheeecCeEEecCCCceeEEeecccceEE-Eee-------ccCCCCCceeEEEecCCCEEEEEecCC
Confidence 344555 56778888888999999999999999997653211 111 23467889999887 78899999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
++++||...+.. ...+.+|.+.+.++... ..++++||.|.+|++
T Consensus 272 t~rvWd~~sg~C----------------------------------~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 272 TERVWDCSTGEC----------------------------------THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKV 315 (537)
T ss_pred cEEeEecCCCcE----------------------------------EEEecCCCceEEEEEcc--CceEeeccCCceEEE
Confidence 999999876542 23445788899998764 457888999999999
Q ss_pred EECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE
Q 044557 169 WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 169 wd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
|+++++.++..+. +|..+|.++... ++.+++|+.|++|++||..++ ++...+.+|...|.++.+.+. ..+++|
T Consensus 316 W~v~n~~~l~l~~-~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~----~cl~sl~gH~~~V~sl~~~~~-~~~~Sg 388 (537)
T KOG0274|consen 316 WDVTNGACLNLLR-GHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTG----KCLKSLSGHTGRVYSLIVDSE-NRLLSG 388 (537)
T ss_pred EeccCcceEEEec-cccccEEEEEec-CCEEEEEecCceEEEEEhhhc----eeeeeecCCcceEEEEEecCc-ceEEee
Confidence 9999999998775 599999999998 667999999999999999865 456677889999999987654 899999
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecC-CCCcEEEEEee
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEG-HRGPVKCLAAA 327 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~-h~~~v~~~~~~ 327 (362)
+.|++|++||++... ..+.++.+|...+.++.+...++++++.|++|++||.. .+.++.++.+ |...|..+++.
T Consensus 389 s~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~--~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAE--EGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred eeccceEeecCCchh---hhhhhhcCCcccccccccccceeEeccccccEEEeecc--cCceeeeeccCCcccEEEeecC
Confidence 999999999998752 23557889999998898888999999999999999964 4678899998 78999988774
Q ss_pred ecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...+++++.||++++||+..
T Consensus 464 -----------~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 464 -----------KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred -----------cceEEEEecCCeeEEEeccc
Confidence 13478889999999999953
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=244.94 Aligned_cols=204 Identities=28% Similarity=0.470 Sum_probs=174.1
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~ 86 (362)
..++|-||.++|...+|+ .++|++||.|+++|+|.+.+... ....+.|..+|..+.+.+. +++|++.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~---------~V~y~GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC---------LVIYKGHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeeccccee---------EEEecCCCcceeeEEecCCceEEEecCC
Confidence 455699999999999995 67999999999999999876431 1122346678888888876 4889999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
|++.++|..+...+. -.+.+|...|.|+.|+|+..|+++||.|++|
T Consensus 514 D~tArLWs~d~~~Pl----------------------------------RifaghlsDV~cv~FHPNs~Y~aTGSsD~tV 559 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPL----------------------------------RIFAGHLSDVDCVSFHPNSNYVATGSSDRTV 559 (707)
T ss_pred CceeeeeecccCCch----------------------------------hhhcccccccceEEECCcccccccCCCCceE
Confidence 999999987643221 0124789999999999999999999999999
Q ss_pred EEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 167 KIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
|+||+.++..++.+. +|.++|.+++|+|.|+ |++|+.||.|++||+.++. +...+.+|.+.|.++.|+.||..|
T Consensus 560 RlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~----~v~~l~~Ht~ti~SlsFS~dg~vL 634 (707)
T KOG0263|consen 560 RLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS----LVKQLKGHTGTIYSLSFSRDGNVL 634 (707)
T ss_pred EEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc----chhhhhcccCceeEEEEecCCCEE
Confidence 999999999999885 8999999999999998 8899999999999998874 455677899999999999999999
Q ss_pred EEEcCCCcEEEEeccCC
Q 044557 246 YSGACDRSIIVWEKEED 262 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~ 262 (362)
++||.|++|++||+...
T Consensus 635 asgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 635 ASGGADNSVRLWDLTKV 651 (707)
T ss_pred EecCCCCeEEEEEchhh
Confidence 99999999999998653
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=245.84 Aligned_cols=243 Identities=21% Similarity=0.365 Sum_probs=202.4
Q ss_pred eeEEEEEcCce--eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeE
Q 044557 70 AVKSLVVLADK--LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSA 147 (362)
Q Consensus 70 ~v~~i~~~~~~--l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 147 (362)
.+..+.+-+.+ ++++-..|.|++||.+.+... ..+..|.++|+.
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli----------------------------------~rFdeHdGpVRg 56 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI----------------------------------DRFDEHDGPVRG 56 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHH----------------------------------hhhhccCCccce
Confidence 34455555543 778888999999998643211 112469999999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
+.|+|...+|++|+.|-.|++|+..+.+|+.++. +|.+.|+.+.|++.-. +++++.|.+|+||+..+.+ ++..+
T Consensus 57 v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~----~iavl 131 (1202)
T KOG0292|consen 57 VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK----CIAVL 131 (1202)
T ss_pred eeecCCCCeEEecCCccEEEEEecccceehhhhc-cccceeEEeeccCCCceEEEccCCCeEEEEeccCCc----eEEEE
Confidence 9999999999999999999999999999999886 8999999999998876 8999999999999998764 55677
Q ss_pred hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCC-------------------------CCcEEEEEeecCccceeEE
Q 044557 227 ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEED-------------------------DGNILVVGALRGHTKSILC 281 (362)
Q Consensus 227 ~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~-------------------------~~~~~~~~~~~~h~~~v~~ 281 (362)
.+|+..|.|..|+|....++|+|.|.+||+||+..- .....+-..+.||...|..
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw 211 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW 211 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence 899999999999999999999999999999996320 0112234457899999999
Q ss_pred EEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 282 MAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 282 ~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.+|.+ .+++||+.|+.||+|+....+.=.+.+..||.+.|.++.|+|.. .+|.|.|.|++|||||+...
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q---------~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ---------DLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc---------ceeEecCCCccEEEEecccc
Confidence 99998 58999999999999997665544567889999999999998753 46899999999999999765
Q ss_pred c
Q 044557 360 L 360 (362)
Q Consensus 360 ~ 360 (362)
+
T Consensus 283 t 283 (1202)
T KOG0292|consen 283 T 283 (1202)
T ss_pred c
Confidence 4
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=234.87 Aligned_cols=237 Identities=23% Similarity=0.381 Sum_probs=197.2
Q ss_pred cceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
...|.++.+-+. -++++-.+|.|.+|+.+++.... ++.-..-+|
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk----------------------------------sfeV~~~Pv 58 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK----------------------------------SFEVSEVPV 58 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeee----------------------------------eeeecccch
Confidence 445666666543 37777789999999987654211 111123467
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
++..|-+--+++++|+.|..||||+.++++.+..+. +|.+.|++++.+|.-. ++|++.|-+||+||.+.. -.+..
T Consensus 59 Ra~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~---wa~~q 134 (794)
T KOG0276|consen 59 RAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---WACEQ 134 (794)
T ss_pred hhheeeeccceEEEecCCceEEEEecccceeeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCc---eeeee
Confidence 888888888999999999999999999999999886 8999999999999875 889999999999998653 35666
Q ss_pred hhhccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-C---CeEEEeeCCCcEE
Q 044557 225 VLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-S---DLVCSGSADKTIR 299 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~---~~~~s~s~D~~i~ 299 (362)
++.+|...|.+++|.| |.+.+++++.|++|++|.+.++.++. +++||...|.|+.+- + .+++||+.|.+||
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf----Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiK 210 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF----TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIK 210 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce----eeeccccCcceEEeccCCCcceEEecCCCceEE
Confidence 7889999999999999 77899999999999999998766543 467999999999984 2 2999999999999
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+||. ++-.|+++|+||...|..+.|+|+- .+|+|||.||++|||+-.
T Consensus 211 vWDy--Qtk~CV~TLeGHt~Nvs~v~fhp~l---------piiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 211 VWDY--QTKSCVQTLEGHTNNVSFVFFHPEL---------PIIISGSEDGTVRIWNSK 257 (794)
T ss_pred Eeec--chHHHHHHhhcccccceEEEecCCC---------cEEEEecCCccEEEecCc
Confidence 9995 3457899999999999999998764 479999999999999863
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-30 Score=220.00 Aligned_cols=273 Identities=21% Similarity=0.323 Sum_probs=216.0
Q ss_pred ccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEEEe
Q 044557 19 NSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVWK 94 (362)
Q Consensus 19 ~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~ 94 (362)
+..|++|+|+ |..||||+.||.+|+|+..... ...+..|+++|.++.+.. ++|++++.|+++-+||
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd 304 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWD 304 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchh----------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEe
Confidence 4689999995 8999999999999999965421 122345789999999875 4599999999999999
Q ss_pred cCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCc
Q 044557 95 INNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF 174 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 174 (362)
...+... ..+..|..+-..+.|-.+ .-|++++.|+.|+|+.+...
T Consensus 305 ~~~g~~~----------------------------------q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 305 AHTGTVK----------------------------------QQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED 349 (524)
T ss_pred ccCceEE----------------------------------EeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCC
Confidence 8654311 111234444345555433 46889999999999999998
Q ss_pred eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC---------CE
Q 044557 175 KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG---------SV 244 (362)
Q Consensus 175 ~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---------~~ 244 (362)
.+..++. +|..+|.++.|+|.|. |++++.|++++||...... ....+..|...|..+.|+|+| ..
T Consensus 350 ~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~----~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~ 424 (524)
T KOG0273|consen 350 RPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN----SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLM 424 (524)
T ss_pred Ccceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCCc----chhhhhhhccceeeEeecCCCCccCCCcCCce
Confidence 8888887 5999999999999998 7899999999999876543 355678899999999999964 58
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEE
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVK 322 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~ 322 (362)
|++++.|++|++||+..+. .+..+..|+.+|.+++|+++ ++++|+.||.|.+|+. +.++.++.+.+ .+.|.
T Consensus 425 l~sas~dstV~lwdv~~gv----~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~--~~~~l~~s~~~-~~~If 497 (524)
T KOG0273|consen 425 LASASFDSTVKLWDVESGV----PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST--KTGKLVKSYQG-TGGIF 497 (524)
T ss_pred EEEeecCCeEEEEEccCCc----eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc--cchheeEeecC-CCeEE
Confidence 9999999999999998754 45668889999999999854 9999999999999985 45666777765 44588
Q ss_pred EEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+.|+.++ .+|..+-.|+.+.+-|+.
T Consensus 498 el~Wn~~G---------~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 498 ELCWNAAG---------DKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEcCCC---------CEEEEEecCCCceEEEec
Confidence 88886543 345556678999998874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-30 Score=213.14 Aligned_cols=289 Identities=19% Similarity=0.277 Sum_probs=222.6
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
.--+.+|..|+++|.+++.. .++++|||.|-...+|++.+.. ...+ +..|+..|.++.++.+ .|++|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--~~~e-------ltgHKDSVt~~~FshdgtlLATG 124 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--FAGE-------LTGHKDSVTCCSFSHDGTLLATG 124 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--ceeE-------ecCCCCceEEEEEccCceEEEec
Confidence 34567899999999999996 5689999999999999987654 2222 2346778999988765 59999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
..+|.|++|+..++.... .+..--+.+.-+.|+|-+.+|+.|+.||
T Consensus 125 dmsG~v~v~~~stg~~~~----------------------------------~~~~e~~dieWl~WHp~a~illAG~~DG 170 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQW----------------------------------KLDQEVEDIEWLKWHPRAHILLAGSTDG 170 (399)
T ss_pred CCCccEEEEEcccCceEE----------------------------------EeecccCceEEEEecccccEEEeecCCC
Confidence 999999999986543110 0111234567889999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehh------------------
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDV------------------ 225 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~------------------ 225 (362)
.+-+|.+.+....+.+ .+|..++++=.|.|+|+ ++++..||+|++|++.++.+...+...
T Consensus 171 svWmw~ip~~~~~kv~-~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 171 SVWMWQIPSQALCKVM-SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred cEEEEECCCcceeeEe-cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 9999999986555545 48999999999999997 889999999999999887644333100
Q ss_pred ---------------------hh--------ccccceeEEE---EecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec
Q 044557 226 ---------------------LE--------RHNSGINALA---LSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR 273 (362)
Q Consensus 226 ---------------------~~--------~h~~~v~~i~---~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 273 (362)
.. .+...+.++. ++..=.+.|+|+.||+|.+||+...... ..-
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R-----~~c 324 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR-----HIC 324 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh-----eec
Confidence 00 1111222232 3333457789999999999998764322 223
Q ss_pred CccceeEEEEEeC-CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 274 GHTKSILCMAVVS-DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 274 ~h~~~v~~~~~~~-~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
.|...|..+.|.+ .++++++.||.|+.||. +.+.+..++.||...|.+++.+|+. ++++|+|.|++.+
T Consensus 325 ~he~~V~~l~w~~t~~l~t~c~~g~v~~wDa--RtG~l~~~y~GH~~~Il~f~ls~~~---------~~vvT~s~D~~a~ 393 (399)
T KOG0296|consen 325 EHEDGVTKLKWLNTDYLLTACANGKVRQWDA--RTGQLKFTYTGHQMGILDFALSPQK---------RLVVTVSDDNTAL 393 (399)
T ss_pred cCCCceEEEEEcCcchheeeccCceEEeeec--cccceEEEEecCchheeEEEEcCCC---------cEEEEecCCCeEE
Confidence 4788899999977 69999999999999994 6688899999999999999998764 4699999999999
Q ss_pred EEecc
Q 044557 353 VWQIS 357 (362)
Q Consensus 353 ~W~~~ 357 (362)
|++++
T Consensus 394 VF~v~ 398 (399)
T KOG0296|consen 394 VFEVP 398 (399)
T ss_pred EEecC
Confidence 99875
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9e-31 Score=218.17 Aligned_cols=241 Identities=22% Similarity=0.404 Sum_probs=203.4
Q ss_pred ceeEEeecceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEE
Q 044557 61 NNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTW 138 (362)
Q Consensus 61 ~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (362)
..++..|.+.|.++++.+ ..+++++.|++|++||+.++.. ..++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L----------------------------------kltl 189 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL----------------------------------KLTL 189 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE----------------------------------EEee
Confidence 456677889999998865 3599999999999999986541 1123
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
-+|...|+.+++++--.||+++++|+.|+.||++..+.++.+ .+|-..|.+++..|.-. +++|+.|.++|+||+.+..
T Consensus 190 tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~ 268 (460)
T KOG0285|consen 190 TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA 268 (460)
T ss_pred cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccc
Confidence 468889999999999999999999999999999999988876 48999999999999876 8999999999999998754
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCC
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSAD 295 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D 295 (362)
.+.++.+|..+|..+.+.|.+..+++||.|++|++||+..++. ..++..|...|.+++..|. .++|+|.|
T Consensus 269 ----~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt----~~tlt~hkksvral~lhP~e~~fASas~d 340 (460)
T KOG0285|consen 269 ----SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT----MITLTHHKKSVRALCLHPKENLFASASPD 340 (460)
T ss_pred ----eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce----eEeeecccceeeEEecCCchhhhhccCCc
Confidence 3456789999999999999999999999999999999987543 3456779999999998875 78899988
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.|+-|++. .+..++.+.+|...|++++...++ ++++|++.|.+-+||..
T Consensus 341 -nik~w~~p--~g~f~~nlsgh~~iintl~~nsD~----------v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 341 -NIKQWKLP--EGEFLQNLSGHNAIINTLSVNSDG----------VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred -cceeccCC--ccchhhccccccceeeeeeeccCc----------eEEEcCCceEEEEEecC
Confidence 58999964 345577899999999999875432 57899999999999973
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=216.62 Aligned_cols=274 Identities=23% Similarity=0.425 Sum_probs=203.5
Q ss_pred cceeeecccCccceeeeEec-----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--cee
Q 044557 9 HHCLTTLKGHNSYVSSLALA-----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKL 81 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~-----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l 81 (362)
.++..++.||.++|.++++. ...|+++|.|.++++|..+.+....... .+-..|+..|.++...+ .++
T Consensus 134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~-----~~~~GHk~~V~sVsv~~sgtr~ 208 (423)
T KOG0313|consen 134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL-----KVCRGHKRSVDSVSVDSSGTRF 208 (423)
T ss_pred CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH-----hHhcccccceeEEEecCCCCeE
Confidence 56888999999999999882 3469999999999999987643221111 11235788898988754 469
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++++.|.+|++|+........ ......-+ +..... ......+...-++.+|.+.|.++.|++ ...++++|
T Consensus 209 ~SgS~D~~lkiWs~~~~~~~~--~E~~s~~r----rk~~~~---~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S 278 (423)
T KOG0313|consen 209 CSGSWDTMLKIWSVETDEEDE--LESSSNRR----RKKQKR---EKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS 278 (423)
T ss_pred EeecccceeeecccCCCcccc--ccccchhh----hhhhhh---hhcccccCceEEecccccceeeEEEcC-CCceEeec
Confidence 999999999999943222110 00000000 000000 000112233456679999999999988 67899999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
+|.+|+.||+.++.+...+. -....+++.++|... +++|+.|..|++||..++... -....+.+|++.|.++.|+|
T Consensus 279 wDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs-~v~~s~~gH~nwVssvkwsp 355 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS-VVSQSLIGHKNWVSSVKWSP 355 (423)
T ss_pred ccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCceeecCCCCCCCc-eeEEeeecchhhhhheecCC
Confidence 99999999999998877664 345789999999876 788999999999999877432 23445678999999999999
Q ss_pred CC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeC
Q 044557 241 DG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRG 303 (362)
Q Consensus 241 ~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~ 303 (362)
.. .+|++|+.|+++++||+++.... +..+.+|.+.|+++.|... .++||+.|++|++++.
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k~p---lydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTKAP---LYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCCCc---ceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 65 56889999999999999986644 3457789999999999755 9999999999999974
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=207.44 Aligned_cols=246 Identities=22% Similarity=0.352 Sum_probs=190.4
Q ss_pred ceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCc
Q 044557 10 HCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHK 89 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~ 89 (362)
..+-.+..|.++|++|++++.|+||||.|-+|+|||+.... +
T Consensus 34 ~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~-----q--------------------------------- 75 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRK-----Q--------------------------------- 75 (362)
T ss_pred eccccccccccceeEEEecceeEeccCCCCcEEEEeccchh-----h---------------------------------
Confidence 34556778999999999999999999999999999864311 0
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC--EEEEEECCCcEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET--LLYSVSWDRTIK 167 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~ 167 (362)
...+..|.+.|+++.|.++.. .|++|+.||.|.
T Consensus 76 ---------------------------------------------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 76 ---------------------------------------------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred ---------------------------------------------hcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 001135778899999988765 899999999999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCcE-EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGDV-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY 246 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 246 (362)
+|+...++++..+. +|...|+.++++|.++| ++.+.|+.+++|++-.+.....+ .+ ...-+.+.|+|.|.+++
T Consensus 111 iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~--~L---~~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 111 IWRVGSWELLKSLK-AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL--NL---KNKATLVSWSPQGDHFV 184 (362)
T ss_pred EEEcCCeEEeeeec-ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee--cc---CCcceeeEEcCCCCEEE
Confidence 99999999988875 89999999999999996 48899999999999887643211 11 22234499999999988
Q ss_pred EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEE
Q 044557 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLA 325 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~ 325 (362)
.++.++ |-+|.+++..- ...+. -..++.|+.|. ++.+++|..|+.|++||... ..+...+.+|..+|.+++
T Consensus 185 v~~~~~-i~i~q~d~A~v----~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds--~~~~~~~~AH~~RVK~i~ 256 (362)
T KOG0294|consen 185 VSGRNK-IDIYQLDNASV----FREIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDS--DTPLTEFLAHENRVKDIA 256 (362)
T ss_pred EEeccE-EEEEecccHhH----hhhhh-ccccceeeeecCCceEEEecCCceEEEeccCC--CccceeeecchhheeeeE
Confidence 888764 77898765321 11111 12557788774 56999999999999999543 566788999999999998
Q ss_pred eeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 326 AAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+..+ +.+.+|+|+|.||.|++||++--
T Consensus 257 ~~~~-------~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 257 SYTN-------PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEec-------CCceEEEEeccCceEEEEEcccc
Confidence 6543 44589999999999999999654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=232.11 Aligned_cols=306 Identities=21% Similarity=0.317 Sum_probs=197.9
Q ss_pred ceeeecc-cCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEec
Q 044557 10 HCLTTLK-GHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQ 86 (362)
Q Consensus 10 ~~~~tl~-gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~ 86 (362)
...+.+. +|.+.|+++.| +|+||||||.|+.||||.+....... ...+.-.++.+ ....
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~------------~~~~~~~~~~~------~~~~ 318 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR------------VAEGDSSCMYF------EYNA 318 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc------------ccccccchhhh------hhhh
Confidence 3445566 89999999999 49999999999999999864321100 00111111100 0000
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
.+.+.--.... +................ ....+...+.+.....+.+.+|.+.|..++|+.+ ++|+++|.|++|
T Consensus 319 ~s~~~p~~s~~-~~~~~~~s~~~~~~~s~----~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTV 392 (712)
T KOG0283|consen 319 NSQIEPSTSSE-EKISSRTSSSRKGSQSP----CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTV 392 (712)
T ss_pred ccccCcccccc-ccccccccccccccCCc----cccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccE
Confidence 01000000000 00000000000000000 0111111222334455677899999999999986 578899999999
Q ss_pred EEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCE
Q 044557 167 KIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 244 (362)
|+|++...+|+..+. |.+.|+||+|+|-. .|++|+-||+||||++...+ ....... ..-|++++|.|||++
T Consensus 393 RLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~W~Dl-~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 393 RLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK----VVDWNDL-RDLITAVCYSPDGKG 465 (712)
T ss_pred EeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeecCcCe----eEeehhh-hhhheeEEeccCCce
Confidence 999999999999885 99999999999844 59999999999999986532 2222222 367999999999999
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeecCc------cceeEEEEEe---CCeEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGH------TKSILCMAVV---SDLVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h------~~~v~~~~~~---~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
.+.|+.+|.+++|+..... +..-..+.-| ...|+.+.+. ++.++..|.|..|||+|..+ -.++..|+
T Consensus 466 avIGt~~G~C~fY~t~~lk--~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--~~lv~KfK 541 (712)
T KOG0283|consen 466 AVIGTFNGYCRFYDTEGLK--LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--KDLVHKFK 541 (712)
T ss_pred EEEEEeccEEEEEEccCCe--EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc--hhhhhhhc
Confidence 9999999999999986432 2111111111 2278888875 34688999999999999643 34566777
Q ss_pred CCCC--cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 316 GHRG--PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 316 ~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
|+.+ .-...+|+.+ |++|++||.|..|.||++..+
T Consensus 542 G~~n~~SQ~~Asfs~D---------gk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 542 GFRNTSSQISASFSSD---------GKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccccCCcceeeeEccC---------CCEEEEeecCceEEEEeCCCC
Confidence 6654 2244566543 457999999999999998443
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=232.45 Aligned_cols=253 Identities=28% Similarity=0.474 Sum_probs=205.8
Q ss_pred ceeccceeee-cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCcee
Q 044557 5 SVVDHHCLTT-LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKL 81 (362)
Q Consensus 5 ~~~~~~~~~t-l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l 81 (362)
+..+.+.+.+ |.||.+.|+++.+. +.++++||.|.++|+||..++.+ ..++..|...+.++...+..+
T Consensus 234 ~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C---------~~~l~gh~stv~~~~~~~~~~ 304 (537)
T KOG0274|consen 234 DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC---------THSLQGHTSSVRCLTIDPFLL 304 (537)
T ss_pred ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE---------EEEecCCCceEEEEEccCceE
Confidence 3456667777 99999999999997 88999999999999999876542 223334667788888888889
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++|+.|.+|++|+++++.. ...+.+|.++|.++..+ +.++++|+
T Consensus 305 ~sgs~D~tVkVW~v~n~~~----------------------------------l~l~~~h~~~V~~v~~~--~~~lvsgs 348 (537)
T KOG0274|consen 305 VSGSRDNTVKVWDVTNGAC----------------------------------LNLLRGHTGPVNCVQLD--EPLLVSGS 348 (537)
T ss_pred eeccCCceEEEEeccCcce----------------------------------EEEeccccccEEEEEec--CCEEEEEe
Confidence 9999999999999975331 11223489999999987 78999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
.|++|++||+.+++++..+. +|+..|.++.+.+...+++|+.|++|++||+.+.. .++.++..|..-|..+.+ .
T Consensus 349 ~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~--~ 422 (537)
T KOG0274|consen 349 YDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLL--R 422 (537)
T ss_pred cCceEEEEEhhhceeeeeec-CCcceEEEEEecCcceEEeeeeccceEeecCCchh---hhhhhhcCCccccccccc--c
Confidence 99999999999999999987 79999999988876679999999999999998762 456677888888865544 6
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEe
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l 314 (362)
+++|++++.|++|++||..+++. ...+.+ |...|.++++..+.+++++.|+++++||+. .+++...+
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~----~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~--~~~~~~~l 490 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGEC----LRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLR--SGTLIRTL 490 (537)
T ss_pred cceeEeccccccEEEeecccCce----eeeeccCCcccEEEeecCcceEEEEecCCeeEEEecc--cCchhhhh
Confidence 78999999999999999987553 334555 678899998887789999999999999964 34444444
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-29 Score=229.00 Aligned_cols=243 Identities=30% Similarity=0.487 Sum_probs=193.7
Q ss_pred cceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
...+.++.+..+ .+++++.|+.+++|+...... . ......+|...|
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------~--------------------------~~~~l~~h~~~v 206 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------N--------------------------LLRELSGHTRGV 206 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------h--------------------------hhccccccccce
Confidence 446667777654 488899999999998843220 0 000113688899
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEEC-CCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRT-SDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~-~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
.+++|+|+++++++++.|++|+|||+ ..+.+++.+. +|...|.+++|+|+++ +++|+.|++|++||+.++. +.
T Consensus 207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~----~~ 281 (456)
T KOG0266|consen 207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE----CV 281 (456)
T ss_pred eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe----EE
Confidence 99999999999999999999999999 4457888775 9999999999999996 8899999999999998854 55
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce--eEEEEEeCC--eEEEeeCCCcEE
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS--ILCMAVVSD--LVCSGSADKTIR 299 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~--~~~s~s~D~~i~ 299 (362)
..+..|..+|++++|++++++|++++.|+.|++||...+... ....+.++... +.++.|+++ ++++++.|++++
T Consensus 282 ~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 282 RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 667889999999999999999999999999999999875421 23344555544 888888754 999999999999
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+|+.. ...++..+.+|...+.+ .|++. ....+.++++|+.|+.|++|++.
T Consensus 360 ~w~l~--~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 360 LWDLR--SGKSVGTYTGHSNLVRC-IFSPT-----LSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEEcc--CCcceeeecccCCccee-Eeccc-----ccCCCCeEEEEeCCceEEEEeCC
Confidence 99964 45678888999987533 33332 23556789999999999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=216.74 Aligned_cols=237 Identities=22% Similarity=0.418 Sum_probs=193.1
Q ss_pred cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcE
Q 044557 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKI 90 (362)
Q Consensus 15 l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i 90 (362)
+..|..+|+++.++ +.+++||+.+|.||+|+.+-... ..+...+...|++++++++ ++++++.||+|
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV---------k~~~ahh~eaIRdlafSpnDskF~t~SdDg~i 204 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV---------KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTI 204 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh---------HHhhHhhhhhhheeccCCCCceeEEecCCCeE
Confidence 57899999999994 88999999999999998542110 0111234478899988753 59999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
++||.....+.. .+.+|.-.|.|++|+|...++|+||.|+.|++||
T Consensus 205 kiWdf~~~kee~----------------------------------vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 205 KIWDFRMPKEER----------------------------------VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred EEEeccCCchhh----------------------------------eeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 999986433210 1136788899999999999999999999999999
Q ss_pred CCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec-CCCEEEEE
Q 044557 171 TSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSG 248 (362)
Q Consensus 171 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~ 248 (362)
.+++.|+.++. .|...|..+.|+|++. |++++.|..++++|+.+.+ -....++|...|+++.|+| ....+.+|
T Consensus 251 prSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk----El~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 251 PRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK----ELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred CCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH----HHHHhhcchhhheeeccccccccceeec
Confidence 99999998875 7999999999999987 8899999999999987543 2345678999999999999 55688899
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEee
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWR 302 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~ 302 (362)
+.||.|..|.+...++ +...-.+|...|.+++|.+ .+|++||.|+++|+|.
T Consensus 326 g~Dgsvvh~~v~~~~p---~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEP---LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cCCCceEEEecccccc---ccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999999863222 2223457999999999975 5899999999999996
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=200.35 Aligned_cols=238 Identities=22% Similarity=0.328 Sum_probs=191.3
Q ss_pred ceeEEEEEcC---ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 69 GAVKSLVVLA---DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 69 ~~v~~i~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
.....+.+++ +.+++++.||++++||+...... ...+..|...|
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P---------------------------------i~~~kEH~~EV 107 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP---------------------------------IHKFKEHKREV 107 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCcc---------------------------------hhHHHhhhhhe
Confidence 3455566654 46999999999999996432210 01124688999
Q ss_pred eEEEEecCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCccee
Q 044557 146 SALALTKDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 146 ~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.++.+++.. +.++++|+|++|++|+...++.+.++. +|...|...+|+|.. -+++++.|+..++||++...+...
T Consensus 108 ~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~- 185 (311)
T KOG0277|consen 108 YSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS- 185 (311)
T ss_pred EEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-
Confidence 999998754 568888999999999999999999986 799999999999865 378999999999999886643221
Q ss_pred ehhhhccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcE
Q 044557 223 VDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTI 298 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i 298 (362)
+..|...+.++.|+. +...|++|+.|+.||.||+++-+.. +..+.+|.-.|+.+.++|. +|+|+|.|-++
T Consensus 186 ---i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p---l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 186 ---IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP---LFELNGHGLAVRKVKFSPHHASLLASASYDMTV 259 (311)
T ss_pred ---EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc---ceeecCCceEEEEEecCcchhhHhhhccccceE
Confidence 567899999999997 6678999999999999999876543 4567899999999999874 89999999999
Q ss_pred EEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 299 RIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|||+.. +.-.++.+..-|++-|.++.|++-. +.++|+.++|..+.||+-
T Consensus 260 riw~~~-~~ds~~e~~~~HtEFv~g~Dws~~~--------~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 260 RIWDPE-RQDSAIETVDHHTEFVCGLDWSLFD--------PGQVASTGWDELLYVWNP 308 (311)
T ss_pred Eecccc-cchhhhhhhhccceEEecccccccc--------Cceeeecccccceeeecc
Confidence 999964 3344566778899999999887542 247999999999999984
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=237.61 Aligned_cols=273 Identities=16% Similarity=0.298 Sum_probs=200.6
Q ss_pred CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCC
Q 044557 38 DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLG 115 (362)
Q Consensus 38 Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 115 (362)
+|-+++|+...... ..... ...+..+.+.|.++.+.++ .+++++.|++|++|+........... ..
T Consensus 457 ~gl~~~~~~~~~~~--~~~~~--~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~----~~---- 524 (793)
T PLN00181 457 EGLCKYLSFSKLRV--KADLK--QGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI----HY---- 524 (793)
T ss_pred hhhhhhhcccceEE--EEeec--cccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc----cc----
Confidence 67788887654221 10100 0111235677888888754 59999999999999975321000000 00
Q ss_pred chhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEc
Q 044557 116 DRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS 194 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~ 194 (362)
.... ..+...+.+++|+|. +.+|++++.|++|++||+.+++.+..+. .|...|++++|+
T Consensus 525 ------------------~~~~-~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~ 584 (793)
T PLN00181 525 ------------------PVVE-LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYS 584 (793)
T ss_pred ------------------ceEE-ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEc
Confidence 0000 123456888999874 7899999999999999999988877764 799999999999
Q ss_pred C-CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe-cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe
Q 044557 195 D-DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS-CDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271 (362)
Q Consensus 195 ~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 271 (362)
| ++. +++|+.||+|++||+.++..... +. +...|.++.|+ ++|.+|++|+.|+.|++||++..... +..
T Consensus 585 p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~----~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~---~~~ 656 (793)
T PLN00181 585 SADPTLLASGSDDGSVKLWSINQGVSIGT----IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP---LCT 656 (793)
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCcEEEE----Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc---ceE
Confidence 6 555 88999999999999987653322 22 34578899995 57999999999999999999764322 234
Q ss_pred ecCccceeEEEEEe-CCeEEEeeCCCcEEEeeCCCC----ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC
Q 044557 272 LRGHTKSILCMAVV-SDLVCSGSADKTIRIWRGIDR----NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346 (362)
Q Consensus 272 ~~~h~~~v~~~~~~-~~~~~s~s~D~~i~~W~~~~~----~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s 346 (362)
+.+|...|.++.|. +..++++|.|++|++|+.... ...++..+.+|...+..++|++++ .+|++||
T Consensus 657 ~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~---------~~lasgs 727 (793)
T PLN00181 657 MIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD---------GYIATGS 727 (793)
T ss_pred ecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC---------CEEEEEe
Confidence 67899999999986 458999999999999996421 235678899999999999997653 4799999
Q ss_pred CCCcEEEEecccC
Q 044557 347 LDCDIKVWQISFP 359 (362)
Q Consensus 347 ~D~~i~~W~~~~~ 359 (362)
.|++|++|+...+
T Consensus 728 ~D~~v~iw~~~~~ 740 (793)
T PLN00181 728 ETNEVFVYHKAFP 740 (793)
T ss_pred CCCEEEEEECCCC
Confidence 9999999997544
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=200.24 Aligned_cols=280 Identities=24% Similarity=0.382 Sum_probs=211.2
Q ss_pred eeecccCccceeeeEec-----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 12 LTTLKGHNSYVSSLALA-----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~-----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
-.+..||+.+|..|+|+ |-+|++++.|+.--+-+-++ +.+...|. .|++.|.+..+..+ +.+++
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t--gdwigtfe-------ghkgavw~~~l~~na~~aasa 77 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT--GDWIGTFE-------GHKGAVWSATLNKNATRAASA 77 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC--CCcEEeee-------ccCcceeeeecCchhhhhhhh
Confidence 34567899999999995 55799999999877765444 23333333 35677766655544 57888
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|=+.++||.-++...+. ..|..-|.+++|+.|.++|++|+.++
T Consensus 78 aadftakvw~a~tgdelhs-----------------------------------f~hkhivk~~af~~ds~~lltgg~ek 122 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELHS-----------------------------------FEHKHIVKAVAFSQDSNYLLTGGQEK 122 (334)
T ss_pred cccchhhhhhhhhhhhhhh-----------------------------------hhhhheeeeEEecccchhhhccchHH
Confidence 9999999999765442110 24777889999999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
.+||+|++..+....-..+|.+.|..+-|+...+ +++.+.|++||+||..++...+++. .+.+|+++.++++|.
T Consensus 123 llrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-----~~s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 123 LLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-----FNSPVTSLEVSQDGR 197 (334)
T ss_pred HhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-----cCCCCcceeeccCCC
Confidence 9999999987644333458999999999986554 8888999999999999987666552 467899999999998
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEe-cCCCCc
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVL-EGHRGP 320 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l-~~h~~~ 320 (362)
+|.++. -+.|.+||..+-. ++...+. ...|.+-+..| ++++.|++|..++.||... +..+..+ +||-++
T Consensus 198 ilTia~-gssV~Fwdaksf~----~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~T--geEi~~~nkgh~gp 269 (334)
T KOG0278|consen 198 ILTIAY-GSSVKFWDAKSFG----LLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNT--GEEIGSYNKGHFGP 269 (334)
T ss_pred EEEEec-CceeEEecccccc----ceeeccC-ccccccccccCCCceEEecCcceEEEEEeccC--CceeeecccCCCCc
Confidence 877664 4679999987532 2222221 23355545544 5899999999999998643 3345554 899999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|.|+.|+|++. +-+|||.||+||||+..
T Consensus 270 VhcVrFSPdGE---------~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 270 VHCVRFSPDGE---------LYASGSEDGTIRLWQTT 297 (334)
T ss_pred eEEEEECCCCc---------eeeccCCCceEEEEEec
Confidence 99999998764 57899999999999984
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-29 Score=207.53 Aligned_cols=275 Identities=21% Similarity=0.335 Sum_probs=198.1
Q ss_pred ccceeeecccCccceeeeEecCc---EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALAGK---FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSA 84 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~~~---~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~ 84 (362)
....+..|.||.+.|.+++=..+ .++||+.||.|++||+..-.+ . ..+..|.+.|..|.+....++++
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--~-------~~f~AH~G~V~Gi~v~~~~~~tv 125 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--I-------RTFKAHEGLVRGICVTQTSFFTV 125 (433)
T ss_pred hccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh--h-------heeecccCceeeEEecccceEEe
Confidence 44466789999999999998643 589999999999999865321 1 12345678899998888889999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhh-hhccccccceeeee----eeeEEeeecCceeEEEEecCCC-EEE
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAI-KLLMPKNHVQIRRH----KTCTWVHHVDAVSALALTKDET-LLY 158 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~-~l~ 158 (362)
+.|.+|+.|.++.. +.+........+........ ...+....+.+++. ....+..-.+.|.++.|+|... +|+
T Consensus 126 gdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred cCCcceeeeeccCC-cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 99999999997652 11100000000000000000 01111222334433 3334444567899999999764 788
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~ 237 (362)
+|+.|+.|.+||+++..+++++.. ...-+.++|+|++. ++++++|..+..||+.... .......+|.+.|.+++
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVSAVMDVD 279 (433)
T ss_pred eeccCCceEEEecccCCccceeee--eccccceecCccccceeeccccccceehhhhhhc---ccchhhcccceeEEEec
Confidence 888999999999999988887653 23457899999775 8899999999999987543 44566788999999999
Q ss_pred EecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc---ceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 238 LSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT---KSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 238 ~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
|||.|+-+++||.|.+||||....+...- -.|+ +.|.|+.|+-+ +++|||.|+.||+|+.
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRd------iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRD------IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchh------hhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 99999999999999999999987533211 1233 45789999754 9999999999999985
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=196.44 Aligned_cols=246 Identities=23% Similarity=0.405 Sum_probs=194.5
Q ss_pred EeecceeEEEEEcCce--eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec
Q 044557 65 AVGKGAVKSLVVLADK--LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV 142 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~~--l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 142 (362)
..|++.|..+.+.++. +++++.|..|.+|++...+.. . ....+|.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN------~---------------------------~~lkgHs 90 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN------F---------------------------WVLKGHS 90 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc------e---------------------------eeecccc
Confidence 3467888888887764 999999999999997543310 0 0123799
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
+.|..+.|.+|++.++++|.|++|+.||++++++.+... .|+..|+++.-+.-|. +.+++.||++|+||.......+
T Consensus 91 gAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 91 GAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred ceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchhh
Confidence 999999999999999999999999999999999999885 7999999998554453 5689999999999998654433
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i 298 (362)
.+ ..+..++++.|..++..+++|+-|+.|++||++.++. +..+.||.+.|+.+..++ .++.+-+.|.++
T Consensus 170 t~-----~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 170 TF-----ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTV 240 (338)
T ss_pred cc-----ccceeEEEEEecccccceeeccccCceeeeccccCcc----eEEeecccCceeeEEeccCCCccccccccceE
Confidence 22 2356799999999999999999999999999986553 456889999999998875 489999999999
Q ss_pred EEeeCC--CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 299 RIWRGI--DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 299 ~~W~~~--~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++||.. .....|++.+.||.-.... +.-.|.|++++..+..||.|..+.+||..+
T Consensus 241 rvwd~rp~~p~~R~v~if~g~~hnfek-----nlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRCVKIFQGHIHNFEK-----NLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred EEEEecccCCCCceEEEeecchhhhhh-----hcceeeccCCCCccccccccceEEEeeccc
Confidence 999953 2345678888877543211 111244556667799999999999999854
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=208.04 Aligned_cols=309 Identities=18% Similarity=0.277 Sum_probs=211.0
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCceeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l~s 83 (362)
+..+-..|++|+..|.+++++ |-.|+|||.|.+|++||+......... | ..+.......+.++.+ .++.++.
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-f---r~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-F---RQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-h---hccCcccccccceeeecCCCCeEEE
Confidence 444556799999999999995 789999999999999998765432221 1 1111122345555554 4567888
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEEEC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSVSW 162 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~ 162 (362)
.+.....+++|-+.... +... ..+-.+..+ +...+|...++|.+|+|..+ .|+|++.
T Consensus 232 vsg~aqakl~DRdG~~~-------~e~~-KGDQYI~Dm--------------~nTKGHia~lt~g~whP~~k~~FlT~s~ 289 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEI-------VEFS-KGDQYIRDM--------------YNTKGHIAELTCGCWHPDNKEEFLTCSY 289 (641)
T ss_pred EecCcceeEEccCCcee-------eeee-ccchhhhhh--------------hccCCceeeeeccccccCcccceEEecC
Confidence 88888899998653221 0000 001111111 11247889999999999865 7999999
Q ss_pred CCcEEEEECCCceEEEee-----eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccc--cee
Q 044557 163 DRTIKIWRTSDFKCLESI-----TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS--GIN 234 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~-----~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~--~v~ 234 (362)
||++||||++..+....+ ..+..-++..++|+++|. +++|..||.|.+|+....... .....-..|.. .|+
T Consensus 290 DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~It 368 (641)
T KOG0772|consen 290 DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDIT 368 (641)
T ss_pred CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-cceEeeeccCCCCcee
Confidence 999999999876532222 123344789999999998 788999999999997443221 22233456766 899
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEee------CCCcEEEeeCCCC
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGS------ADKTIRIWRGIDR 306 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s------~D~~i~~W~~~~~ 306 (362)
+|+||+||++|++-|.|+++++||++..+..+.....+.. .-.-+.++|+++ +++||+ .-+++.+|+ ..
T Consensus 369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d--~~ 445 (641)
T KOG0772|consen 369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT-PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD--RM 445 (641)
T ss_pred EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc-cCCCCccccCCCceEEEecccccCCCCCceEEEEe--cc
Confidence 9999999999999999999999999875543322111111 112345667765 677765 346788887 34
Q ss_pred ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 307 NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 307 ~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
++..++.+.--...|..++|+|.-++ |..|+.||+++++-
T Consensus 446 t~d~v~ki~i~~aSvv~~~WhpkLNQ---------i~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 446 TLDTVYKIDISTASVVRCLWHPKLNQ---------IFAGSGDGTAHVYY 485 (641)
T ss_pred ceeeEEEecCCCceEEEEeecchhhh---------eeeecCCCceEEEE
Confidence 56667776655777888888876543 77888899999874
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=196.83 Aligned_cols=240 Identities=21% Similarity=0.370 Sum_probs=194.6
Q ss_pred ceeeecccCccceeeeEecC--cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALAG--KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~~--~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
-.+.||.||.+.|++..++. ..-|+++.|-+.++||.-++.. ...+ .|+..|.++++..| +|++|+
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde--lhsf--------~hkhivk~~af~~ds~~lltgg 119 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE--LHSF--------EHKHIVKAVAFSQDSNYLLTGG 119 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh--hhhh--------hhhheeeeEEecccchhhhccc
Confidence 36889999999999999964 4679999999999999765431 1111 13556777888765 599999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.+..+|+||++..+... .++.+|.+.|..+-|....+.+++.+.|++
T Consensus 120 ~ekllrvfdln~p~App---------------------------------~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 120 QEKLLRVFDLNRPKAPP---------------------------------KEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hHHHhhhhhccCCCCCc---------------------------------hhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 99999999997644211 122468889999999888889999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
||+||.+++..++.+.. ..+|+++.++++|++++-+..+.|+.||..+-...... .-+..|.+.+.+|+...+
T Consensus 167 VRLWD~rTgt~v~sL~~--~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~-----k~P~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEF--NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSY-----KMPCNVESASLHPKKEFF 239 (334)
T ss_pred eEEEEeccCcEEEEEec--CCCCcceeeccCCCEEEEecCceeEEeccccccceeec-----cCccccccccccCCCceE
Confidence 99999999999988863 45899999999999999999999999998765433221 135568899999999999
Q ss_pred EEEcCCCcEEEEeccCCCCcEEEEEe-ecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 246 YSGACDRSIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
++|+.|..++.||..+++. ++. .++|.++|.|+.|+|+ ..++||+||+||||..
T Consensus 240 VaGged~~~~kfDy~TgeE----i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEE----IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred EecCcceEEEEEeccCCce----eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 9999999999999987653 233 4899999999999875 8999999999999974
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=213.31 Aligned_cols=245 Identities=21% Similarity=0.361 Sum_probs=192.8
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc-eeEEEEEcC---cee
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG-AVKSLVVLA---DKL 81 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~---~~l 81 (362)
+++|++|+.||..+|.++.|+ |..++|+|.|++||+||++++.... ..+.+ ...++.+.+ +.+
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~-----------~f~~~~~~~cvkf~pd~~n~f 315 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS-----------RFHLDKVPTCVKFHPDNQNIF 315 (503)
T ss_pred CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE-----------EEecCCCceeeecCCCCCcEE
Confidence 488999999999999999995 8899999999999999998764211 11222 334444433 458
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++|+.|+.|+.||++.++. ++++..|.+.|..+.|-++++.+++.+
T Consensus 316 l~G~sd~ki~~wDiRs~kv----------------------------------vqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 316 LVGGSDKKIRQWDIRSGKV----------------------------------VQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred EEecCCCcEEEEeccchHH----------------------------------HHHHHhhhhheeeeEEccCCceEeeec
Confidence 8999999999999986541 112235788999999999999999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccc--eeEEEE
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG--INALAL 238 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~--v~~i~~ 238 (362)
+|++++||+.+....+..+...+...+.++..+|++. ++.=+.|+.|.+|.....- .......+.+|..+ -..+.|
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc-ccCHhhhhcceeccCceeeEEE
Confidence 9999999999887766655544555678899999998 5566889999999865432 22234456777643 456789
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEee
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWR 302 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~ 302 (362)
||||.+|++|+.||.+.+||..+-. ++..+++|.+.+..+.|.+ ..+||++.||.|++|+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~k----l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTK----LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhh----hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999987532 5677889999999999865 4899999999999995
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=203.82 Aligned_cols=261 Identities=24% Similarity=0.412 Sum_probs=195.9
Q ss_pred EEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 64 VAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 64 ~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
+..|.-++.++.+.++ +.++++.|++|.-|++..+......+.+-..+.. -. ....... ..|
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~-------~~-----~~~k~~r----~~h 201 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS-------HG-----NPLKESR----KGH 201 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh-------cc-----CCCCccc----ccc
Confidence 3445667888888776 7999999999999998765532111111000000 00 0000000 268
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCCCCCcc
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
...+.+++.++|++|||+|+.|..|.||+.++.+.++.+. +|.+.|.+++|-.+- ++++++.|++|++|+++..
T Consensus 202 ~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~---- 276 (479)
T KOG0299|consen 202 VKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL---- 276 (479)
T ss_pred cceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHh----
Confidence 8899999999999999999999999999999999888765 899999999997554 5999999999999998643
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-CeEEEeeCCCcEE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-DLVCSGSADKTIR 299 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~s~s~D~~i~ 299 (362)
.++.++.+|+..|..|....-++.+-+|+.|+++++|++.+.. ++ .+.+|.+.+.|++|.+ +.++|||.||.|.
T Consensus 277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---ql--ifrg~~~sidcv~~In~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---QL--IFRGGEGSIDCVAFINDEHFVSGSDNGSIA 351 (479)
T ss_pred HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc---ee--eeeCCCCCeeeEEEecccceeeccCCceEE
Confidence 4677888999999999988778888888899999999995432 12 2567888999999975 4899999999999
Q ss_pred EeeCCCCceeeeeEe----------cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 300 IWRGIDRNYTCLAVL----------EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l----------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+|+....+.-....+ ..+..+|++++..|.. .++||||++|.||+|.+.-.
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s---------dL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS---------DLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccC---------ceEEecCCCCceEEEEecCC
Confidence 999644332111111 1233489999987654 47999999999999998643
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=194.03 Aligned_cols=330 Identities=19% Similarity=0.284 Sum_probs=235.5
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
+..++.+.|.||.+.|+.++.. ...+.|+|.|.+.+||.++++.+ ...+ ..|.+.|.+|.+.+. .++
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C--L~~Y-------~GH~GSVNsikfh~s~~L~l 206 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC--LATY-------TGHTGSVNSIKFHNSGLLLL 206 (481)
T ss_pred eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc--eeee-------cccccceeeEEeccccceEE
Confidence 3567888899999999999985 34899999999999999987543 2222 235678888888654 488
Q ss_pred EEecCCcEEEEecCCCCCCcccc-----eeeeeccCCCchhhhhccc--cccceeeeeeeeEEeeecCceeEEEEecCCC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKY-----TRLATLPTLGDRAIKLLMP--KNHVQIRRHKTCTWVHHVDAVSALALTKDET 155 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 155 (362)
+++.|++..+|...-+-+..+.. ..-...... +.-...... .......+...+.+-+|...|.+..|-..++
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s-De~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS-DEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc-cccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc
Confidence 99999999999732111000000 000000000 000000000 0001112234455678999999999999999
Q ss_pred EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccccee
Q 044557 156 LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN 234 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~ 234 (362)
.++++++|++-.+||+++++.++.+. +|....+.++-+|..+ +++.+.|.+.++||+...- .....+++|...|+
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI---~sV~VFQGHtdtVT 361 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI---QSVAVFQGHTDTVT 361 (481)
T ss_pred eeeeeeccccceeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhhc---ceeeeeccccccee
Confidence 99999999999999999999998775 8999999999999887 6689999999999997432 23567889999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeee
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
++.|.-| ..+++|+.|.+|++||+++-...+..+.. ...+..++.+. ..++---.++.||+||+.......+.
T Consensus 362 S~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 362 SVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred EEEEecC-CceeecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 9999864 67899999999999999875544333321 23455566653 36777778899999997653332222
Q ss_pred --EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCccC
Q 044557 313 --VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLVR 362 (362)
Q Consensus 313 --~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~ 362 (362)
.-.||..-|.|++|..+... .-|.+++-|..+.=|++..|+.+
T Consensus 437 rtsRqgHrRMV~c~AW~eehp~-------cnLftcGFDR~v~gW~in~p~~~ 481 (481)
T KOG0300|consen 437 RTSRQGHRRMVTCCAWLEEHPA-------CNLFTCGFDRMVAGWKINTPTSN 481 (481)
T ss_pred cccccccceeeeeeeccccCcc-------cccccccccceeeeeEecccCCC
Confidence 34699999999999866432 23779999999999999998753
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=185.83 Aligned_cols=241 Identities=19% Similarity=0.357 Sum_probs=193.2
Q ss_pred eEEeecceeEEEEEc--CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 63 IVAVGKGAVKSLVVL--ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 63 ~~~~~~~~v~~i~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
++..++++|..+.++ +++.++++.|.+|++|+...+. ...++.+
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~----------------------------------liktYsg 57 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA----------------------------------LIKTYSG 57 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccc----------------------------------eeeeecC
Confidence 344567888888765 5679999999999999864332 1224457
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
|...|..++.+.|...|++|+.|+.+.+||+++++.++.+. +|...|+.++|+.+.. +++|+-|.++++||..+...
T Consensus 58 hG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~- 135 (307)
T KOG0316|consen 58 HGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF- 135 (307)
T ss_pred CCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCC-
Confidence 88899999999999999999999999999999999999985 8999999999998887 78999999999999876543
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCc
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKT 297 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~ 297 (362)
+.+..+......|.+|.++ +..|++|+.||++|.||++.++ ..... -..+|+|+.++++ ..+.++.|++
T Consensus 136 -ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~----l~sDy--~g~pit~vs~s~d~nc~La~~l~st 206 (307)
T KOG0316|consen 136 -EPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT----LSSDY--FGHPITSVSFSKDGNCSLASSLDST 206 (307)
T ss_pred -CccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce----eehhh--cCCcceeEEecCCCCEEEEeeccce
Confidence 3455566677789888875 6889999999999999998654 22222 2456888888754 8899999999
Q ss_pred EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+|+-| ..+++.++.+.||++.=..+..... .....+++||.||.+.+||+-
T Consensus 207 lrLlD--k~tGklL~sYkGhkn~eykldc~l~-------qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 207 LRLLD--KETGKLLKSYKGHKNMEYKLDCCLN-------QSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred eeecc--cchhHHHHHhcccccceeeeeeeec-------ccceeEEeccCCceEEEEEec
Confidence 99998 4567889999999987665544322 222468999999999999984
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-26 Score=187.28 Aligned_cols=254 Identities=18% Similarity=0.317 Sum_probs=184.7
Q ss_pred ccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEE
Q 044557 16 KGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVW 93 (362)
Q Consensus 16 ~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w 93 (362)
.+|.+-|.++.| +|+.+||||.|++|+|||.+..++.... +
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~---------------------------T---------- 52 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC---------------------------T---------- 52 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE---------------------------e----------
Confidence 579999999998 4999999999999999996543221100 0
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE-ec-CCCEEEEEECCCcEEEEEC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL-TK-DETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~-~~~~l~s~s~d~~i~iwd~ 171 (362)
..+..|.+.|.-+.| +| -|+.+|++|.|++++||.-
T Consensus 53 ------------------------------------------s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 53 ------------------------------------------SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred ------------------------------------------eeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 011124445555555 22 4789999999999999964
Q ss_pred CC---------ceEEEeeeccCcccEEEEEEcCCC---cEEEEeCCCeEEEEeCCCCCCcc--eeehh-------hhccc
Q 044557 172 SD---------FKCLESITNAHDDAINAVALSDDG---DVYTGSADKKIKVWRRSPGNKKH--SLVDV-------LERHN 230 (362)
Q Consensus 172 ~~---------~~~~~~~~~~h~~~v~~v~~~~~~---~~~s~~~dg~i~iw~~~~~~~~~--~~~~~-------~~~h~ 230 (362)
.. +....++. .....|++|.|.|.. ++++++.||.+|||+.-+..... ++... ...+.
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred cccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 11 11222333 456789999999864 48899999999999865432211 12222 23567
Q ss_pred cceeEEEEecC---CCEEEEEcCC-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC------eEEEeeCCC
Q 044557 231 SGINALALSCD---GSVLYSGACD-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD------LVCSGSADK 296 (362)
Q Consensus 231 ~~v~~i~~s~~---~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~s~s~D~ 296 (362)
.+..|+.|+|. ..+|+.|+.+ +.+.||...+...+...+..+.+|+..|+.++|.|+ ++|+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 78889999974 4577777766 478999887766677778889999999999999764 699999999
Q ss_pred cEEEeeCCC------------------CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 297 TIRIWRGID------------------RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 297 ~i~~W~~~~------------------~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|+||++.. -....+..+.+|...|+.+.|. -+|.+|+|.|+||+||+|+..|
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN---------mtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN---------MTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe---------eeeeEEeecCCCceeeehhhhh
Confidence 99998541 0124456788999999999884 4567899999999999998765
Q ss_pred C
Q 044557 359 P 359 (362)
Q Consensus 359 ~ 359 (362)
.
T Consensus 320 ~ 320 (361)
T KOG2445|consen 320 N 320 (361)
T ss_pred h
Confidence 4
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=191.40 Aligned_cols=234 Identities=21% Similarity=0.309 Sum_probs=181.6
Q ss_pred ccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeEEEecCCcEEE
Q 044557 19 NSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDHKIRV 92 (362)
Q Consensus 19 ~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~ 92 (362)
++.+..|+|+ .+.+++++.||++|+||+.....++ .+...|+..|.++.++. +.++++++|++|++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi--------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKL 131 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPI--------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKL 131 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcch--------hHHHhhhhheEEeccccccceeEEeeccCCceEe
Confidence 5667777884 4689999999999999964332211 12233566788887653 34778899999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-CCEEEEEECCCcEEEEEC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~ 171 (362)
|+.+.+. ..+++.+|..-|...+|+|- .++|+++|.|+++++||+
T Consensus 132 W~~~r~~----------------------------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdv 177 (311)
T KOG0277|consen 132 WDPNRPN----------------------------------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDV 177 (311)
T ss_pred ecCCCCc----------------------------------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEe
Confidence 9876432 12345678889999999984 579999999999999998
Q ss_pred CCc-eEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-CCEEEE
Q 044557 172 SDF-KCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD-GSVLYS 247 (362)
Q Consensus 172 ~~~-~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s 247 (362)
+.. +.+. + ..|...+.++.|+.-.. ++||+.|+.|+.||+.... ..+..+.+|...|..+.|||- ...|++
T Consensus 178 r~~gk~~~-i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sph~~~lLaS 252 (311)
T KOG0277|consen 178 RSPGKFMS-I-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGHGLAVRKVKFSPHHASLLAS 252 (311)
T ss_pred cCCCceeE-E-EeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCCceEEEEEecCcchhhHhhh
Confidence 764 4333 3 47888999999986543 8899999999999998654 335567899999999999995 468999
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCeEEEeeCCCcEEEee
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDLVCSGSADKTIRIWR 302 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D~~i~~W~ 302 (362)
++.|.++|+||.+.+.. .+++.+-|+..+..+.|+ +..+|+++-|..+++|+
T Consensus 253 asYDmT~riw~~~~~ds---~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 253 ASYDMTVRIWDPERQDS---AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccccceEEecccccchh---hhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 99999999999875443 344566789888888775 56999999999999997
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=187.89 Aligned_cols=239 Identities=20% Similarity=0.316 Sum_probs=183.2
Q ss_pred EEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--
Q 044557 75 VVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-- 152 (362)
Q Consensus 75 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-- 152 (362)
.+++.+|++++.|++|+++.+.+..+. ....++.+|.++|.-++|..
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~s-------------------------------~ll~~L~Gh~GPVwqv~wahPk 68 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQS-------------------------------KLLAELTGHSGPVWKVAWAHPK 68 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCCc-------------------------------eeeeEecCCCCCeeEEeecccc
Confidence 456778999999999999998754321 11234458999999999843
Q ss_pred CCCEEEEEECCCcEEEEECCCceEE--EeeeccCcccEEEEEEcCCCc---EEEEeCCCeEEEEeCCCCCCcceeehhhh
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCL--ESITNAHDDAINAVALSDDGD---VYTGSADKKIKVWRRSPGNKKHSLVDVLE 227 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~h~~~v~~v~~~~~~~---~~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 227 (362)
.|.+||+++.||.|.||+-++++-- ... ..|...|++|+|.|.+. |+.++.||+|.|.+.+... .........
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~ 146 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVF 146 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-Cccchhhhh
Confidence 7899999999999999998877422 222 26889999999999864 7789999999999877642 122233456
Q ss_pred ccccceeEEEEecC---C-----------CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC------
Q 044557 228 RHNSGINALALSCD---G-----------SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD------ 287 (362)
Q Consensus 228 ~h~~~v~~i~~s~~---~-----------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------ 287 (362)
.|.-+|++++|.|. | +.|++||.|+.|++|+..++ .......+.+|.+.|+.+++.|.
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s 224 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKS 224 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCce
Confidence 79999999999985 4 57999999999999998764 33444568999999999998753
Q ss_pred eEEEeeCCCcEEEeeCCCCce-eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 288 LVCSGSADKTIRIWRGIDRNY-TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~~~~~-~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.++|+|+||++.||....... -....|+.-...++.++|++.+ .+|+.++.|+.|.+|.-+
T Consensus 225 ~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG---------n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 225 TIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG---------NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred eeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccc---------cEEEEecCCcEEEEEEeC
Confidence 699999999999997432111 1122344456789999998654 579999999999999743
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-26 Score=210.95 Aligned_cols=200 Identities=14% Similarity=0.239 Sum_probs=148.0
Q ss_pred EeeecCceeEEEEecC-CCEEEEEECCCcEEEEECCCce--------EEEeeeccCcccEEEEEEcCCCc--EEEEeCCC
Q 044557 138 WVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWRTSDFK--------CLESITNAHDDAINAVALSDDGD--VYTGSADK 206 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg 206 (362)
+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+.. ++..+ .+|...|.+++|+|++. +++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 3478999999999997 7899999999999999997532 12223 47999999999999885 46889999
Q ss_pred eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE----
Q 044557 207 KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM---- 282 (362)
Q Consensus 207 ~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~---- 282 (362)
+|++||+.++..... + .|...|.+++|+|+|.+|++++.|+.|++||++++. .+..+.+|.+.+.+.
T Consensus 149 tIrIWDl~tg~~~~~----i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~----~i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 149 FVNIWDIENEKRAFQ----I-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE----IASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred eEEEEECCCCcEEEE----E-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc----EEEEEecccCCceeEEEEe
Confidence 999999987653322 2 255789999999999999999999999999998643 345677888654322
Q ss_pred -EEeC--CeEEEeeCCC----cEEEeeCCCCceeeeeEe--cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 283 -AVVS--DLVCSGSADK----TIRIWRGIDRNYTCLAVL--EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 283 -~~~~--~~~~s~s~D~----~i~~W~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
.+++ ++++|++.|+ +|+|||... ...++..+ ..+.+.+..... .+++.++++|+.|++||+
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~-~~~pl~~~~ld~~~~~L~p~~D---------~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKN-TTSALVTMSIDNASAPLIPHYD---------ESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCC-CCCceEEEEecCCccceEEeee---------CCCCCEEEEEECCCeEEE
Confidence 2223 4788877764 799999643 22334433 333333332221 245678889999999999
Q ss_pred Eecc
Q 044557 354 WQIS 357 (362)
Q Consensus 354 W~~~ 357 (362)
|++.
T Consensus 290 ~e~~ 293 (568)
T PTZ00420 290 YQHS 293 (568)
T ss_pred EEcc
Confidence 9985
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-28 Score=204.40 Aligned_cols=285 Identities=24% Similarity=0.352 Sum_probs=213.1
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
.+-++...|..|.+.|.++.|- +..|+||+.|..|++|+......++.. .+....+++.++.+..+ .++
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~-------tLaGs~g~it~~d~d~~~~~~i 235 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIS-------TLAGSLGNITSIDFDSDNKHVI 235 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhh-------hhhccCCCcceeeecCCCceEE
Confidence 3455667788999999999993 479999999999999997654322222 22233467888887654 388
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|+.+++|+++.... ..++.+|++.|+++.|......+++|+.
T Consensus 236 Aas~d~~~r~Wnvd~~r~----------------------------------~~TLsGHtdkVt~ak~~~~~~~vVsgs~ 281 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRL----------------------------------RHTLSGHTDKVTAAKFKLSHSRVVSGSA 281 (459)
T ss_pred eecCCCceeeeeccchhh----------------------------------hhhhcccccceeeehhhccccceeeccc
Confidence 899999999999875431 1233479999999999877766999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
|.+|++||+....|.+++.. ...+..|+.+ ...+++|-.|++|+.||..+....... .. .+.|+++..+++|
T Consensus 282 DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv----~~-gg~vtSl~ls~~g 353 (459)
T KOG0288|consen 282 DRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSV----PL-GGRVTSLDLSMDG 353 (459)
T ss_pred cchhhhhhhhhhheeccccc--cccccceEec-ceeeeecccccceEEEeccCCceeeEe----ec-CcceeeEeeccCC
Confidence 99999999999888887753 3455666655 334788899999999998876544332 22 3489999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc----ceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecC
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT----KSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~----~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
..|.+++.|.++.+.|++..+ +...+.... ...+.+.|+| +++++||.||.|+||+... .++.+.+..
T Consensus 354 ~~lLsssRDdtl~viDlRt~e----I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t--gKlE~~l~~ 427 (459)
T KOG0288|consen 354 LELLSSSRDDTLKVIDLRTKE----IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT--GKLEKVLSL 427 (459)
T ss_pred eEEeeecCCCceeeeeccccc----EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC--ceEEEEecc
Confidence 999999999999999998643 222222211 1245556665 4999999999999999754 455666654
Q ss_pred CCC--cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 317 HRG--PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 317 h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
-.+ .|++++|.|.+ ..|++++.++.+.+|.
T Consensus 428 s~s~~aI~s~~W~~sG---------~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 428 STSNAAITSLSWNPSG---------SGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCCcceEEEEEcCCC---------chhhcccCCcceEecC
Confidence 333 69999997654 4588999999999994
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=187.94 Aligned_cols=246 Identities=22% Similarity=0.324 Sum_probs=187.2
Q ss_pred ccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCc-ccceeeeccceeEEeecceeEEEEEc----CceeEEEecCC
Q 044557 16 KGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSS-ELDQEFLSNNNIVAVGKGAVKSLVVL----ADKLFSAHQDH 88 (362)
Q Consensus 16 ~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~l~s~~~dg 88 (362)
.+|.+.|.++.. +|+.||||++|++|||+....... .+..+ +..|.+++..+.+. +..|+++++||
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~-------L~Gh~GPVwqv~wahPk~G~iLAScsYDg 80 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAE-------LTGHSGPVWKVAWAHPKFGTILASCSYDG 80 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeE-------ecCCCCCeeEEeecccccCcEeeEeecCc
Confidence 579999988766 699999999999999999876432 22222 34578899988774 45699999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC--CCEEEEEECCCcE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD--ETLLYSVSWDRTI 166 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~i 166 (362)
.|-+|+.+++.- .+ ......|...|++++|.|. |-.|++++.||.|
T Consensus 81 kVIiWke~~g~w-----~k---------------------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~v 128 (299)
T KOG1332|consen 81 KVIIWKEENGRW-----TK---------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV 128 (299)
T ss_pred eEEEEecCCCch-----hh---------------------------hhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence 999998765431 11 1122358889999999876 4689999999999
Q ss_pred EEEECCCc--eEEEeeeccCcccEEEEEEcCC---C------------cEEEEeCCCeEEEEeCCCCCCcceeehhhhcc
Q 044557 167 KIWRTSDF--KCLESITNAHDDAINAVALSDD---G------------DVYTGSADKKIKVWRRSPGNKKHSLVDVLERH 229 (362)
Q Consensus 167 ~iwd~~~~--~~~~~~~~~h~~~v~~v~~~~~---~------------~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h 229 (362)
.|.+.+.. -.-..+...|...|++++|.|. | +|++|+.|+.|+||+.+++. ..+...+.+|
T Consensus 129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H 206 (299)
T KOG1332|consen 129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGH 206 (299)
T ss_pred EEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhc
Confidence 99987653 3344456689999999999875 2 38999999999999998763 3445568899
Q ss_pred ccceeEEEEecCC----CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE--eCCeEEEeeCCCcEEEeeC
Q 044557 230 NSGINALALSCDG----SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 230 ~~~v~~i~~s~~~----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~s~s~D~~i~~W~~ 303 (362)
...|+.++|+|.- .+|+++|.||++.+|....+.+ ......++.-...+..+.| ++++|+.++.|+.|.+|+.
T Consensus 207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e-~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE-PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 9999999999953 6899999999999998764322 2222223333455666666 4679999999999999984
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=191.41 Aligned_cols=242 Identities=19% Similarity=0.269 Sum_probs=180.7
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCceeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l~s~ 84 (362)
.-.+..|.||.++|+++.|+ |.+||||+.+|.|+||+..+....... .. .-..+.=+.+ .+..|+.|
T Consensus 96 ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~--~~-------e~~dieWl~WHp~a~illAG 166 (399)
T KOG0296|consen 96 GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL--DQ-------EVEDIEWLKWHPRAHILLAG 166 (399)
T ss_pred CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe--ec-------ccCceEEEEecccccEEEee
Confidence 33567789999999999994 899999999999999998764321111 00 0011111122 23458999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.||.+.+|.+.++.. ...+.+|..++++=.|.|+|+.++++..||
T Consensus 167 ~~DGsvWmw~ip~~~~----------------------------------~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQAL----------------------------------CKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred cCCCcEEEEECCCcce----------------------------------eeEecCCCCCcccccccCCCceEEEEecCc
Confidence 9999999999865321 123357888899999999999999999999
Q ss_pred cEEEEECCCceEEEeeec--------------------------------------------------cCcccEEEEEEc
Q 044557 165 TIKIWRTSDFKCLESITN--------------------------------------------------AHDDAINAVALS 194 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~--------------------------------------------------~h~~~v~~v~~~ 194 (362)
+|++||..+++++..+.. .++..+.++.+.
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 999999988776554420 122223334443
Q ss_pred CCC---c-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEE
Q 044557 195 DDG---D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVG 270 (362)
Q Consensus 195 ~~~---~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 270 (362)
|.. . .+.|+-||+|.|||+.....++.+ .|..+|+.+.|-+ ..+|++++.+|.|+.||.++++ ...
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-----~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~----l~~ 362 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-----EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ----LKF 362 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheec-----cCCCceEEEEEcC-cchheeeccCceEEeeeccccc----eEE
Confidence 332 2 356888999999999876544333 5888999999998 7899999999999999999865 456
Q ss_pred eecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 271 ALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 271 ~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
.+.||...|++++++++ +++|+|.|++.++++.
T Consensus 363 ~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 363 TYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 78899999999999765 8999999999999974
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=198.83 Aligned_cols=255 Identities=24% Similarity=0.319 Sum_probs=190.9
Q ss_pred cCccceeeeEe---cCcEEEEecCCCeEEEeecCCCCcccce--eeeccceeEEeecceeEEEEEcC---ceeEEEecCC
Q 044557 17 GHNSYVSSLAL---AGKFLYTGSSDNEVRSWDCNTFSSELDQ--EFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDH 88 (362)
Q Consensus 17 gH~~~V~~l~~---~~~~l~t~s~Dg~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg 88 (362)
-|.+.|..+.. ....+||++..+.|.|||.......... ++. ....+..|......+.++. ..|++++.|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~-Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECR-PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCC-CceEEEeecccccccccccccceeEeeccCCC
Confidence 38888888887 3678999999999999998764322111 111 1233455555455566653 3599999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-CCEEEEEECCCcEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-ETLLYSVSWDRTIK 167 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~ 167 (362)
+|.+||++......... .....+.+|.+.|..++|++- ..+|++++.|+.+.
T Consensus 201 ~i~lwdi~~~~~~~~~~---------------------------~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~ 253 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVV---------------------------DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM 253 (422)
T ss_pred cEEEEeccccccCCccc---------------------------cceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence 99999997543210000 011223579999999999884 56899999999999
Q ss_pred EEECCC--ceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-
Q 044557 168 IWRTSD--FKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG- 242 (362)
Q Consensus 168 iwd~~~--~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~- 242 (362)
|||+++ .++.. ...+|+.+|+|++|+|-+. ||||+.|++|++||+++... ....+.+|...|.+|.|+|..
T Consensus 254 iwD~R~~~~~~~~-~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 254 IWDTRSNTSKPSH-SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNE 329 (422)
T ss_pred EEEcCCCCCCCcc-cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCCCcceEEEEeCCCCC
Confidence 999995 33333 3458999999999999764 78999999999999987543 456778899999999999965
Q ss_pred CEEEEEcCCCcEEEEeccCCC----------CcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeC
Q 044557 243 SVLYSGACDRSIIVWEKEEDD----------GNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRG 303 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~ 303 (362)
..|+++|.|+.+.+||+..-. +...++-...||+..|..+.|.+. .++|+++|+.+.||+.
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 578899999999999975311 122234456799999999999875 8999999999999985
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=179.27 Aligned_cols=279 Identities=20% Similarity=0.330 Sum_probs=205.8
Q ss_pred cccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcE
Q 044557 15 LKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKI 90 (362)
Q Consensus 15 l~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i 90 (362)
|.||..+++.|.+ .|++|+||+.|.++.||=.-. ++...++ ..|.+.|.++.+.. ..+++++.|.++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n--GerlGty-------~GHtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN--GERLGTY-------DGHTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecC--Cceeeee-------cCCCceEEEEEecCCcceeeecccccee
Confidence 7899999999999 499999999999999995422 2233233 24678899887754 469999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC-----Cc
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD-----RT 165 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----~~ 165 (362)
++||+.++.. ++.. ....+|..+.|+++|++++.+.++ +.
T Consensus 77 kLWDv~tGk~-------la~~----------------------------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~ 121 (327)
T KOG0643|consen 77 KLWDVETGKQ-------LATW----------------------------KTNSPVKRVDFSFGGNLILASTDKQMGYTCF 121 (327)
T ss_pred EEEEcCCCcE-------EEEe----------------------------ecCCeeEEEeeccCCcEEEEEehhhcCcceE
Confidence 9999987652 1111 123467889999999988777655 57
Q ss_pred EEEEECCC-------ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEE
Q 044557 166 IKIWRTSD-------FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 166 i~iwd~~~-------~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~ 237 (362)
|.++|++. .++...+. .+.+.++.+-|.|-++ +++|..||.|.+||..++. .++...+.|...|+.+.
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q 197 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQ 197 (327)
T ss_pred EEEEEccCChhhhcccCceEEec-CCccceeeeeecccCCEEEEecCCCcEEEEEcccCc---eeeechhhhcccccccc
Confidence 99999873 33444454 4668899999999887 8899999999999998874 34445567899999999
Q ss_pred EecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeE-EEeeCCCc-E------------EEe
Q 044557 238 LSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLV-CSGSADKT-I------------RIW 301 (362)
Q Consensus 238 ~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~-~s~s~D~~-i------------~~W 301 (362)
++||..+++++|.|.+-++||..+-+ .+.++.. ..+|.+.+++| +++ +-|+.+.. | |+|
T Consensus 198 ~s~d~T~FiT~s~Dttakl~D~~tl~----v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy 272 (327)
T KOG0643|consen 198 FSRDRTYFITGSKDTTAKLVDVRTLE----VLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY 272 (327)
T ss_pred ccCCcceEEecccCccceeeecccee----eEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHH
Confidence 99999999999999999999987532 3334332 35677777765 344 34443321 1 111
Q ss_pred eCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 302 RGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 302 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+.. -.+.+...+||=++|+++||+|+++. -+||+.||.||+--.+
T Consensus 273 h~i--~eEEigrvkGHFGPINsvAfhPdGks---------YsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 273 HLI--FEEEIGRVKGHFGPINSVAFHPDGKS---------YSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHH--HHHHhccccccccCcceeEECCCCcc---------cccCCCCceEEEEEec
Confidence 100 01224567899999999999998753 6899999999997553
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=192.72 Aligned_cols=238 Identities=33% Similarity=0.539 Sum_probs=190.5
Q ss_pred eecceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC
Q 044557 66 VGKGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD 143 (362)
Q Consensus 66 ~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 143 (362)
.|...+.++.+.+ +.+++++.||.+++|++..... ......|..
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~----------------------------------~~~~~~~~~ 52 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL----------------------------------LRTLKGHTG 52 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc----------------------------------EEEEecCCc
Confidence 4567888888876 4688999999999999865431 011234667
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCccee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.+..+.|+|++++|++++.|+.|++|++.+.+.+..+. .|...+.++.|++++.++ +++.||.|++||+.+...
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---- 127 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC---- 127 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE----
Confidence 78899999999999999999999999999877666665 678899999999998755 555599999999975542
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEE
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRI 300 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~ 300 (362)
...+..|...|.++.|+|++.++++++.|+.|++||+...+ ....+..|...+.++.+.++ .+++++.|+.|++
T Consensus 128 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK----CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc----cceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence 23344688899999999999999999889999999997543 23345578888999999876 7888999999999
Q ss_pred eeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|+... ...+..+.+|...|.+++++++ +.++++++.|+.|++|++.
T Consensus 204 ~d~~~--~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 204 WDLST--GKCLGTLRGHENGVNSVAFSPD---------GYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred EECCC--CceecchhhcCCceEEEEEcCC---------CcEEEEEcCCCcEEEEEcC
Confidence 99643 4557778789999999999765 3578888889999999986
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=195.36 Aligned_cols=295 Identities=22% Similarity=0.335 Sum_probs=217.9
Q ss_pred ccceeeecc-cCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 8 DHHCLTTLK-GHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 8 ~~~~~~tl~-gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
+.++.++++ |...-+.|..| +|+||+|||-||.|.+||..++...+.-.+....+ .-....+|.|+.++.| .++
T Consensus 201 Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~-fMMmd~aVlci~FSRDsEMlA 279 (508)
T KOG0275|consen 201 PTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN-FMMMDDAVLCISFSRDSEMLA 279 (508)
T ss_pred hHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcc-eeecccceEEEeecccHHHhh
Confidence 334445544 34455666666 58999999999999999987643222111111111 2234678999999876 499
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+|+.||.|++|.+.++.... ++ . ..|...|+|+.|+.|+..+.+++.
T Consensus 280 sGsqDGkIKvWri~tG~ClR----rF-------------------------d----rAHtkGvt~l~FSrD~SqiLS~sf 326 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLR----RF-------------------------D----RAHTKGVTCLSFSRDNSQILSASF 326 (508)
T ss_pred ccCcCCcEEEEEEecchHHH----Hh-------------------------h----hhhccCeeEEEEccCcchhhcccc
Confidence 99999999999998764210 00 0 148889999999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec-
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC- 240 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~- 240 (362)
|.++||.-+.+++++..+. +|+..|+.+.|.++|. +++++.||+|++|+..+.++..++.. .+...+|+++-.-|
T Consensus 327 D~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~--~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 327 DQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP--LGTDYPVNSVILLPK 403 (508)
T ss_pred cceEEEeccccchhHHHhc-CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC--CCCcccceeEEEcCC
Confidence 9999999999999999885 8999999999999996 99999999999999888766544322 23456788877666
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC---c-cceeEEE-EEeCCeEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG---H-TKSILCM-AVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---h-~~~v~~~-~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
+..+++.+...++|++-++.. +++..+.. . ...|.|+ ..-++.+...++|+.++.+.... +++-.++.
T Consensus 404 npeh~iVCNrsntv~imn~qG-----QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s--G~LE~tl~ 476 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNMQG-----QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS--GKLERTLP 476 (508)
T ss_pred CCceEEEEcCCCeEEEEeccc-----eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec--Cceeeeee
Confidence 567899999999999998753 12333321 1 2334332 33456899999999999987543 45566788
Q ss_pred CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 316 GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 316 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
-|...|..++-+|. ..+|||=|.||.+++|.
T Consensus 477 VhEkdvIGl~HHPH---------qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 477 VHEKDVIGLTHHPH---------QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccccCcc---------cchhhhhcccchhhhcC
Confidence 89888888876553 45799999999999995
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=206.57 Aligned_cols=202 Identities=18% Similarity=0.306 Sum_probs=150.0
Q ss_pred EeeecCceeEEEEec-CCCEEEEEECCCcEEEEECCCce-------EEEeeeccCcccEEEEEEcCCC--cEEEEeCCCe
Q 044557 138 WVHHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFK-------CLESITNAHDDAINAVALSDDG--DVYTGSADKK 207 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~ 207 (362)
+.+|.+.|.+++|+| ++++|++|+.|++|++||+.+.. .+..+ .+|...|.+++|+|++ .+++++.|++
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 457999999999999 88999999999999999997642 34444 4799999999999975 3889999999
Q ss_pred EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee-EEEEEeC
Q 044557 208 IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI-LCMAVVS 286 (362)
Q Consensus 208 i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v-~~~~~~~ 286 (362)
|+|||+.++.. ...+..|...|.+++|+|+|.+|++++.|++|++||.+++. .+..+.+|.+.. ..+.|.+
T Consensus 150 VrIWDl~tg~~----~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~----~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 150 VNVWDVERGKA----VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT----IVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred EEEEECCCCeE----EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc----EEEEEecCCCCcceEEEEcC
Confidence 99999987643 33456789999999999999999999999999999998643 244566776543 3344543
Q ss_pred --CeEEEe----eCCCcEEEeeCCCCceeeeeEecCCC-CcEEEEEeeecCCccCCCCCceEEEecC-CCCcEEEEeccc
Q 044557 287 --DLVCSG----SADKTIRIWRGIDRNYTCLAVLEGHR-GPVKCLAAAIDNDRCDSSDTSYLVCSGS-LDCDIKVWQISF 358 (362)
Q Consensus 287 --~~~~s~----s~D~~i~~W~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~s-~D~~i~~W~~~~ 358 (362)
+.++++ +.|+.|++||.... ..++.....+. ..+....|+++ +.+|++|+ .|++||+||+..
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~~-~~p~~~~~~d~~~~~~~~~~d~d---------~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRKM-ASPYSTVDLDQSSALFIPFFDED---------TNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCCC-CCceeEeccCCCCceEEEEEcCC---------CCEEEEEEeCCCeEEEEEeeC
Confidence 456554 35899999996432 22344443333 34444445433 23566665 699999999963
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=190.83 Aligned_cols=278 Identities=19% Similarity=0.279 Sum_probs=212.1
Q ss_pred cceeeeEecC--cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEEEec
Q 044557 20 SYVSSLALAG--KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVWKI 95 (362)
Q Consensus 20 ~~V~~l~~~~--~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~ 95 (362)
..+.++...+ ..++||+.|.++-++|..... ....+. .|...+..+.+.+ +.+++++.|..|++|..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q--~l~~~~-------Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~ 290 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ--ILATLK-------GHTKKITSVKFHKDLDTVITASADEIIRVWSV 290 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhh--hhhhcc-------CcceEEEEEEeccchhheeecCCcceEEeecc
Confidence 4567777643 789999999999999976432 122222 2334455555554 34889999999999987
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK 175 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 175 (362)
...... .....|.++|+.+..+|.|.||++++.|++..+.|++++.
T Consensus 291 ~~~s~~----------------------------------~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~ 336 (506)
T KOG0289|consen 291 PLSSEP----------------------------------TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS 336 (506)
T ss_pred ccccCc----------------------------------cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc
Confidence 543210 0112588999999999999999999999999999999999
Q ss_pred EEEeeecc-CcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc
Q 044557 176 CLESITNA-HDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS 253 (362)
Q Consensus 176 ~~~~~~~~-h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~ 253 (362)
++...... ..-.+++.+|+|||. |.+|..||.|+|||+.++.. ...+.+|.++|.+|+|+.+|.+|++++.|+.
T Consensus 337 ~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~----~a~Fpght~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 337 QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN----VAKFPGHTGPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc----cccCCCCCCceeEEEeccCceEEEEEecCCe
Confidence 88766532 223589999999998 66899999999999987653 3456789999999999999999999999999
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEE--eCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCC
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDND 331 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~ 331 (362)
|++||++..... ..+ .+. ....+.++.| ++.+++.++.|=.|.+++-....+.++..+.-|++..+++.|.
T Consensus 413 V~lwDLRKl~n~-kt~-~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg---- 485 (506)
T KOG0289|consen 413 VKLWDLRKLKNF-KTI-QLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG---- 485 (506)
T ss_pred EEEEEehhhccc-cee-ecc-ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----
Confidence 999999875422 111 122 2235666666 4568999998877777765566788899999999999998884
Q ss_pred ccCCCCCceEEEecCCCCcEEEEec
Q 044557 332 RCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 332 ~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
....+++++|.|..+|++.+
T Consensus 486 -----~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 486 -----EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred -----ccceEEeeccchhheEEeec
Confidence 34478999999999998764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-25 Score=203.78 Aligned_cols=255 Identities=13% Similarity=0.198 Sum_probs=176.9
Q ss_pred EecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeEEEecCCcEEEEecCCCCCCcccceeeee
Q 044557 34 TGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDHKIRVWKINNQEPDHQKYTRLAT 110 (362)
Q Consensus 34 t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~ 110 (362)
.|+.++.|++|+..... ....+..|.+.|.++.+.+ +.|++++.|++|++|++......... .
T Consensus 49 gGG~~gvI~L~~~~r~~---------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---i-- 114 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKP---------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---I-- 114 (568)
T ss_pred CCCceeEEEeeecCCCc---------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---c--
Confidence 36678899999864321 1122345677899999875 36999999999999998643210000 0
Q ss_pred ccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCE-EEEEECCCcEEEEECCCceEEEeeeccCcccEE
Q 044557 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL-LYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN 189 (362)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~ 189 (362)
......+.+|...|.+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.
T Consensus 115 ---------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~ 171 (568)
T PTZ00420 115 ---------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLS 171 (568)
T ss_pred ---------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEE
Confidence 0011233568899999999999875 5789999999999999988766553 557899
Q ss_pred EEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE-----EEecCCCEEEEEcCCC----cEEEEec
Q 044557 190 AVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL-----ALSCDGSVLYSGACDR----SIIVWEK 259 (362)
Q Consensus 190 ~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i-----~~s~~~~~l~s~~~d~----~i~~wd~ 259 (362)
+++|+|+|. +++++.|+.|+|||+.++.. ...+.+|.+.+... .|++++.+|+++|.|+ +|++||+
T Consensus 172 SlswspdG~lLat~s~D~~IrIwD~Rsg~~----i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl 247 (568)
T PTZ00420 172 SLKWNIKGNLLSGTCVGKHMHIIDPRKQEI----ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL 247 (568)
T ss_pred EEEECCCCCEEEEEecCCEEEEEECCCCcE----EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence 999999998 66678899999999987653 23455677654432 3458999999988775 7999999
Q ss_pred cCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCC
Q 044557 260 EEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDND 331 (362)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~ 331 (362)
+....... ...+..+...+...... +.++++|+.|++||+|+........+..+. +..++.+++|.|...
T Consensus 248 r~~~~pl~-~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 248 KNTTSALV-TMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred CCCCCceE-EEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence 85433322 22333444433222222 347899999999999997544333333333 677889999998753
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-25 Score=204.29 Aligned_cols=269 Identities=18% Similarity=0.237 Sum_probs=186.2
Q ss_pred eEecCcEEEEecCCCeEEEeecCCCCccccee----eeccceeEEeecceeEEEEEcC---ceeEEEecCCcEEEEecCC
Q 044557 25 LALAGKFLYTGSSDNEVRSWDCNTFSSELDQE----FLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDHKIRVWKINN 97 (362)
Q Consensus 25 l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~----~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~w~~~~ 97 (362)
.++++..+++++.+..+..|+.......+... .......+..|.+.|.++.+.+ +.|++++.|++|++|++..
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 34556778889999999999865432111100 0111234566788999999875 3699999999999999865
Q ss_pred CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCcEEEEECCCceE
Q 044557 98 QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRTIKIWRTSDFKC 176 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~ 176 (362)
....... ......+.+|...|.+++|+|++ ++|++|+.|++|+|||+++++.
T Consensus 108 ~~~~~~~---------------------------~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~ 160 (493)
T PTZ00421 108 EGLTQNI---------------------------SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA 160 (493)
T ss_pred Ccccccc---------------------------CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE
Confidence 3210000 00112345788999999999985 6999999999999999999888
Q ss_pred EEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccc-eeEEEEecCCCEEEEEc----C
Q 044557 177 LESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG-INALALSCDGSVLYSGA----C 250 (362)
Q Consensus 177 ~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~-v~~i~~s~~~~~l~s~~----~ 250 (362)
+..+. .|...|.+++|+|+|. +++++.||+|++||+.++... ..+..|... +..+.|.+++..+++++ .
T Consensus 161 ~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v----~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 161 VEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV----SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred EEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE----EEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence 77664 7889999999999997 789999999999999876532 234556654 34677888888887665 4
Q ss_pred CCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEEe--CCeEEEee-CCCcEEEeeCCCCceeeeeEec-CCCCcEEEEE
Q 044557 251 DRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAVV--SDLVCSGS-ADKTIRIWRGIDRNYTCLAVLE-GHRGPVKCLA 325 (362)
Q Consensus 251 d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~~--~~~~~s~s-~D~~i~~W~~~~~~~~~~~~l~-~h~~~v~~~~ 325 (362)
|++|++||++....... ....+. ..+....|+ +.++++++ .|+.|++|++.... ++..+. .+..++.+++
T Consensus 236 Dr~VklWDlr~~~~p~~---~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~--~~~~~~~~s~~~~~g~~ 310 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYS---TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER--LTFCSSYSSVEPHKGLC 310 (493)
T ss_pred CCeEEEEeCCCCCCcee---EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc--eEEEeeccCCCCCcceE
Confidence 78999999986443322 122222 233334454 34677766 69999999975433 333332 3566788888
Q ss_pred eeecC
Q 044557 326 AAIDN 330 (362)
Q Consensus 326 ~~~~~ 330 (362)
|.|..
T Consensus 311 ~~pk~ 315 (493)
T PTZ00421 311 MMPKW 315 (493)
T ss_pred ecccc
Confidence 88864
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=212.67 Aligned_cols=311 Identities=20% Similarity=0.298 Sum_probs=219.2
Q ss_pred ecccC-ccceeeeEe--cCcEEEEec--CCCeEEEeecCCCCcc---cceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 14 TLKGH-NSYVSSLAL--AGKFLYTGS--SDNEVRSWDCNTFSSE---LDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 14 tl~gH-~~~V~~l~~--~~~~l~t~s--~Dg~i~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
++-+| ...|.+|+. ++..++||+ .|+.+++|+.+.-..+ ...........+..|.+.|.|+.+++| +|++
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 44555 456788888 478999999 9999999997643211 111122233445667889999988776 5999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeee-eeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRH-KTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
|+.|+.|.+|+..... ... .+....+...+.+. ....+.+|...|..++|+|++.+||++|-
T Consensus 87 GSDD~~v~iW~~~~~~-~~~----------------~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIG-SGT----------------VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL 149 (942)
T ss_pred ccCcceEEEeeecccC-Ccc----------------cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc
Confidence 9999999999876311 000 00011111111122 22345679999999999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc--cccceeEEEEe
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER--HNSGINALALS 239 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--h~~~v~~i~~s 239 (362)
|++|.|||..+++++..+. +|...|..+.|.|-|+ |++-+.|++|++|...+....+.+..-++. -..-+..+.||
T Consensus 150 DnsViiwn~~tF~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLR-GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred cceEEEEccccceeeeeee-cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence 9999999999998777664 8999999999999998 778899999999997664333332222211 12346789999
Q ss_pred cCCCEEEEEcC----CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-------C------------eEEEeeCCC
Q 044557 240 CDGSVLYSGAC----DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-------D------------LVCSGSADK 296 (362)
Q Consensus 240 ~~~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~------------~~~s~s~D~ 296 (362)
|||++|++.-. -.++.+.+.. .+..-..+-||.+++.++.|.+ . .+|+||.|+
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~----tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERG----TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecC----CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 99999998743 2345666543 2333456779999999999863 1 578999999
Q ss_pred cEEEeeCCC-CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 297 TIRIWRGID-RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 297 ~i~~W~~~~-~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+|-||.... +....++.+. ...|.+++|+|++ ..|..+|.||+|.+..++
T Consensus 305 SlSVW~T~~~RPl~vi~~lf--~~SI~DmsWspdG---------~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 305 SLSVWNTALPRPLFVIHNLF--NKSIVDMSWSPDG---------FSLFACSLDGTVALIHFE 355 (942)
T ss_pred cEEEEecCCCCchhhhhhhh--cCceeeeeEcCCC---------CeEEEEecCCeEEEEEcc
Confidence 999997422 2223333443 4469999998775 458899999999998764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=209.00 Aligned_cols=238 Identities=27% Similarity=0.456 Sum_probs=188.7
Q ss_pred ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE
Q 044557 79 DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 79 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
++|++|+.||.|++|++.......+ .+ ....+..|.+.|..+....+++.|+
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s-------~~---------------------~~asme~HsDWVNDiiL~~~~~tlI 89 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPS-------TP---------------------YIASMEHHSDWVNDIILCGNGKTLI 89 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcc-------cc---------------------hhhhhhhhHhHHhhHHhhcCCCceE
Confidence 4599999999999999864321100 00 0112357999999999999999999
Q ss_pred EEECCCcEEEEECCCc--eEEEeeeccCcccEEEEEE-cCCCc-EEEEeCCCeEEEEeCCCCCC-------cceeehhhh
Q 044557 159 SVSWDRTIKIWRTSDF--KCLESITNAHDDAINAVAL-SDDGD-VYTGSADKKIKVWRRSPGNK-------KHSLVDVLE 227 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~--~~~~~~~~~h~~~v~~v~~-~~~~~-~~s~~~dg~i~iw~~~~~~~-------~~~~~~~~~ 227 (362)
++|.|-+|++|+.... -|+.++ ..|.+.|.|+++ .++.. +++|+-|+.|.+||+.++.. ..+......
T Consensus 90 S~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 90 SASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred EecCCceEEEeecccCcchhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 9999999999998876 355555 479999999999 56555 78999999999999987621 111111122
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~ 305 (362)
++..+|.+++..+.|..+++||..+.+++||-++... +..+.||+..|.++-.+.+ .++|+|.||+||+|++.
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k----imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg- 243 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK----IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG- 243 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccc----eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc-
Confidence 6788999999999999999999999999999887543 3356799999999988654 89999999999999964
Q ss_pred CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 306 RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 306 ~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
...|++++..|++.||+++.+|+- ..+.+|+.||.|..=|+..|.
T Consensus 244 -qQrCl~T~~vH~e~VWaL~~~~sf---------~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 244 -QQRCLATYIVHKEGVWALQSSPSF---------THVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred -ccceeeeEEeccCceEEEeeCCCc---------ceEEecCCCCcEEecccCCch
Confidence 457899999999999999887654 358999999999988887653
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=193.77 Aligned_cols=243 Identities=23% Similarity=0.383 Sum_probs=185.9
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
.++.+||.||..+|..|.|+ .+|+++|+.|..+++||+.++. ....+... +...+.+.++.+| ++++|
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd--~~~~y~~~------~~~S~~sc~W~pDg~~~V~G 330 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD--LRHLYPSG------LGFSVSSCAWCPDGFRFVTG 330 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch--hhhhcccC------cCCCcceeEEccCCceeEec
Confidence 45789999999999999996 6799999999999999988754 22222211 1235666777766 49999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|+++..|+++...... +.. -....|.+++.++||+++++.+.|.
T Consensus 331 s~dr~i~~wdlDgn~~~~-------------------W~g---------------vr~~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 331 SPDRTIIMWDLDGNILGN-------------------WEG---------------VRDPKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred CCCCcEEEecCCcchhhc-------------------ccc---------------cccceeEEEEEcCCCcEEEEEeccc
Confidence 999999999987543110 000 0113478999999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCcceeehhhhccccceeE--EEEec-
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA--LALSC- 240 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~--i~~s~- 240 (362)
.|++++.++......+. ..++|++.+++.+++++ +--.+.+|.+||++.. .++....+|...-.- -+|..
T Consensus 377 ~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~----~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 377 KIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN----KLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred ceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh----hHHHHhhcccccceEEEeccCCC
Confidence 99999988776554333 45689999999999854 5668999999999843 344455667654332 24443
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRG 303 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~ 303 (362)
+..++++||.|+.|++|+..++. .+..+.||...|.|++++| .++||+|.||+||||..
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgk----ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGK----LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CcceEEecCCCceEEEEEccCCc----eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 55899999999999999988644 5678999999999999975 49999999999999974
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=177.85 Aligned_cols=263 Identities=17% Similarity=0.228 Sum_probs=193.8
Q ss_pred eecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE---cCceeEEEecC
Q 044557 13 TTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV---LADKLFSAHQD 87 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~---~~~~l~s~~~d 87 (362)
+.+++|.+.|.+|+| +|..+++|+.|+++++|+++.......... ..|.+.|..+.+ .++.+++++.|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~-------~gh~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVY-------RGHTDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcc-------cCCCcchhhheeCCCCCcceEEecCC
Confidence 568899999999999 499999999999999999876421111111 122333433433 35779999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
.+|++||++...+... . .....-.-+.|+|+|.+++.++.|..|.
T Consensus 87 k~ir~wd~r~~k~~~~-------i----------------------------~~~~eni~i~wsp~g~~~~~~~kdD~it 131 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTAR-------I----------------------------ETKGENINITWSPDGEYIAVGNKDDRIT 131 (313)
T ss_pred ceEEEEEeccCcEEEE-------e----------------------------eccCcceEEEEcCCCCEEEEecCcccEE
Confidence 9999999986653211 0 0112224577999999999999999999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY 246 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 246 (362)
..|.++.+.+.... ....+.-++|+-++. ++.....|.|.|-....-+ ....++.|+....||.|+|+|+++|
T Consensus 132 ~id~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk----pv~si~AH~snCicI~f~p~GryfA 205 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK----PVQSIKAHPSNCICIEFDPDGRYFA 205 (313)
T ss_pred EEEecccceeehhc--ccceeeeeeecCCCCEEEEecCCceEEEEeccccc----cccccccCCcceEEEEECCCCceEe
Confidence 99999988776553 344677788876665 5566667999998765443 3445678999999999999999999
Q ss_pred EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEE
Q 044557 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~ 324 (362)
+|+.|..+.+||+++-- -+..+.-+.-+|+.++|+ +.+||++|+|..|-|=... ++..+..+. |.++-..+
T Consensus 206 ~GsADAlvSLWD~~ELi----C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve--tGd~~~eI~-~~~~t~tV 278 (313)
T KOG1407|consen 206 TGSADALVSLWDVDELI----CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE--TGDRVWEIP-CEGPTFTV 278 (313)
T ss_pred eccccceeeccChhHhh----hheeeccccCceEEEEeccCcceeeccCccceEEeEecc--cCCeEEEee-ccCCceeE
Confidence 99999999999987532 233445566678888876 5699999999999887643 344455553 78888899
Q ss_pred EeeecC
Q 044557 325 AAAIDN 330 (362)
Q Consensus 325 ~~~~~~ 330 (362)
||+|..
T Consensus 279 AWHPk~ 284 (313)
T KOG1407|consen 279 AWHPKR 284 (313)
T ss_pred EecCCC
Confidence 998764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-26 Score=185.76 Aligned_cols=296 Identities=20% Similarity=0.303 Sum_probs=203.1
Q ss_pred eecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCc-cccee-----eecc---ceeEEeecceeEEEEEcCc--
Q 044557 13 TTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSS-ELDQE-----FLSN---NNIVAVGKGAVKSLVVLAD-- 79 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~-~~~~~-----~~~~---~~~~~~~~~~v~~i~~~~~-- 79 (362)
..+..|.+++++-+|+ |.++||||.|-.|||.|++..-. +...+ .... .+.+..|...|..+.+-+.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 3467899999999994 88999999999999999873110 01100 0011 1122335567888887764
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS 159 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 159 (362)
.|++++.|++|+++|...... .+.... .....+|++++|+|.|.+|+.
T Consensus 186 ILiS~srD~tvKlFDfsK~sa---------------KrA~K~-----------------~qd~~~vrsiSfHPsGefllv 233 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSA---------------KRAFKV-----------------FQDTEPVRSISFHPSGEFLLV 233 (430)
T ss_pred eEEeccCCCeEEEEecccHHH---------------HHHHHH-----------------hhccceeeeEeecCCCceEEE
Confidence 489999999999999853210 000000 123467999999999999999
Q ss_pred EECCCcEEEEECCCceEEEe--eeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccc-cceeE
Q 044557 160 VSWDRTIKIWRTSDFKCLES--ITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHN-SGINA 235 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~--~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~-~~v~~ 235 (362)
|.+-..+++||+++.+|.-. -...|++.|++|.+++.+. +++++.||.||+||--+..+..++ -..|. ..|.+
T Consensus 234 gTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~---~~AH~gsevcS 310 (430)
T KOG0640|consen 234 GTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTI---GNAHGGSEVCS 310 (430)
T ss_pred ecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHH---HhhcCCceeee
Confidence 99999999999999988643 2356999999999999998 679999999999986655433222 12354 47899
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee---EEEEEe--CCeEEEee-CCCcEEEeeCCCCcee
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI---LCMAVV--SDLVCSGS-ADKTIRIWRGIDRNYT 309 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v---~~~~~~--~~~~~s~s-~D~~i~~W~~~~~~~~ 309 (362)
..|..+|++|++.|.|..+++|.+.+++.-....+ .|-++.. +.-.|. .++++.-. ..+.+.-||... ..
T Consensus 311 a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG--Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt--ad 386 (430)
T KOG0640|consen 311 AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG--AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART--AD 386 (430)
T ss_pred EEEccCCeEEeecCCcceeeeeeecCCceEEEEec--CCcccchhhhhhhhhcCccceEEccccccCceeeccccc--hh
Confidence 99999999999999999999999987653221111 1111111 111122 23444322 235577898532 22
Q ss_pred eeeE-ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 310 CLAV-LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 310 ~~~~-l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.+.. -.||.+++..+.-+|.+. -++++|.|-.+|+|--
T Consensus 387 r~~l~slgHn~a~R~i~HSP~~p---------~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 387 RVALLSLGHNGAVRWIVHSPVEP---------AFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhcccCCCCCceEEEeCCCCC---------ceeeecccceeeeeee
Confidence 2222 248999999987776542 3779999999999964
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=197.71 Aligned_cols=323 Identities=18% Similarity=0.250 Sum_probs=226.4
Q ss_pred cceeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--
Q 044557 4 LSVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-- 79 (362)
Q Consensus 4 ~~~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 79 (362)
|+-++-.|...++||++.|.+|+.+ |.+|++||.||+||||.+.++-+..... ..+.|.++++++.
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----------~d~~I~~vaw~P~~~ 454 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----------FDSEIRSVAWNPLSD 454 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----------ecceeEEEEecCCCC
Confidence 4556667888899999999999984 8899999999999999988754332222 1357888888754
Q ss_pred -eeEEEecCCcEEEEecCCCCCCcc--cceeeeeccCC--CchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC
Q 044557 80 -KLFSAHQDHKIRVWKINNQEPDHQ--KYTRLATLPTL--GDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE 154 (362)
Q Consensus 80 -~l~s~~~dg~i~~w~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 154 (362)
.++.++.+..+.+-+..-+..... ....+...|.. .+.....+......+... ..+..+.|...|..+.|+..|
T Consensus 455 ~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~-~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 455 LCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEK-GVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred ceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhcc-ceEEEEecCCccceeeeecCC
Confidence 255555556666665433211110 00111111110 011111121111111111 245667899999999999999
Q ss_pred CEEEEEECC---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcccc
Q 044557 155 TLLYSVSWD---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS 231 (362)
Q Consensus 155 ~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~ 231 (362)
.||++...+ ..|.|+++...+....+.. -.+.|.++.|+|....+..++-..|+|||+..+ .+.+.+.....
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq----elvKkL~tg~k 608 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ----ELVKKLLTGSK 608 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCceEEEEeccceEEEehhHH----HHHHHHhcCCe
Confidence 999998654 5788999987765555543 345788999999887555555678999998754 34444445566
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC-----
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI----- 304 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~----- 304 (362)
.|..++++|.|..|+.|+.|+.+..||+.-.... ..+++-|...+++++|.+. +++|||.|+++.++-..
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskP---yk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP---YKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccCcch---hHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence 7999999999999999999999999999765433 3456779999999999875 89999999999999521
Q ss_pred --CCceeeeeEecCCCCc----EEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 305 --DRNYTCLAVLEGHRGP----VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 305 --~~~~~~~~~l~~h~~~----v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
+.-..+++.|.||... |..+.|+| ...+|.|++.||+||+|
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP---------~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHP---------RQPWLFSAGADGTIRLF 732 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccC---------CCceEEecCCCceEEee
Confidence 2335678899999876 76666655 44678899999999999
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=180.91 Aligned_cols=293 Identities=21% Similarity=0.346 Sum_probs=202.3
Q ss_pred ccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeec-cceeE-----EeecceeEEEEEcC---ceeEE
Q 044557 16 KGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLS-NNNIV-----AVGKGAVKSLVVLA---DKLFS 83 (362)
Q Consensus 16 ~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~-~~~~~-----~~~~~~v~~i~~~~---~~l~s 83 (362)
+.|.+.|.+|.++ |+|+++|+.||.|-+||++.........+.. ..+++ ..|+-.|..+.+.+ ..+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4699999999984 8999999999999999997643111111110 11111 12334566665554 23667
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC---CEEEEE
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE---TLLYSV 160 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~ 160 (362)
++.|.++++||.++..... .....+.|.+-+++|-. .++|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~-----------------------------------~F~me~~VYshamSp~a~sHcLiA~g 164 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAV-----------------------------------DFKMEGKVYSHAMSPMAMSHCLIAAG 164 (397)
T ss_pred ccccceEEEeecccceeeE-----------------------------------EeecCceeehhhcChhhhcceEEEEe
Confidence 8899999999987533100 01123344455555543 368888
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCC-----------Ccceeehhhh
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGN-----------KKHSLVDVLE 227 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~-----------~~~~~~~~~~ 227 (362)
..|-.|++-|+.++.+-+.+. +|.+.|.+|.|+|... |++|+.||.||+||+.... +.....+...
T Consensus 165 tr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ 243 (397)
T KOG4283|consen 165 TRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNT 243 (397)
T ss_pred cCCCcEEEEeccCCcceeeec-cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccc
Confidence 899999999999999988875 8999999999999886 7899999999999986431 1111223455
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee-EE--E-EEeCCeEEEeeCCCcEEEeeC
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI-LC--M-AVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v-~~--~-~~~~~~~~s~s~D~~i~~W~~ 303 (362)
.|.+.|+.++|+.|+.++++.+.|..+++|+.++++..+...+.. .|.+.+ .. + ....+.++---.|+++.++.+
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~-~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~ 322 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI-IHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNL 322 (397)
T ss_pred cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc-cccccccceEEEeecccceEEEEecCCeEEEEEc
Confidence 688999999999999999999999999999998766543322211 122211 00 1 112233444444577888875
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.. +..+..+.+|-..|.+.++.|+-++ ..+|+.|+.|..|-.
T Consensus 323 ~s--gs~ir~l~~h~k~i~c~~~~~~fq~---------~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 323 LE--GSFVRRLSTHLKRINCAAYRPDFEQ---------CFTGDMNGNIYMWSP 364 (397)
T ss_pred cC--ceEEEeeecccceeeEEeecCchhh---------hhccccCCccccccc
Confidence 43 4457778889889999988776543 668999999999965
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=192.75 Aligned_cols=242 Identities=16% Similarity=0.292 Sum_probs=184.6
Q ss_pred ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EE
Q 044557 79 DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LL 157 (362)
Q Consensus 79 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 157 (362)
+.+++.+..+.|.+||............ .. .....+.+|.+.=.+++|++... .|
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--~~----------------------~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASG--EC----------------------RPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccc--cC----------------------CCceEEEeecccccccccccccceeE
Confidence 3477778899999999865332111000 00 01123456777667788988654 69
Q ss_pred EEEECCCcEEEEECCCceE------EEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhcc
Q 044557 158 YSVSWDRTIKIWRTSDFKC------LESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERH 229 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~------~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h 229 (362)
++++.|+.|++||++.... ...+..+|++.|..++|++-.. |.+++.|+.+.|||.++. ..+.......|
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah 271 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAH 271 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCccccccc
Confidence 9999999999999875322 2345568999999999998654 789999999999999863 22344456789
Q ss_pred ccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCC
Q 044557 230 NSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 230 ~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~ 305 (362)
.++|++++|+| ++..||+||.|++|.+||+++-.. .+..+.+|...|.++.|+|. .++|++.|+.+.+||+..
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 99999999999 667889999999999999987544 45678999999999999875 799999999999999632
Q ss_pred C------------ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 306 R------------NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 306 ~------------~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
- ...++-+--||...|..+.|.|.. .+.|+|++.|+.+.||+++
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e--------PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE--------PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccChhhhccCCcceeEEecCcccccccccCCCCC--------CeEEEEecCCceEEEeecc
Confidence 1 112233445999999999887754 3789999999999999987
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=200.26 Aligned_cols=266 Identities=20% Similarity=0.343 Sum_probs=201.5
Q ss_pred ecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCccc
Q 044557 27 LAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQK 104 (362)
Q Consensus 27 ~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~ 104 (362)
|+..-++..+....|.+|+..+..... ....+...++++.+.+ ..|+.|..+|.|.+||.......
T Consensus 185 Wss~n~laValg~~vylW~~~s~~v~~---------l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--- 252 (484)
T KOG0305|consen 185 WSSANVLAVALGQSVYLWSASSGSVTE---------LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--- 252 (484)
T ss_pred cccCCeEEEEecceEEEEecCCCceEE---------eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc---
Confidence 333334444466789999976533111 1112256788888874 46999999999999998654311
Q ss_pred ceeeeeccCCCchhhhhccccccceeeeeeeeEEee-ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc
Q 044557 105 YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH-HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA 183 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 183 (362)
..+.+ |...|.+++|+ +..+.+|+.|+.|..+|++..+.......+
T Consensus 253 -------------------------------~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~ 299 (484)
T KOG0305|consen 253 -------------------------------RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQG 299 (484)
T ss_pred -------------------------------ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence 01123 88899999998 678999999999999999987655444568
Q ss_pred CcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec-CCCEEEEEc--CCCcEEEEec
Q 044557 184 HDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGA--CDRSIIVWEK 259 (362)
Q Consensus 184 h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~--~d~~i~~wd~ 259 (362)
|.+.|..++|++++. +++|+.|+.+.|||.....+.. .+..|.+.|.+++|+| ....||+|+ .|+.|++||.
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~----~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF----TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCCCccccE----EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 999999999999997 8999999999999985544333 3457999999999999 677888876 6999999998
Q ss_pred cCCCCcEEEEEeecCccceeEEEEEeCCe--EEE--eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCC
Q 044557 260 EEDDGNILVVGALRGHTKSILCMAVVSDL--VCS--GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDS 335 (362)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~s--~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~ 335 (362)
..+. .+.... -...|..+.|++.. +++ |-.+..|.||++. ..+.+..+.||...|..++++|++.
T Consensus 376 ~~g~----~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p--s~~~~~~l~gH~~RVl~la~SPdg~---- 444 (484)
T KOG0305|consen 376 NTGA----RIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP--SMKLVAELLGHTSRVLYLALSPDGE---- 444 (484)
T ss_pred CCCc----Eecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc--ccceeeeecCCcceeEEEEECCCCC----
Confidence 7543 222222 35678999998652 443 4467889999964 4677889999999999999988754
Q ss_pred CCCceEEEecCCCCcEEEEecc
Q 044557 336 SDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 336 ~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.|++|+.|.++|+|++.
T Consensus 445 -----~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 445 -----TIVTGAADETLRFWNLF 461 (484)
T ss_pred -----EEEEecccCcEEecccc
Confidence 59999999999999994
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=180.38 Aligned_cols=254 Identities=20% Similarity=0.202 Sum_probs=180.7
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSA 84 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~ 84 (362)
|...+.|+.||++.|+++..+ +++++||+.|.++|+||++++....... ...+|..+.++.+ .++..
T Consensus 41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k----------~~~~Vk~~~F~~~gn~~l~ 110 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK----------TNSPVKRVDFSFGGNLILA 110 (327)
T ss_pred CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee----------cCCeeEEEeeccCCcEEEE
Confidence 777899999999999999984 8899999999999999998754221111 1235566665532 23333
Q ss_pred ------ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE
Q 044557 85 ------HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 85 ------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
+.-+.|.++|++............ ..+..+...++.+-|.|-+++|+
T Consensus 111 ~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~---------------------------~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 111 STDKQMGYTCFVSVFDIRDDSSDIDSEEPY---------------------------LKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred EehhhcCcceEEEEEEccCChhhhcccCce---------------------------EEecCCccceeeeeecccCCEEE
Confidence 234678888886433110000001 11122446788899999999999
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~ 237 (362)
+|.+||.|.+||.++++.+......|+..|+.++++++.. +++++.|.+-++||..+-....+. ....||++.+
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty-----~te~PvN~aa 238 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY-----TTERPVNTAA 238 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe-----eeccccccee
Confidence 9999999999999998766555567999999999999997 889999999999999876543332 2356899999
Q ss_pred EecCCCEEEEEcCCCcEEEEeccCCCCcE----------EEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 238 LSCDGSVLYSGACDRSIIVWEKEEDDGNI----------LVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 238 ~s~~~~~l~s~~~d~~i~~wd~~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
++|...+++.||.-...-+=-.....++. ..++.++||-++|.+++++|+ ..+||++||.||+.-.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 99977777766543322121111101100 125567899999999999876 7999999999999864
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-25 Score=190.34 Aligned_cols=269 Identities=23% Similarity=0.358 Sum_probs=200.3
Q ss_pred ccceeeeEecC----cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEE
Q 044557 19 NSYVSSLALAG----KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRV 92 (362)
Q Consensus 19 ~~~V~~l~~~~----~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~ 92 (362)
..+|.+|+|++ +..+|+| -.+.+|+..+... ...+ +-.+..+.++.+-.| -++.|...|.|++
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~--~k~~-------srFk~~v~s~~fR~DG~LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSV--RKTF-------SRFKDVVYSVDFRSDGRLLAAGDESGHVKV 94 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhh--hhhH-------HhhccceeEEEeecCCeEEEccCCcCcEEE
Confidence 46899999975 4555555 5677888654321 1111 112456777777544 3677788899999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCcEEEEEC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~ 171 (362)
+|+.+.. ++ -.+..|+.++..+.|+|++ ..|++|+.|+.+++||+
T Consensus 95 fD~k~r~------------------iL----------------R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 95 FDMKSRV------------------IL----------------RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred eccccHH------------------HH----------------HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 9964310 00 0123688899999999866 57888999999999999
Q ss_pred CCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc
Q 044557 172 SDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
.+......+ .+|++.|.+.+++|... ++||++||+||+||...... .+.. -.|..||..+.+-|.|..++++|
T Consensus 141 s~a~v~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~e-lnhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 141 STAYVQAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVE-LNHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred CCcEEEEEe-cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEE-ecCCCceeeEEEcCCCCEEEEcC
Confidence 988764344 58999999999998764 88999999999999886531 1112 25889999999999999999998
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
. +.|++||+..+.. .+..+..|.+.|+|+.+.. ..|+|||-|+.||+|+. .+++.+..+. -.++|.+++.+
T Consensus 216 G-n~vkVWDl~~G~q---ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~--t~~Kvv~s~~-~~~pvLsiavs 288 (487)
T KOG0310|consen 216 G-NSVKVWDLTTGGQ---LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT--TNYKVVHSWK-YPGPVLSIAVS 288 (487)
T ss_pred C-CeEEEEEecCCce---ehhhhhcccceEEEEEeecCCceEeecccccceEEEEc--cceEEEEeee-cccceeeEEec
Confidence 5 5799999986542 3444555999999999975 48999999999999994 3577777664 67899999998
Q ss_pred ecCCccCCCCCceEEEecCCCCcEEE
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
|+++ .++.|..||.+-+
T Consensus 289 ~dd~---------t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 289 PDDQ---------TVVIGMSNGLVSI 305 (487)
T ss_pred CCCc---------eEEEecccceeee
Confidence 8643 4888888888654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-25 Score=197.52 Aligned_cols=310 Identities=18% Similarity=0.231 Sum_probs=200.9
Q ss_pred eeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc-------------CceeEEEecCC
Q 044557 24 SLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL-------------ADKLFSAHQDH 88 (362)
Q Consensus 24 ~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-------------~~~l~s~~~dg 88 (362)
++.|+ .+.|...=.|..+.|||+...... +.......|...|..+... +.-+.+++.|+
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kv------gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~ 402 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKV------GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDG 402 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccc------cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCC
Confidence 34454 456766778999999998653211 1111222344444433221 12378999999
Q ss_pred cEEEEecCCCCCCcccc------eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 89 KIRVWKINNQEPDHQKY------TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+||+|++..... .+.. ..+...+..++....+... ...+...-......-.-.+++++++|++++||+|..
T Consensus 403 TIRlW~l~~ctn-n~vyrRNils~~l~ki~y~d~~~q~~~d~--~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr 479 (1080)
T KOG1408|consen 403 TIRLWDLAFCTN-NQVYRRNILSANLSKIPYEDSTQQIMHDA--SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDR 479 (1080)
T ss_pred cEEEeecccccc-cceeecccchhhhhcCccccCchhhhhhc--cCCcccccchhhcCcccceEEEEECCCcceecccCc
Confidence 999999975221 1111 0111111111110000000 000011111111122346899999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC---c-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccccee----
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG---D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN---- 234 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~---~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~---- 234 (362)
-|+++||++.+.+..-.+ .+|+..|.|+.|+... + |++++.|+-|.+||+.-. ..+..++.+|...|+
T Consensus 480 ~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---y~l~qtld~HSssITsvKF 555 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---YDLVQTLDGHSSSITSVKF 555 (1080)
T ss_pred cCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---cchhhhhcccccceeEEEE
Confidence 999999999887766555 4899999999998432 3 789999999999997532 223333444444444
Q ss_pred ---------------------------------------------EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEE
Q 044557 235 ---------------------------------------------ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVV 269 (362)
Q Consensus 235 ---------------------------------------------~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 269 (362)
.+++.|.-+++++++.|+.||+|++++++.. ...
T Consensus 556 a~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~-k~F 634 (1080)
T KOG1408|consen 556 ACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV-KSF 634 (1080)
T ss_pred eecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee-eee
Confidence 4455566788899999999999999875432 222
Q ss_pred EeecCccceeEEEEE--eCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 270 GALRGHTKSILCMAV--VSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 270 ~~~~~h~~~v~~~~~--~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
+.-.+|.+....+.. ++.++++...|+++.++|.. .++|++++.||++.|+.+.|.++=+ -|+|.|.
T Consensus 635 Kgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~--sgEcvA~m~GHsE~VTG~kF~nDCk---------HlISvsg 703 (1080)
T KOG1408|consen 635 KGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV--SGECVAQMTGHSEAVTGVKFLNDCK---------HLISVSG 703 (1080)
T ss_pred cccccCCCceEEEEECCCccEEEEeecCCceEEEEec--cchhhhhhcCcchheeeeeecccch---------hheeecC
Confidence 233346555555544 45599999999999999964 4689999999999999999987643 3789999
Q ss_pred CCcEEEEeccc
Q 044557 348 DCDIKVWQISF 358 (362)
Q Consensus 348 D~~i~~W~~~~ 358 (362)
||.|-||+++.
T Consensus 704 DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 DGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECch
Confidence 99999999864
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-25 Score=180.48 Aligned_cols=303 Identities=21% Similarity=0.282 Sum_probs=191.5
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce---eEEEe
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK---LFSAH 85 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---l~s~~ 85 (362)
.+.+|+||.+.|++++|+ |++|||++.|++||+|++..... ....+. -..+.-+.-+.+.+.+|- ++++-
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-~eHr~~----R~nve~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-KEHRCI----RQNVEYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh-hhhhHh----hccccCCCceEEEECCCcceEEEEEc
Confidence 456899999999999994 89999999999999999865321 000000 011122344566666653 56666
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
...++++|.+............ .+ +-... -...|+-.+..+....+++++++++.|..
T Consensus 153 ~g~~l~vyk~~K~~dG~~~~~~---v~-----------------~D~~~--f~~kh~v~~i~iGiA~~~k~imsas~dt~ 210 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGSGSHHF---VH-----------------IDNLE--FERKHQVDIINIGIAGNAKYIMSASLDTK 210 (420)
T ss_pred cCCEEEEEEeeecccCCCCccc---cc-----------------ccccc--cchhcccceEEEeecCCceEEEEecCCCc
Confidence 7788999987543321110000 00 00000 00135566777888888999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCC--cc--eeehhhhccccceeEEEEec
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNK--KH--SLVDVLERHNSGINALALSC 240 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~--~~--~~~~~~~~h~~~v~~i~~s~ 240 (362)
|.+|++. ++.+..+. .....-...+.+|+|+ +++++---.|++|.+--++. .+ .....+++|+..|..++|++
T Consensus 211 i~lw~lk-Gq~L~~id-tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 211 ICLWDLK-GQLLQSID-TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred EEEEecC-Cceeeeec-cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence 9999998 77776654 2223345578999999 45666666799997543221 11 12235678999999999999
Q ss_pred CCCEEEEEcCCCcEEEEeccC-----CCCcEEEEEeecCc--cceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeee
Q 044557 241 DGSVLYSGACDRSIIVWEKEE-----DDGNILVVGALRGH--TKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCL 311 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~-----~~~~~~~~~~~~~h--~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~ 311 (362)
+...+++.|.||.+|+||..- .++.....+...-| ......+..+| +.++ .|....++++..+. ++..
T Consensus 289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA-~s~gs~l~~~~se~--g~~~ 365 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLA-VSFGSDLKVFASED--GKDY 365 (420)
T ss_pred CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEE-eecCCceEEEEccc--Cccc
Confidence 999999999999999999641 11111111111111 11222444444 4444 33345688886432 3333
Q ss_pred eEec-CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 312 AVLE-GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 312 ~~l~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
..++ .|+..|.+++|++++ ++++|++ |.-+|+..
T Consensus 366 ~~~e~~h~~~Is~is~~~~g---------~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 366 PELEDIHSTTISSISYSSDG---------KYIATCG-DRYVRVIR 400 (420)
T ss_pred hhHHHhhcCceeeEEecCCC---------cEEeeec-ceeeeeec
Confidence 3343 699999999997664 5677775 66777754
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-23 Score=173.15 Aligned_cols=284 Identities=19% Similarity=0.312 Sum_probs=198.2
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~ 85 (362)
+..+.|+.-.+.|.+|.|+ |.++++++.|-++++||...+..... +...+-.+..+.+. ...++.++
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t---------i~skkyG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT---------INSKKYGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE---------eecccccccEEEEecCCceEEEcc
Confidence 3445566678899999994 88999999999999999876432111 11111122222222 22333333
Q ss_pred --cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 86 --QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 86 --~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
.|.+||+-++...+. .--+.+|...|.+++.+|-+..+++++.|
T Consensus 76 tk~d~tIryLsl~dNky----------------------------------lRYF~GH~~~V~sL~~sP~~d~FlS~S~D 121 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKY----------------------------------LRYFPGHKKRVNSLSVSPKDDTFLSSSLD 121 (311)
T ss_pred CCCCCceEEEEeecCce----------------------------------EEEcCCCCceEEEEEecCCCCeEEecccC
Confidence 377888888765331 11235799999999999999999999999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCC-CcceeehhhhccccceeEEEEecC
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGN-KKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~-~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
++||+||++..+|..-+.. ..-..++|.|+|.++ ++...+.|++||+..-. ................+.|.||||
T Consensus 122 ~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d 198 (311)
T KOG1446|consen 122 KTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD 198 (311)
T ss_pred CeEEeeEecCCCCceEEec---CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC
Confidence 9999999998888765543 233457899999854 45555599999998653 222222222244667899999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee---EEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecC
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI---LCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v---~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
|++|+.+...+.+++.|.-.+. +...+.++...- ....|.| .++++|+.||+|.+|+.. .+..+..+.|
T Consensus 199 GK~iLlsT~~s~~~~lDAf~G~----~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~--tg~~v~~~~~ 272 (311)
T KOG1446|consen 199 GKSILLSTNASFIYLLDAFDGT----VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE--TGKKVAVLRG 272 (311)
T ss_pred CCEEEEEeCCCcEEEEEccCCc----EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC--CCcEeeEecC
Confidence 9999999999999999987654 344455554332 3445555 499999999999999963 4566778887
Q ss_pred -CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 317 -HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 317 -h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|...+.++.|.|. -.+++|+ |..+-+|=.
T Consensus 273 ~~~~~~~~~~fnP~---------~~mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 273 PNGGPVSCVRFNPR---------YAMFVSA--SSNLVFWLP 302 (311)
T ss_pred CCCCCccccccCCc---------eeeeeec--CceEEEEec
Confidence 8899999887653 2345555 568888843
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-26 Score=202.11 Aligned_cols=275 Identities=23% Similarity=0.388 Sum_probs=197.4
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccce
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYT 106 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 106 (362)
++||+|||.||.||+|++.....+....+ ...+..|...+..+.... +.+++++.|-+|++|+...+.. .
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~---~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-----~ 108 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPY---IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-----F 108 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccch---hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-----h
Confidence 67899999999999999865433211111 011123445555554443 3599999999999999864320 0
Q ss_pred eeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE-ecCCCEEEEEECCCcEEEEECCCceE--EE-----
Q 044557 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL-TKDETLLYSVSWDRTIKIWRTSDFKC--LE----- 178 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~d~~i~iwd~~~~~~--~~----- 178 (362)
+ ..++..|.+-|.|+++ .++...+|+||-|+.|.+||++.+.. +.
T Consensus 109 c---------------------------~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 109 C---------------------------MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred h---------------------------HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc
Confidence 0 0112358899999999 78888999999999999999997622 21
Q ss_pred ---eeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcE
Q 044557 179 ---SITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSI 254 (362)
Q Consensus 179 ---~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i 254 (362)
.+..++...|.+++.++.|. +++|+..+.+++||..+.... ..+.+|...|.++..++||..++++|.||+|
T Consensus 162 t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki----mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtI 237 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI----MKLRGHTDNVRVLLVNDDGTRLLSASSDGTI 237 (735)
T ss_pred ccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce----eeeeccccceEEEEEcCCCCeEeecCCCceE
Confidence 22236788999999999997 788999999999999886543 2456899999999999999999999999999
Q ss_pred EEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc
Q 044557 255 IVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR 332 (362)
Q Consensus 255 ~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~ 332 (362)
++||+..... +.++..|...|.++..+++ .+.+|+.||.|..=++... .++.. +..-..+|..+..+...+
T Consensus 238 rlWdLgqQrC----l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~-~~~tl-ick~daPv~~l~~~~~~~- 310 (735)
T KOG0308|consen 238 RLWDLGQQRC----LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP-AKSTL-ICKEDAPVLKLHLHEHDN- 310 (735)
T ss_pred Eeeeccccce----eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc-hhheE-eecCCCchhhhhhccccC-
Confidence 9999976442 3456779999999888765 7999999999987775432 11111 222334455554432221
Q ss_pred cCCCCCceEEEecCCCCcEEEEecc
Q 044557 333 CDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 333 ~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+ +-++.+|+.|+-|...
T Consensus 311 ------~--~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 311 ------S--VWVTTTDSSIKRWKLE 327 (735)
T ss_pred ------C--ceeeeccccceecCCc
Confidence 1 2356788999999764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=184.30 Aligned_cols=210 Identities=20% Similarity=0.333 Sum_probs=164.8
Q ss_pred eeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC-----------------c-eEEEeeeccCcccEEEEEEc
Q 044557 133 HKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD-----------------F-KCLESITNAHDDAINAVALS 194 (362)
Q Consensus 133 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-----------------~-~~~~~~~~~h~~~v~~v~~~ 194 (362)
++.+.+-.|+.++++.+|+|||.++|+||.|-.|+|.|++. . ..++++. .|.++|+++.|+
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FH 181 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFH 181 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeec
Confidence 34445567999999999999999999999999999999862 0 1244443 689999999999
Q ss_pred CCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec
Q 044557 195 DDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR 273 (362)
Q Consensus 195 ~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 273 (362)
|... |++++.|++||+||......+. ..+.++ ...+|.+|+|+|.|.+|+.|..-.++|+||+.+.+.. .....-.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKr-A~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf-vsanPd~ 258 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKR-AFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF-VSANPDD 258 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHH-HHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEe-eecCccc
Confidence 9887 7899999999999986533221 122222 3458999999999999999999999999999875532 2233456
Q ss_pred CccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEec-CCC-CcEEEEEeeecCCccCCCCCceEEEecCCCC
Q 044557 274 GHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLE-GHR-GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC 349 (362)
Q Consensus 274 ~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~-~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~ 349 (362)
+|++.|.++.+++ .+.+|+|.||.||+||... ..|+.++. +|. +.|.++.|..+ +++|.|.+.|.
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS--~rCv~t~~~AH~gsevcSa~Ftkn---------~kyiLsSG~DS 327 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS--NRCVRTIGNAHGGSEVCSAVFTKN---------GKYILSSGKDS 327 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeecccc--HHHHHHHHhhcCCceeeeEEEccC---------CeEEeecCCcc
Confidence 7999999999975 4899999999999999643 46676654 564 46788877644 46788999999
Q ss_pred cEEEEecc
Q 044557 350 DIKVWQIS 357 (362)
Q Consensus 350 ~i~~W~~~ 357 (362)
++++|++.
T Consensus 328 ~vkLWEi~ 335 (430)
T KOG0640|consen 328 TVKLWEIS 335 (430)
T ss_pred eeeeeeec
Confidence 99999984
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=185.81 Aligned_cols=246 Identities=20% Similarity=0.297 Sum_probs=193.6
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCceeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l~ 82 (362)
+..+.+.+|+||+..|+++.+. ...+++++.|..||||....... ..+...|+++|..+.. .+++++
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---------~~~~~~h~~~V~~ls~h~tgeYll 319 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---------PTSSRPHEEPVTGLSLHPTGEYLL 319 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC---------ccccccccccceeeeeccCCcEEE
Confidence 4567788999999999999996 45799999999999998754331 1223345677776644 578899
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee---cCceeEEEEecCCCEEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH---VDAVSALALTKDETLLYS 159 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s 159 (362)
+++.|++..+.|+..+.. +.. ..+ .-.+++.+|+|||.+|++
T Consensus 320 sAs~d~~w~Fsd~~~g~~-------lt~----------------------------vs~~~s~v~~ts~~fHpDgLifgt 364 (506)
T KOG0289|consen 320 SASNDGTWAFSDISSGSQ-------LTV----------------------------VSDETSDVEYTSAAFHPDGLIFGT 364 (506)
T ss_pred EecCCceEEEEEccCCcE-------EEE----------------------------EeeccccceeEEeeEcCCceEEec
Confidence 999999999998876531 100 011 124789999999999999
Q ss_pred EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 160 VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
|..|+.|+|||+.+...+..+- +|+++|..++|+.+|. +++++.|+.|++||++.....+++. +. ...+|.++.|
T Consensus 365 gt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~--l~-~~~~v~s~~f 440 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ--LD-EKKEVNSLSF 440 (506)
T ss_pred cCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee--cc-ccccceeEEE
Confidence 9999999999999988777775 7999999999999998 8899999999999998765433331 11 2347999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
.+.|.+|+.+|.|=+|++++..+ ..+..+..+..|.+..+++.|... +++++|.|..++++.
T Consensus 441 D~SGt~L~~~g~~l~Vy~~~k~~--k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 441 DQSGTYLGIAGSDLQVYICKKKT--KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred cCCCCeEEeecceeEEEEEeccc--ccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 99999999999988888887554 345556677778888889999754 899999999999875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-24 Score=175.37 Aligned_cols=265 Identities=18% Similarity=0.267 Sum_probs=189.3
Q ss_pred ccCccceeeeEecC---cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcE
Q 044557 16 KGHNSYVSSLALAG---KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKI 90 (362)
Q Consensus 16 ~gH~~~V~~l~~~~---~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i 90 (362)
..-.+.|.+|+|+. .+++.+|+|++||+|+++...... + +.+..+.+++.++.++.+ ++++++.|+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-----~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-----P--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCccc-----c--hhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence 34578999999974 467799999999999987531111 0 122335788989988765 59999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC--EEEEEECCCcEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET--LLYSVSWDRTIKI 168 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~i 168 (362)
++||+..+.. ..+..|.++|.++.|-+... +|+|||+|++|+.
T Consensus 97 k~wDL~S~Q~-----------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf 141 (347)
T KOG0647|consen 97 KLWDLASGQV-----------------------------------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKF 141 (347)
T ss_pred EEEEccCCCe-----------------------------------eeeeecccceeEEEEecCCCcceeEecccccceee
Confidence 9999986531 12245889999998876554 8999999999999
Q ss_pred EECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE
Q 044557 169 WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 169 wd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
||++....+.++..+. .+.++..- ...++.+..++.|.+|+++.+....+.+. ..-+-.+.+|++.+|....+.|
T Consensus 142 WD~R~~~pv~t~~LPe--RvYa~Dv~-~pm~vVata~r~i~vynL~n~~te~k~~~--SpLk~Q~R~va~f~d~~~~alG 216 (347)
T KOG0647|consen 142 WDTRSSNPVATLQLPE--RVYAADVL-YPMAVVATAERHIAVYNLENPPTEFKRIE--SPLKWQTRCVACFQDKDGFALG 216 (347)
T ss_pred cccCCCCeeeeeeccc--eeeehhcc-CceeEEEecCCcEEEEEcCCCcchhhhhc--CcccceeeEEEEEecCCceEee
Confidence 9999988888776543 33333221 12356788899999999976643222211 1123457899999999888999
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCcc---------ceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHT---------KSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
+-.|.+-+..+..+... .--.++.|. -.|.+++|.+. .|+|++.||++.+||-..+ ..+++.+-|
T Consensus 217 siEGrv~iq~id~~~~~--~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar--~kLk~s~~~ 292 (347)
T KOG0647|consen 217 SIEGRVAIQYIDDPNPK--DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR--TKLKTSETH 292 (347)
T ss_pred eecceEEEEecCCCCcc--CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh--hhhhccCcC
Confidence 99999999888764221 111233343 23567788764 7999999999999994322 336677789
Q ss_pred CCcEEEEEeeecCC
Q 044557 318 RGPVKCLAAAIDND 331 (362)
Q Consensus 318 ~~~v~~~~~~~~~~ 331 (362)
..+|++..|+.++.
T Consensus 293 ~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 293 PQPITCCSFNRNGS 306 (347)
T ss_pred CCccceeEecCCCC
Confidence 99999999976554
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=198.38 Aligned_cols=237 Identities=24% Similarity=0.414 Sum_probs=187.5
Q ss_pred eEEeecceeEEEEEcCce-eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 63 IVAVGKGAVKSLVVLADK-LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 63 ~~~~~~~~v~~i~~~~~~-l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
.+..|...|..+....+. +++++.||++++|+-...+... ...+.+|
T Consensus 9 ~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~--------------------------------~~~~~~~ 56 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE--------------------------------THAFEGP 56 (745)
T ss_pred EeccCccchheeEecCCeEEeecCCCCceeeeeccCccccc--------------------------------ceecccC
Confidence 344566677777665554 8899999999999864332100 0112234
Q ss_pred cCceeE-EEEec-CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCc
Q 044557 142 VDAVSA-LALTK-DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 142 ~~~v~~-~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~ 219 (362)
.+-|.+ +++.+ +.-.+++|+.|.+|.+|...+..++..+. +|...|.++....++.+++|+.|.++++|-...
T Consensus 57 ~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~---- 131 (745)
T KOG0301|consen 57 KGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE---- 131 (745)
T ss_pred cceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh-ccccceeeeecCCcCceEecccccceEEecchh----
Confidence 444444 66664 34458999999999999999998888775 899999999988888899999999999996532
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcE
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTI 298 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i 298 (362)
+...+++|+.+|.++..-|++ .++|||.|.+|++|.-.. .+.++.||++.|+.+++-++ .++|++-||.|
T Consensus 132 --l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~------~l~tf~gHtD~VRgL~vl~~~~flScsNDg~I 202 (745)
T KOG0301|consen 132 --LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT------LLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSI 202 (745)
T ss_pred --hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc------hhhhhccchhheeeeEEecCCCeEeecCCceE
Confidence 344578999999999999987 889999999999996532 46678999999999998766 89999999999
Q ss_pred EEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 299 RIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|+|+. .+.++..+.||++-|.+++..++. ..|+|+|.|+++|||+..
T Consensus 203 r~w~~---~ge~l~~~~ghtn~vYsis~~~~~---------~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 203 RLWDL---DGEVLLEMHGHTNFVYSISMALSD---------GLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEec---cCceeeeeeccceEEEEEEecCCC---------CeEEEecCCceEEEeecC
Confidence 99995 356788999999999999854332 368999999999999863
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=183.50 Aligned_cols=292 Identities=24% Similarity=0.386 Sum_probs=212.6
Q ss_pred eeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcc---cce------eeeccceeE-EeecceeEEEEEcCc
Q 044557 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSE---LDQ------EFLSNNNIV-AVGKGAVKSLVVLAD 79 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~---~~~------~~~~~~~~~-~~~~~~v~~i~~~~~ 79 (362)
+..+..|.-+|.++.++ .++.++++.||+|--|++.+.... ++. .+.. .... ..|...+.++++++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~-~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNP-LKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCC-CCcccccccceeEEEEEcCC
Confidence 56678999999999995 679999999999999998764311 111 0000 0000 245567778887765
Q ss_pred --eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 80 --KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 80 --~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
+|++++.|..|.+|+.++.+.. +.+.+|.+.|.+++|-.....|
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv----------------------------------~~~~ghr~~V~~L~fr~gt~~l 259 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHV----------------------------------KVFKGHRGAVSSLAFRKGTSEL 259 (479)
T ss_pred CcEEEecCCCceEEEecCcccchh----------------------------------hcccccccceeeeeeecCccce
Confidence 5999999999999998765421 1234799999999998888889
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEE-EeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYT-GSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
++++.|+.|++|+++....+.++. +|.+.|.++....-+++++ |+.|+++++|++.... ++ .+.+|...+-|+
T Consensus 260 ys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---ql--ifrg~~~sidcv 333 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQLSYVETLY-GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---QL--IFRGGEGSIDCV 333 (479)
T ss_pred eeeecCCceEEEehhHhHHHHHHh-CCccceeeechhcccceEEeccccceeEEEeccccc---ee--eeeCCCCCeeeE
Confidence 999999999999999887777664 8999999998877777776 4599999999994432 22 234677788898
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec----------CccceeEEEEEe--CCeEEEeeCCCcEEEeeCC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR----------GHTKSILCMAVV--SDLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~----------~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~ 304 (362)
+|- +..++++||.||.|.+|++....+ +. +.... .+.-.|++++.. .+++++||.+|+||+|...
T Consensus 334 ~~I-n~~HfvsGSdnG~IaLWs~~KKkp-lf-~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 334 AFI-NDEHFVSGSDNGSIALWSLLKKKP-LF-TSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred EEe-cccceeeccCCceEEEeeecccCc-ee-EeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 886 457889999999999999875332 21 11111 112267777765 4699999999999999875
Q ss_pred CC--ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 305 DR--NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 305 ~~--~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.. ...++..+. -.+.|++++|++++. ++++..+....+--|-.
T Consensus 411 ~g~r~i~~l~~ls-~~GfVNsl~f~~sgk--------~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 411 DGLRAINLLYSLS-LVGFVNSLAFSNSGK--------RIVAGIGKEHRLGRWWC 455 (479)
T ss_pred CCccccceeeecc-cccEEEEEEEccCCC--------EEEEecccccccceeeE
Confidence 42 345555554 677899999987654 35666666666555543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-24 Score=191.20 Aligned_cols=341 Identities=23% Similarity=0.315 Sum_probs=228.7
Q ss_pred cceeeecccCccceeeeEec---C--cEEEEecCCCeEEEeecCCCC--cccce-----------eeec---------cc
Q 044557 9 HHCLTTLKGHNSYVSSLALA---G--KFLYTGSSDNEVRSWDCNTFS--SELDQ-----------EFLS---------NN 61 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~---~--~~l~t~s~Dg~i~vWd~~~~~--~~~~~-----------~~~~---------~~ 61 (362)
++....|+||.+.|.+|+|. + -+|||+|.|..||||.+.... .+... .+.. ..
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 45777899999999999993 2 379999999999999874321 00000 0000 01
Q ss_pred eeEEeecceeEEEEEcCce--eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhh-hhccccc----------cc
Q 044557 62 NIVAVGKGAVKSLVVLADK--LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAI-KLLMPKN----------HV 128 (362)
Q Consensus 62 ~~~~~~~~~v~~i~~~~~~--l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~ 128 (362)
.++..|+..|.++.+.+.+ |+++++|.++-+|........-....++........... .++.+.. ..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 1223467788888887765 999999999999986543221111112221110000000 1122222 12
Q ss_pred eeeeeee-------eEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC----------------------------
Q 044557 129 QIRRHKT-------CTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD---------------------------- 173 (362)
Q Consensus 129 ~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~---------------------------- 173 (362)
..++.+. ....+|.+.|..++|+|.|.+|.++|.|.+-|++-.-.
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 2333111 22457999999999999999999999999998873210
Q ss_pred -------ceEEEee------------------------------------------------------------------
Q 044557 174 -------FKCLESI------------------------------------------------------------------ 180 (362)
Q Consensus 174 -------~~~~~~~------------------------------------------------------------------ 180 (362)
.+.++.+
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 0000000
Q ss_pred --------------------eccCcccEEEEEEcCCCcE-EEEeC-----CCeEEEEeCCCCCCcceeehhhhcccccee
Q 044557 181 --------------------TNAHDDAINAVALSDDGDV-YTGSA-----DKKIKVWRRSPGNKKHSLVDVLERHNSGIN 234 (362)
Q Consensus 181 --------------------~~~h~~~v~~v~~~~~~~~-~s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~ 234 (362)
..+|...|.+++.+|++.+ +|++. .-.|++|+..+.... ..+..|...|+
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~----~~L~~HsLTVT 576 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV----QELEGHSLTVT 576 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh----heecccceEEE
Confidence 0157778999999999984 44432 346899988766433 24678999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeee
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
.++|||||++|++.|.|+++.+|...............+.|+.=|.+..|+++ +++|+|.|++|++|...+..-+++.
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~ 656 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS 656 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhh
Confidence 99999999999999999999999986544333334457789988899999876 6999999999999986443222232
Q ss_pred --EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 313 --VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 313 --~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
....+..+|+++++.|.. -+..+..++.|=.-|.|.||...
T Consensus 657 ~~a~~~~~~aVTAv~~~~~~----~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 657 RFACLKFSLAVTAVAYLPVD----HNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhchhccCCceeeEEeeccc----cccccceEEEEecccEEEEEecc
Confidence 244689999999998752 23445678899999999999965
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.5e-24 Score=173.33 Aligned_cols=260 Identities=16% Similarity=0.250 Sum_probs=188.8
Q ss_pred ccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCCcEEEEec
Q 044557 19 NSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDHKIRVWKI 95 (362)
Q Consensus 19 ~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg~i~~w~~ 95 (362)
.+.|++|.|+ ++.|+.+++||++|+||+...+ +...+ .+.+++.+..+.++ .+++|+.||.|+.+|+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~--------~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKF--------KHGAPLLDCAFADESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhhe--------ecCCceeeeeccCCceEEEeccCceEEEEEe
Confidence 6789999996 5567777799999999987642 22222 24567777776654 5999999999999999
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK 175 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 175 (362)
+.+.. ..+..|.+.|+|+.+.+....+++||+|++|++||.+...
T Consensus 83 n~~~~-----------------------------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 83 NTGNE-----------------------------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred cCCcc-----------------------------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 86542 1123588999999999999999999999999999998755
Q ss_pred EEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEE
Q 044557 176 CLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 176 ~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
....+.. ...|.++... +..|+.|+.|..|.+||+.+...... .....-+-.+.+|++-|++.-.+.++-||+|.
T Consensus 128 ~~~~~d~--~kkVy~~~v~-g~~LvVg~~~r~v~iyDLRn~~~~~q--~reS~lkyqtR~v~~~pn~eGy~~sSieGRVa 202 (323)
T KOG1036|consen 128 VVGTFDQ--GKKVYCMDVS-GNRLVVGTSDRKVLIYDLRNLDEPFQ--RRESSLKYQTRCVALVPNGEGYVVSSIEGRVA 202 (323)
T ss_pred ccccccc--CceEEEEecc-CCEEEEeecCceEEEEEcccccchhh--hccccceeEEEEEEEecCCCceEEEeecceEE
Confidence 5554432 3377777665 34588999999999999986542211 11112345689999999999999999999987
Q ss_pred EEeccCCCCcEEEEEeecCccc---------eeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEE
Q 044557 256 VWEKEEDDGNILVVGALRGHTK---------SILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324 (362)
Q Consensus 256 ~wd~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~ 324 (362)
+=.++..+.....-..++.|.. +|.+++|++- .++||+.||.|.+||...+ +.+..|.+-...|..+
T Consensus 203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r--Krl~q~~~~~~SI~sl 280 (323)
T KOG1036|consen 203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR--KRLKQLAKYETSISSL 280 (323)
T ss_pred EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch--hhhhhccCCCCceEEE
Confidence 7555433111111223444532 5788889864 7999999999999997543 3466676667789999
Q ss_pred EeeecC
Q 044557 325 AAAIDN 330 (362)
Q Consensus 325 ~~~~~~ 330 (362)
+|+.++
T Consensus 281 sfs~dG 286 (323)
T KOG1036|consen 281 SFSMDG 286 (323)
T ss_pred EeccCC
Confidence 997654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=159.49 Aligned_cols=309 Identities=18% Similarity=0.219 Sum_probs=216.7
Q ss_pred cceeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccc-eee-ecccee----EEeecceeEEEE
Q 044557 4 LSVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELD-QEF-LSNNNI----VAVGKGAVKSLV 75 (362)
Q Consensus 4 ~~~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~-~~~-~~~~~~----~~~~~~~v~~i~ 75 (362)
.|.+-+.++.+|+. +..|.+++|. |.+.+.||...+.|+--......... .+. .....+ -..|++.+.|..
T Consensus 18 ~~k~~f~~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 18 KEKKHFEAINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred ccccceEEEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence 34555667776665 6779999994 78999999999999875432110000 000 000111 134678899999
Q ss_pred EcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-
Q 044557 76 VLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK- 152 (362)
Q Consensus 76 ~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~- 152 (362)
+++. .+++++.|.+|++...+..... . .....++.-|.+.|+.++|-.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~-------~----------------------~g~dle~nmhdgtirdl~fld~ 147 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCN-------A----------------------TGHDLEFNMHDGTIRDLAFLDD 147 (350)
T ss_pred ecCccCeEEecCCCceEEEEeccccccc-------c----------------------cCcceeeeecCCceeeeEEecC
Confidence 8865 4889999999999876542210 0 001123345889999999943
Q ss_pred ---CCCEEEEEE-CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCCCCCcceeehhhh
Q 044557 153 ---DETLLYSVS-WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLE 227 (362)
Q Consensus 153 ---~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 227 (362)
.+.+|++++ .|-.|.+-|...++.++.+. +|++-|.++ ++-+| .+++|+.|.+|+.||+.-......+-..+.
T Consensus 148 ~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~ 225 (350)
T KOG0641|consen 148 PESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH 225 (350)
T ss_pred CCcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCccc
Confidence 345777754 56677777888888888775 899988776 34445 488999999999999875543333322222
Q ss_pred c---cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 228 R---HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 228 ~---h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
. ....|.++++.|.|+.|++|-.|....+||++.++ .+..+.-|...|.|+.|++. +++++|.|..||+=|
T Consensus 226 ~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r----~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR----MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc----eeeeeCCCccceeEEEeCCCceEEEEecccceEEEee
Confidence 2 13679999999999999999999999999998644 34556779999999999986 899999999999998
Q ss_pred CCCCc--eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GIDRN--YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+...- .-++-..-.|++.+..+.|+|... -++|.|.|.++.+|-+.
T Consensus 302 lqgdla~el~~~vv~ehkdk~i~~rwh~~d~---------sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 302 LQGDLAHELPIMVVAEHKDKAIQCRWHPQDF---------SFISSSADKTATLWALN 349 (350)
T ss_pred cccchhhcCceEEEEeccCceEEEEecCccc---------eeeeccCcceEEEeccC
Confidence 53211 111223346888888888877543 36799999999999874
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=191.92 Aligned_cols=236 Identities=28% Similarity=0.357 Sum_probs=190.1
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEe-ecceeEEEEEcCceeEEEecCCcEEEEe
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAV-GKGAVKSLVVLADKLFSAHQDHKIRVWK 94 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~l~s~~~dg~i~~w~ 94 (362)
+...|+++.++ |.+|+.|..+|+|.|||.+...... . +.. |...|.++.+....+.+|+.|+.|..+|
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~--~-------~~~~h~~rvg~laW~~~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR--T-------LRGSHASRVGSLAWNSSVLSSGSRDGKILNHD 286 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc--c-------ccCCcCceeEEEeccCceEEEecCCCcEEEEE
Confidence 37899999995 8999999999999999976532111 1 112 5678899999988899999999999999
Q ss_pred cCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCc
Q 044557 95 INNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF 174 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 174 (362)
++..+.... ...+|...|-.++|++|+++||+|+.|+.+.|||....
T Consensus 287 vR~~~~~~~---------------------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 287 VRISQHVVS---------------------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred Eecchhhhh---------------------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 875431100 13478999999999999999999999999999999777
Q ss_pred eEEEeeeccCcccEEEEEEcCCC--cEEEE--eCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE--
Q 044557 175 KCLESITNAHDDAINAVALSDDG--DVYTG--SADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG-- 248 (362)
Q Consensus 175 ~~~~~~~~~h~~~v~~v~~~~~~--~~~s~--~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-- 248 (362)
+.+..+. .|..+|..++|+|-. .||+| +.|+.|++||..++.....+ .-...|..|.|++..+.|+++
T Consensus 334 ~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-----dtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 334 EPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-----DTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred cccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-----ccCCceeeEEEcCCCCEEEEecC
Confidence 7777665 799999999999854 47764 57999999999887644332 235679999999988766654
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~ 305 (362)
-.++.|.+|+..+ +..+..+.+|..+|..++++++ .+++|+.|.++|+|++..
T Consensus 408 ~s~n~i~lw~~ps----~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 408 YSENQITLWKYPS----MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCCcEEEEeccc----cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 3577899999875 3356778999999999999876 899999999999999765
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=193.63 Aligned_cols=332 Identities=19% Similarity=0.300 Sum_probs=226.5
Q ss_pred eeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEE---EcCceeEEEecC
Q 044557 11 CLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLV---VLADKLFSAHQD 87 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~---~~~~~l~s~~~d 87 (362)
..+++.+|.+.|.-+...|.+++++..++.+.+|+......+. +.. ..+.......+.++. .+-++++.|+.+
T Consensus 106 i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~---~l~-~~~~~~~~~~Ital~HP~TYLNKIvvGs~~ 181 (910)
T KOG1539|consen 106 IRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL---YLQ-STFLKVEGDFITALLHPSTYLNKIVVGSSQ 181 (910)
T ss_pred EEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccc---ccc-ceeeeccCCceeeEecchhheeeEEEeecC
Confidence 3457788999999999999999999999999999976532111 100 011111122255543 344779999999
Q ss_pred CcEEEEecCCCCCCcc------cceeeeeccCCCchhhhhcccccccee---eeeeeeEEeeec-CceeEEEEecCCC-E
Q 044557 88 HKIRVWKINNQEPDHQ------KYTRLATLPTLGDRAIKLLMPKNHVQI---RRHKTCTWVHHV-DAVSALALTKDET-L 156 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~-~~v~~~~~~~~~~-~ 156 (362)
|.+++|+++.+...+. .++.+...|..+ ++.+....+.+.+ +..+...-..|. ++|++++|.-||+ .
T Consensus 182 G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~ 259 (910)
T KOG1539|consen 182 GRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPL 259 (910)
T ss_pred CcEEEEEeccCcEEEEecccccceeEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCee
Confidence 9999999987764321 222222222221 1112222333333 333433344564 8999999998886 6
Q ss_pred EEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 157 LYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 157 l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
+|+|+..|.+.+||++..+.+..+...|.+.|....|.|... +++++.|+..++|-.+++.....+.....+|..|..+
T Consensus 260 las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ 339 (910)
T KOG1539|consen 260 LASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC 339 (910)
T ss_pred EEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchh
Confidence 778888899999999999988888889999999999998776 7789999999999777655444555555677777777
Q ss_pred EEEe-cCCCEEEEEcCCCcEEEEec-------------------------------------------------------
Q 044557 236 LALS-CDGSVLYSGACDRSIIVWEK------------------------------------------------------- 259 (362)
Q Consensus 236 i~~s-~~~~~l~s~~~d~~i~~wd~------------------------------------------------------- 259 (362)
|.|. .+|.++.+++.|++.+.+++
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK 419 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEec
Confidence 7776 56777777777777766652
Q ss_pred ----------------------------------------------------------cCCCCcEEEEEeecCccceeEE
Q 044557 260 ----------------------------------------------------------EEDDGNILVVGALRGHTKSILC 281 (362)
Q Consensus 260 ----------------------------------------------------------~~~~~~~~~~~~~~~h~~~v~~ 281 (362)
+++-... ..+.-+.|...|+.
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~-sf~~~~ah~~~V~g 498 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRK-SFGDSPAHKGEVTG 498 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeec-ccccCccccCceeE
Confidence 1110000 00011247778888
Q ss_pred EEEeC--CeEEEeeCCCcEEEeeCCCCc---------------------------------------eeeeeEecCCCCc
Q 044557 282 MAVVS--DLVCSGSADKTIRIWRGIDRN---------------------------------------YTCLAVLEGHRGP 320 (362)
Q Consensus 282 ~~~~~--~~~~s~s~D~~i~~W~~~~~~---------------------------------------~~~~~~l~~h~~~ 320 (362)
++.++ ..++|++.||.+++|+..... .+.+..+.||.+.
T Consensus 499 la~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr 578 (910)
T KOG1539|consen 499 LAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR 578 (910)
T ss_pred EEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc
Confidence 88764 479999999999999854221 0112236899999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|+++.|+|++ ++|++++.|++||+||+..
T Consensus 579 itd~~FS~Dg---------rWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 579 ITDMTFSPDG---------RWLISASMDSTIRTWDLPT 607 (910)
T ss_pred eeeeEeCCCC---------cEEEEeecCCcEEEEeccC
Confidence 9999998764 6899999999999999964
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-24 Score=183.64 Aligned_cols=237 Identities=20% Similarity=0.379 Sum_probs=181.0
Q ss_pred eecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc---eeEEEecC
Q 044557 13 TTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD---KLFSAHQD 87 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~l~s~~~d 87 (362)
+++.-..+.|.++.| +|++++.|+..|.|+++|.++ .... ..+..|..++..+.+.+. .+.+|+.|
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iL-------R~~~ah~apv~~~~f~~~d~t~l~s~sDd 132 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVIL-------RQLYAHQAPVHVTKFSPQDNTMLVSGSDD 132 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--HHHH-------HHHhhccCceeEEEecccCCeEEEecCCC
Confidence 345567788999999 599999999999999999543 1111 111234556666655432 37788999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEEECCCcE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSVSWDRTI 166 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i 166 (362)
+.+++||+.+.. ....+.+|++-|+|.+++|... +++|||.||+|
T Consensus 133 ~v~k~~d~s~a~----------------------------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 133 KVVKYWDLSTAY----------------------------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred ceEEEEEcCCcE----------------------------------EEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 999999986532 0123457999999999998655 89999999999
Q ss_pred EEEECCCc-eEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 167 KIWRTSDF-KCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 167 ~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
|+||++.. ..+.++ .|..+|..+.+-|.|.+++.+....||+||+.++.. ++..+..|...|+|+++..++..|
T Consensus 179 rl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~q---ll~~~~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQ---LLTSMFNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred EEEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCce---ehhhhhcccceEEEEEeecCCceE
Confidence 99999876 444444 588999999999998766555667999999987753 344455599999999999999999
Q ss_pred EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEee
Q 044557 246 YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWR 302 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~ 302 (362)
++||.|+.|++||..+ ...+..++ -.++|.+++.++ ..++.|-.||.+-+=+
T Consensus 254 lS~sLD~~VKVfd~t~----~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 254 LSGSLDRHVKVFDTTN----YKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred eecccccceEEEEccc----eEEEEeee-cccceeeEEecCCCceEEEecccceeeeeh
Confidence 9999999999999643 34555554 367899999987 4889999999876553
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=188.10 Aligned_cols=330 Identities=19% Similarity=0.234 Sum_probs=216.5
Q ss_pred eeeecccCccceeeeEec--Cc---EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe
Q 044557 11 CLTTLKGHNSYVSSLALA--GK---FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH 85 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~---~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~ 85 (362)
...+|.||.++|+|+.+- ++ +++||+.|++|++|.++.........+. .+...+.++......+...+
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~-------g~~~~~~cv~a~~~~~~~~~ 118 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ-------GHCKECVCVVARSSVMTCKA 118 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec-------CcceeEEEEEeeeeEEEeec
Confidence 456799999999999983 33 7999999999999998621111111110 11222333222222222337
Q ss_pred cCCcEEEEecCCCCCC---cccc-------eeeeeccCCCchhhhhcccccccee------eeeeeeEEeeecCceeEEE
Q 044557 86 QDHKIRVWKINNQEPD---HQKY-------TRLATLPTLGDRAIKLLMPKNHVQI------RRHKTCTWVHHVDAVSALA 149 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~v~~~~ 149 (362)
.|+++++|+.+..+.- ..++ .++..++..+.....+......+.+ .-.+...+.+|.+.|.+++
T Consensus 119 ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~ 198 (764)
T KOG1063|consen 119 ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLA 198 (764)
T ss_pred cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhh
Confidence 8999999998543310 0001 1122222100000000000000111 1134556779999999999
Q ss_pred EecCC---CEEEEEECCCcEEEEECCCce---------------------EE---E------eeeccCcccEEEEEEcCC
Q 044557 150 LTKDE---TLLYSVSWDRTIKIWRTSDFK---------------------CL---E------SITNAHDDAINAVALSDD 196 (362)
Q Consensus 150 ~~~~~---~~l~s~s~d~~i~iwd~~~~~---------------------~~---~------~~~~~h~~~v~~v~~~~~ 196 (362)
|...+ -+||++|+|..||||.+.-+. .+ . .+..+|++.|.++.|+|.
T Consensus 199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~ 278 (764)
T KOG1063|consen 199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE 278 (764)
T ss_pred hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc
Confidence 97644 489999999999999763211 11 1 234589999999999999
Q ss_pred C-cEEEEeCCCeEEEEeCCCCCCccee---ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEee
Q 044557 197 G-DVYTGSADKKIKVWRRSPGNKKHSL---VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGAL 272 (362)
Q Consensus 197 ~-~~~s~~~dg~i~iw~~~~~~~~~~~---~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 272 (362)
+ .|++++.|+++.+|..++....-.. ...+.+...+.....|+|++..+++-|.-|-.++|...+ ..........
T Consensus 279 ~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d-~~~w~~~~~i 357 (764)
T KOG1063|consen 279 GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD-KTFWTQEPVI 357 (764)
T ss_pred hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC-ccceeecccc
Confidence 9 5999999999999987653221111 122223345678899999999999999999999998332 3344455567
Q ss_pred cCccceeEEEEEe--CCeEEEeeCCCcEEEeeCC--CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCC
Q 044557 273 RGHTKSILCMAVV--SDLVCSGSADKTIRIWRGI--DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD 348 (362)
Q Consensus 273 ~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~--~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D 348 (362)
.||.+.|..++|. +++++|+|.|.+-|++--. ...+..++.-+-|.-..+|++|.++. ..++||.++
T Consensus 358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~---------~~FVSgAdE 428 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED---------LQFVSGADE 428 (764)
T ss_pred ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC---------ceeeecccc
Confidence 8999999999997 5699999999999999532 23345555555677789999998642 247899999
Q ss_pred CcEEEEecc
Q 044557 349 CDIKVWQIS 357 (362)
Q Consensus 349 ~~i~~W~~~ 357 (362)
..+|+++.+
T Consensus 429 KVlRvF~aP 437 (764)
T KOG1063|consen 429 KVLRVFEAP 437 (764)
T ss_pred eeeeeecCc
Confidence 999999875
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=187.76 Aligned_cols=271 Identities=21% Similarity=0.257 Sum_probs=185.7
Q ss_pred EEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe
Q 044557 72 KSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT 151 (362)
Q Consensus 72 ~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 151 (362)
.||.++.+.++.|+.+|.|++|+-.+-+. +.++|.......... +..+........-........++.|+
T Consensus 264 nCIcVs~r~I~cgCa~g~vrlFnp~tL~y-------~~Tlpr~halg~d~a---~~~q~~~~~s~~~~a~fPD~IA~~Fd 333 (1080)
T KOG1408|consen 264 NCICVSSRLIACGCAKGMVRLFNPETLDY-------AGTLPRSHALGSDTA---NLSQPEPKNSESSPAIFPDAIACQFD 333 (1080)
T ss_pred ceeeeecceEEEeeccceeeecCcchhhh-------ccccccccccccchh---hcccccccccccCcccCCceeEEEec
Confidence 35667778899999999999998654331 122222110000000 00000000000000111234567899
Q ss_pred cCCCEEEEEECCCcEEEEECCCceEEEee--eccCcccEEEEEEcC------------CCcEEEEeCCCeEEEEeCCCCC
Q 044557 152 KDETLLYSVSWDRTIKIWRTSDFKCLESI--TNAHDDAINAVALSD------------DGDVYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~h~~~v~~v~~~~------------~~~~~s~~~dg~i~iw~~~~~~ 217 (362)
|....|.+.-.|..++|||+++.+.+.+. ..-|...|++|..-| .+-|.+++.|++||+|+++...
T Consensus 334 et~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct 413 (1080)
T KOG1408|consen 334 ETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT 413 (1080)
T ss_pred CCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc
Confidence 99999999999999999999875432211 124788888876533 3458899999999999987632
Q ss_pred Cccee------------e---------------------hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC
Q 044557 218 KKHSL------------V---------------------DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG 264 (362)
Q Consensus 218 ~~~~~------------~---------------------~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~ 264 (362)
....+ + ...-....++.+++++|+|++|++|..-|++|+|++.+.+
T Consensus 414 nn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~- 492 (1080)
T KOG1408|consen 414 NNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE- 492 (1080)
T ss_pred ccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-
Confidence 21110 0 0001234578999999999999999999999999998643
Q ss_pred cEEEEEeecCccceeEEEEEeCC-----eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCcc------
Q 044557 265 NILVVGALRGHTKSILCMAVVSD-----LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRC------ 333 (362)
Q Consensus 265 ~~~~~~~~~~h~~~v~~~~~~~~-----~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~------ 333 (362)
.+-.++.|...|+|+.|+.. +|+++|.|+-|.++|. .+++.++++|.+|++.|+++.|.-++.+.
T Consensus 493 ---~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv-~rny~l~qtld~HSssITsvKFa~~gln~~MiscG 568 (1080)
T KOG1408|consen 493 ---YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV-KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG 568 (1080)
T ss_pred ---hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec-ccccchhhhhcccccceeEEEEeecCCceEEEecc
Confidence 33456789999999999742 7999999999999996 57888999999999999999998765210
Q ss_pred ----------------------------------CCCCCceEEEecCCCCcEEEEecc
Q 044557 334 ----------------------------------DSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 334 ----------------------------------~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+..++.+++++++.|..|||+++.
T Consensus 569 ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~ 626 (1080)
T KOG1408|consen 569 ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE 626 (1080)
T ss_pred CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc
Confidence 011345789999999999999985
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=174.44 Aligned_cols=309 Identities=23% Similarity=0.328 Sum_probs=213.4
Q ss_pred eecccC-ccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCCc
Q 044557 13 TTLKGH-NSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDHK 89 (362)
Q Consensus 13 ~tl~gH-~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg~ 89 (362)
..++++ ...|.|+.|. +.-++||+++|+|.||+..+.. . ...+ ..|.+.|.++....+ .|++|+.|+.
T Consensus 239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~--~------~k~~-~aH~ggv~~L~~lr~GtllSGgKDRk 309 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNR--I------SKQV-HAHDGGVFSLCMLRDGTLLSGGKDRK 309 (626)
T ss_pred eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCce--E------EeEe-eecCCceEEEEEecCccEeecCccce
Confidence 345554 3678999995 5679999999999999864321 1 0112 267888999877765 5999999999
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhh-------hccccccce-----eeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIK-------LLMPKNHVQ-----IRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
|..||-+..... -..+|...+.+.. ++....+.. +.+.-..+.++|.+....++.+|+.+.+
T Consensus 310 i~~Wd~~y~k~r------~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~ 383 (626)
T KOG2106|consen 310 IILWDDNYRKLR------ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQL 383 (626)
T ss_pred EEeccccccccc------cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhhe
Confidence 999983221110 0111111111111 111211111 1222334567899999999999999999
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEE
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~ 237 (362)
++++.|+.+++|+ ..+.+- ...-.+++.++.|.|.|.++.|...|.-.+.|.++.. ++..... +.++++++
T Consensus 384 ~T~gqdk~v~lW~--~~k~~w--t~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~----lv~~~~d-~~~ls~v~ 454 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHKLEW--TKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD----LVTIHTD-NEQLSVVR 454 (626)
T ss_pred eeccCcceEEEcc--CCceeE--EEEecCceeEeeccCcceEEEeeccceEEEEecccce----eEEEEec-CCceEEEE
Confidence 9999999999999 333332 2234678899999999988999999999999987743 2222222 77899999
Q ss_pred EecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC----------
Q 044557 238 LSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID---------- 305 (362)
Q Consensus 238 ~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~---------- 305 (362)
|+|+|.+||.|+.|+.|++|-+..+.......+...+ ..|+.+.|+.+ ++.+-|.|-.|..|+...
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDv 532 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDV 532 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecce
Confidence 9999999999999999999998776655555555544 67777877654 778888887777774210
Q ss_pred ---------------------------------------------------CceeeeeEecCCCCcEEEEEeeecCCccC
Q 044557 306 ---------------------------------------------------RNYTCLAVLEGHRGPVKCLAAAIDNDRCD 334 (362)
Q Consensus 306 ---------------------------------------------------~~~~~~~~l~~h~~~v~~~~~~~~~~~~~ 334 (362)
..-...+.+.+|++-|.+++|..+.
T Consensus 533 kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d---- 608 (626)
T KOG2106|consen 533 KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKD---- 608 (626)
T ss_pred eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCC----
Confidence 0011234578999999999997543
Q ss_pred CCCCceEEEecCCCCcEEEEec
Q 044557 335 SSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 335 ~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
..++.+| .|..|..|++
T Consensus 609 ----~~li~tg-~D~Si~qW~l 625 (626)
T KOG2106|consen 609 ----SHLISTG-KDTSIMQWRL 625 (626)
T ss_pred ----ceEEecC-CCceEEEEEe
Confidence 2345444 9999999986
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-24 Score=196.92 Aligned_cols=200 Identities=17% Similarity=0.243 Sum_probs=153.8
Q ss_pred EEe-eecCceeEEEEecCCCEEEEEECCCcEEEEECCCce----------------------------E-----------
Q 044557 137 TWV-HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK----------------------------C----------- 176 (362)
Q Consensus 137 ~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----------------------------~----------- 176 (362)
... .|.+.|.++.|++||+|||+||+|+.|+||.+..-+ .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 799999999999999999999999999999864400 0
Q ss_pred ---------------------EEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 177 ---------------------LESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 177 ---------------------~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
+.. ..+|.+.|.++.|+.++.|++++.|++||+|++....+. .++ .|+.-|+|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~e-f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL----~~F-~HndfVTc 414 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCE-FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECL----KVF-SHNDFVTC 414 (712)
T ss_pred cccCCccccCCCccccccccchhh-hhccchhheecccccCCeeEeccccccEEeecCCCccee----eEE-ecCCeeEE
Confidence 000 136999999999999999999999999999998765433 332 59999999
Q ss_pred EEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeee
Q 044557 236 LALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 236 i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
|+|+| |.+|+++|+.|+.||+|++...+ . ..+..-..-|++++|.|+ ..+.|+-+|.+++|+..+-++..-.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~--V---v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKK--V---VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCe--e---EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 99999 88999999999999999997532 2 223333467899998765 8999999999999986543332211
Q ss_pred Eec-------CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 313 VLE-------GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 313 ~l~-------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.+. .|. .|+++.|.|... + . |...|.|..|||+|.
T Consensus 490 ~I~~~~~Kk~~~~-rITG~Q~~p~~~------~-~-vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 490 HIRLHNKKKKQGK-RITGLQFFPGDP------D-E-VLVTSNDSRIRIYDG 531 (712)
T ss_pred eEeeccCccccCc-eeeeeEecCCCC------C-e-EEEecCCCceEEEec
Confidence 111 233 899999987532 1 3 446678999999998
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-24 Score=174.63 Aligned_cols=261 Identities=20% Similarity=0.347 Sum_probs=191.4
Q ss_pred ceeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeec------CCC--------Ccccc--eee----e----
Q 044557 5 SVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDC------NTF--------SSELD--QEF----L---- 58 (362)
Q Consensus 5 ~~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~------~~~--------~~~~~--~~~----~---- 58 (362)
+.-..+|+.++.||.+.|.+|.|. +.+++|+|.|++..||.. ... +.+.+ .+. .
T Consensus 176 s~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~ 255 (481)
T KOG0300|consen 176 SLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEK 255 (481)
T ss_pred eeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccc
Confidence 345678999999999999999994 779999999999999972 110 00000 000 0
Q ss_pred cc-------ceeEEeecceeEEEEEc--CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccce
Q 044557 59 SN-------NNIVAVGKGAVKSLVVL--ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQ 129 (362)
Q Consensus 59 ~~-------~~~~~~~~~~v~~i~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (362)
.+ ...+..|.+.|.+..+. ++.++++++|.+..+||++.++...
T Consensus 256 sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~--------------------------- 308 (481)
T KOG0300|consen 256 SDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN--------------------------- 308 (481)
T ss_pred cCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec---------------------------
Confidence 00 11122344555555443 4569999999999999998765321
Q ss_pred eeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce-EEEeeeccCcccEEEEEEcCCCcEEEEeCCCeE
Q 044557 130 IRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-CLESITNAHDDAINAVALSDDGDVYTGSADKKI 208 (362)
Q Consensus 130 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i 208 (362)
.+-+|....+-++-+|..+++++.+.|.+.|+||.+..- .+..+ .+|++.|+++.|.-+.++++|+.|.+|
T Consensus 309 -------~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF-QGHtdtVTS~vF~~dd~vVSgSDDrTv 380 (481)
T KOG0300|consen 309 -------ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF-QGHTDTVTSVVFNTDDRVVSGSDDRTV 380 (481)
T ss_pred -------cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee-cccccceeEEEEecCCceeecCCCceE
Confidence 112566677778889999999999999999999998532 34444 589999999999999999999999999
Q ss_pred EEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-
Q 044557 209 KVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD- 287 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 287 (362)
++||+.+.... +.++ ....+++.++++..+..|+.--....||+||+....-....-..-.+|..-|.|++|..+
T Consensus 381 KvWdLrNMRsp---lATI-RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 381 KVWDLRNMRSP---LATI-RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred EEeeeccccCc---ceee-ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence 99999865422 2222 246789999999877788887778899999997543221111234588888999999755
Q ss_pred ---eEEEeeCCCcEEEeeCC
Q 044557 288 ---LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 288 ---~~~s~s~D~~i~~W~~~ 304 (362)
-+.+++-|+.+.-|++.
T Consensus 457 p~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred cccccccccccceeeeeEec
Confidence 48899999999999864
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-24 Score=192.58 Aligned_cols=230 Identities=17% Similarity=0.252 Sum_probs=179.3
Q ss_pred EcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-
Q 044557 76 VLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE- 154 (362)
Q Consensus 76 ~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~- 154 (362)
+..+.|++++..|.|.+||+..... +.....+..|...+.++.|++..
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~r-------------------------------nk~l~~f~EH~Rs~~~ldfh~tep 146 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIR-------------------------------NKLLTVFNEHERSANKLDFHSTEP 146 (839)
T ss_pred chhhhheeecCCCcEEEEecCcccc-------------------------------chhhhHhhhhccceeeeeeccCCc
Confidence 3456799999999999999964210 00111234688999999998865
Q ss_pred CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccc
Q 044557 155 TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG 232 (362)
Q Consensus 155 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~ 232 (362)
.+|++||+||+|++||++..+...++. .....|+.|+|+|.. .|+++...|.+.+||+.... .....+..|.++
T Consensus 147 ~iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---r~~~k~~AH~Gp 222 (839)
T KOG0269|consen 147 NILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---RCEKKLTAHNGP 222 (839)
T ss_pred cEEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccCCCceEEEecCCceEEEeeccCch---hHHHHhhcccCc
Confidence 689999999999999999888776664 567889999999754 48899999999999997543 345567789999
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEee--CCCcEEEeeCCCCc
Q 044557 233 INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGS--ADKTIRIWRGIDRN 307 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s--~D~~i~~W~~~~~~ 307 (362)
|.++.|+|++.+|||||.|++|++||..+.+..... ++. -..+|.++.|-|. +|+++| .|-.|++||+ .+.
T Consensus 223 V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~--tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv-rRP 298 (839)
T KOG0269|consen 223 VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH--TIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV-RRP 298 (839)
T ss_pred eEEEeecCCCceeeecCCCccEEEEeccCCCcccee--EEe-ecceeeeeeeccCccchhhhhhccccceEEEEee-ccc
Confidence 999999999999999999999999998754433221 111 2456788888664 677776 5889999996 567
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
+-+.+++..|.+.++.++|.. .+...|.|+|.||+|.
T Consensus 299 YIP~~t~~eH~~~vt~i~W~~--------~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 299 YIPYATFLEHTDSVTGIAWDS--------GDRINLWSCSKDGTVL 335 (839)
T ss_pred cccceeeeccCccccceeccC--------CCceeeEeecCccHHH
Confidence 888889999999999998843 2234688999999863
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=177.88 Aligned_cols=245 Identities=18% Similarity=0.274 Sum_probs=184.2
Q ss_pred ceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCcee
Q 044557 69 GAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVS 146 (362)
Q Consensus 69 ~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 146 (362)
..+.|..+++| +|++++.||-|.+|+..++....- +. ..-...+.-+.++|.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD----Lk----------------------YQAqd~fMMmd~aVl 267 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD----LK----------------------YQAQDNFMMMDDAVL 267 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhh----hh----------------------hhhhcceeecccceE
Confidence 45667777765 699999999999999876542110 00 000112234678999
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 147 ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
|+.|+.|...||+|+.||.|++|.++++.|++.+..+|+..|+++.|+.|+. +++++-|.++++--+.+++ +.+.
T Consensus 268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK----~LKE 343 (508)
T KOG0275|consen 268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK----CLKE 343 (508)
T ss_pred EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch----hHHH
Confidence 9999999999999999999999999999999999999999999999998875 9999999999999887764 5667
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE---eCCeEEEeeCCCcEEEee
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV---VSDLVCSGSADKTIRIWR 302 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~---~~~~~~s~s~D~~i~~W~ 302 (362)
+.+|.+.|+...|++||.++++++.||+|++|+..+.++.. .. ...+..-.|..+.. +++.++.+-..++|.+-+
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~-Tf-k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS-TF-KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhh-hc-cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 88999999999999999999999999999999987654321 11 11223345666554 356888888888998887
Q ss_pred CCCCceeeeeEec-CC--CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GIDRNYTCLAVLE-GH--RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~~~~~~~~~l~-~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.. ++.+..+. |. .+...++..+| .|.++...+.|+.+..+.+.
T Consensus 422 ~q---GQvVrsfsSGkREgGdFi~~~lSp---------kGewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 422 MQ---GQVVRSFSSGKREGGDFINAILSP---------KGEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred cc---ceEEeeeccCCccCCceEEEEecC---------CCcEEEEEccCcEEEEEEee
Confidence 42 34455443 22 22333444444 44578888999999888763
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=157.66 Aligned_cols=249 Identities=21% Similarity=0.295 Sum_probs=183.0
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-----e-eE
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-----K-LF 82 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~-l~ 82 (362)
+...-+.|.+.|.|.+|+ |++|+|||.|.+|++-.++..+... .+....+..|.+.++.+.+..+ . |+
T Consensus 81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~----~g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA----TGHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc----cCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 334456799999999995 8999999999999998776543221 1122334557788888877543 2 44
Q ss_pred EEecCCcEEEE--ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 83 SAHQDHKIRVW--KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 83 s~~~dg~i~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
+++ -|..++| |...+.+ ...+.+|++.|.++ ++-++-++++|
T Consensus 157 s~g-agdc~iy~tdc~~g~~----------------------------------~~a~sghtghilal-yswn~~m~~sg 200 (350)
T KOG0641|consen 157 SAG-AGDCKIYITDCGRGQG----------------------------------FHALSGHTGHILAL-YSWNGAMFASG 200 (350)
T ss_pred ecC-CCcceEEEeecCCCCc----------------------------------ceeecCCcccEEEE-EEecCcEEEcc
Confidence 443 3444444 3322211 11234688888877 45567899999
Q ss_pred ECCCcEEEEECCCceEEEeeecc------CcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccce
Q 044557 161 SWDRTIKIWRTSDFKCLESITNA------HDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~------h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
++|++||+||++-..+++.+... ...+|.+++..|.|+ +++|-.|..-.+||+..+.+.+. +..|...|
T Consensus 201 sqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~----f~phsadi 276 (350)
T KOG0641|consen 201 SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR----FHPHSADI 276 (350)
T ss_pred CCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee----eCCCccce
Confidence 99999999999988888876432 235799999999998 67888999999999987765443 45689999
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 234 NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 234 ~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
.++.|+|.-.++++++.|..|++-|++..-.....+.....|...+..+.|.+. .+++.|.|+++.+|-.
T Consensus 277 r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 999999999999999999999999987532222223344568888888888764 5899999999999963
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=180.32 Aligned_cols=282 Identities=20% Similarity=0.367 Sum_probs=204.7
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEE
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRV 92 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~ 92 (362)
.|..-|.++.++ .++++||+. |-|||||+............ .++. ....+++..+.+ +.|++|+.-.++.+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqL---dcl~-rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQL---DCLN-RDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccc---cccC-cccceeeeEecCCCceEEeccccceeee
Confidence 478888888885 578999976 88999998754211111111 1110 123455555544 45999999999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
||+....+... ..++. -.-...+++.+||.++.++|..||.|.|||+.
T Consensus 492 WDLAapTprik-----aelts---------------------------sapaCyALa~spDakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 492 WDLAAPTPRIK-----AELTS---------------------------SAPACYALAISPDAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred eeccCCCcchh-----hhcCC---------------------------cchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence 99975432110 00000 01124567889999999999999999999999
Q ss_pred CceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC
Q 044557 173 DFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD 251 (362)
Q Consensus 173 ~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d 251 (362)
+...++.+. +|++.+.||.++++|. |.+|+-|++||-||+..+...+. ......|.++.++|++.+|+.|=..
T Consensus 540 nq~~Vrqfq-GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq-----hdF~SQIfSLg~cP~~dWlavGMen 613 (705)
T KOG0639|consen 540 NQTLVRQFQ-GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----HDFSSQIFSLGYCPTGDWLAVGMEN 613 (705)
T ss_pred cceeeeccc-CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh-----hhhhhhheecccCCCccceeeeccc
Confidence 999999886 8999999999999996 99999999999999988754321 1235679999999999999999999
Q ss_pred CcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 252 RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 252 ~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
+.+-+-.....+. ..+.-|...|+++.|. +..+++.+.|.-+..|+.- -+..+-.. ..++.|.++.++.+
T Consensus 614 s~vevlh~skp~k-----yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP--yGasiFqs-kE~SsVlsCDIS~d 685 (705)
T KOG0639|consen 614 SNVEVLHTSKPEK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP--YGASIFQS-KESSSVLSCDISFD 685 (705)
T ss_pred CcEEEEecCCccc-----eeecccccEEEEEEecccCceeeecCchhhhhhccCc--cccceeec-cccCcceeeeeccC
Confidence 9887776654321 1244588889999885 6799999999999999842 22222222 35667888776543
Q ss_pred CCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 330 NDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 330 ~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+||++||.|....||.+-|
T Consensus 686 ---------dkyIVTGSGdkkATVYeV~Y 705 (705)
T KOG0639|consen 686 ---------DKYIVTGSGDKKATVYEVIY 705 (705)
T ss_pred ---------ceEEEecCCCcceEEEEEeC
Confidence 36899999999999998754
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=179.82 Aligned_cols=250 Identities=18% Similarity=0.277 Sum_probs=177.7
Q ss_pred CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhcccccccee-eeeeeeEEeeecCceeEEEEecCC-C
Q 044557 78 ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQI-RRHKTCTWVHHVDAVSALALTKDE-T 155 (362)
Q Consensus 78 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~-~ 155 (362)
+++++.|+.|..|.+||+.-.....+.+.- ... .+..+. ...+.....+|++.|.+++++.+- +
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~L-Gs~-------------~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n 257 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTL-GSK-------------ASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN 257 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceee-chh-------------hhhhhhhhcccccccccchHHHHHHHhccccce
Confidence 467999999999999998754432221111 000 000000 011222335799999999998765 5
Q ss_pred EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccce
Q 044557 156 LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
+||+||.|.+|++||+.++++...+. .|...|.++.|+|... +++|+.|++|++.|........... ...+.|
T Consensus 258 VLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w----k~~g~V 332 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW----KFDGEV 332 (463)
T ss_pred eEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE----Eeccce
Confidence 89999999999999999999988876 6899999999998653 8899999999999988532221111 235678
Q ss_pred eEEEEecCCC-EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCeEEEeeCCCcEEEeeCCCCcee
Q 044557 234 NALALSCDGS-VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDLVCSGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 234 ~~i~~s~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D~~i~~W~~~~~~~~ 309 (362)
-.++|.|... .++++..||+++-+|++.... .+.+++.|.+.|.+++++ +.+++|+|.|+.|++|+......+
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~---~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK---PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCC---ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 8999998654 566778899999999998654 345677899999999885 569999999999999997544333
Q ss_pred eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 310 CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 310 ~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.++.-.-..+...|.++.|+ ...+++.|+.-+.+||||+.
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~--------~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPD--------VAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ccccccccccceeecccCCC--------cceEEEecCccceEEEeecc
Confidence 33211111223444444333 34578888888899999984
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=175.43 Aligned_cols=266 Identities=14% Similarity=0.220 Sum_probs=170.2
Q ss_pred EeecceeEEEEEcCce---eEEEecCCcEEEEecCCCCCCccc------ceeeeeccCCCchhhhhccccccceeeeee-
Q 044557 65 AVGKGAVKSLVVLADK---LFSAHQDHKIRVWKINNQEPDHQK------YTRLATLPTLGDRAIKLLMPKNHVQIRRHK- 134 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~~---l~s~~~dg~i~~w~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 134 (362)
..|...|.+++-.++. +++|+.||.|++||+...+..... +..+... .+. ......+..+..+...
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~---~~~-~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVT---QTS-FFTVGDDKTVKQWKIDG 138 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEec---ccc-eEEecCCcceeeeeccC
Confidence 4566777777766654 899999999999999754321100 0000000 000 0000000001111100
Q ss_pred -eeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEE
Q 044557 135 -TCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVW 211 (362)
Q Consensus 135 -~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw 211 (362)
......-...+..+.-+..+..++|||+ .|.|||.+...++..+.- -.+.|.++.|+|-.. |++++.|+.|.+|
T Consensus 139 ~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 139 PPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred CcceeeeccccccccccccccccccccCc--eeeecccccCCccceeec-CCCceeEEecCCCcchheeeeccCCceEEE
Confidence 0000011223344444444555666553 466666655555555543 345788999999775 6788899999999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eE
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LV 289 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~ 289 (362)
|+..+.+.++++..+ .-+.|+|+|.+--+.+|+.|..++.||++.-.. .+....+|...|.+++|+|. -+
T Consensus 216 D~R~~~Pl~KVi~~m-----RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~---p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 216 DLRQASPLKKVILTM-----RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR---PLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ecccCCccceeeeec-----cccceecCccccceeeccccccceehhhhhhcc---cchhhcccceeEEEeccCCCcchh
Confidence 999988777665433 346799999888888999999999999986443 34567899999999999864 79
Q ss_pred EEeeCCCcEEEeeCCCCceeeeeEe-cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 290 CSGSADKTIRIWRGIDRNYTCLAVL-EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 290 ~s~s~D~~i~~W~~~~~~~~~~~~l-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+|||-|++||||....... ..++ ..-...|.++.++.|. ++|+|||+|+.||+|.-
T Consensus 288 vsgsyDksIRIf~~~~~~S--RdiYhtkRMq~V~~Vk~S~Ds---------kyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHS--RDIYHTKRMQHVFCVKYSMDS---------KYIISGSDDGNVRLWKA 344 (433)
T ss_pred ccccccceEEEeecCCCcc--hhhhhHhhhheeeEEEEeccc---------cEEEecCCCcceeeeec
Confidence 9999999999998643221 1111 1124468899987653 57999999999999975
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=190.67 Aligned_cols=256 Identities=21% Similarity=0.312 Sum_probs=185.7
Q ss_pred ceeEEEEEcCce--eEEEe--cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 69 GAVKSLVVLADK--LFSAH--QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 69 ~~v~~i~~~~~~--l~s~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
..+.++++.++. +++|+ .|+.+++|+.+.-....... . .......++...|.+.
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~--~--------------------~~l~k~l~~m~~h~~s 71 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEK--N--------------------ENLPKHLCTMDDHDGS 71 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhh--h--------------------cccchhheeeccccCc
Confidence 357777777764 88888 89999999875322110000 0 0011223455679999
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCC------------------ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSD------------------FKCLESITNAHDDAINAVALSDDGD-VYTGSAD 205 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~------------------~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d 205 (362)
|.|+.|+|||++||+||+|+.|.||.... +++...+ .+|...|..++|+|++. +++++.|
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLD 150 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccCCCccEEEEeccc
Confidence 99999999999999999999999998762 2233334 47999999999999987 7899999
Q ss_pred CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc------cee
Q 044557 206 KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT------KSI 279 (362)
Q Consensus 206 g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~------~~v 279 (362)
++|.||+..+. ..+..+.+|...|..+.|.|-|+|+++-+.|++|++|...+-. +...+.++. ...
T Consensus 151 nsViiwn~~tF----~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~----i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 151 NSVIIWNAKTF----ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG----IEKSITKPFEESPLTTFF 222 (942)
T ss_pred ceEEEEccccc----eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce----eeEeeccchhhCCCccee
Confidence 99999998765 3566788999999999999999999999999999999965421 222223222 234
Q ss_pred EEEEEeCC--eEEEee----CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCC-C------Cc-eEEEec
Q 044557 280 LCMAVVSD--LVCSGS----ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSS-D------TS-YLVCSG 345 (362)
Q Consensus 280 ~~~~~~~~--~~~s~s----~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~-~------~~-~~l~s~ 345 (362)
+.+.|+|+ +|++.- .-.++.|-+ ..++++-..|-||..++.++.|+|.-..-... . .. ..+|+|
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~Iie--R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIE--RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEe--cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 66777765 776643 234566665 34677778899999999999999853211101 0 11 279999
Q ss_pred CCCCcEEEEecc
Q 044557 346 SLDCDIKVWQIS 357 (362)
Q Consensus 346 s~D~~i~~W~~~ 357 (362)
|.|++|-||...
T Consensus 301 SqDrSlSVW~T~ 312 (942)
T KOG0973|consen 301 SQDRSLSVWNTA 312 (942)
T ss_pred cCCccEEEEecC
Confidence 999999999984
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=173.04 Aligned_cols=201 Identities=26% Similarity=0.397 Sum_probs=159.8
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCC---C
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPG---N 217 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~---~ 217 (362)
.+.|.|++-+|+|.+|+.|+..+.|++|.+.++..+..+ .+|.++|+++.|+.||. ++||+.||.|.+|.+.+- .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 357899999999999999989999999999999998877 58999999999999987 899999999999976431 1
Q ss_pred --CcceeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEE
Q 044557 218 --KKHSLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCS 291 (362)
Q Consensus 218 --~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s 291 (362)
........+..|.-+|+.+.+.+. ..+|+|+|.|.++++||+..+. +..... -...+.+++.++ ..+..
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--LLlti~---fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--LLLTIT---FPSSIKAVALDPAERVVYI 234 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce--eeEEEe---cCCcceeEEEcccccEEEe
Confidence 112234556789999999988764 5799999999999999997642 222222 234577888765 37889
Q ss_pred eeCCCcEEEeeCCCC--------------ceeeeeEecCCCC--cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 292 GSADKTIRIWRGIDR--------------NYTCLAVLEGHRG--PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~--------------~~~~~~~l~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|++||.|-+-.+..- ....+..+.||++ +|+|++.+-|+ .+|+||+.||++.|||
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg---------tlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG---------TLLLSGDEDGKVCVWD 305 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc---------cEEEeeCCCCCEEEEe
Confidence 999999877654211 1234567899999 99999997654 5799999999999999
Q ss_pred cc
Q 044557 356 IS 357 (362)
Q Consensus 356 ~~ 357 (362)
+.
T Consensus 306 i~ 307 (476)
T KOG0646|consen 306 IY 307 (476)
T ss_pred cc
Confidence 83
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-22 Score=161.99 Aligned_cols=241 Identities=19% Similarity=0.257 Sum_probs=170.4
Q ss_pred cceeEEEEEcC--ce-eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 68 KGAVKSLVVLA--DK-LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 68 ~~~v~~i~~~~--~~-l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
+..|+.+.+++ +. ++.+++|++||+|+++......+ .....|.++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--------------------------------ka~~~~~~P 74 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--------------------------------KAQQSHDGP 74 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc--------------------------------hhhhccCCC
Confidence 45677888876 23 55889999999999975321000 011357889
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc---EEEEeCCCeEEEEeCCCCCCcce
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD---VYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~---~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
|.+++|+.||..+++|+.|+.+++||+.+++... +. .|..+|..+.|-+... |+||+.|++||.||.....+..+
T Consensus 75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~-v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ-VA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT 152 (347)
T ss_pred eEEEEEccCCceEEeeccCCceEEEEccCCCeee-ee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeee
Confidence 9999999999999999999999999999996544 43 6999999999876542 78999999999999986654332
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEE
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIR 299 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~ 299 (362)
+ .-+..|.++.. -...++.+..++.|.+|+++++..+...+..- -.-.++|++.. .+..+-||-.|.+-
T Consensus 153 ~-----~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 153 L-----QLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESP--LKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred e-----eccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCc--ccceeeEEEEEecCCceEeeeecceEE
Confidence 2 12334544433 34578888999999999997654332221110 12235677653 44679999999999
Q ss_pred EeeCCCCceeeeeEecCCCC---------cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 300 IWRGIDRNYTCLAVLEGHRG---------PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~---------~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
+-.+..+..+.--+++.|.. +|++++|+|... .|+++|.||++-+||-+-.+
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg---------tlvTaGsDGtf~FWDkdar~ 284 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG---------TLVTAGSDGTFSFWDKDART 284 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc---------eEEEecCCceEEEecchhhh
Confidence 98765532222334555653 688899988543 58999999999999975433
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=165.68 Aligned_cols=195 Identities=22% Similarity=0.459 Sum_probs=154.3
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcce
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
.+.|..+.|+|.++.|++++|||.+++||+........+ .|..++.+++|.++.++++|+.||.|+++|+.++...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~-- 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED-- 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCCceEEEeccCceEEEEEecCCcce--
Confidence 467899999999999999999999999999887655555 4888999999999999999999999999999887532
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEe
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW 301 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W 301 (362)
.+..|..+|.+|.+++....+++||.|++|++||.+... ....+. ..+.|.|+...++.|+.|..|+.|.+|
T Consensus 89 ---~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~----~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iy 160 (323)
T KOG1036|consen 89 ---QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV----VVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIY 160 (323)
T ss_pred ---eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc----cccccc-cCceEEEEeccCCEEEEeecCceEEEE
Confidence 345799999999999988999999999999999987522 122222 345899999999999999999999999
Q ss_pred eCCCCc-------------eeeee---------------------------------EecCCCC---------cEEEEEe
Q 044557 302 RGIDRN-------------YTCLA---------------------------------VLEGHRG---------PVKCLAA 326 (362)
Q Consensus 302 ~~~~~~-------------~~~~~---------------------------------~l~~h~~---------~v~~~~~ 326 (362)
|+..-. ..++. .++.|.. +|++++|
T Consensus 161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 853100 00000 1233432 6788888
Q ss_pred eecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 327 AIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 327 ~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+|-. ..+|||+.||.|.+||+.
T Consensus 241 hp~~---------~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 241 HPIH---------GTFATGGSDGIVNIWDLF 262 (323)
T ss_pred cccc---------ceEEecCCCceEEEccCc
Confidence 7642 359999999999999995
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=172.19 Aligned_cols=242 Identities=18% Similarity=0.319 Sum_probs=176.6
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~ 86 (362)
++.+|.|-.+.|+++.++ ++++++++.|+.+++|++.... .. ..+..|...|+++.+.. ..+++++.
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r--~~-------~TLsGHtdkVt~ak~~~~~~~vVsgs~ 281 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR--LR-------HTLSGHTDKVTAAKFKLSHSRVVSGSA 281 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh--hh-------hhhcccccceeeehhhccccceeeccc
Confidence 677899999999999995 7799999999999999987532 11 12234566777776543 34899999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
|.+|+.||+......... +| ...+..+..+ ...+++|=.|++|
T Consensus 282 DRtiK~WDl~k~~C~kt~------l~-----------------------------~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 282 DRTIKLWDLQKAYCSKTV------LP-----------------------------GSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred cchhhhhhhhhhheeccc------cc-----------------------------cccccceEec--ceeeeecccccce
Confidence 999999999764321110 00 0112223322 4467788899999
Q ss_pred EEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 167 KIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
|+||.+...+...+. -.+.|+++..++++. +++++.|.++++.|+.+.+..+.+...-..-....+.+.|||++.|+
T Consensus 325 RfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv 402 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV 402 (459)
T ss_pred EEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCcee
Confidence 999999988877764 335899999999996 89999999999999987654433322111123348899999999999
Q ss_pred EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEee
Q 044557 246 YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWR 302 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~ 302 (362)
++||.||.|++|++.+++.+. .....+....|++++|++ ..+++++.++.+.+|.
T Consensus 403 aAGS~dgsv~iW~v~tgKlE~--~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 403 AAGSADGSVYIWSVFTGKLEK--VLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeccCCCcEEEEEccCceEEE--EeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999998754322 222222233699999964 5899999999999994
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-21 Score=172.07 Aligned_cols=270 Identities=19% Similarity=0.258 Sum_probs=194.2
Q ss_pred ccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEee-cceeEEEEEc-CceeEEEecCCcEEEEe
Q 044557 19 NSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVG-KGAVKSLVVL-ADKLFSAHQDHKIRVWK 94 (362)
Q Consensus 19 ~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~-~~~l~s~~~dg~i~~w~ 94 (362)
..+|.+++++ ++.||.+-.||.|.+|++...-. ...++..+ ...+.++++. +.+|++.+.+|+|.-||
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~--------~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF--------LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWD 96 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCce--------eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEe
Confidence 5689999995 67899999999999999865321 01122223 3578888888 66899999999999999
Q ss_pred cCCCCCCcc------cceeeeeccCCCchhhhhccccccceeeee--eee----EEeeecCceeEEEEecCCCEEEEEEC
Q 044557 95 INNQEPDHQ------KYTRLATLPTLGDRAIKLLMPKNHVQIRRH--KTC----TWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 95 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+.+.++... .+-.+...|......+. +.++....... ..- .+...++++.+++|+|++..+++|+.
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig--cddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIG--CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccceEEee--cCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 977654211 11111112211111111 00110000000 000 11224578999999999999999999
Q ss_pred CCcEEEEECCCceEEEe-------eeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 163 DRTIKIWRTSDFKCLES-------ITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~-------~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
||.|++||...+..+.. +......-|+++.|-.++.+++|..-|+|++||...+. ++.....|.+.|.+
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT----LiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT----LIQSHSCHDADVLA 250 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc----hhhhhhhhhcceeE
Confidence 99999999998876552 11113345899999999999999999999999988764 45556679999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEee
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWR 302 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~ 302 (362)
++.++++.+++++|.|+.|..|.......++........|...|.++++.++.+++|+.|.++.+=.
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICS 317 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEcc
Confidence 9999999999999999999999887655555566667789999999999989999999998876653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=161.43 Aligned_cols=199 Identities=23% Similarity=0.376 Sum_probs=159.3
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEe-eeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLES-ITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSP 215 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~ 215 (362)
.+|...+.+++|+.+|..|++|+.|+++++|+++..+.... ...+|.+.|..++|.|.. .+++++.|++|++||...
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 46888999999999999999999999999999987754333 235788899999998765 388999999999999998
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC-----------------------------C--
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD-----------------------------G-- 264 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~-----------------------------~-- 264 (362)
+++..... ....-..+.|+|+|.+++.++.|..|.+.|.++.. +
T Consensus 97 ~k~~~~i~-----~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 97 GKCTARIE-----TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred CcEEEEee-----ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence 86554332 22333458899999999999999999999864311 0
Q ss_pred ------cEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCC
Q 044557 265 ------NILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSS 336 (362)
Q Consensus 265 ------~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~ 336 (362)
.+..+..+++|...+.|+.|+|+ ++|+||.|..+-+||.. ...|+..+..|.=+|..++|+-++
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~--ELiC~R~isRldwpVRTlSFS~dg------ 243 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD--ELICERCISRLDWPVRTLSFSHDG------ 243 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh--HhhhheeeccccCceEEEEeccCc------
Confidence 11122345679888899999865 99999999999999963 467888899999999999998654
Q ss_pred CCceEEEecCCCCcEEE
Q 044557 337 DTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 337 ~~~~~l~s~s~D~~i~~ 353 (362)
++|||||.|.-|-|
T Consensus 244 ---~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 244 ---RMLASASEDHFIDI 257 (313)
T ss_pred ---ceeeccCccceEEe
Confidence 68999999988743
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=175.53 Aligned_cols=265 Identities=17% Similarity=0.270 Sum_probs=195.8
Q ss_pred ccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEE
Q 044557 16 KGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVW 93 (362)
Q Consensus 16 ~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w 93 (362)
.+|+..-+.|++ +|++|+||+.||.||+|+......+.+ .+..+...+.++....+.+++++.+++|..|
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~--------ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE--------TIDISGELVSSIACYSNHFLTGSEQNTVLRY 81 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc--------hhhccCceeEEEeecccceEEeeccceEEEe
Confidence 368888999998 488999999999999999765421111 1111345677777778899999999999999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 173 (362)
.....+... -+ -..+-++++++|+.+|+++|.||.|-.|++-++.+
T Consensus 82 ~fps~~~~~----iL------------------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 82 KFPSGEEDT----IL------------------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred eCCCCCccc----ee------------------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccc
Confidence 887654210 00 01234678999999999999999999999999988
Q ss_pred ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc---c-ccceeEEEEecCCCEEEEE
Q 044557 174 FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER---H-NSGINALALSCDGSVLYSG 248 (362)
Q Consensus 174 ~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---h-~~~v~~i~~s~~~~~l~s~ 248 (362)
......+ .+|..+|.++.|+|++. +++.+.||+|++|+++++.....+....+. - ...++.++|+|+|..++..
T Consensus 128 ~s~~~~l-rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 128 SSQEKVL-RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred cchheee-cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 7766655 48999999999999998 677889999999999987654444322221 1 3456788999999999999
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEe
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~ 326 (362)
+.|+.|++|+...-+....+ ..+.+...+.++.|+| .+||+++.||.|.||+... . .. ..-...|.+++|
T Consensus 207 ~~d~~Vkvy~r~~we~~f~L--r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t--~---~~-~~~~~~Vc~~aw 278 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQFKL--RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT--H---ER-HEFKRAVCCEAW 278 (933)
T ss_pred ccCCeEEEEccCCceeheee--cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc--c---hh-ccccceeEEEec
Confidence 99999999998754332221 1222334477788875 4999999999999999642 1 01 223457888888
Q ss_pred eecCC
Q 044557 327 AIDND 331 (362)
Q Consensus 327 ~~~~~ 331 (362)
.|+.+
T Consensus 279 ~p~~n 283 (933)
T KOG1274|consen 279 KPNAN 283 (933)
T ss_pred CCCCC
Confidence 87654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=176.15 Aligned_cols=281 Identities=21% Similarity=0.279 Sum_probs=192.0
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCccccee
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~ 107 (362)
..|+.+..||.|.++|........++. .......|.+.|..+.+.+. .|++++.|.+++.||++......
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~---~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G----- 136 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEER---QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG----- 136 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhh---hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec-----
Confidence 579999999999999976533221110 00112346677777766653 49999999999999997643210
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEEECCCcEEEEECCCceE--E-------
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKC--L------- 177 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~--~------- 177 (362)
...+.+|...|.+++|.|... .|++|+.||.|.|||++.... +
T Consensus 137 ---------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 137 ---------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred ---------------------------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence 113468999999999999764 799999999999999863220 0
Q ss_pred ------------------EeeeccCcc----cEEEEEEcCCCcEEEEeC-CCeEEEEeCCCCCCccee----ehhhhcc-
Q 044557 178 ------------------ESITNAHDD----AINAVALSDDGDVYTGSA-DKKIKVWRRSPGNKKHSL----VDVLERH- 229 (362)
Q Consensus 178 ------------------~~~~~~h~~----~v~~v~~~~~~~~~s~~~-dg~i~iw~~~~~~~~~~~----~~~~~~h- 229 (362)
+.. +++.. .|+.+.|-++..|++++. |+.||+||+......... ...+..|
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s 268 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS 268 (720)
T ss_pred hccccCCCCCCchhhcccccc-ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc
Confidence 000 12322 355566666677888776 999999999764321111 1112223
Q ss_pred --ccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce---eE-EEEEeCCeEEEeeCCCcEEEeeC
Q 044557 230 --NSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS---IL-CMAVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 230 --~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~---v~-~~~~~~~~~~s~s~D~~i~~W~~ 303 (362)
.-++.++.....|.+|++.+.|+.|++|++...... .+..+.++... +. ++.+.+.++++|+.|....+|.+
T Consensus 269 krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s--P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~v 346 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS--PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVV 346 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC--chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeee
Confidence 346777777778899999999999999999764432 23334444332 21 23344559999999999999986
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.. -......+.||.-.|+++++.|... .. ++++|+|-++++|++.
T Consensus 347 s~-~e~~~~~l~Ght~eVt~V~w~pS~~-------t~-v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 347 SS-PEAPPALLLGHTREVTTVRWLPSAT-------TP-VATCSDDFRVKIWRLS 391 (720)
T ss_pred cC-ccCChhhhhCcceEEEEEeeccccC-------CC-ceeeccCcceEEEecc
Confidence 43 2344567889999999999987643 22 6678999999999994
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=182.80 Aligned_cols=227 Identities=17% Similarity=0.265 Sum_probs=169.0
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc---CceeEEEecCCcEEEEecCCCCCCccc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL---ADKLFSAHQDHKIRVWKINNQEPDHQK 104 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~ 104 (362)
+.++|||++..|.|-+||+........ ..+...|+..+.++.+. ++.|++|++||+|++||++.....
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~------l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~--- 169 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKL------LTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK--- 169 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchh------hhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc---
Confidence 478999999999999999875321111 00122345566666654 567999999999999999764321
Q ss_pred ceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-CCEEEEEECCCcEEEEECCCceE-EEeeec
Q 044557 105 YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWRTSDFKC-LESITN 182 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~ 182 (362)
.++.+..+.|+.++|+|. +..|+++.+.|.+++||++..+. ...+ .
T Consensus 170 -------------------------------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~-~ 217 (839)
T KOG0269|consen 170 -------------------------------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL-T 217 (839)
T ss_pred -------------------------------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh-h
Confidence 112234567899999884 57899999999999999998754 3444 4
Q ss_pred cCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC-EEEEEcC--CCcEEEEe
Q 044557 183 AHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGAC--DRSIIVWE 258 (362)
Q Consensus 183 ~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~--d~~i~~wd 258 (362)
+|.++|.++.|+|++. |+||+.|+.|+||+..+..... ..++ ....+|..+.|-|+.. +|++++. |-.|++||
T Consensus 218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~--~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP--KHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc--eeEE-eecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 8999999999999876 8899999999999998654322 1122 1357899999999765 5666654 77899999
Q ss_pred ccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEe
Q 044557 259 KEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIW 301 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W 301 (362)
++. ++.....+..|...++.++|.. ..+.++|.|++|..-
T Consensus 295 vrR---PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 295 VRR---PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred ecc---ccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 974 3445667788999999999953 479999999998644
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-20 Score=151.85 Aligned_cols=239 Identities=19% Similarity=0.221 Sum_probs=172.4
Q ss_pred cceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
.+.+.++.+.. +.+++++.|.++++||...+.... ++..+...+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~----------------------------------ti~skkyG~ 59 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK----------------------------------TINSKKYGV 59 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee----------------------------------Eeecccccc
Confidence 35677887764 458888999999999987654211 111233445
Q ss_pred eEEEEecCCCEEEEEE--CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee
Q 044557 146 SALALTKDETLLYSVS--WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
..+.|....+.++.++ .|.+||.-++.+.+.++.+. +|...|.+++.+|-+. +++++.|++|++||+...++..-+
T Consensus 60 ~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 60 DLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred cEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 5666655555555555 48999999999999999885 8999999999999876 999999999999999865433221
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec-CccceeEEEEEeCC--eEEEeeCCCcEE
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR-GHTKSILCMAVVSD--LVCSGSADKTIR 299 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~--~~~s~s~D~~i~ 299 (362)
+..+-..++|.|+|-.+|++...+.|++||++..+......-.+. +-......+.|+++ .++-+...+.+.
T Consensus 139 ------~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 139 ------NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIY 212 (311)
T ss_pred ------ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence 222334578999999999999888999999987633322222222 34556788889865 777777778899
Q ss_pred EeeCCCCceeeeeEecCCCCcE---EEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPV---KCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v---~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+-|+.. +....++.+|...- -...|+|++ +++.+|+.||+|.+|++..
T Consensus 213 ~lDAf~--G~~~~tfs~~~~~~~~~~~a~ftPds---------~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 213 LLDAFD--GTVKSTFSGYPNAGNLPLSATFTPDS---------KFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EEEccC--CcEeeeEeeccCCCCcceeEEECCCC---------cEEEEecCCCcEEEEEcCC
Confidence 988654 34566776665533 445566554 5789999999999999854
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=161.25 Aligned_cols=206 Identities=20% Similarity=0.388 Sum_probs=147.4
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce-----EEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEE
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-----CLESITNAHDDAINAVALSDDGD--VYTGSADKKIK 209 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~ 209 (362)
.+.+|.+.|++++|+.||++||+++.|+.|++|+++++. +++.- -..+-.+.++|+||-+ ++++-...+++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 345799999999999999999999999999999998753 22211 1223457899999986 55666777999
Q ss_pred EEeCCCC---CCcceee-----hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEE
Q 044557 210 VWRRSPG---NKKHSLV-----DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC 281 (362)
Q Consensus 210 iw~~~~~---~~~~~~~-----~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~ 281 (362)
+|.+... ......+ .....|+.++..+-+..++.+|++++.|..|.+|++.. + .+..+......-..
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q----~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-Q----LLQSIDTNQSSNYD 233 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-c----eeeeeccccccccc
Confidence 9976432 2111111 12234677888888888999999999999999999872 2 23333322222223
Q ss_pred EEE--eCCeEEEeeCCCcEEEeeCC---CCce---eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 282 MAV--VSDLVCSGSADKTIRIWRGI---DRNY---TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 282 ~~~--~~~~~~s~s~D~~i~~W~~~---~~~~---~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
.+. .+.++++++----|++|... ...+ ..+-.|+||++.|..++|+++..+ ++|.|.||++||
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r---------~vtvSkDG~wri 304 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR---------AVTVSKDGKWRI 304 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce---------eEEEecCCcEEE
Confidence 334 45589988888889999631 1122 223468999999999999877543 889999999999
Q ss_pred Eeccc
Q 044557 354 WQISF 358 (362)
Q Consensus 354 W~~~~ 358 (362)
||.+.
T Consensus 305 wdtdV 309 (420)
T KOG2096|consen 305 WDTDV 309 (420)
T ss_pred eeccc
Confidence 99853
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-23 Score=186.41 Aligned_cols=241 Identities=24% Similarity=0.436 Sum_probs=190.6
Q ss_pred EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCceeEEEecCCcEEEEecCCCCCCcccceee
Q 044557 31 FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKLFSAHQDHKIRVWKINNQEPDHQKYTRL 108 (362)
Q Consensus 31 ~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~ 108 (362)
+++....+-.+|+||..... .|...+.++.+ ....+++|+.|..+.+|.+......
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~~---------------~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i------- 63 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREFV---------------AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI------- 63 (825)
T ss_pred ccceeeeeeccccccchhhh---------------hhhhhhceeeeeccceeeccCCCceeeccccccCCchh-------
Confidence 34555666778888854211 12334444432 2345888999999999987432210
Q ss_pred eeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccE
Q 044557 109 ATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188 (362)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v 188 (362)
-.+.+|...|.++.|+++..+|++|+.+|+|++||++..+.++++. +|...+
T Consensus 64 ---------------------------~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~ 115 (825)
T KOG0267|consen 64 ---------------------------TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNI 115 (825)
T ss_pred ---------------------------heeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCc
Confidence 0124689999999999999999999999999999999999888876 899999
Q ss_pred EEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEE
Q 044557 189 NAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNIL 267 (362)
Q Consensus 189 ~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 267 (362)
.++.|+|-+. +++|+.|+.+++||..... +.....+|...|..+.|+|+|+++++|+.|.++++||+..++
T Consensus 116 ~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G----c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---- 187 (825)
T KOG0267|consen 116 TSVDFHPYGEFFASGSTDTDLKIWDIRKKG----CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---- 187 (825)
T ss_pred ceeeeccceEEeccccccccceehhhhccC----ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc----
Confidence 9999999987 6789999999999987443 344556789999999999999999999999999999986533
Q ss_pred EEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCC
Q 044557 268 VVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDND 331 (362)
Q Consensus 268 ~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~ 331 (362)
+...+++|.+.+..+.+.+. ++++||.|++|++|++ +++..+....+....|.+++|.+++.
T Consensus 188 ~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl--etfe~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 188 LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL--ETFEVISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred cccccccccccccccccCchhhhhccCCCCceeeeecc--ceeEEeeccCCccCCceeeeecCCce
Confidence 45678899999999998765 7899999999999995 35777777777788999999987654
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=163.71 Aligned_cols=207 Identities=22% Similarity=0.406 Sum_probs=156.6
Q ss_pred eecCceeEEEEec--CCCEEEEEECCCcEEEEECCC----------------ceEEEeeeccCcccEEEEEEcC--CCcE
Q 044557 140 HHVDAVSALALTK--DETLLYSVSWDRTIKIWRTSD----------------FKCLESITNAHDDAINAVALSD--DGDV 199 (362)
Q Consensus 140 ~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~----------------~~~~~~~~~~h~~~v~~v~~~~--~~~~ 199 (362)
.|.+.+.-+...+ +..+.++-++.|.|.||++.. .+++.++. +|...=..++||| .|.+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeeccccccccc
Confidence 3444444444443 445677778899999999853 12333443 6777778899998 5678
Q ss_pred EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce
Q 044557 200 YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS 278 (362)
Q Consensus 200 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~ 278 (362)
++|..-+.|++|...++.-.... ..+.+|...|-.+.|||. ...+++||.|++|+|||.+.......+. .+.|...
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~-~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~--~kAh~sD 304 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQ-RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS--TKAHNSD 304 (440)
T ss_pred ccCccccceEeeeeccCceeecC-ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE--eeccCCc
Confidence 99988899999988775421111 123459999999999995 4688999999999999999864433322 3789999
Q ss_pred eEEEEEeCC--eEEEeeCCCcEEEeeCCC-CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 279 ILCMAVVSD--LVCSGSADKTIRIWRGID-RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 279 v~~~~~~~~--~~~s~s~D~~i~~W~~~~-~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|.-++|+.+ +|++|+.||+++|||+.. ...++++.++-|+.+|+++.|+|.... .|+++|.|..|.|||
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s--------~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS--------VIAASGEDNQITIWD 376 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc--------eEEeccCCCcEEEEE
Confidence 999999754 899999999999999643 234678899999999999999987542 577888999999999
Q ss_pred ccc
Q 044557 356 ISF 358 (362)
Q Consensus 356 ~~~ 358 (362)
++.
T Consensus 377 lsv 379 (440)
T KOG0302|consen 377 LSV 379 (440)
T ss_pred eec
Confidence 964
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-23 Score=185.64 Aligned_cols=198 Identities=24% Similarity=0.438 Sum_probs=170.2
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~ 218 (362)
.|...+.++..-..++.+++|++|..+-+|.+....++..+. +|+.+|.++.|+++.. +++|+.+|+||+||++.+.
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk- 103 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK- 103 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhh-
Confidence 366677777776678899999999999999998887776654 8999999999998776 7789999999999998764
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADK 296 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~ 296 (362)
...++.+|...+.++.|+|-+.+.++|+.|..+.+||.+...+ ...+.+|...|.++.|+++ +++++++|.
T Consensus 104 ---~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc----~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 104 ---IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC----SHTYKSHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred ---hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc----eeeecCCcceeEEEeecCCCceeeccCCcc
Confidence 4557788999999999999999999999999999999985443 3456789999999999865 899999999
Q ss_pred cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 297 TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++++||. +.++.++.+.+|...|..+.|+|.. .++++||.|+++++||+.
T Consensus 177 tvki~d~--~agk~~~ef~~~e~~v~sle~hp~e---------~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 177 TVKIWDL--TAGKLSKEFKSHEGKVQSLEFHPLE---------VLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eeeeecc--cccccccccccccccccccccCchh---------hhhccCCCCceeeeeccc
Confidence 9999995 4466788999999999999987653 579999999999999997
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-21 Score=160.39 Aligned_cols=252 Identities=17% Similarity=0.262 Sum_probs=172.6
Q ss_pred cccCccceeeeEec----CcEEEEecCCCeEEEeecCCCCccc-----ceeeeccc--eeEEeecceeEEEEEcC---ce
Q 044557 15 LKGHNSYVSSLALA----GKFLYTGSSDNEVRSWDCNTFSSEL-----DQEFLSNN--NIVAVGKGAVKSLVVLA---DK 80 (362)
Q Consensus 15 l~gH~~~V~~l~~~----~~~l~t~s~Dg~i~vWd~~~~~~~~-----~~~~~~~~--~~~~~~~~~v~~i~~~~---~~ 80 (362)
.-+|.+.|..+... ..++++=+..|.|+||++......+ ........ .....|.+....+.+++ ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34688888877763 3578888899999999975421110 00001111 11123445556676665 34
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYS 159 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s 159 (362)
|++|.--+.|++|...++.- ......+.+|+..|..++|+|.. .+|++
T Consensus 227 LlsGDc~~~I~lw~~~~g~W-------------------------------~vd~~Pf~gH~~SVEDLqWSptE~~vfaS 275 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSW-------------------------------KVDQRPFTGHTKSVEDLQWSPTEDGVFAS 275 (440)
T ss_pred cccCccccceEeeeeccCce-------------------------------eecCccccccccchhhhccCCccCceEEe
Confidence 77777778899997654321 00111234689999999999965 58999
Q ss_pred EECCCcEEEEECCCc---eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 160 VSWDRTIKIWRTSDF---KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~---~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
||.||+|+|||++.+ .++. .++|.+.|+-|.|+..-. |++|+.||+++|||+..-+.. +.+..++.|..+|++
T Consensus 276 cS~DgsIrIWDiRs~~~~~~~~--~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pIts 352 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPKKAAVS--TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITS 352 (440)
T ss_pred eecCceEEEEEecCCCccceeE--eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeE
Confidence 999999999999987 2333 368999999999997665 889999999999999865433 345567789999999
Q ss_pred EEEec-CCCEEEEEcCCCcEEEEeccCCCC---------------cEEEEEeecCccceeEEEEEe---CCeEEEeeCCC
Q 044557 236 LALSC-DGSVLYSGACDRSIIVWEKEEDDG---------------NILVVGALRGHTKSILCMAVV---SDLVCSGSADK 296 (362)
Q Consensus 236 i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~---------------~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D~ 296 (362)
|.|+| +...|+++|.|.+|.+||+.-... ..+++-...| .+.+..+.|. +.+++|.+.||
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhheeccCCCCeEEEecccc
Confidence 99999 456888999999999999753211 0111111111 3446667775 56899999997
Q ss_pred cEEEee
Q 044557 297 TIRIWR 302 (362)
Q Consensus 297 ~i~~W~ 302 (362)
+.||+
T Consensus 432 -fnVfk 436 (440)
T KOG0302|consen 432 -FNVFK 436 (440)
T ss_pred -eeEEE
Confidence 45554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=169.53 Aligned_cols=212 Identities=20% Similarity=0.315 Sum_probs=160.3
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce----EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEE
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK----CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVW 211 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw 211 (362)
.+.+|+..|.++++.|.|-.|++||-|-+|++||+.... ..+.++......|+++.|++.|. ++..+..-..+|+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence 346788899999999999999999999999999987532 33444445566899999999886 7777888889999
Q ss_pred eCCCCCCccee---------ehhhhccccceeEEEEecCC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc--cee
Q 044557 212 RRSPGNKKHSL---------VDVLERHNSGINALALSCDG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT--KSI 279 (362)
Q Consensus 212 ~~~~~~~~~~~---------~~~~~~h~~~v~~i~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~--~~v 279 (362)
|.+... ...+ ....++|...+++.+|+|+. ..+++++.||++|+|++........++....... -.+
T Consensus 242 DRdG~~-~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 242 DRDGFE-IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred ccCCce-eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 875322 1111 12346799999999999976 4788999999999999987655555544433333 345
Q ss_pred EEEEEeCC--eEEEeeCCCcEEEeeCCCCce-eeeeEecCCCC--cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 280 LCMAVVSD--LVCSGSADKTIRIWRGIDRNY-TCLAVLEGHRG--PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 280 ~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~-~~~~~l~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
+.++|+++ .||+|..||.|.+|+.....- .....-.+|.. .|++++|+++++ +|+|=|.|.++|+|
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~---------~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN---------YLLSRGFDDTLKVW 391 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc---------hhhhccCCCceeee
Confidence 78888754 899999999999999532211 11233457877 999999987764 58899999999999
Q ss_pred eccc
Q 044557 355 QISF 358 (362)
Q Consensus 355 ~~~~ 358 (362)
|+..
T Consensus 392 DLrq 395 (641)
T KOG0772|consen 392 DLRQ 395 (641)
T ss_pred eccc
Confidence 9964
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=153.59 Aligned_cols=211 Identities=19% Similarity=0.353 Sum_probs=155.9
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCC----ceEEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEe
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD----FKCLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWR 212 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~----~~~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~ 212 (362)
+|.+-|.++.|++.|+.+|+|+.|++|+|||.++ +.+-..+. .|.+.|..|.|.+. |+ +++++.|++++||.
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 5778899999999999999999999999999643 34545554 79999999999654 45 78999999999996
Q ss_pred CCCCCCc-----ceeehhhhccccceeEEEEec--CCCEEEEEcCCCcEEEEeccCCCC--cEEEEE-------eecCcc
Q 044557 213 RSPGNKK-----HSLVDVLERHNSGINALALSC--DGSVLYSGACDRSIIVWEKEEDDG--NILVVG-------ALRGHT 276 (362)
Q Consensus 213 ~~~~~~~-----~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~-------~~~~h~ 276 (362)
-...... -.....+......|+.|.|+| -|-.|++++.||.+|+|+..+.-. ...+.. ....+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 4221111 111223445678899999999 477899999999999999754211 011111 112355
Q ss_pred ceeEEEEEeCC-----eEEEeeCC-----CcEEEeeCCC--CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEe
Q 044557 277 KSILCMAVVSD-----LVCSGSAD-----KTIRIWRGID--RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCS 344 (362)
Q Consensus 277 ~~v~~~~~~~~-----~~~s~s~D-----~~i~~W~~~~--~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 344 (362)
.+..|+.|++. +|+.|+.+ +.++||...+ ++...+.+|.+|..+|.+++|.|+-.+ .-++||+
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr-----~y~~lAv 244 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR-----SYHLLAV 244 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC-----ceeeEEE
Confidence 66778888643 67777765 4788997533 456667789999999999999998543 2368999
Q ss_pred cCCCCcEEEEecc
Q 044557 345 GSLDCDIKVWQIS 357 (362)
Q Consensus 345 ~s~D~~i~~W~~~ 357 (362)
|+.|| |+||++.
T Consensus 245 A~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 245 ATKDG-VRIFKVK 256 (361)
T ss_pred eecCc-EEEEEEe
Confidence 99999 9999985
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-20 Score=149.47 Aligned_cols=263 Identities=19% Similarity=0.252 Sum_probs=176.8
Q ss_pred ceeEEeecceeEEEEEc---CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeE
Q 044557 61 NNIVAVGKGAVKSLVVL---ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCT 137 (362)
Q Consensus 61 ~~~~~~~~~~v~~i~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (362)
..+...|.+.|.++.+. +.++++|+.||.|.+||+++......... +.... +. +. ...
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k~~--------c~-------v~---~~h 96 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAKHK--------CI-------VA---KQH 96 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eehee--------ee-------cc---ccC
Confidence 44455566777777653 45799999999999999976432110000 00000 00 00 001
Q ss_pred EeeecCceeEEEEec-CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC---c-EEEEeCCCeEEEEe
Q 044557 138 WVHHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG---D-VYTGSADKKIKVWR 212 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~---~-~~s~~~dg~i~iw~ 212 (362)
...|...|.++.|-| |...|.++|.|.++++||.++.+....+. .++.|.+-+++|-. - +++|..|-.|++-|
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 135778888887766 56688899999999999999988766664 45678888888743 2 56777888999999
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCC-EEEEEcCCCcEEEEeccCCCCcEE-----------EEEeecCccceeE
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKEEDDGNIL-----------VVGALRGHTKSIL 280 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~d~~i~~wd~~~~~~~~~-----------~~~~~~~h~~~v~ 280 (362)
+.++.. ...+.+|...|-++.|+|... .|++||.||.||+||++...+.+. .+.+-..|.+.|.
T Consensus 175 i~SGs~----sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 175 IASGSF----SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred ccCCcc----eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee
Confidence 998854 456689999999999999766 577999999999999875433222 1223346788899
Q ss_pred EEEEeCC--eEEEeeCCCcEEEeeCCCCceeee---------------eEecCCCCcEEEEEeeecCCccCCCCCceEEE
Q 044557 281 CMAVVSD--LVCSGSADKTIRIWRGIDRNYTCL---------------AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC 343 (362)
Q Consensus 281 ~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~---------------~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 343 (362)
.++|..+ ++++.+.|..+++|+.......+. ..-.+|.+.+.- . .++++-.|.
T Consensus 251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~---~-------p~~~~lall 320 (397)
T KOG4283|consen 251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVL---F-------PNDGSLALL 320 (397)
T ss_pred eeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEE---E-------ecCCeEEEE
Confidence 9998654 899999999999998543211110 011233332221 1 234445677
Q ss_pred ecCCCCcEEEEeccc
Q 044557 344 SGSLDCDIKVWQISF 358 (362)
Q Consensus 344 s~s~D~~i~~W~~~~ 358 (362)
+...-..||.|+..+
T Consensus 321 ~~~sgs~ir~l~~h~ 335 (397)
T KOG4283|consen 321 NLLEGSFVRRLSTHL 335 (397)
T ss_pred EccCceEEEeeeccc
Confidence 777777899998753
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=163.25 Aligned_cols=219 Identities=24% Similarity=0.391 Sum_probs=167.8
Q ss_pred cceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
.+++.++...++ +++.++..|.|.+|.+.++... +.+..|-..|
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL----------------------------------~v~~aHYQ~I 126 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL----------------------------------NVLSAHYQSI 126 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHH----------------------------------HHHHhhccce
Confidence 456777766554 3555668999999998766421 1123577899
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCC---------ceEEEeeeccCcccEEEEEEcCCC---cEEEEeCCCeEEEEeC
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSD---------FKCLESITNAHDDAINAVALSDDG---DVYTGSADKKIKVWRR 213 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~---------~~~~~~~~~~h~~~v~~v~~~~~~---~~~s~~~dg~i~iw~~ 213 (362)
+|+.|+.|+.+|+|||.||.|.+|.+.+ .+.+..+. .|+-+|+++...+.| +++|++.|.++|+||+
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 9999999999999999999999998632 23455554 799999999987664 5999999999999999
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC------------CcEEEEEeecCccc--ee
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD------------GNILVVGALRGHTK--SI 279 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~------------~~~~~~~~~~~h~~--~v 279 (362)
..+....+. ..+.++.+++++|.+..++.|+.+|.|.+.++..-. ........+.||.+ .|
T Consensus 206 S~g~LLlti-----~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 206 SLGVLLLTI-----TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred ccceeeEEE-----ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 887543332 246789999999999999999999999887764322 11223455778988 89
Q ss_pred EEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeee
Q 044557 280 LCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI 328 (362)
Q Consensus 280 ~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~ 328 (362)
+|++.+ +.++++|++||.|.+||... -++++++.--.++|+.+.+.|
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S--~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYS--KQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecch--HHHHHHHhhhccccceeEeec
Confidence 999886 45999999999999999644 356777665677888888844
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-19 Score=166.28 Aligned_cols=193 Identities=22% Similarity=0.244 Sum_probs=157.2
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEee--eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI--TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
..+++++.++-|++.+.|+..|.|-+|+++++-....+ ...|..+|..++...-++ +++++.+|.++.||.......
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 46889999999999999999999999999999777666 357999999999987776 889999999999998765422
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCc
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKT 297 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~ 297 (362)
.+ +. -..+++.+..+.....++.+..|-.|+++|..+. .++..+.||+++|++++|+++ .+++++.|++
T Consensus 529 ~~----l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~----kvvR~f~gh~nritd~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 529 KS----LR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR----KVVREFWGHGNRITDMTFSPDGRWLISASMDST 599 (910)
T ss_pred ee----ec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhh----hhhHHhhccccceeeeEeCCCCcEEEEeecCCc
Confidence 22 21 2456778888888889999999999999998753 256778999999999999876 8999999999
Q ss_pred EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCC-cEEEEec
Q 044557 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC-DIKVWQI 356 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~-~i~~W~~ 356 (362)
||+||+. .+.++..+. -..+...+.|+|+++ +||++..|. -|.+|--
T Consensus 600 Ir~wDlp--t~~lID~~~-vd~~~~sls~SPngD---------~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 600 IRTWDLP--TGTLIDGLL-VDSPCTSLSFSPNGD---------FLATVHVDQNGIYLWSN 647 (910)
T ss_pred EEEEecc--CcceeeeEe-cCCcceeeEECCCCC---------EEEEEEecCceEEEEEc
Confidence 9999964 345555443 466778889987654 799998884 4999953
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-19 Score=154.42 Aligned_cols=320 Identities=19% Similarity=0.317 Sum_probs=201.9
Q ss_pred eeecccCccceeeeEecCc--EEEEecCCC--------eEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---
Q 044557 12 LTTLKGHNSYVSSLALAGK--FLYTGSSDN--------EVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--- 78 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~~~--~l~t~s~Dg--------~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--- 78 (362)
-+.+-||+..|.++.+.++ .+++|-.-| .+|+||..+.+. -.++-.....|.+++++.
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---------L~V~g~f~~GV~~vaFsk~~~ 167 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---------LHVIGFFDRGVTCVAFSKING 167 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee---------eeeeccccccceeeeecccCC
Confidence 3456799999999999754 456555545 489999554321 112222345677777753
Q ss_pred -ceeEE--EecCCcEEEEecCCCCCCccc------ceeeeeccCCCchhhh-------hccccccceeeeeeeeEEeeec
Q 044557 79 -DKLFS--AHQDHKIRVWKINNQEPDHQK------YTRLATLPTLGDRAIK-------LLMPKNHVQIRRHKTCTWVHHV 142 (362)
Q Consensus 79 -~~l~s--~~~dg~i~~w~~~~~~~~~~~------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~h~ 142 (362)
..|.. -+.+..+.+||.+.+....+. ......+|.....++. ++........++.-... ....
T Consensus 168 G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fe-k~ek 246 (626)
T KOG2106|consen 168 GSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFE-KREK 246 (626)
T ss_pred CceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccc-cccc
Confidence 12222 245677899998754421111 0111222221111110 11111111111111100 0112
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCccee
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
..|.|++|.++|. +++|..+|.|.||+..+.+..+... +|.+.|.+++...+|.+++|+.|+.|..||-. .++....
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRET 323 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEeecCccceEEecccc-ccccccc
Confidence 5699999999998 5589999999999998877766665 89999999999999999999999999999822 1110000
Q ss_pred -------------------------------------ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC-
Q 044557 223 -------------------------------------VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG- 264 (362)
Q Consensus 223 -------------------------------------~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~- 264 (362)
.....+|......++.+|+...+++++.|+.+++|+-....-
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt 403 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWT 403 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEE
Confidence 011235666777888899999999999999999998211000
Q ss_pred ---------------cEEEEEe-----------------ecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCc--e
Q 044557 265 ---------------NILVVGA-----------------LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRN--Y 308 (362)
Q Consensus 265 ---------------~~~~~~~-----------------~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~--~ 308 (362)
....++. +.....++.+++|+++ ++|.||.|+.|.+|.+.... +
T Consensus 404 ~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence 0011111 1112557888998764 99999999999999865433 3
Q ss_pred eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 309 TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 309 ~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
..+....| ++|+.+.|++++ ++|.+-|.|-.|-.|.
T Consensus 484 ~r~~k~~g--s~ithLDwS~Ds---------~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 484 SRVGKCSG--SPITHLDWSSDS---------QFLVSNSGDYEILYWK 519 (626)
T ss_pred EEeeeecC--ceeEEeeecCCC---------ceEEeccCceEEEEEc
Confidence 33334444 899999887664 4789999999999994
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=156.91 Aligned_cols=299 Identities=19% Similarity=0.245 Sum_probs=201.4
Q ss_pred ccceeccceeeecccCccceeeeEec---C-cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC
Q 044557 3 NLSVVDHHCLTTLKGHNSYVSSLALA---G-KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA 78 (362)
Q Consensus 3 ~~~~~~~~~~~tl~gH~~~V~~l~~~---~-~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 78 (362)
||-.++.......+-|.+.|++++|. . +.+|+|+.-|.|-+||+.+.+...... .....|.++|.+|.+.+
T Consensus 170 dl~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v-----~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 170 DLDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV-----YLFTPHSGPVSGLKFSP 244 (498)
T ss_pred ccccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce-----EEeccCCccccceEecC
Confidence 55667777788889999999999995 3 689999999999999986432222111 12233567899998875
Q ss_pred ---ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC
Q 044557 79 ---DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET 155 (362)
Q Consensus 79 ---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 155 (362)
+.+++.++||+|++=|++..... .+. ..+ .-...+..+.|+.+..
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~i~e-----~v~-------------s~~--------------~d~~~fs~~d~~~e~~ 292 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGNISE-----EVL-------------SLD--------------TDNIWFSSLDFSAESR 292 (498)
T ss_pred CChhheeeeccCceeeeeeecchhhH-----HHh-------------hcC--------------ccceeeeeccccCCCc
Confidence 46999999999999998653210 000 000 0012345667777777
Q ss_pred EEEEEECCCcEEEEECCCceE-EEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcce-eehhhhcccc
Q 044557 156 LLYSVSWDRTIKIWRTSDFKC-LESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHS-LVDVLERHNS 231 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~~~~-~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~-~~~~~~~h~~ 231 (362)
.++.+..=|.+.+||.+.... ...+ ..|...|.+|+++|-.. ++|++.|++.+|||+..-..+.+ ++.. -.|..
T Consensus 293 ~vl~~~~~G~f~~iD~R~~~s~~~~~-~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst-~~Hrr 370 (498)
T KOG4328|consen 293 SVLFGDNVGNFNVIDLRTDGSEYENL-RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST-LPHRR 370 (498)
T ss_pred cEEEeecccceEEEEeecCCccchhh-hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec-ccccc
Confidence 777777667999999988664 3333 36888999999999764 89999999999999987655443 3333 35899
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEecc----CCCCcEEEEEeecCccce----e--EEEEEeCC--eEEEeeCCCcEE
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKE----EDDGNILVVGALRGHTKS----I--LCMAVVSD--LVCSGSADKTIR 299 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~~~~~h~~~----v--~~~~~~~~--~~~s~s~D~~i~ 299 (362)
.|.+..|||++..|++.+.|++||+||.. .......+ -|... + ..-.|.++ +++.|-.-+.|-
T Consensus 371 sV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-----~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ID 445 (498)
T KOG4328|consen 371 SVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-----PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPID 445 (498)
T ss_pred eeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-----eccCcccccccchhheeCCCccEEEEeccCccee
Confidence 99999999999889999999999999973 21111111 12221 1 12234444 788888888899
Q ss_pred EeeCCCCceeeeeEecC-CCCcEEEE-EeeecCCccCCCCCce-EEEecCCCCcEEEEec
Q 044557 300 IWRGIDRNYTCLAVLEG-HRGPVKCL-AAAIDNDRCDSSDTSY-LVCSGSLDCDIKVWQI 356 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~-h~~~v~~~-~~~~~~~~~~~~~~~~-~l~s~s~D~~i~~W~~ 356 (362)
+++... .+.+..+.+ -...|.++ +| +|.+. +++.|+.-|.|.||--
T Consensus 446 v~~~~~--~q~v~el~~P~~~tI~~vn~~---------HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 446 VFDGNG--GQMVCELHDPESSTIPSVNEF---------HPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred EEcCCC--CEEeeeccCccccccccceee---------cccccceeccCCccceEEEEec
Confidence 998543 333444422 22234332 23 34445 4555566677888743
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-18 Score=152.65 Aligned_cols=261 Identities=17% Similarity=0.189 Sum_probs=165.8
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--ee-EEEecCCcEEEEecCCCCCCcccce
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KL-FSAHQDHKIRVWKINNQEPDHQKYT 106 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l-~s~~~dg~i~~w~~~~~~~~~~~~~ 106 (362)
+.++|++.|++|++||+.+.. ....+. . ...+..+.+.++ .+ ++++.++.|++||...++..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~--~~~~~~-------~-~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~----- 66 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLE--VTRTFP-------V-GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI----- 66 (300)
T ss_pred cEEEEecCCCEEEEEECCCCc--eEEEEE-------C-CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-----
Confidence 578999999999999986543 111111 1 122345566554 35 45677899999998654310
Q ss_pred eeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE-ECCCcEEEEECCCceEEEeeeccCc
Q 044557 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV-SWDRTIKIWRTSDFKCLESITNAHD 185 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~h~ 185 (362)
..++ .+ ..+..++++|+++.++++ +.|+.|++||+++.+.+..+. +.
T Consensus 67 --~~~~---------------------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~ 114 (300)
T TIGR03866 67 --GTLP---------------------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VG 114 (300)
T ss_pred --Eecc---------------------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CC
Confidence 0000 01 123467899999877654 568999999999887776654 22
Q ss_pred ccEEEEEEcCCCc-EEEEeCCC-eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCC
Q 044557 186 DAINAVALSDDGD-VYTGSADK-KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEED 262 (362)
Q Consensus 186 ~~v~~v~~~~~~~-~~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~ 262 (362)
..+.+++|+|++. +++++.++ .+.+||..++...... .....+..++|+|++++|+.+ ..++.|++||+++.
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV-----LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE-----EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 3467899999998 55565554 5677888765322111 122345778999999988654 46999999999864
Q ss_pred CCcEEEEEeecCc-----cc--eeEEEEEeCC--e-EEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc
Q 044557 263 DGNILVVGALRGH-----TK--SILCMAVVSD--L-VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR 332 (362)
Q Consensus 263 ~~~~~~~~~~~~h-----~~--~v~~~~~~~~--~-~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~ 332 (362)
+. +..+..+ .. ....+.++++ + +++.+.++.|.+|+.. .++.+..+. +...+.+++|+|+++
T Consensus 190 ~~----~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~--~~~~~~~~~-~~~~~~~~~~~~~g~- 261 (300)
T TIGR03866 190 KV----IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK--TYEVLDYLL-VGQRVWQLAFTPDEK- 261 (300)
T ss_pred ee----eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC--CCcEEEEEE-eCCCcceEEECCCCC-
Confidence 32 1112111 11 1234666643 4 4555667789999964 344444442 445789999987653
Q ss_pred cCCCCCceEEEe-cCCCCcEEEEeccc
Q 044557 333 CDSSDTSYLVCS-GSLDCDIKVWQISF 358 (362)
Q Consensus 333 ~~~~~~~~~l~s-~s~D~~i~~W~~~~ 358 (362)
+|++ ++.+++|++||+..
T Consensus 262 --------~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 262 --------YLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred --------EEEEEcCCCCeEEEEECCC
Confidence 3555 46799999999964
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=150.43 Aligned_cols=280 Identities=18% Similarity=0.254 Sum_probs=181.2
Q ss_pred eeeecccCccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC-ceeEEEecCC
Q 044557 11 CLTTLKGHNSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-DKLFSAHQDH 88 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~s~~~dg 88 (362)
....|++|.+.|+++.|. ..+|++|..-|.|++|++.+.......+ ..+...+..+...+ +.+.+-+.|.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r--------~~g~~~it~lq~~p~d~l~tqgRd~ 77 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIR--------LFGRLFITNLQSIPNDSLDTQGRDP 77 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhh--------hhccceeeceeecCCcchhhcCCCc
Confidence 445688999999999995 6789999999999999987643211111 12334555665544 6789999999
Q ss_pred cEEEEecCCCCCCccc--------ceeeeeccCCCchhhhhcccc------------ccceeeeeeeeEEeeecCceeEE
Q 044557 89 KIRVWKINNQEPDHQK--------YTRLATLPTLGDRAIKLLMPK------------NHVQIRRHKTCTWVHHVDAVSAL 148 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~h~~~v~~~ 148 (362)
.+.+|++......... +.+...++......-.+..+. ...++.-... .-....+.++|.
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd-~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD-SERSKLGSVMCQ 156 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc-hhccccCceeee
Confidence 9999998653211000 001111110000000000000 0011110000 011244567777
Q ss_pred EEec-CCC--EEEEEECCCcEEEEECCCceEEEee---------eccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCC
Q 044557 149 ALTK-DET--LLYSVSWDRTIKIWRTSDFKCLESI---------TNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSP 215 (362)
Q Consensus 149 ~~~~-~~~--~l~s~s~d~~i~iwd~~~~~~~~~~---------~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~ 215 (362)
.+.- .++ +|++|-++|.+-+||+.++..+..+ ...|.++|.++.+.+.- +=++|+.+..+.+|.+..
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 6422 232 5677889999999999886322111 23588999999987543 356788888899998765
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEee
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGS 293 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s 293 (362)
......+-......+-+|..+.+-||++.++++|.|++||+|+.++.+ .+..++.|...|.+++|+++ ++|.+|
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~----pLAVLkyHsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN----PLAVLKYHSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC----chhhhhhhhcceeEEEeCCCCchhhhcc
Confidence 422222222222335578899999999999999999999999988644 35567889999999999876 899999
Q ss_pred CCCcEEEeeC
Q 044557 294 ADKTIRIWRG 303 (362)
Q Consensus 294 ~D~~i~~W~~ 303 (362)
.|+.|-+|++
T Consensus 313 kD~rISLWkL 322 (323)
T KOG0322|consen 313 KDARISLWKL 322 (323)
T ss_pred CCceEEeeec
Confidence 9999999984
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-20 Score=159.28 Aligned_cols=236 Identities=20% Similarity=0.353 Sum_probs=168.1
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeec------------cceeEEeecceeEEEEEcC---ceeEEEecCCcEEEE
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLS------------NNNIVAVGKGAVKSLVVLA---DKLFSAHQDHKIRVW 93 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~------------~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~w 93 (362)
|+|+|.|..|..|.|||+.-.....+.-..+ .......|...|.++.+.. +-|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 5799999999999999975422211111111 0111123444455555443 459999999999999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCcEEEEECC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~ 172 (362)
|+..+.+.. ++.+|.+.|.+++|+|.. .+|++||.|++|++.|.+
T Consensus 272 D~~~g~p~~----------------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 272 DVDTGKPKS----------------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred EcCCCCcce----------------------------------ehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 998876421 112578899999998864 689999999999999998
Q ss_pred CceEE-EeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-CCEEEEE
Q 044557 173 DFKCL-ESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD-GSVLYSG 248 (362)
Q Consensus 173 ~~~~~-~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~ 248 (362)
..... ..+ ...+.|..++|.|... ++++..||+|+-+|.+... ..+..++.|..+|.+|++++. ..+++++
T Consensus 318 ~~~~s~~~w--k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 318 DPSNSGKEW--KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred CccccCceE--EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeec
Confidence 53322 222 2456789999998764 7788999999999998654 345567789999999999874 4678999
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCC
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~ 305 (362)
|.|+.|++|++...+........+ -.+...|+++.++ .++.|+..+.+++|+...
T Consensus 393 s~d~~Vklw~~~~~~~~~v~~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDSPKSVKEHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred cccceEEEEeecCCCCcccccccc--cccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 999999999987655433222111 1233567777665 688889888999999643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=162.28 Aligned_cols=241 Identities=18% Similarity=0.292 Sum_probs=175.6
Q ss_pred cceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
-..|.++.++. ..+|+|+ -|.|++||+....... . +..++. +.-..-|
T Consensus 419 GEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~-P---vsqLdc-------------------------l~rdnyi 468 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKS-P---VSQLDC-------------------------LNRDNYI 468 (705)
T ss_pred CcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCC-c---cccccc-------------------------cCcccce
Confidence 34555555553 3477777 5679999996543211 1 111111 0112347
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec-cCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN-AHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
+++...|||+.|++|++-.++.|||+.......+... ...-....++++||.+ .+++..||.|.|||+.+. .+.
T Consensus 469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~V 544 (705)
T KOG0639|consen 469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLV 544 (705)
T ss_pred eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eee
Confidence 8889999999999999999999999987653222211 1122456688899988 679999999999999764 567
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEe
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIW 301 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W 301 (362)
..+++|..++.||.+++||..|.+||.|++||.||+++..... . ..-...|.++.+++ +.++.|=+.+.+.+-
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq----q-hdF~SQIfSLg~cP~~dWlavGMens~vevl 619 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ----Q-HDFSSQIFSLGYCPTGDWLAVGMENSNVEVL 619 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh----h-hhhhhhheecccCCCccceeeecccCcEEEE
Confidence 7889999999999999999999999999999999998754211 0 11245688887764 589999999999887
Q ss_pred eCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 302 RGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 302 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.... .....+.-|.+.|.++.|.+- |++++|.+.|..+..|...|-
T Consensus 620 h~sk---p~kyqlhlheScVLSlKFa~c---------GkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 620 HTSK---PEKYQLHLHESCVLSLKFAYC---------GKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred ecCC---ccceeecccccEEEEEEeccc---------CceeeecCchhhhhhccCccc
Confidence 6432 223457789999999999754 457889999999999988663
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=156.91 Aligned_cols=243 Identities=19% Similarity=0.270 Sum_probs=181.2
Q ss_pred cceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee-ecCc
Q 044557 68 KGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH-HVDA 144 (362)
Q Consensus 68 ~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~ 144 (362)
...+.+++++. +.|+.+-.||.|.+|++...-.. . ..+.+ ....
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~----~-----------------------------~vi~g~~drs 71 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL----E-----------------------------PVIHGPEDRS 71 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCcee----e-----------------------------EEEecCCCCc
Confidence 45677887764 45888999999999998642100 0 01111 2346
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
|.+++|++. ..|.+.+.+|.|.-||+.+.+....+. ...++|++++.+|.+. ++.|+.||.+..++..++.. +..
T Consensus 72 IE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I--~~~ 147 (691)
T KOG2048|consen 72 IESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI--TYK 147 (691)
T ss_pred eeeEEEccC-CeEEeecCCceEEEEecccCceeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceE--EEE
Confidence 889999954 557788889999999999998877665 5678999999999987 77788999777777665542 233
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC----ccceeEEEEE-eCCeEEEeeCCCcE
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG----HTKSILCMAV-VSDLVCSGSADKTI 298 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~----h~~~v~~~~~-~~~~~~s~s~D~~i 298 (362)
..+..-.+.|.+++|+|++..|++|+.||.|++||...+.........+.+ ...-|.++.+ ..+.+++|..-|+|
T Consensus 148 r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V 227 (691)
T KOG2048|consen 148 RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTV 227 (691)
T ss_pred eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceE
Confidence 344455689999999999999999999999999999876544322222222 2223566665 45699999999999
Q ss_pred EEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 299 RIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++||. ..+.+++....|...|.+++..++++ .+.+++-|+.|..+....
T Consensus 228 ~FWd~--~~gTLiqS~~~h~adVl~Lav~~~~d---------~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 228 TFWDS--IFGTLIQSHSCHDADVLALAVADNED---------RVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred EEEcc--cCcchhhhhhhhhcceeEEEEcCCCC---------eEEEccCCCceEEEEecC
Confidence 99995 34677888889999999999976654 488999999988776643
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=161.03 Aligned_cols=246 Identities=18% Similarity=0.233 Sum_probs=165.4
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS 159 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 159 (362)
.|+.+..||.|.++|.....-. ........+..|...|..+.+.|....|++
T Consensus 66 iLavadE~G~i~l~dt~~~~fr----------------------------~ee~~lk~~~aH~nAifDl~wapge~~lVs 117 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFR----------------------------LEERQLKKPLAHKNAIFDLKWAPGESLLVS 117 (720)
T ss_pred eEEEecCCCceeeecchhhhcc----------------------------hhhhhhcccccccceeEeeccCCCceeEEE
Confidence 4888999999999987543210 000111233568999999999997778999
Q ss_pred EECCCcEEEEECCCceEEEe-eeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCC------------------
Q 044557 160 VSWDRTIKIWRTSDFKCLES-ITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNK------------------ 218 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~-~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~------------------ 218 (362)
++.|.++++||+++.++... +..+|+..|.++||.|... |++|+.||.|.|||+.....
T Consensus 118 asGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 118 ASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred ccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 99999999999999887654 3458999999999999875 88999999999999753210
Q ss_pred -----cceeehhhhccccceeE---EEEecCCCEEEEEcC-CCcEEEEeccCCCCcEE----EEEeecCc---cceeEEE
Q 044557 219 -----KHSLVDVLERHNSGINA---LALSCDGSVLYSGAC-DRSIIVWEKEEDDGNIL----VVGALRGH---TKSILCM 282 (362)
Q Consensus 219 -----~~~~~~~~~~h~~~v~~---i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~----~~~~~~~h---~~~v~~~ 282 (362)
..+-+..-..+...|.+ +.+..|...|+++|. |+.|++||++....... ....+..| ...+.++
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence 00001112234445555 566679999999998 99999999986432211 11112223 1234455
Q ss_pred EEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 283 AVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 283 ~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
..+ +.++.....|+.|.+|++......+++.+.||...-.-+.- .-.+++.+|+||++|....+|.+..|-
T Consensus 278 ~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-------~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 278 ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-------ELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeee-------ecCCCCceEeccCCCcceeeeeecCcc
Confidence 443 45544444499999999755444555666666432221111 123456789999999999999997764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=161.67 Aligned_cols=241 Identities=17% Similarity=0.245 Sum_probs=172.9
Q ss_pred ecceeEEEEEc--CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 67 GKGAVKSLVVL--ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 67 ~~~~v~~i~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
|....+.+.+. ++.|++++.||.|++|+.......... ...+...
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t---------------------------------i~~~g~~ 58 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET---------------------------------IDISGEL 58 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch---------------------------------hhccCce
Confidence 34444555554 456999999999999987643211000 0013345
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
|.+++. ++++|++|+.+++|.+|.+.+++.-.-+. ..+-++++++++.+|. ++.|+.|-.|++-+..+... .
T Consensus 59 v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~-Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~----~ 131 (933)
T KOG1274|consen 59 VSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILA-RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ----E 131 (933)
T ss_pred eEEEee--cccceEEeeccceEEEeeCCCCCccceee-eeeccceEEEEecCCcEEEeecCceeEEEEeccccch----h
Confidence 556554 45689999999999999998876533232 3566899999999997 77889999999999887653 3
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec---Cc-cceeEEEEEeCC--eEEEeeCCCc
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR---GH-TKSILCMAVVSD--LVCSGSADKT 297 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~h-~~~v~~~~~~~~--~~~s~s~D~~ 297 (362)
..+.+|.++|.++.|+|++.+||+.+.||.|++|++.+......+....+ .. ...+..++|+|+ .++....|+.
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 35678999999999999999999999999999999986432221111111 11 223455678765 7889999999
Q ss_pred EEEeeCCCCceeeeeEec--CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 298 IRIWRGIDRNYTCLAVLE--GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|++|+.. .+.....|. -|++.+..++|+|. |.|||+++.||.|.|||+..
T Consensus 212 Vkvy~r~--~we~~f~Lr~~~~ss~~~~~~wsPn---------G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 212 VKVYSRK--GWELQFKLRDKLSSSKFSDLQWSPN---------GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEccC--CceeheeecccccccceEEEEEcCC---------CcEEeeeccCCcEEEEeccc
Confidence 9999843 344444443 34555899988765 46899999999999999974
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-20 Score=161.55 Aligned_cols=212 Identities=25% Similarity=0.423 Sum_probs=160.9
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC--------ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCe
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD--------FKCLESITNAHDDAINAVALSDDGD-VYTGSADKK 207 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--------~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~ 207 (362)
+...|.+-|+.++|+|....|++++.|++|++|+++. .+++.++. +|.++|.|+++++++. +++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccCce
Confidence 5567889999999999999999999999999999932 23455664 8999999999999987 999999999
Q ss_pred EEEEeCC------CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcE----------EEEE-
Q 044557 208 IKVWRRS------PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI----------LVVG- 270 (362)
Q Consensus 208 i~iw~~~------~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~----------~~~~- 270 (362)
|+.|++. +......+...+.+|...|+.+++|+....|++++.||++|.|+........ ..+.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 9999543 2222334556778999999999999999999999999999999854322200 0000
Q ss_pred -----------------------------eecC--cc-----ceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeee
Q 044557 271 -----------------------------ALRG--HT-----KSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 271 -----------------------------~~~~--h~-----~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
.+.. -. ..+..+-.. .++.+++.+|+.|++++. ..+..++
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn--~~~~~l~ 525 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN--KTGKILH 525 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc--cccccch
Confidence 0000 00 011112221 247889999999999984 4567788
Q ss_pred EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 313 VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 313 ~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
....|...|+++++.|++ .+|++|+.||.+++|++..++
T Consensus 526 s~~a~~~svtslai~~ng---------~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNG---------PYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred heeeccceecceeecCCC---------ceEEeecCCceeehhhccchh
Confidence 889999999999997654 469999999999999996554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=149.01 Aligned_cols=287 Identities=12% Similarity=0.228 Sum_probs=198.5
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc---eeEEEecCCcEEE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD---KLFSAHQDHKIRV 92 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~l~s~~~dg~i~~ 92 (362)
-.+.|++|.|. ...+++|+.|+++++|.+.....++.+ .+....-++.+..+.++ .+++++.-..+..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lq-------S~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQ-------SIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhhe-------eeeeccCccceeeecCCCceEEEecccceEEEE
Confidence 36789999996 468999999999999987653322211 12223446666666543 5888898899999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee-cCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH-VDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
||+...+.. ++... .++ ...+....+++++++|+..|..|.|.+--.
T Consensus 285 yDle~ak~~-----k~~~~---------------------------~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha 332 (514)
T KOG2055|consen 285 YDLETAKVT-----KLKPP---------------------------YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA 332 (514)
T ss_pred eeccccccc-----cccCC---------------------------CCcccchhheeEecCCCCeEEEcccCceEEeehh
Confidence 999754421 11000 011 123455677999999999999999999998
Q ss_pred CCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC
Q 044557 172 SDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~ 250 (362)
.+++.+..+. -.+.|..++|+.+++ +++++.+|.|.+||+............ ..-.-++++.+++|.+||+|+.
T Consensus 333 kT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~---G~v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 333 KTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD---GSVHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred hhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec---CccceeeeeecCCCceEEeccC
Confidence 8888877765 357899999998887 888899999999999876443333221 1112357788899999999999
Q ss_pred CCcEEEEeccCC--CCcEEEEEeecCccceeEEEEEeCC--e--EEEeeCCCcEEEeeCCCCc-eeeeeEecCCCCcEEE
Q 044557 251 DRSIIVWEKEED--DGNILVVGALRGHTKSILCMAVVSD--L--VCSGSADKTIRIWRGIDRN-YTCLAVLEGHRGPVKC 323 (362)
Q Consensus 251 d~~i~~wd~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~--~--~~s~s~D~~i~~W~~~~~~-~~~~~~l~~h~~~v~~ 323 (362)
.|.|.|||..+. ......+.++..-+-.|.++.|+++ + ++|-..+..+|+=.+..-+ +....+...--..|+|
T Consensus 408 ~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc 487 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTC 487 (514)
T ss_pred cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEE
Confidence 999999996532 1122234445555667889999876 3 4555567888887532100 0001112334556999
Q ss_pred EEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 324 LAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++|+|.+. +||.|-.+|.+.+|.+.
T Consensus 488 ~aFSP~sG---------~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 488 MAFSPNSG---------YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEecCCCc---------eEEeecCCCceeeEeec
Confidence 99988643 69999999999999984
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=142.80 Aligned_cols=195 Identities=19% Similarity=0.278 Sum_probs=148.2
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC---cEEEEeCCCeEEEEeC
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG---DVYTGSADKKIKVWRR 213 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~~s~~~dg~i~iw~~ 213 (362)
.+..|.+.+++++.+ +.++|+||.|-+|+|||++....+..+. .|.+.|+++.|.++- .|++|+.||.|.+|+.
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 345689999999985 7899999999999999999988888775 689999999998765 5999999999999998
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEE
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCS 291 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s 291 (362)
.+. .+...++.|...|+.++++|.|+.-++-+.|+.++.|++..++.... ..++ +.... +.|+ +++++.
T Consensus 115 ~~W----~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v--~~L~-~~at~--v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 115 GSW----ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV--LNLK-NKATL--VSWSPQGDHFVV 185 (362)
T ss_pred CCe----EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee--eccC-Cccee--eEEcCCCCEEEE
Confidence 765 35667788999999999999999999999999999999987654332 2232 22222 4454 567777
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++.+ .|-+|..... .....+. ....+.++-|- .+..|++|++|+.|++||.+
T Consensus 186 ~~~~-~i~i~q~d~A--~v~~~i~-~~~r~l~~~~l----------~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 186 SGRN-KIDIYQLDNA--SVFREIE-NPKRILCATFL----------DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred Eecc-EEEEEecccH--hHhhhhh-ccccceeeeec----------CCceEEEecCCceEEEeccC
Confidence 6665 5889975332 1222222 12345555552 23468899999999999985
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=151.61 Aligned_cols=259 Identities=14% Similarity=0.153 Sum_probs=188.5
Q ss_pred eeeeEecC-cEEE--EecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEecCCcEEEEecC
Q 044557 22 VSSLALAG-KFLY--TGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 22 V~~l~~~~-~~l~--t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~~dg~i~~w~~~ 96 (362)
+.++.|.. ++|+ +.+.|..|++|.-.....+.+.. -...-..-.|+... .-++++++..+.|++||++
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~-------~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~ 109 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV-------RKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLR 109 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCcccee-------eccccchHHHHhhhhcceeeeccCcCceeeehhhH
Confidence 77778853 3354 44568899999754432211100 00000112222221 2468899999999999986
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceE
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 176 (362)
..... ..+..|+..|+++.++....+||+++..|.|.|..+.++..
T Consensus 110 ~kl~h----------------------------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 110 AKLIH----------------------------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred HHHHh----------------------------------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 32100 00135889999999999999999999999999999998877
Q ss_pred EEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-CCEEEEEcCCCc
Q 044557 177 LESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD-GSVLYSGACDRS 253 (362)
Q Consensus 177 ~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~~~d~~ 253 (362)
-..+..+..+.|.-+.|+|..+ |.+++.+|.|.+||+....+. ......|..|...|+|+|. ...|++-|.|..
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk 232 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FHASEAHSAPCRGICFSPSNEALLVSVGYDKK 232 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---cchhhhccCCcCcceecCCccceEEEecccce
Confidence 6777666667888999999886 568899999999999765543 3456679999999999995 467889999999
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
|.+||.......-. +. -..+...++|.++ +|+.|+..|.|..||+.. ...+++++..|...|++++|.+..
T Consensus 233 i~~yD~~s~~s~~~----l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~-~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 233 INIYDIRSQASTDR----LT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS-TKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEeecccccccce----ee-ecCCcceeeecCCceEEEeecCCceEEEEeccc-CCCCceEeeecccceeEEEeeecc
Confidence 99999875432211 11 1334677888754 899999999999999754 346789999999999999999874
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-19 Score=151.54 Aligned_cols=204 Identities=18% Similarity=0.210 Sum_probs=154.1
Q ss_pred eeecCceeEEEEecCC--CEEEEEECCCcEEEEECCCce----EEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEE
Q 044557 139 VHHVDAVSALALTKDE--TLLYSVSWDRTIKIWRTSDFK----CLESITNAHDDAINAVALSDDG--DVYTGSADKKIKV 210 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~i 210 (362)
..+.++|.+++|+|.. +++|+|..-|.|-+||+...+ -+. +-..|.++|.++.|+|.+ ++++.++||+|+.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~-~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY-LFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE-EeccCCccccceEecCCChhheeeeccCceeee
Confidence 4578899999999965 478888899999999995221 122 234799999999999976 4999999999999
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---C
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---D 287 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~ 287 (362)
-|++.... .....+..-...+..+.|+.+...++.+..=|...+||++.+..+. ..+.-|...|..+++.| .
T Consensus 262 ~D~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~---~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 262 QDFEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY---ENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeecchhh--HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc---hhhhhhhcccceeecCCCCch
Confidence 99876421 1111222234567778888888888888888899999998765433 34556888999999865 4
Q ss_pred eEEEeeCCCcEEEeeCCCCcee--eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 288 LVCSGSADKTIRIWRGIDRNYT--CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+++|+|.|++.+|||...-..+ ++-....|+..|.++.|+|++. . |++.+.|+.|||||..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g--------t-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG--------T-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC--------c-eEeeccCCceEEeecc
Confidence 8999999999999996421111 1222346999999999998653 3 8899999999999983
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=138.81 Aligned_cols=297 Identities=16% Similarity=0.277 Sum_probs=195.3
Q ss_pred cceeeec-ccCccceeeeEec-------CcEEEEecCCCeEEEeecCCCCccc-ceeeeccceeEEeecceeEEE----E
Q 044557 9 HHCLTTL-KGHNSYVSSLALA-------GKFLYTGSSDNEVRSWDCNTFSSEL-DQEFLSNNNIVAVGKGAVKSL----V 75 (362)
Q Consensus 9 ~~~~~tl-~gH~~~V~~l~~~-------~~~l~t~s~Dg~i~vWd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i----~ 75 (362)
+++...+ +.|+.+|..+.|. .+.++|.|. .++-+++........ .+.+... .+....... .
T Consensus 27 yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~-----d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 27 YKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADE-----DHDESFYTCSWSYD 100 (385)
T ss_pred eEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCC-----CCCcceEEEEEEec
Confidence 4455444 5689999999984 245676655 566677765432110 0111000 011111111 1
Q ss_pred Ec-Cc-eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC
Q 044557 76 VL-AD-KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD 153 (362)
Q Consensus 76 ~~-~~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 153 (362)
.. ++ .++.++.-|.|++.|+...... ..+.+|...|..+.+.|+
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~----------------------------------~~~~ghG~sINeik~~p~ 146 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCS----------------------------------KNYRGHGGSINEIKFHPD 146 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhc----------------------------------cceeccCccchhhhcCCC
Confidence 12 12 4778888999999988654311 123478899999999997
Q ss_pred C-CEEEEEECCCcEEEEECCCceEEEee--eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee-------
Q 044557 154 E-TLLYSVSWDRTIKIWRTSDFKCLESI--TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL------- 222 (362)
Q Consensus 154 ~-~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~------- 222 (362)
. ++++++|.|..||+|++++..|+..+ ..+|.+.|.++.|+++|. +++++.|..+++|++...+....+
T Consensus 147 ~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 147 RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 5 68999999999999999999988765 247999999999999986 899999999999998732110000
Q ss_pred -----------------ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC----------CCCcEEEEEeecCc
Q 044557 223 -----------------VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE----------DDGNILVVGALRGH 275 (362)
Q Consensus 223 -----------------~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~----------~~~~~~~~~~~~~h 275 (362)
.....-|...|.|+.|- |.++++=|.++.|.+|..-. ++....+++.++-.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~ 304 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP 304 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence 01223467777777775 58999999999999997511 12223345555555
Q ss_pred cceeEEEEEe----CCeEEEeeCCCcEEEeeCCCCceeeeeEecCC--CCcEEEEEeeecCCccCCCCCceEEEecCCCC
Q 044557 276 TKSILCMAVV----SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGH--RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC 349 (362)
Q Consensus 276 ~~~v~~~~~~----~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~ 349 (362)
...+.-+.|. .++++.|.+-|.|.+|++.........++..+ ...|...+|+.++ .+|+...+|+
T Consensus 305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg---------s~lv~vcdd~ 375 (385)
T KOG1034|consen 305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG---------SILVLVCDDG 375 (385)
T ss_pred ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC---------cEEEEEeCCC
Confidence 5566666654 34899999999999999754333223334322 3456666776443 4677777899
Q ss_pred cEEEEec
Q 044557 350 DIKVWQI 356 (362)
Q Consensus 350 ~i~~W~~ 356 (362)
+|--||.
T Consensus 376 ~Vwrwdr 382 (385)
T KOG1034|consen 376 TVWRWDR 382 (385)
T ss_pred cEEEEEe
Confidence 9988875
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-16 Score=126.68 Aligned_cols=248 Identities=19% Similarity=0.289 Sum_probs=167.5
Q ss_pred eeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeE--EeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCC
Q 044557 24 SLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIV--AVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPD 101 (362)
Q Consensus 24 ~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~ 101 (362)
+++..+++|+.|+.+|+|-+..++....... +..+...++ ..|.+++..+.+..+.|++++ ||.|+-|..+.....
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa-~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~E~~es 94 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-EPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWNEEEES 94 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhcccc-CCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeehhhhhh
Confidence 3445678999999999999999875321111 111111222 356789999999877787777 699999987654321
Q ss_pred cccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeee
Q 044557 102 HQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT 181 (362)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 181 (362)
... ..+- ....|.. . . .-.-..|++|...|..+-++.++.|+.+.-||+++++..+.+.
T Consensus 95 ~~~-K~lw----------e~~~P~~-~------~---~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 95 LAT-KRLW----------EVKIPMQ-V------D---AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred ccc-hhhh----------hhcCccc-c------C---cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence 000 0000 0000000 0 0 0012357889999888877777899999999999999888775
Q ss_pred ccCcccEEEEEE-cCCCcEEEEeCCCeEEEEeCCCCCCcceeeh-----hhhccc-cceeEEEEecCCCEEEEEcCCCcE
Q 044557 182 NAHDDAINAVAL-SDDGDVYTGSADKKIKVWRRSPGNKKHSLVD-----VLERHN-SGINALALSCDGSVLYSGACDRSI 254 (362)
Q Consensus 182 ~~h~~~v~~v~~-~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~-----~~~~h~-~~v~~i~~s~~~~~l~s~~~d~~i 254 (362)
+|++.+.+++- +..+++++|++||++|+||..+++..+.+.. .+..|. ..|-+++. +...|++|+. ..+
T Consensus 154 -GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~l 229 (325)
T KOG0649|consen 154 -GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKL 229 (325)
T ss_pred -CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-Cce
Confidence 99999999987 6778899999999999999998875543321 111222 23445544 5568877764 468
Q ss_pred EEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeC
Q 044557 255 IVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 255 ~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~ 303 (362)
.+|.+++.+.. .+-.+++| +..+.|..+.++++++.+.|.-|..
T Consensus 230 slwhLrsse~t--~vfpipa~---v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 230 SLWHLRSSEST--CVFPIPAR---VHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred eEEeccCCCce--EEEecccc---eeEeeeecceEEEeccccceeeeee
Confidence 89999875542 33344444 5667788899999999999999975
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-18 Score=143.42 Aligned_cols=251 Identities=17% Similarity=0.249 Sum_probs=169.8
Q ss_pred ecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc---CceeEEEecC
Q 044557 14 TLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL---ADKLFSAHQD 87 (362)
Q Consensus 14 tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~---~~~l~s~~~d 87 (362)
...||+++|..++|. ...|||||.|.+|+||++...... ..+......+..|...|..+.+- .+.|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--RDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--cCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 367999999999995 568999999999999998643211 11111223344555566666553 4669999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
.+|.+|++.+++.. . + ..|.+.|.++.|+.||.+|++++.|+.||
T Consensus 154 n~v~iWnv~tgeal-------i---------------------------~-l~hpd~i~S~sfn~dGs~l~TtckDKkvR 198 (472)
T KOG0303|consen 154 NTVSIWNVGTGEAL-------I---------------------------T-LDHPDMVYSMSFNRDGSLLCTTCKDKKVR 198 (472)
T ss_pred ceEEEEeccCCcee-------e---------------------------e-cCCCCeEEEEEeccCCceeeeecccceeE
Confidence 99999999776521 0 1 23889999999999999999999999999
Q ss_pred EEECCCceEEEeeeccCccc-EEEEEEcCCCcEEEEe----CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 168 IWRTSDFKCLESITNAHDDA-INAVALSDDGDVYTGS----ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
|||.++++.+..- .+|.+. -..+.|-.+|.+++.+ .+..+-+||..+-+... ....+. ..++|----|.||.
T Consensus 199 v~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elD-tSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 199 VIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI-ALQELD-TSNGVLLPFYDPDT 275 (472)
T ss_pred EEcCCCCcEeeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcc-eeEEec-cCCceEEeeecCCC
Confidence 9999999987765 467663 2334466677777644 67899999987654331 222232 23455544567888
Q ss_pred CEEEEEc-CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCC
Q 044557 243 SVLYSGA-CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 243 ~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~ 305 (362)
+.++.+| .|+.||+|.+..+.+....+.++.. ...=..+.+-+..-+..++....|+|+...
T Consensus 276 ~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S-~epQRG~g~mPKRGl~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 276 SIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS-KEPQRGMGFMPKRGLDVSKCEIARFYKLHE 338 (472)
T ss_pred CEEEEEecCCcceEEEEecCCCceeEEeccccc-CCccccccccccccccchHHHHHHHHHhhc
Confidence 8777555 6999999998765544444444432 122234555555445555555566666433
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-18 Score=151.53 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=91.5
Q ss_pred eeEEEEec-CCCEEEEEcCCCcEEEEeccCCC---CcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeCCC
Q 044557 233 INALALSC-DGSVLYSGACDRSIIVWEKEEDD---GNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 233 v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~~~ 305 (362)
|+.+.|.| |...|+.++.||.|++|.+..+. ......+.+.+|...|.++.|.+ +.++++|.|-+|++||+.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~- 708 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA- 708 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh-
Confidence 34556666 66889999999999999876432 12233455778999999999975 689999999999999964
Q ss_pred CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 306 RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 306 ~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+.+....|.||.+.|.++||+|++. .+|+.+.||+||+++-.
T Consensus 709 -~~~~~~~l~gHtdqIf~~AWSpdGr---------~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 709 -NAKLYSRLVGHTDQIFGIAWSPDGR---------RIATVCKDGTLRVYEPR 750 (1012)
T ss_pred -hhhhhheeccCcCceeEEEECCCCc---------ceeeeecCceEEEeCCC
Confidence 3455567999999999999988764 59999999999999864
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=152.76 Aligned_cols=273 Identities=20% Similarity=0.306 Sum_probs=173.9
Q ss_pred ecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCc
Q 044557 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHK 89 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~ 89 (362)
||..|.+.|+++.|. ...|++|+.||+|++|++..........+ ........|.++|.|+++.. ..+|+|+-||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~-epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV-EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce-eeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 788999999999994 46899999999999999843211111111 11223456889999998764 45999999999
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIW 169 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iw 169 (362)
|+.|++.......... +.. ...-.+.+|.+.+..+++++....|++++.||++++|
T Consensus 368 I~~w~~p~n~dp~ds~---------dp~---------------vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w 423 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSY---------DPS---------------VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLW 423 (577)
T ss_pred eeeeccCCCCCccccc---------Ccc---------------hhccceeccccceeeeeecccccceeeecCCceEEee
Confidence 9999885221100000 000 0112346899999999999999999999999999999
Q ss_pred ECCCceEEEeeec-cCcccEEEEEEcCCC-c-EEEEeCCCeEEEEeCCCCCCcceee---hhhhccccceeEEEEecCCC
Q 044557 170 RTSDFKCLESITN-AHDDAINAVALSDDG-D-VYTGSADKKIKVWRRSPGNKKHSLV---DVLERHNSGINALALSCDGS 243 (362)
Q Consensus 170 d~~~~~~~~~~~~-~h~~~v~~v~~~~~~-~-~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i~~s~~~~ 243 (362)
+...... ..+.. ...+...++.+-... . .++...-+.--+++.+.......+. .........++.+...|.+.
T Consensus 424 ~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 424 EPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred ccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence 9876544 11211 112233455543222 1 1221112222222222221110000 00011124567788899999
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
..+++..|+.|+++|...+. ++.....|...++++++.++ ++++++.|+.+++|+...+ .|+.....|.
T Consensus 503 ~~~~~hed~~Ir~~dn~~~~----~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k--~~~~es~~~r 573 (577)
T KOG0642|consen 503 ITFTAHEDRSIRFFDNKTGK----ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK--TCVLESTAHR 573 (577)
T ss_pred eeEecccCCceecccccccc----cchheeeccceecceeecCCCceEEeecCCceeehhhccch--heeecccccc
Confidence 99999999999999987643 44556779999999998765 8999999999999985432 3344444443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-18 Score=147.69 Aligned_cols=225 Identities=16% Similarity=0.245 Sum_probs=165.5
Q ss_pred eeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEecCC
Q 044557 11 CLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAHQDH 88 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~~dg 88 (362)
.++.+.|....+.++.-.+.|+++|+..+.|+|||+... +. .+.++.|...|.++..+ ..+|++++..|
T Consensus 73 ~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k---l~------hr~lkdh~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 73 RVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK---LI------HRFLKDHQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred eeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH---HH------hhhccCCcceeEEEEecCCcceeEEeccCC
Confidence 444455554333333324679999999999999998631 11 12234456678888765 34699999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee--cCceeEEEEecCCC-EEEEEECCCc
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH--VDAVSALALTKDET-LLYSVSWDRT 165 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~-~l~s~s~d~~ 165 (362)
.|.+..+.++.... . +.| ...|+-+.|+|..+ +|.+++.+|.
T Consensus 144 diiih~~~t~~~tt----~-------------------------------f~~~sgqsvRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTT----T-------------------------------FTIDSGQSVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred cEEEEecccCcccc----c-------------------------------eecCCCCeEEEeecccccceeeEeeccCCe
Confidence 99999876543110 0 011 13455678888776 4677899999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
|.+||+........+...|..+...|+|+|... +++.+.|++|.+||.........+. -..|.+.++|+++|.
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-----y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-----YSHPLSTVAFSECGT 263 (673)
T ss_pred EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-----ecCCcceeeecCCce
Confidence 999999988888778889999999999999875 7789999999999987544322221 245789999999999
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (362)
+|+.|...|.|..||++..... +..+..|...|++++|.+.
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~P---v~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAP---VAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred EEEeecCCceEEEEecccCCCC---ceEeeecccceeEEEeeec
Confidence 9999999999999999875543 3456678889999999644
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=136.81 Aligned_cols=259 Identities=18% Similarity=0.229 Sum_probs=178.4
Q ss_pred eeecccCccceeeeEec---CcEEEEecCC-------CeEEEeecCCCCcccceeeecc-ceeEEeecceeEEEEEcCc-
Q 044557 12 LTTLKGHNSYVSSLALA---GKFLYTGSSD-------NEVRSWDCNTFSSELDQEFLSN-NNIVAVGKGAVKSLVVLAD- 79 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~---~~~l~t~s~D-------g~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~- 79 (362)
..+|..|.+.|+.|+-+ .+.|+|+-.| ..+-||.++............. ...-..+-+.+.|+.+.++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 34677789999999874 5677776442 2356998764322100000000 0000012346677777654
Q ss_pred -eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--CCCE
Q 044557 80 -KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK--DETL 156 (362)
Q Consensus 80 -~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~ 156 (362)
++++-. |..|.+|+++..... .+.++.... ..|....++-+|+| +++.
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~------vaev~ss~s----------------------~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKI------VAEVLSSES----------------------AEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred CeeEEec-cCceEEEEcccCcch------heeeccccc----------------------ccccceecccccCCCCccce
Confidence 465554 889999999765421 111111000 12444566777877 7787
Q ss_pred EEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhcccccee
Q 044557 157 LYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN 234 (362)
Q Consensus 157 l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~ 234 (362)
+++.+ |+++..||+++.++...+..+|..-|..+.|+|+.+ +++++.||.|++||....+ .....+.+|...|.
T Consensus 187 v~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 187 VATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVW 262 (370)
T ss_pred EEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEE
Confidence 87755 899999999998888888889999999999999886 8899999999999987543 34556788999999
Q ss_pred EEEEec-CCCEEEEEcCCCcEEEEeccCCCC----------------------cE---EEEEeecCccceeEEEEEeC-C
Q 044557 235 ALALSC-DGSVLYSGACDRSIIVWEKEEDDG----------------------NI---LVVGALRGHTKSILCMAVVS-D 287 (362)
Q Consensus 235 ~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~----------------------~~---~~~~~~~~h~~~v~~~~~~~-~ 287 (362)
++.|.| -.++|++||.|..|.+|...+-.. +. -.+.++..|.+.|.+++|+. +
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence 999998 457889999999999997532100 00 02345677999999999974 2
Q ss_pred --eEEEeeCCCcEEEeeC
Q 044557 288 --LVCSGSADKTIRIWRG 303 (362)
Q Consensus 288 --~~~s~s~D~~i~~W~~ 303 (362)
.+|+-|.||.+.|=+.
T Consensus 343 PWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSV 360 (370)
T ss_pred CeeEEEeccCceEEeecC
Confidence 8999999999988653
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=140.48 Aligned_cols=207 Identities=20% Similarity=0.299 Sum_probs=153.5
Q ss_pred EeeecCceeEEEEecCC-CEEEEEECC-------CcEEEEECCCc---------eEEEeeeccCcccEEEEEEcCCCcEE
Q 044557 138 WVHHVDAVSALALTKDE-TLLYSVSWD-------RTIKIWRTSDF---------KCLESITNAHDDAINAVALSDDGDVY 200 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~~-~~l~s~s~d-------~~i~iwd~~~~---------~~~~~~~~~h~~~v~~v~~~~~~~~~ 200 (362)
+.+|.+.|..++-+|-. ++|+++-.| -...||.+... +++..+...+-+.|.|+.|.|++.-+
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl 138 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL 138 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence 35677888889888855 466666543 24779987642 23333433455689999999998744
Q ss_pred EEeCCCeEEEEeCCCCCCcce-ee-hhhhccccceeEEEEec--CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc
Q 044557 201 TGSADKKIKVWRRSPGNKKHS-LV-DVLERHNSGINALALSC--DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT 276 (362)
Q Consensus 201 s~~~dg~i~iw~~~~~~~~~~-~~-~~~~~h~~~v~~i~~s~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~ 276 (362)
++-.|..|.+|+++.+..+.. +. ..-.++....++-+|+| ||..+++.+ |+++..||+++..... ..-.+|.
T Consensus 139 asm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~---sI~dAHg 214 (370)
T KOG1007|consen 139 ASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNN---SIEDAHG 214 (370)
T ss_pred EEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhc---chhhhhc
Confidence 444599999999987754221 11 11123566778889999 788877765 8899999998654332 2346799
Q ss_pred ceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 277 KSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 277 ~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
..|..+.|.++ +|+|++.||.||+||.... -.+++.+.+|+-.|+++.|.|..+ .+|.|||.|+.|.+
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-k~pv~el~~HsHWvW~VRfn~~hd--------qLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-KFPVQELPGHSHWVWAVRFNPEHD--------QLILSGGSDSAVNL 285 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCC-CccccccCCCceEEEEEEecCccc--------eEEEecCCCceeEE
Confidence 99999999876 7999999999999997543 456889999999999999988755 48999999999999
Q ss_pred Eecc
Q 044557 354 WQIS 357 (362)
Q Consensus 354 W~~~ 357 (362)
|...
T Consensus 286 sca~ 289 (370)
T KOG1007|consen 286 SCAS 289 (370)
T ss_pred Eecc
Confidence 9763
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-16 Score=137.78 Aligned_cols=263 Identities=13% Similarity=0.155 Sum_probs=164.6
Q ss_pred cceeeecccCccceeeeEec--CcEE-EEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFL-YTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFS 83 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l-~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s 83 (362)
.+++.++.+|.. +.++.++ ++.+ ++++.|+.|++||..+... ...+.. + .....+.+.+ +.+++
T Consensus 21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~-------~-~~~~~~~~~~~g~~l~~ 89 (300)
T TIGR03866 21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPS-------G-PDPELFALHPNGKILYI 89 (300)
T ss_pred CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccC-------C-CCccEEEECCCCCEEEE
Confidence 456777777654 5678874 5555 6778899999999875321 111110 1 1123344443 34555
Q ss_pred E-ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 84 A-HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 84 ~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+ +.|+.|++||+..... +... .+...+.+++++|+++++++++.
T Consensus 90 ~~~~~~~l~~~d~~~~~~-------~~~~----------------------------~~~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 90 ANEDDNLVTVIDIETRKV-------LAEI----------------------------PVGVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EcCCCCeEEEEECCCCeE-------EeEe----------------------------eCCCCcceEEECCCCCEEEEEec
Confidence 4 5689999999865321 0000 11123567899999999999887
Q ss_pred CC-cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCCeEEEEeCCCCCCcceeehhh-hcccc--ceeEE
Q 044557 163 DR-TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADKKIKVWRRSPGNKKHSLVDVL-ERHNS--GINAL 236 (362)
Q Consensus 163 d~-~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg~i~iw~~~~~~~~~~~~~~~-~~h~~--~v~~i 236 (362)
++ .+.+||.++++....... ...+..++|+|+++ ++ ++..++.|++||+.++.....+.... ..+.. ....+
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i 212 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV--DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGI 212 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc--CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccce
Confidence 75 567789988776654432 23457789999997 43 44569999999998765332221110 01111 23468
Q ss_pred EEecCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEe-eCCCcEEEeeCCCCceeeee
Q 044557 237 ALSCDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSG-SADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 237 ~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~-s~D~~i~~W~~~~~~~~~~~ 312 (362)
+|+|++++++.+ +.++.+.+||.++.+ . ...+ .+...+.+++|+++ +++++ +.++.|++||.. ..+++.
T Consensus 213 ~~s~dg~~~~~~~~~~~~i~v~d~~~~~--~--~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~--~~~~~~ 285 (300)
T TIGR03866 213 KLTKDGKTAFVALGPANRVAVVDAKTYE--V--LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA--ALKVIK 285 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCc--E--EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC--CCcEEE
Confidence 899999986554 557789999987533 1 1222 13346788888754 66665 568999999964 355666
Q ss_pred EecCCCCcEEEEEee
Q 044557 313 VLEGHRGPVKCLAAA 327 (362)
Q Consensus 313 ~l~~h~~~v~~~~~~ 327 (362)
.+... ...+.++++
T Consensus 286 ~~~~~-~~~~~~~~~ 299 (300)
T TIGR03866 286 SIKVG-RLPWGVVVR 299 (300)
T ss_pred EEEcc-cccceeEeC
Confidence 66543 455777764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-15 Score=138.99 Aligned_cols=285 Identities=32% Similarity=0.558 Sum_probs=199.6
Q ss_pred ecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE-c--Cc-eeEEE-ec
Q 044557 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV-L--AD-KLFSA-HQ 86 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~--~~-~l~s~-~~ 86 (362)
.+.+|...+.++.+. +..++.++.|+.+.+|+....... ...+... ....+..+.. . .. .+... ..
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL-IKSLEGL------HDSSVSKLALSSPDGNSILLASSSL 132 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee-EEEEecc------CCCceeeEEEECCCcceEEeccCCC
Confidence 467899999999984 678888999999999997654201 1111110 0012222222 2 22 23333 44
Q ss_pred CCcEEEEecCC-CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC-CC
Q 044557 87 DHKIRVWKINN-QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW-DR 164 (362)
Q Consensus 87 dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-d~ 164 (362)
|+.+.+|+... .. .......|...|..++|+|+++++++++. |+
T Consensus 133 d~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 178 (466)
T COG2319 133 DGTVKLWDLSTPGK----------------------------------LIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178 (466)
T ss_pred CccEEEEEecCCCe----------------------------------EEEEEecCcccEEEEEECCCCCEEEecCCCCC
Confidence 89999999864 11 11123467888999999999999988886 99
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEE-eCCCeEEEEeCCCCCCcceeeh-hhhccccceeEEEEecC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTG-SADKKIKVWRRSPGNKKHSLVD-VLERHNSGINALALSCD 241 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~-~~dg~i~iw~~~~~~~~~~~~~-~~~~h~~~v~~i~~s~~ 241 (362)
.+++|++.....+..+. .|...+.+++++|++. ++++ +.|+.|++||...+. ... .+..|...+ ...|+|+
T Consensus 179 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~-~~~~~~~ 252 (466)
T COG2319 179 TIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK----LLRSTLSGHSDSV-VSSFSPD 252 (466)
T ss_pred ceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc----EEeeecCCCCcce-eEeECCC
Confidence 99999999877766665 5899999999999986 5544 899999999876332 222 455676665 3489999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEe--cCC
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVL--EGH 317 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l--~~h 317 (362)
+..+++++.|+.+++|+......... ...+|...+.++.+.+ ..+++++.|+.+++|+.... ...... .+|
T Consensus 253 ~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~ 327 (466)
T COG2319 253 GSLLASGSSDGTIRLWDLRSSSSLLR---TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG--KLLSSLTLKGH 327 (466)
T ss_pred CCEEEEecCCCcEEEeeecCCCcEEE---EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC--ceEEEeeeccc
Confidence 99999999999999999986543122 2267888899998876 47777999999999975432 223333 478
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...+..+.+ +.. ...+..++..|+.+++|++..
T Consensus 328 ~~~~~~~~~-~~~-------~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 328 EGPVSSLSF-SPD-------GSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred CCceEEEEE-CCC-------CCEEEEeecCCCcEEeeecCC
Confidence 888999888 421 113444447889999999854
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-17 Score=139.55 Aligned_cols=300 Identities=17% Similarity=0.232 Sum_probs=198.4
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcc---cceeeeccceeEEeecceeEEEEEcC--ceeEE
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSE---LDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFS 83 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s 83 (362)
|-+.+.+|.+-|.+|.|+ +++||+|+.|..+++|+++..-.. ++..... ..|...+.++.+.. .++++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~-----~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME-----HPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc-----CccccceEEEEEccCCeeEec
Confidence 445678999999999995 789999999999999997642110 1111111 12346788888753 45999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
|..+++|.+.|+++.+.. .... . ....+.|..+..+|..+.|++.+.+
T Consensus 123 G~~~~~VI~HDiEt~qsi-------~V~~--------------------~-----~~~~~~VY~m~~~P~DN~~~~~t~~ 170 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSI-------YVAN--------------------E-----NNNRGDVYHMDQHPTDNTLIVVTRA 170 (609)
T ss_pred CCCcceeEeeecccceee-------eeec--------------------c-----cCcccceeecccCCCCceEEEEecC
Confidence 999999999998754311 0000 0 0123478888999999999999999
Q ss_pred CcEEEEECCCce-EEEeeeccC-cccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCc-c--eeehhhhccccceeEE
Q 044557 164 RTIKIWRTSDFK-CLESITNAH-DDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKK-H--SLVDVLERHNSGINAL 236 (362)
Q Consensus 164 ~~i~iwd~~~~~-~~~~~~~~h-~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~-~--~~~~~~~~h~~~v~~i 236 (362)
+.|.+||.+... ....+..+. ......+-|+|... +++.+.-+-+-+||....... . .....++.....-..+
T Consensus 171 ~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~ 250 (609)
T KOG4227|consen 171 KLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS 250 (609)
T ss_pred ceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence 999999998754 222222222 33566778998763 677888888999997643210 0 0001111111223467
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEE-eecC--ccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCC----c-
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVG-ALRG--HTKSILCMAVVSD-LVCSGSADKTIRIWRGIDR----N- 307 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~--h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~----~- 307 (362)
.|+|.|..+++--.-..-.+||+.+......... ...| ....+.+++|.++ -++|||.|=.|.+|++... .
T Consensus 251 ~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~ 330 (609)
T KOG4227|consen 251 LWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGF 330 (609)
T ss_pred eeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCc
Confidence 8999999988776666667888876443221110 0000 1234667888777 5899999999999985210 0
Q ss_pred ----------------eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 308 ----------------YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 308 ----------------~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
...+-.|.||.+-++-+.|+|- .++|+|.+-...++||.-
T Consensus 331 ~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H---------~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 331 TQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH---------NNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccCcchhhCchhheecceeEEEecccccccceeecCC---------cceEeccchhhheecccc
Confidence 0123458899999999988653 368999999999999953
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-17 Score=135.31 Aligned_cols=270 Identities=20% Similarity=0.296 Sum_probs=177.9
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceee---eccceeEEeecc-eeEEEEEc---------CceeEEEecCCcEEEEe
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEF---LSNNNIVAVGKG-AVKSLVVL---------ADKLFSAHQDHKIRVWK 94 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~---~~~~~~~~~~~~-~v~~i~~~---------~~~l~s~~~dg~i~~w~ 94 (362)
+|.-|++-+.|..+++|++........... ......++..++ .|....+. .+..++.+.|..|++||
T Consensus 60 DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wd 139 (406)
T KOG2919|consen 60 DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWD 139 (406)
T ss_pred CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeee
Confidence 467899999999999999864322111010 001111222222 23333332 12467788999999999
Q ss_pred cCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC---ceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 95 INNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD---AVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
.-+++...+. . ...|.+ ..-+++|+|||..|++| ..+.|+++|+
T Consensus 140 aftG~lraSy------------------~--------------~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt 186 (406)
T KOG2919|consen 140 AFTGKLRASY------------------R--------------AYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDT 186 (406)
T ss_pred ccccccccch------------------h--------------hhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeec
Confidence 8765421100 0 001222 23589999999999865 5799999998
Q ss_pred -CCceE---EEeeec---cCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 172 -SDFKC---LESITN---AHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 172 -~~~~~---~~~~~~---~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
+.++. ..++.. +..+.+.+++|+|-. .++.++....+-||.-....+ ...+.+|.++|+.+.|.++|
T Consensus 187 ~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----l~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 187 SRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----LQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred cCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc----eeeecccCCCeeeEEeccCc
Confidence 44432 122221 225568889999865 378899999999987665543 34556899999999999999
Q ss_pred CEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccc----ee-EEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecC
Q 044557 243 SVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTK----SI-LCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 243 ~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~----~v-~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
..|++|+. |-.|.+||++..... +..+..|.. +| ..++..+++|++|+.||.|++||... -+..+..+..
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~p---v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~-~gn~~sv~~~ 338 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDP---VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD-LGNEVSVTGN 338 (406)
T ss_pred CeecccccCCCeEEEEeehhccch---hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC-CCCccccccc
Confidence 99999985 778999999865433 333444543 33 24444567999999999999999643 2334566778
Q ss_pred CCCcEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 317 HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 317 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
|+..|+.++++|- ..++|++|.
T Consensus 339 ~sd~vNgvslnP~---------mpilatssG 360 (406)
T KOG2919|consen 339 YSDTVNGVSLNPI---------MPILATSSG 360 (406)
T ss_pred ccccccceecCcc---------cceeeeccC
Confidence 9999999998754 346666653
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-16 Score=148.86 Aligned_cols=290 Identities=21% Similarity=0.317 Sum_probs=184.1
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc----eeEEEecCCcEEEEecCCCC-CCcc
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD----KLFSAHQDHKIRVWKINNQE-PDHQ 103 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~l~s~~~dg~i~~w~~~~~~-~~~~ 103 (362)
...+++++..-.|+|||.+... ....|.... .....|+.+.+.++ .+++|+.||.||+|+--... ....
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~--~l~~F~n~~----~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e 1149 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGR--LLNGFDNGA----FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE 1149 (1387)
T ss_pred CceeEEcCCcceEEEEecccCc--eeccccCCC----CCCCccceeeeecccchhheeeeccCceEEEecccccccCCce
Confidence 5678888888899999976532 111121110 12346677765443 38899999999999742111 0000
Q ss_pred cceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc
Q 044557 104 KYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA 183 (362)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 183 (362)
..+....+.. . ..+-.+.=.-+.|.....+|+++|+-+.|||||.....+...+-.+
T Consensus 1150 LVTaw~~Ls~---~--------------------~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1150 LVTAWSSLSD---Q--------------------LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eEEeeccccc---c--------------------CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC
Confidence 1111100000 0 0000111134566666667777777899999999988777766444
Q ss_pred CcccEEEEEEc-CCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccc--eeEEEEecCCCE-EEEEcCCCcEEEEe
Q 044557 184 HDDAINAVALS-DDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG--INALALSCDGSV-LYSGACDRSIIVWE 258 (362)
Q Consensus 184 h~~~v~~v~~~-~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~--v~~i~~s~~~~~-l~s~~~d~~i~~wd 258 (362)
-...|+++.-+ +.|. +++|-.||.|++||....... ..+.....|+.. |..+.+-++|-. |++|+.||.|++||
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEe
Confidence 45556666533 3344 788999999999998765432 345556678776 889999887754 99999999999999
Q ss_pred ccCCCCcEEEEEeecCcc--c-eeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeee----EecCCCCcEEEEEeeec
Q 044557 259 KEEDDGNILVVGALRGHT--K-SILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLA----VLEGHRGPVKCLAAAID 329 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~--~-~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~----~l~~h~~~v~~~~~~~~ 329 (362)
++.... .... ....|- + .++++.... +.+|+|+. +.|+||+...+....++ .+..-...+.+++|+|-
T Consensus 1286 lR~~~~-e~~~-~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1286 LRMSSK-ETFL-TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred cccCcc-cccc-eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecch
Confidence 987321 1111 111222 2 477887764 58999999 99999986443221111 12233557799999875
Q ss_pred CCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 330 NDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 330 ~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
. .+||.|+.|.+|-||....+-
T Consensus 1363 ~---------~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1363 R---------LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred h---------HhhhhccCCceEEEeecCCcC
Confidence 3 469999999999999886553
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-18 Score=161.00 Aligned_cols=233 Identities=18% Similarity=0.214 Sum_probs=172.4
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYS 159 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s 159 (362)
|+.|..||.|-+|+...... ... .. ...+...|.+.|..+.|++... +||+
T Consensus 83 IaGG~edG~I~ly~p~~~~~-~~~-----------------------~~----~la~~~~h~G~V~gLDfN~~q~nlLAS 134 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIA-NAS-----------------------EE----VLATKSKHTGPVLGLDFNPFQGNLLAS 134 (1049)
T ss_pred eeccccCCceEEecchhhcc-Ccc-----------------------hH----HHhhhcccCCceeeeeccccCCceeec
Confidence 77788999999998753200 000 00 0011235899999999999765 9999
Q ss_pred EECCCcEEEEECCCceEEEee-eccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccc--ccee
Q 044557 160 VSWDRTIKIWRTSDFKCLESI-TNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHN--SGIN 234 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~~-~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~--~~v~ 234 (362)
|+.||.|.|||++..+..... .....+.|.+++|+..-. |++++.+|.+.|||++..+....+ ..+. ..+.
T Consensus 135 Ga~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l----s~~~~~~~~S 210 (1049)
T KOG0307|consen 135 GADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL----SDTPGRMHCS 210 (1049)
T ss_pred cCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc----ccCCCcccee
Confidence 999999999999875533222 223456799999997653 789999999999999865433222 2222 3578
Q ss_pred EEEEecCCC-EEEEEcCCC---cEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeCCCCc
Q 044557 235 ALALSCDGS-VLYSGACDR---SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 235 ~i~~s~~~~-~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~~~~~ 307 (362)
.+.|+|++. .|++++.|. .|.+||++..... +..+.+|...|.++.|++ ++++|++.|+.|.+|+. ++
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP---~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~--~t 285 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP---LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNP--NT 285 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCc---hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecC--CC
Confidence 899999874 566666654 4899999865443 344678999999999963 48999999999999984 34
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++.+..+-.-.+++..+.|.|... ..++.+|-||.|.|+.+..
T Consensus 286 gEvl~~~p~~~nW~fdv~w~pr~P--------~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 286 GEVLGELPAQGNWCFDVQWCPRNP--------SVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred ceEeeecCCCCcceeeeeecCCCc--------chhhhheeccceeeeeeec
Confidence 667888877788999999987632 3688899999999998854
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-17 Score=135.41 Aligned_cols=276 Identities=16% Similarity=0.285 Sum_probs=177.3
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE----cCceeEEEecCCcEEEEecCCCCCCcccc
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV----LADKLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~----~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
..+|++-+.|+||+||..++. ...++.. +.+.+..+.+ .++.+++|+.||+|++||++.........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~--~l~~fk~-------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ--LLEEFKG-------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchh--hhheecC-------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 458888889999999987632 2222221 2222333333 34569999999999999997654211100
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeec-CceeEEEEecCCCEEEEEE----CCCcEEEEECCCceE-EEe
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV-DAVSALALTKDETLLYSVS----WDRTIKIWRTSDFKC-LES 179 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s----~d~~i~iwd~~~~~~-~~~ 179 (362)
+-.+. .+..|++.+..++.+++|. .|-.|.+||++..+. +..
T Consensus 112 --------------------------------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~ 159 (376)
T KOG1188|consen 112 --------------------------------WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ 159 (376)
T ss_pred --------------------------------ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh
Confidence 00111 3456666666777787775 356799999998776 777
Q ss_pred eeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-CEEEEEcCCCcEEE
Q 044557 180 ITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG-SVLYSGACDRSIIV 256 (362)
Q Consensus 180 ~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~~d~~i~~ 256 (362)
+...|.+.|++++|+|... +++|+.||-|.+||+......-.+..++ .|...|..+.|..++ +.|.+-+...+..+
T Consensus 160 ~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~ 238 (376)
T KOG1188|consen 160 LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAI 238 (376)
T ss_pred hhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeE
Confidence 8888999999999999763 8899999999999987654433343333 467789999998776 46888999999999
Q ss_pred EeccCCCCcEEEEEe-ec--------CccceeEEEEEe-CCeEEEeeC-CCcEEEeeCC----CCceeeeeEecC-CCCc
Q 044557 257 WEKEEDDGNILVVGA-LR--------GHTKSILCMAVV-SDLVCSGSA-DKTIRIWRGI----DRNYTCLAVLEG-HRGP 320 (362)
Q Consensus 257 wd~~~~~~~~~~~~~-~~--------~h~~~v~~~~~~-~~~~~s~s~-D~~i~~W~~~----~~~~~~~~~l~~-h~~~ 320 (362)
|+++.+......... +. .....|.+.... .+..+.++. -+...++-.. ....+.+..|.| |.+.
T Consensus 239 ~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei 318 (376)
T KOG1188|consen 239 YELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI 318 (376)
T ss_pred EEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHH
Confidence 999865432211110 00 000012222221 234444444 4556666432 122344567887 6666
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|.++.|.. .+.++.|||.||.+.+|..
T Consensus 319 VR~i~~~~---------~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 319 VRDILFDV---------KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHHHhhhc---------ccceeeccCCCceEEEEec
Confidence 66665532 1246889999999999984
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=158.82 Aligned_cols=243 Identities=21% Similarity=0.305 Sum_probs=175.5
Q ss_pred ceeeeEec--Cc----EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeEEEecCCcEE
Q 044557 21 YVSSLALA--GK----FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDHKIR 91 (362)
Q Consensus 21 ~V~~l~~~--~~----~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~ 91 (362)
....|.|. +. .||.|..||.|-+||..........+.. .....|.+.|..+.++. +.|++|+.||.|.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l---a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL---ATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH---hhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 44667773 22 5999999999999997542100011111 11134788999998864 4699999999999
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCcEEEEE
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRTIKIWR 170 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd 170 (362)
+||++..+..... . . ..-.+.|.+++|+..- .+|++++.+|++.|||
T Consensus 143 iWDlnn~~tP~~~--~--~----------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 143 IWDLNKPETPFTP--G--S----------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred EeccCCcCCCCCC--C--C----------------------------CCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 9999864321000 0 0 1124578899998654 5799999999999999
Q ss_pred CCCceEEEeeeccC-cccEEEEEEcCCCc--EEEEeCCC---eEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-C
Q 044557 171 TSDFKCLESITNAH-DDAINAVALSDDGD--VYTGSADK---KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG-S 243 (362)
Q Consensus 171 ~~~~~~~~~~~~~h-~~~v~~v~~~~~~~--~~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~ 243 (362)
++..+.+-.+...- ...+..++|+|++. +++++.|. .|.+||++... +....+..|..+|.++.|++.+ .
T Consensus 191 lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---sP~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 191 LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---CchhhhcccccceeeeccCCCCch
Confidence 99887665554211 12467899999984 66666543 69999987654 2345567899999999999965 8
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeCCC
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~~~ 305 (362)
+|++++.|++|.+|+.++++ +++.+......+..+.|.+ ..++.+|-||.|.|+.+..
T Consensus 268 lllSsgkD~~ii~wN~~tgE----vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 268 LLLSSGKDNRIICWNPNTGE----VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hhhcccCCCCeeEecCCCce----EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 99999999999999987643 5677777778888888875 4899999999999998543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-16 Score=149.97 Aligned_cols=266 Identities=17% Similarity=0.253 Sum_probs=162.4
Q ss_pred eccceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCcee
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKL 81 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l 81 (362)
+-+.++++|..|...|..++.+ +.+++|||.||+||+||.....++... ... ..........+.++.. .++.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s-~rS-~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS-ARS-ELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce-eee-eEEEeccCCceEEEEeccCCCeE
Confidence 4466888999999999998884 579999999999999997653322110 000 0111112334555543 46679
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEE-EEec-CCC-EEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSAL-ALTK-DET-LLY 158 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~-~~~-~l~ 158 (362)
+.++.||.|++.+++.....+...... ..+. ....+.+..| +|.. ... .|+
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~-ri~n-------------------------~~~~g~vv~m~a~~~~~~S~~lv 1167 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQV-RIPN-------------------------LKKDGVVVSMHAFTAIVQSHVLV 1167 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeee-eccc-------------------------ccCCCceEEeecccccccceeEE
Confidence 999999999999987522110000000 0000 0011122222 2322 223 677
Q ss_pred EEECCCcEEEEECCCceEEEeee-ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESIT-NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
.+...+.|..||++.......+. ..-.+.|++++.+|.+. ++.|+..|.+.+||+.-.....+. ...+..++..+
T Consensus 1168 y~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw---~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1168 YATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW---EHPARAPIRHV 1244 (1431)
T ss_pred EEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc---cCcccCCcceE
Confidence 78888999999998754332222 12346899999999987 889999999999999876544332 23455788888
Q ss_pred EEecC---CCEEEEEc--CCCcEEEEeccCCCCcEEEEEe---------ecC------cc-ceeEEEEE-eCCeEEEeeC
Q 044557 237 ALSCD---GSVLYSGA--CDRSIIVWEKEEDDGNILVVGA---------LRG------HT-KSILCMAV-VSDLVCSGSA 294 (362)
Q Consensus 237 ~~s~~---~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~---------~~~------h~-~~v~~~~~-~~~~~~s~s~ 294 (362)
..+|. ....++++ ..+.|.+|+++.+......... +.. +. ..+.|.-. .+.++.+|+.
T Consensus 1245 ~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs 1324 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS 1324 (1431)
T ss_pred EeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC
Confidence 87763 34555555 4678999999876543322211 000 00 11122111 2348999999
Q ss_pred CCcEEEeeC
Q 044557 295 DKTIRIWRG 303 (362)
Q Consensus 295 D~~i~~W~~ 303 (362)
|..||.||.
T Consensus 1325 d~kIR~wD~ 1333 (1431)
T KOG1240|consen 1325 DMKIRKWDP 1333 (1431)
T ss_pred ccceeeccC
Confidence 999999984
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-16 Score=127.84 Aligned_cols=268 Identities=17% Similarity=0.307 Sum_probs=174.9
Q ss_pred eeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCC
Q 044557 22 VSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINN 97 (362)
Q Consensus 22 V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~ 97 (362)
-.++.|+ |.+||.|..||.|-+||+.+.. -.+++..|..+++++.++.+ +|++++.|-.|.+||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc---------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 5677775 8999999999999999987632 13345567789999999865 599999999999999987
Q ss_pred CCCCcc-----cceeeeeccCCCchhhhhcccccccee-eeeeeeEEeee------cCceeEEEEecCCCEEEEEECCCc
Q 044557 98 QEPDHQ-----KYTRLATLPTLGDRAIKLLMPKNHVQI-RRHKTCTWVHH------VDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 98 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
+.+.+. ++.....+|....+.+...+...-..+ ........... .....+..|.+.|+++++|...|.
T Consensus 97 gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 764332 122233334333333222222111100 00011111110 112233458899999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc-----ceeehhhhc--cccceeEEE
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK-----HSLVDVLER--HNSGINALA 237 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~-----~~~~~~~~~--h~~~v~~i~ 237 (362)
+-++|..+.+++..+...-...|..+.++..|. ++.-+.|+.||.|+...-... ......++. .+..-.+++
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 999999999998877644447899999999887 778899999999987631100 011111111 123446789
Q ss_pred EecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 238 LSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 238 ~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
|+.||.|++.++. --.+++|....+. ++..+.|.. .....+.|.+- .+++- ..|.|++|..
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~Gs----LVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGS----LVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcc----eeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 9999999988874 3468999866533 445566655 34566777653 45555 6689999963
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=131.60 Aligned_cols=194 Identities=16% Similarity=0.211 Sum_probs=138.2
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
..|+.|++.|.+||+|+.||.|-|||+.++..-+.+ .+|..+|.+++|+++|+ |+|++.|..|++||+..+...+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri- 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI- 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-
Confidence 689999999999999999999999999998755544 58999999999999997 889999999999999988754433
Q ss_pred hhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEe-ecCccceeE-EEEE--eCCeEEEeeCCCcE
Q 044557 224 DVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGA-LRGHTKSIL-CMAV--VSDLVCSGSADKTI 298 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~-~~~~--~~~~~~s~s~D~~i 298 (362)
..+++|....|+|-....+ +.-.+..-.+-++..+.. ..+.. -.+....+. +..| .++++++|...|.+
T Consensus 104 ----rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl 177 (405)
T KOG1273|consen 104 ----RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL 177 (405)
T ss_pred ----EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence 3578999999998443222 222233333333332111 11110 011111111 1123 36799999999999
Q ss_pred EEeeCCCCceeeeeEecCCC-CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 299 RIWRGIDRNYTCLAVLEGHR-GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+++.. +.+|++.+.--+ ..|..+.|+..+ ..|+.-..|..||.+++.
T Consensus 178 lv~~a~--t~e~vas~rits~~~IK~I~~s~~g---------~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 178 LVYDAE--TLECVASFRITSVQAIKQIIVSRKG---------RFLIINTSDRVIRTYEIS 226 (405)
T ss_pred EEEecc--hheeeeeeeechheeeeEEEEeccC---------cEEEEecCCceEEEEehh
Confidence 999953 467887776555 678888876543 457788889999999985
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-16 Score=131.94 Aligned_cols=201 Identities=18% Similarity=0.320 Sum_probs=141.1
Q ss_pred EeeecCceeEEEEec-CCCEEEEEECCCcEEEEECCCce-------EEEeeeccCcccEEEEEEcCCCc--EEEEeCCCe
Q 044557 138 WVHHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFK-------CLESITNAHDDAINAVALSDDGD--VYTGSADKK 207 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~ 207 (362)
+.+|+++|..++|+| +...+|+||+|.+|.||++...- .+..+ .+|...|..|+|+|.-. |++++.|.+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccchhhHhhccCCce
Confidence 357999999999998 56789999999999999986532 23333 48999999999999764 889999999
Q ss_pred EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce--eEEEEEe
Q 044557 208 IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS--ILCMAVV 285 (362)
Q Consensus 208 i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~--v~~~~~~ 285 (362)
|.+|++.+++...+ +. |+.-|.++.|+.||.+|++.+.|..||+||.+.+. ++..-.+|.+. ...+-..
T Consensus 156 v~iWnv~tgeali~----l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~----~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT----LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT----VVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred EEEEeccCCceeee----cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc----EeeecccccCCCcceeEEec
Confidence 99999999874332 23 99999999999999999999999999999988643 22233456542 2333222
Q ss_pred CCeEEEee----CCCcEEEeeCCC-CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 286 SDLVCSGS----ADKTIRIWRGID-RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 286 ~~~~~s~s----~D~~i~~W~~~~-~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
...++|.+ .++.+-+|+-.. ...-...+|..-+ .|. +-|- ..++.-+-+.|-.|+.||.+.+.
T Consensus 227 ~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl-~PFy-------D~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVL-LPFY-------DPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cCceeeeccccccccceeccCcccccCcceeEEeccCC-ceE-Eeee-------cCCCCEEEEEecCCcceEEEEec
Confidence 22244433 688999998422 1112234454333 332 1221 12333444578889999999984
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-16 Score=131.02 Aligned_cols=255 Identities=15% Similarity=0.224 Sum_probs=161.1
Q ss_pred cceeeecccCccceeeeEec----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc-CceeEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL-ADKLFS 83 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~l~s 83 (362)
.+.++.+++|.+.+..+.|. +..+.+|+.||+||+||+..........+..+. ..+..+++.. ...++.
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~------~~~f~~ld~nck~~ii~ 133 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS------GTPFICLDLNCKKNIIA 133 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC------CCcceEeeccCcCCeEE
Confidence 66888999999999999993 468999999999999998764432221111110 1234444443 223333
Q ss_pred Ee-----cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEE
Q 044557 84 AH-----QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLL 157 (362)
Q Consensus 84 ~~-----~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l 157 (362)
++ .|..|.+||++..... +.. -...|.+.|+++.|+|.. ++|
T Consensus 134 ~GtE~~~s~A~v~lwDvR~~qq~------l~~--------------------------~~eSH~DDVT~lrFHP~~pnlL 181 (376)
T KOG1188|consen 134 CGTELTRSDASVVLWDVRSEQQL------LRQ--------------------------LNESHNDDVTQLRFHPSDPNLL 181 (376)
T ss_pred eccccccCceEEEEEEeccccch------hhh--------------------------hhhhccCcceeEEecCCCCCeE
Confidence 32 4678999999754310 000 012488999999999965 689
Q ss_pred EEEECCCcEEEEECCCceE----EEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceeehh-h----
Q 044557 158 YSVSWDRTIKIWRTSDFKC----LESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLVDV-L---- 226 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~----~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~~~-~---- 226 (362)
++||-||.|.|+|++.... +..+ .|...|.++.|..++ ++...+.+++..+|+++.+.....+... .
T Consensus 182 lSGSvDGLvnlfD~~~d~EeDaL~~vi--N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d 259 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKKDNEEDALLHVI--NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD 259 (376)
T ss_pred EeecccceEEeeecCCCcchhhHHHhh--cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence 9999999999999976532 2222 366779999999888 6889999999999999887643222110 0
Q ss_pred --h-ccccceeEEEEecCCCEEEEEcC-CCcEEEEeccC--CCCcEEEEEeecC-ccceeEEEEEe--CCeEEEeeCCCc
Q 044557 227 --E-RHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEE--DDGNILVVGALRG-HTKSILCMAVV--SDLVCSGSADKT 297 (362)
Q Consensus 227 --~-~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~--~~~~~~~~~~~~~-h~~~v~~~~~~--~~~~~s~s~D~~ 297 (362)
+ ..-..+-......+....+.++. -|...++-+.. .......+..+.+ |..-|+++.|. .+++.||++||.
T Consensus 260 ~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 260 LRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred HHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence 0 00011111111224455555555 55666554331 1111122233445 55556666653 569999999999
Q ss_pred EEEeeC
Q 044557 298 IRIWRG 303 (362)
Q Consensus 298 i~~W~~ 303 (362)
+.+|+.
T Consensus 340 l~~Wk~ 345 (376)
T KOG1188|consen 340 LQAWKV 345 (376)
T ss_pred EEEEec
Confidence 999983
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-15 Score=138.53 Aligned_cols=273 Identities=14% Similarity=0.176 Sum_probs=181.2
Q ss_pred CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc---CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCC
Q 044557 38 DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL---ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTL 114 (362)
Q Consensus 38 Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 114 (362)
++.+.+|++..... . + ........+.++.+. ++.++.|+.+|.|.+||+........ ..+
T Consensus 221 ~~~~~vW~~~~p~~-P--e------~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~--s~l------ 283 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNT-P--E------LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP--SGL------ 283 (555)
T ss_pred CceEEEEecCCCCC-c--e------EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC--ccc------
Confidence 45899999875421 1 1 111224466666654 46699999999999999976542110 000
Q ss_pred CchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC--CEEEEEECCCcEEEEECCCceEE-Ee-----ee-----
Q 044557 115 GDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE--TLLYSVSWDRTIKIWRTSDFKCL-ES-----IT----- 181 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~-~~-----~~----- 181 (362)
......|.+++..+.|..+. .-|+++|.||.|..|+++...+. .. ..
T Consensus 284 --------------------s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~ 343 (555)
T KOG1587|consen 284 --------------------SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQ 343 (555)
T ss_pred --------------------ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccc
Confidence 00112477888888886544 34899999999999988654321 11 10
Q ss_pred ccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCc----ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEE
Q 044557 182 NAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKK----HSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 182 ~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~----~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
..-...+++++|.+.. .++.|+.+|.|.-=........ .+.......|.++|.++.++|=+..++..+.|-+++
T Consensus 344 ~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vr 423 (555)
T KOG1587|consen 344 SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVR 423 (555)
T ss_pred cccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeE
Confidence 0112357889998765 4899999999877333222211 122334556889999999999776666555599999
Q ss_pred EEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc
Q 044557 256 VWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR 332 (362)
Q Consensus 256 ~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~ 332 (362)
+|+....... +-.+..+...+++++|++. .++++..||.+.+||+..+...++.+..-+......+.+
T Consensus 424 iWs~~~~~~P---l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~------ 494 (555)
T KOG1587|consen 424 IWSEDVIASP---LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW------ 494 (555)
T ss_pred eccccCCCCc---chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec------
Confidence 9987632222 2234567778999999864 799999999999999866655556555545444444444
Q ss_pred cCCCCCceEEEecCCCCcEEEEecccC
Q 044557 333 CDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 333 ~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
++.+++|+.|..-|++.+|++.-.
T Consensus 495 ---s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 495 ---SPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ---CCCCcEEEEecCCCcEEEEEcCch
Confidence 344678999999999999999643
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=131.95 Aligned_cols=243 Identities=12% Similarity=0.216 Sum_probs=170.1
Q ss_pred cceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
.+.++++.+-+. -+++++.|+++++|.++..... . ...+..-.-+|
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~------------------------------lqS~~l~~fPi 260 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--K------------------------------LQSIHLEKFPI 260 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh--h------------------------------heeeeeccCcc
Confidence 457778877654 4899999999999998753311 0 11111223578
Q ss_pred eEEEEecCCC-EEEEEECCCcEEEEECCCceEEE--eeeccC-cccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 146 SALALTKDET-LLYSVSWDRTIKIWRTSDFKCLE--SITNAH-DDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 146 ~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~--~~~~~h-~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
.++.|.|+|. .+++++.-..+..||+.+.+..+ .+. ++ ...+....+++++. ++..+..|.|.+....+++...
T Consensus 261 ~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~-g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~ 339 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY-GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT 339 (514)
T ss_pred ceeeecCCCceEEEecccceEEEEeeccccccccccCCC-CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh
Confidence 8999999998 89999999999999998876432 121 22 23466677889887 7789999999998777665333
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEEeCCeEEEeeCCCcEE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAVVSDLVCSGSADKTIR 299 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~s~s~D~~i~ 299 (362)
++ + -.+.|..+.|+.|++.|++.+.+|.|.+||++.... .....-.|.. +.-.|++..+.++|+||.-|.|.
T Consensus 340 s~----K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~--~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 340 SF----K-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC--LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred ee----e-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce--EEEEeecCccceeeeeecCCCceEEeccCcceEE
Confidence 22 1 356799999999999999999999999999986522 1111112211 11234455677999999999999
Q ss_pred EeeCC----CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 300 IWRGI----DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 300 ~W~~~----~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
||+.. ....++++.+..-...|+.++|+++.+-. -|+|-..+..+|+=.++
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL-------AiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL-------AIASRVKKNALRLVHVP 467 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh-------hhhhhccccceEEEecc
Confidence 99842 24456777777778899999998775421 13344455667776654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-17 Score=154.06 Aligned_cols=238 Identities=22% Similarity=0.357 Sum_probs=176.4
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCC
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDH 88 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg 88 (362)
-++.|.||-..|.|+.|+ |.+++||+.|..+|||..+++. + +
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~--~---------------------------l------- 225 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR--C---------------------------L------- 225 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh--h---------------------------h-------
Confidence 445688999999999995 8999999999999999854421 0 0
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
.+..+|.+.|+.++.+.+..+++++|.|..|++
T Consensus 226 -----------------------------------------------As~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 226 -----------------------------------------------ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred -----------------------------------------------ccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 001257788888999888889999999999999
Q ss_pred EECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh-hccccceeEEEEecCCCEEEE
Q 044557 169 WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL-ERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 169 wd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~h~~~v~~i~~s~~~~~l~s 247 (362)
|.+.++..+..+ .+|+++|++++|+|- .+.+.||++++||..-. ........+ .....-+.++.|..++...+|
T Consensus 259 Wrl~~~~pvsvL-rghtgavtaiafsP~---~sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 259 WRLPDGAPVSVL-RGHTGAVTAIAFSPR---ASSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EecCCCchHHHH-hccccceeeeccCcc---ccCCCCCceEecccccc-ccccCCCCCCcccccceeeeecccccccccc
Confidence 999999887765 489999999999984 47889999999997611 110000000 012345677888888999999
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEE
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~ 324 (362)
++.|+.-..|..... ..+...+.-+..+ ..+.+++-.+..+.+|+.. .+.+.+.+.+|...+..+
T Consensus 334 gs~d~ea~n~e~~~l----------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~--~g~l~H~l~ghsd~~yvL 401 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQL----------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY--TGQLLHNLMGHSDEVYVL 401 (1113)
T ss_pred ccCCcccccchhhHh----------hhhccceEEEeccccccccceeeeeeeEeeeeecc--cchhhhhhcccccceeee
Confidence 999999888865421 1122222222222 1356677778888999853 466788999999999999
Q ss_pred EeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 325 AAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.++|... .+..+++.||.+.|||+
T Consensus 402 d~Hpfn~--------ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 402 DVHPFNP--------RIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred eecCCCc--------HhhhhccCCCceEeeec
Confidence 9998643 35679999999999998
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-13 Score=125.96 Aligned_cols=289 Identities=33% Similarity=0.514 Sum_probs=191.5
Q ss_pred eeeecccCcc-ceeeeEe---cCc-EEEEecC-CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eE
Q 044557 11 CLTTLKGHNS-YVSSLAL---AGK-FLYTGSS-DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LF 82 (362)
Q Consensus 11 ~~~tl~gH~~-~V~~l~~---~~~-~l~t~s~-Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~ 82 (362)
.+..+.++.. .+..+.+ .+. +++..+. |+.+++|+...... . ......+...+..+.+.++. ++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-------~~~~~~~~~~v~~~~~~~~~~~~~ 171 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-L-------IRTLEGHSESVTSLAFSPDGKLLA 171 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-E-------EEEEecCcccEEEEEECCCCCEEE
Confidence 4555666443 5666655 244 4555444 99999999764100 0 11223345566677776554 66
Q ss_pred EEec-CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEE
Q 044557 83 SAHQ-DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSV 160 (362)
Q Consensus 83 s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~ 160 (362)
+++. |+.+++|++..... ...+..|...+.+++++|++. .++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 172 SGSSLDGTIKLWDLRTGKP----------------------------------LSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred ecCCCCCceEEEEcCCCce----------------------------------EEeeccCCCceEEEEEcCCcceEEEEe
Confidence 6664 99999999865211 011224778899999999998 66666
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
+.|+.|++||...+..+......|.... ...|+|++. +++++.|+.+++|+...... ... ....|...|.++.|.
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~-~~~~~~~~v~~~~~~ 293 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLR-TLSGHSSSVLSVAFS 293 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEE-EEecCCccEEEEEEC
Confidence 9999999999887776663334676664 337999885 77899999999999876543 111 115678899999999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEe-eCCCcEEEeeCCCCceeeeeEecC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSG-SADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~-s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
|++..+++++.|+.+++|+........ ... ...|...+..+.+.+ ..++.+ ..|+.+++|+..... .......
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~ 369 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETGKLLS-SLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--PLKTLEG 369 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCCceEE-Eee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc--eeEEecC
Confidence 999999999999999999876543211 111 236777777777732 345444 788999999865433 2333333
Q ss_pred CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 317 HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 317 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+.. +..+.+.+ . . .....++.++.+++|+....
T Consensus 370 ~~~-~~~~~~~~-~-~-------~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 370 HSN-VLSVSFSP-D-G-------RVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred Cce-EEEEEECC-C-C-------CEEEEecCCCceEEEecccC
Confidence 332 77777754 2 2 22334789999999998654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=132.52 Aligned_cols=207 Identities=17% Similarity=0.281 Sum_probs=155.7
Q ss_pred CceeEEEEecC----CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCC
Q 044557 143 DAVSALALTKD----ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 143 ~~v~~~~~~~~----~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~ 216 (362)
+....++|+-+ ..++|.|+.-|.|+|.|+.++++...+. +|..+|+.+.+.|.. .+++++.|..||+|++++.
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 33444455432 4588999999999999999998887775 899999999999987 4889999999999999987
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC--------------CcE----------EEEEee
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD--------------GNI----------LVVGAL 272 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~--------------~~~----------~~~~~~ 272 (362)
.... .+.-..+|...|-++.|+++|.+|+++|.|.++++|++...+ +.. -...+-
T Consensus 169 ~Cv~-VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 169 VCVA-VFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred eEEE-EecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 6542 345567899999999999999999999999999999986211 000 001122
Q ss_pred cCccceeEEEEEeCCeEEEeeCCCcEEEeeCC---CC-----c----eeeeeEecCCCCcEEEEEeeecCCccCCCCCce
Q 044557 273 RGHTKSILCMAVVSDLVCSGSADKTIRIWRGI---DR-----N----YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSY 340 (362)
Q Consensus 273 ~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~---~~-----~----~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~ 340 (362)
.-|...|.|+.|-+++++|=|-++.|..|+.. +. . ...+..+.--+-.||-+.|.-+ +-+.
T Consensus 248 diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d-------~~~~ 320 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD-------PWQK 320 (385)
T ss_pred ccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec-------HHHH
Confidence 35888899999989999999999999999741 10 0 1112334434556777777543 4456
Q ss_pred EEEecCCCCcEEEEeccc
Q 044557 341 LVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 341 ~l~s~s~D~~i~~W~~~~ 358 (362)
+||.|...|.|.+||+..
T Consensus 321 ~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 321 MLALGNQSGKVYVWDLDN 338 (385)
T ss_pred HHhhccCCCcEEEEECCC
Confidence 799999999999999964
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-16 Score=140.56 Aligned_cols=246 Identities=20% Similarity=0.325 Sum_probs=177.8
Q ss_pred ccceeeecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe
Q 044557 8 DHHCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH 85 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~ 85 (362)
+..++.+|+||.+.|.++++ +|+.+|||+.|..|.+|.-..
T Consensus 42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl------------------------------------- 84 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL------------------------------------- 84 (1081)
T ss_pred CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-------------------------------------
Confidence 45678899999999999999 488999999999999996210
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.|.++ ..|.+.|.||.|+|-...|++|+- ..
T Consensus 85 -EG~Lk-----------------------------------------------YSH~D~IQCMsFNP~~h~LasCsL-sd 115 (1081)
T KOG1538|consen 85 -EGILK-----------------------------------------------YSHNDAIQCMSFNPITHQLASCSL-SD 115 (1081)
T ss_pred -cceee-----------------------------------------------eccCCeeeEeecCchHHHhhhcch-hh
Confidence 12221 137888999999999999998874 45
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC--
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG-- 242 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-- 242 (362)
.-+|......... ..-...+.+++|..||+ ++.|-.||+|.+-+.. +++. ..+....+.+.+|.+++|+|..
T Consensus 116 FglWS~~qK~V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek-~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 116 FGLWSPEQKSVSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEK-VKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred ccccChhhhhHHh---hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcc-eEEeCCCCCCCCceEEEecCCCCC
Confidence 6788766443221 11234577888999998 6678899999987543 3322 2334445578899999999853
Q ss_pred ---CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 243 ---SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 243 ---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
..++......++.+|.+... .++.-+.-.-...|+.+. +++++.|+.|+.+++|. +.+..+.++-..
T Consensus 191 G~~di~aV~DW~qTLSFy~LsG~-----~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT---R~GvrLGTvg~~ 262 (1081)
T KOG1538|consen 191 GRNDILAVADWGQTLSFYQLSGK-----QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT---RDGVRLGTVGEQ 262 (1081)
T ss_pred CccceEEEEeccceeEEEEecce-----eecccccCCCCchhheeccCCcEEEEccCCCceEEEe---ecCeEEeecccc
Confidence 47788888888888877521 222212222234577764 56999999999999995 455667777667
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCcc
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLV 361 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~~ 361 (362)
..+||.++..|+++ +++.|..||+|--+++.+.|+
T Consensus 263 D~WIWtV~~~PNsQ---------~v~~GCqDGTiACyNl~fSTV 297 (1081)
T KOG1538|consen 263 DSWIWTVQAKPNSQ---------YVVVGCQDGTIACYNLIFSTV 297 (1081)
T ss_pred ceeEEEEEEccCCc---------eEEEEEccCeeehhhhHHhHh
Confidence 78999999987754 588999999999999987765
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-16 Score=125.73 Aligned_cols=147 Identities=19% Similarity=0.337 Sum_probs=110.1
Q ss_pred EEEEeCCCeEEEEeCCCCCCcc------eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEee
Q 044557 199 VYTGSADKKIKVWRRSPGNKKH------SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGAL 272 (362)
Q Consensus 199 ~~s~~~dg~i~iw~~~~~~~~~------~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 272 (362)
+++|-++|.|.+||+.++.... +.......|..+|.++.+.+.-..=++|+.+..+..|++....+.+.+-...
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 5678899999999998863221 1233345689999999999877777888888889999887543333221111
Q ss_pred cCcccee--EEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc
Q 044557 273 RGHTKSI--LCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD 350 (362)
Q Consensus 273 ~~h~~~v--~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~ 350 (362)
.-....| ..+..++..+||++.|+.||+|.. ++..+++.|.-|+..|+++||+|+- .++|+||.|++
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVysw--rtl~pLAVLkyHsagvn~vAfspd~---------~lmAaaskD~r 316 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSW--RTLNPLAVLKYHSAGVNAVAFSPDC---------ELMAAASKDAR 316 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEe--ccCCchhhhhhhhcceeEEEeCCCC---------chhhhccCCce
Confidence 1111223 345556679999999999999985 4677899999999999999999863 47999999999
Q ss_pred EEEEec
Q 044557 351 IKVWQI 356 (362)
Q Consensus 351 i~~W~~ 356 (362)
|-+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=135.17 Aligned_cols=207 Identities=15% Similarity=0.224 Sum_probs=151.3
Q ss_pred eEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeC
Q 044557 136 CTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRR 213 (362)
Q Consensus 136 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~ 213 (362)
..+.+|++.|++++..|.|.+|++|+.||+||||.+.+++|+..+. ..+.|.||+|+|.+. +++++.+..+.|-+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 3456899999999999999999999999999999999999999886 456899999999875 455444444555443
Q ss_pred CCCC---------------------------------CcceeehhhhccccceeEEEEecCCCEEEEEcCCC---cEEEE
Q 044557 214 SPGN---------------------------------KKHSLVDVLERHNSGINALALSCDGSVLYSGACDR---SIIVW 257 (362)
Q Consensus 214 ~~~~---------------------------------~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~---~i~~w 257 (362)
.-|. ....-+...-.|..+|+++.|+..|.||++...|+ .|.+.
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 2220 00000011224788999999999999999887653 57788
Q ss_pred eccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCC
Q 044557 258 EKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDS 335 (362)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~ 335 (362)
++..... ...+.--.+.|.++.|.+. +++.++. +.||+|++.. ..+++.|..-...|..++++|.+++
T Consensus 552 QLSK~~s----Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k--qelvKkL~tg~kwiS~msihp~GDn--- 621 (733)
T KOG0650|consen 552 QLSKRKS----QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSK--QELVKKLLTGSKWISSMSIHPNGDN--- 621 (733)
T ss_pred ecccccc----cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhH--HHHHHHHhcCCeeeeeeeecCCCCe---
Confidence 8764321 1233334556788888764 4555544 6799999653 4557777777889999999988764
Q ss_pred CCCceEEEecCCCCcEEEEecccCc
Q 044557 336 SDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 336 ~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
|+.||.|+.+..+|++..+
T Consensus 622 ------li~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 622 ------LILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred ------EEEecCCCeeEEEEcccCc
Confidence 7789999999999997654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-16 Score=134.97 Aligned_cols=296 Identities=24% Similarity=0.338 Sum_probs=198.4
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeE---EEEEcCc-eeEEE
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVK---SLVVLAD-KLFSA 84 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~---~i~~~~~-~l~s~ 84 (362)
+...|.+|.+.|..|.|. |..++|||.|..|.+||-......+. +. ..|...+. -|.+.++ .++++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~------SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FE------SGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cc------cccccchhhhhccCCCCCcCceec
Confidence 455688999999999994 89999999999999999765432221 11 11222221 1222333 38899
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEEECC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSVSWD 163 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d 163 (362)
+.||.+++=.+....... .+.....|.++|.-++.-|+.. -|.++++|
T Consensus 206 s~dgqvr~s~i~~t~~~e-------------------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD 254 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVE-------------------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGED 254 (559)
T ss_pred cccCceeeeeecccccee-------------------------------cceecccccCccceeeecCCCCCcccccccc
Confidence 999999987653221100 0111235778888888888764 59999999
Q ss_pred CcEEEEECCCceEEEeee--ccCcc---cEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCc--ceeehhh-h-----c
Q 044557 164 RTIKIWRTSDFKCLESIT--NAHDD---AINAVALSDDG--DVYTGSADKKIKVWRRSPGNKK--HSLVDVL-E-----R 228 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~--~~h~~---~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~--~~~~~~~-~-----~ 228 (362)
+.+.-.|++....-..+. ..+.. ....++..|-. .+++++.|..+++||....... ...+..+ . .
T Consensus 255 ~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d 334 (559)
T KOG1334|consen 255 AVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVED 334 (559)
T ss_pred cceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccccc
Confidence 999999988764322221 12222 34677777765 4889999999999986543211 0001111 1 2
Q ss_pred cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC------c--EEEEEe-ecCccce--eEEEEEeC---CeEEEeeC
Q 044557 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG------N--ILVVGA-LRGHTKS--ILCMAVVS---DLVCSGSA 294 (362)
Q Consensus 229 h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~------~--~~~~~~-~~~h~~~--v~~~~~~~---~~~~s~s~ 294 (362)
..-.|++++|+.++.-|+++-.|-.|+++...-+.+ . ...+.. ++||... |..+.|-+ ++++|||.
T Consensus 335 ~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 335 DPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred CcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc
Confidence 234689999998888888888899999996433222 0 012222 6788754 67777743 59999999
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
-|.|-||+ ....+.+.-++|-..-|+||.=+ |-..+|||.|-|.-||||--
T Consensus 415 CGhIFiW~--K~t~eii~~MegDr~VVNCLEpH---------P~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 415 CGHIFIWD--KKTGEIIRFMEGDRHVVNCLEPH---------PHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cceEEEEe--cchhHHHHHhhcccceEeccCCC---------CCCchhhccCCccceeeecC
Confidence 99999998 34456666777766688887543 44568999999999999965
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-13 Score=123.39 Aligned_cols=277 Identities=14% Similarity=0.224 Sum_probs=158.1
Q ss_pred EEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe-cCCcEEEEecCCCCCCcccceee
Q 044557 32 LYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH-QDHKIRVWKINNQEPDHQKYTRL 108 (362)
Q Consensus 32 l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~ 108 (362)
.++...|+.|++||+.+. ..+. .. ..+. ..+....+.+.++ .|+.++ .++.|..|+++.... ....
T Consensus 5 y~~~~~~~~I~~~~~~~~-g~l~--~~---~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~----l~~~ 73 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE-GALT--LL---QVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA----LTFA 73 (330)
T ss_pred EEEcCCCCCEEEEEECCC-Ccee--ee---eEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc----eEEe
Confidence 344577999999998532 1111 00 0011 1123445555544 466654 578899998862110 0000
Q ss_pred eeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC-CCcEEEEECCCc-e---EEEeeecc
Q 044557 109 ATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW-DRTIKIWRTSDF-K---CLESITNA 183 (362)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-d~~i~iwd~~~~-~---~~~~~~~~ 183 (362)
... ...+....++++|++++|++++. ++.|.+|++++. . .+..+ .
T Consensus 74 ~~~----------------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~ 123 (330)
T PRK11028 74 AES----------------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII--E 123 (330)
T ss_pred eee----------------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--c
Confidence 000 01123457899999998888764 789999998642 1 22222 2
Q ss_pred CcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcce---eehhhhccccceeEEEEecCCCEEEEEcC-CCcEEEE
Q 044557 184 HDDAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHS---LVDVLERHNSGINALALSCDGSVLYSGAC-DRSIIVW 257 (362)
Q Consensus 184 h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~---~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~w 257 (362)
+......++++|+++ + ++...++.|.+||+.+...... ...... .......++|+|+|++++++.. +++|.+|
T Consensus 124 ~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~ 202 (330)
T PRK11028 124 GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVW 202 (330)
T ss_pred CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEE
Confidence 223456788999987 4 3555679999999976321110 000011 1234567999999999988876 8999999
Q ss_pred eccCCCCcEEEEEeecCc------cceeEEEEEeCC--eEEEe-eCCCcEEEeeCCCCc--eeeeeEecCCCCcEEEEEe
Q 044557 258 EKEEDDGNILVVGALRGH------TKSILCMAVVSD--LVCSG-SADKTIRIWRGIDRN--YTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 258 d~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~--~~~s~-s~D~~i~~W~~~~~~--~~~~~~l~~h~~~v~~~~~ 326 (362)
++....+....+..+..+ ......+.++++ +++++ ..++.|.+|+..... .+.++..... .....+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~ 281 (330)
T PRK11028 203 QLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNI 281 (330)
T ss_pred EEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEE
Confidence 997433333333333221 112234666654 56555 457899999864322 1222222111 23445666
Q ss_pred eecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 327 AIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 327 ~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+|++. +++++...+++|.+|+++.+
T Consensus 282 ~~dg~--------~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 282 DHSGK--------YLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred CCCCC--------EEEEEEccCCcEEEEEEcCC
Confidence 65543 45555556899999988643
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-14 Score=130.48 Aligned_cols=292 Identities=20% Similarity=0.296 Sum_probs=197.9
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEE
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRV 92 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~ 92 (362)
.|+-.+++++++ ++++|+|..||.|.+|.-...+ .. ......++.|...|.++.++.+ +|++|+..+.+-+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~--~~---~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS--DD---SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL 277 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccc--cc---cccceEEEecccccceeEEecCCceEeecccceEEEE
Confidence 466667777774 7899999999999999632210 11 1123456677778999988755 5999999999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
|.+.+++.. .+|+ -..+|..+.++||+.+.+...+|+.|.+-...
T Consensus 278 Wq~~T~~kq--------fLPR---------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 278 WQLETGKKQ--------FLPR---------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EeecCCCcc--------cccc---------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 998765421 1121 23567889999999999999999999999876
Q ss_pred CceEEEeee---c-------cCcccEEEEEEcC-CCcEEEEeCCCeEEEEeCCCCCCcceeehhhh-------cccccee
Q 044557 173 DFKCLESIT---N-------AHDDAINAVALSD-DGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE-------RHNSGIN 234 (362)
Q Consensus 173 ~~~~~~~~~---~-------~h~~~v~~v~~~~-~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------~h~~~v~ 234 (362)
+......+. . ...+-.+.++++| .+.++-.+..|.|.+||+.+......+..... .+.-+++
T Consensus 323 dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~it 402 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGIT 402 (792)
T ss_pred chhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeee
Confidence 544322221 1 1233456788888 45577788999999999987654433321111 2344677
Q ss_pred EEEEecCCCEEEEE--------cCCC--cEEEEeccCCCCcEEEEEe-ecCccceeEEEEEe----CCeEEEeeCCCcEE
Q 044557 235 ALALSCDGSVLYSG--------ACDR--SIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVV----SDLVCSGSADKTIR 299 (362)
Q Consensus 235 ~i~~s~~~~~l~s~--------~~d~--~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~----~~~~~s~s~D~~i~ 299 (362)
+++.+..|.+++|. ..|| .+++|-.........+... ..-|...+...++. .++.+|+|.||.+|
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 88888889999887 2333 4678977655444433222 22366555444442 23899999999999
Q ss_pred EeeCC--------CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 300 IWRGI--------DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 300 ~W~~~--------~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+|-+. ...+.|.+.=.-|..++.+++|+.+|. +++.|.|++|.+||...
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs----------lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS----------LLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc----------EEEEecCCEEEEecCCC
Confidence 99641 123555554445888999998876652 55777899999999865
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-14 Score=119.21 Aligned_cols=196 Identities=20% Similarity=0.306 Sum_probs=139.3
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceEEEeee-ccCcc---cEEEEEEcCCCcEEEEeCCCeEEEEeC-CCCCCcceeehh
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKCLESIT-NAHDD---AINAVALSDDGDVYTGSADKKIKVWRR-SPGNKKHSLVDV 225 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~h~~---~v~~v~~~~~~~~~s~~~dg~i~iw~~-~~~~~~~~~~~~ 225 (362)
.|+.+++++.+.|.-|++||.-+++....+. ..|.+ +..+++|+|||.-+-++....|++||+ .++..-......
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhh
Confidence 4788899999999999999999887644332 01222 456899999999777788999999998 444321111111
Q ss_pred h---hccccceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEee-CCCcE
Q 044557 226 L---ERHNSGINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGS-ADKTI 298 (362)
Q Consensus 226 ~---~~h~~~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s-~D~~i 298 (362)
. .+..+-+.+++|+|. ...++.|+.-..+=+|.-...+ . +..+-||.+.|+.+.|.+ +.+.+|+ .|-.|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-p---l~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-P---LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-c---eeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 1 122456788999995 4589999988888777654322 2 334568999999999864 4666666 47889
Q ss_pred EEeeCCCCceeeeeEecCCCC-cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 299 RIWRGIDRNYTCLAVLEGHRG-PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..||+.. ....+..|.+|.. .=..+.|.. .+.+.+|+||+.||.|++||+..
T Consensus 276 l~WDiR~-~~~pv~~L~rhv~~TNQRI~FDl-------d~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 276 LCWDIRY-SRDPVYALERHVGDTNQRILFDL-------DPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred EEEeehh-ccchhhhhhhhccCccceEEEec-------CCCCceeeccCCCccEEEEecCC
Confidence 9999743 3345667888877 444455543 35568999999999999999965
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.6e-15 Score=117.21 Aligned_cols=193 Identities=20% Similarity=0.277 Sum_probs=133.9
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCc---------eEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDF---------KCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSP 215 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~---------~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~ 215 (362)
|..-+++|.+++|++|..+|.|.+..+++. +....-..+|.+++..++|.+ ..+++++ ||.|+-|....
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-~~Lls~g-dG~V~gw~W~E 90 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-DFLLSGG-DGLVYGWEWNE 90 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-hheeecc-CceEEEeeehh
Confidence 455678999999999999999999987542 211112258999999999983 3355554 59999997654
Q ss_pred CCCcceee----hhhhccc-----cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE-e
Q 044557 216 GNKKHSLV----DVLERHN-----SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV-V 285 (362)
Q Consensus 216 ~~~~~~~~----~~~~~h~-----~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~-~ 285 (362)
........ .....|. -.|+++...|...-++.++.|+.++.||+++++ +...++||++.|-++.. +
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~----i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR----IQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE----EEEEEcCCcceeeeeeecc
Confidence 32211110 1111122 358899999988888888899999999998754 45678999999999876 2
Q ss_pred -CCeEEEeeCCCcEEEeeCCCCceeeeeEec---------CC-CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 286 -SDLVCSGSADKTIRIWRGIDRNYTCLAVLE---------GH-RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 286 -~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~---------~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
...+.||++||++|+||.. +.++++.+. .| ...|.+++.+.+ +|+.|+ --.+-+|
T Consensus 167 ~~~qilsG~EDGtvRvWd~k--t~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-----------WlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTK--TQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-----------WLVCGG-GPKLSLW 232 (325)
T ss_pred cCcceeecCCCccEEEEecc--ccceeEEeccccChhhcCcccCceeEEEeccCc-----------eEEecC-CCceeEE
Confidence 4489999999999999964 455565543 22 335777766432 344444 3568888
Q ss_pred ecc
Q 044557 355 QIS 357 (362)
Q Consensus 355 ~~~ 357 (362)
.+.
T Consensus 233 hLr 235 (325)
T KOG0649|consen 233 HLR 235 (325)
T ss_pred ecc
Confidence 874
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=124.44 Aligned_cols=298 Identities=18% Similarity=0.183 Sum_probs=179.6
Q ss_pred ccceeeeEec---CcEEEEecCCCeEEEeecCCCCccc---ceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcE
Q 044557 19 NSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSEL---DQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKI 90 (362)
Q Consensus 19 ~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i 90 (362)
..+|.++.|. .+.++||+.|..||+|.++...... ..++ ...+..|...+..+-++++ .|++|+.+|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y---~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY---LSSLSRHTRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE---eecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence 4578899884 2389999999999999987543222 1222 2334557778888888765 69999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
.+|......+. +... ..-.......++ ....+|.+.|..++|+|+++++++++-|+.+++||
T Consensus 90 ~lWk~~~~~~~----------~~d~----e~~~~ke~w~v~----k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~D 151 (434)
T KOG1009|consen 90 FLWKQGDVRIF----------DADT----EADLNKEKWVVK----KVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWD 151 (434)
T ss_pred EEEEecCcCCc----------cccc----hhhhCccceEEE----EEecccccchhhhhccCCCceeeeeeccceEEEEE
Confidence 99976531110 0000 000000000011 12246889999999999999999999999999999
Q ss_pred CCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee-----ehhhh----------cc----c
Q 044557 171 TSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL-----VDVLE----------RH----N 230 (362)
Q Consensus 171 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~-----~~~~~----------~h----~ 230 (362)
+..++.+..+. .|...+..++|.|-++ +++-+.|...+.+........+.. ..... -| .
T Consensus 152 v~~G~l~~~~~-dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk 230 (434)
T KOG1009|consen 152 VHAGQLLAILD-DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK 230 (434)
T ss_pred eccceeEeecc-ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh
Confidence 99999877664 7999999999999886 667777776666554322111000 00000 01 1
Q ss_pred cceeEEEEecCCCEEEEEcC----CC-----cEEEEeccCCCCcEEEEEeecCccceeEEEEEe----------------
Q 044557 231 SGINALALSCDGSVLYSGAC----DR-----SIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---------------- 285 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~----d~-----~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------- 285 (362)
.-...++|+|||..|++.+. .+ +.++|+...-.. ....+.+-......+.++
T Consensus 231 sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r---P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~ 307 (434)
T KOG1009|consen 231 SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR---PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLF 307 (434)
T ss_pred hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC---ceeecCCCCcceEEEEeeeeEEEecccccccccc
Confidence 22346789999999887642 12 223444221111 111222222222222221
Q ss_pred ---CC-eEEEeeCCCcEEEeeCCCCceeeeeE-ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 286 ---SD-LVCSGSADKTIRIWRGIDRNYTCLAV-LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 286 ---~~-~~~s~s~D~~i~~W~~~~~~~~~~~~-l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
.. .++.++. ..|.+||.. ...++.. -+-|=.+|++++|++++ ..|+..|.||-.-+
T Consensus 308 ~lpyrlvfaiAt~-~svyvydtq--~~~P~~~v~nihy~~iTDiaws~dg---------~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 308 VLPYRLVFAIATK-NSVYVYDTQ--TLEPLAVVDNIHYSAITDIAWSDDG---------SVLLVSSTDGFCSL 368 (434)
T ss_pred ccccceEEEEeec-ceEEEeccc--cccceEEEeeeeeeeecceeecCCC---------cEEEEeccCCceEE
Confidence 11 3444554 579999843 2222222 23477789999997654 35667788886544
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-15 Score=123.17 Aligned_cols=206 Identities=18% Similarity=0.275 Sum_probs=150.0
Q ss_pred eecCceeEEEEecCC-----CEEEEEECCCcEEEEECCC--ceE-EEe-----eeccCcccEEEEEEcCC--CcEEEEeC
Q 044557 140 HHVDAVSALALTKDE-----TLLYSVSWDRTIKIWRTSD--FKC-LES-----ITNAHDDAINAVALSDD--GDVYTGSA 204 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~-----~~l~s~s~d~~i~iwd~~~--~~~-~~~-----~~~~h~~~v~~v~~~~~--~~~~s~~~ 204 (362)
.|..+++.+.|.|+. .+|||+ +..+|+|.+.. .+. .+. ....+..++++..|+.- ..+.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 467788888898876 356654 46899999873 221 111 12235667888888753 34778999
Q ss_pred CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEE
Q 044557 205 DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMA 283 (362)
Q Consensus 205 dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~ 283 (362)
|-+-.|||++++.. ......+..|..+|..|+|...+ ..+++.|.||.+|+||++.-+....+ ..-.......+.++
T Consensus 172 DTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII-YE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 172 DTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII-YEDPSPSTPLLRLS 249 (364)
T ss_pred cCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE-ecCCCCCCcceeec
Confidence 99999999998632 22344556799999999999865 47889999999999999976655433 22222234566777
Q ss_pred Ee---CCeEEEeeCCC-cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 284 VV---SDLVCSGSADK-TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 284 ~~---~~~~~s~s~D~-~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++ ++++||-..|. .|.+-|+.. ...++..|.+|+..|++++|.|... ..|+|+++|+.+-+||+.-
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~-P~tpva~L~~H~a~VNgIaWaPhS~--------~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRV-PCTPVARLRNHQASVNGIAWAPHSS--------SHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecC-CCcceehhhcCcccccceEecCCCC--------ceeeecCCcceEEEEeccc
Confidence 75 45788877765 488888644 3456889999999999999998643 3599999999999999963
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=128.16 Aligned_cols=198 Identities=21% Similarity=0.260 Sum_probs=139.2
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
.+++|+++|..|++|+.||++|||+..+...+.... .|...|.++.|+|||+ +++.+.| ..+||+..++...+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 689999999999999999999999977655444333 6888999999999997 7778888 999999998855443321
Q ss_pred hhhccccceeEEEEecCC-----CEEEEEcCCCcEEEEeccCCCC-cEEEEEeecCccceeEEEEEeC--CeEEEeeCCC
Q 044557 225 VLERHNSGINALALSCDG-----SVLYSGACDRSIIVWEKEEDDG-NILVVGALRGHTKSILCMAVVS--DLVCSGSADK 296 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~~~-----~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~ 296 (362)
...+.-...+.|+.|+ ...+....-+.|+.|++..-.. +.........-.+.|.+++++. .+++.|+.||
T Consensus 226 --~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 226 --FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred --cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 2233445667787776 2333344455677776542111 1111111112234688888864 5999999999
Q ss_pred cEEEeeCCCCceeeee-EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 297 TIRIWRGIDRNYTCLA-VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~-~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.|-+++.. ..++++ .-+.|...|+++.|+|+.. ++++.|.|.++.|-.++.
T Consensus 304 sVai~~~~--~lq~~~~vk~aH~~~VT~ltF~Pdsr---------~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SVAIYDAK--SLQRLQYVKEAHLGFVTGLTFSPDSR---------YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEEec--eeeeeEeehhhheeeeeeEEEcCCcC---------cccccccCCceeEEEEee
Confidence 99999853 344444 3358999999999998754 467778888888877654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-15 Score=122.07 Aligned_cols=185 Identities=16% Similarity=0.205 Sum_probs=138.4
Q ss_pred eecCceeEEEEec-CCCEEEEEECCCcEEEEECCCceE--EEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCC
Q 044557 140 HHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFKC--LESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRS 214 (362)
Q Consensus 140 ~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~ 214 (362)
.+..++++..|+. +-+++.++|-|-+..|||++++.. +++-..+|..+|..++|..++. |++.+.||.||+||+.
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 3556788888876 457899999999999999998743 4554558999999999998774 8899999999999998
Q ss_pred CCCCcceeehhhhccccceeEEEEec-CCCEEEEEcCCC-cEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeE
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDR-SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLV 289 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~ 289 (362)
..+.. +++..-.....+.-.++|++ |-+++++-..|. .|.+-|++.+.. .+..+.+|...|..++|.+ ..+
T Consensus 228 ~leHS-TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t---pva~L~~H~a~VNgIaWaPhS~~hi 303 (364)
T KOG0290|consen 228 SLEHS-TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT---PVARLRNHQASVNGIAWAPHSSSHI 303 (364)
T ss_pred ccccc-eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc---ceehhhcCcccccceEecCCCCcee
Confidence 76533 34433333355777788887 557888887765 588999986543 4667899999999999964 489
Q ss_pred EEeeCCCcEEEeeCCCCce----eeeeEecCCCCcEEEEEeeec
Q 044557 290 CSGSADKTIRIWRGIDRNY----TCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 290 ~s~s~D~~i~~W~~~~~~~----~~~~~l~~h~~~v~~~~~~~~ 329 (362)
+|++.|..+.+||+..... .++-.+ .-...|+.++|++.
T Consensus 304 ctaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 304 CTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSS 346 (364)
T ss_pred eecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeeccc
Confidence 9999999999999643111 111112 24557888888754
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=136.42 Aligned_cols=250 Identities=22% Similarity=0.350 Sum_probs=155.4
Q ss_pred ccceeeeEec----CcEEEEecCCCeEEEeecCCCC---cccceeeeccceeEEeecceeEEEEEc--CceeEEEecCCc
Q 044557 19 NSYVSSLALA----GKFLYTGSSDNEVRSWDCNTFS---SELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAHQDHK 89 (362)
Q Consensus 19 ~~~V~~l~~~----~~~l~t~s~Dg~i~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~~dg~ 89 (362)
...|+.+.+- ..++++|+.||.||||+--... .++...+..-...+....+...-+.+. ...|++++.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 3567888772 3589999999999999732111 111111111000001111111111232 235777777899
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe-cCCCEEEEEECCCcEEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT-KDETLLYSVSWDRTIKI 168 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~d~~i~i 168 (362)
|++||..... ....+|... ..-++++.-+ +.|+.+++|-.||.||+
T Consensus 1189 IRIWDa~~E~-------~~~diP~~s--------------------------~t~vTaLS~~~~~gn~i~AGfaDGsvRv 1235 (1387)
T KOG1517|consen 1189 IRIWDAHKEQ-------VVADIPYGS--------------------------STLVTALSADLVHGNIIAAGFADGSVRV 1235 (1387)
T ss_pred EEEEecccce-------eEeecccCC--------------------------CccceeecccccCCceEEEeecCCceEE
Confidence 9999986432 122222211 1223444332 34789999999999999
Q ss_pred EECCCce--EEEeeeccCccc--EEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceeehhhhccc--c-ceeEEEEe
Q 044557 169 WRTSDFK--CLESITNAHDDA--INAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHN--S-GINALALS 239 (362)
Q Consensus 169 wd~~~~~--~~~~~~~~h~~~--v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~--~-~v~~i~~s 239 (362)
||.+... +.-.....|... |..+.+.+.| ++++|+.||.|++||+.... ...... ...|. + ..+++.++
T Consensus 1236 yD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~-iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1236 YDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLT-IVAHWEYGSALTALTVH 1313 (1387)
T ss_pred eecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccce-eeeccccCccceeeeec
Confidence 9987532 232333568776 8899998876 49999999999999997632 222221 12222 2 48999999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEE--EeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVV--GALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
++-..+++|+. +.|++|++..+.-+.... +.+....+.+.|++|.+. +++.|+.|.+|.+|...
T Consensus 1314 ~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1314 EHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred cCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 99999999999 999999986432111100 001112345689999876 78999999999999853
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-12 Score=122.56 Aligned_cols=115 Identities=23% Similarity=0.368 Sum_probs=94.5
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCC---ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD---FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~---~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~ 215 (362)
.|.-.++|.+++|+++++|+|-.||.|.+|.--. ...-.+..+-|...|.+++|+++|. +++|+..|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4666789999999999999999999999996322 1222233446888999999999996 99999999999999988
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEec
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
++ +++ +++-.++|..+.++||+.+.+....|+.|.+-.+
T Consensus 283 ~~--kqf---LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 283 GK--KQF---LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred CC--ccc---ccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 76 233 3455789999999999999999999999988764
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-13 Score=111.65 Aligned_cols=237 Identities=13% Similarity=0.111 Sum_probs=162.9
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCC-cccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFS-SELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRV 92 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~ 92 (362)
-..+|++-+|. ...+|.+-....|.||...... .+. .+.+..|...+..+++.+ ++|++++.|..-.+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-------~htls~Hd~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-------AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-------ceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence 35789999995 5689999899999999865533 111 223345667788887764 68999999999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
|....+..- .++..+..+....+++.|+|.++.||+||.-+.|.||-.+
T Consensus 82 w~~~~~~~W-------------------------------kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E 130 (361)
T KOG1523|consen 82 WTQPSGGTW-------------------------------KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE 130 (361)
T ss_pred cccCCCCee-------------------------------ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence 976322110 0122345678899999999999999999999999999877
Q ss_pred CceEE---EeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCC-----CCC---------Ccceeehhhhcccccee
Q 044557 173 DFKCL---ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRS-----PGN---------KKHSLVDVLERHNSGIN 234 (362)
Q Consensus 173 ~~~~~---~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~-----~~~---------~~~~~~~~~~~h~~~v~ 234 (362)
..+-. +.+.+.+...|.++.|+|++- +++|+.|++.++|... ... +...+........+.|.
T Consensus 131 ~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh 210 (361)
T KOG1523|consen 131 QENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVH 210 (361)
T ss_pred cccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCcee
Confidence 54321 224456788899999999997 6788999999999632 100 00011222223456799
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-CeEEEeeCC
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-DLVCSGSAD 295 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~s~s~D 295 (362)
.+.|+|+|..|+-.+.|.++.+-|...+......+ .....+.+++.|.. ..++.++.|
T Consensus 211 ~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~---~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 211 GVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV---ATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred eeEeCCCCCEeeEecCCCceEEeecCCCchhccch---hhccCCceeeEeecCCceeecCCC
Confidence 99999999999999999999999876543222221 11224445555532 244444444
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-14 Score=117.32 Aligned_cols=208 Identities=16% Similarity=0.216 Sum_probs=157.8
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCc---eEEEeeeccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF---KCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~ 216 (362)
-.++|+|.+|++|...+|.+-....|.||..... +..+++. .|...|+.|.|+|.. ++++++.|..-.+|...++
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 3578999999999999999999999999987654 4556564 799999999999987 6999999999999987333
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe-ecCccceeEEEEEeCC--eEEEee
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVVSD--LVCSGS 293 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~--~~~s~s 293 (362)
. ..+..-++-+++..++++.|+|.+..+++||.-..|.+|-.+.++ ...+... -+-+...|++++|.++ +++.||
T Consensus 88 ~-~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN-dWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 G-TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN-DWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred C-eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc-ceehhhhhCCccccceeeeeccCCcceecccc
Confidence 2 112222456788999999999999999999999999999887543 3322111 1234566899999766 899999
Q ss_pred CCCcEEEeeCC-----CC-----------ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 294 ADKTIRIWRGI-----DR-----------NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 294 ~D~~i~~W~~~-----~~-----------~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.|+..|++... ++ -+.++..+..-.+.|..+.|+|++.+ |+=.++|+++.+=|..
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~---------lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR---------LAWVGHDSTVSFVDAA 236 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE---------eeEecCCCceEEeecC
Confidence 99999999731 11 11223334456678999999887654 6677889998888877
Q ss_pred cCc
Q 044557 358 FPL 360 (362)
Q Consensus 358 ~~~ 360 (362)
.|.
T Consensus 237 ~p~ 239 (361)
T KOG1523|consen 237 GPS 239 (361)
T ss_pred CCc
Confidence 664
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-13 Score=127.20 Aligned_cols=209 Identities=15% Similarity=0.169 Sum_probs=145.7
Q ss_pred ecCceeEEEEecCC-CEEEEEECCCcEEEEECCCceE-----EEeeeccCcccEEEEEEcCC--C-cEEEEeCCCeEEEE
Q 044557 141 HVDAVSALALTKDE-TLLYSVSWDRTIKIWRTSDFKC-----LESITNAHDDAINAVALSDD--G-DVYTGSADKKIKVW 211 (362)
Q Consensus 141 h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~-----~~~~~~~h~~~v~~v~~~~~--~-~~~s~~~dg~i~iw 211 (362)
-...|+|+.|+|.. .+++.|..+|.|.+||++.+.. +......|..++..+.|..+ + .+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 35679999999854 6788889999999999987643 23344568999999998643 2 49999999999999
Q ss_pred eCCCCCCcce-eehhhh-------ccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcE----EEEEeecCccce
Q 044557 212 RRSPGNKKHS-LVDVLE-------RHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNI----LVVGALRGHTKS 278 (362)
Q Consensus 212 ~~~~~~~~~~-~~~~~~-------~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~h~~~ 278 (362)
+++.-..... ...... .....++++.|.+ +...++.|..+|.|.--+........ ........|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8764322110 100001 1234678899987 56788899999988763333222211 112234567788
Q ss_pred eEEEEEeC---CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 279 ILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 279 v~~~~~~~---~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|.++.+++ .++.|++ |-+||||+... ...++-.+.-+...|.+++|+|.+. ..++++..||.|.+||
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~-~~~Pl~~~~~~~~~v~~vaWSptrp--------avF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDV-IASPLLSLDSSPDYVTDVAWSPTRP--------AVFATVDGDGNLDIWD 470 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccC-CCCcchhhhhccceeeeeEEcCcCc--------eEEEEEcCCCceehhh
Confidence 88887753 4666666 99999998531 2344556677888899999998653 4789999999999999
Q ss_pred cccC
Q 044557 356 ISFP 359 (362)
Q Consensus 356 ~~~~ 359 (362)
+...
T Consensus 471 Ll~~ 474 (555)
T KOG1587|consen 471 LLQD 474 (555)
T ss_pred hhcc
Confidence 9644
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=130.99 Aligned_cols=202 Identities=19% Similarity=0.230 Sum_probs=133.4
Q ss_pred ceeEEEEec-CCCEEEEEECCCcEEEEECCCceE------EEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCC
Q 044557 144 AVSALALTK-DETLLYSVSWDRTIKIWRTSDFKC------LESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRS 214 (362)
Q Consensus 144 ~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~------~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~ 214 (362)
.|+.+.|+| |...||.+++||.|++|.+..+-. ...+...|...|.++.|+|=- -|+++++|-+|++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 367788888 556899999999999999865321 123445799999999999853 37899999999999998
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCCeEEEee
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSDLVCSGS 293 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~s~s 293 (362)
++.... .+.+|...|..++|||||+.+++.+.||+|++|.-++.+.....-....| ...+|. ++..+.+++..+
T Consensus 709 ~~~~~~----~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~-wacdgr~viv~G 783 (1012)
T KOG1445|consen 709 NAKLYS----RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARIL-WACDGRIVIVVG 783 (1012)
T ss_pred hhhhhh----eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEE-EEecCcEEEEec
Confidence 875433 45689999999999999999999999999999998765443221111111 112222 233455555444
Q ss_pred C----CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc-cCCCCCceEEEecCCCCcEEEEeccc
Q 044557 294 A----DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR-CDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 294 ~----D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~-~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
- .+.|.+|+...-....+. +..+..+|+--. ....+.+-++++|-.|..|.+|.+-+
T Consensus 784 fdk~SeRQv~~Y~Aq~l~~~pl~--------t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLDLRPLY--------TQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred ccccchhhhhhhhhhhccCCcce--------eeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 3 466778874221111111 111222221100 01134556889999999999998843
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-15 Score=129.65 Aligned_cols=166 Identities=20% Similarity=0.321 Sum_probs=129.8
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--c-EEEEeCCCeEEEEeC
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--D-VYTGSADKKIKVWRR 213 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~-~~s~~~dg~i~iw~~ 213 (362)
++.+|++=|.|+.|+.+|.+|++||.|-.+.|||.-..+.+..+..+|...|.++.|-|.. + +++|+.|..|++||+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 4568999999999999999999999999999999999899999988999999999998753 3 789999999999999
Q ss_pred CCCCC------cceeehhhhccccceeEEEEecCC-CEEEEEcCCCcEEEEeccCCCCcE------EEEEeecCccceeE
Q 044557 214 SPGNK------KHSLVDVLERHNSGINALALSCDG-SVLYSGACDRSIIVWEKEEDDGNI------LVVGALRGHTKSIL 280 (362)
Q Consensus 214 ~~~~~------~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~------~~~~~~~~h~~~v~ 280 (362)
...+. ..........|...|..|+..|++ ..+.+++.||+||-||++++.... ..+..+....-...
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk 204 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK 204 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence 75221 112234456788999999999988 788999999999999998632110 00000101112245
Q ss_pred EEEEeC---CeEEEeeCCCcEEEee
Q 044557 281 CMAVVS---DLVCSGSADKTIRIWR 302 (362)
Q Consensus 281 ~~~~~~---~~~~s~s~D~~i~~W~ 302 (362)
|+..++ .+++.|+.|--+++||
T Consensus 205 ~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 205 CLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred eeeecCCCCceEEecCCCchhhhhh
Confidence 777664 4899999999999998
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-12 Score=111.53 Aligned_cols=254 Identities=15% Similarity=0.211 Sum_probs=145.2
Q ss_pred eeeecccCccceeeeEe--cCcEEEEe-cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 11 CLTTLKGHNSYVSSLAL--AGKFLYTG-SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~--~~~~l~t~-s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
+++++.. .+....+.+ ++++|+.+ ..++.|.+|++.. ...+. ... . .. ..+....+.+.++ .+++++
T Consensus 27 ~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-~g~l~--~~~--~-~~-~~~~p~~i~~~~~g~~l~v~~ 98 (330)
T PRK11028 27 LLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-DGALT--FAA--E-SP-LPGSPTHISTDHQGRFLFSAS 98 (330)
T ss_pred eeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECC-CCceE--Eee--e-ec-CCCCceEEEECCCCCEEEEEE
Confidence 4455542 344556666 47777555 4589999999852 11111 000 0 00 0123345666644 477765
Q ss_pred c-CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE-ECC
Q 044557 86 Q-DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV-SWD 163 (362)
Q Consensus 86 ~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~d 163 (362)
. ++.|.+|+++....... ..... .+.....+++++|++++++++ ..+
T Consensus 99 ~~~~~v~v~~~~~~g~~~~---~~~~~----------------------------~~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 99 YNANCVSVSPLDKDGIPVA---PIQII----------------------------EGLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred cCCCeEEEEEECCCCCCCC---ceeec----------------------------cCCCcccEeEeCCCCCEEEEeeCCC
Confidence 4 88999999863221100 00000 011234567899999988655 466
Q ss_pred CcEEEEECCCceEEEe-----eeccCcccEEEEEEcCCCc-EEEEeC-CCeEEEEeCCCCCCcceeehhhhc------cc
Q 044557 164 RTIKIWRTSDFKCLES-----ITNAHDDAINAVALSDDGD-VYTGSA-DKKIKVWRRSPGNKKHSLVDVLER------HN 230 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~-----~~~~h~~~v~~v~~~~~~~-~~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~------h~ 230 (362)
+.|.+||+++...+.. ...........++|+|+|+ ++++.. +++|.+|+++...........+.. +.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 9999999976332211 1111223457899999998 555554 899999999743211122211111 11
Q ss_pred cceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEee-CCCcEEEeeCC
Q 044557 231 SGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGS-ADKTIRIWRGI 304 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s-~D~~i~~W~~~ 304 (362)
.....+.++|+|++|+++.. ++.|.+|++.........+...... .....+.+++ .+++++. .+++|.+|+..
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 12346889999999999864 7899999987654433333333221 2334566654 4555444 58999999854
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-11 Score=105.10 Aligned_cols=195 Identities=16% Similarity=0.212 Sum_probs=133.2
Q ss_pred eeeeEecCcEEEEecCCCe--EEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCC
Q 044557 22 VSSLALAGKFLYTGSSDNE--VRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQE 99 (362)
Q Consensus 22 V~~l~~~~~~l~t~s~Dg~--i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~ 99 (362)
|--..|+..++|-.+.+.. +++.+++......... ....+.++.++.++|+.+=++. |.+||++.-+
T Consensus 49 IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~----------fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mk 117 (391)
T KOG2110|consen 49 IVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF----------FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMK 117 (391)
T ss_pred EEEeecccceeEEEecCCCceEEEEEcccCceEEEEe----------cCCceEEEEEccceEEEEEccc-EEEEecccce
Confidence 3344456666666665544 7888765433222222 2346777778888888777665 9999997543
Q ss_pred CCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE--CCCcEEEEECCCceEE
Q 044557 100 PDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS--WDRTIKIWRTSDFKCL 177 (362)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~ 177 (362)
..+ ++.. ...+...+.++++++.+.+||--+ .-|.|.|||..+.+.+
T Consensus 118 lLh-------TI~t------------------------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v 166 (391)
T KOG2110|consen 118 LLH-------TIET------------------------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV 166 (391)
T ss_pred eeh-------hhhc------------------------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee
Confidence 211 1100 001223345566666666777532 3489999999999888
Q ss_pred EeeeccCcccEEEEEEcCCCc-EEEEeCCCe-EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEE
Q 044557 178 ESITNAHDDAINAVALSDDGD-VYTGSADKK-IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 178 ~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~-i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
..+. +|.+++-+++|+++|. ++|+++.|+ ||||.+.++.....+-.- .-...|.+++|+|++++|++.|..++|+
T Consensus 167 ~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG--~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 167 NTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG--TYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred eEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC--ceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 8876 8999999999999998 778888885 799999887643332111 1134578999999999999999999999
Q ss_pred EEeccC
Q 044557 256 VWEKEE 261 (362)
Q Consensus 256 ~wd~~~ 261 (362)
+|.++.
T Consensus 244 iFKL~~ 249 (391)
T KOG2110|consen 244 IFKLEK 249 (391)
T ss_pred EEEecc
Confidence 998753
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=117.66 Aligned_cols=164 Identities=12% Similarity=0.145 Sum_probs=124.5
Q ss_pred EeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC------ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEE
Q 044557 138 WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD------FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKV 210 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~------~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~i 210 (362)
+.+|.+-|.++.|+.++++|++|+.|..+++|++.. .+++......|...|.|++|.-.++ +++|..+++|.+
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 357999999999999999999999999999999853 4566656667888999999987776 889999999999
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---C
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---D 287 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~ 287 (362)
-|+++..... ........+.|..+..+|....+++.+.++.|.+||.+........+ .+.........+-|.+ .
T Consensus 132 HDiEt~qsi~--V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 132 HDIETKQSIY--VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eecccceeee--eecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-eecCCCccceeeeecCCCce
Confidence 9998754221 11112234589999999999999999999999999988644222111 1122233345555654 4
Q ss_pred eEEEeeCCCcEEEeeCC
Q 044557 288 LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~ 304 (362)
+|++.+.-+.+-+||..
T Consensus 209 Li~~~~~~~G~~~~D~R 225 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRR 225 (609)
T ss_pred eEEeccccCCCCceeec
Confidence 89999999999999853
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=117.92 Aligned_cols=193 Identities=20% Similarity=0.252 Sum_probs=134.9
Q ss_pred EEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEE
Q 044557 72 KSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALA 149 (362)
Q Consensus 72 ~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 149 (362)
..++++++ .+++++.||++|+|+....... .....|...|.++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~----------------------------------l~e~~~~~eV~DL~ 193 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI----------------------------------LEEIAHHAEVKDLD 193 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh----------------------------------hhhHhhcCccccce
Confidence 34455544 5999999999999996432210 01135778899999
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEeeec-cCcccEEEEEEcCCC-----cEEEE-eCCCeEEEEeCCCCCCc--c
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLESITN-AHDDAINAVALSDDG-----DVYTG-SADKKIKVWRRSPGNKK--H 220 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~h~~~v~~v~~~~~~-----~~~s~-~~dg~i~iw~~~~~~~~--~ 220 (362)
|+||+++|++-+.| ..+||+++++.++..... .-..-...+.|+.++ ++++. ..-+.|+.|++...... .
T Consensus 194 FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l 272 (398)
T KOG0771|consen 194 FSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL 272 (398)
T ss_pred eCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc
Confidence 99999999999999 999999999866654431 122234567787665 33332 33456666665443321 1
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i 298 (362)
....... ....|+++++++||++++.|+.||.|-+++..+-+. ....-+.|...|+.+.|+|+ .+++.|.|..+
T Consensus 273 ~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~---~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~ 348 (398)
T KOG0771|consen 273 RLRKKIK-RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR---LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEA 348 (398)
T ss_pred chhhhhh-ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee---eEeehhhheeeeeeEEEcCCcCcccccccCCce
Confidence 1111222 345799999999999999999999999999875332 22234679999999999886 78889999888
Q ss_pred EEeeC
Q 044557 299 RIWRG 303 (362)
Q Consensus 299 ~~W~~ 303 (362)
.+-++
T Consensus 349 ~v~~l 353 (398)
T KOG0771|consen 349 AVTKL 353 (398)
T ss_pred eEEEE
Confidence 88874
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.6e-13 Score=118.48 Aligned_cols=167 Identities=18% Similarity=0.224 Sum_probs=118.7
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~ 218 (362)
.|.+.+.|-.|+|||.-|+++++||.|++|.-.. +++........+|.|++|.|+.. ++-+ ..+.+.|=-+....
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~- 177 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANS- 177 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeeccccc-
Confidence 5888899999999999999999999999997443 22222224567899999999876 3332 33344443333221
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCc
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKT 297 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~ 297 (362)
+.+ ..+.|.+-|-++.|++....+++||.|-..++||.... .+.+-..|.-+|++++|.++ .++.+|. ++
T Consensus 178 --k~i-~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-----~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt 248 (737)
T KOG1524|consen 178 --KII-RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-----NLFTSAAEEYAITSVAFNPEKDYLLWSY-NT 248 (737)
T ss_pred --cee-EEeccCcEEEEeecCccccceeecCCceeEEeecccCc-----ccccCChhccceeeeeeccccceeeeee-ee
Confidence 122 23579999999999999999999999999999997532 22334568889999999987 3444443 34
Q ss_pred EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc
Q 044557 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR 332 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~ 332 (362)
.|+= +...+.|..++|++|+.+
T Consensus 249 ~R~~-------------~p~~GSifnlsWS~DGTQ 270 (737)
T KOG1524|consen 249 ARFS-------------SPRVGSIFNLSWSADGTQ 270 (737)
T ss_pred eeec-------------CCCccceEEEEEcCCCce
Confidence 4421 134667999999988754
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-13 Score=128.09 Aligned_cols=196 Identities=21% Similarity=0.296 Sum_probs=147.7
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEE---EcCCC-cEEEEeCCCeEEEEeCCCCCCcc
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVA---LSDDG-DVYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~---~~~~~-~~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
+....+..+.+.++.++.++.+-+||........++.........+++ ++++. ++++|+.-+.|.+|+....++.
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p- 168 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP- 168 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc-
Confidence 333455566778889999999999999888776665432222222222 23433 3788999999999998733221
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRI 300 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~ 300 (362)
. .+.+|.+.+.++.++.||+++++.|.|+++|+|++++.+... ...-+|+.+|..+.+.++.++|+++|.+.++
T Consensus 169 ~---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n~i~t~gedctcrv 242 (967)
T KOG0974|consen 169 I---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPNRIITVGEDCTCRV 242 (967)
T ss_pred c---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccceeEEeccceEEEE
Confidence 1 467899999999999999999999999999999998754321 3455899999999998889999999999999
Q ss_pred eeCCCCceeeeeEecCCCC-cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 301 WRGIDRNYTCLAVLEGHRG-PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
|+... ..+..+.+|.. .|+.++..+. ..+++|++.|+.+++|++...
T Consensus 243 W~~~~---~~l~~y~~h~g~~iw~~~~~~~---------~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNG---TQLEVYDEHSGKGIWKIAVPIG---------VIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eeccc---ceehhhhhhhhcceeEEEEcCC---------ceEEEeeccCcchhhhhhhcc
Confidence 97543 33447777754 6788776533 357899999999999998543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=117.89 Aligned_cols=160 Identities=26% Similarity=0.445 Sum_probs=126.9
Q ss_pred cccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCc-----ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEE
Q 044557 185 DDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKK-----HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257 (362)
Q Consensus 185 ~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~-----~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~w 257 (362)
..++.++.|.++. .++||+.|..|++|.+...... -.....+..|...|+.+.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 3578888888764 5899999999999987654432 23456788899999999999999999999999999999
Q ss_pred ecc--------C----CCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEE
Q 044557 258 EKE--------E----DDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKC 323 (362)
Q Consensus 258 d~~--------~----~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~ 323 (362)
... . ..+.+.....+.+|...|..++|+++ ++++++.|..+++||. ..+...+.+.+|..-|..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv--~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV--HAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe--ccceeEeeccccccccce
Confidence 765 1 12335566778899999999999765 8999999999999996 356778999999999999
Q ss_pred EEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 324 LAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+++.|-. +++++=|.|...+...
T Consensus 171 vawDpl~---------qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 171 VAWDPLN---------QYVASKSSDRHPEGFS 193 (434)
T ss_pred eecchhh---------hhhhhhccCcccceee
Confidence 9887654 3466666666444443
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.1e-13 Score=117.00 Aligned_cols=136 Identities=21% Similarity=0.291 Sum_probs=103.6
Q ss_pred cCceeEEEEecCC-CEEEEEECCCcEEEEECCC--------------ce---E-----------EEeeeccCcccEEEEE
Q 044557 142 VDAVSALALTKDE-TLLYSVSWDRTIKIWRTSD--------------FK---C-----------LESITNAHDDAINAVA 192 (362)
Q Consensus 142 ~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~--------------~~---~-----------~~~~~~~h~~~v~~v~ 192 (362)
+..++|+.|-|.+ ..|+.+-.+|.+.+||.+- +. . +..+. .-.+.|+..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~-~~~g~in~f~ 297 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH-IGEGSINEFA 297 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE-ecccccccee
Confidence 4689999998755 4566667899999997531 00 0 01111 1234688899
Q ss_pred EcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe
Q 044557 193 LSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271 (362)
Q Consensus 193 ~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 271 (362)
|+|||+ |++.+.||.+||||..+.+ +...++.--+...|++|||||++|++||.|--|.+|.+.+. .++..
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~e----Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er----RVVAR 369 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQE----LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER----RVVAR 369 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHH----HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc----eEEEe
Confidence 999997 8899999999999987653 34444444678999999999999999999999999998753 25556
Q ss_pred ecCccceeEEEEEeC
Q 044557 272 LRGHTKSILCMAVVS 286 (362)
Q Consensus 272 ~~~h~~~v~~~~~~~ 286 (362)
=.||...|..++|++
T Consensus 370 GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFDP 384 (636)
T ss_pred ccccccceeeEeecc
Confidence 679999999999986
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-12 Score=119.73 Aligned_cols=232 Identities=19% Similarity=0.159 Sum_probs=143.1
Q ss_pred CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC---CcEEEEecCCCCCCcccceeeeecc
Q 044557 38 DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD---HKIRVWKINNQEPDHQKYTRLATLP 112 (362)
Q Consensus 38 Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~ 112 (362)
+..|.+||...... ..+..+...+....++++ .|+.++.+ ..|.+||+..+... .+..
T Consensus 183 ~~~i~i~d~dg~~~----------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-----~l~~-- 245 (429)
T PRK01742 183 PYEVRVADYDGFNQ----------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-----VVAS-- 245 (429)
T ss_pred eEEEEEECCCCCCc----------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-----EEec--
Confidence 57899999754321 111223445666677665 46665543 36999998654310 0100
Q ss_pred CCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEE--ECCCceEEEeeeccCcccEE
Q 044557 113 TLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIW--RTSDFKCLESITNAHDDAIN 189 (362)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iw--d~~~~~~~~~~~~~h~~~v~ 189 (362)
..+.....+|+|||+.|+.++ .++.+.|| |+.+++. ..+. .+...+.
T Consensus 246 ----------------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~ 295 (429)
T PRK01742 246 ----------------------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNT 295 (429)
T ss_pred ----------------------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcC
Confidence 011223578999999887764 68876666 5655543 3343 3555677
Q ss_pred EEEEcCCCc-EE-EEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEE
Q 044557 190 AVALSDDGD-VY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNIL 267 (362)
Q Consensus 190 ~v~~~~~~~-~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 267 (362)
...|+|+|+ ++ ++..+|...||++.......... .+.. ....|+|||++|+..+.++ +..||+.++...
T Consensus 296 ~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-- 366 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-- 366 (429)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE--
Confidence 899999997 44 44467888999875433222222 2222 3578999999999888765 556898764321
Q ss_pred EEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 268 VVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 268 ~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
.+. ..+. .....|++ .+++.++.++.+++|......+.....+.+|...+...+|+|-
T Consensus 367 ~lt--~~~~--~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 367 VLS--STFL--DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred Eec--CCCC--CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 111 1111 23344554 4899999999999887544445567788888888888888763
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-10 Score=97.59 Aligned_cols=152 Identities=19% Similarity=0.302 Sum_probs=108.9
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc--CcccEEEEEEcCCCcEEE---EeCCCeEEEEeCCCC
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA--HDDAINAVALSDDGDVYT---GSADKKIKVWRRSPG 216 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~s---~~~dg~i~iw~~~~~ 216 (362)
...|.++.++.+ .|+++=++. |.|||+++.+.++++..- +...+.++.+++.+..++ ....|.|.+||..+-
T Consensus 87 pt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 87 PTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 356778887654 566555544 999999999999887643 333344444444443332 345789999998765
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc-EEEEeccCCCCcEEEEEeec-Cc-cceeEEEEEeCC--eEEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS-IIVWEKEEDDGNILVVGALR-GH-TKSILCMAVVSD--LVCS 291 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~-~h-~~~v~~~~~~~~--~~~s 291 (362)
.. ...+..|.+++.+++|+++|.+||+||..|+ ||++...+++. +..++ |- ...|.+++|+++ +|+.
T Consensus 164 ~~----v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k----l~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 164 QP----VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK----LYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred ee----eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE----eeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 42 3345689999999999999999999999998 69999876542 22222 21 345788899765 8888
Q ss_pred eeCCCcEEEeeCC
Q 044557 292 GSADKTIRIWRGI 304 (362)
Q Consensus 292 ~s~D~~i~~W~~~ 304 (362)
.|..++|.++++.
T Consensus 236 sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 236 SSNTETVHIFKLE 248 (391)
T ss_pred ecCCCeEEEEEec
Confidence 8999999999864
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=115.58 Aligned_cols=163 Identities=22% Similarity=0.295 Sum_probs=119.8
Q ss_pred CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccc
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG 232 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~ 232 (362)
...|+.++.||.+.|-+-. ++..+.+ .+|.+++.+-.|+|+|. ++++++||.|++|... |- +-.++.....+
T Consensus 75 ~d~~~i~s~DGkf~il~k~-~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GM----LRStl~Q~~~~ 147 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-ARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GM----LRSTVVQNEES 147 (737)
T ss_pred cceEEEEcCCceEEEeccc-chhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEecc-ch----HHHHHhhcCce
Confidence 3467788899999987633 3333333 58999999999999998 9999999999999753 32 22233445678
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceee
Q 044557 233 INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTC 310 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~ 310 (362)
|.|++|.|+..-++-+.. +.+.+=.+..+. .+-.++.|.+-|+|+.|++ ++++||++|-..|+||... ..
T Consensus 148 v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~----k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G---~~ 219 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQG-GHISIKPLAANS----KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG---AN 219 (737)
T ss_pred eEEEEECCCCCceEEecC-CeEEEeeccccc----ceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC---cc
Confidence 999999998765554432 345454444322 2335789999999999974 6999999999999999643 33
Q ss_pred eeEecCCCCcEEEEEeeecCC
Q 044557 311 LAVLEGHRGPVKCLAAAIDND 331 (362)
Q Consensus 311 ~~~l~~h~~~v~~~~~~~~~~ 331 (362)
+-+-..|.-+|++++|.|+..
T Consensus 220 Lf~S~~~ey~ITSva~npd~~ 240 (737)
T KOG1524|consen 220 LFTSAAEEYAITSVAFNPEKD 240 (737)
T ss_pred cccCChhccceeeeeeccccc
Confidence 444567999999999998843
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-11 Score=119.00 Aligned_cols=258 Identities=14% Similarity=0.214 Sum_probs=153.0
Q ss_pred cceeEEEEEcC---ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 68 KGAVKSLVVLA---DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 68 ~~~v~~i~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
...+..++.+. ..+++|+.||+|++|+...-...... ....+++.....+
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s---------------------------~rS~ltys~~~sr 1100 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS---------------------------ARSELTYSPEGSR 1100 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce---------------------------eeeeEEEeccCCc
Confidence 34455555543 35899999999999998643211000 0111223334567
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCce-------EEEeeeccCcccEEEE-EEcCC-C--cEEEEeCCCeEEEEeC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFK-------CLESITNAHDDAINAV-ALSDD-G--DVYTGSADKKIKVWRR 213 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~~h~~~v~~v-~~~~~-~--~~~s~~~dg~i~iw~~ 213 (362)
+.++...+++..+|.++.||.|++.+++..+ +.+.......+.+.++ ++... + .++.+...+.|..||.
T Consensus 1101 ~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1101 VEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred eEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 8899999999999999999999999987521 1222222233344444 34321 2 3566777889999998
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---C--Ce
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---S--DL 288 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~--~~ 288 (362)
.......++ ......+.|++++++|-+.++++|...|.+.+||++-... ..-.... +...+..+... + ..
T Consensus 1181 r~~~~~w~l--k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~--i~sw~~P-~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1181 RMRHDAWRL--KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP--ILSWEHP-ARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred hhhhhHHhh--hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce--eecccCc-ccCCcceEEeeccCCCCce
Confidence 765433222 2233457899999999999999999999999999985321 1111122 23445444432 2 23
Q ss_pred -EEEee-CCCcEEEeeCCCCceeeeeEecC--------CCCcEEEEEeeec---CCccCCCCCceEEEecCCCCcEEEEe
Q 044557 289 -VCSGS-ADKTIRIWRGIDRNYTCLAVLEG--------HRGPVKCLAAAID---NDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 289 -~~s~s-~D~~i~~W~~~~~~~~~~~~l~~--------h~~~v~~~~~~~~---~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+.+++ ..+.|.+|++.... +-.++-. |..+.. .+-.|. +..|.....+.++.+|+.|..||.||
T Consensus 1256 ~vs~~~~~~nevs~wn~~~g~--~~~vl~~s~~~p~ls~~~Ps~-~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGL--RQTVLWASDGAPILSYALPSN-DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred EEEecccCCCceeeeecccCc--ceEEEEcCCCCcchhhhcccc-cCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 44444 67889999865422 2222211 111111 000010 00122233445788999999999999
Q ss_pred cccCc
Q 044557 356 ISFPL 360 (362)
Q Consensus 356 ~~~~~ 360 (362)
..+|-
T Consensus 1333 ~~~p~ 1337 (1431)
T KOG1240|consen 1333 PTRPE 1337 (1431)
T ss_pred CCCcc
Confidence 98874
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.6e-13 Score=116.83 Aligned_cols=223 Identities=19% Similarity=0.310 Sum_probs=144.3
Q ss_pred eeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---c-eeEEEe
Q 044557 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---D-KLFSAH 85 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~-~l~s~~ 85 (362)
-+.|.||++-|.+|.|. |.+|++||.|-.+.|||.... ++. ..+...|.+.|.++.+.+ + .+++|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--Kll------hsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--KLL------HSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc--cee------eeeecccccceeEEeeeccCCCeEEEecc
Confidence 34688999999999994 899999999999999996421 111 122234567777877653 3 488999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCC
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDR 164 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~ 164 (362)
.|..|+++|+......... .+. ......+.-|.++|--++..|++ ..+.++++||
T Consensus 115 gDk~i~lfdl~~~~~~~~d---------~~~---------------~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMD---------HGM---------------EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred CcceEEEEecccccccccc---------cCc---------------cchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence 9999999999753211000 000 00011234578888888888988 7899999999
Q ss_pred cEEEEECCCceE-EE------eeeccC--cccEEEEEEcCCCc--EEEEeCCCeEEEEeCCC--------CCCcce----
Q 044557 165 TIKIWRTSDFKC-LE------SITNAH--DDAINAVALSDDGD--VYTGSADKKIKVWRRSP--------GNKKHS---- 221 (362)
Q Consensus 165 ~i~iwd~~~~~~-~~------~~~~~h--~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~--------~~~~~~---- 221 (362)
+|+-+|++.... -. .+..-+ --...++.++|... |+.|+.|-..++||..- +.....
T Consensus 171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~ 250 (758)
T KOG1310|consen 171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKD 250 (758)
T ss_pred ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcc
Confidence 999999987431 11 111111 12457888998764 78899999999999321 110000
Q ss_pred --eeh-hhhcc--------c---cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcE
Q 044557 222 --LVD-VLERH--------N---SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI 266 (362)
Q Consensus 222 --~~~-~~~~h--------~---~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~ 266 (362)
+.. ...+| . ..++-+.|+|+|.-|+..=.--.|+++|+...+...
T Consensus 251 ~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 251 CRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred cchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 000 00111 1 124667899999877766555679999987655443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-14 Score=128.87 Aligned_cols=192 Identities=26% Similarity=0.376 Sum_probs=140.0
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
.+|...|.|+.|...|.++++|+.|..++||.+++..++.... +|++.|+.++.+.++. +++++.|..|++|.+.++.
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence 4788999999999999999999999999999999999988774 8999999999988775 7889999999999998775
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEEe--CCeEEEeeC
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAVV--SDLVCSGSA 294 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~~--~~~~~s~s~ 294 (362)
.+..+.+|.+.|++|+|+|-. +.+.||++++||.+-. .....-..++... ..+-++-+. .+-++|++.
T Consensus 266 ----pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 266 ----PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred ----hHHHHhccccceeeeccCccc----cCCCCCceEecccccc-ccccCCCCCCcccccceeeeeccccccccccccC
Confidence 456788999999999999954 7889999999998721 1001101111112 233344443 346899999
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|+.-+.|.... +..|...+.-+.++. +...+.+++-.|..+.+|++
T Consensus 337 d~ea~n~e~~~--------l~~~~~~lif~t~ss--------d~~~~~~~ar~~~~~~vwnl 382 (1113)
T KOG0644|consen 337 DGEARNHEFEQ--------LAWRSNLLIFVTRSS--------DLSSIVVTARNDHRLCVWNL 382 (1113)
T ss_pred CcccccchhhH--------hhhhccceEEEeccc--------cccccceeeeeeeEeeeeec
Confidence 99999996421 233433332222211 12235566667778888887
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=118.21 Aligned_cols=197 Identities=20% Similarity=0.314 Sum_probs=147.4
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
-|..++|.|||..|+.+. +..+.+||.+++..++++. +|.+.|.+++|+.+|+ +++|+.|+.|.+|...-.. .+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---IL 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEecccccc---ee
Confidence 578899999999877665 5788999999999999885 8999999999999997 8899999999999643211 11
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEE
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRI 300 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~ 300 (362)
-..|...|.|+.|.|-.+.|++++.. ..-+|+.+... . ... ....++.+.+|..+ +++-|-.||+|.+
T Consensus 89 ---kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~--V---~K~-kss~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 89 ---KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS--V---SKH-KSSSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred ---eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh--H---Hhh-hhheeEEEeeecCCCcEEEEeccCceEEe
Confidence 12589999999999999999999864 34578765321 1 011 12345677788644 8999999999998
Q ss_pred eeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
=+........+..--|-.++|++++|+|... .+...+++...+..++-++.++..
T Consensus 159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg----~G~~di~aV~DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSG----EGRNDILAVADWGQTLSFYQLSGK 213 (1081)
T ss_pred ecCCCCcceEEeCCCCCCCCceEEEecCCCC----CCccceEEEEeccceeEEEEecce
Confidence 7643322222333446788999999998754 233357888999999999888654
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-11 Score=104.55 Aligned_cols=267 Identities=16% Similarity=0.236 Sum_probs=169.2
Q ss_pred ccceeeeEec----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEe
Q 044557 19 NSYVSSLALA----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWK 94 (362)
Q Consensus 19 ~~~V~~l~~~----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~ 94 (362)
...|.++.|. .+.++.++.|..+....++... ..... .+......+.+++..+......|++|-.+|.+++|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~--~~s~~-~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFE--ISSSL-DDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCc--ccccc-ccccccccccccccchhhcCCEEEEEecCCcEEEEe
Confidence 3455566662 2355656566666666554221 11000 011123345566777777778899999999999999
Q ss_pred cCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECC--CcEEEEEC
Q 044557 95 INNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWD--RTIKIWRT 171 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d--~~i~iwd~ 171 (362)
.+.+.....+...+... ..+..+.-++.. .++++|+.. ..++|||+
T Consensus 132 ~k~~d~hss~l~~la~g-------------------------------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-------------------------------PGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred ccCCccccccceeeecC-------------------------------CceeeeccCCCCCceEecCchhcccceeeeec
Confidence 87554322222222111 122233333333 456669988 89999999
Q ss_pred CCceEEEeeecc------Ccc--cEEEEEEcCC---CcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 172 SDFKCLESITNA------HDD--AINAVALSDD---GDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 172 ~~~~~~~~~~~~------h~~--~v~~v~~~~~---~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
+..+.+-.-... -.- .++++.|-++ .+|++++.-+.|++||...+... ...+.--..+++++...|
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP---V~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP---VAQFDFLENPISSTGLTP 257 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc---eeEeccccCcceeeeecC
Confidence 877544321111 112 3456778655 35999999999999998866432 223333467899999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
.+++|++|..-+.+..||.+... .....+++-++.|+++...+. ++++++-|+.+||+|...+ ++++... -+
T Consensus 258 ~gn~Iy~gn~~g~l~~FD~r~~k---l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr--kll~kvY-vK 331 (412)
T KOG3881|consen 258 SGNFIYTGNTKGQLAKFDLRGGK---LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR--KLLHKVY-VK 331 (412)
T ss_pred CCcEEEEecccchhheecccCce---eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc--hhhhhhh-hh
Confidence 99999999999999999997532 233347888899999988766 9999999999999996442 2232211 13
Q ss_pred CcEEEEEeee
Q 044557 319 GPVKCLAAAI 328 (362)
Q Consensus 319 ~~v~~~~~~~ 328 (362)
+..+++.+.+
T Consensus 332 s~lt~il~~~ 341 (412)
T KOG3881|consen 332 SRLTFILLRD 341 (412)
T ss_pred ccccEEEecC
Confidence 3455555543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-11 Score=102.92 Aligned_cols=247 Identities=17% Similarity=0.283 Sum_probs=158.2
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~ 85 (362)
-+++.++||.+.|++.... ..-+++.+.|.++|||--.... ++.+. +-..-..+++++.... .+|+.+-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~-----q~wps--I~~~mP~~~~~~~y~~e~~~L~vg~ 87 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG-----QYWPS--IYHYMPSPCSAMEYVSESRRLYVGQ 87 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccc-----ccCch--hhhhCCCCceEeeeeccceEEEEEE
Confidence 3677889999999988774 4569999999999999532211 11110 0001122444554433 2477777
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
..|++.-+.+...- .++.. ...+..|..++..+-|+.....+++.+.|..
T Consensus 88 ~ngtvtefs~sedf------nkm~~------------------------~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~ 137 (404)
T KOG1409|consen 88 DNGTVTEFALSEDF------NKMTF------------------------LKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ 137 (404)
T ss_pred ecceEEEEEhhhhh------hhcch------------------------hhhhhhhhcceeeEEecCCceeEEEeccccc
Confidence 77887777553210 00000 0112358888999999888889999999988
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCC---cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDG---DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
+.--=.+.+..+.... ..+.+..++- ..+.|...|.|.+-.+.... ..++..+.+|..++.+++|.|..
T Consensus 138 ~~~hc~e~~~~lg~Y~------~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~--~~~i~~~~~h~~~~~~l~Wd~~~ 209 (404)
T KOG1409|consen 138 FAWHCTESGNRLGGYN------FETPASALQFDALYAFVGDHSGQITMLKLEQNG--CQLITTFNGHTGEVTCLKWDPGQ 209 (404)
T ss_pred eEEEeeccCCcccceE------eeccCCCCceeeEEEEecccccceEEEEEeecC--CceEEEEcCcccceEEEEEcCCC
Confidence 7544444443332211 0001101110 12345555666655544332 23456678899999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCC
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~ 304 (362)
..|++|..|..+.+||+....+ ....+.+|.+.|..+.+.+ ..+.++++||.|-+|+..
T Consensus 210 ~~LfSg~~d~~vi~wdigg~~g---~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 210 RLLFSGASDHSVIMWDIGGRKG---TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred cEEEeccccCceEEEeccCCcc---eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 9999999999999999975433 3445778999998887753 479999999999999853
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-11 Score=103.68 Aligned_cols=210 Identities=12% Similarity=0.216 Sum_probs=142.5
Q ss_pred cccCccceeeeEecCcEEEEecCCCeEEEeecCCCC--cccceeeeccceeEEeecceeEEE---EEcCceeEEEecC--
Q 044557 15 LKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFS--SELDQEFLSNNNIVAVGKGAVKSL---VVLADKLFSAHQD-- 87 (362)
Q Consensus 15 l~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~i---~~~~~~l~s~~~d-- 87 (362)
..+-.++|..+......|++|-.+|.+++|..+... ......+. .+ ..+..+ .-.+..+++|+..
T Consensus 101 ~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-------~g-~g~~~~r~~~~~p~Iva~GGke~~ 172 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-------TG-PGLYDVRQTDTDPYIVATGGKENI 172 (412)
T ss_pred cccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeee-------cC-CceeeeccCCCCCceEecCchhcc
Confidence 344566677777666789999999999999977432 11111111 11 111111 1123346678888
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC--CCEEEEEECCCc
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD--ETLLYSVSWDRT 165 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~ 165 (362)
..+++||++...+ .+.. ..+| +....+ . -.-.++.+.|-+. ...||+++.-+.
T Consensus 173 n~lkiwdle~~~q---iw~a-KNvp------------nD~L~L---r------VPvW~tdi~Fl~g~~~~~fat~T~~hq 227 (412)
T KOG3881|consen 173 NELKIWDLEQSKQ---IWSA-KNVP------------NDRLGL---R------VPVWITDIRFLEGSPNYKFATITRYHQ 227 (412)
T ss_pred cceeeeeccccee---eeec-cCCC------------Cccccc---e------eeeeeccceecCCCCCceEEEEeccee
Confidence 8899999976431 1110 0010 000000 0 1123567778776 778999999999
Q ss_pred EEEEECCCce-EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 166 IKIWRTSDFK-CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 166 i~iwd~~~~~-~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
||+||.+.++ ++..+. --+.++.++...|++. +++|..-|.+..||...+.. +...+++-.+.|++|..+|+..
T Consensus 228 vR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl---~g~~~kg~tGsirsih~hp~~~ 303 (412)
T KOG3881|consen 228 VRLYDTRHQRRPVAQFD-FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL---LGCGLKGITGSIRSIHCHPTHP 303 (412)
T ss_pred EEEecCcccCcceeEec-cccCcceeeeecCCCcEEEEecccchhheecccCcee---eccccCCccCCcceEEEcCCCc
Confidence 9999998654 455554 3466899999999997 78999999999999987642 2223566788999999999999
Q ss_pred EEEEEcCCCcEEEEeccC
Q 044557 244 VLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~ 261 (362)
+|+++|.|+.+|++|.++
T Consensus 304 ~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 304 VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eEEeeccceeEEEeeccc
Confidence 999999999999999986
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.1e-13 Score=115.04 Aligned_cols=189 Identities=15% Similarity=0.213 Sum_probs=148.8
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
..+.++.+|++|+.|+..|.|..+|..+.+....+. -...|.++.|..+.++++....+.+.|||-.. . -+.+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G-t----ElHC 205 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNG-T----ELHC 205 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhhhceEEEecCCC-c----EEee
Confidence 467889999999999999999999999998777664 34578899998888888888999999998542 2 2344
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeC
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRG 303 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~ 303 (362)
++. ..+|..+.|-|---+|++++..|.++.-|+..+. ++..+..-.+.+..|...| -.+-+|...|+|-+|+-
T Consensus 206 lk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk----lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 206 LKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK----LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred hhh-cCchhhhcccchhheeeecccCCceEEEeechhh----hhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 444 3578999999988889999999999999987643 3344444455555555554 37889999999999984
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.. -.++..+..|.++|.++|+.+ +|+|+||+|.|..++|||+.
T Consensus 281 ~s--kePLvKiLcH~g~V~siAv~~---------~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 281 NS--KEPLVKILCHRGPVSSIAVDR---------GGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred CC--cchHHHHHhcCCCcceEEECC---------CCcEEeecccccceeEeeec
Confidence 33 344666778999999999964 45789999999999999995
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-11 Score=102.59 Aligned_cols=208 Identities=22% Similarity=0.321 Sum_probs=153.5
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEEC-CCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRT-SDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~-~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
+|.+.+.....-|-..-+++.+.|.++|||-- +.++-...+......+++++.+.++.+ |+.|-.+|++.-+.+...-
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 56777777777777777999999999999953 334444444444456788888888876 7788889999999876554
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC----------------------------------
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD---------------------------------- 263 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~---------------------------------- 263 (362)
++.........|..+|..+.|+.....+++.+.|..+.---.+.+.
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr 181 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLK 181 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEE
Confidence 4444555666799999999999888999999988876322111100
Q ss_pred ---CcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCC
Q 044557 264 ---GNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDT 338 (362)
Q Consensus 264 ---~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~ 338 (362)
.....+..+.+|.+.+.+++|.+. .+.+|+.|..|.+||+..+++ ....+.||...|..+...+ .
T Consensus 182 ~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~---------~ 251 (404)
T KOG1409|consen 182 LEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQ---------H 251 (404)
T ss_pred EeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc-eeeeeccchhhhhhhhhhh---------h
Confidence 011234457789999999999754 899999999999999765544 3557889999998775432 2
Q ss_pred ceEEEecCCCCcEEEEecc
Q 044557 339 SYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 339 ~~~l~s~s~D~~i~~W~~~ 357 (362)
.+.|.|++.||.|-+||+.
T Consensus 252 t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred heeeeeccCCCeEEEEecc
Confidence 3458899999999999985
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=107.08 Aligned_cols=251 Identities=17% Similarity=0.192 Sum_probs=165.0
Q ss_pred EEeecceeEEEEEc--CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 64 VAVGKGAVKSLVVL--ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 64 ~~~~~~~v~~i~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
+..|.+.|..+.++ ++.|++++.|..|.+||+..+.+.... ..+|
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f---------------------------------~SGH 184 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF---------------------------------ESGH 184 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc---------------------------------cccc
Confidence 34567778888776 456999999999999998765432100 0134
Q ss_pred cCceeEEEEec--CCCEEEEEECCCcEEEEECCC-ceEE-EeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCC
Q 044557 142 VDAVSALALTK--DETLLYSVSWDRTIKIWRTSD-FKCL-ESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 142 ~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~-~~~~-~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~ 215 (362)
...|.-..|-| +.+-+++++.||.+++=.+.. +.+. ......|.++|.-++.-|+.. |++++.|+.|.-+|+..
T Consensus 185 ~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~ 264 (559)
T KOG1334|consen 185 CNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ 264 (559)
T ss_pred ccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeecc
Confidence 44444445544 346789999999999876543 3232 122346899999999988763 99999999999999987
Q ss_pred CCCcceeehhhhcccc---ceeEEEEecCCC-EEEEEcCCCcEEEEeccCCCCcE--EEEEee-c-----CccceeEEEE
Q 044557 216 GNKKHSLVDVLERHNS---GINALALSCDGS-VLYSGACDRSIIVWEKEEDDGNI--LVVGAL-R-----GHTKSILCMA 283 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~---~v~~i~~s~~~~-~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~-~-----~h~~~v~~~~ 283 (362)
......+. +...+.. ....|+..|-+. .+++|+.|-.+|+||.+.-.... ..+..+ + .....|+|+.
T Consensus 265 ~~pa~~~~-cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~ 343 (559)
T KOG1334|consen 265 DVPAEKFV-CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV 343 (559)
T ss_pred CCccceee-eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE
Confidence 76544333 2222333 457788888554 89999999999999976432210 001111 1 1223588999
Q ss_pred EeC--CeEEEeeCCCcEEEeeCCCCce----------eeeeE-ecCCCCc--EEEEEeeecCCccCCCCCceEEEecCCC
Q 044557 284 VVS--DLVCSGSADKTIRIWRGIDRNY----------TCLAV-LEGHRGP--VKCLAAAIDNDRCDSSDTSYLVCSGSLD 348 (362)
Q Consensus 284 ~~~--~~~~s~s~D~~i~~W~~~~~~~----------~~~~~-l~~h~~~--v~~~~~~~~~~~~~~~~~~~~l~s~s~D 348 (362)
|+. .-+.++-.|-.|.++.-....+ ..++. ++||.+. |.++-| +.|...|++|||+=
T Consensus 344 Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF--------fGPrsEyVvSGSDC 415 (559)
T KOG1334|consen 344 YSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF--------FGPRSEYVVSGSDC 415 (559)
T ss_pred ecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeee--------ccCccceEEecCcc
Confidence 972 2455556677788885221111 23343 8899764 554433 45667899999999
Q ss_pred CcEEEEec
Q 044557 349 CDIKVWQI 356 (362)
Q Consensus 349 ~~i~~W~~ 356 (362)
|.|-||+-
T Consensus 416 GhIFiW~K 423 (559)
T KOG1334|consen 416 GHIFIWDK 423 (559)
T ss_pred ceEEEEec
Confidence 99999985
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-11 Score=109.15 Aligned_cols=220 Identities=13% Similarity=0.093 Sum_probs=132.2
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCC---CeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSD---NEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~D---g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
..+.|..|...+.+..|+ |++|+.++.+ ..|++||+.+........ ..+....+.+++| .|+.
T Consensus 195 ~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~----------~~g~~~~~~wSPDG~~La~ 264 (429)
T PRK01742 195 NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS----------FRGHNGAPAFSPDGSRLAF 264 (429)
T ss_pred CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec----------CCCccCceeECCCCCEEEE
Confidence 345677788889999985 7788877654 479999986533111111 1122334556654 4555
Q ss_pred E-ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-
Q 044557 84 A-HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS- 161 (362)
Q Consensus 84 ~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s- 161 (362)
+ +.+|.+.+|.++..... ... +..+...+....|+||++.|+.++
T Consensus 265 ~~~~~g~~~Iy~~d~~~~~---~~~------------------------------lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 265 ASSKDGVLNIYVMGANGGT---PSQ------------------------------LTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred EEecCCcEEEEEEECCCCC---eEe------------------------------eccCCCCcCCEEECCCCCEEEEEEC
Confidence 4 46887777754321100 000 011233456788999999776555
Q ss_pred CCCcEEEEECCCc-eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 162 WDRTIKIWRTSDF-KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 162 ~d~~i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
.++...||++... .....+ .+.. ....|+|+|+ ++..+.++ +.+||+.++... .+.. .+ ....+.|+
T Consensus 312 ~~g~~~I~~~~~~~~~~~~l--~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-~lt~---~~--~~~~~~~s 380 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASLV--GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-VLSS---TF--LDESPSIS 380 (429)
T ss_pred CCCCceEEEEECCCCCeEEe--cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-EecC---CC--CCCCceEC
Confidence 5788888876432 112222 2332 3567999997 55555555 555898776432 1111 11 23457899
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS 286 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 286 (362)
|||++|+.++.++.+.+|.+....+. ....+.+|.+.+...+|++
T Consensus 381 PdG~~i~~~s~~g~~~~l~~~~~~G~--~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 381 PNGIMIIYSSTQGLGKVLQLVSADGR--FKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCC--ceEEccCCCCCCCCcccCC
Confidence 99999999999999988876432222 2334566777677666665
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.3e-11 Score=96.08 Aligned_cols=145 Identities=19% Similarity=0.284 Sum_probs=94.5
Q ss_pred EEEEecCCCEEEEEEC---C-------CcEEEEECCCc-eEEEeeeccCcccEEEEEEcCCCc-EE--EEeCCCeEEEEe
Q 044557 147 ALALTKDETLLYSVSW---D-------RTIKIWRTSDF-KCLESITNAHDDAINAVALSDDGD-VY--TGSADKKIKVWR 212 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~---d-------~~i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~~-~~--s~~~dg~i~iw~ 212 (362)
.+.|+|+|.+|+.-.. | +...+|.++.. .....+.....++|.+++|+|+|. ++ .|..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4567777776554332 1 23555555322 233344334456799999999986 44 345678999999
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC---CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD---RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-- 287 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-- 287 (362)
++ .... ..+ +...++.|.|+|+|++|++|+.+ |.|.+||.++.+ .+.... |. .+..++|+|+
T Consensus 90 ~~-~~~i----~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~----~i~~~~-~~-~~t~~~WsPdGr 156 (194)
T PF08662_consen 90 VK-GKKI----FSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK----KISTFE-HS-DATDVEWSPDGR 156 (194)
T ss_pred Cc-ccEe----Eee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE----Eeeccc-cC-cEEEEEEcCCCC
Confidence 86 2222 122 35677899999999999998754 569999997422 233322 33 4678888765
Q ss_pred eEEEee------CCCcEEEeeCC
Q 044557 288 LVCSGS------ADKTIRIWRGI 304 (362)
Q Consensus 288 ~~~s~s------~D~~i~~W~~~ 304 (362)
++++++ .|..++||+..
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEEeccceeccccEEEEEec
Confidence 777665 38999999864
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-12 Score=110.58 Aligned_cols=272 Identities=17% Similarity=0.227 Sum_probs=174.2
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC-ceeEEEecCCcEEEEecCCCCCCcccce
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-DKLFSAHQDHKIRVWKINNQEPDHQKYT 106 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 106 (362)
+|.+++-|+.-|.+-.+|..+.. +..++. -...|..+.+.. +.++...+...+.+||-..-+
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t~~--L~~Ei~--------v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE------- 202 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVTKK--LHFEIN--------VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE------- 202 (545)
T ss_pred CccEEEecCCccceeeeecccce--eeeeee--------hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE-------
Confidence 47888999999999888865532 111110 012333333332 335666777788888754321
Q ss_pred eeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcc
Q 044557 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD 186 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~ 186 (362)
+.++. ....|.-+.|-|.=-+|++++..|.++.-|+..++.+..+.. -.+
T Consensus 203 -lHClk----------------------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G 252 (545)
T KOG1272|consen 203 -LHCLK----------------------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAG 252 (545)
T ss_pred -Eeehh----------------------------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCC
Confidence 11111 123456677778777899999999999999999998876653 345
Q ss_pred cEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCc
Q 044557 187 AINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGN 265 (362)
Q Consensus 187 ~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~ 265 (362)
.+..++-+|-+. +-+|...|+|.+|.....++ +..+-.|.++|.+|++.++|.|++|.|.|..+++||++....
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP----LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q- 327 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP----LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ- 327 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCCCcch----HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc-
Confidence 677788888776 55899999999998765443 334456999999999999999999999999999999986431
Q ss_pred EEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCC-ceeeeeEecCC--CCcEEEEEeeecCCccC-CC--CCc
Q 044557 266 ILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDR-NYTCLAVLEGH--RGPVKCLAAAIDNDRCD-SS--DTS 339 (362)
Q Consensus 266 ~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~-~~~~~~~l~~h--~~~v~~~~~~~~~~~~~-~~--~~~ 339 (362)
+.+... .-....++++...++..|....|.+|.-... ...+-.-+..| ...|.++.|.|-.+..- .. +-.
T Consensus 328 ---l~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~t 403 (545)
T KOG1272|consen 328 ---LHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGIT 403 (545)
T ss_pred ---cceeec-CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCce
Confidence 111111 1234567777766666677678999962111 11111111112 23788888887654211 01 112
Q ss_pred eEEEecCCCCcEEEEe
Q 044557 340 YLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 340 ~~l~s~s~D~~i~~W~ 355 (362)
.+|+-|+.|=..--|.
T Consensus 404 silVPGsGePN~Ds~e 419 (545)
T KOG1272|consen 404 SILVPGSGEPNYDSLE 419 (545)
T ss_pred eEeccCCCCCCcchhc
Confidence 4677787765544443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.6e-11 Score=111.88 Aligned_cols=188 Identities=19% Similarity=0.251 Sum_probs=135.6
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
..+.++.+..+..+-+||...... ..+...+..+.... . .-+....+ ++++|+.-+.|-+|+.......
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~--~~~i~~~er~~l~~-~--~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p---- 168 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSV--LSKIQSDERCTLYS-S--LIIGDSAEELYIASGSVFGEIIVWKPHEDNKP---- 168 (967)
T ss_pred hcceEEEEEcCceEEEEecccCce--ehhcCCCceEEEEe-E--EEEeccCcEEEEEeccccccEEEEeccccCCc----
Confidence 456788888889999998653211 11111111111100 0 00111223 4777888899999987622110
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCc
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~ 185 (362)
....+|.+.+..+.++.||++++++|+|+++|+|++++.+......-+|+
T Consensus 169 ------------------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 169 ------------------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred ------------------------------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 01247999999999999999999999999999999999887664445899
Q ss_pred ccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccc-cceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 186 DAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHN-SGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 186 ~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~-~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
..|+.++|.|. ++++++.|-+.++|+.... ...++.+|. ..+..++++++...++|++.|+.+++|++.
T Consensus 219 aRvw~~~~~~n-~i~t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 219 ARVWACCFLPN-RIITVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ceeEEEEeccc-eeEEeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 99999999998 8999999999999965432 222556665 468999999999999999999999999864
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-11 Score=107.42 Aligned_cols=200 Identities=14% Similarity=0.239 Sum_probs=137.7
Q ss_pred cCCCEEEEEECCCcEEEEECCCceEEEee---eccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCC----cc--
Q 044557 152 KDETLLYSVSWDRTIKIWRTSDFKCLESI---TNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNK----KH-- 220 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~----~~-- 220 (362)
|.+--|..|-.-|.|.+.|....+..+.+ .......|+++.|-|.+. ++.+-.+|.+.+||...... ..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 44545666777788888876543221111 112346799999987653 77788899999997532110 00
Q ss_pred -------ee---eh--------hhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE
Q 044557 221 -------SL---VD--------VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM 282 (362)
Q Consensus 221 -------~~---~~--------~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~ 282 (362)
.+ .. ...--...|+.++|+|||++||+-|.||.+|+||..+.+ ++..++.--+..+|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e----Llg~mkSYFGGLLCv 338 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE----LLGVMKSYFGGLLCV 338 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH----HHHHHHhhccceEEE
Confidence 00 00 001113467889999999999999999999999987532 334444445678999
Q ss_pred EEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc--------------------------cC
Q 044557 283 AVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR--------------------------CD 334 (362)
Q Consensus 283 ~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~--------------------------~~ 334 (362)
+|++| +|++|++|.-|.+|...+ .+.++.-+||+++|..++|.|--.. ..
T Consensus 339 cWSPDGKyIvtGGEDDLVtVwSf~e--rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~ 416 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGEDDLVTVWSFEE--RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGT 416 (636)
T ss_pred EEcCCccEEEecCCcceEEEEEecc--ceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCC
Confidence 99876 999999999999999755 3568888999999999999831000 00
Q ss_pred C-------------CCCceEEEecCCCCcEEEEecc
Q 044557 335 S-------------SDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 335 ~-------------~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+ +...+-+.|.+.|..+-|||+.
T Consensus 417 ~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt 452 (636)
T KOG2394|consen 417 GSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT 452 (636)
T ss_pred CCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence 0 0134678999999999999984
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-09 Score=88.84 Aligned_cols=177 Identities=20% Similarity=0.305 Sum_probs=120.7
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
+.|.|||-...+++.++. ...+|.+|.+.++. +..-..+.|.||...+.-.....+.+.. .+.+..+++-..+..
T Consensus 75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~r~r--iVvvl~~~I~VytF~~n~k~l~~~et~~-NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS--FNSEIKAVKLRRDR--IVVVLENKIYVYTFPDNPKLLHVIETRS-NPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEE--eccceeeEEEcCCe--EEEEecCeEEEEEcCCChhheeeeeccc-CCCceEeecCCCCce
Confidence 579999966666776664 57899999999764 2333567899998864322222222221 233344333333444
Q ss_pred EEEEE-cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCc-EEEeeCCCCceeeeeEecC--C
Q 044557 244 VLYSG-ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKT-IRIWRGIDRNYTCLAVLEG--H 317 (362)
Q Consensus 244 ~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~-i~~W~~~~~~~~~~~~l~~--h 317 (362)
+|+-- -.-|.|.+-|+...... ....+.+|...|.|++.. +.++||+|..|+ ||||+.. .+..++.+.. -
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~--~g~~l~E~RRG~d 225 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE--DGTLLQELRRGVD 225 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC--CCcEeeeeecCCc
Confidence 55533 35689999998764431 112356899999999986 559999999999 8999953 4556666652 2
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...|.+++|+|+. .+||.+|+-||+.|+.+.-
T Consensus 226 ~A~iy~iaFSp~~---------s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 226 RADIYCIAFSPNS---------SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred hheEEEEEeCCCc---------cEEEEEcCCCeEEEEEeec
Confidence 4479999998764 4799999999999999853
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=95.57 Aligned_cols=109 Identities=17% Similarity=0.302 Sum_probs=81.2
Q ss_pred cCceeEEEEecCCCEEEEE--ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe---CCCeEEEEeCCC
Q 044557 142 VDAVSALALTKDETLLYSV--SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS---ADKKIKVWRRSP 215 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~---~dg~i~iw~~~~ 215 (362)
.++|.+++|+|+++.||+. ..++.|.+||++ .+.+..+ +...++.+.|+|+|+ ++.++ ..|.|.+||..+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 3569999999999987655 356799999997 4444444 346778999999998 55554 357899999985
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcC------CCcEEEEecc
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC------DRSIIVWEKE 260 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~------d~~i~~wd~~ 260 (362)
.+. +... .| ..++.++|+|||++++++.. |+.+++|+..
T Consensus 135 ~~~----i~~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 135 KKK----ISTF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CEE----eecc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 432 2222 23 34789999999999998875 7888999875
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-09 Score=89.34 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=106.5
Q ss_pred cceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeE
Q 044557 68 KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSA 147 (362)
Q Consensus 68 ~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 147 (362)
..+|.++.+..++++..- .+.|.+|....... ....+.+.+. | ...-+
T Consensus 94 ~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k---~l~~~et~~N----------P------------------kGlC~ 141 (346)
T KOG2111|consen 94 NSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPK---LLHVIETRSN----------P------------------KGLCS 141 (346)
T ss_pred ccceeeEEEcCCeEEEEe-cCeEEEEEcCCChh---heeeeecccC----------C------------------CceEe
Confidence 457888888888877665 56899998753210 0000100000 0 01111
Q ss_pred EEEecCCCEEEEE-ECCCcEEEEECCCceE-EEeeeccCcccEEEEEEcCCCc-EEEEeCCCe-EEEEeCCCCCCcceee
Q 044557 148 LALTKDETLLYSV-SWDRTIKIWRTSDFKC-LESITNAHDDAINAVALSDDGD-VYTGSADKK-IKVWRRSPGNKKHSLV 223 (362)
Q Consensus 148 ~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~-~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~-i~iw~~~~~~~~~~~~ 223 (362)
+.-+.+..+||-- -.-|.|+|-|+...+. ...+..+|...|.|++++.+|. ++|++..|+ |||||..++...+.+-
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R 221 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR 221 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee
Confidence 1112222333332 2348899999876554 2234468999999999999997 788999986 8999999987554431
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCC
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEED 262 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~ 262 (362)
. ..-...|.+|+|||+..+|+++|..|++.++.++..
T Consensus 222 R--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 222 R--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred c--CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 1 113467999999999999999999999999998753
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-09 Score=96.35 Aligned_cols=273 Identities=15% Similarity=0.260 Sum_probs=162.2
Q ss_pred cCccceeeeEe--cCcE-EEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eEEEecCCcEE
Q 044557 17 GHNSYVSSLAL--AGKF-LYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LFSAHQDHKIR 91 (362)
Q Consensus 17 gH~~~V~~l~~--~~~~-l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~s~~~dg~i~ 91 (362)
+|....+.|.. +|+| +|||-.--.|++||+.......... .....|.-..++.|. ++.-..|++|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh---------lDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH---------LDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec---------ccccceeEEEeccchhhheEeecCceee
Confidence 46677777777 4787 5778888999999987644222111 112233333333332 44445566665
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
+...-... . ..+ +| ..-..++++.-..-|+.++....|.-.++
T Consensus 120 fHak~G~h---y-~~R---IP------------------------------~~GRDm~y~~~scDly~~gsg~evYRlNL 162 (703)
T KOG2321|consen 120 FHAKYGRH---Y-RTR---IP------------------------------KFGRDMKYHKPSCDLYLVGSGSEVYRLNL 162 (703)
T ss_pred ehhhcCee---e-eee---cC------------------------------cCCccccccCCCccEEEeecCcceEEEEc
Confidence 54221000 0 000 00 00123444433333455555667878899
Q ss_pred CCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee--hhhhcccc-----ceeEEEEecCCC
Q 044557 172 SDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV--DVLERHNS-----GINALALSCDGS 243 (362)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~--~~~~~h~~-----~v~~i~~s~~~~ 243 (362)
+.++.+..+. ...+.+++|.+++-.. +++|+.||.|..||..+.....++. .....|.. .|+++.|+.+|-
T Consensus 163 EqGrfL~P~~-~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL 241 (703)
T KOG2321|consen 163 EQGRFLNPFE-TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL 241 (703)
T ss_pred cccccccccc-cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce
Confidence 9998887765 3457899999998765 5667779999999987654322221 11122333 399999999999
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc--ceeEEEEEeC----CeEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHT--KSILCMAVVS----DLVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~--~~v~~~~~~~----~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
.+++|..+|.|.+||++...+- .+ +.|. -+|..+.|.+ +.++|.. ...+|||+.. .++....++.-
T Consensus 242 ~~aVGts~G~v~iyDLRa~~pl--~~---kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~--~Gk~~asiEpt 313 (703)
T KOG2321|consen 242 HVAVGTSTGSVLIYDLRASKPL--LV---KDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDEC--TGKPMASIEPT 313 (703)
T ss_pred eEEeeccCCcEEEEEcccCCce--ee---cccCCccceeeecccccCCCceEEecc-hHHhhhcccc--cCCceeecccc
Confidence 9999999999999999975432 22 3344 4566777742 2444433 3678999843 34445555543
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
.+ ++.+.+.|+ +| ++.+|=.++.+..+
T Consensus 314 ~~-lND~C~~p~--------sG-m~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 314 SD-LNDFCFVPG--------SG-MFFTANESSKMHTY 340 (703)
T ss_pred CC-cCceeeecC--------Cc-eEEEecCCCcceeE
Confidence 33 777766654 33 34456555555444
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.1e-10 Score=100.24 Aligned_cols=195 Identities=14% Similarity=0.249 Sum_probs=142.2
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceEEEeeecc-C-cccEEEEEE------cC-------------CCc--EEEEeCCCe
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKCLESITNA-H-DDAINAVAL------SD-------------DGD--VYTGSADKK 207 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-h-~~~v~~v~~------~~-------------~~~--~~s~~~dg~ 207 (362)
+|...++|....||.+|||+....+....+... + ++...+..| +| .+. ++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 345678999999999999999988766555321 1 111222222 22 122 556888999
Q ss_pred EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC
Q 044557 208 IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 208 i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (362)
|.+|++..++...++. -..|.++|+++.++.+-..|.+++.|+.+.+|+..+. ..+..+++-...+.++.++++
T Consensus 82 v~~ys~~~g~it~~~s--t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLS--TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----VIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred EEEEEecCCeEEEEEe--cCCCCCcceeeecccccCceEecCCceeEEEEecccc----eeeeeeccCCCccceEEEcCC
Confidence 9999998776444332 2469999999999999999999999999999998653 245556666777888888877
Q ss_pred --eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 288 --LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 288 --~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+++++| +.|++|+++. .+.+..+.||.++|.+++|..+-+. ..+.++|.+...+.-|-+|.+..
T Consensus 156 ~~~l~~as--~~ik~~~~~~--kevv~~ftgh~s~v~t~~f~~~~~g---~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIET--KEVVITFTGHGSPVRTLSFTTLIDG---IIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCEEEecc--ceEEEEEccC--ceEEEEecCCCcceEEEEEEEeccc---cccceeeeccccccceeEEEEEc
Confidence 777777 6899999754 4668899999999999999866111 12346677777788899998754
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.1e-10 Score=94.44 Aligned_cols=300 Identities=18% Similarity=0.274 Sum_probs=165.6
Q ss_pred ccceeeeEe--cCcEEEEecCCCeEEEeecCCCCc-c--cceeeec---cceeE-E-eecceeEEEEEcCc----eeEEE
Q 044557 19 NSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSS-E--LDQEFLS---NNNIV-A-VGKGAVKSLVVLAD----KLFSA 84 (362)
Q Consensus 19 ~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~-~--~~~~~~~---~~~~~-~-~~~~~v~~i~~~~~----~l~s~ 84 (362)
.+-|.+|.| +|.+||||..+|.|-++.-+.... + ...++.. ....+ + .-...+..+.+..+ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 456788888 499999999999999997543211 0 0111100 00000 0 01234445555432 35566
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|.+|++|.+......... ..++... -...++++... +.+..|-
T Consensus 105 tNdktiKlWKi~er~~k~~~----~~~~~~~-------------------------~~~~~~~lr~p------~~~~~~~ 149 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEG----YNLPEEG-------------------------PPGTITSLRLP------VEGRHDL 149 (433)
T ss_pred cCCcceeeeeeecccccccc----ccccccC-------------------------CCCccceeece------eeccccc
Confidence 77999999998654322100 0000000 01112222111 1111111
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehh----hhccccceeEEEEec
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV----LERHNSGINALALSC 240 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~----~~~h~~~v~~i~~s~ 240 (362)
.+ .-.+.+.+..+|+.-|+++.++.|...+-.+.|-.|.+|+++-......+... +..-..-|++..|+|
T Consensus 150 ~v------ea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp 223 (433)
T KOG1354|consen 150 EV------EASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHP 223 (433)
T ss_pred ee------eeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCH
Confidence 11 11234556678999999999999888776778889999988754433333221 112234578888999
Q ss_pred C-CCEEEEEcCCCcEEEEeccCCC-----CcEEE-------EEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCC
Q 044557 241 D-GSVLYSGACDRSIIVWEKEEDD-----GNILV-------VGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 241 ~-~~~l~s~~~d~~i~~wd~~~~~-----~~~~~-------~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~ 305 (362)
. ...++..+..|+|++.|++... .++.. ..-+.+-...|..+.|+. .+++|-.. -+|++||...
T Consensus 224 ~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 224 HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred hHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence 4 5678888889999999987311 10000 000111223566777864 46766554 6899999632
Q ss_pred CceeeeeEecCCCC---cEEEEE---eeecCCccCCCCCceEEEecCCCCcEEEEecccCcc
Q 044557 306 RNYTCLAVLEGHRG---PVKCLA---AAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLV 361 (362)
Q Consensus 306 ~~~~~~~~l~~h~~---~v~~~~---~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~~ 361 (362)
..+++.+..-|.. .+.++. ..-+...|.+++++..++|||.....|+++++..++
T Consensus 303 -e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 303 -EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred -cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 3344555444422 111110 001233456666677899999999999999765543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.7e-10 Score=98.93 Aligned_cols=141 Identities=18% Similarity=0.312 Sum_probs=112.4
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeee-ccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCCCCCcceeehhhhccc
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESIT-NAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHN 230 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~ 230 (362)
+...++-|...|.|-+|++..++.-..+. ..|.+.|.++.++.+- -+.+++.|+.+..|+...... +.....-+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~----~~~~~~~~ 144 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI----IRIWKEQK 144 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee----eeeeccCC
Confidence 44567778889999999999998777665 6799999999988665 489999999999999876542 22334456
Q ss_pred cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-------C-eEEEeeCCCcEEEee
Q 044557 231 SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-------D-LVCSGSADKTIRIWR 302 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~-~~~s~s~D~~i~~W~ 302 (362)
..+.+++++|||..|++|+ ++|++||+++.+ ++..+.||...|.++.|.. . ++.+...+..|.+|.
T Consensus 145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS--RQIKVLDIETKE----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred CccceEEEcCCCCEEEecc--ceEEEEEccCce----EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 6788999999999999997 589999998643 5678999999999998842 3 456666778899996
Q ss_pred C
Q 044557 303 G 303 (362)
Q Consensus 303 ~ 303 (362)
.
T Consensus 219 v 219 (541)
T KOG4547|consen 219 V 219 (541)
T ss_pred E
Confidence 4
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-09 Score=92.80 Aligned_cols=197 Identities=15% Similarity=0.299 Sum_probs=131.9
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcce
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
.++.++|++--..+|++..|-.|++|+-.. ++...+...-...|.+++|-|-+. ++.|+.. -|.+|..+.......
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence 467788998877899999999999999776 554555444455799999998763 5555555 589997654321111
Q ss_pred e--------ehh--hhccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--Ce
Q 044557 222 L--------VDV--LERHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DL 288 (362)
Q Consensus 222 ~--------~~~--~~~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~ 288 (362)
. ... -.+| .+|+++.|.+||..+++++. |..|++||...+.... +. .. -.+.+.-+.|++ +.
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p--L~-~~-glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP--LI-PK-GLGGFSLLKWSPDGDV 252 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--cc-cc-CCCceeeEEEcCCCCE
Confidence 1 011 1223 78999999999999999985 5679999998755432 21 11 234566667765 48
Q ss_pred EEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 289 VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 289 ~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+..++-|+..++|.. .+...+..-..+ ++.|....++|.+. .+|.+.+. .=+++.+.++
T Consensus 253 lfaAt~davfrlw~e-~q~wt~erw~lg-sgrvqtacWspcGs--------fLLf~~sg--sp~lysl~f~ 311 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQE-NQSWTKERWILG-SGRVQTACWSPCGS--------FLLFACSG--SPRLYSLTFD 311 (445)
T ss_pred EEEecccceeeeehh-cccceecceecc-CCceeeeeecCCCC--------EEEEEEcC--CceEEEEeec
Confidence 999999999999974 334444333333 33788887877653 46666653 3445555444
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-06 Score=78.45 Aligned_cols=206 Identities=19% Similarity=0.265 Sum_probs=127.2
Q ss_pred ceeEEEEecCCCEEEEEE-CCCcEEEEECCC-ceEEEe---ee---------ccCcccEEEEEEcCCCc-EEEE-eCCCe
Q 044557 144 AVSALALTKDETLLYSVS-WDRTIKIWRTSD-FKCLES---IT---------NAHDDAINAVALSDDGD-VYTG-SADKK 207 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~-~~~~~~---~~---------~~h~~~v~~v~~~~~~~-~~s~-~~dg~ 207 (362)
....++++|++++|+++. .++.|.++++.. +..... +. ........++.++|+|+ +++. -....
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADR 167 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTE
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCE
Confidence 345688999999998887 589999999976 332221 11 01123467899999997 4443 23458
Q ss_pred EEEEeCCCCCCcceeehhhh-ccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecCc----c--cee
Q 044557 208 IKVWRRSPGNKKHSLVDVLE-RHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRGH----T--KSI 279 (362)
Q Consensus 208 i~iw~~~~~~~~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h----~--~~v 279 (362)
|.+|+++...........+. ........++|+|++++++.. -.+++|.++++......+..+...... . ...
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 99999876542211111111 234567889999999988655 467889999988444444433332211 1 135
Q ss_pred EEEEEeCC---eEEEeeCCCcEEEeeCCC--CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 280 LCMAVVSD---LVCSGSADKTIRIWRGID--RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 280 ~~~~~~~~---~~~s~s~D~~i~~W~~~~--~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
..+.++++ ++++.-.+.+|-+|++.. ...+.+..+.........++++|+++ +++++.-.++.|.+|
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~--------~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR--------YLYVANQDSNTVSVF 319 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS--------EEEEEETTTTEEEEE
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC--------EEEEEecCCCeEEEE
Confidence 66777754 466777788999999733 24444555443344577888876543 466666778889999
Q ss_pred ecc
Q 044557 355 QIS 357 (362)
Q Consensus 355 ~~~ 357 (362)
+++
T Consensus 320 ~~d 322 (345)
T PF10282_consen 320 DID 322 (345)
T ss_dssp EEE
T ss_pred EEe
Confidence 885
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-08 Score=92.74 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=100.5
Q ss_pred eEEEEecCCCEEEEE-ECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-CCCeEEEE--eCCCCCC
Q 044557 146 SALALTKDETLLYSV-SWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS-ADKKIKVW--RRSPGNK 218 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~-s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg~i~iw--~~~~~~~ 218 (362)
....|+|||+.|+.. +.++ .|.+||+++++..+ +. .+...+....|+|+|+ ++..+ .++...+| ++.++..
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 457899999987754 4454 58889998876543 33 2334567889999997 54444 34555555 5554421
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCC---CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEee
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACD---RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGS 293 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s 293 (362)
..+ ..+........|+|||++|+..+.+ ..|.+||+.++. ...+.. .+. .....|++ .+++.++
T Consensus 324 -~~l----t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~--~~~--~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 324 -QRI----TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTD--TFL--DETPSIAPNGTMVIYSS 392 (429)
T ss_pred -EEe----ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCC--CCC--CCCceECCCCCEEEEEE
Confidence 122 1223345678899999998876544 357888887543 222211 111 12334544 4788777
Q ss_pred CCCc---EEEeeCCCCceeeeeEecCCCCcEEEEEeee
Q 044557 294 ADKT---IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI 328 (362)
Q Consensus 294 ~D~~---i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~ 328 (362)
.|+. +.+++.. +.....+.+|...+...+|+|
T Consensus 393 ~~~~~~~l~~~~~~---G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 393 SQGMGSVLNLVSTD---GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred cCCCceEEEEEECC---CCCeEECccCCCCcCCcccCC
Confidence 7765 4555542 233455677877777776654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=114.29 Aligned_cols=191 Identities=17% Similarity=0.283 Sum_probs=144.0
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
.++...|.++.-+|...+-+||+.||.+++|....++.+-.+...-...|+.+.|+.+|. +..+..||.+.+|....
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--
Confidence 456678899999999999999999999999998887766665544457888899987764 88899999999998752
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEc---CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEe
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGA---CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSG 292 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~ 292 (362)
+.....+.|+...+.+.|-. ..+++++ .++.+.+||...+... ..+. ..|.+.++++++.|. .++||
T Consensus 2283 ---k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2283 ---KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred ---cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-ceee--eecCCCceEEEEcCcceEEEec
Confidence 12223456888888888764 6677665 4568999997654332 2333 679999999999876 79999
Q ss_pred eCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 293 SADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 293 s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
+.+|.|++||+..++ +++.+.. . +...++++|+..|.|+||++.-+.
T Consensus 2355 gr~G~v~l~D~rqrq--l~h~~~~-----~--------------~~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQ--LRHTFQA-----L--------------DTREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred CCcCcEEEeehHHHH--HHHHhhh-----h--------------hhhheeeccCcccceEEEEccccc
Confidence 999999999975432 3333322 1 123578999999999999997553
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-08 Score=90.74 Aligned_cols=193 Identities=14% Similarity=0.036 Sum_probs=109.4
Q ss_pred cCceeEEEEecCCCEEEEEEC---CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCC--eEEEEeCC
Q 044557 142 VDAVSALALTKDETLLYSVSW---DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADK--KIKVWRRS 214 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg--~i~iw~~~ 214 (362)
...+.+.+|+|||+.|+..+. +..|.+|++.+++... +. .....+...+|+|+|+ ++ +.+.+| .|.+||+.
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-cc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 456788999999998886542 4579999998875432 21 1222344678999997 44 334455 58888987
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEE
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCS 291 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s 291 (362)
++... . +..+...+....|+|||+.|+..+. ++...+|.+.........+ ..+........+++ +.++.
T Consensus 276 tg~~~-~----lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---t~~~~~~~~~~~SpDG~~Ia~ 347 (429)
T PRK03629 276 SGQIR-Q----VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---TWEGSQNQDADVSSDGKFMVM 347 (429)
T ss_pred CCCEE-E----ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---ecCCCCccCEEECCCCCEEEE
Confidence 65422 1 1223446778999999998876665 4455555433222222222 22223334455655 45555
Q ss_pred eeC-C--CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc---EEEEecc
Q 044557 292 GSA-D--KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD---IKVWQIS 357 (362)
Q Consensus 292 ~s~-D--~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~---i~~W~~~ 357 (362)
.+. + ..|.+|+....... .+... .......|+|++ .+|+.++.|+. +.+|++.
T Consensus 348 ~~~~~g~~~I~~~dl~~g~~~---~Lt~~-~~~~~p~~SpDG---------~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 348 VSSNGGQQHIAKQDLATGGVQ---VLTDT-FLDETPSIAPNG---------TMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEccCCCceEEEEECCCCCeE---EeCCC-CCCCCceECCCC---------CEEEEEEcCCCceEEEEEECC
Confidence 443 3 34777886443322 23211 112334555543 44666666654 6677764
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-07 Score=87.65 Aligned_cols=176 Identities=12% Similarity=0.004 Sum_probs=105.9
Q ss_pred eecCceeEEEEecCCCEEEEEEC---CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCCe--EEEEe
Q 044557 140 HHVDAVSALALTKDETLLYSVSW---DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSADKK--IKVWR 212 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~--i~iw~ 212 (362)
.|...+.+.+|+|||+.|+..+. +..|.+||+.+++... +. .+.+.+...+|+|+|+ + ++.+.++. |.+||
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 35567889999999998887763 4689999998876532 32 3445667889999997 4 45566665 66668
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CC--cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DR--SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-- 287 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-- 287 (362)
+.++... .+..+........|+|||+.|+..+. ++ .|.++|+.... ...+ ..+...+....|+++
T Consensus 277 ~~~~~~~-----~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~--~~~l---t~~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 277 LRSGTTT-----RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN--PRRI---SFGGGRYSTPVWSPRGD 346 (435)
T ss_pred CCCCceE-----EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC--eEEe---ecCCCcccCeEECCCCC
Confidence 7665321 12334455667899999998886663 33 57777765432 2222 112333444556544
Q ss_pred eEEEeeCC---CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCC
Q 044557 288 LVCSGSAD---KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDND 331 (362)
Q Consensus 288 ~~~s~s~D---~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~ 331 (362)
.++..+.+ ..|.+|+..... ...+. ....+...+|+|+++
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~---~~~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSG---ERILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCc---eEecc-CCCCCCCCeECCCCC
Confidence 55554433 346677743222 22222 222355666766543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-06 Score=76.66 Aligned_cols=256 Identities=15% Similarity=0.211 Sum_probs=143.5
Q ss_pred cCcEEEEecC----CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEe-cCCcEEEEecCCCCC
Q 044557 28 AGKFLYTGSS----DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAH-QDHKIRVWKINNQEP 100 (362)
Q Consensus 28 ~~~~l~t~s~----Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~-~dg~i~~w~~~~~~~ 100 (362)
.+++|++... ++.|-.|++......+... ...... -.....+.+. +..|+++. .+|+|.++++.....
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~----~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL----NSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE----EEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEe----eeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 4666766655 5788888876532211110 001111 1223345554 34577775 589999999975421
Q ss_pred CcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEEECCCce--E-
Q 044557 101 DHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIWRTSDFK--C- 176 (362)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~--~- 176 (362)
..... ........+ +.... ......-++.++|+++++++.. ....|.+|++.... .
T Consensus 122 l~~~~-~~~~~~g~g--------~~~~r-----------q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 122 LGEVV-QTVRHEGSG--------PNPDR-----------QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp EEEEE-EEEESEEEE--------SSTTT-----------TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred cceee-eecccCCCC--------Ccccc-----------cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 11000 000000000 00000 0112345788999999888764 34589999987643 2
Q ss_pred -EEeeeccCcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeeh---hhh-c--cccceeEEEEecCCCEEEE
Q 044557 177 -LESITNAHDDAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVD---VLE-R--HNSGINALALSCDGSVLYS 247 (362)
Q Consensus 177 -~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~---~~~-~--h~~~v~~i~~s~~~~~l~s 247 (362)
...+........+.++|+|+++ + ++.-.+++|.++++.......+... .+. . .......|+++|||++|++
T Consensus 182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 2333334556688999999997 3 4556788999998873222222211 111 1 1125678999999999887
Q ss_pred Ec-CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeE-EEeeCCCcEEEeeCCCCce
Q 044557 248 GA-CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLV-CSGSADKTIRIWRGIDRNY 308 (362)
Q Consensus 248 ~~-~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~-~s~s~D~~i~~W~~~~~~~ 308 (362)
+. ..+.|.+|++....+.+..+..........+.+++++ +++ ++...++.|.+|+....++
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 65 5678999999655556666665554444567888865 454 4555778899998643333
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.6e-10 Score=110.13 Aligned_cols=175 Identities=19% Similarity=0.329 Sum_probs=124.6
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS 159 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 159 (362)
+.++|++||.+++|....+.. +.... ..-...|+.+.|+.+|+.+..
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~-------v~~~r--------------------------t~g~s~vtr~~f~~qGnk~~i 2268 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQ-------VVCFR--------------------------TAGNSRVTRSRFNHQGNKFGI 2268 (2439)
T ss_pred eEEecCCCceEEEEeccCCCe-------EEEee--------------------------ccCcchhhhhhhcccCCceee
Confidence 578999999999997644321 00000 011256777889999999999
Q ss_pred EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEE---eCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 160 VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTG---SADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~---~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
+..||.+.+|... .+.....+ .|.......+|-..+ ++++ +.++.+.+||.--.. ...++. ..|..+++++
T Consensus 2269 ~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~s~-~~tag~s~d~~n~~lwDtl~~~-~~s~v~--~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2269 VDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIGSL-LATAGRSSDNRNVCLWDTLLPP-MNSLVH--TCHDGGATVL 2342 (2439)
T ss_pred eccCCceeecccC-Ccceeccc-cCCccccceeeeehh-hhccccCCCCCcccchhcccCc-ccceee--eecCCCceEE
Confidence 9999999999987 34444443 577777777776533 4443 467899999965332 234444 5799999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~ 305 (362)
++.|.-+.|++||.+|.|++||++..+ +. |.-+. +. ..+++++|+..|.|+||++..
T Consensus 2343 ~~~P~~qllisggr~G~v~l~D~rqrq----l~-----h~~~~--~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQ----LR-----HTFQA--LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred EEcCcceEEEecCCcCcEEEeehHHHH----HH-----HHhhh--hh-hhheeeccCcccceEEEEccc
Confidence 999999999999999999999997532 11 22111 22 346899999999999999643
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.5e-08 Score=89.16 Aligned_cols=174 Identities=15% Similarity=0.065 Sum_probs=102.1
Q ss_pred ecCceeEEEEecCCCEEEEEECC---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCC--eEEEEeC
Q 044557 141 HVDAVSALALTKDETLLYSVSWD---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSADK--KIKVWRR 213 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg--~i~iw~~ 213 (362)
+...+.+.+|+||++.|+.++.+ ..|.+||+.+++... +. .......+.+|+|+|+ + ++.+.+| .|.+||+
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~-~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VA-SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ec-cCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 34567788999999998887743 469999998776533 22 2233445788999997 4 3555555 5888998
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEc-CCCc--EEEEeccCCCCcEEEEEeecCccceeEEEEEeC--Ce
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRS--IIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DL 288 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~--i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~ 288 (362)
.++... .+..+.......+|+|||+.|+..+ .++. |.++++..+. ...+. ..+ ......+|++ +.
T Consensus 280 ~~g~~~-----~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt-~~g--~~~~~~~~SpDG~~ 349 (433)
T PRK04922 280 GSRQLT-----RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--AERLT-FQG--NYNARASVSPDGKK 349 (433)
T ss_pred CCCCeE-----ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEee-cCC--CCccCEEECCCCCE
Confidence 766421 1223444456789999999888665 3555 5555654432 22221 222 2233456654 45
Q ss_pred EEEeeCC-C--cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 289 VCSGSAD-K--TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 289 ~~s~s~D-~--~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
++..+.+ + .|.+|+...... ..+. +........|+|++
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~---~~Lt-~~~~~~~p~~spdG 390 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSV---RTLT-PGSLDESPSFAPNG 390 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCe---EECC-CCCCCCCceECCCC
Confidence 5544333 2 588888643322 2332 22233445666554
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=86.43 Aligned_cols=203 Identities=19% Similarity=0.287 Sum_probs=133.0
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCce-----EEEeeeccC------------cccEEEEEEcCCCc---EEE
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-----CLESITNAH------------DDAINAVALSDDGD---VYT 201 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~~h------------~~~v~~v~~~~~~~---~~s 201 (362)
.+-|.++.|...|.+||+|..+|+|-++.-+... ....++ .| ...|..+.|.+++. ++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 3568899999999999999999999999643321 111221 23 33578899987763 678
Q ss_pred EeCCCeEEEEeCCCCCCcc---------------e--e--e-------------hhhhccccceeEEEEecCCCEEEEEc
Q 044557 202 GSADKKIKVWRRSPGNKKH---------------S--L--V-------------DVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 202 ~~~dg~i~iw~~~~~~~~~---------------~--~--~-------------~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
.+.|++|++|.+....... + + . .....|..-|++|++..|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8899999999875432111 0 0 0 01235777899999999999988875
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCc-----cceeEEEEEeCC---eEEEeeCCCcEEEeeCCCC-----ceee------
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGH-----TKSILCMAVVSD---LVCSGSADKTIRIWRGIDR-----NYTC------ 310 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~-----~~~~------ 310 (362)
|=.|.+|.++-......++- ++-+ +.-|++-.|.|. +++=.|.-|+||+-|+... ..++
T Consensus 184 -dLRINLWnlei~d~sFnIVD-IKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVD-IKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -ceeeeeccccccCCceeEEE-ccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 77899999876555554433 2222 233566667653 6777777899999986421 1010
Q ss_pred ---eeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 311 ---LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 311 ---~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..-+.+--+.|.++.|+++| +||+|=+. -+|++||+.
T Consensus 262 p~~rsffseiIsSISDvKFs~sG---------ryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSG---------RYILSRDY-LTVKLWDLN 301 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCC---------cEEEEecc-ceeEEEecc
Confidence 11133344567888887553 56665432 689999994
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.6e-08 Score=88.88 Aligned_cols=179 Identities=14% Similarity=0.084 Sum_probs=104.4
Q ss_pred ecCceeEEEEecCCCEEEEEECC---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCCeEEEEeCCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWD---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADKKIKVWRRSP 215 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg~i~iw~~~~ 215 (362)
+.+.+.+.+|+||++.|+..+.+ ..|.+||+.+++... +. ...+.....+|+|+|. ++ +.+.+|...||.++.
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VA-NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-ee-cCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 45667889999999988877643 359999998876533 22 1234456789999996 54 567788777775432
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEe
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSG 292 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~ 292 (362)
..... ..+..+........|+|||+.|+..+. ++...+|.+.........+. ..+ .......|++ +.++..
T Consensus 272 ~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g--~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 272 DGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTG--SYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCC--CCcCceEECCCCCEEEEE
Confidence 21111 122234444567889999998876553 56667776543222222221 222 2222345554 466655
Q ss_pred eCCC---cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCC
Q 044557 293 SADK---TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDND 331 (362)
Q Consensus 293 s~D~---~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~ 331 (362)
+.++ .|.+|+...... ..+..+ .......|+|++.
T Consensus 346 s~~~g~~~I~v~d~~~g~~---~~lt~~-~~~~~p~~spdg~ 383 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQV---TALTDT-TRDESPSFAPNGR 383 (427)
T ss_pred EccCCcEEEEEEECCCCCe---EEccCC-CCccCceECCCCC
Confidence 5443 588998644332 223222 2234566766654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-07 Score=87.99 Aligned_cols=113 Identities=20% Similarity=0.198 Sum_probs=70.6
Q ss_pred ceeEEEEecCCCEEE-EEECCCcEEEEEC--CCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-CCCeEEEEeCC--CC
Q 044557 144 AVSALALTKDETLLY-SVSWDRTIKIWRT--SDFKCLESITNAHDDAINAVALSDDGD-VYTGS-ADKKIKVWRRS--PG 216 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~-s~s~d~~i~iwd~--~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg~i~iw~~~--~~ 216 (362)
.+.+.+|+||++.|+ +.+.++...||.+ ..+. ...+. .+........|+|+|+ ++..+ .+|...+|.+. ++
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 345678999998776 5677887777754 4443 33343 2444456678999997 54333 45666777553 32
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCC---cEEEEeccCCC
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR---SIIVWEKEEDD 263 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~---~i~~wd~~~~~ 263 (362)
. ...+. . ........+|+|||++|+..+.++ .|.+||+..++
T Consensus 319 ~-~~~lt--~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 319 A-AQRVT--F--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred c-eEEEe--c--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 2 11121 1 122234578999999998776654 59999987643
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.7e-08 Score=82.86 Aligned_cols=145 Identities=21% Similarity=0.329 Sum_probs=94.4
Q ss_pred cCceeEEEEecCCC-EEEEEECCCcEEEEECCCc----e--------EEEeeeccCcccEEEEEEcCCCc-EEEEe-CCC
Q 044557 142 VDAVSALALTKDET-LLYSVSWDRTIKIWRTSDF----K--------CLESITNAHDDAINAVALSDDGD-VYTGS-ADK 206 (362)
Q Consensus 142 ~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~----~--------~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg 206 (362)
+..|.|++|-|.+. .|+.| .-+-|.||..... + +.+.+.....-+|+++.|++||. +++++ .|.
T Consensus 140 QrnvtclawRPlsaselavg-Cr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVG-CRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred hcceeEEEeccCCcceeeee-ecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence 35689999998764 45555 4688999976431 1 11112222235899999999997 66665 567
Q ss_pred eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC
Q 044557 207 KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS 286 (362)
Q Consensus 207 ~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 286 (362)
.|.|||.+++.+.. +. ....+.++-+.|||||.+|+++.-|+..++|....... ...+.--.++|..-.|++
T Consensus 219 si~iWdpdtg~~~p-L~---~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt----~erw~lgsgrvqtacWsp 290 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIP-LI---PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT----KERWILGSGRVQTACWSP 290 (445)
T ss_pred eEEEEcCCCCCccc-cc---ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccce----ecceeccCCceeeeeecC
Confidence 89999999876432 21 23456788999999999999999999999995432111 111111234676666654
Q ss_pred C---eEEEeeCC
Q 044557 287 D---LVCSGSAD 295 (362)
Q Consensus 287 ~---~~~s~s~D 295 (362)
. ++.+.+..
T Consensus 291 cGsfLLf~~sgs 302 (445)
T KOG2139|consen 291 CGSFLLFACSGS 302 (445)
T ss_pred CCCEEEEEEcCC
Confidence 3 44555543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-06 Score=77.03 Aligned_cols=268 Identities=12% Similarity=0.120 Sum_probs=143.1
Q ss_pred EEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccceeee
Q 044557 32 LYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYTRLA 109 (362)
Q Consensus 32 l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~ 109 (362)
+++-..++.|.+.|..+.+ ...... .+.+.-..+.+.+ .++++++.||.|.++|+.+.+. +.
T Consensus 9 ~V~~~~~~~v~viD~~t~~--~~~~i~-------~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-------v~ 72 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNK--VVARIP-------TGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-------VA 72 (369)
T ss_dssp EEEEGGGTEEEEEETTT-S--EEEEEE--------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-------EE
T ss_pred EEEecCCCEEEEEECCCCe--EEEEEc-------CCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-------EE
Confidence 4566778999999976533 111111 1111112234444 4589999999999999976541 11
Q ss_pred eccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEEECCCceEEEeeecc-----
Q 044557 110 TLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIWRTSDFKCLESITNA----- 183 (362)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~----- 183 (362)
.++ -......+++++||++++++. .++.+.++|.++.+.++.+...
T Consensus 73 ~i~----------------------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~ 124 (369)
T PF02239_consen 73 TIK----------------------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD 124 (369)
T ss_dssp EEE-----------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT
T ss_pred EEe----------------------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc
Confidence 111 122357899999999988765 7899999999999888766422
Q ss_pred -CcccEEEEEEcCCCc-EEEEe-CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEec
Q 044557 184 -HDDAINAVALSDDGD-VYTGS-ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEK 259 (362)
Q Consensus 184 -h~~~v~~v~~~~~~~-~~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~ 259 (362)
....+..+..+|... ++..- .-+.|.+-|........ ...+ ..........|+|++++++.+ ..++.|-++|.
T Consensus 125 ~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~~~i-~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 125 GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--VTTI-KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--EEEE-E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--eeee-cccccccccccCcccceeeecccccceeEEEee
Confidence 123466777777776 55444 44788888876543221 1111 122334568899999987664 56778999998
Q ss_pred cCCCCcEEEEEe-ecCccceeEEE-----------EEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 260 EEDDGNILVVGA-LRGHTKSILCM-----------AVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 260 ~~~~~~~~~~~~-~~~h~~~v~~~-----------~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
.+... ...+.. ...|..++..+ .-...+.++.-....+.+|+. ..++.++++...... .-+..+
T Consensus 202 ~~~k~-v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~--~~wkvv~~I~~~G~g-lFi~th 277 (369)
T PF02239_consen 202 KTGKL-VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDD--YAWKVVKTIPTQGGG-LFIKTH 277 (369)
T ss_dssp TTTEE-EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STT--TBTSEEEEEE-SSSS---EE--
T ss_pred ccceE-EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchh--hcCeEEEEEECCCCc-ceeecC
Confidence 75321 111111 11133222222 111233333333345667773 457778888776666 556666
Q ss_pred ecCCccCCCCCceEEEe---cCCCCcEEEEeccc
Q 044557 328 IDNDRCDSSDTSYLVCS---GSLDCDIKVWQISF 358 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s---~s~D~~i~~W~~~~ 358 (362)
|++. ++.+. +....+|.++|...
T Consensus 278 P~s~--------~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 278 PDSR--------YVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp TT-S--------EEEEE-TT-SSHT-EEEEECCG
T ss_pred CCCc--------cEEeeccCCCCCceEEEEECcC
Confidence 6543 33333 35567899999864
|
... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.5e-08 Score=87.64 Aligned_cols=204 Identities=15% Similarity=0.218 Sum_probs=132.2
Q ss_pred eecCceeEEEEecCCCE-EEEEECCCcEEEEECCCceEE----------E--eee---------------ccCc--c---
Q 044557 140 HHVDAVSALALTKDETL-LYSVSWDRTIKIWRTSDFKCL----------E--SIT---------------NAHD--D--- 186 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~----------~--~~~---------------~~h~--~--- 186 (362)
.|...-+.|..+|||+| +|+|..--.|++||+...... . .+. .-|. +
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 45667788999999997 566778889999998753211 0 000 0010 0
Q ss_pred ------cEEEEEEc-CCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEec
Q 044557 187 ------AINAVALS-DDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 187 ------~v~~v~~~-~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
.-..++++ |.-.++.++....|.-++++.|.... .+.....+++++.+++-..+|++|+.||.|-+||.
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~----P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN----PFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEcccccccc----ccccccccceeeeecCccceEEecccCceEEEecc
Confidence 01233333 23346777777788888888775332 23334578999999999999999999999999998
Q ss_pred cCCCCcEEE--EEeecCccc-----eeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 260 EEDDGNILV--VGALRGHTK-----SILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 260 ~~~~~~~~~--~~~~~~h~~-----~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
+.......+ ......|.+ .|+++.|..+ .++.|..+|.|.|||+..+..- +..-.+-.-+|..+.|.+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-~~kdh~~e~pi~~l~~~~~- 282 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-LVKDHGYELPIKKLDWQDT- 282 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-eecccCCccceeeeccccc-
Confidence 753321111 111223333 3899999764 7999999999999997654432 2233345567888887654
Q ss_pred CccCCCCCceEEEecCCCCcEEEEec
Q 044557 331 DRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 331 ~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+.+..|+|. +-..+||||-
T Consensus 283 ------~~q~~v~S~-Dk~~~kiWd~ 301 (703)
T KOG2321|consen 283 ------DQQNKVVSM-DKRILKIWDE 301 (703)
T ss_pred ------CCCceEEec-chHHhhhccc
Confidence 223456655 3456999985
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-07 Score=87.90 Aligned_cols=110 Identities=19% Similarity=0.145 Sum_probs=70.4
Q ss_pred eEEEEecCCCEEE-EEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-CCCe--EEEEeCCCCCC
Q 044557 146 SALALTKDETLLY-SVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS-ADKK--IKVWRRSPGNK 218 (362)
Q Consensus 146 ~~~~~~~~~~~l~-s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg~--i~iw~~~~~~~ 218 (362)
.+.+|+|||+.|+ +.+.++ .|.+||+.+++..+ +. .+.......+|+|+|+ ++.++ .+|. |.++++.++..
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 4678999998765 555555 59999998876533 33 3434456789999997 54443 4555 55556655432
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCC---cEEEEeccCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDR---SIIVWEKEED 262 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~---~i~~wd~~~~ 262 (362)
..+. .+.......+|+|||++|+..+.++ .|.+||+.++
T Consensus 329 -~~lt----~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 329 -ERLT----FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred -EEee----cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 1221 1223344689999999998765443 5889998654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=99.05 Aligned_cols=210 Identities=16% Similarity=0.269 Sum_probs=144.9
Q ss_pred eeEEEEecCC--CEEEEEECCCcEEEEECCC--ceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCC
Q 044557 145 VSALALTKDE--TLLYSVSWDRTIKIWRTSD--FKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 145 v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~ 218 (362)
|-.+.|+|.. .+-++......-.+|++.. .+.++-+..+|+.+|+.+-|+|+.. +++++.|-.|..||+.+...
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 3445555432 3434444455666898754 3466777789999999999999875 78899999999999986542
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCeEEEeeCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDLVCSGSAD 295 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D 295 (362)
.+.....-..+-+.+.|+--...+.+.+..+.|++||++.+... +..+++|...|..++|. ...+.+.+.|
T Consensus 150 ---p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~p---l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d 223 (1081)
T KOG0309|consen 150 ---PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTP---LCSLKGHVSSVNSIDFNRFKYSEIMSSSND 223 (1081)
T ss_pred ---ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcc---eEEecccceeeehHHHhhhhhhhhcccCCC
Confidence 12112222345677889876666666777888999999876543 44577898888888875 3478899999
Q ss_pred CcEEEeeCCC-----------------------------------------------------CceeeeeEecCCCCcEE
Q 044557 296 KTIRIWRGID-----------------------------------------------------RNYTCLAVLEGHRGPVK 322 (362)
Q Consensus 296 ~~i~~W~~~~-----------------------------------------------------~~~~~~~~l~~h~~~v~ 322 (362)
++|++|+... ....+++++.||.+.|.
T Consensus 224 ~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~ 303 (1081)
T KOG0309|consen 224 GTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL 303 (1081)
T ss_pred CceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence 9999998431 01244567888988887
Q ss_pred EEEeeecCCc-cCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 323 CLAAAIDNDR-CDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 323 ~~~~~~~~~~-~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
...|-..+.. .+.....+.|++=|.|.++|+|-+....
T Consensus 304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i 342 (1081)
T KOG0309|consen 304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQI 342 (1081)
T ss_pred HHhhhhcccccCCCCccceeEEEeecCCceEeeeccHHH
Confidence 6655432210 1123345679999999999999886543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-07 Score=76.94 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=124.0
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEE--EeeeccCcccEEEEEEcCCC-c-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCL--ESITNAHDDAINAVALSDDG-D-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~h~~~v~~v~~~~~~-~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
..++.|++.+.-++++-.+|.+.+-+....... +++ +.|+-+.+-..|+... . +++|+.|+.+.-||+...+ .
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--T 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCCCceEEecCCCceEEEEEecCCc--c
Confidence 356778888888999888999985554443332 244 4798899999998544 3 7899999999999998322 1
Q ss_pred eeehhhhccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCC
Q 044557 221 SLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADK 296 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~ 296 (362)
-+....+.|..+|.+|.-+| .+.+|++|+.|-.|++||.++-..++.. . .-.+.|..+...+. .+..+..-+
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~---~v~GGVWRi~~~p~~~~~lL~~CMh~ 276 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-A---KVGGGVWRIKHHPEIFHRLLAACMHN 276 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-C---ccccceEEEEecchhhhHHHHHHHhc
Confidence 22233556899999998776 6789999999999999998853332211 1 12356766666553 223333334
Q ss_pred cEEEeeCCCCcee---eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEec-CCCCcEE-EEec
Q 044557 297 TIRIWRGIDRNYT---CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG-SLDCDIK-VWQI 356 (362)
Q Consensus 297 ~i~~W~~~~~~~~---~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-s~D~~i~-~W~~ 356 (362)
..++-+......+ .....++|.+-...-.+ +...-+|+|+ ..|+.++ +|-.
T Consensus 277 G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW---------d~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 277 GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW---------DSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred CceEEEecccccchheeeeccccccceeecccc---------ccccceeeeeeccccceeeeeee
Confidence 4555554332222 23344566655544332 1122357775 5788866 8854
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-06 Score=78.56 Aligned_cols=177 Identities=12% Similarity=0.095 Sum_probs=103.4
Q ss_pred CEEEEEECCCcEEEEECCCceEEEeeeccCcc---c------EEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 155 TLLYSVSWDRTIKIWRTSDFKCLESITNAHDD---A------INAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 155 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~---~------v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
..++.+..++.+..+|.++++.+-........ . +.+--.-.++.++.++.+|.+..||..+++......
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-- 268 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-- 268 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec--
Confidence 36677888899999999888754332111000 0 000001124568888899999999998875332211
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCC
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~ 305 (362)
... ... ...++..++.++.||.+..+|..+++.. .....+.+ .........++.++.++.||.+.+++..
T Consensus 269 ---~~~-~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~~~~~--~~~ssp~i~g~~l~~~~~~G~l~~~d~~- 338 (377)
T TIGR03300 269 ---ASS-YQG--PAVDDNRLYVTDADGVVVALDRRSGSEL-WKNDELKY--RQLTAPAVVGGYLVVGDFEGYLHWLSRE- 338 (377)
T ss_pred ---cCC-ccC--ceEeCCEEEEECCCCeEEEEECCCCcEE-EccccccC--CccccCEEECCEEEEEeCCCEEEEEECC-
Confidence 111 111 1235778888999999999998765421 11111111 1122333456788999999999999853
Q ss_pred CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 306 RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 306 ~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
+++.+..+..+...+..--...+ +. |+.++.||.|..+
T Consensus 339 -tG~~~~~~~~~~~~~~~sp~~~~---------~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 -DGSFVARLKTDGSGIASPPVVVG---------DG-LLVQTRDGDLYAF 376 (377)
T ss_pred -CCCEEEEEEcCCCccccCCEEEC---------CE-EEEEeCCceEEEe
Confidence 35556666655543332211111 12 6678889998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-07 Score=78.22 Aligned_cols=185 Identities=19% Similarity=0.255 Sum_probs=112.9
Q ss_pred eeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce---eEEEecCCcEEEEecCCC
Q 044557 22 VSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK---LFSAHQDHKIRVWKINNQ 98 (362)
Q Consensus 22 V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---l~s~~~dg~i~~w~~~~~ 98 (362)
.-+++..|+|+|+++.- .+-|-|.++.+. .+-+.- -..+.-+.+..+. |..+..|+.|++|++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--~qlf~c--------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--HQLFLC--------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP 81 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH--HHHHHH--------HHHhhheeeeccceeeeeeeeccceEEEEEeecc
Confidence 44556679999999765 677778766431 111100 0122223333332 556788999999998643
Q ss_pred CCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCE-EEEEECCCcEEEEECCCceEE
Q 044557 99 EPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL-LYSVSWDRTIKIWRTSDFKCL 177 (362)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~ 177 (362)
+-. +.+..-.+.+.++.|+|||+. |.+...|-+|.+|.+.+.+..
T Consensus 82 ew~----------------------------------ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 82 EWY----------------------------------CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred eeE----------------------------------EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 310 111123456788999999965 556778899999999887764
Q ss_pred EeeeccCcccEEEEEEcCCCcEEEEeC-------------------------------------CCeEEEEeCCCCCCcc
Q 044557 178 ESITNAHDDAINAVALSDDGDVYTGSA-------------------------------------DKKIKVWRRSPGNKKH 220 (362)
Q Consensus 178 ~~~~~~h~~~v~~v~~~~~~~~~s~~~-------------------------------------dg~i~iw~~~~~~~~~ 220 (362)
..- .....+..++|+|+|++.+-.+ +..+.+||.--..
T Consensus 128 ~~~--~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley--- 202 (447)
T KOG4497|consen 128 LLP--HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY--- 202 (447)
T ss_pred Eec--ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh---
Confidence 321 1233457888999887543211 1123334321000
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
+. .......++..++|+|-+++|+.|+.|+.+|+-+
T Consensus 203 kv--~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 203 KV--YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ee--eeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 00 0111236788999999999999999999998754
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-07 Score=78.27 Aligned_cols=182 Identities=16% Similarity=0.197 Sum_probs=118.3
Q ss_pred CcEEEEECCCceEEE--eeeccCcccEEEEEEcC---CCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhcccc---ce
Q 044557 164 RTIKIWRTSDFKCLE--SITNAHDDAINAVALSD---DGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS---GI 233 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~--~~~~~h~~~v~~v~~~~---~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~---~v 233 (362)
|.+.+|++.+.+... .++...+..+..+.|.- +|. ++-+-.+|.|.+|.......... ...+..-.. .-
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~-L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH-LRGLSSKKISVVEA 124 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee-ecccchhhhhheee
Confidence 567777776654332 33333445566666652 333 45567788898886543321111 111111111 12
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCeEEEeeCCCcEEEeeCCCCceee
Q 044557 234 NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDLVCSGSADKTIRIWRGIDRNYTC 310 (362)
Q Consensus 234 ~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D~~i~~W~~~~~~~~~ 310 (362)
-++.|++-+..++++-.+|.+.+-+.. ...+..+..++.|.-.+....|+ ++++.+||.|+.+..||..-++ +.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t--~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYET--EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecc--eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce
Confidence 467788989999999999999844332 22333344788898887777775 6799999999999999975333 23
Q ss_pred e-eEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 311 L-AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 311 ~-~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+ ..-+-|...|.++.-+| +.+.+|++||.|-.|++||..
T Consensus 202 i~~n~kvH~~GV~SI~ss~--------~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSP--------PKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred eeecceeeecceEEEecCC--------CCCceEEEeccccceeeeehh
Confidence 3 33556888898887654 445789999999999999985
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-09 Score=90.23 Aligned_cols=110 Identities=17% Similarity=0.248 Sum_probs=79.8
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 147 ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
-++|+|+|+++|+++.- ++-|=|.++.+..+.+.- -+.|.-+.|..+.. +.....|+.|.+|++...+ ..-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe----w~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE----WYC 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeecce----eEE
Confidence 46799999999999865 777878877665443321 23456677777764 4456788999999987543 222
Q ss_pred hhhccccceeEEEEecCCCE-EEEEcCCCcEEEEeccCCC
Q 044557 225 VLERHNSGINALALSCDGSV-LYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~~~~~-l~s~~~d~~i~~wd~~~~~ 263 (362)
.+...+.++.+++|||||++ |.+...|-.|.+|++.+..
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~ 125 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK 125 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence 34556788999999999965 5567789999999997643
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-06 Score=81.98 Aligned_cols=197 Identities=15% Similarity=0.062 Sum_probs=114.0
Q ss_pred eeeecccCccceeeeEec--CcEEEEecC---CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--ee-E
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSS---DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KL-F 82 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~---Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l-~ 82 (362)
..+.|..|...+.+..|+ |+.|+..+. +..|.+||+.+..... +....+.+....++++ .| +
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~----------l~~~~g~~~~~~~SPDG~~la~ 262 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL----------VGNFPGMTFAPRFSPDGRKVVM 262 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE----------eecCCCcccCcEECCCCCEEEE
Confidence 445567788889999884 777776653 4689999987543211 1112233444455544 34 5
Q ss_pred EEecCCc--EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 83 SAHQDHK--IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 83 s~~~dg~--i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
+.+.++. |.+|++..+.. ..+ ..+........|+||++.|+..
T Consensus 263 ~~~~~g~~~Iy~~d~~~~~~-----~~L------------------------------t~~~~~~~~~~~spDG~~i~f~ 307 (435)
T PRK05137 263 SLSQGGNTDIYTMDLRSGTT-----TRL------------------------------TDSPAIDTSPSYSPDGSQIVFE 307 (435)
T ss_pred EEecCCCceEEEEECCCCce-----EEc------------------------------cCCCCccCceeEcCCCCEEEEE
Confidence 6666666 55556543321 000 0112233457899999988876
Q ss_pred EC-CC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC---CeEEEEeCCCCCCcceeehhhhccccce
Q 044557 161 SW-DR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD---KKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 161 s~-d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
+. ++ .|.+||+..++.. .+.. +...+....|+|+|+ ++....+ ..|.+||+..+. . ..+. ....+
T Consensus 308 s~~~g~~~Iy~~d~~g~~~~-~lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~-~~lt----~~~~~ 379 (435)
T PRK05137 308 SDRSGSPQLYVMNADGSNPR-RISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-E-RILT----SGFLV 379 (435)
T ss_pred ECCCCCCeEEEEECCCCCeE-Eeec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-e-Eecc----CCCCC
Confidence 63 33 5778887765543 2332 234456678999997 4443332 367888875443 2 1111 12246
Q ss_pred eEEEEecCCCEEEEEcCCC------cEEEEecc
Q 044557 234 NALALSCDGSVLYSGACDR------SIIVWEKE 260 (362)
Q Consensus 234 ~~i~~s~~~~~l~s~~~d~------~i~~wd~~ 260 (362)
....|+|||+.|+..+.++ .+.++|+.
T Consensus 380 ~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 6789999999887655432 45556654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.4e-07 Score=83.12 Aligned_cols=153 Identities=16% Similarity=0.062 Sum_probs=95.0
Q ss_pred ecCceeEEEEecCCCEEEEEECC---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCC--eEEEEeC
Q 044557 141 HVDAVSALALTKDETLLYSVSWD---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADK--KIKVWRR 213 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg--~i~iw~~ 213 (362)
+...+...+|+||++.|+.++.+ ..|.+||+.+++... +. .+...+.+++|+|+|+ ++ +.+.++ .|.+|++
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VA-SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ee-cCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 34457788899999998887654 479999998875433 22 2445566789999996 54 444444 5888888
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CC--cEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--Ce
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DR--SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DL 288 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~ 288 (362)
.++... . +..+........|+|||+.|+..+. ++ .|.++++...+ ... +..+........+++ +.
T Consensus 266 ~~~~~~-~----l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~---l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 266 DGKQLT-R----LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRR---LTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred CCCCEE-E----CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEE---eecCCCCccCeEECCCCCE
Confidence 765321 1 1223344556789999998876554 33 46677765432 222 222334445556654 46
Q ss_pred EEEeeCCC---cEEEeeCCC
Q 044557 289 VCSGSADK---TIRIWRGID 305 (362)
Q Consensus 289 ~~s~s~D~---~i~~W~~~~ 305 (362)
++.++.++ .|.+|+...
T Consensus 336 i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred EEEEEccCCceEEEEEeCCC
Confidence 66666654 577777543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-05 Score=71.41 Aligned_cols=296 Identities=16% Similarity=0.120 Sum_probs=146.4
Q ss_pred cceeeecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~ 84 (362)
++.++++......-..+.+ +|+++++++.||.|.++|+.+.. ...+ +..+. ....+.+++ .+++++
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~-------i~~G~-~~~~i~~s~DG~~~~v~ 95 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVAT-------IKVGG-NPRGIAVSPDGKYVYVA 95 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEE-------EE-SS-EEEEEEE--TTTEEEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEE-------EecCC-CcceEEEcCCCCEEEEE
Confidence 3566777655444333445 47899989999999999987644 1111 11222 234455554 456655
Q ss_pred -ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 85 -HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 85 -~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
...+.+.++|.++.++. ..++..... . .....++..+..+|....++..-.|
T Consensus 96 n~~~~~v~v~D~~tle~v-------~~I~~~~~~-------~-------------~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 96 NYEPGTVSVIDAETLEPV-------KTIPTGGMP-------V-------------DGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEETTEEEEEETTT--EE-------EEEE--EE--------T-------------TTS---EEEEEE-SSSSEEEEEETT
T ss_pred ecCCCceeEeccccccce-------eeccccccc-------c-------------cccCCCceeEEecCCCCEEEEEEcc
Confidence 46899999998765421 111110000 0 0012356677778888866665555
Q ss_pred -CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 164 -RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 164 -~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
+.|-+-|....+.+..-............|.|+++ + ++...++.|-++|..++.....+......|..++..+ .+|
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php 227 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHP 227 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EET
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCC
Confidence 77777787765433221112334567789999997 3 3456677999999877543222211122344444333 233
Q ss_pred CC----------CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEe----eCCCcEEEeeCC
Q 044557 241 DG----------SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSG----SADKTIRIWRGI 304 (362)
Q Consensus 241 ~~----------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~----s~D~~i~~W~~~ 304 (362)
.. ...++.-....+.+||... ...+..++..... ..+..+++ ++... ...++|.++|..
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~----wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYA----WKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTB----TSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred CcceEEeeccccceecccccCCccccchhhc----CeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 22 2222222222333455443 2234445544444 45555544 55444 556899999953
Q ss_pred CCceeeeeEecCCC-CcEEEEEeeecCCccCCCCCceEEEec-CCCCcEEEEecc
Q 044557 305 DRNYTCLAVLEGHR-GPVKCLAAAIDNDRCDSSDTSYLVCSG-SLDCDIKVWQIS 357 (362)
Q Consensus 305 ~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~-s~D~~i~~W~~~ 357 (362)
+.+.+.++.... ..+..+.|+++++. ..+|. ..++.|.++|..
T Consensus 303 --tl~~~~~i~~~~~~~~~h~ef~~dG~~--------v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 303 --TLKVVKTITPGPGKRVVHMEFNPDGKE--------VWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp --GTEEEE-HHHHHT--EEEEEE-TTSSE--------EEEEEE--TTEEEEEETT
T ss_pred --CcceeEEEeccCCCcEeccEECCCCCE--------EEEEEecCCCEEEEEECC
Confidence 345555654222 24888899877653 33444 334479999875
|
... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-07 Score=76.78 Aligned_cols=132 Identities=22% Similarity=0.322 Sum_probs=89.3
Q ss_pred ceeEEEEecCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
.|.+++-+|.. ..+++|++||.+.+||.+.......+...|+.+++.+-|+|.. +|++++.||.+..||..+.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~---- 256 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT---- 256 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc----
Confidence 47778888865 4677788999999999998866666677899999999999865 4999999999999986531
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCc-EEEEEeecCccceeEEEEEeCCeEEEeeCCCcEE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGN-ILVVGALRGHTKSILCMAVVSDLVCSGSADKTIR 299 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~ 299 (362)
. ++++++. ..+..|=--..-.. ..+...+......|.++..-+..+++|+.-+.|+
T Consensus 257 -~-------------l~i~~~~---------s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIy 313 (319)
T KOG4714|consen 257 -F-------------LSISNQA---------SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIY 313 (319)
T ss_pred -e-------------EEecCcc---------ccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEE
Confidence 1 1122221 11222311000011 1122223334456777777788999999989998
Q ss_pred Eee
Q 044557 300 IWR 302 (362)
Q Consensus 300 ~W~ 302 (362)
+.+
T Consensus 314 l~~ 316 (319)
T KOG4714|consen 314 LTR 316 (319)
T ss_pred Eec
Confidence 875
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=89.92 Aligned_cols=284 Identities=15% Similarity=0.174 Sum_probs=154.7
Q ss_pred ccceeeecccCccceeeeEe-c-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe
Q 044557 8 DHHCLTTLKGHNSYVSSLAL-A-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH 85 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~-~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~ 85 (362)
++-.+..+.||+..|+++.. + .+.++++|.|.|||+|.+....-+.... ..+-....|+.++..+-+..+.-..++
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts--aCQfTY~aHkk~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS--ACQFTYQAHKKPIHDIGFLADLRSIAS 801 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc--eeeeEhhhccCcccceeeeeccceeee
Confidence 44566779999999999976 3 5689999999999999986532111110 001111235667777877777666777
Q ss_pred cCCcEEEEecCCCCCC--------cccceeeeeccCCCchhhhhc-cccccceeeee---------eeeEEeeecCceeE
Q 044557 86 QDHKIRVWKINNQEPD--------HQKYTRLATLPTLGDRAIKLL-MPKNHVQIRRH---------KTCTWVHHVDAVSA 147 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~h~~~v~~ 147 (362)
-||-|.+||.-.+.+. +.....+..++.......... .....++..+. +.+...+-...+++
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 8999999996433221 111122222222111111111 11112222222 22211223456899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEE-EeCCCCCCcceeehhh
Q 044557 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKV-WRRSPGNKKHSLVDVL 226 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~i-w~~~~~~~~~~~~~~~ 226 (362)
++..+.|+.++.+=.+|.|.+-|.++++.+..+. ..+.....++-..+..++....|.++.+ |-..++....+.
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~---- 956 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQD---- 956 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeecc----
Confidence 9999999999999999999999999999888775 3333333333333334777778888888 865554321111
Q ss_pred hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec--CccceeEEEEEeC--CeEEEeeCCCcEEE
Q 044557 227 ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR--GHTKSILCMAVVS--DLVCSGSADKTIRI 300 (362)
Q Consensus 227 ~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~h~~~v~~~~~~~--~~~~s~s~D~~i~~ 300 (362)
+..+.+..-+ -.-|.-|+++-..+.+.+|--.........+..++ .-.+..++++.-+ .-+..|.+-|.|.+
T Consensus 957 kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 957 KPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 0011111000 11245566666666677774211100000011111 1123345555533 24566777777765
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=82.21 Aligned_cols=149 Identities=16% Similarity=0.210 Sum_probs=97.7
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCce----EEEeeeccCcccEEEEEEcCCC---cEE-EEeCCCeEEEEeCCCCC
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFK----CLESITNAHDDAINAVALSDDG---DVY-TGSADKKIKVWRRSPGN 217 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~h~~~v~~v~~~~~~---~~~-s~~~dg~i~iw~~~~~~ 217 (362)
..+..++.+++||.+..+....++++.... ++.... -...-+++.|..+. .++ ..+....+.+|....+.
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 344567888889888877776666654322 222111 11112333333222 222 34555667777655432
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCC
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADK 296 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~ 296 (362)
.. .+-+|-.-+..++|+||+++|+++..|..||+-..... ..+..-.-||...|..++..++ .|+|+|.|+
T Consensus 144 ~~-----~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~---f~IesfclGH~eFVS~isl~~~~~LlS~sGD~ 215 (390)
T KOG3914|consen 144 CE-----PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT---FVIESFCLGHKEFVSTISLTDNYLLLSGSGDK 215 (390)
T ss_pred cc-----hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc---cchhhhccccHhheeeeeeccCceeeecCCCC
Confidence 21 23478888999999999999999999999998765421 1222334589999999998766 679999999
Q ss_pred cEEEeeCC
Q 044557 297 TIRIWRGI 304 (362)
Q Consensus 297 ~i~~W~~~ 304 (362)
++++|++.
T Consensus 216 tlr~Wd~~ 223 (390)
T KOG3914|consen 216 TLRLWDIT 223 (390)
T ss_pred cEEEEecc
Confidence 99999964
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-06 Score=78.54 Aligned_cols=111 Identities=19% Similarity=0.121 Sum_probs=72.4
Q ss_pred ceeEEEEecCCCEEE-EEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-CCC--eEEEEeCCCC
Q 044557 144 AVSALALTKDETLLY-SVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS-ADK--KIKVWRRSPG 216 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~-s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg--~i~iw~~~~~ 216 (362)
.+.+++|+||++.|+ +.+.++ .|.+||+.+++... +. .+........|+|+|+ ++..+ .++ .|.++++.++
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 345678999998765 444444 58888988765433 32 2333445678999987 54443 333 5777777654
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCC---cEEEEeccC
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR---SIIVWEKEE 261 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~---~i~~wd~~~ 261 (362)
.. ..+ ..+...+..+.|+|+|++|+.++.++ .|.+||+.+
T Consensus 313 ~~-~~l----~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 313 EV-RRL----TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CE-EEe----ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 32 111 22344567789999999999888776 788888865
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=82.13 Aligned_cols=149 Identities=21% Similarity=0.310 Sum_probs=90.3
Q ss_pred EEEcCCCcEE-EEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc---EEEEeccCCCCcE
Q 044557 191 VALSDDGDVY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS---IIVWEKEEDDGNI 266 (362)
Q Consensus 191 v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~---i~~wd~~~~~~~~ 266 (362)
+..+|+++++ .+..++...+++.....+..++..... -...-+++.|..+......+..-|. +.+|...+..
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~--- 143 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR--- 143 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC---
Confidence 4455666643 344444444555543322122222111 1122344555555555554444444 4444443322
Q ss_pred EEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeE-ecCCCCcEEEEEeeecCCccCCCCCceEEE
Q 044557 267 LVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAV-LEGHRGPVKCLAAAIDNDRCDSSDTSYLVC 343 (362)
Q Consensus 267 ~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~-l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 343 (362)
...+-||..-++.++++++ +++++..|..||+=.... ...+.. ..||+.-|..++..++ +.|+
T Consensus 144 --~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa--~f~IesfclGH~eFVS~isl~~~----------~~Ll 209 (390)
T KOG3914|consen 144 --CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA--TFVIESFCLGHKEFVSTISLTDN----------YLLL 209 (390)
T ss_pred --cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc--ccchhhhccccHhheeeeeeccC----------ceee
Confidence 2235689999999999865 999999999999876422 223443 4599999999988643 4689
Q ss_pred ecCCCCcEEEEecc
Q 044557 344 SGSLDCDIKVWQIS 357 (362)
Q Consensus 344 s~s~D~~i~~W~~~ 357 (362)
|||.|+++|+||+.
T Consensus 210 S~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 210 SGSGDKTLRLWDIT 223 (390)
T ss_pred ecCCCCcEEEEecc
Confidence 99999999999984
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.9e-07 Score=74.62 Aligned_cols=280 Identities=19% Similarity=0.326 Sum_probs=152.7
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCC---cccceeeeccc---eeE-Ee-ecceeEEEEEcCc----eeEE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFS---SELDQEFLSNN---NIV-AV-GKGAVKSLVVLAD----KLFS 83 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~---~~~~~~~~~~~---~~~-~~-~~~~v~~i~~~~~----~l~s 83 (362)
-.+.|++|.|. |.|++||..-|.|-++.-+... .....++.... ..+ +. -...+..|.+..+ .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35678999994 8899999999999999865422 11111121110 000 00 0223444544322 3666
Q ss_pred EecCCcEEEEecCCCCCCcccceee---eeccCCCch--hhhhcccc--ccceeeeeeeeE--EeeecCceeEEEEecCC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRL---ATLPTLGDR--AIKLLMPK--NHVQIRRHKTCT--WVHHVDAVSALALTKDE 154 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~ 154 (362)
.+.|.+|++|.+.......-....+ ...|..+.. ...+..|. ....+...+.+. ...|..-+.+++++.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 6779999999985432110000000 000000000 00001110 001111111111 13477789999999998
Q ss_pred CEEEEEECCCcEEEEECCCce-EEEeee-ccC-----cccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCC---Cccee
Q 044557 155 TLLYSVSWDRTIKIWRTSDFK-CLESIT-NAH-----DDAINAVALSDDGD--VYTGSADKKIKVWRRSPGN---KKHSL 222 (362)
Q Consensus 155 ~~l~s~s~d~~i~iwd~~~~~-~~~~~~-~~h-----~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~---~~~~~ 222 (362)
..++++ .|-+|.+|+++-.. +...+. ++| +..|++..|+|..- +.-.+..|+|++-|+.... ...++
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888765 58999999986432 211111 233 33578888998753 4456788999999986321 00111
Q ss_pred e---------hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCc------------ccee--
Q 044557 223 V---------DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGH------------TKSI-- 279 (362)
Q Consensus 223 ~---------~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h------------~~~v-- 279 (362)
. ..+.+-...|..+.|+++|+++++-+. .+|++||..........+ .-| ...|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi---~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI---PMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee---chHHHHHHHHHhhhhccceee
Confidence 1 112223456788999999999988764 589999988655443322 222 2223
Q ss_pred -EEEEEeCC--eEEEeeCCCcEEEee
Q 044557 280 -LCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 280 -~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
..+.++++ .+.+||.....-++-
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred eEEEEecCCcccccccccccceeeec
Confidence 24556654 677888777777764
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00012 Score=63.04 Aligned_cols=165 Identities=16% Similarity=0.205 Sum_probs=109.6
Q ss_pred eeEEEEecCCCEEEEEEC-CCcEEEEECCCceEEEe--eeccCcccEEEEEEcCCCcEE--EEeCCCeEEEEeCCCCCCc
Q 044557 145 VSALALTKDETLLYSVSW-DRTIKIWRTSDFKCLES--ITNAHDDAINAVALSDDGDVY--TGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~--~~~~h~~~v~~v~~~~~~~~~--s~~~dg~i~iw~~~~~~~~ 219 (362)
+-+..+.|++++|+++.- --+|.+|++.+++.... .........+.|.|+|+++++ ..=-+++|.+|........
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 557789999999988753 24789999987754221 111334457889999999843 4556899999988764221
Q ss_pred ceee---hhhh---ccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEE
Q 044557 220 HSLV---DVLE---RHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVC 290 (362)
Q Consensus 220 ~~~~---~~~~---~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~ 290 (362)
...+ ..+. .-.....+|.++|||++|+++.. ...|-+|.+....+.+..+.....+....+.+.+. +++|+
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 1111 1111 12345678999999999998853 44788898877666666666666666656777665 45655
Q ss_pred Eee-CCCcEEEeeCCCCcee
Q 044557 291 SGS-ADKTIRIWRGIDRNYT 309 (362)
Q Consensus 291 s~s-~D~~i~~W~~~~~~~~ 309 (362)
.+. .+.+|.+|.....++.
T Consensus 307 aa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 307 AANQKSDNITVFERDKETGR 326 (346)
T ss_pred EEccCCCcEEEEEEcCCCce
Confidence 555 4567999976554443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-08 Score=90.69 Aligned_cols=203 Identities=17% Similarity=0.201 Sum_probs=134.3
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCC-ceEEEeeeccCcc--cEEEEEEcCCCc---EEEEeCCCeEEEEeCCC
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSD-FKCLESITNAHDD--AINAVALSDDGD---VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~h~~--~v~~v~~~~~~~---~~s~~~dg~i~iw~~~~ 215 (362)
.+.+..+.++|-|+-+|.++.-|.+. -|+.. +...+-+. |.. .|-.+.|+|... -+......+-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i-~dld~p~~ppr~l~--h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYI-IDLDDPFTPPRWLH--HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEE-EeccCCCCCceeee--ccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 35677888999999888888766554 45543 23322221 222 245566776542 23334444556788764
Q ss_pred CCCcceeehhhhccccceeEEEEecCC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEe
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSG 292 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~ 292 (362)
... ..+.-.+.+|..+|+.+-|.|+. ..+++++.|-.+..||+++..........+. . .-..++|+ ...+...
T Consensus 101 ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--s-~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 101 SSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--S-AASQVKWNYKDPNVLAS 176 (1081)
T ss_pred CCc-cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc--c-cCceeeecccCcchhhh
Confidence 432 23444567899999999999864 5889999999999999998765544333332 2 22344443 2244455
Q ss_pred eCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 293 SADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 293 s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
+-.+.|++|+.. ....++..+++|...|+.++|..... -.+.+.+.|++|+.||.+..+
T Consensus 177 shg~~i~vwd~r-~gs~pl~s~K~~vs~vn~~~fnr~~~--------s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 177 SHGNDIFVWDLR-KGSTPLCSLKGHVSSVNSIDFNRFKY--------SEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred ccCCceEEEecc-CCCcceEEecccceeeehHHHhhhhh--------hhhcccCCCCceeeecccccc
Confidence 666789999953 45567888999999999998853211 136789999999999997665
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-08 Score=58.00 Aligned_cols=36 Identities=47% Similarity=0.980 Sum_probs=33.7
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEee
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWD 45 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd 45 (362)
+++++|++|.+.|.+|++. +.+|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 6889999999999999995 68999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.4e-06 Score=76.75 Aligned_cols=116 Identities=18% Similarity=0.112 Sum_probs=75.4
Q ss_pred eecCceeEEEEecCCCEEEEEECC---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCC--eEEEEe
Q 044557 140 HHVDAVSALALTKDETLLYSVSWD---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADK--KIKVWR 212 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg--~i~iw~ 212 (362)
.+...+....|+|||+.|+..+.+ ..|.+|++.+++... +. ...+.+...+|+|+|+ ++ +...+| .|.+||
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-IT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-cc-CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 345667888999999988776644 368899998876433 22 1223345688999997 44 455555 577888
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CC--cEEEEeccCC
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DR--SIIVWEKEED 262 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~--~i~~wd~~~~ 262 (362)
+.++... . +..+........|+|||+.|+..+. ++ .|.++++..+
T Consensus 274 ~~~~~~~-~----lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 274 LASRQLS-R----VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCCCCeE-E----cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 8765421 1 2234444567789999998775553 44 4666676543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-06 Score=69.66 Aligned_cols=170 Identities=14% Similarity=0.023 Sum_probs=111.1
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEE-EcCC-CcEEEEeCCCeEEEEeCCCCCCcceeehhhhccc
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVA-LSDD-GDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHN 230 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~-~~~~-~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~ 230 (362)
...+||.|+.-|.+.+|...+.+..-.+...|...|+-+. .+.. -.+..++.|.++++.+++-+..... .|.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~------~h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA------VHN 156 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce------eec
Confidence 3457999999999999998876543333333333332222 1111 2377889999999999876543322 233
Q ss_pred c--ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCC
Q 044557 231 S--GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDR 306 (362)
Q Consensus 231 ~--~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~ 306 (362)
. .++++++++|++++++.+....|-.|.+......... .....-.+.-.+..|+. ..+|+++.||++-|||+..-
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 3 3788999999999999999999999998754332221 12222233345666653 48999999999999996421
Q ss_pred ceeee----eEecCCCCcEEEEEeeecC
Q 044557 307 NYTCL----AVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 307 ~~~~~----~~l~~h~~~v~~~~~~~~~ 330 (362)
..+. .+--.|.+++..+.|++.+
T Consensus 236 -~tpm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 236 -ATPMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred -ccchhhhcccCCCCCCceEEEEecCCC
Confidence 1111 1223489999999998753
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.4e-06 Score=67.56 Aligned_cols=190 Identities=16% Similarity=0.123 Sum_probs=122.3
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeeccee---EEEEEcCceeEEEecCCcEEEEecCCCCCCcccce
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV---KSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYT 106 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v---~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 106 (362)
.+||.||.-|...+|...+.+..+.. ...+...| .......-.+..++-|.++++.++.......
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~--------cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---- 152 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQ--------CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---- 152 (344)
T ss_pred cEEEeccccceeeeecccCcccceee--------ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc----
Confidence 48999999999999998754322110 00111111 1222233357888999999999876432110
Q ss_pred eeeeccCCCchhhhhccccccceeeeeeeeEEeeecC--ceeEEEEecCCCEEEEEECCCcEEEEECCCce--EEEeeec
Q 044557 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD--AVSALALTKDETLLYSVSWDRTIKIWRTSDFK--CLESITN 182 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~ 182 (362)
.-|.. .+.++++++|++++++.+.-..|..|.+.... .++....
T Consensus 153 --------------------------------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a 200 (344)
T KOG4532|consen 153 --------------------------------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA 200 (344)
T ss_pred --------------------------------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec
Confidence 11222 26788999999999999999999999886532 2332222
Q ss_pred cCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcce-eehhhhccccceeEEEEecCCC--EEEEEcCCCcEEEEe
Q 044557 183 AHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHS-LVDVLERHNSGINALALSCDGS--VLYSGACDRSIIVWE 258 (362)
Q Consensus 183 ~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~-~~~~~~~h~~~v~~i~~s~~~~--~l~s~~~d~~i~~wd 258 (362)
.-++.=.+..|+.... ++++..||++.|||+........ .......|++.+..+.|++-|. +|+..-.=+.+.+-|
T Consensus 201 ~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 201 PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 3334446677886654 89999999999999986542211 2223345889999999998553 444444456788888
Q ss_pred ccCCC
Q 044557 259 KEEDD 263 (362)
Q Consensus 259 ~~~~~ 263 (362)
+++..
T Consensus 281 ~R~~~ 285 (344)
T KOG4532|consen 281 TRNYV 285 (344)
T ss_pred cccCc
Confidence 87654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-06 Score=77.99 Aligned_cols=149 Identities=17% Similarity=0.113 Sum_probs=85.3
Q ss_pred cCceeEEEEecCCCEEEEEECC-C--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCCe--EEEEeCC
Q 044557 142 VDAVSALALTKDETLLYSVSWD-R--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADKK--IKVWRRS 214 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg~--i~iw~~~ 214 (362)
...+.+..|+|||+.|+..+.+ + .|.+||+.+++... +. .........+|+|+|+ ++ +.+.+|. |.++|+.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 4466788999999988776543 3 58888988765422 21 1122334678999997 54 4566675 6667776
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CCc--EEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeE
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DRS--IIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLV 289 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~--i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~ 289 (362)
++... .+..+.......+|+|||+.|+..+. ++. |.++|+.+++ ...+. ..++. ....++++ +.+
T Consensus 295 tg~~~-----~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt-~~g~~--~~~~~~SpDG~~l 364 (448)
T PRK04792 295 TKALT-----RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLT-FEGEQ--NLGGSITPDGRSM 364 (448)
T ss_pred CCCeE-----ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEe-cCCCC--CcCeeECCCCCEE
Confidence 65321 12234445667899999998875543 444 5555665432 22221 22222 22334554 444
Q ss_pred E-EeeCCCcEEEee
Q 044557 290 C-SGSADKTIRIWR 302 (362)
Q Consensus 290 ~-s~s~D~~i~~W~ 302 (362)
+ +...++..++|.
T Consensus 365 ~~~~~~~g~~~I~~ 378 (448)
T PRK04792 365 IMVNRTNGKFNIAR 378 (448)
T ss_pred EEEEecCCceEEEE
Confidence 4 344455566653
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.6e-08 Score=82.42 Aligned_cols=143 Identities=16% Similarity=0.294 Sum_probs=104.6
Q ss_pred EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC-CcEEEEEeecCccc
Q 044557 199 VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD-GNILVVGALRGHTK 277 (362)
Q Consensus 199 ~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~h~~ 277 (362)
-++.+.+-.|-+-+++++... .+ ...+.|.++.|...+..++.|...|.|..+|++... ++.... ..-.|..
T Consensus 227 hfs~G~sqqv~L~nvetg~~q-sf-----~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-~rlyh~S 299 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQ-SF-----QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-QRLYHDS 299 (425)
T ss_pred eecccccceeEEEEeeccccc-cc-----ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-EEEEcCc
Confidence 356777888889999887432 22 146678889999889999999999999999998641 111111 1224777
Q ss_pred eeEEEE---EeCCeEEEeeCCCcEEEeeCCCCceee---eeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcE
Q 044557 278 SILCMA---VVSDLVCSGSADKTIRIWRGIDRNYTC---LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351 (362)
Q Consensus 278 ~v~~~~---~~~~~~~s~s~D~~i~~W~~~~~~~~~---~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i 351 (362)
.|+|+. ++..++.+.+.+|.|++||.. ..++ +.+++||.+.-.-+.+.-+. ....|+++++|+-.
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R--~~K~~~~V~qYeGHvN~~a~l~~~v~~-------eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLR--ATKCKKSVMQYEGHVNLSAYLPAHVKE-------EEGSIFSVGDDCYT 370 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeeh--hhhcccceeeeeccccccccccccccc-------ccceEEEccCeeEE
Confidence 787764 566789999999999999953 3444 88899998766666555432 22468889999999
Q ss_pred EEEecc
Q 044557 352 KVWQIS 357 (362)
Q Consensus 352 ~~W~~~ 357 (362)
|||.+.
T Consensus 371 RiWsl~ 376 (425)
T KOG2695|consen 371 RIWSLD 376 (425)
T ss_pred EEEecc
Confidence 999985
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.3e-08 Score=57.24 Aligned_cols=38 Identities=32% Similarity=0.678 Sum_probs=34.1
Q ss_pred eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 309 TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 309 ~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+++.++.+|.+.|++++|+|++ .+|+|||.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~---------~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG---------NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS---------SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc---------ccceeeCCCCEEEEEC
Confidence 5788999999999999998763 4699999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.8e-07 Score=75.37 Aligned_cols=157 Identities=13% Similarity=0.179 Sum_probs=97.4
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCCce-EEEeeeccCcccEEEEEEcCCCcEEEEeCCCe------EEEEe
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-CLESITNAHDDAINAVALSDDGDVYTGSADKK------IKVWR 212 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~------i~iw~ 212 (362)
.|++.-.+-+.+-.++.++++..||.+.+.+.+... ....+...|.+. -+.++...+.++..+.-|+ .+.|+
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANT 165 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeec
Confidence 344433333444456779999999999999876521 111111112111 1223333455555444444 44555
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCe
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDL 288 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~ 288 (362)
++... .+..... ....|++++-+|. .+.+++|+.||.+.+||.+... .....++.|...+..+-|. |+.
T Consensus 166 ~~p~~---t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 166 LDPIK---TLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ccccc---ccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCCchh
Confidence 54322 2222111 1234889998885 4567788899999999998642 2455678899999999986 458
Q ss_pred EEEeeCCCcEEEeeCC
Q 044557 289 VCSGSADKTIRIWRGI 304 (362)
Q Consensus 289 ~~s~s~D~~i~~W~~~ 304 (362)
|.++|+||.+-.||..
T Consensus 239 Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAS 254 (319)
T ss_pred eeEecCCCcEEEEcCC
Confidence 9999999999999864
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-05 Score=70.19 Aligned_cols=264 Identities=13% Similarity=0.087 Sum_probs=144.4
Q ss_pred EecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccc
Q 044557 26 ALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 26 ~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
...++.++.++.++.+.-+|..+....+...... .....+...++.++.++.++.+..+|.++++...+.
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~---------~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~- 131 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDE---------RLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRA- 131 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCC---------CcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeee-
Confidence 3457788889999999999977654322211111 111223345677889999999999998765521100
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCc
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~ 185 (362)
.. .+.+.+.... .+..++.++.++.|..||.++++.+-..... .
T Consensus 132 ----~~------------------------------~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~ 175 (377)
T TIGR03300 132 ----KL------------------------------SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRV-T 175 (377)
T ss_pred ----cc------------------------------CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccC-C
Confidence 00 0001100001 2345666778999999999988866544321 1
Q ss_pred ccE-----EEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehh-hhccc--c---ce-eEEEEecCCCEEEEEcCCCc
Q 044557 186 DAI-----NAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV-LERHN--S---GI-NALALSCDGSVLYSGACDRS 253 (362)
Q Consensus 186 ~~v-----~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~h~--~---~v-~~i~~s~~~~~l~s~~~d~~ 253 (362)
... .+..+ .++.++.+..+|.+..+|..++....+.... ..... . .+ ....+ .+..++.++.++.
T Consensus 176 ~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~ 252 (377)
T TIGR03300 176 PALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGR 252 (377)
T ss_pred CceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCE
Confidence 111 01111 2356778888899999998887533221100 00000 0 00 01111 3568888889999
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc-EEEEEeeecCCc
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP-VKCLAAAIDNDR 332 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~-v~~~~~~~~~~~ 332 (362)
++.||..+++.. . ... ..........++.+..++.||.+..++... ++.+.....-... ......
T Consensus 253 l~a~d~~tG~~~-W---~~~--~~~~~~p~~~~~~vyv~~~~G~l~~~d~~t--G~~~W~~~~~~~~~~ssp~i------ 318 (377)
T TIGR03300 253 VAALDLRSGRVL-W---KRD--ASSYQGPAVDDNRLYVTDADGVVVALDRRS--GSELWKNDELKYRQLTAPAV------ 318 (377)
T ss_pred EEEEECCCCcEE-E---eec--cCCccCceEeCCEEEEECCCCeEEEEECCC--CcEEEccccccCCccccCEE------
Confidence 999999765321 1 111 111223345567888888999999998532 2333222111111 111111
Q ss_pred cCCCCCceEEEecCCCCcEEEEecc
Q 044557 333 CDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 333 ~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+..|+.++.||.|.++|..
T Consensus 319 -----~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 319 -----VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred -----ECCEEEEEeCCCEEEEEECC
Confidence 11246778889999998864
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=85.16 Aligned_cols=169 Identities=19% Similarity=0.309 Sum_probs=112.2
Q ss_pred eeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC-------ceEEEeeeccCcccEEEEEEcCCCcEEEEe
Q 044557 131 RRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD-------FKCLESITNAHDDAINAVALSDDGDVYTGS 203 (362)
Q Consensus 131 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-------~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~ 203 (362)
...+.+.+.+|+..|+.++.-.+.+-+++++.|++|++|.++. ..|.-+++ .|..+|.++.|-.+.+. .++
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~-i~S 801 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRS-IAS 801 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccce-eee
Confidence 3345677789999999988777888899999999999998764 12444454 79999999998877652 235
Q ss_pred CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec--CCCEEEEE-cCCCcEEEEeccCCCCc-EEEEEeecCcccee
Q 044557 204 ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC--DGSVLYSG-ACDRSIIVWEKEEDDGN-ILVVGALRGHTKSI 279 (362)
Q Consensus 204 ~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~-~~d~~i~~wd~~~~~~~-~~~~~~~~~h~~~v 279 (362)
.||-|.+||.--+......... ..| +.+..+..-| +...++.| +...+|+++|.+..+-. ...+..-.+....+
T Consensus 802 cD~giHlWDPFigr~Laq~~da-pk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDA-PKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred ccCcceeecccccchhHhhhcC-ccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 6889999997655432222111 112 2333343333 44455444 67889999998864321 11222224444556
Q ss_pred EEEEE--eCCeEEEeeCCCcEEEeeC
Q 044557 280 LCMAV--VSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 280 ~~~~~--~~~~~~s~s~D~~i~~W~~ 303 (362)
+++++ .++.++.+-..|+|-+-|.
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEec
Confidence 77776 4568888888999998884
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.5e-07 Score=74.17 Aligned_cols=203 Identities=20% Similarity=0.332 Sum_probs=130.0
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCce-E----EEeeeccC------------cccEEEEEEcCC-Cc--EEE
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-C----LESITNAH------------DDAINAVALSDD-GD--VYT 201 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~----~~~~~~~h------------~~~v~~v~~~~~-~~--~~s 201 (362)
.+.|+++.|...|.+|++|...|+|.++.-+... | ...++ .| ...|..+.|..+ ++ ++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4568999999999999999888999999754322 1 11122 22 234778888754 43 788
Q ss_pred EeCCCeEEEEeCCCCC-------------------Ccce---e-eh----------------hhhccccceeEEEEecCC
Q 044557 202 GSADKKIKVWRRSPGN-------------------KKHS---L-VD----------------VLERHNSGINALALSCDG 242 (362)
Q Consensus 202 ~~~dg~i~iw~~~~~~-------------------~~~~---~-~~----------------~~~~h~~~v~~i~~s~~~ 242 (362)
.+.|++|++|.+.... +..+ + .. ....|..-+++++|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8999999999865431 0000 0 00 013467778899999888
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc-----ceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCc-----ee
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT-----KSILCMAVVSD---LVCSGSADKTIRIWRGIDRN-----YT 309 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~-----~~ 309 (362)
..++++. |-.|.+|.++-..+...++. ++-|. .-|++-.|.+. .+.=.|..|.|++-|+.+.. .+
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVD-iKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVD-IKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEe-ccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 8888764 77899999887666554432 33333 23566667654 45556667999999864211 00
Q ss_pred ---------eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 310 ---------CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 310 ---------~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
...-+.+-.+.|.++.|+++ +++|+|-+. -+++|||+.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~n---------gryIlsRdy-ltvkiwDvn 309 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDN---------GRYILSRDY-LTVKIWDVN 309 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCC---------CcEEEEecc-ceEEEEecc
Confidence 01113344557788888654 456766544 579999984
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00029 Score=60.87 Aligned_cols=276 Identities=11% Similarity=0.164 Sum_probs=147.3
Q ss_pred CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC---CcEEEEecCCCCCCcccceeeeecc
Q 044557 38 DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD---HKIRVWKINNQEPDHQKYTRLATLP 112 (362)
Q Consensus 38 Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~ 112 (362)
.+-|.+|++.+..+.+.... +....+..+-|.+.++ .|+++..+ |.|-.|.++...... +.+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~------~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L---t~ln~~~ 85 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ------LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL---TFLNRQT 85 (346)
T ss_pred CCceEEEEEeCcccccchhh------hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE---EEeeccc
Confidence 57799999886443321110 0112334455566554 38887554 667777776432100 0000000
Q ss_pred CCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC-CCcEEEEECCC-ceEEEee-eccCccc--
Q 044557 113 TLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW-DRTIKIWRTSD-FKCLESI-TNAHDDA-- 187 (362)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-d~~i~iwd~~~-~~~~~~~-~~~h~~~-- 187 (362)
.-..+..-+++++++++|+++.- -|.|.++-++. +...... ...|.+.
T Consensus 86 ---------------------------~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p 138 (346)
T COG2706 86 ---------------------------LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP 138 (346)
T ss_pred ---------------------------cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCC
Confidence 00112366889999999998864 47899998865 3322110 1124444
Q ss_pred --------EEEEEEcCCCcEEEE---eCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc-CCCcEE
Q 044557 188 --------INAVALSDDGDVYTG---SADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRSII 255 (362)
Q Consensus 188 --------v~~v~~~~~~~~~s~---~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~ 255 (362)
+.+..+.|+++++.+ +.| .|.+|+++.+.....-...+ ....+-.-|.|+|++++.+... .+++|.
T Consensus 139 ~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~ 216 (346)
T COG2706 139 HERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVD 216 (346)
T ss_pred CccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEE
Confidence 778889999984433 234 68899998664322211112 2345678899999999887665 589999
Q ss_pred EEeccCCCCcEEEEEee---cC---ccceeEEEEEeCC--eE-EEeeCCCcEEEeeCCCCcee--eeeEecCCCCcEEEE
Q 044557 256 VWEKEEDDGNILVVGAL---RG---HTKSILCMAVVSD--LV-CSGSADKTIRIWRGIDRNYT--CLAVLEGHRGPVKCL 324 (362)
Q Consensus 256 ~wd~~~~~~~~~~~~~~---~~---h~~~v~~~~~~~~--~~-~s~s~D~~i~~W~~~~~~~~--~~~~l~~h~~~v~~~ 324 (362)
+|......+++..+..+ +. -......+..+++ +| ++--....|-++.+....++ .+....-+...-...
T Consensus 217 v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F 296 (346)
T COG2706 217 VLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF 296 (346)
T ss_pred EEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc
Confidence 99987643333222221 11 0122344555443 43 33333446777765433222 122211122222222
Q ss_pred EeeecCCccCCCCCceEEEecCC-CCcEEEEecccCc
Q 044557 325 AAAIDNDRCDSSDTSYLVCSGSL-DCDIKVWQISFPL 360 (362)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~s~s~-D~~i~~W~~~~~~ 360 (362)
.| ++++.+|+.+.. +.+|.++..+..|
T Consensus 297 ~i---------~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 297 NI---------NPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ee---------CCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 22 233444555544 4459999886544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.1e-05 Score=77.70 Aligned_cols=203 Identities=15% Similarity=0.163 Sum_probs=120.0
Q ss_pred ceeEEEEecCCCEEEEEE-CCCcEEEEECCCceEEEeeecc-C---------------cccEEEEEEcC-CCc-EEEEeC
Q 044557 144 AVSALALTKDETLLYSVS-WDRTIKIWRTSDFKCLESITNA-H---------------DDAINAVALSD-DGD-VYTGSA 204 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~-h---------------~~~v~~v~~~~-~~~-~~s~~~ 204 (362)
....++++++++.|+.+. .++.|+++|..++.. .++... . -.....++++| ++. +++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 457889999888666654 557899999877643 222100 0 01235789998 555 456677
Q ss_pred CCeEEEEeCCCCCCcceeeh-----hhhc------cccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEe-
Q 044557 205 DKKIKVWRRSPGNKKHSLVD-----VLER------HNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGA- 271 (362)
Q Consensus 205 dg~i~iw~~~~~~~~~~~~~-----~~~~------h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~- 271 (362)
++.|++||..++... .+.. ...+ .-.....|+++|++..|+ +-+.++.|++||+.++... ...+.
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGD 781 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecc
Confidence 889999998765311 1100 0000 112346799999998555 5556789999998754321 11110
Q ss_pred ---------ec---C-----ccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeE-----------ecCCCCcE
Q 044557 272 ---------LR---G-----HTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAV-----------LEGHRGPV 321 (362)
Q Consensus 272 ---------~~---~-----h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~-----------l~~h~~~v 321 (362)
+. + .......+++++ +++++-+.++.|++|+........+.. ..++-...
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 00 0 011224566654 478888999999999954322111110 11122345
Q ss_pred EEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 322 KCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..++++++ +.++++-+.+++|++||+..
T Consensus 862 ~GIavd~d---------G~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 862 AGLALGEN---------GRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eEEEEeCC---------CCEEEEECCCCEEEEEECCC
Confidence 66777544 34677778899999999864
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00029 Score=71.10 Aligned_cols=312 Identities=13% Similarity=0.151 Sum_probs=161.0
Q ss_pred CccceeeeEe--cCcEEEEecCCCeEEEe----ecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eEEEecCCc
Q 044557 18 HNSYVSSLAL--AGKFLYTGSSDNEVRSW----DCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LFSAHQDHK 89 (362)
Q Consensus 18 H~~~V~~l~~--~~~~l~t~s~Dg~i~vW----d~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~s~~~dg~ 89 (362)
..+.|.++.+ ....++.+..+|.|-+. +..... .+ ++-.-...+.++.+++|. |+.++.+++
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----~E------~VG~vd~GI~a~~WSPD~Ella~vT~~~~ 143 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE----IE------IVGSVDSGILAASWSPDEELLALVTGEGN 143 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce----eE------EEEEEcCcEEEEEECCCcCEEEEEeCCCE
Confidence 3467777777 35567777888999888 433221 11 111224678899998875 666666777
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhcccccccee------------eeee-----eeEEeeecCceeEEEEec
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQI------------RRHK-----TCTWVHHVDAVSALALTK 152 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~-----~~~~~~h~~~v~~~~~~~ 152 (362)
+-+-.-+ .++..+. .+.....+....+...-+....|. +... ..... +.+.-..++|-.
T Consensus 144 l~~mt~~-fd~i~E~--~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG 219 (928)
T PF04762_consen 144 LLLMTRD-FDPISEV--PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG 219 (928)
T ss_pred EEEEecc-ceEEEEe--ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC
Confidence 6664321 1110000 000000000000000000000000 0000 00111 344567889999
Q ss_pred CCCEEEEEEC---C---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeC----CCeEEEEeCCCCCCccee
Q 044557 153 DETLLYSVSW---D---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSA----DKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 153 ~~~~l~s~s~---d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~----dg~i~iw~~~~~~~~~~~ 222 (362)
||.+||+.+- . +.||||+-+ +..... ...-.+--.+++|.|.|.++++.. ...|.+|... |.....+
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st-SE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF 296 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE-GELQST-SEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEF 296 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC-ceEEec-cccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeE
Confidence 9999998874 2 579999865 443222 112222234689999999665543 2467777543 3222222
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCC---eEEEeeCCCcE
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSD---LVCSGSADKTI 298 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~---~~~s~s~D~~i 298 (362)
.-........|..+.|++|+..|+.--.|. |.+|-..+.. +.+-..+.. ....+..+.|+++ .+...+.++.+
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH--WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH--WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY 373 (928)
T ss_pred ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE--EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence 111223456789999999999999977665 9999876432 211112221 1222334666543 45445554555
Q ss_pred EEeeCC-----CC-----ceeeeeEec-----------------------CCCCcEEEEEeeecCCccCCCCCceEEEec
Q 044557 299 RIWRGI-----DR-----NYTCLAVLE-----------------------GHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345 (362)
Q Consensus 299 ~~W~~~-----~~-----~~~~~~~l~-----------------------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 345 (362)
..++.. .. ....+..+. .-...|.+++|+++.. .++.-
T Consensus 374 ~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~---------~~avl 444 (928)
T PF04762_consen 374 EIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS---------RFAVL 444 (928)
T ss_pred EEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC---------eEEEE
Confidence 444310 00 000111111 1345788888876542 15666
Q ss_pred CCCCcEEEEeccc
Q 044557 346 SLDCDIKVWQISF 358 (362)
Q Consensus 346 s~D~~i~~W~~~~ 358 (362)
..||+|.+|+...
T Consensus 445 ~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 445 TSDGSLSIYEWDL 457 (928)
T ss_pred ECCCCEEEEEecC
Confidence 7799999998643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-05 Score=63.52 Aligned_cols=187 Identities=16% Similarity=0.229 Sum_probs=111.6
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc------CcccEEEEEEcCCC-------cEEEEeCCCeEEEE
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA------HDDAINAVALSDDG-------DVYTGSADKKIKVW 211 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~------h~~~v~~v~~~~~~-------~~~s~~~dg~i~iw 211 (362)
-+-++|+||+.+||.+...|+|+++|+...... .+... -..+|-.+.|.+-. .++.-..+|.++=|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 356889999999999999999999998764332 22111 23467777775322 47788889888888
Q ss_pred eCCCCC-Ccceeeh--hh-hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--
Q 044557 212 RRSPGN-KKHSLVD--VL-ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-- 285 (362)
Q Consensus 212 ~~~~~~-~~~~~~~--~~-~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-- 285 (362)
-+..+. ....... .+ ..+..+|+++.++|.-+.|+.||.... + .+ .-++....+.++..-
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~--~~------~s~a~~~GLtaWRiL~~ 190 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------Q--DG------MSKASSCGLTAWRILSD 190 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------C--Cc------cccccccCceEEEEcCC
Confidence 764321 1111111 11 224678999999999888888875432 0 00 001223334555442
Q ss_pred -CCe-EEEeeCCCcE------EEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 286 -SDL-VCSGSADKTI------RIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 286 -~~~-~~s~s~D~~i------~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|-+ .++.++|+.. -+|+... .........-.+.|..+..+|++ .+||+...+|.|-+|+++
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPdg---------~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPDG---------SLLACIHFSGSLSLWEIP 259 (282)
T ss_pred CCcEEEccccCccccccccccceeeccc--eeeeeccccCCCceEEEEECCCC---------CEEEEEEcCCeEEEEecC
Confidence 222 2333333322 2333211 11111112356789999998775 469999999999999984
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00022 Score=63.45 Aligned_cols=107 Identities=19% Similarity=0.269 Sum_probs=70.0
Q ss_pred Eec-CCCEEEEEECCCcEEEEECCCc-----eEEEeeecc------CcccEEEEEEcCCCc-EEEEe----------CCC
Q 044557 150 LTK-DETLLYSVSWDRTIKIWRTSDF-----KCLESITNA------HDDAINAVALSDDGD-VYTGS----------ADK 206 (362)
Q Consensus 150 ~~~-~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~~------h~~~v~~v~~~~~~~-~~s~~----------~dg 206 (362)
|.+ ++++++...+ |+|.+-|+... +.+..+..+ ..+...-++++|++. ++... ..+
T Consensus 201 ~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 201 YSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred eEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 344 8888877766 99999996442 222222111 112234489998875 54421 225
Q ss_pred eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC-EEEEEc-CCCcEEEEeccCC
Q 044557 207 KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGA-CDRSIIVWEKEED 262 (362)
Q Consensus 207 ~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-~d~~i~~wd~~~~ 262 (362)
.|.++|..+.+....+. -...+..++++||++ +|++.. .++.|.++|..+.
T Consensus 280 ~V~ViD~~t~kvi~~i~-----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIE-----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEEEECCCCeEEEEEe-----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 89999988765433321 134688999999999 888666 6888999998764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00013 Score=67.63 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=82.2
Q ss_pred eEEEEecCCCEEEEEEC-----CCcEEEEECCCc--eEEEeeeccCcccEEEEEEcCCCc-EEE-EeCCCeEEEEeC--C
Q 044557 146 SALALTKDETLLYSVSW-----DRTIKIWRTSDF--KCLESITNAHDDAINAVALSDDGD-VYT-GSADKKIKVWRR--S 214 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~-----d~~i~iwd~~~~--~~~~~~~~~h~~~v~~v~~~~~~~-~~s-~~~dg~i~iw~~--~ 214 (362)
...+|+|||+.|+..+. |-.+.+|++..+ .....+...+.......+|+|+|+ ++. ...+|...+|.+ .
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 45689999988776553 223455776542 112223322223345678999997 554 345676666643 2
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC---CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eE
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD---RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LV 289 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~ 289 (362)
....... .+..+...+....|+|||+.|+..+.+ ..|.+||+..++. ..+ ......+....|+++ .+
T Consensus 314 ~~g~~~~---~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~L---t~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 314 PEGQSPR---LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQL---TTSPENKESPSWAIDSLHL 385 (428)
T ss_pred ccccceE---EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEc---cCCCCCccceEECCCCCEE
Confidence 2111111 122233456788999999988866543 3688999876432 222 212223445666654 44
Q ss_pred E-EeeCC--CcEEEeeCC
Q 044557 290 C-SGSAD--KTIRIWRGI 304 (362)
Q Consensus 290 ~-s~s~D--~~i~~W~~~ 304 (362)
+ ++..+ ..|.+|+..
T Consensus 386 ~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 386 VYSAGNSNESELYLISLI 403 (428)
T ss_pred EEEECCCCCceEEEEECC
Confidence 3 43333 446666653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.4e-05 Score=69.28 Aligned_cols=195 Identities=15% Similarity=0.047 Sum_probs=102.1
Q ss_pred ceeEEEEecCCCE---EEEEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEE-EeC----CCeEEEEe
Q 044557 144 AVSALALTKDETL---LYSVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYT-GSA----DKKIKVWR 212 (362)
Q Consensus 144 ~v~~~~~~~~~~~---l~s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s-~~~----dg~i~iw~ 212 (362)
...+=.|+|||+. +++...++ .|.+.++.+++..+ +. .........+|+|||+ ++. ... |..+.+|+
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-IL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-ee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 3445589999974 33444444 46777887765433 22 1233344678999996 443 322 32344467
Q ss_pred CCCCC--CcceeehhhhccccceeEEEEecCCCEEEEEc-CCCcEEEEec--cCCCCcEEEEEeecCccceeEEEEEeCC
Q 044557 213 RSPGN--KKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEK--EEDDGNILVVGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 213 ~~~~~--~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~--~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (362)
+..+. ....+. ..+.......+|+|||+.|+..+ .+|...+|.+ ........ .+..+...+....|+++
T Consensus 264 ~~~g~~g~~~~lt---~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~---~lt~~~~~~~~p~wSPD 337 (428)
T PRK01029 264 LETGAIGKPRRLL---NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR---LLTKKYRNSSCPAWSPD 337 (428)
T ss_pred cccCCCCcceEee---cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE---EeccCCCCccceeECCC
Confidence 65431 111121 11222345689999999877655 5676556643 22112121 22233344556667654
Q ss_pred --eEEEeeC-C--CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCC--CCcEEEEecc
Q 044557 288 --LVCSGSA-D--KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL--DCDIKVWQIS 357 (362)
Q Consensus 288 --~~~s~s~-D--~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~--D~~i~~W~~~ 357 (362)
.++..+. + ..|.+|+...... ..+......+....|+|++. .+++++.. +..|.+|++.
T Consensus 338 G~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~~~p~wSpDG~--------~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 338 GKKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENKESPSWAIDSL--------HLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCccceEECCCCC--------EEEEEECCCCCceEEEEECC
Confidence 5554433 2 3588888644332 23332233456677776543 34444433 3457777764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00012 Score=68.36 Aligned_cols=109 Identities=19% Similarity=0.126 Sum_probs=65.2
Q ss_pred eEEEEecCCCEEEE-EECCCc--EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCCe--EEEEeCCCCCC
Q 044557 146 SALALTKDETLLYS-VSWDRT--IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADKK--IKVWRRSPGNK 218 (362)
Q Consensus 146 ~~~~~~~~~~~l~s-~s~d~~--i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg~--i~iw~~~~~~~ 218 (362)
...+|+||++.|+. .+.++. |.++|+.+++..+ +. .+.......+|+|+|+ ++ +...++. |.++|+.++..
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-IT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 35689999997764 566665 7777887765433 33 2344556788999997 43 3434444 55566665532
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcC-CCc--EEEEeccC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGAC-DRS--IIVWEKEE 261 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~--i~~wd~~~ 261 (362)
..+. .. .......+|+|||++|+..+. ++. |.++|+.+
T Consensus 343 -~~Lt--~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 343 -SRLT--FE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred -EEEe--cC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC
Confidence 1221 11 122334689999999877655 343 44456554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00061 Score=70.00 Aligned_cols=158 Identities=12% Similarity=0.103 Sum_probs=100.1
Q ss_pred eeEEEEec-CCCEEEEEECCCcEEEEECCCceEEEeee--------cc------CcccEEEEEEcCCCc-E-EEEeCCCe
Q 044557 145 VSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESIT--------NA------HDDAINAVALSDDGD-V-YTGSADKK 207 (362)
Q Consensus 145 v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--------~~------h~~~v~~v~~~~~~~-~-~s~~~dg~ 207 (362)
...++++| ++.++++.+.++.|++||..++.... +. .+ .-.....++++|++. + ++...++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 35789999 56667777888999999988765421 11 00 012346799999886 4 45567799
Q ss_pred EEEEeCCCCCCccee---------ehhhhc--------cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEE
Q 044557 208 IKVWRRSPGNKKHSL---------VDVLER--------HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVG 270 (362)
Q Consensus 208 i~iw~~~~~~~~~~~---------~~~~~~--------h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 270 (362)
|++||+.++...... ...+.. .-.....++++++|..+++-..+++|++||..+.. ...+.
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~--v~tia 841 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR--VTTLA 841 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe--EEEEe
Confidence 999998765321000 000000 01123578999999988888999999999986532 11111
Q ss_pred e-----------ecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCC
Q 044557 271 A-----------LRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 271 ~-----------~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~ 305 (362)
. ..+.......+++++ .++++-+.++.|++|+...
T Consensus 842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 842 GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 1 011122345667654 4788888999999999644
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.8e-05 Score=69.04 Aligned_cols=269 Identities=14% Similarity=0.161 Sum_probs=153.4
Q ss_pred ccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceee------eccceeEEeecceeEEEEEcCc--eeEEEecCC
Q 044557 19 NSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEF------LSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDH 88 (362)
Q Consensus 19 ~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~------~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg 88 (362)
+....++.|. ..|++.||.||.+|+-.+.+........- ..-.+.+-.|.+.|.-+.++.+ +|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3455788884 67999999999999999876543221110 0011223445667776667643 588888999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
.|-+|-+-.+.-... +.+ ......|.+++|+.||..++..-+||.|.+
T Consensus 94 lIiVWmlykgsW~EE------------------MiN--------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEE------------------MIN--------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred eEEEEeeecccHHHH------------------Hhh--------------CcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 999997754321000 000 013456889999999999999999999988
Q ss_pred EECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee--------ehhhhccccceeEEEEe
Q 044557 169 WRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL--------VDVLERHNSGINALALS 239 (362)
Q Consensus 169 wd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~--------~~~~~~h~~~v~~i~~s 239 (362)
=.++..+...+-.++ .-...+.|++|.+ ++.+-.+|.+.+||.+..- ..++ ...+......+..+.|.
T Consensus 142 GsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF-~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNF-ERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred Eeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccH-HHhhhhceEEeeeeeecCCCccccceeec
Confidence 777665443321111 1223577999987 5667788999999865321 1011 00011112224444442
Q ss_pred --------cCCCEEEEEcCCCcEEEEeccCCCCcE------EEEEeecCccceeEEEEEeCCeEEEeeCC-CcEEEeeCC
Q 044557 240 --------CDGSVLYSGACDRSIIVWEKEEDDGNI------LVVGALRGHTKSILCMAVVSDLVCSGSAD-KTIRIWRGI 304 (362)
Q Consensus 240 --------~~~~~l~s~~~d~~i~~wd~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~s~s~D-~~i~~W~~~ 304 (362)
||...|+.+-..|.+.+-.-++...+. ..++....|.+.|++++-... -+-.-.| +.|.++...
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~-da~~~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS-DADEPTDSNKVHFYSPY 297 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcc-cccCccccceEEEeccc
Confidence 588899999988888766544332221 122222234444443332110 0001122 356666532
Q ss_pred CCceeeeeEecCCCCcEEEEEe
Q 044557 305 DRNYTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 305 ~~~~~~~~~l~~h~~~v~~~~~ 326 (362)
+.-+.+|+--...|++++|
T Consensus 298 ---G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 298 ---GHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred ---hhheEEEecCCceeeeeEE
Confidence 2334555555667777766
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0011 Score=66.99 Aligned_cols=181 Identities=17% Similarity=0.280 Sum_probs=108.3
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEee------------------------------------ec---
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI------------------------------------TN--- 182 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------------------------------------~~--- 182 (362)
...|.+++||||+..|+..+.++++.+-.. ++..+... ..
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 457999999999999999999998887642 22111100 00
Q ss_pred c--------CcccEEEEEEcCCCcEEEE-e---C-C--CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE
Q 044557 183 A--------HDDAINAVALSDDGDVYTG-S---A-D--KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 183 ~--------h~~~v~~v~~~~~~~~~s~-~---~-d--g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 247 (362)
. +.+.-..++|-.||.+++. + . . +.+|||+.+ |. +..+.+.-.+--.+++|.|.|+.||+
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~----L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE----LQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce----EEeccccCCCccCCccCCCCCCEEEE
Confidence 0 1223356788899985432 2 1 2 589999876 32 11111111222346899999999998
Q ss_pred EcC---CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEec-CCCCcE
Q 044557 248 GAC---DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLE-GHRGPV 321 (362)
Q Consensus 248 ~~~---d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~-~h~~~v 321 (362)
.-. .-.|.+|....-+.....+ .+......|..+.|+.+ .||..-.|. |.+|...+..+.+-+.+. .....+
T Consensus 274 ~q~~~~~~~VvFfErNGLrhgeF~l-~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGEFTL-RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESV 351 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeeeEec-CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCC
Confidence 865 3457777654322221111 11234456888999754 677666655 999986665665555554 223345
Q ss_pred EEEEeeecC
Q 044557 322 KCLAAAIDN 330 (362)
Q Consensus 322 ~~~~~~~~~ 330 (362)
..+.|+|+.
T Consensus 352 ~~~~Wdpe~ 360 (928)
T PF04762_consen 352 NFVKWDPEK 360 (928)
T ss_pred CceEECCCC
Confidence 557887763
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-06 Score=73.14 Aligned_cols=207 Identities=18% Similarity=0.251 Sum_probs=126.5
Q ss_pred CccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eEEEec-CCcEEEE
Q 044557 18 HNSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LFSAHQ-DHKIRVW 93 (362)
Q Consensus 18 H~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~s~~~-dg~i~~w 93 (362)
|.+.|+-+... .+++.+++.||.+|.|.-.... -.++.- ....|-+.+.++..+-+. +.|.+. |..++++
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~is---GvEfVK---hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRIS---GVEFVK---HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCcc---ceeehh---hhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 78888888875 7899999999999999643211 111111 112234455566555444 445455 8999999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec-CceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV-DAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
|+.+..... ..++..+|. ...+.... +.+. .+-++.-.++.+.++|-.
T Consensus 82 DvEn~Dmin--miKL~~lPg---------------------~a~wv~skGd~~s--------~IAVs~~~sg~i~VvD~~ 130 (558)
T KOG0882|consen 82 DVENFDMIN--MIKLVDLPG---------------------FAEWVTSKGDKIS--------LIAVSLFKSGKIFVVDGF 130 (558)
T ss_pred Eeeccchhh--hcccccCCC---------------------ceEEecCCCCeee--------eEEeecccCCCcEEECCc
Confidence 987644211 001111111 00000000 1111 122333467899999976
Q ss_pred Cce-EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCC-CCcce-e---------ehhhhccccceeEEEEe
Q 044557 173 DFK-CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPG-NKKHS-L---------VDVLERHNSGINALALS 239 (362)
Q Consensus 173 ~~~-~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~-~~~~~-~---------~~~~~~h~~~v~~i~~s 239 (362)
..- ....+...|..+|..+.++|-+. +++....|.|.-|..+.. ..... + ...+.......+++.|+
T Consensus 131 ~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs 210 (558)
T KOG0882|consen 131 GDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS 210 (558)
T ss_pred CCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEc
Confidence 543 33445567999999999999887 778888999999987631 00000 0 11112234557889999
Q ss_pred cCCCEEEEEcCCCcEEEEeccC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
|+|..+.+-+.|..||++...+
T Consensus 211 p~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 211 PDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred cccCcccccCcccEEEEEEecc
Confidence 9999999999999999998754
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0001 Score=68.74 Aligned_cols=127 Identities=17% Similarity=0.080 Sum_probs=73.5
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeC-C--CeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSA-D--KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~-d--g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
.|.++|....+. +.+. .+...+...+|+|+|+ ++..+. + ..|.+|++.++... . +. .....+....|+|
T Consensus 180 ~l~~~d~~g~~~-~~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~-l~---~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARA-VTLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-Q-IT---NFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCc-eEEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-E-cc---CCCCCcCCeEECC
Confidence 477777765543 3333 3566788999999997 544432 2 36888998776422 1 11 1223345689999
Q ss_pred CCCEEE-EEcCCC--cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEE-EeeCCCc--EEEeeC
Q 044557 241 DGSVLY-SGACDR--SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVC-SGSADKT--IRIWRG 303 (362)
Q Consensus 241 ~~~~l~-s~~~d~--~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~-s~s~D~~--i~~W~~ 303 (362)
||+.|+ +.+.++ .|.+||+.++. .. .+..+........|+++ .++ +...++. |.+++.
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~--~~---~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQ--LS---RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC--eE---EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 999877 455555 57778887543 22 22333333444566654 444 4434444 555554
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3e-06 Score=72.21 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=109.0
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
++.+.+..|-+-|++++... .+. -.+.|.++.|...+. ++.|..+|.|..+|+.....-.......-.|...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 45566788888888876432 222 345677778877555 67899999999999987632211111222488999998
Q ss_pred EEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE----eCCeEEEeeCCCcEEEeeCCCCceeee
Q 044557 237 ALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV----VSDLVCSGSADKTIRIWRGIDRNYTCL 311 (362)
Q Consensus 237 ~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~----~~~~~~s~s~D~~i~~W~~~~~~~~~~ 311 (362)
..-. ++++|++.+.+|.|++||++--+.. .-+....||...-.-+.+ ....+++++.|..-|||+... +.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~-~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~--ghLl 381 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCK-KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS--GHLL 381 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcc-cceeeeecccccccccccccccccceEEEccCeeEEEEEeccc--Ccee
Confidence 8766 7899999999999999998754332 234567788765433332 234889999999999998643 3333
Q ss_pred eEec----CCCCcEEEEEeee
Q 044557 312 AVLE----GHRGPVKCLAAAI 328 (362)
Q Consensus 312 ~~l~----~h~~~v~~~~~~~ 328 (362)
.++. .-..-++.++|..
T Consensus 382 ~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 382 CTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eccCCCCccccccccceehhc
Confidence 3321 1222456666653
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0022 Score=57.16 Aligned_cols=199 Identities=10% Similarity=0.088 Sum_probs=104.9
Q ss_pred eEEEEecCCCEEEEEE-C-CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCccee-
Q 044557 146 SALALTKDETLLYSVS-W-DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL- 222 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s-~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~- 222 (362)
..++++|||++|+... . +..|.+.|+.+++.+.++..+. ...-...+ +..+.+-+.||......+++..+....
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~--~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD--CYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC--CcEEEEec-CCccEEEeecCceEEEEecCCCceEEee
Confidence 3567899999998776 3 6899999999999888775422 11112222 222223344444444333322211100
Q ss_pred ehhhhccccceeE-EEEec-CCCEEEEEcCCCcEEEEeccCCCCcE-EEEEeec------C-ccceeEEEEEeCC--eEE
Q 044557 223 VDVLERHNSGINA-LALSC-DGSVLYSGACDRSIIVWEKEEDDGNI-LVVGALR------G-HTKSILCMAVVSD--LVC 290 (362)
Q Consensus 223 ~~~~~~h~~~v~~-i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~------~-h~~~v~~~~~~~~--~~~ 290 (362)
...+..-..++.. -.|++ +|++++.... |+|.+-|+....... ..+..+. + ..+...-++++++ .+.
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 0000000001100 03455 8888888877 999999964422111 1111111 0 1223334666643 333
Q ss_pred E-e-e--------CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 291 S-G-S--------ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 291 s-~-s--------~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
. . . ..+.|-++|. .+.+.+..+.- ...++.++++|+++. .+.++...++.|.+.|.+.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~--~t~kvi~~i~v-G~~~~~iavS~Dgkp-------~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDA--KTGKRLRKIEL-GHEIDSINVSQDAKP-------LLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEecCCccccccCCCCEEEEEEC--CCCeEEEEEeC-CCceeeEEECCCCCe-------EEEEeCCCCCcEEEEECcC
Confidence 2 2 1 1246777774 34555665541 337999999887541 2344445678899999864
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0003 Score=67.23 Aligned_cols=223 Identities=17% Similarity=0.267 Sum_probs=130.3
Q ss_pred ceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCC-----cEEEE
Q 044557 21 YVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDH-----KIRVW 93 (362)
Q Consensus 21 ~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg-----~i~~w 93 (362)
.|++++-++..+|-|+.||.|-+.+-.- .....+. +.....+..+.... +.|++.+.|+ .|++|
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fq------a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF---QLIRGFQ------AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc---eeeehhe------ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence 7777777788999999999998776321 0101110 11111133332333 3577777665 49999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeE--EeeecCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCT--WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
+++..++..++ ..+..+ +..+ ......++.+++++.+-+.+|+|-.||.|..+.-
T Consensus 98 ~lek~~~n~sP-~c~~~~----------------------ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G 154 (933)
T KOG2114|consen 98 DLEKVDKNNSP-QCLYEH----------------------RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG 154 (933)
T ss_pred cccccCCCCCc-ceeeee----------------------eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC
Confidence 98755322210 000000 0000 0012346788999999999999999999999852
Q ss_pred C---CceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE
Q 044557 172 S---DFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 172 ~---~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 247 (362)
. +.-....+...-.++|+.+++..++. ++-+.+-..|.+|.+. ++. .....+..|..+++|.++++....+++
T Consensus 155 Di~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~--p~~~~ld~~G~~lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 155 DILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRT--PSLKVLDNNGISLNCSSFSDGTYQFIC 231 (933)
T ss_pred cchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCC--cceeeeccCCccceeeecCCCCccEEE
Confidence 2 11112223334567999999988776 2333444579999887 332 123345667788999998875554555
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeec-CccceeEEEE
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALR-GHTKSILCMA 283 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~-~h~~~v~~~~ 283 (362)
++ +..+.+|+..... ..-++. ||.....++.
T Consensus 232 a~-~e~l~fY~sd~~~----~cfaf~~g~kk~~~~~~ 263 (933)
T KOG2114|consen 232 AG-SEFLYFYDSDGRG----PCFAFEVGEKKEMLVFS 263 (933)
T ss_pred ec-CceEEEEcCCCcc----eeeeecCCCeEEEEEEe
Confidence 55 4568899876422 122344 6666555444
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0002 Score=63.92 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=89.1
Q ss_pred eecCceeEEEEecCCCEEEEEECCC-cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDR-TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
+|...|.-..+..+.+-++.|..|| .+-|+|.++++..+ +. ..-+.|.++..+|+|+ ++.+....++.+.|+++++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e-~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IE-KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-ee-CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 5667788888887888899999999 99999999887544 32 4567899999999998 5666666789999999886
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCCC----cEEEEecc
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACDR----SIIVWEKE 260 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~----~i~~wd~~ 260 (362)
.. ++. +...+-|+.++|+|+++++|-+--+| .|++||+.
T Consensus 435 v~--~id--kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 435 VR--LID--KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred ee--Eec--ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 32 222 12345689999999999999887776 47888864
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00029 Score=64.05 Aligned_cols=129 Identities=12% Similarity=0.259 Sum_probs=88.7
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEE--EeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYT--GSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s--~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
+.++.+.+++...+.-.+ .-+++|.++.|+|+++ ++. |-.=-++.|||+.. .... .-..++=+++-|+
T Consensus 250 Eq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~------df~egpRN~~~fn 320 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVF------DFPEGPRNTAFFN 320 (566)
T ss_pred cceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeE------eCCCCCccceEEC
Confidence 467888888855554444 3578999999999996 443 44556899998763 2221 2235566789999
Q ss_pred cCCCEEEEEcCC---CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEee------CCCcEEEeeCC
Q 044557 240 CDGSVLYSGACD---RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGS------ADKTIRIWRGI 304 (362)
Q Consensus 240 ~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s------~D~~i~~W~~~ 304 (362)
|.|++|+.+|.+ |.|-+||..+.. .+..+......+..++.++++++|+. .|+.+|||+..
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~K----~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNRK----LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccchh----hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 999999988865 579999997622 34445444444444555566777665 48999999864
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.2e-05 Score=69.90 Aligned_cols=207 Identities=14% Similarity=0.119 Sum_probs=129.2
Q ss_pred EEEEEc--CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEE
Q 044557 72 KSLVVL--ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALA 149 (362)
Q Consensus 72 ~~i~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 149 (362)
.++.++ .++++.|+.||.+++-.+.+..+..+... ++.... + ...+++.+|.+.|..+.
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~sn-------L-----------smNQtLeGH~~sV~vvT 78 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAASN-------L-----------SMNQTLEGHNASVMVVT 78 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccc-cccccc-------c-----------chhhhhccCcceEEEEE
Confidence 345554 35699999999999999876543222110 110000 0 01134568999999999
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEee-eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhh
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLESI-TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLE 227 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 227 (362)
|+.+.+.|-+...+|.|.+|=+-.+...+.+ ..-..+.|.+++|+.+|. +...-.||.|.+=.++. +. ..-+.++
T Consensus 79 WNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NR--IwgKeLk 155 (1189)
T KOG2041|consen 79 WNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NR--IWGKELK 155 (1189)
T ss_pred eccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ce--ecchhcc
Confidence 9999999999999999999988776543332 233456789999998885 77777888776654432 11 1111121
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC-------CcEEEEEeecCccceeEEEEEe--------CC--eEE
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD-------GNILVVGALRGHTKSILCMAVV--------SD--LVC 290 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~-------~~~~~~~~~~~h~~~v~~~~~~--------~~--~~~ 290 (362)
+ .-...+.|++|.+.++-+-..|.+.+||.+.+- ......+.+......|..+.|. |+ .++
T Consensus 156 g--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la 233 (1189)
T KOG2041|consen 156 G--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA 233 (1189)
T ss_pred h--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE
Confidence 1 113357899999999888889999999965321 1111122222122223344332 22 688
Q ss_pred EeeCCCcEEEee
Q 044557 291 SGSADKTIRIWR 302 (362)
Q Consensus 291 s~s~D~~i~~W~ 302 (362)
.+-..|.+.+-+
T Consensus 234 vcy~nGr~QiMR 245 (1189)
T KOG2041|consen 234 VCYANGRMQIMR 245 (1189)
T ss_pred EEEcCceehhhh
Confidence 888888888775
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0024 Score=58.75 Aligned_cols=265 Identities=10% Similarity=0.050 Sum_probs=137.5
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCccccee
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~ 107 (362)
.+..++.++.++.+.-+|.++.+..+...... ....+..+.++.++.+..++.|..+|.++++........
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---------~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---------EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC---------ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 34566667788888888877654332221110 011122334566777888888888888766532110000
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCc--
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD-- 185 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~-- 185 (362)
.+.. .......++ + . +..++.++.++.+...|.++++.+-.......
T Consensus 190 ---~~~~----------------------~~~~~~sP~--v--~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~ 238 (394)
T PRK11138 190 ---VPSL----------------------TLRGESAPA--T--A--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG 238 (394)
T ss_pred ---CCcc----------------------cccCCCCCE--E--E--CCEEEEEcCCCEEEEEEccCChhhheeccccCCC
Confidence 0000 000000111 1 1 22455567788888888887765432211000
Q ss_pred -c---cEEEEEEcC---CCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 186 -D---AINAVALSD---DGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 186 -~---~v~~v~~~~---~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
. ....+..+| ++.++.++.+|.+.-+|..+++..-+. ... ....+ ..++..|+.++.|+.+...|
T Consensus 239 ~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~--~~~----~~~~~--~~~~~~vy~~~~~g~l~ald 310 (394)
T PRK11138 239 ATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR--EYG----SVNDF--AVDGGRIYLVDQNDRVYALD 310 (394)
T ss_pred ccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee--cCC----CccCc--EEECCEEEEEcCCCeEEEEE
Confidence 0 000111112 566778888999999999887533221 111 11112 22567888888999999999
Q ss_pred ccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEE-EEeeecCCccCCCC
Q 044557 259 KEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKC-LAAAIDNDRCDSSD 337 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~-~~~~~~~~~~~~~~ 337 (362)
..+++.. .....+ .+ ....+....++.+..++.||.+...+.. +++.+....-....+.. ..+.
T Consensus 311 ~~tG~~~-W~~~~~-~~-~~~~sp~v~~g~l~v~~~~G~l~~ld~~--tG~~~~~~~~~~~~~~s~P~~~---------- 375 (394)
T PRK11138 311 TRGGVEL-WSQSDL-LH-RLLTAPVLYNGYLVVGDSEGYLHWINRE--DGRFVAQQKVDSSGFLSEPVVA---------- 375 (394)
T ss_pred CCCCcEE-Eccccc-CC-CcccCCEEECCEEEEEeCCCEEEEEECC--CCCEEEEEEcCCCcceeCCEEE----------
Confidence 8764321 111111 11 1122223456788889999999998853 34444444322222221 1111
Q ss_pred CceEEEecCCCCcEEEEec
Q 044557 338 TSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 338 ~~~~l~s~s~D~~i~~W~~ 356 (362)
++ .|+.++.||.+..++.
T Consensus 376 ~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 376 DD-KLLIQARDGTVYAITR 393 (394)
T ss_pred CC-EEEEEeCCceEEEEeC
Confidence 11 3667789999887764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00036 Score=66.70 Aligned_cols=193 Identities=17% Similarity=0.236 Sum_probs=117.6
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEeeeccCccc-EEEEEEcCC-CcEEEEeCCC-----eEEEEeCCCCCCcc--
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDA-INAVALSDD-GDVYTGSADK-----KIKVWRRSPGNKKH-- 220 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~-v~~v~~~~~-~~~~s~~~dg-----~i~iw~~~~~~~~~-- 220 (362)
+++.+..+|.|+.||.|.+.+-. .+.++.++ ++... |..+....+ ..+++.+.|+ .+++|+++...+..
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EcCCCceEEEeeccccEEEeccc-ceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 57788899999999999888632 33434443 44444 333333322 2367776665 48999987653222
Q ss_pred eee------h-hhhccccceeEEEEecCCCEEEEEcCCCcEEEEecc--CCCCcEEEEEeecCccceeEEEEEeCC--eE
Q 044557 221 SLV------D-VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKE--EDDGNILVVGALRGHTKSILCMAVVSD--LV 289 (362)
Q Consensus 221 ~~~------~-~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~ 289 (362)
.+. . .......|+++++++.+-+.++.|-.+|.|.++.-. ..++.... -......+|+.+++-.+ .+
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~--~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD--YSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee--eeccCCCCceeeEEecCCcee
Confidence 111 1 112235678999999999999999999999988522 11121111 11123467888887432 21
Q ss_pred EEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 290 CSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 290 ~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+=+..-..|.+|...++. ...+.+..|.-.+.|-++++. +..+|++++ .-+.+|+.+
T Consensus 187 lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~--------t~qfIca~~--e~l~fY~sd 243 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDG--------TYQFICAGS--EFLYFYDSD 243 (933)
T ss_pred EEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCC--------CccEEEecC--ceEEEEcCC
Confidence 222333569999876554 446668888888998887543 223565554 467777654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.5e-05 Score=66.89 Aligned_cols=200 Identities=17% Similarity=0.126 Sum_probs=125.2
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEE--eeeccCcccEEEEEEcCCCc-EEEEeC-CCeEEEEeCCCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLE--SITNAHDDAINAVALSDDGD-VYTGSA-DKKIKVWRRSPG 216 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~~h~~~v~~v~~~~~~~-~~s~~~-dg~i~iw~~~~~ 216 (362)
|.+.|+-+..+ ..+++.+++-||.++.|.-..-.-++ .-...|-..+.+++.+-++. +.|.+. |..+|++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 55556555433 45789999999999999754322121 12246778888999998997 557666 999999999875
Q ss_pred CCcceeehhhhccccceeEEEEecCC---CEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDG---SVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVC 290 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~---~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~ 290 (362)
....-+ . +..-+..+ -.+...| ..|+ +.-.++.|.++|-....... ....+-|..+|.++.+. .+.++
T Consensus 87 Dminmi-K-L~~lPg~a--~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 87 DMINMI-K-LVDLPGFA--EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred chhhhc-c-cccCCCce--EEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc--ceecccccCceEEEEeecccccee
Confidence 432111 1 11111111 1122223 1333 34467889999976543322 22344589999999886 45788
Q ss_pred EeeCCCcEEEeeCCCCceee--------------eeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 291 SGSADKTIRIWRGIDRNYTC--------------LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 291 s~s~D~~i~~W~~~~~~~~~--------------~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|....|.|.-|.... .++. +-.+..-+....++.|+|++. .+.+-+.|..||++++
T Consensus 161 SiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---------qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA---------QISTLNPDRKVRGFVF 230 (558)
T ss_pred eccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccC---------cccccCcccEEEEEEe
Confidence 888889999998642 1110 011222345667888887764 3667779999999987
Q ss_pred c
Q 044557 357 S 357 (362)
Q Consensus 357 ~ 357 (362)
.
T Consensus 231 K 231 (558)
T KOG0882|consen 231 K 231 (558)
T ss_pred c
Confidence 4
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0018 Score=54.85 Aligned_cols=184 Identities=16% Similarity=0.142 Sum_probs=101.7
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCccee-ehhhhcccc
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL-VDVLERHNS 231 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~-~~~~~~h~~ 231 (362)
++..+++++.++.|..||..+++.+-...... .+.......++.++.++.|+.+..+|..+++...+. ........
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~- 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG--PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG- 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSS--CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc--cccceeeecccccccccceeeeEecccCCcceeeeeccccccccc-
Confidence 46677777899999999999998766554321 111112334566777888899999998888754432 11101111
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce----------e-EEEEEeCCeEEEeeCCCc-EE
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS----------I-LCMAVVSDLVCSGSADKT-IR 299 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~s~s~D~~-i~ 299 (362)
.........++..++.+..++.|..+|..+++. +......... + ..+.+..+.+..++.++. +.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL----LWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVA 187 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEE----EEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEE
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcE----EEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEE
Confidence 112223333488888898899999999886542 1122221211 1 122233446666666664 55
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+ +..... .+.... ...+..+ ... .+ ..|+.++.|+.+..||+..
T Consensus 188 ~-d~~tg~--~~w~~~--~~~~~~~-~~~--------~~-~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 188 V-DLATGE--KLWSKP--ISGIYSL-PSV--------DG-GTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp E-ETTTTE--EEEEEC--SS-ECEC-EEC--------CC-TEEEEEETTTEEEEEETTT
T ss_pred E-ECCCCC--EEEEec--CCCccCC-cee--------eC-CEEEEEeCCCEEEEEECCC
Confidence 5 754322 222221 1112211 111 12 2455666899999999863
|
... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.4e-05 Score=69.99 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=99.0
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
.+.+.|++++ +++|+-|+-+|.|++.+....- .+. ..|... .-+|. ++||+.||+|.|-.+.+.....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccc-cccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3556777776 5789999999999999876432 111 134322 33454 8999999999999887765432
Q ss_pred eeehhhhccccceeEEEEecC-----CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC
Q 044557 221 SLVDVLERHNSGINALALSCD-----GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD 295 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~-----~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D 295 (362)
+. ....++.+|+++|+ .+++++||.-| +.++...--...... .+..-.+.|.++.|-++++|=++.+
T Consensus 108 ~~-----df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~g~lIAWand~ 179 (846)
T KOG2066|consen 108 QY-----DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWRGNLIAWANDD 179 (846)
T ss_pred eE-----ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEecCcEEEEecCC
Confidence 22 23568999999997 57899999998 878764321111111 2333457899999999988877776
Q ss_pred CcEEEeeCCC
Q 044557 296 KTIRIWRGID 305 (362)
Q Consensus 296 ~~i~~W~~~~ 305 (362)
| |++||...
T Consensus 180 G-v~vyd~~~ 188 (846)
T KOG2066|consen 180 G-VKVYDTPT 188 (846)
T ss_pred C-cEEEeccc
Confidence 5 89999543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00066 Score=64.49 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=89.9
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC------CcEEEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD------GDVYTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~------~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
+|.+++|||.||+|.|-.+-+.+...++. ...++.+|+++|+ +++++|+.-| +.++...=-....+. .+
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l 156 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VL 156 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--ee
Confidence 59999999999999999887776555443 3568999999997 3589999888 777642211111111 23
Q ss_pred hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee------EEEEEeCC-eEEEeeCCCcEE
Q 044557 227 ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI------LCMAVVSD-LVCSGSADKTIR 299 (362)
Q Consensus 227 ~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v------~~~~~~~~-~~~s~s~D~~i~ 299 (362)
..-.++|.++.|. |.++|=++.+| |++||..... .+..++-....+ ..+.|.++ .++-|-.| +|+
T Consensus 157 ~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~----~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~ 228 (846)
T KOG2066|consen 157 SEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQ----RLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVK 228 (846)
T ss_pred ecCccceEEEEec--CcEEEEecCCC-cEEEeccccc----eeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEE
Confidence 4456789999995 67777777666 8999987533 122222111222 23455444 56666555 677
Q ss_pred EeeCC
Q 044557 300 IWRGI 304 (362)
Q Consensus 300 ~W~~~ 304 (362)
+.++.
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 77754
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0052 Score=56.60 Aligned_cols=234 Identities=12% Similarity=0.087 Sum_probs=122.7
Q ss_pred ecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeec--ceeEEEEEcCceeEEEecCCcEEEEecCCCCCCccc
Q 044557 27 LAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK--GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQK 104 (362)
Q Consensus 27 ~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~ 104 (362)
+.+..++.++.++.+.-+|.++.+..+............... .....+...++.++.++.++.+..+|.++++..-+.
T Consensus 67 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred EECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 346677788888998888887654332222111000000000 001123455678888999999999998776532111
Q ss_pred ceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccC
Q 044557 105 YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH 184 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h 184 (362)
.. + . . ....++ + .+..++.++.++.|.-+|.++++.+-......
T Consensus 147 ~~-----~--~-~----------------------~~ssP~----v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 147 KV-----A--G-E----------------------ALSRPV----V--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred cC-----C--C-c----------------------eecCCE----E--ECCEEEEECCCCEEEEEEccCCCEeeeecCCC
Confidence 00 0 0 0 000111 1 13345567778999999999988765443211
Q ss_pred ccc-E---EEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhh--ccc-cceeEEEEec--CCCEEEEEcCCCcEE
Q 044557 185 DDA-I---NAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE--RHN-SGINALALSC--DGSVLYSGACDRSII 255 (362)
Q Consensus 185 ~~~-v---~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~h~-~~v~~i~~s~--~~~~l~s~~~d~~i~ 255 (362)
... . .+-.. .++.++.++.+|.+.-+|..+++...+...... .+. .....+.-+| .+..++.++.++.+.
T Consensus 191 ~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ 269 (394)
T PRK11138 191 PSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLV 269 (394)
T ss_pred CcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEE
Confidence 000 0 00011 134577778889998888887764322110000 000 0000111122 356777888899999
Q ss_pred EEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeC
Q 044557 256 VWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 256 ~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~ 303 (362)
.+|..+++.... ..+ .....+...++.+..++.|+.+...+.
T Consensus 270 ald~~tG~~~W~--~~~----~~~~~~~~~~~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 270 ALDLRSGQIVWK--REY----GSVNDFAVDGGRIYLVDQNDRVYALDT 311 (394)
T ss_pred EEECCCCCEEEe--ecC----CCccCcEEECCEEEEEcCCCeEEEEEC
Confidence 999886542211 111 112233455667777788888888775
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0049 Score=52.23 Aligned_cols=185 Identities=16% Similarity=0.153 Sum_probs=101.8
Q ss_pred cCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCE
Q 044557 77 LADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL 156 (362)
Q Consensus 77 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 156 (362)
.++.+++++.++.|..||..+++.... ..++ +.+.... ..++..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~-----~~~~------------------------------~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWR-----FDLP------------------------------GPISGAP-VVDGGR 78 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEE-----EECS------------------------------SCGGSGE-EEETTE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE-----eecc------------------------------cccccee-eecccc
Confidence 566788889999999999876542100 0000 0000001 123445
Q ss_pred EEEEECCCcEEEEECCCceEEEeeeccCcc-----cEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcccc
Q 044557 157 LYSVSWDRTIKIWRTSDFKCLESITNAHDD-----AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS 231 (362)
Q Consensus 157 l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~-----~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~ 231 (362)
++.++.|+.|..+|..+++.+-........ ......+. ++.++.+..++.|..+|..+++...........-..
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 666678889999999999876653211110 11112222 445778888999999999988643322111100001
Q ss_pred ------ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEE-EEEeCCeEEEeeCCCcEEEeeCC
Q 044557 232 ------GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC-MAVVSDLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 232 ------~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~s~s~D~~i~~W~~~ 304 (362)
.+..-.+..++ .++.++.++.+..+|+.+++ .. . ... ...+.. ....++.++.++.|+.+..||..
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~--~~-w-~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE--KL-W-SKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE--EE-E-EEC--SS-ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC--EE-E-Eec--CCCccCCceeeCCEEEEEeCCCEEEEEECC
Confidence 11122222244 88888888864444887644 11 1 112 112223 44556777777799999999964
Q ss_pred C
Q 044557 305 D 305 (362)
Q Consensus 305 ~ 305 (362)
.
T Consensus 231 t 231 (238)
T PF13360_consen 231 T 231 (238)
T ss_dssp T
T ss_pred C
Confidence 3
|
... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.8e-05 Score=69.23 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=78.7
Q ss_pred cCceeEEEEec-CCCEEEEE----ECCCc----EEEEECCCce--EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEE
Q 044557 142 VDAVSALALTK-DETLLYSV----SWDRT----IKIWRTSDFK--CLESITNAHDDAINAVALSDDGD-VYTGSADKKIK 209 (362)
Q Consensus 142 ~~~v~~~~~~~-~~~~l~s~----s~d~~----i~iwd~~~~~--~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~ 209 (362)
.....++.|+- +...+.+. +.+|. -.+|++...+ ++..........|.+++++|+.. ++.|+.||.|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 34456666664 33334432 23443 3466665443 23333345677899999999876 89999999999
Q ss_pred EEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCC
Q 044557 210 VWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEED 262 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~ 262 (362)
+||...+... . ....-.++.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus 285 LyD~~~~~t~--~----~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTL--L----AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeee--e----eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9998654211 1 123445788999999999999999999999998643
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00018 Score=69.14 Aligned_cols=150 Identities=17% Similarity=0.247 Sum_probs=100.7
Q ss_pred eEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE
Q 044557 71 VKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL 150 (362)
Q Consensus 71 v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 150 (362)
+.-|.-++..++.|...|+|.+-|.++.+.. .++..|++.+..+..
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~i----------------------------------ht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFETI----------------------------------HTFDAHSGSISDFDV 225 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCCcCcee----------------------------------eeeeccccceeeeec
Confidence 4444445566889999999999887765432 233457777766544
Q ss_pred ecCCCEEEEEEC---------CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCc
Q 044557 151 TKDETLLYSVSW---------DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 151 ~~~~~~l~s~s~---------d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~ 219 (362)
.|+.|++||. |..|+|||++..+.+.-+. -+.++ .-+.|.|.- +++.++..|...+-|..+....
T Consensus 226 --~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 226 --QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred --cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc-cccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 5778888874 5668999998876655443 23332 446677764 4788888898888874332221
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
..-..........+..+++|+++..++.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 111111122234589999999999999999999999997
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0037 Score=52.61 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=29.9
Q ss_pred cccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 229 h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
....|..|.+||||+.|++...+|.|.+|++.+
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 356799999999999999999999999999864
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0078 Score=60.15 Aligned_cols=162 Identities=18% Similarity=0.273 Sum_probs=92.7
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECC----CceEE-------------------Eeee-----------ccCcc-
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTS----DFKCL-------------------ESIT-----------NAHDD- 186 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~----~~~~~-------------------~~~~-----------~~h~~- 186 (362)
...|.+++|+||+..++-.+.++++.+-... ..+.+ ..+. ..+..
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence 3578999999999999988888887665321 00011 0000 00110
Q ss_pred --------cEEEEEEcCCCcEEEE-----eCC-CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE---c
Q 044557 187 --------AINAVALSDDGDVYTG-----SAD-KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG---A 249 (362)
Q Consensus 187 --------~v~~v~~~~~~~~~s~-----~~d-g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~---~ 249 (362)
.-.+|+|-.||++++. -.+ ++|++||.+ +.....- ..-..--.+++|-|.|..+++- .
T Consensus 189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s----e~~~~l~~~LsWkPsgs~iA~iq~~~ 263 (1265)
T KOG1920|consen 189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS----EPVEGLQHSLSWKPSGSLIAAIQCKT 263 (1265)
T ss_pred ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc----CcccccccceeecCCCCeEeeeeecC
Confidence 1135889999975543 345 899999987 3211110 0111223578999999998876 4
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEE---eeCCCcEEEeeCCCCcee
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCS---GSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s---~s~D~~i~~W~~~~~~~~ 309 (362)
.|+.|.+|....-+.....+ .++.....|..++|.. +.++. ..+...|++|-..+..+.
T Consensus 264 sd~~IvffErNGL~hg~f~l-~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 264 SDSDIVFFERNGLRHGEFVL-PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred CCCcEEEEecCCcccccccc-CCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence 56679999764322221111 1222233477888853 45555 445555999975444443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.011 Score=50.45 Aligned_cols=190 Identities=18% Similarity=0.113 Sum_probs=108.3
Q ss_pred EEEEec-CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEc-CCCcEEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 147 ALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS-DDGDVYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 147 ~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
+..|.+ ++.++++--..+.|..|+..+++... +... ....+++. +++.++.+..++. .++|..+++.. .+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~---~~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~-~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP---GPNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVT-VLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS---SEEEEEEECTTSEEEEEETTCE-EEEETTTTEEE-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC---CCceEEEEccCCEEEEEEcCce-EEEecCCCcEE-EEee
Confidence 466787 66677776678999999998876533 2211 26677777 7888888777655 45588776322 2222
Q ss_pred hh-hc-cccceeEEEEecCCCEEEEEcCC--------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEE
Q 044557 225 VL-ER-HNSGINALALSCDGSVLYSGACD--------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCS 291 (362)
Q Consensus 225 ~~-~~-h~~~v~~i~~s~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s 291 (362)
.. .. .....+.+++.|+|...++.... |.|..++.. .....+ .........++++++ ++++
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~---~~~~~~---~~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD---GKVTVV---ADGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT---SEEEEE---EEEESSEEEEEEETTSSEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC---CeEEEE---ecCcccccceEECCcchheeec
Confidence 11 12 34678899999999977766544 345555544 222221 112333467778764 4567
Q ss_pred eeCCCcEEEeeCCCCce-----eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 292 GSADKTIRIWRGIDRNY-----TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~-----~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
-+..+.|..++...... ..+..+.+-....-.+++..+ +++.++.-..+.|.+++-.
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~---------G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD---------GNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT---------S-EEEEEETTTEEEEEETT
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC---------CCEEEEEcCCCEEEEECCC
Confidence 77888888887532222 112222222223666766433 3445444445677777654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=67.69 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=84.2
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcce-e
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHS-L 222 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~-~ 222 (362)
+.--+++..+++++.|+.-|.+.+|+-..++....-..+-.+.+..+.++++.+ +++|+..|.|.++.+....+... .
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 333445667899999999999999997766544322222334455666788777 56788889999998766432211 1
Q ss_pred -ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 223 -VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 223 -~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
...-+.|...|+++.|++|++.+++|..-|.|.+-.+..
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 122234788999999999999999999999998887765
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.015 Score=49.64 Aligned_cols=172 Identities=19% Similarity=0.151 Sum_probs=100.4
Q ss_pred eeEEEEe-cCCCEEEEEECCCcEEEEECCCceEEEeeec---c-CcccEEEEEEcCCCcEEEEeCC---------CeEEE
Q 044557 145 VSALALT-KDETLLYSVSWDRTIKIWRTSDFKCLESITN---A-HDDAINAVALSDDGDVYTGSAD---------KKIKV 210 (362)
Q Consensus 145 v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~-h~~~v~~v~~~~~~~~~s~~~d---------g~i~i 210 (362)
...+++. ++++ |+.+.. +.+.++|..+++....... . .....+.+++.|+|.++.+... |.|..
T Consensus 42 ~~G~~~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSE-EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCE-EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 5667777 6655 444554 4555669888764333221 1 2346789999999986654322 45666
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcE---EEEEeecCccceeEEEEEeC
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNI---LVVGALRGHTKSILCMAVVS 286 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~---~~~~~~~~h~~~v~~~~~~~ 286 (362)
++.. +. ..... ..-...+.|+|+||++.|+ +-+..+.|..|++....... .....+....+..-.+++..
T Consensus 120 ~~~~-~~-~~~~~----~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~ 193 (246)
T PF08450_consen 120 IDPD-GK-VTVVA----DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS 193 (246)
T ss_dssp EETT-SE-EEEEE----EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT
T ss_pred ECCC-Ce-EEEEe----cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC
Confidence 6654 22 11111 1233467899999999776 66778889999986544312 22223333333455677754
Q ss_pred --CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 287 --DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 287 --~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
++.++.-..+.|.+++.. ++.+..+.--...+++++|.
T Consensus 194 ~G~l~va~~~~~~I~~~~p~---G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 194 DGNLWVADWGGGRIVVFDPD---GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TS-EEEEEETTTEEEEEETT---SCEEEEEE-SSSSEEEEEEE
T ss_pred CCCEEEEEcCCCEEEEECCC---ccEEEEEcCCCCCEEEEEEE
Confidence 466666677889999843 44455444334478999984
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.017 Score=53.48 Aligned_cols=112 Identities=12% Similarity=0.037 Sum_probs=67.4
Q ss_pred ceeEEEEecCCCE-EEEEECC---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCC--CeEEEEeCCC
Q 044557 144 AVSALALTKDETL-LYSVSWD---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSAD--KKIKVWRRSP 215 (362)
Q Consensus 144 ~v~~~~~~~~~~~-l~s~s~d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~d--g~i~iw~~~~ 215 (362)
....-.|+||++. ++..+.+ ..|.++|+.+++... +.. ..+......|+|||+ + ++.+.+ ..|.++++.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-Eec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 5567889999984 5544433 468888998876533 221 334455677999996 4 344434 4677778766
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEc-CCC--cEEEEeccCC
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDR--SIIVWEKEED 262 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~--~i~~wd~~~~ 262 (362)
+.. ..+ ..+........|+|||+.|+-.+ ..+ .|.+.|+..+
T Consensus 267 g~~-~~L----T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 267 KTL-TQI----TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CcE-EEc----ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 532 122 12222233457999998776554 334 4666676643
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00075 Score=61.47 Aligned_cols=109 Identities=13% Similarity=0.246 Sum_probs=77.5
Q ss_pred cCceeEEEEecCCCEEEEEE--CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-E---EeCCCeEEEEeCCC
Q 044557 142 VDAVSALALTKDETLLYSVS--WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-T---GSADKKIKVWRRSP 215 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s---~~~dg~i~iw~~~~ 215 (362)
.++|-++.|+|+++-|+++- .=..+.|+|++.. .+..+ -+++-+++-|+|.|+++ . |..-|.|.+||+.+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 57899999999998777653 4468999998753 33323 35677889999999843 3 34568999999987
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcC------CCcEEEEecc
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC------DRSIIVWEKE 260 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~------d~~i~~wd~~ 260 (362)
.+. +..+.. ..-+-..|+|||++++++.. |+-++||+..
T Consensus 346 ~K~----i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 346 RKL----IAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hhh----cccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 432 222221 22355789999999998865 5778899864
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00027 Score=65.05 Aligned_cols=74 Identities=18% Similarity=0.119 Sum_probs=59.5
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~ 216 (362)
.....+.|++++|+...|+.|+.||.|.+||...+.... . ...-.+..++|+|+|. +++|+.-|.+.+||..-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~--~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL--A-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee--e-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 456789999999999999999999999999987664322 2 2334568899999998 667888899999998643
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0054 Score=44.39 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=64.1
Q ss_pred eeEEEEe---cCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcc
Q 044557 145 VSALALT---KDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 145 v~~~~~~---~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
|++|++. .|| +.|++||.|..||+|+-. +.+..+. ..+.|.+++-...++++.+-.+|+|-+|+..... .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl--W 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL--W 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEEEcCCCEEEEEecCCEEEEEeCccee--e
Confidence 3455543 343 579999999999999744 4555554 3567888888878889999999999999753211 1
Q ss_pred eeehhhhccccceeEEEEe-c--CC-CEEEEEcCCCcE
Q 044557 221 SLVDVLERHNSGINALALS-C--DG-SVLYSGACDRSI 254 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s-~--~~-~~l~s~~~d~~i 254 (362)
.. + .+..+.++.+. . || ..|++|=.+|.|
T Consensus 76 Ri----K-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 76 RI----K-SKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred ee----c-cCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 11 1 12235555433 2 33 367777777765
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.027 Score=50.28 Aligned_cols=178 Identities=17% Similarity=0.257 Sum_probs=106.7
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEE---cCC----Cc-EEEEeC----------CCeEEEEeCCCC-C--Cccee
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVAL---SDD----GD-VYTGSA----------DKKIKVWRRSPG-N--KKHSL 222 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~---~~~----~~-~~s~~~----------dg~i~iw~~~~~-~--~~~~~ 222 (362)
..|++.|..+++.+..+.......+.+++. ..+ .. ++.|+. .|.|.++++... . ....+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 367888888887776655444455665553 322 22 444432 288999998773 1 11122
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEee
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWR 302 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~ 302 (362)
... ...+++|++++-- ++. |+.+. .+.|.+|++...+ .+.....+..+. .+.++...+++++.|..-+.+.++.
T Consensus 82 i~~-~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~-~l~~~~~~~~~~-~i~sl~~~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHS-TEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK-TLLKKAFYDSPF-YITSLSVFKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEE-EEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS-SEEEEEEE-BSS-SEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEE-EeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc-cchhhheecceE-EEEEEeccccEEEEEEcccCEEEEE
Confidence 221 2346788888755 444 44333 4789999998654 344444444333 6788888899999999999999885
Q ss_pred CCC--CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GID--RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~--~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
... .....++.- .....++++.|.++++ .++.+..+|.+.++..+
T Consensus 156 ~~~~~~~l~~va~d-~~~~~v~~~~~l~d~~---------~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 156 YDEENNKLILVARD-YQPRWVTAAEFLVDED---------TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EETTTE-EEEEEEE-SS-BEEEEEEEE-SSS---------EEEEEETTSEEEEEEE-
T ss_pred EEccCCEEEEEEec-CCCccEEEEEEecCCc---------EEEEEcCCCeEEEEEEC
Confidence 432 223333332 2355678887764421 47789999999999886
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.036 Score=55.68 Aligned_cols=113 Identities=13% Similarity=0.277 Sum_probs=71.3
Q ss_pred eEEEEecCCCEEEEE-----ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEE----eCCCeEEEEeCCCC
Q 044557 146 SALALTKDETLLYSV-----SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTG----SADKKIKVWRRSPG 216 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~-----s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~----~~dg~i~iw~~~~~ 216 (362)
+.+.|-.||.++|+. ..-+.|++||-+ +. +.........--.+++|-|.|.++++ +.|+.|.+|... |
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-G 275 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-G 275 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-C
Confidence 568899999999883 223799999977 32 22222222333457899999874432 456689998653 2
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEE---EcCCCcEEEEeccC
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYS---GACDRSIIVWEKEE 261 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s---~~~d~~i~~wd~~~ 261 (362)
.....+.-.......+|..++|+.++..|+. ......|++|-..+
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 2111111112222334899999999999987 55555599998754
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.012 Score=52.93 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=98.0
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC-eEEEEeCCCCCCcceeehhhhccc
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADK-KIKVWRRSPGNKKHSLVDVLERHN 230 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~h~ 230 (362)
+|.+++..|. |...|.+...+-.++ .+|.+.|.-..+.-++. ++.|..|| .+-|||..+++.. .+...-
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-----r~e~~l 401 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-----RIEKDL 401 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-----EeeCCc
Confidence 5778888775 666666655554433 46777788888876654 88899999 9999999876522 222345
Q ss_pred cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEee----CCCcEEEeeCC
Q 044557 231 SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGS----ADKTIRIWRGI 304 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s----~D~~i~~W~~~ 304 (362)
+.|.++..+|+|+.++.+.....+.+.|+++++. +.+. +..-+-|+.+.++++ .+|=+- .-..|+++|+.
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv--~~id--kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV--RLID--KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe--eEec--ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 6789999999999999999999999999987542 2222 234456788888765 455333 34578999865
Q ss_pred C
Q 044557 305 D 305 (362)
Q Consensus 305 ~ 305 (362)
.
T Consensus 478 ~ 478 (668)
T COG4946 478 G 478 (668)
T ss_pred C
Confidence 4
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0063 Score=53.55 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=64.0
Q ss_pred eecCceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCC
Q 044557 140 HHVDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~ 216 (362)
.|...|..++|+|..+ ++..++-+++|+|.|+++..++.... .+ ..+++++|.-+.. +++|-.+|.|.+||+...
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 4566799999999887 78889999999999999988877665 45 6899999986653 889999999999999765
Q ss_pred C
Q 044557 217 N 217 (362)
Q Consensus 217 ~ 217 (362)
+
T Consensus 269 ~ 269 (463)
T KOG1645|consen 269 E 269 (463)
T ss_pred C
Confidence 4
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00021 Score=40.47 Aligned_cols=37 Identities=43% Similarity=0.767 Sum_probs=32.5
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEee
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWD 45 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd 45 (362)
.+++.++.+|...|.++.+. +.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45678888999999999995 56999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0052 Score=59.51 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=96.5
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeC---------CCeEEEEeCCCCCCcce
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSA---------DKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~---------dg~i~iw~~~~~~~~~~ 221 (362)
-.+++++.+|...|+|.+=|.++.+.++++. +|++.+.++... ++.|++++. |.-|+|||+......
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral-- 259 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL-- 259 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCceeeeee-ccccceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhcc--
Confidence 3567899999999999999999999999986 899988776655 334667653 667899998764322
Q ss_pred eehhhhccccceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcE
Q 044557 222 LVDVLERHNSGINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTI 298 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i 298 (362)
..+.-+-.+ .-+.|.|. ...++.++..|...+-|..+-.+...-+....-....+..++++ ++.++-|-.+|.|
T Consensus 260 --~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 260 --SPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred --CCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 111122222 44567774 45788888899998888322111111111111122336666654 5699999999999
Q ss_pred EEee
Q 044557 299 RIWR 302 (362)
Q Consensus 299 ~~W~ 302 (362)
.+|.
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9996
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=5.7e-05 Score=69.71 Aligned_cols=198 Identities=18% Similarity=0.243 Sum_probs=119.3
Q ss_pred eeEEEEec--CCCEEEEEECCCcEEEEECCCceEE-EeeeccCcccEEEEEEcCCC-c-EEEE----eCCCeEEEEeCCC
Q 044557 145 VSALALTK--DETLLYSVSWDRTIKIWRTSDFKCL-ESITNAHDDAINAVALSDDG-D-VYTG----SADKKIKVWRRSP 215 (362)
Q Consensus 145 v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~h~~~v~~v~~~~~~-~-~~s~----~~dg~i~iw~~~~ 215 (362)
+.|++..- +..+++.|..+|.|-+-.++...-. ..+..+|....++++|++-. . |++| -.|-.++|||..+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 45555433 3357888999999999887654322 34455677788999998753 2 4444 2355799999887
Q ss_pred CCCcceeehhhhc-cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEE---EeCCeEEE
Q 044557 216 GNKKHSLVDVLER-HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMA---VVSDLVCS 291 (362)
Q Consensus 216 ~~~~~~~~~~~~~-h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~---~~~~~~~s 291 (362)
.-....-...+.. --....+++|-.+.+.+.+|...+.+.++|++........+ .++.+.-+. |.++++++
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-----nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-----NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-----hhhhcccceecCCCCCceec
Confidence 6211111111111 23355688888888999999999999999987321111011 122232222 35678887
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCC----cEEEEEeeecCCccCCCCCceEEEecCCCC-cEEEEec
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRG----PVKCLAAAIDNDRCDSSDTSYLVCSGSLDC-DIKVWQI 356 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~----~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~-~i~~W~~ 356 (362)
-+ |+.|-+||...+--.++.++....+ .+..+++.|.+. | ++++-+.|. +|+++++
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt-------g-lla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT-------G-LLAVLSRDSITIRLYDI 274 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc-------c-hhhhhccCcceEEEecc
Confidence 77 8999999932111122333332222 388899987642 2 455665554 5888887
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.031 Score=50.84 Aligned_cols=198 Identities=15% Similarity=0.169 Sum_probs=113.6
Q ss_pred ceeEEEEecCCCEEEEEECCCc---------------EEEEECCCceEEEeeeccCccc--EE-EEEEcCCCcEEEEeCC
Q 044557 144 AVSALALTKDETLLYSVSWDRT---------------IKIWRTSDFKCLESITNAHDDA--IN-AVALSDDGDVYTGSAD 205 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~---------------i~iwd~~~~~~~~~~~~~h~~~--v~-~v~~~~~~~~~s~~~d 205 (362)
.|..+.|+|++++|.+=+.... +.+||+.++..+..+... ..+ .+ -+.|+-+..+++---.
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~-~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGI-SQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecccc-CCcccccceeeeeecchhhhhhcc
Confidence 4567788999999988665544 999999999888776532 222 33 4667766543322233
Q ss_pred CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC--EEE-----EEcCCCcEEEEeccCCCCcEEEEEeecCccce
Q 044557 206 KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS--VLY-----SGACDRSIIVWEKEEDDGNILVVGALRGHTKS 278 (362)
Q Consensus 206 g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~-----s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~ 278 (362)
..+.|+++ +++........+ ....|...+|+|.+. .|+ ..+.++++++|.+..+. .....++-.-.+
T Consensus 152 ~sl~i~e~-t~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~lfk~~~- 225 (561)
T COG5354 152 SSLYIHEI-TDNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNLFKVSG- 225 (561)
T ss_pred CeEEEEec-CCccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeeeEeecc-
Confidence 46888886 443222122222 235688889999643 334 34678889999886322 222222211111
Q ss_pred eEEEEE--eCCeEEE-----------eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEec
Q 044557 279 ILCMAV--VSDLVCS-----------GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345 (362)
Q Consensus 279 v~~~~~--~~~~~~s-----------~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 345 (362)
..+.| .+++++. --....+.|+++..+. +....+-.++|....|.|.+++ .-+++|
T Consensus 226 -~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p~S~~-------F~vi~g 294 (561)
T COG5354 226 -VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEPLSSR-------FAVISG 294 (561)
T ss_pred -cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---cceeccccccceeeeecccCCc-------eeEEec
Confidence 01222 1222110 0123456677754333 2223356789999999887654 447777
Q ss_pred CCCCcEEEEecccC
Q 044557 346 SLDCDIKVWQISFP 359 (362)
Q Consensus 346 s~D~~i~~W~~~~~ 359 (362)
-.+..+-++|+...
T Consensus 295 ~~pa~~s~~~lr~N 308 (561)
T COG5354 295 YMPASVSVFDLRGN 308 (561)
T ss_pred ccccceeecccccc
Confidence 88888888887644
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.047 Score=52.36 Aligned_cols=187 Identities=12% Similarity=0.118 Sum_probs=110.3
Q ss_pred EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC---CC-c-EEEEeCCCeEEEEeCCCCCCcceeehhhhccc
Q 044557 156 LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD---DG-D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHN 230 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~---~~-~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~ 230 (362)
+||++.-.|.|.+||......+..+. .|.+++..++|-+ +. . +++-.....+.+|+..+|.+..+ .....
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk----~~ys~ 155 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK----YDYSH 155 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec----cccCC
Confidence 57777778999999998877666664 6788899999854 33 2 55666778999999998864322 22234
Q ss_pred cceeEEEEec-CCCEEEEEcCCCcEEEEeccCC---C---CcEEEEEeecC-------------ccc------ee---EE
Q 044557 231 SGINALALSC-DGSVLYSGACDRSIIVWEKEED---D---GNILVVGALRG-------------HTK------SI---LC 281 (362)
Q Consensus 231 ~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~---~---~~~~~~~~~~~-------------h~~------~v---~~ 281 (362)
....++.+.| |.+++..-+..|.+.+-+.... . .++++...... ++. .+ ..
T Consensus 156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~ 235 (1062)
T KOG1912|consen 156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ 235 (1062)
T ss_pred cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence 5567788888 6777777777787766654211 1 11111111000 000 01 12
Q ss_pred EEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 282 MAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 282 ~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
++|++. .++-..--+.+.++|.+- ..++...---.+.+.-+.+.|+..+ ..|...=.||.+-+|--
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~--~~~l~vvpier~~akfv~vlP~~~r-------d~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEY--ECCLAVVPIERGGAKFVDVLPDPRR-------DALFCLHSNGRLTIRVR 303 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchh--hceeEEEEeccCCcceeEeccCCCc-------ceEEEEecCCeEEEEEe
Confidence 233432 122223345677777432 2334443333445555666666543 35777888999999864
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0008 Score=37.95 Aligned_cols=32 Identities=38% Similarity=0.538 Sum_probs=29.1
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
..|...|.++.+++++.++++++.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45778899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.028 Score=40.73 Aligned_cols=103 Identities=20% Similarity=0.277 Sum_probs=65.3
Q ss_pred eeEEEEec---CC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEEEeeCCCcEEEeeCCCCc
Q 044557 233 INALALSC---DG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 233 v~~i~~s~---~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~D~~i~~W~~~~~~ 307 (362)
|+++++.. || ..|++|+.|..||+|+-++ .+..+. .+..|.++... +..++-+.++|+|-+|+...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCccee
Confidence 56666554 33 5899999999999997542 233333 35667777664 5689999999999999743332
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
+ ..+. +..+.++++..-. .++-..|++|=.+|.|-
T Consensus 75 W----RiKS-K~~~~~~~~~D~~-----gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 W----RIKS-KNQVTSMAFYDIN-----GDGVPELIVGWSNGKVE 109 (111)
T ss_pred e----eecc-CCCeEEEEEEcCC-----CCCceEEEEEecCCeEE
Confidence 2 2332 2236666654321 12334577887778764
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.01 Score=53.88 Aligned_cols=158 Identities=13% Similarity=0.154 Sum_probs=95.3
Q ss_pred CcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc----------
Q 044557 184 HDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS---------- 253 (362)
Q Consensus 184 h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~---------- 253 (362)
..-++..+++||.|.++....-..|.+|.-..... +.. -....|..+.|+|.+++|.+-+....
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~---l~~---~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAK---LVR---FRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhh---eee---eecCCceecccCcccceeeeeccCCccChhhccCCc
Confidence 34578889999999966666666789997554431 211 12456899999999999998865544
Q ss_pred -----EEEEeccCCCCcEEEEEeecCccce-----eEEEEEeCCeEEEeeCCCcEEEeeCCCCce--eeeeEecCCCCcE
Q 044557 254 -----IIVWEKEEDDGNILVVGALRGHTKS-----ILCMAVVSDLVCSGSADKTIRIWRGIDRNY--TCLAVLEGHRGPV 321 (362)
Q Consensus 254 -----i~~wd~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~--~~~~~l~~h~~~v 321 (362)
+.+||..++. ++..+.+-..+ +..+..+..+.|=. ....++++++ ..+. ...+.|. ...|
T Consensus 105 ~~~n~~~vwd~~sg~----iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi 176 (561)
T COG5354 105 TSKNNVFVWDIASGM----IVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGI 176 (561)
T ss_pred cccCceeEEeccCce----eEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--ccce
Confidence 8889887643 34444444433 33333333343322 2245888874 2222 1223333 4568
Q ss_pred EEEEeeecCCccCCCCCceEEE--ecCCCCcEEEEecccC
Q 044557 322 KCLAAAIDNDRCDSSDTSYLVC--SGSLDCDIKVWQISFP 359 (362)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~--s~s~D~~i~~W~~~~~ 359 (362)
...+++|.+++ +.-.+++ ....++.+++|.+...
T Consensus 177 ~dFsisP~~n~----~~la~~tPEk~~kpa~~~i~sIp~~ 212 (561)
T COG5354 177 LDFSISPEGNH----DELAYWTPEKLNKPAMVRILSIPKN 212 (561)
T ss_pred eeEEecCCCCC----ceEEEEccccCCCCcEEEEEEccCC
Confidence 88888887643 1111111 2578899999998744
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.17 Score=45.08 Aligned_cols=180 Identities=13% Similarity=0.169 Sum_probs=98.3
Q ss_pred CcEEEEECCCc-----eEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 164 RTIKIWRTSDF-----KCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 164 ~~i~iwd~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
|.|.++++... +..........++|.+++-. ++.++ ++.++.|.+|++.... ++... ..+..++...+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv-~~~g~~l~v~~l~~~~---~l~~~-~~~~~~~~i~sl 135 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLV-VAVGNKLYVYDLDNSK---TLLKK-AFYDSPFYITSL 135 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEE-EEETTEEEEEEEETTS---SEEEE-EEE-BSSSEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEE-EeecCEEEEEEccCcc---cchhh-heecceEEEEEE
Confidence 88999998873 22221222356789998866 45544 4446899999987654 12111 112233333344
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCC--------C-c
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGID--------R-N 307 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~--------~-~ 307 (362)
...+.+++.|.....+.++........+..+.. ......++++.+- .+.++.+..+|.+.++.... . .
T Consensus 136 ~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~ 214 (321)
T PF03178_consen 136 SVFKNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPK 214 (321)
T ss_dssp EEETTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTB
T ss_pred eccccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccccc
Confidence 444669999999888888866543333444443 2335567777775 34899999999999997531 1 2
Q ss_pred eeeeeEecCCCCcEEEE---EeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 308 YTCLAVLEGHRGPVKCL---AAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~---~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
......+. ..+.|+++ .+.|. ...........++-++.+|.|-
T Consensus 215 L~~~~~f~-lg~~v~~~~~~~l~~~-~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 215 LERISSFH-LGDIVNSFRRGSLIPR-SGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp EEEEEEEE--SS-EEEEEE--SS---SSSS-TTEEEEEEEEETTS-EE
T ss_pred ceeEEEEE-CCCccceEEEEEeeec-CCCCcccccceEEEEecCCEEE
Confidence 33333443 34567776 43332 1000000123355566788876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.029 Score=53.68 Aligned_cols=147 Identities=13% Similarity=0.205 Sum_probs=99.1
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-----------c--EEEEeCCCeEEEE
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-----------D--VYTGSADKKIKVW 211 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-----------~--~~s~~~dg~i~iw 211 (362)
-.++.|+|.|- +|-|+ -..|.+-|..+.+.++.+. .|...|+.|.|.|.. . ++++.-.|.|.+|
T Consensus 18 ~~A~Dw~~~GL-iAygs-hslV~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 18 RNAADWSPSGL-IAYGS-HSLVSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred ccccccCccce-EEEec-CceEEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 45677888773 44343 5788899999988888775 688999999997631 2 4567778999999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEec---CC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSC---DG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-- 285 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~---~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-- 285 (362)
|...+. ..-.+..|..++..+.|-+ +. ..|+.-....++.+|+..+++..+ ..........|+.++
T Consensus 95 d~~~~s----~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W----k~~ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 95 DFVLAS----VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW----KYDYSHEILSCFRVDPF 166 (1062)
T ss_pred Eehhhh----hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee----ccccCCcceeeeeeCCC
Confidence 987654 2335566888999999876 33 467777778899999988765321 222222334556654
Q ss_pred -CCeEEEeeCCCcEEEee
Q 044557 286 -SDLVCSGSADKTIRIWR 302 (362)
Q Consensus 286 -~~~~~s~s~D~~i~~W~ 302 (362)
+..++.-+..|.+-+-+
T Consensus 167 d~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred CcceEEEEccCceEEEEe
Confidence 34454445556665554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.19 Score=43.72 Aligned_cols=152 Identities=18% Similarity=0.324 Sum_probs=87.2
Q ss_pred EEEecCCCEEEEEECC-----CcEEEEECC-CceEEEeeeccCcccEEEEEEcCCCc-EEEEe-------CCCeEEE---
Q 044557 148 LALTKDETLLYSVSWD-----RTIKIWRTS-DFKCLESITNAHDDAINAVALSDDGD-VYTGS-------ADKKIKV--- 210 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d-----~~i~iwd~~-~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-------~dg~i~i--- 210 (362)
-.|++||++|++.-.| |.|-|||.. +.+.+.++. .|.-....+.+.|+|+ |+.+. ..|..++
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 4689999999986544 789999998 667777665 3444455678899994 54431 1233333
Q ss_pred --------EeCCCCCCcceeehhh--hccccceeEEEEecCCCEEEEEcCCCc-------EEEEeccCCCCcEEEEEe--
Q 044557 211 --------WRRSPGNKKHSLVDVL--ERHNSGINALALSCDGSVLYSGACDRS-------IIVWEKEEDDGNILVVGA-- 271 (362)
Q Consensus 211 --------w~~~~~~~~~~~~~~~--~~h~~~v~~i~~s~~~~~l~s~~~d~~-------i~~wd~~~~~~~~~~~~~-- 271 (362)
-|..++....+. .+ ..|+..+.-+++.++|..++..-..|. +-+++... .+..+..
T Consensus 135 tM~psL~~ld~~sG~ll~q~--~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~ 209 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQV--ELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPE 209 (305)
T ss_pred hcCCceEEEecCCCceeeee--ecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCCh
Confidence 233333321111 12 347778888999988877665544332 12222111 1111110
Q ss_pred --ecCccceeEEEEEeCC--eE-EEeeCCCcEEEeeCCC
Q 044557 272 --LRGHTKSILCMAVVSD--LV-CSGSADKTIRIWRGID 305 (362)
Q Consensus 272 --~~~h~~~v~~~~~~~~--~~-~s~s~D~~i~~W~~~~ 305 (362)
+..-.+.+-+++++.+ .+ +|+=.-+.+-+||...
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 1112356778888754 44 5555678899998543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.21 Score=43.47 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=61.4
Q ss_pred EEEEecC-CCEEEEEECCC-cEEEEECCCceEEEeeeccCcc-cEEEEEEcCCCc-EEE-----EeCCCeEEEEeCCCCC
Q 044557 147 ALALTKD-ETLLYSVSWDR-TIKIWRTSDFKCLESITNAHDD-AINAVALSDDGD-VYT-----GSADKKIKVWRRSPGN 217 (362)
Q Consensus 147 ~~~~~~~-~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~h~~-~v~~v~~~~~~~-~~s-----~~~dg~i~iw~~~~~~ 217 (362)
.++.+|. ...++.+-.-| ...+||..+++....+.....- ..-.-+|+++|+ |++ .+..|.|-|||...+
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~- 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG- 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC-
Confidence 4555663 34455555554 4668898888776654321110 122357999998 444 244689999999733
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEE
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
...+..+..|.-.-..+.+.|||+.|+.+
T Consensus 88 --~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 88 --YRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred --cEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 23344455555566778899999888877
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.31 Score=45.24 Aligned_cols=93 Identities=10% Similarity=0.013 Sum_probs=54.6
Q ss_pred EEEecCCCEEEEEEC-CC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCC--------CeEEEEeCC
Q 044557 148 LALTKDETLLYSVSW-DR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSAD--------KKIKVWRRS 214 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~d--------g~i~iw~~~ 214 (362)
..|+|||+.|+-.+. .+ .|.+.|+.+++..+....+. . ...|+|+|+ ++ +.... ..|.+.|++
T Consensus 282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred cEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 469999987665553 33 57777887776533222111 1 247999997 43 33222 367777887
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcC
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~ 250 (362)
++.. ..+.. . .......|+|||+.|+....
T Consensus 358 ~g~~-~~LT~----~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 358 SDYI-RRLTA----N-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CCCe-EECCC----C-CCcCCeEECCCCCEEEEEEc
Confidence 6642 22221 1 12235789999998776554
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0032 Score=55.31 Aligned_cols=93 Identities=20% Similarity=0.274 Sum_probs=68.8
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG- 242 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~- 242 (362)
+++.+..+.+..+ +...|...|.+++|+|... +..++.+++|+|.|+++...... ...+ ..+.+++|.-|.
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss----y~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS----YIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh----eecc-CCceeeeeccCCc
Confidence 5555555555544 4456778899999999766 66789999999999987643322 2334 789999998765
Q ss_pred CEEEEEcCCCcEEEEeccCCCC
Q 044557 243 SVLYSGACDRSIIVWEKEEDDG 264 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~ 264 (362)
++|+.|-..|.|.+||++..++
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred ceeEEeccCceEEEEEccCCCc
Confidence 5677888899999999987554
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0066 Score=56.49 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=69.0
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEE-EEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcce
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN-AVALSDDGD-VYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~-~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
.+.-+.|+|.-.++|.+.++|.|-+..++ ++.+-++. -|...++ +++|.|||+ ++.|-.||+|++-|++++.....
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 35667899999999999999999999988 66665553 2555666 999999999 66788999999999998764333
Q ss_pred eehhhhccccceeEEEEec
Q 044557 222 LVDVLERHNSGINALALSC 240 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~ 240 (362)
. ...-..+|.++-|+|
T Consensus 100 ~---~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 F---LFSVETDISKGIWDR 115 (665)
T ss_pred c---ccccccchheeeccc
Confidence 1 112345677777753
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.35 Score=44.32 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=86.4
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec-------cCcccEEEEEEc-----CCCc----EEEEeC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN-------AHDDAINAVALS-----DDGD----VYTGSA 204 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------~h~~~v~~v~~~-----~~~~----~~s~~~ 204 (362)
..++|++++.+ |=-++|.|.++|.+.|.|++....+..-.. .....++++.|. .|+. ++.|..
T Consensus 85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 46899999986 556999999999999999998876654211 123457777775 3442 678899
Q ss_pred CCeEEEEeCCC-CCCcce--eehhhhccccceeEEE-EecC-----------------C---CEEEEEcCCCcEEEEecc
Q 044557 205 DKKIKVWRRSP-GNKKHS--LVDVLERHNSGINALA-LSCD-----------------G---SVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 205 dg~i~iw~~~~-~~~~~~--~~~~~~~h~~~v~~i~-~s~~-----------------~---~~l~s~~~d~~i~~wd~~ 260 (362)
.|.+.+|.+.. ...... .......+..+|..|. |..+ | ..++....+..+|++...
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~ 243 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP 243 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence 99999998753 221111 1122223556666554 3221 1 234444557789999876
Q ss_pred CCCCcEEEEEeecCccceeEEEEE-------eCCeEEEeeCCCcEEEeeC
Q 044557 261 EDDGNILVVGALRGHTKSILCMAV-------VSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 261 ~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~s~s~D~~i~~W~~ 303 (362)
+.+.. ...++ ....+..+.+ ....|+.-..||.|+++.+
T Consensus 244 ~~k~~---~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 244 KSKGA---HKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp ---EE---EEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred CCccc---ceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 54321 12222 1111222222 1236888889999999985
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.36 Score=44.24 Aligned_cols=208 Identities=13% Similarity=0.134 Sum_probs=108.9
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEE------------------------------------------Eeee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCL------------------------------------------ESIT 181 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~------------------------------------------~~~~ 181 (362)
.|+.+.|.++..-|++|...|.|-||.....+.. ..+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4678888888888999999999988864321000 0111
Q ss_pred ccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCccee-ehh---hhccccceeEEEEec-----CC---CEEEEEc
Q 044557 182 NAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL-VDV---LERHNSGINALALSC-----DG---SVLYSGA 249 (362)
Q Consensus 182 ~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~-~~~---~~~h~~~v~~i~~s~-----~~---~~l~s~~ 249 (362)
+...++|++++.|.=|.++.|..+|.+.|.|++........ +.. -......|+++.|+- |+ -.|++|.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 23467899999998888889999999999999754322210 011 111345678888862 33 3788999
Q ss_pred CCCcEEEEeccC-CCCcE--EEEEeecCccceeEEEEEe-C----------------------CeEEEeeCCCcEEEeeC
Q 044557 250 CDRSIIVWEKEE-DDGNI--LVVGALRGHTKSILCMAVV-S----------------------DLVCSGSADKTIRIWRG 303 (362)
Q Consensus 250 ~d~~i~~wd~~~-~~~~~--~~~~~~~~h~~~v~~~~~~-~----------------------~~~~s~s~D~~i~~W~~ 303 (362)
..|.+.+|.+.. ..+.+ ........+...|..+... . ..++....+..||+++.
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 999999998752 22211 1222222344555544421 0 12344445678999984
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.. .+..+......-....+.+.+-.. ...+..|+.--.||.|+++.++
T Consensus 243 ~~--~k~~~K~~~~~~~~~~~~vv~~~~----~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 243 PK--SKGAHKSFDDPFLCSSASVVPTIS----RNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp T-----EEEEE-SS-EEEEEEEEEEEE-----EEEEEEEEEEETTSEEEEEETT
T ss_pred CC--CcccceeeccccccceEEEEeecc----cCCceEEEEEECCCcEEEEECC
Confidence 32 233332222212223333432100 0123457777889999999874
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.072 Score=52.51 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=52.5
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRR 213 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~ 213 (362)
....|++-+.+| +||.|+.+|.||+||-- ++.-.+...+-..+|..|..+.||+.+.+..+..+.+++.
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 356788877776 68889999999999943 3333334445678999999999999777777778888875
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0027 Score=61.02 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=77.5
Q ss_pred EEEecCCCEEEEEE----CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee
Q 044557 148 LALTKDETLLYSVS----WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 148 ~~~~~~~~~l~s~s----~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.+|+|...+||.++ ..|.|.||- +++++.+.+..+ --+.+++|+|... ++.|-..|.+.+|...+.+ .
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e----~ 93 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE----T 93 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc--eehhhhccChHHHHHhhccccceeEEEecCCce----e
Confidence 46778888877776 347888873 445443333211 1246799999886 6778889999999865532 2
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
-.....|+.+|.-+.||++|..++++..-|.+.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 22345699999999999999999999999999999754
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.089 Score=50.74 Aligned_cols=186 Identities=8% Similarity=0.081 Sum_probs=92.0
Q ss_pred CCCEEEEEECC------CcEEEEECCCceEEEeeeccC-cccEEEEEEcCCCc-EEEEeCCC-----eEEEEeCCCCCCc
Q 044557 153 DETLLYSVSWD------RTIKIWRTSDFKCLESITNAH-DDAINAVALSDDGD-VYTGSADK-----KIKVWRRSPGNKK 219 (362)
Q Consensus 153 ~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~h-~~~v~~v~~~~~~~-~~s~~~dg-----~i~iw~~~~~~~~ 219 (362)
++.+.+.||.+ ..+..||..+..... +.... ...-.+++.. +|+ ++.||.++ .+..||..+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~-- 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDK-- 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEE-CCEEEEECCcCCCCCCceEEEEECCCCe--
Confidence 56666777754 347778877654321 11111 1111122223 455 45666553 47889876542
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCC-----------------------cEEEEeccCCCCcEEEEEeecCcc
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDR-----------------------SIIVWEKEEDDGNILVVGALRGHT 276 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-----------------------~i~~wd~~~~~~~~~~~~~~~~h~ 276 (362)
......+.........+ .-+|+..+.||.++ .+..||..++. +..+..+....
T Consensus 379 W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~~r 454 (557)
T PHA02713 379 WKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWTGT 454 (557)
T ss_pred EEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--EeecCCCCccc
Confidence 11111111111111122 23678888888653 36677766432 22333332111
Q ss_pred ceeEEEEEeCCeEEEeeCC------CcEEEeeCCC-CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCC
Q 044557 277 KSILCMAVVSDLVCSGSAD------KTIRIWRGID-RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC 349 (362)
Q Consensus 277 ~~v~~~~~~~~~~~s~s~D------~~i~~W~~~~-~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~ 349 (362)
.........+.+.+.|+.+ ..+..||... ..+..+..+.........+++ ++++.+.||.|+
T Consensus 455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-----------~~~iyv~Gg~~~ 523 (557)
T PHA02713 455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-----------DNTIMMLHCYES 523 (557)
T ss_pred ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-----------CCEEEEEeeecc
Confidence 1111223344455666643 2467788655 467777666544444433333 236778898888
Q ss_pred --cEEEEecc
Q 044557 350 --DIKVWQIS 357 (362)
Q Consensus 350 --~i~~W~~~ 357 (362)
++..+|..
T Consensus 524 ~~~~e~yd~~ 533 (557)
T PHA02713 524 YMLQDTFNVY 533 (557)
T ss_pred eeehhhcCcc
Confidence 56666653
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00056 Score=63.42 Aligned_cols=158 Identities=18% Similarity=0.274 Sum_probs=94.9
Q ss_pred eecCceeEEEEec-CCCEEEEEE----CCCcEEEEECCCc--eEEEee--eccCcccEEEEEEcCCCc-EEEEeCCCeEE
Q 044557 140 HHVDAVSALALTK-DETLLYSVS----WDRTIKIWRTSDF--KCLESI--TNAHDDAINAVALSDDGD-VYTGSADKKIK 209 (362)
Q Consensus 140 ~h~~~v~~~~~~~-~~~~l~s~s----~d~~i~iwd~~~~--~~~~~~--~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~ 209 (362)
+|....++++|++ |.++||+|= .|..+.|||+.++ .+.... .........+++|-.+.+ +++|...+.++
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 4566778888877 446676652 3457999999876 222221 111233456788876666 66888888999
Q ss_pred EEeCCCCCCcceeehhhhccccceeEEEEec-CCCEEEEEcCCCcEEEEec-cCCCCcEEE-EEeecCccceeEEEEEeC
Q 044557 210 VWRRSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEK-EEDDGNILV-VGALRGHTKSILCMAVVS 286 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~-~~~~~~~~~-~~~~~~h~~~v~~~~~~~ 286 (362)
++|+.... .....-....+..+.+.| .+.++++.. |+.|-+||. ..-+..++. +..-..-.+++..++|.+
T Consensus 180 ifdlRqs~-----~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 180 IFDLRQSL-----DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhhhhhhh-----hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEecc
Confidence 99986321 111111233566677888 677777666 999999993 221111110 000000123477888875
Q ss_pred C---eEEEeeCC-CcEEEeeC
Q 044557 287 D---LVCSGSAD-KTIRIWRG 303 (362)
Q Consensus 287 ~---~~~s~s~D-~~i~~W~~ 303 (362)
. .+++.+.| ++|++++.
T Consensus 254 trtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred CCcchhhhhccCcceEEEecc
Confidence 3 67777765 67889874
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0025 Score=61.53 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=67.5
Q ss_pred eecCceeEEEEecCCCEEEEEE-CCC-cEEEEECCC-ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVS-WDR-TIKIWRTSD-FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s-~d~-~i~iwd~~~-~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~ 215 (362)
.|..+|+-+.-+.+|..+.+.+ +.. ...+|++.+ +...+.+. .-.++.|+..-+ -+.|..-....+||+++
T Consensus 1141 cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1141 CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred ccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEeccc
Confidence 4666677777777777655443 333 567898764 33333333 234577876544 23344445788999999
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
..+..++....-+.+..-+...|+|+...++ .|| .+||.+.
T Consensus 1216 ~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1216 CSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred CcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeecc
Confidence 8766554332222333346778999888877 344 4788764
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.49 Score=43.73 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=37.9
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRS 214 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~ 214 (362)
.|+||+... +.+..+.-.+ +.+.++.|+.+..|+....||.+++||+.
T Consensus 62 ~I~iys~sG-~ll~~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSG-KLLSSIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCC-CEeEEEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 599998664 4455544333 78999999998889999999999999985
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0019 Score=62.34 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=82.9
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCC-eEEEEeCCC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADK-KIKVWRRSP 215 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg-~i~iw~~~~ 215 (362)
..|....+|++|+.+.++|+.|+..|.|+++++.++....... .|..+|+-+.-+.+|. ++ +++... -..+|+..+
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 3466789999999999999999999999999999998777664 8999999998887885 33 333333 567898754
Q ss_pred CCCcceeehhhhccc-cceeEEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 216 GNKKHSLVDVLERHN-SGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~-~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
... . .|. ..-.++.|+..-+.-+.|..-....+||.++..
T Consensus 1177 ~~~---~-----~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1177 TGG---P-----RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred ccC---c-----cccccccceeehhhhHHHHHhcccccceEEEecccCc
Confidence 211 1 122 233567787654444445444567899998754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.045 Score=53.02 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=59.1
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRS 214 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~ 214 (362)
+++++|+|..-+|+.|-+-|.+.+|...+.+. +++...|..+|..+.||++|. ++++..-|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCcee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 46789999988899999999999999877654 445568999999999999997 8899999999999765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.3 Score=45.38 Aligned_cols=137 Identities=13% Similarity=0.149 Sum_probs=75.4
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
....+.++|++++++.++ ||.-.|+.....+... .+.-...+|.+.+++++-...++|+|+.--......++
T Consensus 34 ~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~------~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i- 105 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA------FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSI- 105 (443)
T ss_dssp --SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE------EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT----
T ss_pred CCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc------cCceeEEEEecCccEEEEECCCeEEEEEcCccccceEE-
Confidence 467899999999998855 7888888755443322 22334577888888988888999999732222111111
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEe
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W 301 (362)
. .+..+..| .+ |..|...+.+ .|.+||.++.. .+..+.- ..|..+.|+++ +++-.+.| ++.++
T Consensus 106 ---~-~~~~~~~I--f~-G~LL~~~~~~-~i~~yDw~~~~----~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 106 ---K-LPFSVEKI--FG-GNLLGVKSSD-FICFYDWETGK----LIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp ------SS-EEEE--E--SSSEEEEETT-EEEEE-TTT------EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred ---c-CCcccceE--Ec-CcEEEEECCC-CEEEEEhhHcc----eeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 1 11122222 22 7877777655 79999998643 4444442 23788888854 66666654 77787
Q ss_pred eC
Q 044557 302 RG 303 (362)
Q Consensus 302 ~~ 303 (362)
+.
T Consensus 171 ~~ 172 (443)
T PF04053_consen 171 KY 172 (443)
T ss_dssp EE
T ss_pred Ee
Confidence 64
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.013 Score=55.33 Aligned_cols=112 Identities=11% Similarity=0.143 Sum_probs=79.4
Q ss_pred eEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE
Q 044557 71 VKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL 150 (362)
Q Consensus 71 v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 150 (362)
.++++...++++.|+.-|.+.+|+-..+.....+. .+..+.+.....
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~---------------------------------~~~~~~~~~~~v 84 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN---------------------------------EGATGITCVRSV 84 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccc---------------------------------cCccceEEEEEe
Confidence 44566667789999999999999754432211000 011233455677
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceE-----EEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCC
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKC-----LESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~-----~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~ 215 (362)
+++..++|.|+..|.|.++.++.... +......|...|++++|++++. +++|..-|+|..-.+++
T Consensus 85 s~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 85 SSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 89999999999999999998766322 1222334677899999999996 99999999999887765
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.8 Score=42.36 Aligned_cols=69 Identities=6% Similarity=0.045 Sum_probs=47.8
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEe
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWR 212 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~ 212 (362)
+++..|++||+++++|.-..+|.+.+....-.+.+..+...-......+.|+.+..++..- ...|.+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg 285 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVG 285 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEEC
Confidence 5789999999999999999999999987655555554443334456778888665433322 34555553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.024 Score=52.08 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=66.5
Q ss_pred ceeEEEEecCCCEEEEEEC-----------CCcEEEEECCCceEEEeeecc-CcccEE-EEEEcCCCcEEEEeCCCeEEE
Q 044557 144 AVSALALTKDETLLYSVSW-----------DRTIKIWRTSDFKCLESITNA-HDDAIN-AVALSDDGDVYTGSADKKIKV 210 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~-----------d~~i~iwd~~~~~~~~~~~~~-h~~~v~-~v~~~~~~~~~s~~~dg~i~i 210 (362)
.|.-+.|||+.+||+|=|. -..++|||+.+|...+.+... ....++ -..||-++++++.-.-..|.|
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisI 330 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISI 330 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEE
Confidence 4788999999999998662 257999999999877766421 112233 356898888766555578999
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 247 (362)
|+..+- .+...-.-.-.+|....|+|.+..||-
T Consensus 331 yEtpsf----~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 331 YETPSF----MLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EecCce----eeecccccCCccccCcccCCCcceEEE
Confidence 975432 122111112356777888888776663
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.9 Score=42.32 Aligned_cols=180 Identities=14% Similarity=0.166 Sum_probs=83.8
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
....|.+.+ .+|+-...+.|.|+.--+.+....+.... .+..+.. |.++....++.|.+||++++....++
T Consensus 72 ~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~~--~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i--- 142 (443)
T PF04053_consen 72 LSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLPF--SVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRI--- 142 (443)
T ss_dssp SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----SS---EEEEE----SSSEEEEETTEEEEE-TTT--EEEEE---
T ss_pred eEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCCc--ccceEEc---CcEEEEECCCCEEEEEhhHcceeeEE---
Confidence 456677744 46666668899997422222222333221 2344432 77665556669999999887543322
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCC-------C---CcEEEEEeecCccceeEEEEEeCCe-EEEeeC
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEED-------D---GNILVVGALRGHTKSILCMAVVSDL-VCSGSA 294 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~-------~---~~~~~~~~~~~h~~~v~~~~~~~~~-~~s~s~ 294 (362)
. -.+|..+.|+++|.+++..+.+ .+.+++.... + .....+.. -..+|.+..|.++. +.|...
T Consensus 143 -~--v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d~fiYtT~~ 215 (443)
T PF04053_consen 143 -D--VSAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVEDCFIYTTSN 215 (443)
T ss_dssp -S--S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETTEEEEE-TT
T ss_pred -e--cCCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEcCEEEEEcCC
Confidence 1 2348999999999999998866 5666654321 0 01222221 24567888888874 344443
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.++.+- ......++.+ ..++.=+...++.+ .|.....|+.|..+.++
T Consensus 216 --~lkYl~--~Ge~~~i~~l---d~~~yllgy~~~~~---------~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 216 --HLKYLV--NGETGIIAHL---DKPLYLLGYLPKEN---------RLYLIDRDGNVISYELD 262 (443)
T ss_dssp --EEEEEE--TTEEEEEEE----SS--EEEEEETTTT---------EEEEE-TT--EEEEE--
T ss_pred --eEEEEE--cCCcceEEEc---CCceEEEEEEccCC---------EEEEEECCCCEEEEEEC
Confidence 777653 2233334433 23444444443221 24455677888777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.016 Score=35.03 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=27.7
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
..|.+++|+|...+||.++.||.|.+|+++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 468899999999999999999999999983
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.13 Score=47.54 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=76.0
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-----------CCCeEEEEe
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS-----------ADKKIKVWR 212 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-----------~dg~i~iw~ 212 (362)
-+-+.|||-|.||+|-= -.-|.+|--++...++.+. |. .|.-+.|||..+ |+|-+ ....+.|||
T Consensus 213 etyv~wSP~GTYL~t~H-k~GI~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFH-KQGIALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeEEecCCceEEEEEe-ccceeeecCccHHHHHhcc--CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 35688999999999865 4668899877776666664 53 578889999886 65532 225799999
Q ss_pred CCCCCCcceeehhhhccccce-eEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 213 RSPGNKKHSLVDVLERHNSGI-NALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v-~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
+.+|....++. .+.. +..+ .-..||.|++++|--.. +.|.+|+..
T Consensus 289 I~tG~lkrsF~-~~~~-~~~~WP~frWS~DdKy~Arm~~-~sisIyEtp 334 (698)
T KOG2314|consen 289 IATGLLKRSFP-VIKS-PYLKWPIFRWSHDDKYFARMTG-NSISIYETP 334 (698)
T ss_pred ccccchhccee-ccCC-CccccceEEeccCCceeEEecc-ceEEEEecC
Confidence 99987544332 2221 2222 34689999999987666 468888754
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.41 Score=41.50 Aligned_cols=148 Identities=12% Similarity=0.128 Sum_probs=83.4
Q ss_pred cCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeeh-------
Q 044557 152 KDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD------- 224 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~------- 224 (362)
..++.|+.|+++| +.+++.........+. +...|..+...|+-.++..-.|+.+.++++..-........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccc
Confidence 3567888999888 8999983332222222 23348999988877655555679999999875433221000
Q ss_pred ---hhhccccceeEEE--EecCCCEEEEEcCCCcEEEEeccCCCCcE-EEEEeecCccceeEEEEEeCCeEEEeeCCCcE
Q 044557 225 ---VLERHNSGINALA--LSCDGSVLYSGACDRSIIVWEKEEDDGNI-LVVGALRGHTKSILCMAVVSDLVCSGSADKTI 298 (362)
Q Consensus 225 ---~~~~h~~~v~~i~--~s~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i 298 (362)
..-.....+...+ -...+...+.......|.+|......... .....+. -...+.++.|.++.++.|..++ .
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~-f 159 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKICVGTSKG-F 159 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEEEEEeCCc-e
Confidence 0001122344444 11344444445555688888876542222 2233332 2356778888888777776544 4
Q ss_pred EEeeCC
Q 044557 299 RIWRGI 304 (362)
Q Consensus 299 ~~W~~~ 304 (362)
.+-+..
T Consensus 160 ~~idl~ 165 (275)
T PF00780_consen 160 YLIDLN 165 (275)
T ss_pred EEEecC
Confidence 455543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.44 Score=46.13 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=77.4
Q ss_pred CceeEEEEecCCCEEEEEE------CCCc--EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC--------
Q 044557 143 DAVSALALTKDETLLYSVS------WDRT--IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-------- 205 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s------~d~~--i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-------- 205 (362)
..+...+++|+++.++..- .|.. |.+++... .. ..+..+. ....-.|+|+|. +++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 3567888999999876655 2444 44445422 22 2232222 255667999865 5544322
Q ss_pred ----CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC-CCCcEEEEE--ee-cCccc
Q 044557 206 ----KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE-DDGNILVVG--AL-RGHTK 277 (362)
Q Consensus 206 ----g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~--~~-~~h~~ 277 (362)
+.+.+..++.+... . .....|..+.|||||..|+.-. ++.|.+--+.. ..+...+.. .+ .+-..
T Consensus 426 ~~~~gql~~~~vd~ge~~-----~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 426 DPATGQLARTPVDASAVA-----S--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred cCCCceEEEEeccCchhh-----h--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 22222233222110 0 2345799999999999888655 46666632221 122222211 11 11222
Q ss_pred eeEEEEEeCC-eEEEeeCCCcEEEeeC
Q 044557 278 SILCMAVVSD-LVCSGSADKTIRIWRG 303 (362)
Q Consensus 278 ~v~~~~~~~~-~~~s~s~D~~i~~W~~ 303 (362)
.+..+.|.++ .|+.+..+....+|.+
T Consensus 498 ~~~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 498 TAVSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred ccccceEecCCEEEEEecCCCCceEEE
Confidence 3466778654 4555555555566753
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.022 Score=53.12 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=56.3
Q ss_pred ccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccccee-EEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 186 DAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN-ALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 186 ~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~-~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
..+.-+.|+|.-. +|.+..+|.|.+..+.- . .+.++.-|..+++ +++|.|||+.|+.|-.||+|++-|.+.+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-q----Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW-Q----RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc-c----eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 3567788999876 67888999888876652 1 1233444566666 99999999999999999999999998643
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.02 Score=46.84 Aligned_cols=103 Identities=16% Similarity=0.252 Sum_probs=62.6
Q ss_pred CCEEEEEECCCcEEEEECCCceEE-EeeeccCcccEEE-EEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccc
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCL-ESITNAHDDAINA-VALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHN 230 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~h~~~v~~-v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~ 230 (362)
+.-+++|+.||.|.+|+....-.+ ..+.... ..|.+ +..-.++. ..+++.||.|+.|+...... ......|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~-e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~----~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE-ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV----LGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhccc-ccceeccccccccceeEEeccCCceeeeccccCce----eeeecccc
Confidence 456888999999999987632111 1111111 12222 22223333 56889999999998876542 22233455
Q ss_pred -cceeEEEEecCCCEEEEE--cCCCcEEEEeccC
Q 044557 231 -SGINALALSCDGSVLYSG--ACDRSIIVWEKEE 261 (362)
Q Consensus 231 -~~v~~i~~s~~~~~l~s~--~~d~~i~~wd~~~ 261 (362)
.++.....+..+..|..+ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 556666666667777777 7888888888754
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.81 Score=38.96 Aligned_cols=186 Identities=12% Similarity=0.118 Sum_probs=99.4
Q ss_pred cCceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCc
Q 044557 142 VDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKK 219 (362)
Q Consensus 142 ~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~ 219 (362)
...+..++|+|+.+ ++++....+.|...+. +++.++.+...-.+....|++..++.++... .++.+.++++......
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 34589999999866 5555566678877776 4677777654444568899998888866655 4888988887433211
Q ss_pred c------eee-hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC--CCCcEEEEEeecC------ccceeEEEEE
Q 044557 220 H------SLV-DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE--DDGNILVVGALRG------HTKSILCMAV 284 (362)
Q Consensus 220 ~------~~~-~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~------h~~~v~~~~~ 284 (362)
. ++. .....++..+-.++|.|.++.|+.+-...-..+|.+.. ...... ...... ....+..+++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF-VSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E-EEE-HHHH-HT--SS---EEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee-eccccccccccceeccccceEE
Confidence 1 111 11123556788999999988888887777677777653 222221 111111 2233567777
Q ss_pred eCC---eEEEeeCCCcEEEeeCCCCceeeeeEecC-C------CCcEEEEEeeecC
Q 044557 285 VSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEG-H------RGPVKCLAAAIDN 330 (362)
Q Consensus 285 ~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~-h------~~~v~~~~~~~~~ 330 (362)
.+. +++-+.+.+.+-..|... .....-.|.+ . -..--.++|.+++
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred cCCCCeEEEEECCCCeEEEECCCC-CEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 653 777788888888888322 2222223332 1 1246677776543
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.024 Score=46.41 Aligned_cols=135 Identities=17% Similarity=0.202 Sum_probs=72.6
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEc-CCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcccccee-EE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS-DDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN-AL 236 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~-~i 236 (362)
..+.|+.|+-++++..+.--.-...|..- .... -+..++.|+.+|.|.+|...-... .......-...|- -|
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~---~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGA---HSDRVCSGEESIDLGI 108 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccch---HHHhhhcccccceecc
Confidence 34667888887766433211000112111 1111 123488999999999997652111 1111111112222 22
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEE--eCCeEEEe--eCCCcEEEeeC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAV--VSDLVCSG--SADKTIRIWRG 303 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~--~~~~~~s~--s~D~~i~~W~~ 303 (362)
..-.++.+..+++.||.||.|+..... .++....|+ ..+..... +..+++.+ |.|..++.|++
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k----~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNK----VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCc----eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 223356689999999999999987543 233344455 33333333 33466676 88888888875
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.96 E-value=1 Score=39.54 Aligned_cols=154 Identities=11% Similarity=0.143 Sum_probs=74.7
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCC--ceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCC-CCC
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSD--FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSP-GNK 218 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~-~~~ 218 (362)
...+..+..++|++++++++.-..+.-||... .+... ..-...|..|.|.|++.+...+..|.|+.=+... .+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~---r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN---RNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGET 220 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc---cCccceehhceecCCCCEEEEeCCcEEEEccCCCCccc
Confidence 35677888899999998887666667887543 23322 2345689999999999887777888888765211 110
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEEEeeCCCc
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVCSGSADKT 297 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~D~~ 297 (362)
-...+..+......+..++|.+++...++|+. |.+ +.+...+ ...........-...+..+.|. ++.-..-+.||.
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGG-KTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTT-SS-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCC-ccceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence 00000111122334788899988777666654 444 3333322 2222221111223345666664 455556667776
Q ss_pred EEEe
Q 044557 298 IRIW 301 (362)
Q Consensus 298 i~~W 301 (362)
+.-|
T Consensus 298 ll~~ 301 (302)
T PF14870_consen 298 LLRY 301 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6544
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.57 Score=45.29 Aligned_cols=187 Identities=12% Similarity=0.164 Sum_probs=95.1
Q ss_pred CCCEEEEEECCC------cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCC------CeEEEEeCCCCCCcc
Q 044557 153 DETLLYSVSWDR------TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSAD------KKIKVWRRSPGNKKH 220 (362)
Q Consensus 153 ~~~~l~s~s~d~------~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~d------g~i~iw~~~~~~~~~ 220 (362)
.+.+++.||.++ .+..||..+................++++..+.-+++|+.| ..+..||.....-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W-- 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW-- 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce--
Confidence 355677787773 67788887764333222222333445555544346788888 3577788765431
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCc-----EEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRS-----IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD 295 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~-----i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D 295 (362)
.....+.......... .-+|...++||.||. |-.||..+++ +..+..+.......-...+.+.+.+.|+.|
T Consensus 362 ~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred eccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCc--ccccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence 1111122111111111 237889999999975 5567765432 222332322122222333445677777755
Q ss_pred C------cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc-----EEEEec
Q 044557 296 K------TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD-----IKVWQI 356 (362)
Q Consensus 296 ~------~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~-----i~~W~~ 356 (362)
+ ++..||-....+..+..+.--..... ++.. ++++.+.||.|+. |..+|.
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~----------~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL----------NGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccce-EEEE----------CCEEEEECCccCCCccceEEEEcC
Confidence 4 34566654445554444432221111 2221 2356777777763 455554
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.28 Score=48.52 Aligned_cols=134 Identities=14% Similarity=0.167 Sum_probs=83.2
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC------CCcEEEEeCCCeEEEEeCCCCCCcceeeh---hhhcccc
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD------DGDVYTGSADKKIKVWRRSPGNKKHSLVD---VLERHNS 231 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~------~~~~~s~~~dg~i~iw~~~~~~~~~~~~~---~~~~h~~ 231 (362)
.....|.-.|++.++.+..+......+|..++-.. +...+.|-.++.+..||.+-... ++.. .......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--ceeeccccccccCC
Confidence 45578888899999999998754444455543221 12357788888999999875321 1211 0112344
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
..+|++-+.+ .+||.|+.+|.||+||... .. .-..+++-..+|..+..+.+ .++ +..+..+.|.+
T Consensus 579 ~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g-~~---AKT~lp~lG~pI~~iDvt~DGkwil-aTc~tyLlLi~ 645 (794)
T PF08553_consen 579 NFSCFATTED-GYIAVGSNKGDIRLYDRLG-KR---AKTALPGLGDPIIGIDVTADGKWIL-ATCKTYLLLID 645 (794)
T ss_pred CceEEEecCC-ceEEEEeCCCcEEeecccc-hh---hhhcCCCCCCCeeEEEecCCCcEEE-EeecceEEEEE
Confidence 5667765554 5889999999999999532 11 22245666788988888654 322 22234555554
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.54 E-value=2 Score=39.79 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=66.0
Q ss_pred eEEEEecCCCEEEEE-ECCC----cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeC----------CCeE
Q 044557 146 SALALTKDETLLYSV-SWDR----TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSA----------DKKI 208 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~-s~d~----~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~----------dg~i 208 (362)
....++|+++++|-+ +..| .|++.|+++++.+...... .....+.|.+++. ++ +... ...|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 356789999987754 4444 5999999999876543211 1123489999976 43 3321 3358
Q ss_pred EEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC----CcEEEEeccC
Q 044557 209 KVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD----RSIIVWEKEE 261 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d----~~i~~wd~~~ 261 (362)
..|++.+....-.++............+..++|+++|+..+.. ..+.+.++..
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 8888866533212322222222224567889999988754332 3466677665
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.3 Score=37.44 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=79.4
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeE-EEEEcCceeEEEecCCcEEEEecCCCCCCccccee
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVK-SLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~ 107 (362)
..+++.||..+.++--|..++...++.... ..+. +..+.+|.++.|+..|.+.+.+.++++... .+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg----------~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w-~f~- 90 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG----------VRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIW-NFV- 90 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC----------ceeeeeeEEECCEEEEEEccCcEEEEEecchhhee-eee-
Confidence 467888888888877776554332222211 1111 122357889999999999998887654210 000
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCcee-EEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcc
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVS-ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD 186 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~ 186 (362)
-.+.|- .....+++..++.|+.|++...-|..+..++-+.+-+- .
T Consensus 91 ---------------------------------~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG-~ 136 (354)
T KOG4649|consen 91 ---------------------------------ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG-G 136 (354)
T ss_pred ---------------------------------ehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC-c
Confidence 011111 12346788999999999999999999888876643221 1
Q ss_pred cEEEEEEcC-CCcEEEEeCCCeEEE
Q 044557 187 AINAVALSD-DGDVYTGSADKKIKV 210 (362)
Q Consensus 187 ~v~~v~~~~-~~~~~s~~~dg~i~i 210 (362)
...+=++.| ++.++.+...|.|.-
T Consensus 137 ~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 137 TFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred eeccceecCCCceEEEEeccceEEE
Confidence 111223344 444555555554433
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.55 Score=45.30 Aligned_cols=109 Identities=14% Similarity=0.182 Sum_probs=68.6
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEc--CCCc-EEEEeCCCeEEEEeCC-----CCCCcce
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS--DDGD-VYTGSADKKIKVWRRS-----PGNKKHS 221 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~--~~~~-~~s~~~dg~i~iw~~~-----~~~~~~~ 221 (362)
-+.-++..++-+....+.|||.+.+.......-...+.|.++.|. |+++ +++.+-.+.|.+|.-. ...+...
T Consensus 37 gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 37 GSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred ecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 334344444444445899999998774433322346789999985 7776 8889999999998532 1111111
Q ss_pred eehh--hhccc-cceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 222 LVDV--LERHN-SGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 222 ~~~~--~~~h~-~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
.+.. +..|. .+|.+..|.++|..++.+| +.+.++|..
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 1111 12232 5788999999998877664 578888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.0039 Score=60.34 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=27.6
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG 197 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~ 197 (362)
|..+-|-++.-++..+-.++.|++-..++-.. .+...|...+..++|...|
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhc
Confidence 33444455555666666677777765543221 2333576666666554443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.52 Score=42.96 Aligned_cols=104 Identities=14% Similarity=0.200 Sum_probs=55.6
Q ss_pred CCcEEEEECCCceEEEeeeccCcc-cEEEEEEcC--CCc--EEEEeCCCeEEEEeC-CCCCCcc-eeeh-----------
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDD-AINAVALSD--DGD--VYTGSADKKIKVWRR-SPGNKKH-SLVD----------- 224 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~-~v~~v~~~~--~~~--~~s~~~dg~i~iw~~-~~~~~~~-~~~~----------- 224 (362)
-+++.+||+.+.+.++++..+.++ ....|.|.. +.. ++.+....+|..|-. +.+.-.. +.+.
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 368999999999999998876544 456788753 332 555555556655533 2221000 0110
Q ss_pred -----hhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccCCCCcE
Q 044557 225 -----VLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEEDDGNI 266 (362)
Q Consensus 225 -----~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~~~~~~ 266 (362)
.+..-..-|+.|.+|.|.++|+... .+|.||.||+.......
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence 0111123478999999999998666 69999999998765443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.072 Score=53.00 Aligned_cols=101 Identities=14% Similarity=0.212 Sum_probs=67.1
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccc
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS 231 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~ 231 (362)
.+..++.|+.-|.+-..|+...-..-.....-.++|.+++|+.+|. ++.|-.+|.|.+||...+... ..+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l----~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL----KVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce----eeeeecCC
Confidence 3456888888889988887653111011122356899999999998 556778999999999775433 23334444
Q ss_pred cee---EEEEecCCCEEEEEcCCCcEEEEec
Q 044557 232 GIN---ALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 232 ~v~---~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
+++ .+.+..++..++++..-|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 444 3445567778888887775 5653
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.1 Score=43.11 Aligned_cols=95 Identities=17% Similarity=0.085 Sum_probs=56.4
Q ss_pred CCeEEEEeCCC----CCCcceeehhhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccCCCC--------cEEEEEe
Q 044557 205 DKKIKVWRRSP----GNKKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEEDDG--------NILVVGA 271 (362)
Q Consensus 205 dg~i~iw~~~~----~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~~~~--------~~~~~~~ 271 (362)
++.|.+.|..+ +......+. -......+.++|||+++++++ .+++|.+.|+.+... .-.+...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP----VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP----VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE----CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 45677777765 211111111 123456789999999888666 589999999875321 0112222
Q ss_pred ecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 272 ~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
.+- ....+..+|+++ .+.|-..|..|--|++.
T Consensus 371 vev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 371 PEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ecc-CCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 211 122345566544 67788889999999853
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.057 Score=32.63 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=27.8
Q ss_pred ccceeEEEEecCCCEEEEEcCCCcEEEEec
Q 044557 230 NSGINALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 230 ~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
..+|..++|+|....||.+..||.|.+|.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 457999999999999999999999999987
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.31 Score=46.62 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=61.9
Q ss_pred CcEEEEECCC-----ceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCc--------ceeehhhhc
Q 044557 164 RTIKIWRTSD-----FKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKK--------HSLVDVLER 228 (362)
Q Consensus 164 ~~i~iwd~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~--------~~~~~~~~~ 228 (362)
+.|.+.|..+ .+.+..+. -......+.++|||+ ++++..+.+|.|.|++..... ..+.....-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 4577777766 33444332 233567899999998 446677999999998764310 011111111
Q ss_pred cccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 229 h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
...-...+|.++|....|-..|.+|..|++..
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22233568889998888889999999999764
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.94 Score=43.83 Aligned_cols=177 Identities=15% Similarity=0.240 Sum_probs=90.5
Q ss_pred CCCEEEEEECC------CcEEEEECCCceEEE--eeeccCcccEEEEEEcCCCc-EEEEeCCC-----eEEEEeCCCCCC
Q 044557 153 DETLLYSVSWD------RTIKIWRTSDFKCLE--SITNAHDDAINAVALSDDGD-VYTGSADK-----KIKVWRRSPGNK 218 (362)
Q Consensus 153 ~~~~l~s~s~d------~~i~iwd~~~~~~~~--~~~~~h~~~v~~v~~~~~~~-~~s~~~dg-----~i~iw~~~~~~~ 218 (362)
++.+.++||.| .++..||....+... .+.... .=.+++.. +|. ++.|+.|| +|..||..+.+-
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R--~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR--SDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc--ccceeEEE-CCEEEEEeccccccccccEEEecCCCCcc
Confidence 45777888888 356677876655322 111110 01122222 455 56788886 477787765431
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCCc------EEEEeccCCCCcEEEEEeecCccceeEEEEE-eCCeEEE
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRS------IIVWEKEEDDGNILVVGALRGHTKSILCMAV-VSDLVCS 291 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~------i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~s 291 (362)
.....+......... ..-+|...++||.|+. +..||..++. +..+..+..-... ..++. .+.+++.
T Consensus 409 --~~va~m~~~r~~~gv--~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~-~g~a~~~~~iYvv 481 (571)
T KOG4441|consen 409 --TPVAPMLTRRSGHGV--AVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSG-FGVAVLNGKIYVV 481 (571)
T ss_pred --cccCCCCcceeeeEE--EEECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCccccccc-ceEEEECCEEEEE
Confidence 111111111111111 2237888888886654 5667765432 2223222221121 22333 3446677
Q ss_pred eeCCC-----cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc
Q 044557 292 GSADK-----TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD 350 (362)
Q Consensus 292 ~s~D~-----~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~ 350 (362)
|+.|+ +|..+|....++..+..+....+.+...+. ++.+.+.|+.||.
T Consensus 482 GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~-----------~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 482 GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL-----------GGKLYAVGGFDGN 534 (571)
T ss_pred CCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE-----------CCEEEEEecccCc
Confidence 77665 377788666666666555544444433332 2345667777775
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.13 Score=46.49 Aligned_cols=93 Identities=15% Similarity=0.070 Sum_probs=56.4
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh-------------hcc
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL-------------ERH 229 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~h 229 (362)
.+.+.|||+++++...... . ...+....|+|+|..++-..++.|.+++..++.. ..+...- ++-
T Consensus 22 ~~~y~i~d~~~~~~~~l~~-~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP-P-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEETTTTEEEESS--E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE-EESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEecCCCceEECcC-C-ccccccceeecCCCeeEEEecCceEEEECCCCCe-EEeccccceeEEcCccceecccc
Confidence 3678899999876544222 2 4567788999999977777789999998765521 1121100 000
Q ss_pred -ccceeEEEEecCCCEEEEEcCC-CcEEEEe
Q 044557 230 -NSGINALALSCDGSVLYSGACD-RSIIVWE 258 (362)
Q Consensus 230 -~~~v~~i~~s~~~~~l~s~~~d-~~i~~wd 258 (362)
-..-..+.|||||++|+....| ..|+.+.
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred ccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 1123568999999999877654 3444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.73 Score=44.55 Aligned_cols=70 Identities=1% Similarity=0.007 Sum_probs=41.2
Q ss_pred cCCCEEEEEcCCC------cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCC--cEEEeeCCCCceee
Q 044557 240 CDGSVLYSGACDR------SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADK--TIRIWRGIDRNYTC 310 (362)
Q Consensus 240 ~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~--~i~~W~~~~~~~~~ 310 (362)
-+|+..+.||.++ .+..||.++. ..+..+..++......-...+.+.+.+.|+.|+ ++..||....++..
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTY-NGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCC-CCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccccccc
Confidence 3677777777652 3567887651 124444455443333334445566788888888 67777765555543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.54 E-value=4.4 Score=38.52 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=80.0
Q ss_pred EEEecCCCEEEEEECCC------------------cEEEEECCCceEEEeeeccCcc-----cEEEEEEc----CCC---
Q 044557 148 LALTKDETLLYSVSWDR------------------TIKIWRTSDFKCLESITNAHDD-----AINAVALS----DDG--- 197 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~------------------~i~iwd~~~~~~~~~~~~~h~~-----~v~~v~~~----~~~--- 197 (362)
.++.+.+..++.++.|+ .|.-.|.++++.+-.....+.. ......+. -++
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 34455556666676554 6888899888876554322111 00000111 122
Q ss_pred -cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE------------------cCCCcEEEEe
Q 044557 198 -DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG------------------ACDRSIIVWE 258 (362)
Q Consensus 198 -~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~------------------~~d~~i~~wd 258 (362)
.++.++.+|.+...|..+++..-+.... ...++.+| ..++.+ ..+|.+...|
T Consensus 302 ~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 302 PAIVHAPKNGFFYVLDRTTGKLISARPEV-------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred EEEEEECCCceEEEEECCCCcEeeEeEee-------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 2667888999999999988754322110 01122233 223222 2356677777
Q ss_pred ccCCCCcEEEEEeecCcc------cee--EEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEe
Q 044557 259 KEEDDGNILVVGALRGHT------KSI--LCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~------~~v--~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l 314 (362)
+.+++..... ....+. ... ..+...++.+..++.||.+..+|.. +++.+.+.
T Consensus 373 ~~tG~~~W~~--~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~--tG~~lW~~ 432 (488)
T cd00216 373 PKTGKVVWEK--REGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDAT--TGKELWKF 432 (488)
T ss_pred CCCCcEeeEe--eCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECC--CCceeeEE
Confidence 7654422111 111110 011 1234556788888999999999853 34444443
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.65 Score=43.04 Aligned_cols=124 Identities=18% Similarity=0.186 Sum_probs=77.8
Q ss_pred CCCE-EEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcE--------EEEeCCCeEEEEeCCCCCCcceee
Q 044557 153 DETL-LYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDV--------YTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 153 ~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~--------~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
+.++ |.++.....++=-|++.++.+..+.. +. .|+-+.+.|+.++ +.|-.|+.|.-||..-.... .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~-~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKF-ED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeec-cC-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcc--ee
Confidence 3444 44455556777779999999998863 33 3777788887642 45667888999997643321 11
Q ss_pred hhhhccc----cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe
Q 044557 224 DVLERHN----SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 224 ~~~~~h~----~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 285 (362)
...+.|+ ....|++-.. ..+|+.||.+|.||+||... .. .-..+++-...|..+..+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~-~~---AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIG-RR---AKTALPGLGDAIKHVDVT 480 (644)
T ss_pred eeeeccccccccccceeeecC-CceEEEeecCCcEEeehhhh-hh---hhhcccccCCceeeEEee
Confidence 1222232 2344544443 45899999999999999732 21 122466777778777664
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=5.1 Score=38.05 Aligned_cols=185 Identities=9% Similarity=0.025 Sum_probs=84.8
Q ss_pred cCCCEEEEEECCC-----cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC--CeEEEEeCCCCCCcceee
Q 044557 152 KDETLLYSVSWDR-----TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD--KKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 152 ~~~~~l~s~s~d~-----~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d--g~i~iw~~~~~~~~~~~~ 223 (362)
.++.+++.||.++ .+..||..+.+....-.......-.+++. -++. ++.|+.+ ..+..||..+.. -...
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~--W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAA--WVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCe--EEEC
Confidence 3455667777553 46678877655332111111111112222 2566 4556643 357788865432 1111
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCC---cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEE
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDR---SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRI 300 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~ 300 (362)
..+....... ....-+|+..+.||.++ .+..||..++ .+.....+...........+.+.+.+.|+ .+.+
T Consensus 347 ~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ 419 (480)
T PHA02790 347 PSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEF 419 (480)
T ss_pred CCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceEEEECCEEEEECC---ceEE
Confidence 1121111111 12233778778888654 4667876542 22222222211111122233444555553 4677
Q ss_pred eeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCC-----CcEEEEecc
Q 044557 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD-----CDIKVWQIS 357 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D-----~~i~~W~~~ 357 (362)
|+.....+..+..+..-..... ++.. ++++.+.||.+ .++..+|..
T Consensus 420 ydp~~~~W~~~~~m~~~r~~~~-~~v~----------~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 420 YCESSNTWTLIDDPIYPRDNPE-LIIV----------DNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred ecCCCCcEeEcCCCCCCccccE-EEEE----------CCEEEEECCcCCCcccceEEEEECC
Confidence 8866666665554432122222 2221 12456667654 346677764
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=5.7 Score=38.27 Aligned_cols=153 Identities=7% Similarity=0.069 Sum_probs=67.9
Q ss_pred cCCCEEEEEECCC------cEEEEECCCceEEEeeecc-CcccEEEEEEcCCCc-EEEEeCC-----CeEEEEeCCCCCC
Q 044557 152 KDETLLYSVSWDR------TIKIWRTSDFKCLESITNA-HDDAINAVALSDDGD-VYTGSAD-----KKIKVWRRSPGNK 218 (362)
Q Consensus 152 ~~~~~l~s~s~d~------~i~iwd~~~~~~~~~~~~~-h~~~v~~v~~~~~~~-~~s~~~d-----g~i~iw~~~~~~~ 218 (362)
.++.+++.||.++ .+..||..+.+....-... ..... +++.. ++. ++.||.+ ..+..||..+..-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3456666676543 5677887765542211101 11111 22222 455 4556654 3567787765421
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCC------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEe
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACD------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSG 292 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~ 292 (362)
.....+....... ++ ..-+++..+.||.+ +.+..||..+.. +..+..++........+...+.+++.|
T Consensus 371 --~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~G 444 (534)
T PHA03098 371 --REEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAIYHDGKIYVIG 444 (534)
T ss_pred --eeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEEEECCEEEEEC
Confidence 1111111111111 11 22366777777742 357788876432 222222221111112222334455556
Q ss_pred eCCC--------cEEEeeCCCCceeeee
Q 044557 293 SADK--------TIRIWRGIDRNYTCLA 312 (362)
Q Consensus 293 s~D~--------~i~~W~~~~~~~~~~~ 312 (362)
+.+. .+.+||.....+..+.
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCC
Confidence 5421 2777776555555444
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.27 Score=49.24 Aligned_cols=68 Identities=24% Similarity=0.447 Sum_probs=50.6
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEE----EEcCCCcEEEEeCCCeEEEEe
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAV----ALSDDGDVYTGSADKKIKVWR 212 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v----~~~~~~~~~s~~~dg~i~iw~ 212 (362)
.++|++++|+.+|+.++.|=.+|.|.+||+...+.++.+. .|..+...+ .++.+..++++...|. +|.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 4689999999999999999999999999999988777664 344443333 3344444777777775 554
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.9 Score=41.80 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=57.8
Q ss_pred eeEEEEecCCCEEEEEECC-CcEEEEE-----------CCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEE--
Q 044557 145 VSALALTKDETLLYSVSWD-RTIKIWR-----------TSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKV-- 210 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d-~~i~iwd-----------~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~i-- 210 (362)
...-.|+|||+.+++.+.. ..+++.+ +..+.... .....|..+.|+|||.-+....+|.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMIIGGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEECCEEEEEE
Confidence 4566789998877776533 2233332 22221111 1245799999999997332222577766
Q ss_pred -EeCCCCCCcceeehh--h-hccccceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 211 -WRRSPGNKKHSLVDV--L-ERHNSGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 211 -w~~~~~~~~~~~~~~--~-~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
-....+. ..+... + ..-...+.++.|..++..+ .+..++...+|.+.
T Consensus 475 Vvr~~~G~--~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 475 VEQTEDGQ--YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred EEeCCCCc--eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 3322332 222110 1 1122335789999988855 55555544455543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.31 E-value=4.3 Score=37.71 Aligned_cols=111 Identities=20% Similarity=0.114 Sum_probs=62.1
Q ss_pred ceeEEEEecCCCEEEEEE---CC-CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEE--eCCC
Q 044557 144 AVSALALTKDETLLYSVS---WD-RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVW--RRSP 215 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s---~d-~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw--~~~~ 215 (362)
.+..-+|+|++..++-.+ .. ..+.++++++++....+. ....-..-+|+|+|+ +++...||...|| |+..
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 345556788887654432 22 358889998876544333 112223357999997 4567777765555 5554
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEE-cCCCc--EEEEeccC
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRS--IIVWEKEE 261 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~--i~~wd~~~ 261 (362)
.. ...+ ..-.+.-+.=.|+|||+.|+-. +..|. |.+++.+.
T Consensus 272 ~~-~~~L----t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 272 KN-LPRL----TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred Cc-ceec----ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 33 1111 1111222245789999987754 44554 44455543
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.65 Score=43.03 Aligned_cols=109 Identities=15% Similarity=0.259 Sum_probs=70.6
Q ss_pred eeEEEEecCCCE-------EEEEECCCcEEEEECCCc-e-EEEeeeccCc----ccEEEEEEcCCCcEEEEeCCCeEEEE
Q 044557 145 VSALALTKDETL-------LYSVSWDRTIKIWRTSDF-K-CLESITNAHD----DAINAVALSDDGDVYTGSADKKIKVW 211 (362)
Q Consensus 145 v~~~~~~~~~~~-------l~s~s~d~~i~iwd~~~~-~-~~~~~~~~h~----~~v~~v~~~~~~~~~s~~~dg~i~iw 211 (362)
|.-+.+.|+.+. =+.|=.|..|.-||++-. + .+. +...|. ....|.+-..+|.++.|+.+|.||+|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~-~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA-VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLY 456 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee-eeeccccccccccceeeecCCceEEEeecCCcEEee
Confidence 555556654321 123556888999997622 1 222 222231 23556667788999999999999999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEec
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
|. .+... ...+++-..+|.-|..+.||++|+..+ +..+.+-+.
T Consensus 457 dr-i~~~A---KTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 457 DR-IGRRA---KTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred hh-hhhhh---hhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 97 34322 233456678999999999999988655 556666654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=4.5 Score=38.94 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=68.0
Q ss_pred CCCEEEEEECC-----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC------CeEEEEeCCCCCCcc
Q 044557 153 DETLLYSVSWD-----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD------KKIKVWRRSPGNKKH 220 (362)
Q Consensus 153 ~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d------g~i~iw~~~~~~~~~ 220 (362)
++++.+.||.+ ..+..||..+.+....-...+...-.+++.. +++ ++.|+.+ +.+..||..+..-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-- 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKW-- 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCee--
Confidence 56667777765 3467788766542211111111111122222 455 4455522 4578888765421
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCC--------cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEe
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDR--------SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSG 292 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~--------~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~ 292 (362)
.....+....... + +...++..++.||.+. .+..||..++. +..+..+.........+.+.+.+++.|
T Consensus 419 ~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~G 494 (534)
T PHA03098 419 SKGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIFNNKIYVVG 494 (534)
T ss_pred eecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEECCEEEEEc
Confidence 1111111111111 1 2223566667776432 37788876532 222222221111112223344455666
Q ss_pred eCC-----CcEEEeeCCCCceeeeeE
Q 044557 293 SAD-----KTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 293 s~D-----~~i~~W~~~~~~~~~~~~ 313 (362)
+.+ ..|.+||.....+..+..
T Consensus 495 G~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 495 GDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCcCCcccceeEEEeCCCCEEEecCC
Confidence 544 456777755555544443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.13 E-value=5.3 Score=34.54 Aligned_cols=161 Identities=13% Similarity=0.127 Sum_probs=99.5
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcc
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~ 220 (362)
...+.++.|+|+.+.|++......-.||=..+++.++.+-..--.....+.+..+|+++.+. .++.+.++.++.+....
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 34589999999999999988888888887777888877643333344567777777765544 56777777665543211
Q ss_pred ee------ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccc-------eeEEEEEe--
Q 044557 221 SL------VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK-------SILCMAVV-- 285 (362)
Q Consensus 221 ~~------~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~-------~v~~~~~~-- 285 (362)
.. .......+.+.-.++|.|.++.|+.+=.-+=+.+|......... .......++. .|..+.|.
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l-~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL-SVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc-ccccccCcccccceEeeccccceecCC
Confidence 11 11111125667789999999999999888878777665322111 1111122222 13344454
Q ss_pred -CCeEEEeeCCCcEEEeeC
Q 044557 286 -SDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 286 -~~~~~s~s~D~~i~~W~~ 303 (362)
+.+++-+.+++.+.--+.
T Consensus 244 ~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred CCcEEEEecCCceEEEEec
Confidence 225666666776666553
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.92 Score=37.92 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=42.7
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEee------ec-------cCcccEEEEEEcCCCcEEEEeCCCeEEEEeC
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLESI------TN-------AHDDAINAVALSDDGDVYTGSADKKIKVWRR 213 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------~~-------~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~ 213 (362)
+..++.+|++-+.+|.+++||+.+.+++..- .. .....|..+.+..+|..+..-.+|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 4556888999999999999999988764321 11 2334567777777776333334566666654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.6 Score=27.42 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=24.9
Q ss_pred CceeEEEEecCC---CEEEEEECCCcEEEEECCC
Q 044557 143 DAVSALALTKDE---TLLYSVSWDRTIKIWRTSD 173 (362)
Q Consensus 143 ~~v~~~~~~~~~---~~l~s~s~d~~i~iwd~~~ 173 (362)
+.++++.|+|+. .+|+-+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 367899999754 4777777778999999984
|
It contains a characteristic DLL sequence motif. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=6.8 Score=35.17 Aligned_cols=154 Identities=10% Similarity=0.109 Sum_probs=81.0
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEE-EECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcce
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKI-WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~i-wd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
..+..+.+.|++.+++++. .|.+.. ++- .++........-...+.++.+.+++.++..+..|.+++=..+.+.. .+
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~s-W~ 249 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLES-WS 249 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCc-cc
Confidence 4577888899887666554 565443 222 2222222333344578899999999877777888775422333221 11
Q ss_pred eehhh-hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEEEeeCCCcEE
Q 044557 222 LVDVL-ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVCSGSADKTIR 299 (362)
Q Consensus 222 ~~~~~-~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~D~~i~ 299 (362)
..... ......+.++.+.|++.. +.++.+|.+.. ....+ ..........+-......+.+. ++.....+..|.|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~-S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLLV-SKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred cccCCccccccceeeEEEcCCCCE-EEEcCCCeEEE-eCCCC-CCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEE
Confidence 11100 001235778889887764 45556776643 33222 1222111001111234555553 45555667778887
Q ss_pred Eee
Q 044557 300 IWR 302 (362)
Q Consensus 300 ~W~ 302 (362)
-|+
T Consensus 327 ~~~ 329 (334)
T PRK13684 327 RYV 329 (334)
T ss_pred Eec
Confidence 776
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.40 E-value=3.5 Score=37.78 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=75.3
Q ss_pred eEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe---CCCeEEEEeCCCCCCcc
Q 044557 146 SALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS---ADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 146 ~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~---~dg~i~iw~~~~~~~~~ 220 (362)
..+++++.++ ..+....++.|.+.|....+.......+. ....++++|++. ++.+. .+++|.+.|..+.....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 4667788887 45555566999999988877777665443 556789999885 54443 36888888877654332
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEE 261 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~ 261 (362)
. ...-..+ ..++++|+|..++... .+++|.+.|...
T Consensus 155 ~----~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 155 T----IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred E----EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 2 1112234 7899999999766655 788999998654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.36 E-value=6.5 Score=33.68 Aligned_cols=152 Identities=20% Similarity=0.175 Sum_probs=80.4
Q ss_pred ceeEEEEecCCCEEEEEE---CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEE-eCCCeEEEEe-CCCCCC
Q 044557 144 AVSALALTKDETLLYSVS---WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTG-SADKKIKVWR-RSPGNK 218 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~-~~dg~i~iw~-~~~~~~ 218 (362)
.+.+.+++++++.+|... ....+.++.... ....+.. ...+..-.|.+++.+.+. ..+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 467888999998776655 233455554332 2222221 225566678888876554 3445555553 233322
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEc---CCCcEEEEeccCCCCc--EEEEE---eecCccceeEEEEEeCC--e
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGA---CDRSIIVWEKEEDDGN--ILVVG---ALRGHTKSILCMAVVSD--L 288 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~---~d~~i~~wd~~~~~~~--~~~~~---~~~~h~~~v~~~~~~~~--~ 288 (362)
......... -...|.++.+||||..++.-. .++.|.+--+...... ..+.. ........+..+.|.++ +
T Consensus 101 ~~~~v~~~~-~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 101 EPVEVDWPG-LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eeEEecccc-cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 211122111 112899999999999877555 3566766654322111 11111 11123456788899765 3
Q ss_pred -EEEeeCCCcEEE
Q 044557 289 -VCSGSADKTIRI 300 (362)
Q Consensus 289 -~~s~s~D~~i~~ 300 (362)
+++...+..+..
T Consensus 180 ~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 180 VVLGRSAGGPVVR 192 (253)
T ss_pred EEEeCCCCCceeE
Confidence 344444554433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.23 E-value=4.6 Score=37.08 Aligned_cols=119 Identities=9% Similarity=0.068 Sum_probs=71.3
Q ss_pred CcEEEEECCCc--eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 164 RTIKIWRTSDF--KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 164 ~~i~iwd~~~~--~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
|.+.=|-+... .....+.....++|.++.|++|++ ++.--.|++|.+++....+.........+..+..|-...|+.
T Consensus 43 ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~ 122 (657)
T KOG2377|consen 43 GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS 122 (657)
T ss_pred CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec
Confidence 44445544332 233445555677999999999998 555678999999998665544444444444445577778875
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (362)
. .-++--...| +-+|-....... +...+.|...|....|..+
T Consensus 123 s-~e~A~i~~~G-~e~y~v~pekrs---lRlVks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 123 S-TEIAFITDQG-IEFYQVLPEKRS---LRLVKSHNLNVNWYMYCPE 164 (657)
T ss_pred C-eeEEEEecCC-eEEEEEchhhhh---hhhhhhcccCccEEEEccc
Confidence 4 4444444333 556655433322 2234456666777777655
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.18 E-value=7 Score=33.67 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=37.1
Q ss_pred EEecCCCEEEEEECC-----CcEEEEECCCc-eEEEeeeccCcccEEEEEEcCCCcEEEE
Q 044557 149 ALTKDETLLYSVSWD-----RTIKIWRTSDF-KCLESITNAHDDAINAVALSDDGDVYTG 202 (362)
Q Consensus 149 ~~~~~~~~l~s~s~d-----~~i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~s~ 202 (362)
.|+|||.+|+..-.| |.|-|||.+.+ +.+.++. .|.-....+.+.+||+++..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~-t~GiGpHev~lm~DGrtlvv 178 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS-THGIGPHEVTLMADGRTLVV 178 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccc-cCCcCcceeEEecCCcEEEE
Confidence 489999999986554 67999998743 3344443 45555677889999985543
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.00 E-value=12 Score=36.87 Aligned_cols=107 Identities=11% Similarity=0.145 Sum_probs=65.7
Q ss_pred cCCCEEEEEECCCcEEEEECCC-------c----eE-------EEeeeccCcccEEEEEEc--CCCcEE-EEeCCCeEEE
Q 044557 152 KDETLLYSVSWDRTIKIWRTSD-------F----KC-------LESITNAHDDAINAVALS--DDGDVY-TGSADKKIKV 210 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~-------~----~~-------~~~~~~~h~~~v~~v~~~--~~~~~~-s~~~dg~i~i 210 (362)
.+..+|+.|.+||.|.+|.+++ . +. ...+.......++++++. ...+++ +++....|.|
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 3557899999999999997632 1 00 001111234578999998 666655 4555567888
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecC-----CC-EEEEEcCCCcEEEEec
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCD-----GS-VLYSGACDRSIIVWEK 259 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-----~~-~l~s~~~d~~i~~wd~ 259 (362)
|-............ -..|...|.+|+|-++ |. .|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 75543211111111 1124556888998763 22 7888999999998887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.77 E-value=10 Score=37.86 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=49.8
Q ss_pred cEEEEEEcCCCcE-EEEeCCCeEEEEeCC---------CCCCccee--e---hh--hhccccceeEEEEecC---CCEEE
Q 044557 187 AINAVALSDDGDV-YTGSADKKIKVWRRS---------PGNKKHSL--V---DV--LERHNSGINALALSCD---GSVLY 246 (362)
Q Consensus 187 ~v~~v~~~~~~~~-~s~~~dg~i~iw~~~---------~~~~~~~~--~---~~--~~~h~~~v~~i~~s~~---~~~l~ 246 (362)
.|..|.++|+|.+ +..|..|.+.+.=.. .+.....+ . .. ...+...|..+.|+|. +.+|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 5788899999984 445555543332111 11110000 0 00 1123467889999985 58999
Q ss_pred EEcCCCcEEEEeccCCCCcEE
Q 044557 247 SGACDRSIIVWEKEEDDGNIL 267 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~ 267 (362)
.=..|+++|+||+........
T Consensus 166 vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred EEecCCEEEEEecCCCCCCeE
Confidence 999999999999976554443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.5 Score=46.59 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=58.2
Q ss_pred ecCceeEEEEec-CCCEEEEEECCCcEEEEECCC--ceEEE----eeeccCcccEEEEEEcC---CCc-EEEEeCCCeEE
Q 044557 141 HVDAVSALALTK-DETLLYSVSWDRTIKIWRTSD--FKCLE----SITNAHDDAINAVALSD---DGD-VYTGSADKKIK 209 (362)
Q Consensus 141 h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~--~~~~~----~~~~~h~~~v~~v~~~~---~~~-~~s~~~dg~i~ 209 (362)
..+.+..+.|.. +...+. -.-|.+.|||+.- ++... +........+.-|.|+| +.. +..+-.+++|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 345566666632 111111 2236788998753 33222 12222333455566654 222 33455677888
Q ss_pred EEeCCCCCCcceeehhhhccccceeEEE-----------EecCCCEEEEEcCCCcEEEEec
Q 044557 210 VWRRSPGNKKHSLVDVLERHNSGINALA-----------LSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~~~h~~~v~~i~-----------~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
+....... ...+..|...+..++ .||||..++.++.||.+++|..
T Consensus 209 lL~~~ra~-----~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 209 LLNINRAL-----RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred EeeechHH-----HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 86554332 133444666555444 4677777777777777777743
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.9 Score=38.68 Aligned_cols=108 Identities=20% Similarity=0.237 Sum_probs=56.8
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceE---EEee---eccCcccEEEEEEcCC----CcEEEEeC-------C-
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKC---LESI---TNAHDDAINAVALSDD----GDVYTGSA-------D- 205 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~---~~~h~~~v~~v~~~~~----~~~~s~~~-------d- 205 (362)
..+.|+|.||+++|++ ...|.|++++ ..+.. +..+ ..........++++|+ +.++.... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999988775 5699999999 33332 2222 1123446789999984 55443222 1
Q ss_pred -CeEEEEeCCCCC----Ccceeehhhhc---cccceeEEEEecCCCEEEEEcCCCc
Q 044557 206 -KKIKVWRRSPGN----KKHSLVDVLER---HNSGINALALSCDGSVLYSGACDRS 253 (362)
Q Consensus 206 -g~i~iw~~~~~~----~~~~~~~~~~~---h~~~v~~i~~s~~~~~l~s~~~d~~ 253 (362)
..|.-|...... ....++..+.. ....-..|.|.|||.+.++.+..+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 234445443331 01111111111 1223456999999977776665443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.13 E-value=10 Score=33.50 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=78.8
Q ss_pred CCcEEEEECCCceEEEeeecc----CcccEEEEEEcCCCcEEEEeCCC----------eEEEEeCCCCCCcceeehhhhc
Q 044557 163 DRTIKIWRTSDFKCLESITNA----HDDAINAVALSDDGDVYTGSADK----------KIKVWRRSPGNKKHSLVDVLER 228 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~----h~~~v~~v~~~~~~~~~s~~~dg----------~i~iw~~~~~~~~~~~~~~~~~ 228 (362)
+.-+.+++.+.+..+..+... -....+.+...|+|.+..+...+ .=.+|-+...... ......
T Consensus 84 ~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~---~~l~~~ 160 (307)
T COG3386 84 EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV---VRLLDD 160 (307)
T ss_pred ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE---EEeecC
Confidence 455666676544432222111 11234567788888877654441 1134433321111 112222
Q ss_pred cccceeEEEEecCCCEEEEEcCC-CcEEEEeccCCCC---cEEEEEeecCccceeEEEEEe--CCeEEEeeCCC-cEEEe
Q 044557 229 HNSGINALALSCDGSVLYSGACD-RSIIVWEKEEDDG---NILVVGALRGHTKSILCMAVV--SDLVCSGSADK-TIRIW 301 (362)
Q Consensus 229 h~~~v~~i~~s~~~~~l~s~~~d-~~i~~wd~~~~~~---~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~-~i~~W 301 (362)
+-..-+.|+||||++.|+.+... +.|.-|++..... ..........+.+..-.++.. +.+-+++-.+| .|.+|
T Consensus 161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence 33345689999999888877654 7788887652111 000011111223333334443 23333333333 78888
Q ss_pred eCCCCceeeeeEecCCCCcEEEEEee
Q 044557 302 RGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 302 ~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
+- .++++..+.-....+++++|-
T Consensus 241 ~p---dG~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 241 NP---DGKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CC---CCcEEEEEECCCCCCccceEe
Confidence 63 245566655555677777774
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.08 E-value=1.3 Score=26.05 Aligned_cols=30 Identities=7% Similarity=0.103 Sum_probs=25.0
Q ss_pred ceeEEEEecCCC---EEEEEcCCCcEEEEeccC
Q 044557 232 GINALALSCDGS---VLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 232 ~v~~i~~s~~~~---~l~s~~~d~~i~~wd~~~ 261 (362)
.|.++.|+|++. +|+-+-.-+.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 588999998554 888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.06 E-value=3.5 Score=37.82 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=44.8
Q ss_pred ccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeC
Q 044557 230 NSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 230 ~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~ 303 (362)
.++|.+|.||+|++.|+.--.|++|-+++....+.........+.-+..|..+.|..+.=+.-=.|..+.+|.+
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v 139 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQV 139 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEE
Confidence 46899999999999999999999999998854333222211222223345556665432111122334666653
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.72 E-value=9.5 Score=32.40 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=67.8
Q ss_pred CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccce
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
..+++.||-.+.+.--|..+++..-.-.. ...+.+-+.--+..++.|...|.+.+.+..+++....... . ..|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~----~~v 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-L----ETV 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee-h----hhh
Confidence 35677888888888888888876543221 2334433333234478899999999999988864433211 1 112
Q ss_pred e-EEEEecCCCEEEEEcCCCcEEEEeccCC
Q 044557 234 N-ALALSCDGSVLYSGACDRSIIVWEKEED 262 (362)
Q Consensus 234 ~-~i~~s~~~~~l~s~~~d~~i~~wd~~~~ 262 (362)
. .....+++..++.|+.|++.+.-|..+.
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEeccccc
Confidence 1 2345679999999999999998887653
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=90.57 E-value=11 Score=32.64 Aligned_cols=241 Identities=18% Similarity=0.236 Sum_probs=117.5
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
.++.|+.|..+| +.+++...... . .. + .....|..+...++ .++.- .|+.+.++++..-.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~-~-~~------i--~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK-P-TR------I--LKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc-c-ee------E--eecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccc
Confidence 477899998888 88888722111 1 00 0 11223666666653 34333 46999999987543221110
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEE---EecCCCEEEEEECCCcEEEEECCC----c-eEE
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALA---LTKDETLLYSVSWDRTIKIWRTSD----F-KCL 177 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~~~~~~~l~s~s~d~~i~iwd~~~----~-~~~ 177 (362)
. . ..+..... ... ......+...+ -......|+.+ ..++|.+|.... + +..
T Consensus 74 ~-~-~~~~~~~~---------~~~---------~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 74 P-L-AFPKSRSL---------PTK---------LPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred c-c-cccccccc---------ccc---------ccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCccccccee
Confidence 0 0 00000000 000 00111122222 12223344444 456888887654 2 445
Q ss_pred EeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhh---------ccccceeEEEEecCCCEEEEE
Q 044557 178 ESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE---------RHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 178 ~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~---------~h~~~v~~i~~s~~~~~l~s~ 248 (362)
+++.. .+.+.+++|.+ +.++.|.. +...+.|+.++... .+...-. ....++..+.+ +++.+|++.
T Consensus 133 ke~~l--p~~~~~i~~~~-~~i~v~~~-~~f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~ 206 (275)
T PF00780_consen 133 KEISL--PDPPSSIAFLG-NKICVGTS-KGFYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY 206 (275)
T ss_pred EEEEc--CCCcEEEEEeC-CEEEEEeC-CceEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe
Confidence 55543 36788888883 33555544 45778888765432 2211100 11123333333 345666653
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecC
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
|..-.+.|... +... ...+. ....+..+.+...+++..+.+ .|.+|+... +.+++++.+
T Consensus 207 --~~~g~fv~~~G-~~~r--~~~i~-W~~~p~~~~~~~pyli~~~~~-~iEV~~~~~--~~lvQ~i~~ 265 (275)
T PF00780_consen 207 --DNIGVFVNKNG-EPSR--KSTIQ-WSSAPQSVAYSSPYLIAFSSN-SIEVRSLET--GELVQTIPL 265 (275)
T ss_pred --cceEEEEcCCC-CcCc--ccEEE-cCCchhEEEEECCEEEEECCC-EEEEEECcC--CcEEEEEEC
Confidence 33344444432 2111 11111 233566777877788777775 599999654 455666653
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.08 E-value=1.7 Score=44.15 Aligned_cols=138 Identities=10% Similarity=0.043 Sum_probs=79.6
Q ss_pred ceeEEEEecCCCEEEE--EECCCcEEEEECCCceEEEe-----ee---ccCcc--cEEEEEEcCCC--cEEEEeCCCeEE
Q 044557 144 AVSALALTKDETLLYS--VSWDRTIKIWRTSDFKCLES-----IT---NAHDD--AINAVALSDDG--DVYTGSADKKIK 209 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s--~s~d~~i~iwd~~~~~~~~~-----~~---~~h~~--~v~~v~~~~~~--~~~s~~~dg~i~ 209 (362)
.+.-+...+|+...++ .+.+-.|..||+++...... +. ...+. ...++.|+|.- ..+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3444555667655443 33444788999876432110 00 01111 24566777754 356778899999
Q ss_pred EEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec-CccceeEEEEEeCC
Q 044557 210 VWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR-GHTKSILCMAVVSD 287 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~ 287 (362)
+..+.-.... . .. ..-...+++++|+|-|+.++.|-..|++.-|.-.-+.. . .+.... ....+|+|+.|...
T Consensus 182 V~~~~~~~~~--v-~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-~-~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 182 VKSTKQLAQN--V-TS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-S-EIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhh--h-cc-cCcccceeeEEeccccceeeEecCCCeEEEeeccccee-e-cccCCCcCCCcceeEEEEecc
Confidence 8865432111 1 00 01345689999999999999999999998886432110 0 111111 12467889988654
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.96 E-value=12 Score=32.43 Aligned_cols=201 Identities=12% Similarity=0.167 Sum_probs=110.1
Q ss_pred cceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCC
Q 044557 20 SYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQE 99 (362)
Q Consensus 20 ~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~ 99 (362)
+.+..+.+++++..-+.++.-+++.|+.+........+.. -.+--.++...++.++.+..|.-+-+.|+....
T Consensus 87 ~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-------t~gyaygv~vsGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 87 DLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLN-------TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhheeEecccEEEEEcCCCceEEEeccCCCCcceecccc-------CCceEEEEEecCCEEEEeeccCcEEEEECCCCC
Confidence 3445566678899999999999999998755433222211 013445667788888888877667778875432
Q ss_pred CCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEe
Q 044557 100 PDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLES 179 (362)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 179 (362)
. +........+. .....++.+ |++-+.+..|+-+.|-|+.......-
T Consensus 160 s--P~lagrya~~~-----------------------------~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvl 206 (370)
T COG5276 160 S--PQLAGRYALPG-----------------------------GDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVL 206 (370)
T ss_pred C--ceeeeeeccCC-----------------------------CCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeE
Confidence 1 11111111100 011223344 67788888999999999876543221
Q ss_pred eeccCcc-cEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 180 ITNAHDD-AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 180 ~~~~h~~-~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
+..-..+ .+.++..+++-.+++.... -+.+-|....... +..... ....++..-.+.--+++.+.+..+.-+-+-|
T Consensus 207 i~~~n~g~g~~sv~vsdnr~y~vvy~e-gvlivd~s~~ssp-~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~id 283 (370)
T COG5276 207 IGSYNTGPGTYSVSVSDNRAYLVVYDE-GVLIVDVSGPSSP-TVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIID 283 (370)
T ss_pred EEEEecCCceEEEEecCCeeEEEEccc-ceEEEecCCCCCc-eEeecc-ccCCcccccceecccceeeeeccccCceeEe
Confidence 1111223 5777777776655554433 3555565443321 121111 1222222112233466777776666666677
Q ss_pred ccCCC
Q 044557 259 KEEDD 263 (362)
Q Consensus 259 ~~~~~ 263 (362)
..++.
T Consensus 284 isnp~ 288 (370)
T COG5276 284 ISNPP 288 (370)
T ss_pred ccCCC
Confidence 66543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.84 E-value=23 Score=35.43 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=49.3
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCC----------ceE---EEe-------eeccCcccEEEEEEcCCC----cE
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSD----------FKC---LES-------ITNAHDDAINAVALSDDG----DV 199 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~----------~~~---~~~-------~~~~h~~~v~~v~~~~~~----~~ 199 (362)
.|.-+.++|+|++|+..|..+-+ |-.+.. ++. .+. +...+...|..+.|+|.+ .+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 47788899999999988875544 433321 111 111 112334578899999864 48
Q ss_pred EEEeCCCeEEEEeCCCCC
Q 044557 200 YTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 200 ~s~~~dg~i~iw~~~~~~ 217 (362)
+.-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 888999999999987543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.67 E-value=14 Score=32.69 Aligned_cols=135 Identities=14% Similarity=0.212 Sum_probs=72.3
Q ss_pred eEEEEecCCCEEEEEEC-----C----CcEEEEECC-CceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCCeEEEEeC
Q 044557 146 SALALTKDETLLYSVSW-----D----RTIKIWRTS-DFKCLESITNAHDDAINAVALSDDGD-VY-TGSADKKIKVWRR 213 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~-----d----~~i~iwd~~-~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg~i~iw~~ 213 (362)
+...+.|+|.+.++... . ..=.+|.+. .+...+.+ ..+-..-+.++|||+++ ++ +=+..+.|.-|++
T Consensus 114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-cCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 34555666665554333 0 111455554 34443333 24445568899999996 44 4455578888877
Q ss_pred CC--CCCcce-eehhhhccccceeEEEEecCCCEEEEEcCCC-cEEEEeccCCCCcEEEEEeecCccceeEEEEEeC
Q 044557 214 SP--GNKKHS-LVDVLERHNSGINALALSCDGSVLYSGACDR-SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS 286 (362)
Q Consensus 214 ~~--~~~~~~-~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 286 (362)
.. +..... .........+..-.++...+|.+-+++-..| .|..|+.. ++ .+....-....+.+++|.+
T Consensus 193 d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~----l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK----LLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc----EEEEEECCCCCCccceEeC
Confidence 53 111110 0111112234444566667777765555554 88889865 22 2333334446678888865
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.44 E-value=2.8 Score=38.88 Aligned_cols=108 Identities=20% Similarity=0.161 Sum_probs=58.5
Q ss_pred eEEEEecCCCEEE-EEECCCc--EEEEECCCceEEEeeeccCcccEE-EEEEcCCCc--EEEEeCCCeEEEE--eCCCCC
Q 044557 146 SALALTKDETLLY-SVSWDRT--IKIWRTSDFKCLESITNAHDDAIN-AVALSDDGD--VYTGSADKKIKVW--RRSPGN 217 (362)
Q Consensus 146 ~~~~~~~~~~~l~-s~s~d~~--i~iwd~~~~~~~~~~~~~h~~~v~-~v~~~~~~~--~~s~~~dg~i~iw--~~~~~~ 217 (362)
..-+|+|||+.|+ +...|+. |.+.|+..... ..+.. ...+. .=.|+|+|+ +++.+..|.-.|| +.+...
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~--~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTN--GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eeccc--CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 3457899998654 5566775 45556666553 33332 22222 335889997 4456666654554 554332
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCC-Cc--EEEEeccC
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACD-RS--IIVWEKEE 261 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-~~--i~~wd~~~ 261 (362)
. ..+.... -.. ..-.|+|||++|+..+.. |. |.+.|+.+
T Consensus 318 ~-~riT~~~--~~~--~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 318 V-TRLTFSG--GGN--SNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred e-eEeeccC--CCC--cCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 2 2221111 111 155789999998877643 44 44455443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.08 E-value=16 Score=32.57 Aligned_cols=197 Identities=14% Similarity=0.128 Sum_probs=102.5
Q ss_pred EEEecCCCEEEEE--ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCC-cceeeh
Q 044557 148 LALTKDETLLYSV--SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNK-KHSLVD 224 (362)
Q Consensus 148 ~~~~~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~-~~~~~~ 224 (362)
++++.|+++++.. +--..|.|-|+...+.+.++..+ + ...+-=.++..|.+-+.||.+.-..++...+ ..+...
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G-C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G-CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S-EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C-EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence 4677888877664 45567889999998888776532 1 1111112233488888999888888774332 222111
Q ss_pred hhhccccce-eEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCc----------cceeEEEEEeC--Ce-EE
Q 044557 225 VLERHNSGI-NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGH----------TKSILCMAVVS--DL-VC 290 (362)
Q Consensus 225 ~~~~h~~~v-~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h----------~~~v~~~~~~~--~~-~~ 290 (362)
.+..-..++ ..-++...+..++=-+..|.|+--|+..... .....+.-- .+.-.-+++.. +. ++
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~--~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA--KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE--EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc--cccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 221112222 2334444555555577888888877764331 222222110 01112234432 22 11
Q ss_pred E-------eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEE-ecCCCCcEEEEeccc
Q 044557 291 S-------GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC-SGSLDCDIKVWQISF 358 (362)
Q Consensus 291 s-------~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~s~D~~i~~W~~~~ 358 (362)
- .-.|..=.||-....+.+.+..+.. ...+.+++++.+.+ .+|+ ....|+.+.+||...
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~--------P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDK--------PLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS---------EEEEEETTTTEEEEEETTT
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCC--------cEEEEEcCCCCeEEEEeCcC
Confidence 1 1245556677443444566666652 23577888876532 3454 345689999999853
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=89.04 E-value=14 Score=31.73 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=70.3
Q ss_pred eeEEEEecCCCEEEEEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCccee
Q 044557 145 VSALALTKDETLLYSVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
...+.|..++.++-+.+.-| .|+.+|+.+++.+..........-..++...+.-+.-.-.++...+||..+-+...++
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 56788877888888888776 7999999999877665544444555666664432334557889999998765433222
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
. ....-..++ .||+.|+.......++++|..+
T Consensus 127 ~-----y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 127 P-----YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp E------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT
T ss_pred e-----cCCcceEEE--cCCCEEEEECCccceEEECCcc
Confidence 1 122334444 5788888887788899998654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=88.76 E-value=21 Score=34.90 Aligned_cols=108 Identities=12% Similarity=0.232 Sum_probs=64.7
Q ss_pred EEEcCCCcEEEEeCC-CeEEEEeCCCCCCcceeehhhhccccceeEEEEe--cCCCEEEEEcCCCcEEEEecc-----CC
Q 044557 191 VALSDDGDVYTGSAD-KKIKVWRRSPGNKKHSLVDVLERHNSGINALALS--CDGSVLYSGACDRSIIVWEKE-----ED 262 (362)
Q Consensus 191 v~~~~~~~~~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s--~~~~~l~s~~~d~~i~~wd~~-----~~ 262 (362)
+.-+.-++++....+ .++.|||...+.. .....+ .....|..+.|. |||+.+++-|..+.|.+|... ..
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~l--E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVL--EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEE--EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 333344555555444 4799999876542 122222 346789999985 689999999999999998642 11
Q ss_pred CCcEEEEE--eecCcc-ceeEEEEEeCC-eEEEeeCCCcEEEee
Q 044557 263 DGNILVVG--ALRGHT-KSILCMAVVSD-LVCSGSADKTIRIWR 302 (362)
Q Consensus 263 ~~~~~~~~--~~~~h~-~~v~~~~~~~~-~~~s~s~D~~i~~W~ 302 (362)
.+....+. .+..|+ .+|.+..|.++ .++.|+ ++.+.+++
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFD 154 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEEC
Confidence 11111111 123344 46777777655 444444 35677776
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=88.20 E-value=20 Score=32.48 Aligned_cols=179 Identities=12% Similarity=0.071 Sum_probs=84.9
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccC----------------cccEEEEEEcCCCc-EEEE-eC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH----------------DDAINAVALSDDGD-VYTG-SA 204 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h----------------~~~v~~v~~~~~~~-~~s~-~~ 204 (362)
..+....|+|+|+.+|-.. ++.|.+++..++...+--..+. -+.-..+.|||+++ |+.. -.
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 4567788999999988776 6899999887765433211110 01124577888886 3321 12
Q ss_pred CCeEE-----------------------------------EEeCCCCCCcc-eeehhhhccccceeEEEEecCCCEEEEE
Q 044557 205 DKKIK-----------------------------------VWRRSPGNKKH-SLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 205 dg~i~-----------------------------------iw~~~~~~~~~-~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
+..|+ |+++.+++... ........-...+..+.|++++..|+..
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence 22222 23333332110 0000112234457788899988844433
Q ss_pred c--CCC---cEEEEeccCCCCcEEEEEeecCccceeEEEEEe-C---CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCC
Q 044557 249 A--CDR---SIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-S---DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG 319 (362)
Q Consensus 249 ~--~d~---~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~---~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~ 319 (362)
- .+. .+.++|..++...........+....-....+. + .++.....||--.|+-...... ....|....-
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~-~~~~lT~G~~ 280 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG-KPRQLTSGDW 280 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS-EEEESS-SSS
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc-ceeccccCce
Confidence 2 232 255666665444333322222222222233332 2 2555555788777775433222 2334554455
Q ss_pred cEEE
Q 044557 320 PVKC 323 (362)
Q Consensus 320 ~v~~ 323 (362)
.|..
T Consensus 281 ~V~~ 284 (353)
T PF00930_consen 281 EVTS 284 (353)
T ss_dssp -EEE
T ss_pred eecc
Confidence 5655
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=87.79 E-value=26 Score=33.40 Aligned_cols=71 Identities=10% Similarity=0.030 Sum_probs=40.2
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC-ceeEEEecCCcEEEEecCCCC
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-DKLFSAHQDHKIRVWKINNQE 99 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~s~~~dg~i~~w~~~~~~ 99 (362)
.+..++.++.|+.+.-.|..+.+............ ..........+.... +.++.++.++.|..+|.++++
T Consensus 60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~-~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPAD-RGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCcc-ccccccccCCcEEccCCeEEEecCCCeEEEEECCCCC
Confidence 45667778888999988987654322211110000 000000001123334 788889999999999987765
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=87.73 E-value=23 Score=32.80 Aligned_cols=104 Identities=14% Similarity=0.210 Sum_probs=59.4
Q ss_pred cEEEEeCCCeEEEEeCCCCCCcc--eeehhhhccccceeEEEEec----CCCEEEEEcCCCcEEEEeccCCCCc-----E
Q 044557 198 DVYTGSADKKIKVWRRSPGNKKH--SLVDVLERHNSGINALALSC----DGSVLYSGACDRSIIVWEKEEDDGN-----I 266 (362)
Q Consensus 198 ~~~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~h~~~v~~i~~s~----~~~~l~s~~~d~~i~~wd~~~~~~~-----~ 266 (362)
+++.|+..|.++||+........ -+.. ..-..||-.+..-+ .....++--.-+.+.+|.+....+. .
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE--~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLE--TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEE--EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 48899999999999985433211 1111 12346777776532 2233333466778888887432222 2
Q ss_pred EEEEeecCccceeE--EE---EEe----CCeEEEeeCCCcEEEeeC
Q 044557 267 LVVGALRGHTKSIL--CM---AVV----SDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 267 ~~~~~~~~h~~~v~--~~---~~~----~~~~~s~s~D~~i~~W~~ 303 (362)
..+..+..|.-.-. .+ .|. .++++.-|-||.+.+++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feq 162 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQ 162 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeC
Confidence 22233333432222 22 221 258999999999999984
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=87.62 E-value=18 Score=31.48 Aligned_cols=113 Identities=8% Similarity=0.194 Sum_probs=64.7
Q ss_pred CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc------CCCcEEEEeccCCCCcEEEEEeecC-----
Q 044557 206 KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA------CDRSIIVWEKEEDDGNILVVGALRG----- 274 (362)
Q Consensus 206 g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~----- 274 (362)
..|++||..+.. ....-..-.+.|+++.|..+.+.++.|. ....+..||..+.. + ..+.+
T Consensus 16 ~~lC~yd~~~~q----W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w---~~~~~~~s~~ 86 (281)
T PF12768_consen 16 PGLCLYDTDNSQ----WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--W---SSLGGGSSNS 86 (281)
T ss_pred CEEEEEECCCCE----eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--e---eecCCccccc
Confidence 468899876542 2222223457899999987767777664 34567788886532 2 12222
Q ss_pred ccceeEEEEEe---CC-eEEEee-CCC--cEEEeeCCCCceeeeeE-ecCCCCcEEEEEeeec
Q 044557 275 HTKSILCMAVV---SD-LVCSGS-ADK--TIRIWRGIDRNYTCLAV-LEGHRGPVKCLAAAID 329 (362)
Q Consensus 275 h~~~v~~~~~~---~~-~~~s~s-~D~--~i~~W~~~~~~~~~~~~-l~~h~~~v~~~~~~~~ 329 (362)
-.+.|..+.+. .+ +.+.|. .++ .|..|| ..++..+.. +.+-...|..+.+.+-
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccccccCCCCEEEEEEEEec
Confidence 23566666663 22 444433 333 455665 445555544 3444667888877765
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=22 Score=31.96 Aligned_cols=157 Identities=10% Similarity=0.005 Sum_probs=78.2
Q ss_pred cccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC
Q 044557 185 DDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG 264 (362)
Q Consensus 185 ~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~ 264 (362)
...+..+.+.|++.++..+..|.+..- .+.+.. +.......-...++++.+.++++.++.+ ..|.+++=+...+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~--tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~- 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQT--AWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE- 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCC--eEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC-
Confidence 456888999999887777777866532 112211 1111112234578889999998877665 45766432222211
Q ss_pred cEEEEEee-cCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEE
Q 044557 265 NILVVGAL-RGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLV 342 (362)
Q Consensus 265 ~~~~~~~~-~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l 342 (362)
.......- ..-...+..+.+.++ .+..++.+|.|..=.-...++..+....+-......+.|..+. ..+
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~---------~~~ 317 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE---------KGF 317 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCC---------ceE
Confidence 11111100 001123566666543 4556667776543210112232221112222356666665332 234
Q ss_pred EecCCCCcEEEEec
Q 044557 343 CSGSLDCDIKVWQI 356 (362)
Q Consensus 343 ~s~s~D~~i~~W~~ 356 (362)
+ .+..|.|.-|+-
T Consensus 318 ~-~G~~G~il~~~~ 330 (334)
T PRK13684 318 V-LGQRGVLLRYVG 330 (334)
T ss_pred E-ECCCceEEEecC
Confidence 4 456788877653
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.71 E-value=5.3 Score=33.36 Aligned_cols=63 Identities=11% Similarity=0.221 Sum_probs=45.0
Q ss_pred CcEEEEeCCCeEEEEeCCCCCCccee---ehhhh-------ccccceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 197 GDVYTGSADKKIKVWRRSPGNKKHSL---VDVLE-------RHNSGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 197 ~~~~s~~~dg~i~iw~~~~~~~~~~~---~~~~~-------~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
..+++.+.+|.+.+||+.+.+..... ...+. .....|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 34888899999999999876532221 22232 3456788889998898887765 4778888865
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=86.26 E-value=11 Score=34.30 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=59.4
Q ss_pred CceeEEEEecCCCEEEEEE-----------CCC-cEEEEECCC--ce--EEEeeeccCcccEEEEEEcCCCcEEEEeCCC
Q 044557 143 DAVSALALTKDETLLYSVS-----------WDR-TIKIWRTSD--FK--CLESITNAHDDAINAVALSDDGDVYTGSADK 206 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s-----------~d~-~i~iwd~~~--~~--~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg 206 (362)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+... ......+++.++| ++.+....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~-l~~p~Gi~~~~~G-lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE-LSMVTGLAVAVGG-VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC-CCCccceeEecCC-EEEeCCCe
Confidence 3457889999999877653 223 677776432 22 12233322 2345788888888 66666554
Q ss_pred eEEEEeCCCCC----Ccceeehhhhc----cccceeEEEEecCCCEEEEEc
Q 044557 207 KIKVWRRSPGN----KKHSLVDVLER----HNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 207 ~i~iw~~~~~~----~~~~~~~~~~~----h~~~v~~i~~s~~~~~l~s~~ 249 (362)
..++.+..... ....+...+.. +......++|.|||.+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44444543211 11122222322 234477899999998777555
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=86.26 E-value=18 Score=29.94 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.7
Q ss_pred ceeEEEecCCcEEEEecC
Q 044557 79 DKLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 79 ~~l~s~~~dg~i~~w~~~ 96 (362)
|.|+.+.....|.+|++.
T Consensus 29 d~Lfva~~g~~Vev~~l~ 46 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLE 46 (215)
T ss_pred ceEEEEcCCCEEEEEEcc
Confidence 778887888999999997
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=85.85 E-value=40 Score=33.69 Aligned_cols=112 Identities=10% Similarity=0.087 Sum_probs=62.7
Q ss_pred ceeEEEEecCCCEEEEEECC-----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCC-----CeEEEE
Q 044557 144 AVSALALTKDETLLYSVSWD-----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSAD-----KKIKVW 211 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~d-----g~i~iw 211 (362)
.+..+.++||+++|+-+... -.|++-|+.+++.+.... .. .-..++|.+++. | ++...+ ..|..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 35667889999987765322 358888888776433221 11 114589998876 4 343322 367778
Q ss_pred eCCCCCCcceeehhhhcccccee-EEEEecCCCEEEEEcC---CCcEEEEecc
Q 044557 212 RRSPGNKKHSLVDVLERHNSGIN-ALALSCDGSVLYSGAC---DRSIIVWEKE 260 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~-~i~~s~~~~~l~s~~~---d~~i~~wd~~ 260 (362)
++.++...-.++.. ....... .+..+.|+++++..+. ++.+.+++..
T Consensus 205 ~lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 88766322222221 1122222 3334558887664443 3568888854
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.64 E-value=16 Score=34.28 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=66.5
Q ss_pred cCCCEEEE-EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--------EEEEeCCCeEEEEeCCCCCCccee
Q 044557 152 KDETLLYS-VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--------VYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 152 ~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--------~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.+.++++. |+.-..+.--|++.++.+..+.. |... -|.|.|..+ -+.|-++..|--.|..-.......
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~-~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDL-KDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeec-CCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 34555444 44555677778899999988863 4433 466777542 234545555544444322211111
Q ss_pred ehhhhccccceeEEEEe----cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe
Q 044557 223 VDVLERHNSGINALALS----CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s----~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 285 (362)
. .....++.-.|+ -...+++.||..|.||+||.-.-+ .-..+++-...|..+...
T Consensus 554 ~----esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r----AKtalP~lG~aIk~idvt 612 (776)
T COG5167 554 V----ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR----AKTALPGLGDAIKHIDVT 612 (776)
T ss_pred e----eehhccccccccccccccCceEEEecCCCceeeehhhcch----hhhcCcccccceeeeEee
Confidence 0 111122222222 245799999999999999965321 112345555566665553
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=85.50 E-value=19 Score=32.29 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=35.6
Q ss_pred cEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee---hhhhccccceeEEEEecC
Q 044557 187 AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV---DVLERHNSGINALALSCD 241 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i~~s~~ 241 (362)
..++|+|.|+|+++.+-..|.|++++ ..+.....+. ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 35789999999988888899999998 3333211111 222234456788999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=85.16 E-value=31 Score=31.80 Aligned_cols=150 Identities=11% Similarity=0.010 Sum_probs=77.2
Q ss_pred EEEEEcCCCcEEEEeCCCeEEE-EeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcE-
Q 044557 189 NAVALSDDGDVYTGSADKKIKV-WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI- 266 (362)
Q Consensus 189 ~~v~~~~~~~~~s~~~dg~i~i-w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~- 266 (362)
..+..++++.++..+..|.+.. ||- +...-.. ........++.+.+.+++..++++ .+|.+ ++....+....
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~--~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQP--HNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCC--CCcceEE--ecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 3455667787777777775433 332 2110011 111224568889999998877765 55665 33333222110
Q ss_pred EEEEeecC--ccceeEEEEEeC-CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEE
Q 044557 267 LVVGALRG--HTKSILCMAVVS-DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC 343 (362)
Q Consensus 267 ~~~~~~~~--h~~~v~~~~~~~-~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 343 (362)
.......- -...+..+.+.+ +.+..++.+|.+....-..++++....-.+-......+.|.+++ +.++
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~---------~g~~ 386 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDK---------KGFV 386 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCC---------ceEE
Confidence 00111111 123467777754 46777778888776642233443332223334567788875432 2233
Q ss_pred ecCCCCcEEEE
Q 044557 344 SGSLDCDIKVW 354 (362)
Q Consensus 344 s~s~D~~i~~W 354 (362)
.+.+|.|.-|
T Consensus 387 -~G~~G~il~~ 396 (398)
T PLN00033 387 -LGNDGVLLRY 396 (398)
T ss_pred -EeCCcEEEEe
Confidence 4567887654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=85.11 E-value=37 Score=32.60 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=67.3
Q ss_pred eeecCceeEEEEecC----CCEEEEEECCCcEEEEECCC-----ceEEEeee--ccCccc--EEEEEEcCCCcEEEEeCC
Q 044557 139 VHHVDAVSALALTKD----ETLLYSVSWDRTIKIWRTSD-----FKCLESIT--NAHDDA--INAVALSDDGDVYTGSAD 205 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~----~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~--~~h~~~--v~~v~~~~~~~~~s~~~d 205 (362)
.+..+.|..+.|.|- ..-|.+..-.+.|.||.+.. .+.+.... ....-+ -..+.|+|...+++.-..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 345566788888874 33566677789999998752 22221111 001111 134678888876554333
Q ss_pred CeE-EEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CCcEEEEecc
Q 044557 206 KKI-KVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DRSIIVWEKE 260 (362)
Q Consensus 206 g~i-~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~ 260 (362)
..+ .++++...... ....+ ...+-|.|.+|.+||+.|+.+-. .=.-++||-.
T Consensus 133 ~dvSV~~sV~~d~sr--VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSR--VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCce--EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 333 34444433321 11122 24567999999999998876643 3345788853
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=84.02 E-value=12 Score=29.81 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=24.1
Q ss_pred ceeEEEEecCC------CEEEEEcCCCcEEEEeccC
Q 044557 232 GINALALSCDG------SVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 232 ~v~~i~~s~~~------~~l~s~~~d~~i~~wd~~~ 261 (362)
.|.+++|||-| ..|++-..++.+.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999954 4788888999999997653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=83.34 E-value=25 Score=34.83 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=70.2
Q ss_pred ceeEEEEec--CCCEEEEEcCCCcEEEEeccC-------C----CC-c-EEEE---EeecCccceeEEEEEe--C--CeE
Q 044557 232 GINALALSC--DGSVLYSGACDRSIIVWEKEE-------D----DG-N-ILVV---GALRGHTKSILCMAVV--S--DLV 289 (362)
Q Consensus 232 ~v~~i~~s~--~~~~l~s~~~d~~i~~wd~~~-------~----~~-~-~~~~---~~~~~h~~~v~~~~~~--~--~~~ 289 (362)
.|+.|.+.. +...|+.+..||.|.+|..+. . +. . ...+ -.+. -...++.+++. . .+|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 355555443 556899999999999997421 0 00 0 0000 0011 12356677765 2 367
Q ss_pred EEeeCCCcEEEeeCCC--CceeeeeEecCCCCcEEEEEeeecCCccCCCCCc-eEEEecCCCCcEEEEec
Q 044557 290 CSGSADKTIRIWRGID--RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTS-YLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 290 ~s~s~D~~i~~W~~~~--~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~-~~l~s~s~D~~i~~W~~ 356 (362)
|.++--..|.||-... ........ ..|...|-+++|.++... +.| .+|++++-.|++.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s-~~~~hNIP~VSFl~~~~d----~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPS-HQHSHNIPNVSFLDDDLD----PNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccc-cccccCCCeeEeecCCCC----CccceEEEEEeccCcEEEEEE
Confidence 7777778898885321 11111111 136667999999876531 223 37888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.91 E-value=38 Score=31.04 Aligned_cols=115 Identities=20% Similarity=0.318 Sum_probs=75.8
Q ss_pred ceeEEEEecCCCEEEEEEC---CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEE-EeCCCeEEEEeCCCCCC
Q 044557 144 AVSALALTKDETLLYSVSW---DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYT-GSADKKIKVWRRSPGNK 218 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s-~~~dg~i~iw~~~~~~~ 218 (362)
....++++|+++.++.+.. ++++.+.|..+.+.......+ ..+ ..+++.|+|. ++. -..++.|.+.|......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v 194 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV 194 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce
Confidence 3467889999987777655 688999998888877764332 233 7899999997 443 44789999999665432
Q ss_pred cc-eeehhhhccccceeEEEEecCCCEEEEEcCC---CcEEEEeccC
Q 044557 219 KH-SLVDVLERHNSGINALALSCDGSVLYSGACD---RSIIVWEKEE 261 (362)
Q Consensus 219 ~~-~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d---~~i~~wd~~~ 261 (362)
.. +........ ..-..+.++|+|..++..... +.+...|...
T Consensus 195 ~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 195 VRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred eccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 21 000011111 223568899999977766544 4787777764
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.74 E-value=45 Score=31.71 Aligned_cols=132 Identities=10% Similarity=0.031 Sum_probs=59.4
Q ss_pred cCCCEEEEEECC--CcEEEEECCCceEEE--eeeccCcccEEEEEEcCCCc-EEEEeCC---CeEEEEeCCCCCCcceee
Q 044557 152 KDETLLYSVSWD--RTIKIWRTSDFKCLE--SITNAHDDAINAVALSDDGD-VYTGSAD---KKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 152 ~~~~~l~s~s~d--~~i~iwd~~~~~~~~--~~~~~h~~~v~~v~~~~~~~-~~s~~~d---g~i~iw~~~~~~~~~~~~ 223 (362)
-++.+.+.||.+ ..+..||..+.+... .+..... -.+++. -+|+ ++.|+.+ ..+..||..+.. -...
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~--~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~ 391 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC--NPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQ--WQFG 391 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc--ccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCE--EEeC
Confidence 356666667654 357788876543222 1211111 112222 2466 4556544 347778876542 1111
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD 295 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D 295 (362)
..+....... ++ ..-+|+..+.|+ .+-+||..++ .+..+..+.............+.+.+.|+.+
T Consensus 392 ~~m~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 392 PSTYYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSN--TWTLIDDPIYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CCCCCccccc-eE-EEECCEEEEECC---ceEEecCCCC--cEeEcCCCCCCccccEEEEECCEEEEECCcC
Confidence 1111111111 11 233566666664 4677887643 3333333332222222333444566666654
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=82.28 E-value=39 Score=30.74 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=37.0
Q ss_pred cEEEEEEcCCCcEEEEeC------------CC-eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc
Q 044557 187 AINAVALSDDGDVYTGSA------------DK-KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS 253 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s~~~------------dg-~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~ 253 (362)
....|+|.++|+++++.. .+ .|.+++-.++.........+...-.....+++.++| |+.+..+..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 456788888888766532 23 677775443322111111111112235678888888 555555543
Q ss_pred EEEEec
Q 044557 254 IIVWEK 259 (362)
Q Consensus 254 i~~wd~ 259 (362)
.++.|.
T Consensus 93 ~~~~d~ 98 (367)
T TIGR02604 93 LFLRDK 98 (367)
T ss_pred EEEeCC
Confidence 334454
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=81.42 E-value=48 Score=31.16 Aligned_cols=109 Identities=21% Similarity=0.198 Sum_probs=61.2
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceE--EEe---ee-ccCcccEEEEEEcCCC-------cEEEE-eC--
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC--LES---IT-NAHDDAINAVALSDDG-------DVYTG-SA-- 204 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~---~~-~~h~~~v~~v~~~~~~-------~~~s~-~~-- 204 (362)
.......|+|.||+++|++--..|.|++++..+... +.. +. ..-......|+++|+- .++.. +.
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345678899999998887765569999998654432 111 11 1124567889999874 23322 11
Q ss_pred -------CCeEEEEeCCCCC----Ccceeehhh---hccccceeEEEEecCCCEEEEEcCC
Q 044557 205 -------DKKIKVWRRSPGN----KKHSLVDVL---ERHNSGINALALSCDGSVLYSGACD 251 (362)
Q Consensus 205 -------dg~i~iw~~~~~~----~~~~~~~~~---~~h~~~v~~i~~s~~~~~l~s~~~d 251 (362)
...|.-|.+.... ....++..+ ..|. -..|+|.|||.++++-+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 2345555553211 111222111 1233 3468899999877755543
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=81.09 E-value=4 Score=39.44 Aligned_cols=36 Identities=36% Similarity=0.782 Sum_probs=27.8
Q ss_pred eeEEEEec----CCCEEEEEECCCcEEEEECCCceEEEee
Q 044557 145 VSALALTK----DETLLYSVSWDRTIKIWRTSDFKCLESI 180 (362)
Q Consensus 145 v~~~~~~~----~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 180 (362)
+.++++++ +..+|++.+.|+++|+||+.+++++...
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 34445544 6789999999999999999999986654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=80.40 E-value=30 Score=32.06 Aligned_cols=38 Identities=5% Similarity=-0.074 Sum_probs=31.3
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEee
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 180 (362)
..+.++..+|++++.|+...=|+|.++|+.++..++-+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 45788999999998888777799999999987766544
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.38 E-value=33 Score=32.45 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=47.0
Q ss_pred cEEEEEEcCCCc-EEEEeCCCeEEEEe-----C----CCCCCccee-----ehhh--hccccceeEEEEecCC---CEEE
Q 044557 187 AINAVALSDDGD-VYTGSADKKIKVWR-----R----SPGNKKHSL-----VDVL--ERHNSGINALALSCDG---SVLY 246 (362)
Q Consensus 187 ~v~~v~~~~~~~-~~s~~~dg~i~iw~-----~----~~~~~~~~~-----~~~~--~~h~~~v~~i~~s~~~---~~l~ 246 (362)
.|..+..++.|. ++-.+.+|.+.++= . ++++..-.+ -..+ ....-.+..++|+|+. .+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 466777888886 56677888776653 1 122111100 0000 1122346678999975 6888
Q ss_pred EEcCCCcEEEEeccCC
Q 044557 247 SGACDRSIIVWEKEED 262 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~ 262 (362)
.-+.|+.||+||+.+.
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 8889999999998754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 362 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-21 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-18 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-09 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-15 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 3e-15 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 5e-14 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 5e-12 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 3e-11 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 9e-11 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-10 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 3e-10 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-10 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-10 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 9e-08 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-10 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 8e-08 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-10 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 7e-10 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 7e-10 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 7e-10 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 8e-10 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 8e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 8e-10 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 8e-10 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-10 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-06 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-09 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-09 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 7e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-06 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 8e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 1e-08 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-07 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-08 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-08 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 3e-08 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-08 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 4e-08 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 4e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-07 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 3e-07 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 3e-07 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-07 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 4e-07 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-07 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 3e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-07 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 5e-07 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 3e-05 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 9e-07 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 1e-06 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-06 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 3e-06 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 4e-06 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 7e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 9e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-05 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-05 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 2e-05 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 6e-05 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-04 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-04 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 3e-04 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 3e-04 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 4e-04 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 5e-04 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 5e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 5e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 6e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 8e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 362 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.98 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.98 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.98 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.9 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.9 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.88 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.87 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.82 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.82 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.81 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.81 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.79 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.79 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.79 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.78 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.78 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.78 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.78 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.77 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.74 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.74 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.74 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.73 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.68 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.68 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.66 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.65 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.64 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.64 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.62 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.56 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.51 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.5 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.49 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.48 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.46 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.46 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.46 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.45 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.44 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.44 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.43 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.39 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.39 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.39 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.37 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.35 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.34 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.33 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.33 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.32 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.31 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.31 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.3 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.27 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.25 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.24 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.21 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.2 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.2 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.19 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.19 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.18 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.17 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.17 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.14 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.13 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.13 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.06 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.06 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.0 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.0 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.99 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.98 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.9 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.89 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.87 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.86 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.79 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.75 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.74 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.71 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.7 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.65 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.59 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.59 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.59 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.59 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.57 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.56 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.54 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.5 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.5 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.5 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.42 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.38 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.35 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.35 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.35 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.32 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.31 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.28 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.28 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.27 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.23 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.22 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.11 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.06 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.05 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.0 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.95 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.93 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.9 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.8 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.8 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.75 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.66 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.62 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.55 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.53 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.48 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.45 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.43 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.34 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.33 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.32 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.29 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.28 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.24 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.13 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.11 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.03 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.94 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.88 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.44 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.43 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.39 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.39 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.35 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.34 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.33 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.24 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.64 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.62 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.61 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.36 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.31 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.21 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.08 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.86 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 94.78 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 94.76 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 94.34 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 94.23 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 94.21 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.2 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 94.17 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 94.1 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 93.88 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 93.77 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.64 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 93.61 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 93.59 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.51 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 93.27 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 93.2 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.17 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 93.0 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 92.99 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 92.98 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 92.63 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 92.55 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 92.19 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 92.11 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 91.42 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 91.24 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 90.89 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 90.67 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 90.5 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 90.44 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 90.22 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 90.12 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 89.63 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 89.34 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 87.79 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 87.27 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 87.17 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 86.74 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 85.47 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 85.21 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 84.68 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 84.54 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 84.54 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 83.54 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 82.58 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 81.52 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 80.65 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=327.83 Aligned_cols=288 Identities=22% Similarity=0.306 Sum_probs=237.7
Q ss_pred cceeeecccCccceeeeEec------CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--e
Q 044557 9 HHCLTTLKGHNSYVSSLALA------GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--K 80 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~------~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~ 80 (362)
..+++.+++|.+.|++|+|. +++|+|||.|++||+||+........ ..+..|...|.++.+.++ .
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~-------~~l~gh~~~v~~~~~~~~~~~ 94 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ-------WSLEGHQLGVVSVDISHTLPI 94 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE-------EEECCCSSCEEEEEECSSSSE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee-------eeeccCCCCEEEEEECCCCCE
Confidence 34667789999999999994 45899999999999999764321111 112345677888888764 5
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
+++++.|++|++||+..+.. + ..+..|...+.+++|+|++++|++|
T Consensus 95 l~s~s~D~~i~lWd~~~~~~-------~---------------------------~~~~~~~~~~~~~~~spdg~~l~~g 140 (321)
T 3ow8_A 95 AASSSLDAHIRLWDLENGKQ-------I---------------------------KSIDAGPVDAWTLAFSPDSQYLATG 140 (321)
T ss_dssp EEEEETTSEEEEEETTTTEE-------E---------------------------EEEECCTTCCCCEEECTTSSEEEEE
T ss_pred EEEEeCCCcEEEEECCCCCE-------E---------------------------EEEeCCCccEEEEEECCCCCEEEEE
Confidence 89999999999999875421 0 1122456678899999999999999
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
+.|+.|++|++++++....+. .|...|.+++|+|+++ +++++.||.|++||+.++. ....+..|..+|.+++|+
T Consensus 141 ~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~s 215 (321)
T 3ow8_A 141 THVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK----LLHTLEGHAMPIRSLTFS 215 (321)
T ss_dssp CTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEEEECCCSSCCCEEEEC
T ss_pred cCCCcEEEEEcCCCceeEEec-CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc----EEEEEcccCCceeEEEEc
Confidence 999999999999988777665 6788999999999997 8899999999999998764 344567899999999999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
|++++|++|+.|++|++||++... ....+.+|...|.+++|+++ ++++++.|++|++|+.. ...++.++.+|
T Consensus 216 pd~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~h 289 (321)
T 3ow8_A 216 PDSQLLVTASDDGYIKIYDVQHAN----LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG--TRTCVHTFFDH 289 (321)
T ss_dssp TTSCEEEEECTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--TTEEEEEECCC
T ss_pred CCCCEEEEEcCCCeEEEEECCCcc----eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC--CCEEEEEEcCC
Confidence 999999999999999999997643 34567899999999999865 89999999999999964 45778899999
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
...|++++|+|++ .+|+|++.|++|++||++
T Consensus 290 ~~~v~~v~~s~~g---------~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 290 QDQVWGVKYNGNG---------SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSCEEEEEECTTS---------SEEEEEETTCCEEEEECC
T ss_pred CCcEEEEEECCCC---------CEEEEEeCCCeEEEEeCC
Confidence 9999999998654 468999999999999985
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=330.79 Aligned_cols=284 Identities=25% Similarity=0.409 Sum_probs=238.0
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~ 86 (362)
...+|.||.++|+++.|+ +.+|+||+.||+|++||+.+... . ..+..|...|.++.+.++ .|++++.
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--~-------~~l~~h~~~V~~v~~~~~~~~l~sgs~ 170 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--E-------RTLKGHTDSVQDISFDHSGKLLASCSA 170 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--C-------EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--E-------EEEeccCCcEEEEEEcCCCCEEEEEeC
Confidence 456789999999999995 67999999999999999876431 1 122346678888988754 5999999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
|++|++||+..... + .++.+|...|.+++|+|++++|++|+.|++|
T Consensus 171 D~~i~iwd~~~~~~-------~---------------------------~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i 216 (410)
T 1vyh_C 171 DMTIKLWDFQGFEC-------I---------------------------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216 (410)
T ss_dssp TSCCCEEETTSSCE-------E---------------------------ECCCCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred CCeEEEEeCCCCce-------e---------------------------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 99999999865321 0 1123588899999999999999999999999
Q ss_pred EEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC----
Q 044557 167 KIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD---- 241 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~---- 241 (362)
++||++++.++..+. +|...|.+++++|++. +++++.|++|++||+.++.. ...+..|...|.+++|+|+
T Consensus 217 ~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~ 291 (410)
T 1vyh_C 217 KMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC----KAELREHRHVVECISWAPESSYS 291 (410)
T ss_dssp EEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECCSCGGG
T ss_pred EEEECCCCcEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce----eeEecCCCceEEEEEEcCccccc
Confidence 999999999888875 7999999999999997 78999999999999987643 3345679999999999996
Q ss_pred ----------------CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 242 ----------------GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 242 ----------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
|.+|++|+.|++|++||+.++. .+..+.+|...|.+++|+++ ++++++.|++|++|+.
T Consensus 292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc----eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 6789999999999999997643 34567899999999999754 8999999999999996
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
. ...++..+.+|...|++++|+|++ .+|+|||.||+|++|++.
T Consensus 368 ~--~~~~~~~~~~h~~~v~~l~~~~~~---------~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 368 K--NKRCMKTLNAHEHFVTSLDFHKTA---------PYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp T--TSCCCEEEECCSSCEEEEEECSSS---------SCEEEEETTSEEEEEC--
T ss_pred C--CCceEEEEcCCCCcEEEEEEcCCC---------CEEEEEeCCCcEEEEeCC
Confidence 3 456788999999999999998764 469999999999999863
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=317.39 Aligned_cols=309 Identities=18% Similarity=0.288 Sum_probs=228.5
Q ss_pred ccceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 8 DHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
..+++++|++|.++|+++.+++++|+||+.|++|++||+..........+.. ..|...|.++.+.++ .|++++
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~-----~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDE-----TAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECT-----TCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEec-----CCccCCEEEEEECCCCCEEEEEe
Confidence 4678899999999999999998899999999999999986532111111100 115668899988764 599999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.|++|++|++......... ......+.+|.+.|.+++|+|++++|++|+.|++
T Consensus 78 ~D~~v~iw~~~~~~~~~~~---------------------------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~ 130 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTFE---------------------------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130 (330)
T ss_dssp TTSCEEEEEC-------CC---------------------------CEEEEEEC----CEEEEEECTTSCEEEEEETTSC
T ss_pred CCCcEEEEEcccCcCcccc---------------------------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCE
Confidence 9999999998532110000 0011234578999999999999999999999999
Q ss_pred EEEEECCC----ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 166 IKIWRTSD----FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 166 i~iwd~~~----~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
|++||++. .+++..+ .+|...|.+++|+|++. +++++.|++|++||...+. ......+.+|...|.+++|+|
T Consensus 131 v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~ 207 (330)
T 2hes_X 131 VWIWETDESGEEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDK 207 (330)
T ss_dssp EEEEECCTTCCCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECC
T ss_pred EEEEeccCCCCCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecC
Confidence 99999943 2455555 47999999999999987 8899999999999976542 133456678999999999999
Q ss_pred C--CCEEEEEcCCCcEEEEeccCCCC----cEEEEEeecC-ccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeee
Q 044557 241 D--GSVLYSGACDRSIIVWEKEEDDG----NILVVGALRG-HTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 241 ~--~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~-h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
+ +.+|++|+.|++|++||+..... .......+.+ |...|.+++|+++ ++++++.|++|++|+..........
T Consensus 208 ~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 208 TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFA 287 (330)
T ss_dssp SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEe
Confidence 8 77999999999999999864321 1123344554 8999999999854 8999999999999996443333333
Q ss_pred -EecCCCC-cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 313 -VLEGHRG-PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 313 -~l~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+.+|.. .|.+++|+|.. ++.+|+|||.||+|+||++..
T Consensus 288 ~~~~~h~~~~v~~v~~~~~~-------~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 288 KRALCHGVYEINVVKWLELN-------GKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EESCTTTTSCEEEEEEC------------CCEEEEETTSEEEEEEC--
T ss_pred ccccccccceEEEEEEecCC-------CceEEEEecCCCcEEEEEecc
Confidence 3468987 99999998731 235799999999999999864
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=316.12 Aligned_cols=290 Identities=20% Similarity=0.344 Sum_probs=233.9
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
..++.++|+||.+.|+++.|+ +++|+||+.||+|++||+.+... .. .+..+...+.++.+.++ .+++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~--~~-------~~~~~~~~v~~~~~s~~~~~l~s 114 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK--VH-------AIPLRSSWVMTCAYAPSGNYVAC 114 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--EE-------EEECSSSCEEEEEECTTSSEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc--ce-------EeecCCccEEEEEECCCCCEEEE
Confidence 356778899999999999994 78999999999999999865331 11 12234567788887654 5999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.|+.|++|++....... .....+.+|.+.|.++.|++++. +++++.|
T Consensus 115 ~~~d~~v~iw~~~~~~~~~------------------------------~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d 163 (340)
T 1got_B 115 GGLDNICSIYNLKTREGNV------------------------------RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD 163 (340)
T ss_dssp EETTCEEEEEETTTCSBSC------------------------------EEEEEEECCSSCEEEEEEEETTE-EEEEETT
T ss_pred EeCCCeEEEEECccCCCcc------------------------------eeEEEecCCCccEEEEEECCCCc-EEEEECC
Confidence 9999999999986533110 00112346889999999998875 8899999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
++|++||+++++++..+. +|...|.+++|+|++. +++|+.||+|++||+.++.. ...+..|..+|++++|+|++
T Consensus 164 ~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~----~~~~~~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 164 TTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC----RQTFTGHESDINAICFFPNG 238 (340)
T ss_dssp SCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE----EEEECCCSSCEEEEEECTTS
T ss_pred CcEEEEECCCCcEEEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee----EEEEcCCcCCEEEEEEcCCC
Confidence 999999999999888775 7999999999999987 78999999999999987643 33456799999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~ 320 (362)
.+|++|+.|++|++||++.... ........+...|.+++|+++ ++++|+.|+.|++|+... ...+..+.+|.+.
T Consensus 239 ~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~--~~~~~~~~~h~~~ 314 (340)
T 1got_B 239 NAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--ADRAGVLAGHDNR 314 (340)
T ss_dssp SEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSC
T ss_pred CEEEEEcCCCcEEEEECCCCcE--EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc--CcEeeEeecCCCc
Confidence 9999999999999999976431 122222334457899999865 899999999999999643 4567889999999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|.+++|+|++ .+|+|||.|++|+|||
T Consensus 315 v~~~~~s~dg---------~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 315 VSCLGVTDDG---------MAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTS---------SCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCC---------CEEEEEcCCccEEecC
Confidence 9999998764 4699999999999997
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-44 Score=319.04 Aligned_cols=295 Identities=17% Similarity=0.160 Sum_probs=225.6
Q ss_pred cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCc--ccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCCc
Q 044557 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSS--ELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDHK 89 (362)
Q Consensus 15 l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg~ 89 (362)
...|...|.+++|+ |++|++++ |+++|+||...... ...............+...|.++.+.++ .+++++.||+
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~ 104 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGA 104 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSE
T ss_pred cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCE
Confidence 34678889999994 78888877 88999998432100 0000000001112234567889988765 5999999999
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIW 169 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iw 169 (362)
|++||++.++.... ......+|.+.|.+++|+|++++|++|+.|++|++|
T Consensus 105 v~lWd~~~~~~~~~------------------------------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 105 VELWELDENETLIV------------------------------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154 (344)
T ss_dssp EEEEEECTTSSCEE------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEeccCCCceeE------------------------------eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 99999976542110 011234699999999999999999999999999999
Q ss_pred ECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-CCEEE
Q 044557 170 RTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD-GSVLY 246 (362)
Q Consensus 170 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~ 246 (362)
|+++++++..+. +|...|.+++|+|++. +++++.||+|++||+.+++....+ ....|...+.+++|+|+ +.+|+
T Consensus 155 d~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 155 DLAQQVVLSSYR-AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI--GCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp ETTTTEEEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC--C----CCCEEEEEECSSCTTEEE
T ss_pred ECCCCcEEEEEc-CcCCceEEEEecCCCCCceeeeccccccccccccccceeeee--ecceeeccceeeeecCCCCcceE
Confidence 999999988875 8999999999999874 789999999999999887654333 22345667899999995 56889
Q ss_pred EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEE
Q 044557 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKC 323 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~ 323 (362)
+|+.|++|++||+++.+. +..+.+|...|.+++|+++ +|+|||.|++|++||... .+ +..+.+|.+.|++
T Consensus 232 sg~~dg~v~~wd~~~~~~----~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~--~~-~~~~~~H~~~V~~ 304 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSC----VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL--SE-LFRSQAHRDFVRD 304 (344)
T ss_dssp EEETTSEEEEEESCC--C----CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--CE-EEEECCCSSCEEE
T ss_pred EeccCCcEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--Cc-EEEEcCCCCCEEE
Confidence 999999999999986542 3457899999999999853 799999999999999643 33 3467899999999
Q ss_pred EEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 324 LAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++|+|++. .+|+|||.|++|++|++..
T Consensus 305 v~~sp~~~--------~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 305 ATWSPLNH--------SLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EEECSSST--------TEEEEEETTSCEEEEECCC
T ss_pred EEEeCCCC--------eEEEEEcCCCeEEEEECCC
Confidence 99988653 4788999999999999854
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=316.87 Aligned_cols=303 Identities=21% Similarity=0.329 Sum_probs=234.5
Q ss_pred ccceeeecccCcc-ceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 8 DHHCLTTLKGHNS-YVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~-~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
..+++++|++|.+ .|++++|+ +++||||+.|++||+||++........ .....|...|.++.+.++ .|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~------~~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS------VLSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE------EECSSCSSCEEEEEECTTSSEEE
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee------eeccccCCcEEEEEECCCCCEEE
Confidence 4568899999998 99999994 789999999999999997653211100 011235678899998764 599
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|+++++|++...... ....+.+|...|.+++|+|++++|++|+.
T Consensus 78 s~s~D~~v~iw~~~~~~~~--------------------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~ 125 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDDFE--------------------------------CVTTLEGHENEVKSVAWAPSGNLLATCSR 125 (345)
T ss_dssp EEETTSCEEEEEECCC-EE--------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCCcEEEEEccCCCeE--------------------------------EEEEccCCCCCceEEEEeCCCCEEEEEEC
Confidence 9999999999998643210 01223468899999999999999999999
Q ss_pred CCcEEEEECCCce---EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 163 DRTIKIWRTSDFK---CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 163 d~~i~iwd~~~~~---~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
|++|++||+++.. ++..+ ..|...|.+++|+|++. +++++.|++|++||...+.. .....+.+|...|.+++|
T Consensus 126 D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~ 202 (345)
T 3fm0_A 126 DKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW--VCCATLEGHESTVWSLAF 202 (345)
T ss_dssp TSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEE
T ss_pred CCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE--EEEEEecCCCCceEEEEE
Confidence 9999999997653 34444 47999999999999987 88999999999999876431 233456789999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCC-----------cEEEEEeecC-ccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDG-----------NILVVGALRG-HTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~-----------~~~~~~~~~~-h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
+|+|++|++|+.|++|++|+...... ....+..+.+ |...|.+++|+++ .+++++.|+.|++|+..
T Consensus 203 sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED 282 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence 99999999999999999999643211 1122334444 8889999999764 89999999999999853
Q ss_pred CCc------ee-eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 305 DRN------YT-CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 305 ~~~------~~-~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
... .. ....+.+|...|++++|+|++. .+|+|||.||+|++|++..+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~--------~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP--------GLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp TTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST--------TEEEEEETTSCEEEEEECC-
T ss_pred CCCCcceeeEEEEeeecccccCcEeEeEEeCCCc--------eEEEEcCCCCcEEEEEecCC
Confidence 221 11 1234569999999999987642 37999999999999999654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-43 Score=308.46 Aligned_cols=289 Identities=21% Similarity=0.346 Sum_probs=232.1
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
.+..++|++|.+.|.+++|+ +++|+||+.||+|++||+++... . ..+..+...+.++.+.++ .|+++
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~--~-------~~~~~~~~~v~~~~~~~~~~~l~s~ 73 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE--V-------RSIQVTETPVRAGKFIARKNWIIVG 73 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--E-------EEEECCSSCEEEEEEEGGGTEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce--e-------EEeeccCCcEEEEEEeCCCCEEEEE
Confidence 45678899999999999995 78999999999999999875321 1 122335667888877654 59999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|++|++||++.++. ...+.+|.+.|.+++|+|++++|++|+.|+
T Consensus 74 s~d~~i~vwd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~ 119 (304)
T 2ynn_A 74 SDDFRIRVFNYNTGEK----------------------------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119 (304)
T ss_dssp ETTSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCCCEEEEEECCCCcE----------------------------------EEEEeCCCCcEEEEEEcCCCCEEEEECCCC
Confidence 9999999999875431 122346889999999999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec--
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC-- 240 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-- 240 (362)
+|++||++++..+.....+|...|.+++|+| ++. +++|+.|++|++||+........+ ...|...|..+.|+|
T Consensus 120 ~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~ 196 (304)
T 2ynn_A 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYVDYYPLP 196 (304)
T ss_dssp CEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---ECCCTTCEEEEEECCST
T ss_pred eEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---ccCCcCcEEEEEEEEcC
Confidence 9999999887444444458999999999998 454 889999999999999766543322 234667899999987
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
++.+|++|+.|++|++||+++.. .+..+.+|...|.+++|+++ +++||+.|++|++|+.. .+++++.+.+|.
T Consensus 197 ~~~~l~s~s~D~~i~iWd~~~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~--~~~~~~~~~~~~ 270 (304)
T 2ynn_A 197 DKPYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS--TYKVEKTLNVGL 270 (304)
T ss_dssp TCCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT--TCCEEEEECCSS
T ss_pred CCCEEEEEcCCCeEEEEeCCCCc----cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC--CCceeeeccCCC
Confidence 77899999999999999997643 45678899999999999875 79999999999999954 466788999999
Q ss_pred CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 319 GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..+++++++|++. ..+|++|+.| .+.+|++.
T Consensus 271 ~~~~~~~~~~~~~-------~~~~asg~~~-g~~~~~~~ 301 (304)
T 2ynn_A 271 ERSWCIATHPTGR-------KNYIASGFDN-GFTVLSLG 301 (304)
T ss_dssp SSEEEEEECTTCG-------GGCEEEEETT-EEEEEECC
T ss_pred ccEEEEEECCCCC-------ceEEEEecCC-ceEEEEec
Confidence 9999999987543 2358888755 56678775
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=310.92 Aligned_cols=294 Identities=23% Similarity=0.356 Sum_probs=233.7
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
...++.++|+||.+.|++++|+ +++|+|||.||+|++||..+... . ..+..+...+.++.+.++ .++
T Consensus 52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~--~-------~~~~~~~~~v~~~~~sp~g~~la 122 (354)
T 2pbi_B 52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK--E-------HAVTMPCTWVMACAYAPSGCAIA 122 (354)
T ss_dssp CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--E-------EEEECSSSCCCEEEECTTSSEEE
T ss_pred cccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc--c-------eEEecCCCCEEEEEECCCCCEEE
Confidence 3446778999999999999994 78999999999999999765321 1 112234456777777654 599
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|+.+++|++......... .....+..|...|.+++|+|+++.|++++.
T Consensus 123 sg~~d~~i~v~~~~~~~~~~~~----------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~ 174 (354)
T 2pbi_B 123 CGGLDNKCSVYPLTFDKNENMA----------------------------AKKKSVAMHTNYLSACSFTNSDMQILTASG 174 (354)
T ss_dssp EESTTSEEEEEECCCCTTCCSG----------------------------GGCEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred EeeCCCCEEEEEEecccccccc----------------------------ccceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence 9999999999998643211000 011223468999999999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
|++|++||+++++++..+. +|...|.+++++|+ +. +++|+.||+|++||+.++.. ...+..|..+|++++|+
T Consensus 175 D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~----~~~~~~h~~~v~~v~~~ 249 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC----VQAFETHESDVNSVRYY 249 (354)
T ss_dssp TSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEEC
T ss_pred CCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE----EEEecCCCCCeEEEEEe
Confidence 9999999999999888775 79999999999874 44 88999999999999987653 33456799999999999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
|++.+|++|+.|++|++||++.... ........+...+.+++|+++ ++++|+.|++|++|+... ..++..+.+|
T Consensus 250 p~~~~l~s~s~D~~v~lwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~--~~~~~~l~~h 325 (354)
T 2pbi_B 250 PSGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK--GSRVSILFGH 325 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CSEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcE--EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC--CceEEEEECC
Confidence 9999999999999999999976421 111122233446788898754 899999999999999643 4567889999
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
.+.|.+++|+|++ .+|+|||.|++|+||+
T Consensus 326 ~~~v~~l~~spdg---------~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ENRVSTLRVSPDG---------TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEEECTTS---------SCEEEEETTSEEEEEC
T ss_pred CCcEEEEEECCCC---------CEEEEEcCCCCEEecC
Confidence 9999999998765 4699999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=311.93 Aligned_cols=292 Identities=15% Similarity=0.164 Sum_probs=222.7
Q ss_pred cccCccceeeeEec--CcEEEEecC------CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEe
Q 044557 15 LKGHNSYVSSLALA--GKFLYTGSS------DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAH 85 (362)
Q Consensus 15 l~gH~~~V~~l~~~--~~~l~t~s~------Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~ 85 (362)
..+|.+.|.+|+|+ |++|||||. |++|++|+......... + ......+...|.++.+.++ .+++++
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~--~---~~~~~~~~~~V~~~~~s~d~~~l~~s 112 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES--L---CTAGVQTEAGVTDVAWVSEKGILVAS 112 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG--G---CSEEEECSSCEEEEEEETTTEEEEEE
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee--E---ecccCCCCCCEEEEEEcCCCCEEEEE
Confidence 45799999999994 889999997 78899998654321110 0 0111235667889988765 588999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.||+|++||+..++.... ......+|.+.|.+++|+|++++|++|+.|+.
T Consensus 113 ~dg~v~lWd~~~~~~~~~------------------------------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~ 162 (357)
T 4g56_B 113 DSGAVELWEILEKESLLV------------------------------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162 (357)
T ss_dssp TTSCEEEC--------CC------------------------------CCEEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred CCCEEEEeeccccceeEE------------------------------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 999999999875432100 00112368899999999999999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG- 242 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~- 242 (362)
|++||+++++++..+. .|...|.+++|+|++. +++++.||+|++||+.++...... ....|...+.+++|+|++
T Consensus 163 v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~--~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 163 VKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI--DFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp EEEEETTTTEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC--CCTTCCSCEEEEEECTTST
T ss_pred EEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee--eeccccccccchhhhhccc
Confidence 9999999999888775 7999999999998874 889999999999999877543322 234567789999999974
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCCCC
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG 319 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~ 319 (362)
.+|++|+.|+.|++||+++.+. +..+.+|...|.+++|+++ +|++++.|++|++||... .+++.. .+|.+
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~--~~~~~~-~~H~~ 312 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDS----AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF--SEVFRD-LSHRD 312 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGG----CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS--CEEEEE-CCCSS
T ss_pred ceEEEeecccceeEEECCCCcE----eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC--CcEeEE-CCCCC
Confidence 6889999999999999986543 3456789999999999753 799999999999999643 444544 48999
Q ss_pred cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 320 PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.|++++|+|.. +.+|+|||.||+|++|++..+
T Consensus 313 ~V~~vafsP~d--------~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 313 FVTGVAWSPLD--------HSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CEEEEEECSSS--------TTEEEEEETTSCEEEEECC--
T ss_pred CEEEEEEeCCC--------CCEEEEEcCCCeEEEEECCCC
Confidence 99999998732 247999999999999999643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=305.33 Aligned_cols=297 Identities=19% Similarity=0.267 Sum_probs=225.3
Q ss_pred ccceeeecccCccceeeeEe--------cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc
Q 044557 8 DHHCLTTLKGHNSYVSSLAL--------AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD 79 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~--------~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (362)
..++..+|+||.+.|+++.| ++++|+||+.|++|++||+....... ........+..|...|.++.+.++
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--~~~~~~~~l~~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--YFGIPHKALTGHNHFVSDLALSQE 87 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS--BSEEEEEEECCCSSCEEEEEECSS
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc--ccccccchhccCCCceEEEEECCC
Confidence 44678899999999999988 46799999999999999986532110 001111233456778899988764
Q ss_pred --eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 80 --KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 80 --~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
.+++++.|++|++||++.+.. ...+.+|...|.+++|+|++++|
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~----------------------------------~~~~~~h~~~v~~v~~sp~~~~l 133 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTT----------------------------------YKRFVGHQSEVYSVAFSPDNRQI 133 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCE----------------------------------EEEEECCCSCEEEEEECSSTTEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcE----------------------------------EEEEcCCCCcEEEEEECCCCCEE
Confidence 589999999999999875431 11234688999999999999999
Q ss_pred EEEECCCcEEEEECCCceEEEee-eccCcccEEEEEEcCCC-----------cEEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESI-TNAHDDAINAVALSDDG-----------DVYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~-~~~h~~~v~~v~~~~~~-----------~~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
++++.|++|++||+......... ...|...|.+++|+|++ .+++++.||.|++||... .....
T Consensus 134 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~ 208 (343)
T 2xzm_R 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYT 208 (343)
T ss_dssp EEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEE
T ss_pred EEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEE
Confidence 99999999999999854332211 12688899999999975 388999999999999432 23345
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCC
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~ 304 (362)
+..|..+|.+++|+|+|++|++|+.|+.|++||+......... + .+...|.+++|+++ .+++++.|+.|++|+..
T Consensus 209 ~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~---~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~ 284 (343)
T 2xzm_R 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE---F-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLM 284 (343)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE---E-ECSSCEEEEEECSSSCEEEEEESSCEEEEESS
T ss_pred EcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee---e-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeC
Confidence 5679999999999999999999999999999998543322221 1 23456999999876 45567778999999964
Q ss_pred CCceeeeeEec-----------CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 305 DRNYTCLAVLE-----------GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 305 ~~~~~~~~~l~-----------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
......+..+. +|...|.+++|+|++ .+|++|+.||+|++|++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---------~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG---------KKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS---------CCEEEEETTSEEEEEEEEE
T ss_pred CCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC---------CeEEEecCCceEEEEEEEc
Confidence 43222112332 799999999998765 3599999999999999864
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=315.19 Aligned_cols=299 Identities=19% Similarity=0.339 Sum_probs=230.7
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
.+..+.++|+||.+.|+++.|+ +++|+|||.|++|++||+.+... . ..+..|...+.++.+.++ .++
T Consensus 54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~--~-------~~~~~h~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK--T-------HAIKLHCPWVMECAFAPNGQSVA 124 (380)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE--E-------EEEECCCTTCCCCEECTTSSEEE
T ss_pred ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--c-------eEEecCCCCEEEEEECCCCCEEE
Confidence 3567889999999999999995 78999999999999999865321 1 122345566777777654 599
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVS 161 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s 161 (362)
+++.|+.+++|++.......... + ....+.+|.+.+.++.|.|++ ..|++|+
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~------~---------------------~~~~~~gh~~~v~~~~~~~~~~~~l~s~s 177 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNM------P---------------------VSRVLTGHKGYASSCQYVPDQETRLITGS 177 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSS------T---------------------TCCBCCCCSSCCCCCBCCSSSSSCEEEEC
T ss_pred EeeCCCcEEEEECCCCccccCCc------c---------------------ceeeccCCCcceEEEEEecCCCCEEEEEC
Confidence 99999999999986532110000 0 001123688889999999874 5799999
Q ss_pred CCCcEEEEECCCceEEEeee----ccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 162 WDRTIKIWRTSDFKCLESIT----NAHDDAINAVALSD-DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~----~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
.|++|++||+++++++..+. .+|...|.++++++ ++. +++|+.||+|++||+..... ....+.+|..+|++
T Consensus 178 ~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~---~~~~~~~h~~~v~~ 254 (380)
T 3iz6_a 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR---AVRTYHGHEGDINS 254 (380)
T ss_dssp TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC---CCEEECCCSSCCCE
T ss_pred CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc---ceEEECCcCCCeEE
Confidence 99999999999998776552 46889999999976 555 88999999999999874322 23345679999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-------ccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCC
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-------HTKSILCMAVVS--DLVCSGSADKTIRIWRGIDR 306 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~ 306 (362)
++|+|++.+|++|+.|++|++||++++.. +..+.. +...|.+++|++ .++++|+.|+.|++||...
T Consensus 255 v~~~p~~~~l~s~s~D~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~- 329 (380)
T 3iz6_a 255 VKFFPDGQRFGTGSDDGTCRLFDMRTGHQ----LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL- 329 (380)
T ss_dssp EEECTTSSEEEEECSSSCEEEEETTTTEE----EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT-
T ss_pred EEEecCCCeEEEEcCCCeEEEEECCCCcE----EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC-
Confidence 99999999999999999999999986432 222222 223478899875 4899999999999999643
Q ss_pred ceeeeeEe----cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 307 NYTCLAVL----EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 307 ~~~~~~~l----~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
...+..+ .+|.+.|.+++|+|++ .+|+|||.|++|++|++...
T Consensus 330 -~~~~~~~~~~~~~h~~~v~~l~~s~dg---------~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 330 -AEMVLNLGTLQNSHEGRISCLGLSSDG---------SALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp -CCEEEEECCSCSSCCCCCCEEEECSSS---------SEEEEECTTSCEEEEECCSS
T ss_pred -CceEEEEecccCCCCCceEEEEECCCC---------CEEEEeeCCCCEEEEecCCC
Confidence 3334444 6899999999998764 46999999999999999754
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=325.77 Aligned_cols=333 Identities=20% Similarity=0.297 Sum_probs=234.7
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
+.++..+|.+|.+.|.+++|+ +++|+||+.|++|++||+.+... ...+.........|.+.|.++.+.++ .|++
T Consensus 179 ~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~--~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s 256 (611)
T 1nr0_A 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256 (611)
T ss_dssp TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE--eeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence 456788999999999999994 78999999999999999865431 11110000000135678999999765 5999
Q ss_pred EecCCcEEEEecCCCCCCcccc-------eeeeeccCCCchhhhhccccccceeeee----eeeEEeeecCceeEEEEec
Q 044557 84 AHQDHKIRVWKINNQEPDHQKY-------TRLATLPTLGDRAIKLLMPKNHVQIRRH----KTCTWVHHVDAVSALALTK 152 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~ 152 (362)
++.|++|++||+..+....... ....... ....+.....++...+++. ....+.+|...|.+++|+|
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp 334 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC
Confidence 9999999999997643211000 0000000 0000011111111222211 1233457999999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeecc-------------------------------------------------
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNA------------------------------------------------- 183 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~------------------------------------------------- 183 (362)
++++|++++.|++|++||+.++++...+...
T Consensus 335 dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~ 414 (611)
T 1nr0_A 335 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP 414 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCC
Confidence 9999999999999999998876543321111
Q ss_pred --------------------------------CcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccc
Q 044557 184 --------------------------------HDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHN 230 (362)
Q Consensus 184 --------------------------------h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~ 230 (362)
|...+.+++|+|+|+ +++|+.|++|++||+..+.. ..... ..|.
T Consensus 415 ~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~--~~~~~-~~h~ 491 (611)
T 1nr0_A 415 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV--SEVKT-IVHP 491 (611)
T ss_dssp EEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE--EEEEE-EECS
T ss_pred cEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce--eeeec-cCCC
Confidence 223467888999987 78899999999999865421 11122 5689
Q ss_pred cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCce
Q 044557 231 SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNY 308 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~ 308 (362)
..|++++|+|||++|++++.|++|++|++.+.. .......+.+|...|.+++|+++ +|+|+|.|++|++|+......
T Consensus 492 ~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~-~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNF-ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT-EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC-ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 999999999999999999999999999997522 11111123459999999999876 899999999999999754322
Q ss_pred eeeeEecCC-CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 309 TCLAVLEGH-RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 309 ~~~~~l~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..+..+.+| ...|.+++|+|++ . |+|||.|++|++|++.+
T Consensus 571 ~~~~~~~~h~~~~v~~v~fs~d~---------~-l~s~~~D~~i~lW~~~~ 611 (611)
T 1nr0_A 571 HPIIIKGAHAMSSVNSVIWLNET---------T-IVSAGQDSNIKFWNVPF 611 (611)
T ss_dssp CCEEETTSSTTSCEEEEEEEETT---------E-EEEEETTSCEEEEECCC
T ss_pred ccchhhccCcccCeeEEEEcCCC---------E-EEEecCCCCEEEEeccC
Confidence 223678899 8999999998763 4 89999999999999854
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=294.89 Aligned_cols=292 Identities=23% Similarity=0.434 Sum_probs=233.8
Q ss_pred cceeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--
Q 044557 4 LSVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-- 79 (362)
Q Consensus 4 ~~~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 79 (362)
+-.++.++..+|.||.+.|++++|+ +++|++|+.||+|++|++.... .. ..+..|...+.++.+.++
T Consensus 8 ~~~~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--~~-------~~~~~h~~~v~~~~~~~~~~ 78 (312)
T 4ery_A 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FE-------KTISGHKLGISDVAWSSDSN 78 (312)
T ss_dssp -CCCCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EE-------EEECCCSSCEEEEEECTTSS
T ss_pred cCCCCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--cc-------hhhccCCCceEEEEEcCCCC
Confidence 3356677888999999999999995 7899999999999999976532 11 122335667888888754
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS 159 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 159 (362)
.|++++.|+.|++||++.... ...+..|...|.+++|+|++++|++
T Consensus 79 ~l~s~~~d~~i~vwd~~~~~~----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~s 124 (312)
T 4ery_A 79 LLVSASDDKTLKIWDVSSGKC----------------------------------LKTLKGHSNYVFCCNFNPQSNLIVS 124 (312)
T ss_dssp EEEEEETTSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECSSSSEEEE
T ss_pred EEEEECCCCEEEEEECCCCcE----------------------------------EEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 599999999999999875431 1123468889999999999999999
Q ss_pred EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 160 VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
|+.|+.|++||+++++++..+. .|..+|.+++|+|++. +++++.||.|++||+.++.....+ ...+..++..++|
T Consensus 125 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~ 200 (312)
T 4ery_A 125 GSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKF 200 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---CCSSCCCEEEEEE
T ss_pred EeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE---eccCCCceEEEEE
Confidence 9999999999999998887775 7889999999999987 889999999999999876533222 2346678999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEE--EEEe---CCeEEEeeCCCcEEEeeCCCCceeeeeE
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC--MAVV---SDLVCSGSADKTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~--~~~~---~~~~~s~s~D~~i~~W~~~~~~~~~~~~ 313 (362)
+|++++|++++.|+.|++||+.+.. .+..+.+|.....+ ..+. +.++++|+.|+.|++|+... ...+..
T Consensus 201 ~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~--~~~~~~ 274 (312)
T 4ery_A 201 SPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT--KEIVQK 274 (312)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTTE----EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT--CCEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCc----EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC--chhhhh
Confidence 9999999999999999999997643 34456677654332 2232 34899999999999999643 456889
Q ss_pred ecCCCCcEEEEEeeecCCccCCCCCceEEEecC--CCCcEEEEecc
Q 044557 314 LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS--LDCDIKVWQIS 357 (362)
Q Consensus 314 l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s--~D~~i~~W~~~ 357 (362)
+.+|.+.|.+++|+|++ .+|++++ .|++|++|+.+
T Consensus 275 ~~~h~~~v~~~~~~p~~---------~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 LQGHTDVVISTACHPTE---------NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCCSSCEEEEEECSSS---------SEEEEEECTTTCCEEEEECC
T ss_pred hhccCCcEEEEeecCcC---------CceEEEEccCCccEEEecCC
Confidence 99999999999998764 4577775 79999999975
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=294.69 Aligned_cols=288 Identities=24% Similarity=0.389 Sum_probs=224.0
Q ss_pred cceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
..+..+|+||.+.|.+|+++ +++|+|||.|++|++||+...... +......+..|...+.++.+.++ .|++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----FGVPVRSFKGHSHIVQDCTLTADGAYALS 82 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----EEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----ccccceEEeCCcccEEEEEECCCCCEEEE
Confidence 46778999999999999995 379999999999999997542211 11111233456778888888765 5999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.|++|++||+..++. ...+.+|...|.+++|+|++++|++|+.|
T Consensus 83 ~s~D~~v~~wd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 128 (319)
T 3frx_A 83 ASWDKTLRLWDVATGET----------------------------------YQRFVGHKSDVMSVDIDKKASMIISGSRD 128 (319)
T ss_dssp EETTSEEEEEETTTTEE----------------------------------EEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred EeCCCEEEEEECCCCCe----------------------------------eEEEccCCCcEEEEEEcCCCCEEEEEeCC
Confidence 99999999999875421 12235788999999999999999999999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-------cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-------DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-------~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
++|++||++. +++..+. +|...|.+++++|.. .+++++.|+.|++||+.+.. ....+.+|..+|.++
T Consensus 129 ~~i~vwd~~~-~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~ 202 (319)
T 3frx_A 129 KTIKVWTIKG-QCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ----IEADFIGHNSNINTL 202 (319)
T ss_dssp SCEEEEETTS-CEEEEEC-CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE----EEEEECCCCSCEEEE
T ss_pred CeEEEEECCC-CeEEEEe-ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch----hheeecCCCCcEEEE
Confidence 9999999975 4555554 799999999998853 38899999999999997653 334456799999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEe
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l 314 (362)
+|+|+|++|++|+.|++|++||+...+ .+..+.. ...|.+++|+++ ++++++ +..+++|+... ...+..+
T Consensus 203 ~~sp~g~~l~s~~~dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~--~~~~~~~ 274 (319)
T 3frx_A 203 TASPDGTLIASAGKDGEIMLWNLAAKK----AMYTLSA-QDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDP--QYLVDDL 274 (319)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTTE----EEEEEEC-CSCEEEEEECSSSSEEEEEE-TTEEEEEEETT--EEEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCc----EEEEecC-CCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCc--Ceeeecc
Confidence 999999999999999999999997643 2333443 457999999876 555555 55699998643 2333333
Q ss_pred --------cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 315 --------EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 315 --------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..|...|.+++|+|++ .+|++|+.|++|+|||+.
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~spdg---------~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 275 RPEFAGYSKAAEPHAVSLAWSADG---------QTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CCCCTTCCGGGCCCEEEEEECTTS---------SEEEEEETTSCEEEEEEE
T ss_pred CccccccccCcCcceeEEEECCCC---------CEEEEeecCceEEEEEEe
Confidence 2457789999998764 469999999999999985
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=301.20 Aligned_cols=298 Identities=24% Similarity=0.428 Sum_probs=227.8
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccc-------ee----EEeecceeEEEEEcCc--ee
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNN-------NI----VAVGKGAVKSLVVLAD--KL 81 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~-------~~----~~~~~~~v~~i~~~~~--~l 81 (362)
+|.+.|.+++|+ |++||+|+ |+++++|++.+.... ..+.... .. ...+...+.++.+.++ .|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV--ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE--EEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE--EEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 699999999994 78999976 789999998764321 1111000 00 0011224778888764 59
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++++.|++|++||+..... ...+.+|...|.+++|+|++++|++++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s 184 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKI----------------------------------VMILQGHEQDIYSLDYFPSGDKLVSGS 184 (393)
T ss_dssp EEEETTSCEEEEETTTTEE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEcCCCeEEEEECCCCcE----------------------------------EEEEccCCCCEEEEEEcCCCCEEEEec
Confidence 9999999999999865321 112346889999999999999999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeCCCCCCcceee---hhhhccccceeEE
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRRSPGNKKHSLV---DVLERHNSGINAL 236 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i 236 (362)
.|++|++||++++++...+. +...+.+++++| ++. +++++.||.|++||+.++.....+. ....+|...|.++
T Consensus 185 ~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v 262 (393)
T 1erj_A 185 GDRTVRIWDLRTGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 262 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred CCCcEEEEECCCCeeEEEEE--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence 99999999999998877664 567899999998 676 8899999999999998765332221 1124688999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCc--------EEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGN--------ILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDR 306 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~ 306 (362)
+|+|+|++|++|+.|++|++||+...... ......+.+|...|.++++++ .++++|+.|+.|++|+..
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~-- 340 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK-- 340 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT--
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC--
Confidence 99999999999999999999998753211 112345678999999999975 489999999999999964
Q ss_pred ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 307 NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 307 ~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...++..+.+|...|.+++|++.. ...+.+.+|+|||.||+|+||++..
T Consensus 341 ~~~~~~~l~~h~~~v~~v~~~~~~---~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 341 SGNPLLMLQGHRNSVISVAVANGS---SLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSC---TTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCeEEEEECCCCCCEEEEEecCCc---CcCCCCCEEEEECCCCcEEECcccc
Confidence 356678899999999999998753 2345667899999999999999853
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=290.08 Aligned_cols=291 Identities=23% Similarity=0.361 Sum_probs=227.1
Q ss_pred ceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 10 HCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
++..||+||.+.|++|+|+ +++|||||.|++||+||+......... ....+..|...|.++.+.++ .|+++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~----~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI----PQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE----EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce----eeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 4667899999999999995 579999999999999998764321111 11223446778999988765 59999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|+.|++|+...... ......+...+..+.+++++++|++++.|+
T Consensus 105 ~~d~~i~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 150 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTT----------------------------------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 150 (340)
T ss_dssp ETTSEEEEEETTTTEE----------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred cccccceEEeecccce----------------------------------eeeecCCCCceeEEEEeecCccceeecCCC
Confidence 9999999999764321 011123456677888999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc---EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD---VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~---~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
.+++||+............|...+..++|++++. +++++.|+.|++||+.++. ....+.+|..+|++++|+|+
T Consensus 151 ~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~s~~ 226 (340)
T 4aow_A 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHIGHTGYLNTVTVSPD 226 (340)
T ss_dssp CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTT
T ss_pred eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc----eeeEecCCCCcEEEEEECCC
Confidence 9999999877665555568999999999987652 6789999999999998764 34455679999999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeee--------
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLA-------- 312 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~-------- 312 (362)
+++|++|+.|+.|++||+.+.. .+..+.+ ...|.++.++++ .+++++.|+.|++|+.... .++.
T Consensus 227 ~~~l~s~s~Dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~ 299 (340)
T 4aow_A 227 GSLCASGGKDGQAMLWDLNEGK----HLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGK--IIVDELKQEVIS 299 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTTE----EEEEEEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTT--EEEEEECCC---
T ss_pred CCEEEEEeCCCeEEEEEeccCc----eeeeecC-CceEEeeecCCCCceeeccCCCEEEEEECCCC--eEEEecccccee
Confidence 9999999999999999997643 2333443 457889999865 7888899999999996432 2222
Q ss_pred -EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 313 -VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 313 -~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...+|...|++++|+|++ .+|+|||.||+|+|||++.
T Consensus 300 ~~~~~h~~~v~~l~~s~dg---------~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 300 TSSKAEPPQCTSLAWSADG---------QTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp ----CCCCCEEEEEECTTS---------SEEEEEETTSCEEEEEEEC
T ss_pred eeccCCCCCEEEEEECCCC---------CEEEEEeCCCEEEEEeCCC
Confidence 345899999999998764 4699999999999999864
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=313.17 Aligned_cols=295 Identities=18% Similarity=0.234 Sum_probs=230.9
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
+.+...+|.||.+.|++++|+ |++||||+.|++|||||+.+....... .+..|.+.|.++.+.++ .|++
T Consensus 48 ~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~-------~~~~~~~~v~~v~fs~dg~~l~~ 120 (611)
T 1nr0_A 48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-------TIPVFSGPVKDISWDSESKRIAA 120 (611)
T ss_dssp CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-------EEECSSSCEEEEEECTTSCEEEE
T ss_pred CcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE-------eecccCCceEEEEECCCCCEEEE
Confidence 345777899999999999995 789999999999999998643322111 12345678999999875 4777
Q ss_pred EecC----CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEE
Q 044557 84 AHQD----HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLY 158 (362)
Q Consensus 84 ~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~ 158 (362)
++.+ +.|++||..... .++.+|.+.|.+++|+|++. .|+
T Consensus 121 ~~~~~~~~~~v~~wd~~~~~------------------------------------~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 121 VGEGRERFGHVFLFDTGTSN------------------------------------GNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp EECCSSCSEEEEETTTCCBC------------------------------------BCCCCCSSCEEEEEECSSSSCEEE
T ss_pred EECCCCceeEEEEeeCCCCc------------------------------------ceecCCCCCceEEEECCCCCeEEE
Confidence 7754 478888742100 01236889999999999987 699
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeeh---hhhcccccee
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVD---VLERHNSGIN 234 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~---~~~~h~~~v~ 234 (362)
+|+.|++|++||..++++...+. +|...|.+++|+|+|. +++++.|++|++||..++.....+.. ...+|...|.
T Consensus 165 s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~ 243 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243 (611)
T ss_dssp EEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred EEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE
Confidence 99999999999999988887764 7999999999999997 88999999999999887754322211 0116999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEe
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l 314 (362)
+++|+|+|++|++++.|++|++||+.+.+. ...+..-..+...+..+.+.+..+++++.|+.|++|+... ..+...+
T Consensus 244 ~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~--~~~~~~~ 320 (611)
T 1nr0_A 244 GLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL--GSIDQVR 320 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT--TEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCce-eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC--CCcceEE
Confidence 999999999999999999999999976432 1111111223445667778888999999999999999643 3467788
Q ss_pred cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 315 EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 315 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+|...|++++|+|++ .+|+||+.|++|++||+..
T Consensus 321 ~gh~~~v~~l~~spdg---------~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 321 YGHNKAITALSSSADG---------KTLFSADAEGHINSWDIST 355 (611)
T ss_dssp CCCSSCEEEEEECTTS---------SEEEEEETTSCEEEEETTT
T ss_pred cCCCCCEEEEEEeCCC---------CEEEEEeCCCcEEEEECCC
Confidence 9999999999998764 4699999999999999853
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=309.10 Aligned_cols=279 Identities=30% Similarity=0.512 Sum_probs=229.8
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
+.+++.++.+|.+.|.+++++ +++|++++.|++|++||..... . . .+..+...+.++.+.++ .+++
T Consensus 292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~--~-~-------~~~~~~~~v~~~~~s~~g~~l~~ 361 (577)
T 2ymu_A 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH--L-Q-------TLTGHSSSVWGVAFSPDGQTIAS 361 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE--E-E-------EECCCSSCEEEEEECTTSSEEEE
T ss_pred CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--e-E-------EEeCCCCCEEEEEECCCCCEEEE
Confidence 456778899999999999994 7899999999999999975421 1 1 11234567788888765 5899
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.|++|++|+..... ...+..|...|.+++|+|++++|++++.|
T Consensus 362 ~~~dg~v~~~~~~~~~-----------------------------------~~~~~~~~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 362 ASDDKTVKLWNRNGQL-----------------------------------LQTLTGHSSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp EETTSEEEEEETTCCE-----------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EeCCCEEEEEcCCCCE-----------------------------------EEEecCCCCCeEEEEECCCCCEEEEEeCC
Confidence 9999999999853210 11234578899999999999999999999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
+.|++||.. ++.+..+. .|...|.+++|+|++. +++++.|++|++||... . ....+..|..+|.+++|+|++
T Consensus 407 ~~v~~~~~~-~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~----~~~~~~~~~~~v~~~~~spd~ 479 (577)
T 2ymu_A 407 KTVKLWNRN-GQLLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q----LLQTLTGHSSSVRGVAFSPDG 479 (577)
T ss_dssp SEEEEECTT-CCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C----EEEEEECCSSCEEEEEECTTS
T ss_pred CEEEEEeCC-CCEEEEec-CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C----EEEEEcCCCCCEEEEEEcCCC
Confidence 999999964 55666664 7999999999999987 78999999999999643 2 334556799999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~ 320 (362)
++|++++.|+.|++||... + .+..+.+|...|.+++|+++ +|++++.|+.|++|+. ...++..+.+|.+.
T Consensus 480 ~~las~~~d~~i~iw~~~~-~----~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~---~~~~~~~~~~h~~~ 551 (577)
T 2ymu_A 480 QTIASASDDKTVKLWNRNG-Q----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSS 551 (577)
T ss_dssp CEEEEEETTSEEEEEETTS-C----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT---TSCEEEEEECCSSC
T ss_pred CEEEEEeCCCEEEEEcCCC-C----EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC---CCCEEEEEcCCCCC
Confidence 9999999999999999642 2 34567899999999999865 8999999999999994 34678899999999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|++++|+|++ .+|+|||.|++|++||
T Consensus 552 v~~~~fs~dg---------~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 552 VWGVAFSPDG---------QTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECTTS---------SCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCC---------CEEEEEeCCCEEEEeC
Confidence 9999998765 4589999999999997
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-39 Score=289.62 Aligned_cols=298 Identities=13% Similarity=0.137 Sum_probs=214.2
Q ss_pred cceeeeEec--CcEEEEecCCC-------eEEEeecCCCCcccceeeec-cceeEEeecceeEEEEEcCceeEEE-----
Q 044557 20 SYVSSLALA--GKFLYTGSSDN-------EVRSWDCNTFSSELDQEFLS-NNNIVAVGKGAVKSLVVLADKLFSA----- 84 (362)
Q Consensus 20 ~~V~~l~~~--~~~l~t~s~Dg-------~i~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~l~s~----- 84 (362)
-+|.+++|. +++||+||.|. .|++|++..........+.. ....+..+...+.++.+.++.++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~ 94 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS 94 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence 489999994 78999987644 59999986543221111110 0111122344566676666655554
Q ss_pred ------ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE
Q 044557 85 ------HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 85 ------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
+.|+++++|++............... .....+...+.+++|+|||++++
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~v~fSpDg~~la 149 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDF-------------------------DASTNADDYTKLVYISREGTVAA 149 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEEECS-------------------------SCCCCTTCCEEEEEECTTSSCEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeeeece-------------------------eecCCcccCEEEEEEcCCCCEEE
Confidence 45778899987654321111000000 00012345678999999999887
Q ss_pred EEE--CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 159 SVS--WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 159 s~s--~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
+++ .|++|+|||+++++++..+. |...|.+++|+|+|++++.+.++.+++|+..++.... ......|...|.++
T Consensus 150 ~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~v 225 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA--RKTDFDKNWSLSKI 225 (365)
T ss_dssp EEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE--EECCCCTTEEEEEE
T ss_pred EEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEeccceeEEEEEeccCccee--eeecCCCCCCEEEE
Confidence 554 78999999999999887764 7778999999999985554456667777776654322 22345688899999
Q ss_pred EEecCCCEEEEEcCCC----cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceee
Q 044557 237 ALSCDGSVLYSGACDR----SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTC 310 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~ 310 (362)
+|+|++.++++++.|+ .++.|+.............+.+|...|.+++|+++ +|++|+.|++|+|||.. ++++
T Consensus 226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~--~~~~ 303 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLK--DLSM 303 (365)
T ss_dssp EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETT--TTEE
T ss_pred EEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECC--CCcE
Confidence 9999999999999888 58889887654444445667889999999999875 89999999999999964 4566
Q ss_pred eeE-ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 311 LAV-LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 311 ~~~-l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+.. +.+|...|++++|+|++ .+|||||.|++||||+++
T Consensus 304 ~~~~~~gH~~~V~~v~fSpdg---------~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 304 SKIFKQAHSFAITEVTISPDS---------TYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEETTSSSSCEEEEEECTTS---------CEEEEEETTSEEEEEECC
T ss_pred EEEecCcccCCEEEEEECCCC---------CEEEEEeCCCeEEEEEcC
Confidence 776 57999999999998765 479999999999999995
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=275.32 Aligned_cols=254 Identities=19% Similarity=0.304 Sum_probs=201.1
Q ss_pred eeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCc
Q 044557 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHK 89 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~ 89 (362)
+.++.+|.+.|++++|+ |++||||+.|++|++||++......
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~------------------------------------ 45 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKL------------------------------------ 45 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCC------------------------------------
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEE------------------------------------
Confidence 45688999999999994 8899999999999999964311000
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--CCCEEEEEECCCcEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK--DETLLYSVSWDRTIK 167 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~ 167 (362)
..++.+|.+.|.+++|+| ++++|++|+.|++|+
T Consensus 46 ---------------------------------------------~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 46 ---------------------------------------------IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp ---------------------------------------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ---------------------------------------------EEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 001235888999999976 389999999999999
Q ss_pred EEECCCce--EEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-
Q 044557 168 IWRTSDFK--CLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD- 241 (362)
Q Consensus 168 iwd~~~~~--~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~- 241 (362)
+||+++++ .+..+ ..|...|.+++|+|+ +. +++++.||+|++||+.+..... ...+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~--~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 81 IWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC--CEEEECCSSCEEEEEECCCC
T ss_pred EEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee--eeeeecccCccceEeecCCc
Confidence 99998764 33333 368999999999997 54 8899999999999997653211 1234679999999999997
Q ss_pred ------------CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-----eEEEeeCCCcEEEeeCC
Q 044557 242 ------------GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-----LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 242 ------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~s~s~D~~i~~W~~~ 304 (362)
+++|++|+.|++|++||+............+.+|...|.+++|+++ +++|+|.|++|++|+..
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 5799999999999999998755444456678999999999999863 79999999999999964
Q ss_pred CCcee-eeeEe--cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 305 DRNYT-CLAVL--EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 305 ~~~~~-~~~~l--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..... ....+ .+|...|++++|+|++ .+|++|+.|++|+||+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSG---------NVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSS---------CCEEEEETTSCEEEEEECT
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCC---------CEEEEEcCCCcEEEEEECC
Confidence 42211 11233 5789999999998765 4699999999999999863
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-38 Score=275.46 Aligned_cols=243 Identities=22% Similarity=0.323 Sum_probs=203.1
Q ss_pred EEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 64 VAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 64 ~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
+..|...|.++.+.++ .|++++.||+|++||+..+.. ...+..|
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~----------------------------------~~~~~~~ 54 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE----------------------------------VRSIQVT 54 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE----------------------------------EEEEECC
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce----------------------------------eEEeecc
Confidence 4457788999999875 499999999999999865321 1123457
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
...|.+++|+|++++|++|+.|++|++||+++++++..+. +|...|.+++|+|++. +++|+.||+|++||+.++.
T Consensus 55 ~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--- 130 (304)
T 2ynn_A 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--- 130 (304)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---
T ss_pred CCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---
Confidence 7889999999999999999999999999999999888775 7999999999999987 8899999999999987653
Q ss_pred eeehhhhccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC----CeEEEeeCC
Q 044557 221 SLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS----DLVCSGSAD 295 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~s~s~D 295 (362)
.+...+.+|...|.+++|+| ++..|++|+.|++|++||+......... ..+|...+.++.+.+ .++++++.|
T Consensus 131 ~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~s~D 207 (304)
T 2ynn_A 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYVDYYPLPDKPYMITASDD 207 (304)
T ss_dssp EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---ECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---ccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence 23345678999999999999 6789999999999999999765543322 345667788888753 389999999
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++|++||.. ...++.++.+|...|.+++|+|++ .+|+|||.||+|++||+..
T Consensus 208 ~~i~iWd~~--~~~~~~~~~~h~~~v~~~~~~p~~---------~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 208 LTIKIWDYQ--TKSCVATLEGHMSNVSFAVFHPTL---------PIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp SEEEEEETT--TTEEEEEEECCSSCEEEEEECSSS---------SEEEEEETTSCEEEEETTT
T ss_pred CeEEEEeCC--CCccceeeCCCCCCEEEEEECCCC---------CEEEEEcCCCeEEEEECCC
Confidence 999999964 457789999999999999998764 4699999999999999854
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=305.16 Aligned_cols=290 Identities=23% Similarity=0.340 Sum_probs=222.5
Q ss_pred ceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 10 HCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
++...|++|.+.|++|++. +++|+|||.|++|++||+......... ....+..|...|.++.+.++ .|+++
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~----~~~~~~~h~~~v~~v~~s~~g~~l~sg 448 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV----AQRRLTGHSHFVEDVVLSSDGQFALSG 448 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE----EEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc----ccceecCCCCcEEEEEECCCCCEEEEE
Confidence 4556799999999999995 468999999999999998653221110 11234456778999988764 59999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|++|++||+..+.. ...+.+|...|.+++|+|++++|++|+.|+
T Consensus 449 s~Dg~v~vwd~~~~~~----------------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~ 494 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVS----------------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDR 494 (694)
T ss_dssp ETTSEEEEEETTTTEE----------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred eCCCcEEEEECCCCcc----------------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 9999999999865321 112357899999999999999999999999
Q ss_pred cEEEEECCCceEEEee--eccCcccEEEEEEcCCC---cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 165 TIKIWRTSDFKCLESI--TNAHDDAINAVALSDDG---DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~--~~~h~~~v~~v~~~~~~---~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
+|++||.......... ..+|...|.+++|+|++ .+++++.|++|++||+.+.. +...+.+|...|++++|+
T Consensus 495 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~h~~~v~~v~~s 570 (694)
T 3dm0_A 495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK----LRSTLAGHTGYVSTVAVS 570 (694)
T ss_dssp CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEEC
T ss_pred EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEe
Confidence 9999998765433221 23688899999999986 38899999999999998654 334556899999999999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
|++++|++|+.|++|++||+.+.. .+..+. +...|.+++|+++ .+++++.|+.|++|+... ..++..+..|.
T Consensus 571 pdg~~l~sg~~Dg~i~iwd~~~~~----~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~--~~~~~~~~~~~ 643 (694)
T 3dm0_A 571 PDGSLCASGGKDGVVLLWDLAEGK----KLYSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLES--KSIVEDLKVDL 643 (694)
T ss_dssp TTSSEEEEEETTSBCEEEETTTTE----EEECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTT--TEEEEEECCCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCc----eEEEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCC--CCChhhhcccc
Confidence 999999999999999999997643 233444 3456899999876 555666778899999654 33444443221
Q ss_pred -------------------CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 319 -------------------GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 319 -------------------~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
-.+++++|+|++ .+|+|||.||+|+||++.
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg---------~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 644 KAEAEKADNSGPAATKRKVIYCTSLNWSADG---------STLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp C----------------CCCCEEEEEECTTS---------SEEEEEETTSEEEEEEC-
T ss_pred ccccccccccccccCCceeEEeeeEEEcCCC---------CEEEEEcCCCeEEEEecc
Confidence 236788887654 579999999999999985
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=296.98 Aligned_cols=282 Identities=30% Similarity=0.518 Sum_probs=232.2
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
+.+++.++.+|...|.++.|. ++++++++.|++|++||.+.. ... .+..|...+.++.+.++ .+++
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~---~~~-------~~~~h~~~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ---LLQ-------TLTGHSSSVWGVAFSPDGQTIAS 320 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEE-------EECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---EEE-------EEecCCCCeEEEEECCCCCEEEE
Confidence 456788899999999999994 789999999999999996431 111 12235667888888764 5899
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.|++|++|+..... + ..+..|...+.+++|+|++++|++++.|
T Consensus 321 ~~~d~~i~~w~~~~~~--------~---------------------------~~~~~~~~~v~~~~~s~~g~~l~~~~~d 365 (577)
T 2ymu_A 321 ASDDKTVKLWNRNGQH--------L---------------------------QTLTGHSSSVWGVAFSPDGQTIASASDD 365 (577)
T ss_dssp EETTSCEEEEETTSCE--------E---------------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeCCCeEEEEeCCCCe--------e---------------------------EEEeCCCCCEEEEEECCCCCEEEEEeCC
Confidence 9999999999975321 0 1123577889999999999999999999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
+.|++||.. ++.+..+. .|...|.+++|+|+++ +++++.|+.|++||.. +. ....+..|..+|++++|+||+
T Consensus 366 g~v~~~~~~-~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~----~~~~~~~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 366 KTVKLWNRN-GQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ----LLQTLTGHSSSVWGVAFSPDD 438 (577)
T ss_dssp SEEEEEETT-CCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CC----EEEEEECCSSCEEEEEECTTS
T ss_pred CEEEEEcCC-CCEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CC----EEEEecCCCCCeEEEEECCCC
Confidence 999999964 55666664 7899999999999997 8899999999999953 22 344566799999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~ 320 (362)
++|++++.|++|++||... + .+..+.+|...|.+++|+++ ++++++.|+.|++|+. ..+++..+.+|...
T Consensus 439 ~~l~~~~~d~~v~~w~~~~-~----~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~---~~~~~~~~~~h~~~ 510 (577)
T 2ymu_A 439 QTIASASDDKTVKLWNRNG-Q----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSS 510 (577)
T ss_dssp SEEEEEETTSEEEEEETTS-C----EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET---TSCEEEEEECCSSC
T ss_pred CEEEEEcCCCEEEEEECCC-C----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC---CCCEEEEEeCCCCC
Confidence 9999999999999999643 1 34567889999999999865 8999999999999994 34678899999999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|++++|+|++ .+|++|+.||.|++||...
T Consensus 511 v~~l~~s~dg---------~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 511 VRGVAFSPDG---------QTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EEEEEECTTS---------SCEEEEETTSEEEEECTTS
T ss_pred EEEEEEcCCC---------CEEEEEECcCEEEEEeCCC
Confidence 9999998764 4699999999999999753
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=283.22 Aligned_cols=307 Identities=17% Similarity=0.205 Sum_probs=234.0
Q ss_pred cceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---------c
Q 044557 9 HHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---------D 79 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---------~ 79 (362)
.++.++|++|.+.|++++|++++|++|+.||+|++||+.......... ....+..+...+.++.+.+ +
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKD---KSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGG---GEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCC---cceEEecCCCcEEEEEEecccccCCcccc
Confidence 356778999999999999998999999999999999987643111000 0112234567888888764 4
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee-----cCceeEEEEe---
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH-----VDAVSALALT--- 151 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~--- 151 (362)
.|++++.|+.|++|++......... ....+..| ...|.+++|+
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKV-----------------------------IFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCE-----------------------------EEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred EEEEEcCCCCEEEEEccCCcccccc-----------------------------cceeecccccccCCCcEEEEEEeecc
Confidence 5899999999999998754321000 00112234 4789999999
Q ss_pred -cCCCE-EEEEECCCcEEEEECCC------ceEEE-----eee------ccCcccEEEEEEcCCCcEEEEeCCCeEEEEe
Q 044557 152 -KDETL-LYSVSWDRTIKIWRTSD------FKCLE-----SIT------NAHDDAINAVALSDDGDVYTGSADKKIKVWR 212 (362)
Q Consensus 152 -~~~~~-l~s~s~d~~i~iwd~~~------~~~~~-----~~~------~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~ 212 (362)
|++++ |++++.|+.|++||++. .+.+. .+. ..|...|.+++|+|++.+++++.||.|++||
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 213 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEE
Confidence 99999 99999999999999987 55444 442 3578899999999988667889999999999
Q ss_pred CCCCCCcceeehhhhc---c---ccceeEEEEecCCCEEEEEcCC---CcEEEEeccCCCCcEEEEEeecC---------
Q 044557 213 RSPGNKKHSLVDVLER---H---NSGINALALSCDGSVLYSGACD---RSIIVWEKEEDDGNILVVGALRG--------- 274 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~---h---~~~v~~i~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~--------- 274 (362)
+.++. ....+.. | ..+|.+++|+|++.+|++++.| +.|++||+.+.. .+..+.+
T Consensus 214 ~~~~~----~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~----~~~~~~~~~~~~~~~~ 285 (397)
T 1sq9_A 214 LSTLR----PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE----RIGSLSVPTHSSQASL 285 (397)
T ss_dssp TTTTE----EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC----EEEEECBC--------
T ss_pred CCCCc----eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc----ccceeccCcccccccc
Confidence 98754 2334445 7 8899999999999999999999 999999998643 3445666
Q ss_pred ----ccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEec------CC---------------CCcEEEEEee
Q 044557 275 ----HTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLE------GH---------------RGPVKCLAAA 327 (362)
Q Consensus 275 ----h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~------~h---------------~~~v~~~~~~ 327 (362)
|...|.+++|+++ ++++++.|+.|++|+.. ..+++..+. +| ...|.+++|+
T Consensus 286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 363 (397)
T 1sq9_A 286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK--TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 363 (397)
T ss_dssp CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT--TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred cccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC--CCceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence 8999999999854 89999999999999964 356788888 88 9999999999
Q ss_pred ecCCccCC-CCCceEEEecCCCCcEEEEecc
Q 044557 328 IDNDRCDS-SDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 328 ~~~~~~~~-~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|++..... ...+.+|++|+.||.|++|+++
T Consensus 364 ~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 364 KKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp CTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cccccccccccccceEEEecCCCcEEEEEcC
Confidence 87532111 0122579999999999999985
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-37 Score=278.50 Aligned_cols=296 Identities=13% Similarity=0.122 Sum_probs=222.0
Q ss_pred ccceeeecccCccceeeeEec--C-cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---cee
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--G-KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKL 81 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~-~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l 81 (362)
+.++.+++.+|.+.|.+++|+ + ++|++|+.||+|++||+.+..... .+. ...+...+.++.+.+ +.+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~-----~~~h~~~v~~~~~~~~~~~~l 134 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS--FIQ-----GMGPGDAITGMKFNQFNTNQL 134 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE--EEC-----CCSTTCBEEEEEEETTEEEEE
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce--eee-----cCCcCCceeEEEeCCCCCCEE
Confidence 456788899999999999995 5 799999999999999987543211 110 012567888998876 359
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++++.|++|++||+.... ...+. ....|...|.+++|+|++++|++|+
T Consensus 135 ~s~~~d~~i~iwd~~~~~--------~~~~~------------------------~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSGSV--------IQVFA------------------------KTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp EEEETTTEEEEEETTSCE--------EEEEE------------------------CCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred EEEeCCCEEEEEECCCCc--------eEEEe------------------------ccCCCCCCeEEEEECCCCCEEEEEC
Confidence 999999999999986321 00000 0013457899999999999999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
.|+.|++||++ ++.+..+. .|...|.+++|+|++. +++++.|+.|++||+.+......+...+ .|..+|.+++|+
T Consensus 183 ~d~~i~i~d~~-~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 183 STGRLLLLGLD-GHEIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp TTSEEEEEETT-SCEEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred CCCCEEEEECC-CCEEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence 99999999994 55666664 7999999999999986 7899999999999998754333344333 589999999999
Q ss_pred c-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEe---ecCccc----------eeEEEEEeCC-eEEEeeCCCcEEEeeCC
Q 044557 240 C-DGSVLYSGACDRSIIVWEKEEDDGNILVVGA---LRGHTK----------SILCMAVVSD-LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 240 ~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~~h~~----------~v~~~~~~~~-~~~s~s~D~~i~~W~~~ 304 (362)
| ++.+|++++.|+.|++||+.+.......... ...|.. .+..++++++ .+ +++.|+.|++|+..
T Consensus 260 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN 338 (383)
T ss_dssp TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence 9 9999999999999999999875543222211 011222 2334555443 23 88899999999964
Q ss_pred CCceeeeeEecC--CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 305 DRNYTCLAVLEG--HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 305 ~~~~~~~~~l~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
. ..++..+.+ |...+..++|+|++ .+|++|+ |+.|++||++.
T Consensus 339 ~--~~~~~~l~~~~~~~~~~~~~~s~~g---------~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 S--GGLVHQLRDPNAAGIISLNKFSPTG---------DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp T--CCEEEEECBTTBCSCCCEEEECTTS---------SEEEEEE-TTEEEEEECC-
T ss_pred C--CceeeeecCCCCCceEEEEEEecCc---------cEEEEec-CCcEEEEecCC
Confidence 3 456778876 56778888997654 4688997 99999999974
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-37 Score=276.00 Aligned_cols=294 Identities=14% Similarity=0.156 Sum_probs=224.5
Q ss_pred cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcE
Q 044557 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKI 90 (362)
Q Consensus 15 l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i 90 (362)
+..|.++|.+++|+ +++|++|+.|+.|++||+.+...... ..+..|...+.++.+.+ +.+++++.|+.|
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV-------HELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 76 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE-------EEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEee-------eeecCCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence 45699999999994 78999999999999999865321111 12234567888888875 469999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
++|++...+.. .......|...|.+++|+|++++|++++.|+.|++||
T Consensus 77 ~vwd~~~~~~~--------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d 124 (372)
T 1k8k_C 77 YVWTLKGRTWK--------------------------------PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 124 (372)
T ss_dssp EEEEEETTEEE--------------------------------EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred EEEECCCCeee--------------------------------eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99998643210 0011134778899999999999999999999999999
Q ss_pred CCCce---EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC--------------Ccceeehhhhccccc
Q 044557 171 TSDFK---CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN--------------KKHSLVDVLERHNSG 232 (362)
Q Consensus 171 ~~~~~---~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~--------------~~~~~~~~~~~h~~~ 232 (362)
++..+ ....+...|...|.+++|+|++. +++++.||.|++||+.... ........+..|..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
T 1k8k_C 125 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 204 (372)
T ss_dssp EETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred ecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence 98765 34445567899999999999987 8899999999999964211 112334455678899
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC--Cce
Q 044557 233 INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID--RNY 308 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~--~~~ 308 (362)
|.+++|+|++.+|++++.|+.|++||+.+.+ .+..+.+|...|.+++|+++ +++++ .|+.|++|+... ..+
T Consensus 205 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~ 279 (372)
T 1k8k_C 205 VHGVCFSANGSRVAWVSHDSTVCLADADKKM----AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKL 279 (372)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEEGGGTT----EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCc----eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceE
Confidence 9999999999999999999999999998654 34556788889999999754 55555 999999999654 222
Q ss_pred eee------------------------------------eEe-cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcE
Q 044557 309 TCL------------------------------------AVL-EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351 (362)
Q Consensus 309 ~~~------------------------------------~~l-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i 351 (362)
.++ ..+ .+|.+.|+++++.+... .++.+|+|||.||+|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g-----~~~~~l~s~~~Dg~i 354 (372)
T 1k8k_C 280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK-----AKCSQFCTTGMDGGM 354 (372)
T ss_dssp EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT-----TSCSEEEEEETTSEE
T ss_pred EEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCC-----cceeeEEEecCCCce
Confidence 111 233 49999999999765321 012579999999999
Q ss_pred EEEecc
Q 044557 352 KVWQIS 357 (362)
Q Consensus 352 ~~W~~~ 357 (362)
++|++.
T Consensus 355 ~~W~~~ 360 (372)
T 1k8k_C 355 SIWDVR 360 (372)
T ss_dssp EEEEHH
T ss_pred EEEEec
Confidence 999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=265.75 Aligned_cols=285 Identities=23% Similarity=0.363 Sum_probs=227.2
Q ss_pred eccceeeecccCccceeeeEe-cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 7 VDHHCLTTLKGHNSYVSSLAL-AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~-~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
...++.++|++|.+.|+++++ ++++|++|+.||+|++||+.+.. .. .....+...+.++.+.++ .+++
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~--~~-------~~~~~~~~~v~~~~~~~~~~~l~~ 76 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQW--LG-------TVVYTGQGFLNSVCYDSEKELLLF 76 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSE--EE-------EEEEECSSCEEEEEEETTTTEEEE
T ss_pred ccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCE--EE-------EEeecCCccEEEEEECCCCCEEEE
Confidence 456788999999999999998 57899999999999999986532 11 122345678888888754 5999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.|+.|++|++....... ....+..|...|.+++| ++++|++++.|
T Consensus 77 ~~~dg~i~~~~~~~~~~~~-------------------------------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d 123 (313)
T 3odt_A 77 GGKDTMINGVPLFATSGED-------------------------------PLYTLIGHQGNVCSLSF--QDGVVISGSWD 123 (313)
T ss_dssp EETTSCEEEEETTCCTTSC-------------------------------C-CEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred ecCCCeEEEEEeeecCCCC-------------------------------cccchhhcccCEEEEEe--cCCEEEEEeCC
Confidence 9999999999986533110 01122357888999998 57799999999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc-cccceeEEEEec
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER-HNSGINALALSC 240 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~ 240 (362)
+.|++|| ..+....+. .|...+.++++.| ++. +++++.||.|++||... ....+.. |...|.+++|+|
T Consensus 124 ~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~i~~~~~~~ 194 (313)
T 3odt_A 124 KTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK------VIKTFSGIHNDVVRHLAVVD 194 (313)
T ss_dssp SEEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE------EEEEECSSCSSCEEEEEEEE
T ss_pred CCEEEEc--CCcEEEecc-cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc------eEEEEeccCcccEEEEEEcC
Confidence 9999999 555555554 6899999999987 554 88999999999999322 2223333 888999999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG 319 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~ 319 (362)
++. +++++.|+.|++||+.+.+ .+..+.+|...|.+++++++ .+++++.|+.|++|+.. ..+++..+.+|..
T Consensus 195 ~~~-~~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~ 267 (313)
T 3odt_A 195 DGH-FISCSNDGLIKLVDMHTGD----VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKE--NGSLKQVITLPAI 267 (313)
T ss_dssp TTE-EEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTT--TCCEEEEEECSSS
T ss_pred CCe-EEEccCCCeEEEEECCchh----hhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECC--CCceeEEEeccCc
Confidence 998 9999999999999998643 34567789999999999876 89999999999999964 3566888999999
Q ss_pred cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 320 PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.|.+++|+|++ . +++++.||.|++||+...
T Consensus 268 ~i~~~~~~~~~---------~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 268 SIWSVDCMSNG---------D-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CEEEEEECTTS---------C-EEEEETTSCEEEEESCGG
T ss_pred eEEEEEEccCC---------C-EEEEeCCCcEEEEeCCCC
Confidence 99999998753 3 567899999999999643
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=285.33 Aligned_cols=298 Identities=12% Similarity=0.109 Sum_probs=215.6
Q ss_pred ecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCc
Q 044557 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHK 89 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~ 89 (362)
.++.|.++|++++|+ +++|++|+.|++|++||+.+....... .+..|...+.++.+.++ .|++++.|++
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~-------~~~~h~~~v~~~~~s~~~~~l~s~s~d~~ 78 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR-------TFSDHDKIVTCVDWAPKSNRIVTCSQDRN 78 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC-------CBCCCSSCEEEEEECTTTCCEEEEETTSS
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE-------EEecCCceEEEEEEeCCCCEEEEEeCCCe
Confidence 345578899999995 789999999999999998753111111 12235678889988764 5999999999
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIW 169 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iw 169 (362)
|++||+....... ....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 79 v~vwd~~~~~~~~-------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 127 (377)
T 3dwl_C 79 AYVYEKRPDGTWK-------------------------------QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVC 127 (377)
T ss_dssp EEEC------CCC-------------------------------CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEEC
T ss_pred EEEEEcCCCCcee-------------------------------eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEE
Confidence 9999987543000 011223578899999999999999999999999999
Q ss_pred ECCCce---EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC--------------Ccceeehhhhcccc
Q 044557 170 RTSDFK---CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN--------------KKHSLVDVLERHNS 231 (362)
Q Consensus 170 d~~~~~---~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~--------------~~~~~~~~~~~h~~ 231 (362)
|+++.+ +...+...|...|.+++|+|++. +++++.||.|++||+.... ....+...+ .|..
T Consensus 128 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 206 (377)
T 3dwl_C 128 YFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG 206 (377)
T ss_dssp CC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS
T ss_pred EECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc
Confidence 998876 35556544999999999999987 8899999999999986332 112233444 7899
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCcee
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~ 309 (362)
+|.+++|+|++++|++++.|+.|++||+.+.......+..+.+|...|.+++|+++ ++++++.|+.+ +|+.......
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~ 285 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWA 285 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---C
T ss_pred eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceE
Confidence 99999999999999999999999999998776544445677889999999999754 77888766666 6653311100
Q ss_pred ee-------------------------------------e-------------EecCCCCcEEEEEeeecCCccCCCCCc
Q 044557 310 CL-------------------------------------A-------------VLEGHRGPVKCLAAAIDNDRCDSSDTS 339 (362)
Q Consensus 310 ~~-------------------------------------~-------------~l~~h~~~v~~~~~~~~~~~~~~~~~~ 339 (362)
.. . ...+|.+.|+++++.+.... ..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~-----~~ 360 (377)
T 3dwl_C 286 HTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG-----NI 360 (377)
T ss_dssp CSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT-----EE
T ss_pred EEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC-----ce
Confidence 00 0 11239999999997764321 12
Q ss_pred eEEEecCCCCcEEEEec
Q 044557 340 YLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 340 ~~l~s~s~D~~i~~W~~ 356 (362)
..|+|||.||.|++||+
T Consensus 361 ~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 361 TAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEETTSEEEEECC
T ss_pred EEEEeecCCCcEEEecC
Confidence 36899999999999986
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=281.76 Aligned_cols=242 Identities=26% Similarity=0.481 Sum_probs=207.9
Q ss_pred eEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 63 IVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 63 ~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
.+..|...|.++.+.++ .+++++.|++|++||+..+... .++.+
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~----------------------------------~~l~~ 148 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE----------------------------------RTLKG 148 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC----------------------------------EEECC
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE----------------------------------EEEec
Confidence 44567789999999865 5999999999999998764321 12346
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
|.+.|.+++|+|++++|++|+.|++|++||+.+++++..+. +|...|.+++|+|++. +++++.|++|++||+.++..
T Consensus 149 h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~- 226 (410)
T 1vyh_C 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC- 226 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-
Confidence 88999999999999999999999999999999999888775 7999999999999987 88999999999999987753
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-------------
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS------------- 286 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~------------- 286 (362)
...+.+|...|.++.++|++.+|++|+.|++|++||+.+.. ....+.+|...|.+++|++
T Consensus 227 ---~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 227 ---VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp ---EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred ---EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc----eeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence 33456799999999999999999999999999999998644 2345788999999999975
Q ss_pred ---------CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 287 ---------DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 287 ---------~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.++++|+.|++|++||.. ...++..+.+|...|.+++|+|++ .+|+|||.|++|++||+.
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~--~~~~~~~~~~h~~~v~~v~~~~~g---------~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVS--TGMCLMTLVGHDNWVRGVLFHSGG---------KFILSCADDKTLRVWDYK 368 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEECSSS---------SCEEEEETTTEEEEECCT
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECC--CCceEEEEECCCCcEEEEEEcCCC---------CEEEEEeCCCeEEEEECC
Confidence 379999999999999964 456788999999999999998654 468999999999999985
Q ss_pred c
Q 044557 358 F 358 (362)
Q Consensus 358 ~ 358 (362)
.
T Consensus 369 ~ 369 (410)
T 1vyh_C 369 N 369 (410)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=273.26 Aligned_cols=294 Identities=17% Similarity=0.284 Sum_probs=224.4
Q ss_pred cccCccceeeeEec------CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc------eeE
Q 044557 15 LKGHNSYVSSLALA------GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD------KLF 82 (362)
Q Consensus 15 l~gH~~~V~~l~~~------~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------~l~ 82 (362)
+.+|.++|.+++|+ ...+++++.++.|++||+.+.... ..+... ....+...+.++.+.++ .|+
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--RLLQSY--VDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--EEEEEE--ECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--Eeeeec--cccCCCCcEEEEEeccCCCCCCCEEE
Confidence 45999999999997 245777777789999998753211 111100 00013456888888765 699
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVS 161 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s 161 (362)
+++.||.|++||+...+. ...+..|...|.+++|+| ++++|++|+
T Consensus 90 ~~~~dg~i~v~d~~~~~~----------------------------------~~~~~~~~~~i~~~~~~~~~~~~l~s~~ 135 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQC----------------------------------IKHYVGHGNAINELKFHPRDPNLLLSVS 135 (366)
T ss_dssp EEETTCEEEEECTTTCCE----------------------------------EEEEESCCSCEEEEEECSSCTTEEEEEE
T ss_pred EecCCCEEEEEEchhceE----------------------------------eeeecCCCCcEEEEEECCCCCCEEEEEe
Confidence 999999999999875431 112235888999999999 899999999
Q ss_pred CCCcEEEEECCCceEEEeee--ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee---------------
Q 044557 162 WDRTIKIWRTSDFKCLESIT--NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV--------------- 223 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~--~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~--------------- 223 (362)
.|+.|++||+++++.+..+. ..|...|.+++|+|++. +++++.||.|++||+.++.....+.
T Consensus 136 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (366)
T 3k26_A 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 215 (366)
T ss_dssp TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCC
T ss_pred CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccc
Confidence 99999999999998877763 47899999999999986 8899999999999997653211110
Q ss_pred ---------hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC----------cEEEEEeecCccceeEEEEE
Q 044557 224 ---------DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG----------NILVVGALRGHTKSILCMAV 284 (362)
Q Consensus 224 ---------~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~----------~~~~~~~~~~h~~~v~~~~~ 284 (362)
.....|...|.+++|+ +.+|++++.|+.|++||+..... ....+..+.+|...|.++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (366)
T 3k26_A 216 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 293 (366)
T ss_dssp CEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC
T ss_pred ceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE
Confidence 0112288999999998 77999999999999999875432 22456677889988988877
Q ss_pred e----CCeEEEeeCCCcEEEeeCCCCce--eeeeEecCC--CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 285 V----SDLVCSGSADKTIRIWRGIDRNY--TCLAVLEGH--RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 285 ~----~~~~~s~s~D~~i~~W~~~~~~~--~~~~~l~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+ +.++++++.|+.|++|+...... .....+.+| ...|.+++|+|++ .+|++|+.||.|++||+
T Consensus 294 s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 294 SMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS---------SILIAVCDDASIWRWDR 364 (366)
T ss_dssp EECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS---------SEEEEEETTSEEEEEEC
T ss_pred cCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC---------CeEEEEeCCCEEEEEEe
Confidence 5 45899999999999999754221 234577787 7999999998754 46999999999999998
Q ss_pred c
Q 044557 357 S 357 (362)
Q Consensus 357 ~ 357 (362)
.
T Consensus 365 ~ 365 (366)
T 3k26_A 365 L 365 (366)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=270.60 Aligned_cols=241 Identities=21% Similarity=0.283 Sum_probs=199.8
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~ 86 (362)
+..+|+||...|.++.+. +.+++||+.|++|++||+.+... .. .+..+...+.++.+.++ .|++++.
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~--~~-------~~~~~~~~~~~~~~spdg~~l~~g~~ 142 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ--IK-------SIDAGPVDAWTLAFSPDSQYLATGTH 142 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--EE-------EEECCTTCCCCEEECTTSSEEEEECT
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE--EE-------EEeCCCccEEEEEECCCCCEEEEEcC
Confidence 455789999999999995 67999999999999999875421 11 11223445666777654 5999999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
|+.|++|+++.+.. ...+..|...+.+++|+|++++|++|+.|+.|
T Consensus 143 dg~v~i~~~~~~~~----------------------------------~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i 188 (321)
T 3ow8_A 143 VGKVNIFGVESGKK----------------------------------EYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188 (321)
T ss_dssp TSEEEEEETTTCSE----------------------------------EEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCcEEEEEcCCCce----------------------------------eEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence 99999999875431 01123466789999999999999999999999
Q ss_pred EEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 167 KIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
++||+++++++..+. +|..+|.+++|+|++. +++++.||+|++||+.++. ....+.+|...|.+++|+|++.+|
T Consensus 189 ~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~~~l 263 (321)
T 3ow8_A 189 NIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN----LAGTLSGHASWVLNVAFCPDDTHF 263 (321)
T ss_dssp EEEETTTTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEECCCCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc----eeEEEcCCCCceEEEEECCCCCEE
Confidence 999999999888775 7999999999999997 8899999999999998764 334566899999999999999999
Q ss_pred EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 246 YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
++++.|++|++||+.+.. .+..+.+|...|.+++|+++ +|++++.|++|++|++
T Consensus 264 ~s~s~D~~v~iwd~~~~~----~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 264 VSSSSDKSVKVWDVGTRT----CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEeCCCcEEEEeCCCCE----EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999997543 45567889999999999865 8999999999999984
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=270.42 Aligned_cols=251 Identities=24% Similarity=0.420 Sum_probs=195.3
Q ss_pred EEeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC
Q 044557 64 VAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD 143 (362)
Q Consensus 64 ~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 143 (362)
+..|.+.|.++.+.++.|++++.|++|++|++...... ....+ ....|.+
T Consensus 10 ~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~-----~~~~~-------------------------~~~~h~~ 59 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFT-----LIDVL-------------------------DETAHKK 59 (330)
T ss_dssp EECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCE-----EEEEE-------------------------CTTCCCS
T ss_pred eccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeE-----EEEEE-------------------------ecCCccC
Confidence 34567889999999999999999999999998643210 00000 0013888
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCC-------ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCC
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSD-------FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-------~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~ 215 (362)
.|.+++|+|++++|++|+.|++|+|||++. .+++..+ .+|...|.+++|+|++. |++++.|++|++||+..
T Consensus 60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 999999999999999999999999999853 2344444 47999999999999997 88999999999999954
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC----eEEE
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD----LVCS 291 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~s 291 (362)
..........+.+|..+|.+++|+|++.+|++|+.|++|++||.... ....+..+.+|...|.+++|+++ ++++
T Consensus 139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 216 (330)
T 2hes_X 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD--DWECVAVLNGHEGTVWSSDFDKTEGVFRLCS 216 (330)
T ss_dssp TCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred CCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC--CeeEEEEccCCCCcEEEEEecCCCCeeEEEE
Confidence 33333445566789999999999999999999999999999998753 22345678899999999999864 6999
Q ss_pred eeCCCcEEEeeCCCC------ceeeeeEecC-CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 292 GSADKTIRIWRGIDR------NYTCLAVLEG-HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~------~~~~~~~l~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++.|++|++|+.... ...+...+.+ |...|.+++|+++ .+|++|+.||+|++||..
T Consensus 217 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----------~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN----------GLIASVGADGVLAVYEEV 279 (330)
T ss_dssp EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT----------SCEEEEETTSCEEEEEEE
T ss_pred EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC----------CEEEEEeCCCEEEEEEcC
Confidence 999999999985321 1245556665 9999999999743 258999999999999974
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=262.67 Aligned_cols=284 Identities=19% Similarity=0.350 Sum_probs=225.1
Q ss_pred cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcE
Q 044557 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKI 90 (362)
Q Consensus 15 l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i 90 (362)
..+|...|.+++|+ +++|++++ ||.|++||+............. ...+...+.++.+.++ .+++++.|+.|
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 121 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD----CLNRDNYIRSCKLLPDGCTLIVGGEASTL 121 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE----CSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc----ccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 45899999999995 77999998 9999999987643211111000 0024567888888754 59999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
++|++...... ....+..|...+.+++|+|++++|++++.|+.|++||
T Consensus 122 ~~~d~~~~~~~--------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d 169 (337)
T 1gxr_A 122 SIWDLAAPTPR--------------------------------IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169 (337)
T ss_dssp EEEECCCC--E--------------------------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEECCCCCcc--------------------------------eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 99998754310 0112235778899999999999999999999999999
Q ss_pred CCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc
Q 044557 171 TSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 171 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
+++++.+..+. .|...+.+++|+|++. +++++.||.|++||+.++..... ..+..++.+++|+|++.+|++++
T Consensus 170 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 170 LHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-----HDFTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp TTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-----EECSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-----ecCCCceEEEEECCCCCEEEEEc
Confidence 99998887775 6889999999999986 88999999999999987643222 24678899999999999999999
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
.|+.|++||+...+ . ..+..|...|.+++++++ ++++++.|+.|++|+..... .+ ....|...|.+++|+
T Consensus 244 ~~~~i~~~~~~~~~--~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~--~~-~~~~~~~~v~~~~~s 315 (337)
T 1gxr_A 244 ESSNVEVLHVNKPD--K---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--SI-FQSKESSSVLSCDIS 315 (337)
T ss_dssp TTSCEEEEETTSSC--E---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EE-EEEECSSCEEEEEEC
T ss_pred CCCcEEEEECCCCC--e---EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe--EE-EEecCCCcEEEEEEC
Confidence 99999999998643 1 246789999999999854 89999999999999965432 23 234689999999998
Q ss_pred ecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|++ .+|++++.||.|++|++.+
T Consensus 316 ~~~---------~~l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 316 VDD---------KYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp TTS---------CEEEEEETTSCEEEEEEEC
T ss_pred CCC---------CEEEEecCCCeEEEEEEeC
Confidence 764 4689999999999999853
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=281.76 Aligned_cols=307 Identities=13% Similarity=0.254 Sum_probs=223.5
Q ss_pred eccceeeec-ccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ce
Q 044557 7 VDHHCLTTL-KGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DK 80 (362)
Q Consensus 7 ~~~~~~~tl-~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~ 80 (362)
+..+++.+| ++|.+.|++++|+ +++|+||+.||+|++||+........ + .......|...|.++.+.+ +.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~--~--~~~~~~~h~~~v~~~~~~~~~~~ 125 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV--Y--SSSLTYDCSSTVTQITMIPNFDA 125 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC--C--SCSEEEECSSCEEEEEECTTSSE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc--c--ceeeeccCCCCEEEEEEeCCCCE
Confidence 456788888 9999999999995 46999999999999999765111000 0 0011113577899999876 45
Q ss_pred eEEEecCCcEEEEecCC---CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee--ecCceeEEE--EecC
Q 044557 81 LFSAHQDHKIRVWKINN---QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH--HVDAVSALA--LTKD 153 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~--~~~~ 153 (362)
|++++.||+|++||+.. +... ....... + ....+.. +...+.++. ++++
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~-------------------i---~~~~~~~~~~~~~~~~~~~~~~~~ 181 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEV--KFLNCEC-------------------I---RKINLKNFGKNEYAVRMRAFVNEE 181 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEE--EEEEEEE-------------------E---EEEEGGGGSSCCCEEEEEEEECSS
T ss_pred EEEEeCCCEEEEEEeccccCCcee--eccccce-------------------e---EEEEccCcccccCceEEEEEEcCC
Confidence 99999999999999852 1100 0000000 0 0000001 445677777 5689
Q ss_pred CCEEEEEECCCcEEEEECCCceEEEeeecc-CcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhh-ccc
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCLESITNA-HDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLE-RHN 230 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~h~ 230 (362)
+++|++|+.|+.|++||+++++++..+... |...|.+++|+|++. +++++.||.|++||+.++... ..+. .|.
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~ 257 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI----RSWSFGDH 257 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE----EEEBCTTC
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE----EEEecCCC
Confidence 999999999999999999999988887633 889999999999987 889999999999999875432 2222 577
Q ss_pred cceeEEEEe----cCCCEEEEEcCCCcEEEEeccCCCCcEEEEE---------------------eecC--ccceeEEEE
Q 044557 231 SGINALALS----CDGSVLYSGACDRSIIVWEKEEDDGNILVVG---------------------ALRG--HTKSILCMA 283 (362)
Q Consensus 231 ~~v~~i~~s----~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---------------------~~~~--h~~~v~~~~ 283 (362)
.+|.+++|+ |++.+|++|+.|+.|++||+.+..... .+. .+.+ |...|.+++
T Consensus 258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQY-AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS 336 (437)
T ss_dssp EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEE-EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEE-EEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence 899999665 468899999999999999997643211 111 1122 677789999
Q ss_pred EeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecC-------------------------------------CCCcEEEEE
Q 044557 284 VVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEG-------------------------------------HRGPVKCLA 325 (362)
Q Consensus 284 ~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~-------------------------------------h~~~v~~~~ 325 (362)
++++ ++++++.|+.|++|+... .+++..+.+ |.+.|++++
T Consensus 337 ~~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~ 414 (437)
T 3gre_A 337 VSNDKILLTDEATSSIVMFSLNE--LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSIS 414 (437)
T ss_dssp EETTEEEEEEGGGTEEEEEETTC--GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEE
T ss_pred ECCceEEEecCCCCeEEEEECCC--cccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEe
Confidence 9854 899999999999999643 233333433 899999999
Q ss_pred eeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 326 AAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
++++. ...+|+||+.||.|+||+
T Consensus 415 ~~~~~-------~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 415 TCEVD-------ETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEESS-------SSEEEEEEETTSCEEEEC
T ss_pred eeccC-------CceEEEEEcCCceEEEeC
Confidence 98762 236899999999999995
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-36 Score=277.34 Aligned_cols=280 Identities=29% Similarity=0.494 Sum_probs=230.2
Q ss_pred cceeeecccCccce-eeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecC
Q 044557 9 HHCLTTLKGHNSYV-SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQD 87 (362)
Q Consensus 9 ~~~~~tl~gH~~~V-~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~d 87 (362)
.+....|+||.+.| .++.+++++|++|+.||+|++||+.+... ... +..|.+.+.++.+.++.+++++.|
T Consensus 108 ~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~--~~~-------~~~h~~~v~~~~~~~~~l~s~~~d 178 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKC--LRT-------LVGHTGGVWSSQMRDNIIISGSTD 178 (445)
T ss_dssp CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCE--EEE-------CCCCSSCEEEEEEETTEEEEEETT
T ss_pred cceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcE--EEE-------EcCCCCCEEEEEecCCEEEEEeCC
Confidence 34567899999874 78888999999999999999999875431 111 223567888898888899999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
|+|++||+..++. ...+..|...|.++.++ ++.+++|+.|+.|+
T Consensus 179 g~i~vwd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~ 222 (445)
T 2ovr_B 179 RTLKVWNAETGEC----------------------------------IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLR 222 (445)
T ss_dssp SCEEEEETTTTEE----------------------------------EEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred CeEEEEECCcCcE----------------------------------EEEECCCCCcEEEEEec--CCEEEEEeCCCEEE
Confidence 9999999865421 11223578889999986 56899999999999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 247 (362)
+||+++++++..+. .|...|.++++ .+..+++++.||.|++||+.++. ....+..|..+|.++.| ++.++++
T Consensus 223 ~wd~~~~~~~~~~~-~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~ 294 (445)
T 2ovr_B 223 VWDIETGQCLHVLM-GHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETET----CLHTLQGHTNRVYSLQF--DGIHVVS 294 (445)
T ss_dssp EEESSSCCEEEEEE-CCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTE----EEEEECCCSSCEEEEEE--CSSEEEE
T ss_pred EEECCCCcEEEEEc-CCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCc----EeEEecCCCCceEEEEE--CCCEEEE
Confidence 99999998888775 79999999999 33459999999999999987754 33445678999999998 8899999
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecC---CCCcEEEE
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEG---HRGPVKCL 324 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~---h~~~v~~~ 324 (362)
++.|+.|++||+.+.+ .+..+.+|...+.++.+.++++++++.|+.|++|+.. ...++..+.+ |...|.++
T Consensus 295 ~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~v~~~ 368 (445)
T 2ovr_B 295 GSLDTSIRVWDVETGN----CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK--TGQCLQTLQGPNKHQSAVTCL 368 (445)
T ss_dssp EETTSCEEEEETTTCC----EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETT--TCCEEEEECSTTSCSSCEEEE
T ss_pred EeCCCeEEEEECCCCC----EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECC--CCcEEEEEccCCCCCCCEEEE
Confidence 9999999999998644 3456788999999999999999999999999999964 3456777776 89999999
Q ss_pred EeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 325 AAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+|++ .+|++|+.||.|++||+..
T Consensus 369 ~~~~-----------~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 369 QFNK-----------NFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EECS-----------SEEEEEETTSEEEEEETTT
T ss_pred EECC-----------CEEEEEeCCCeEEEEECCC
Confidence 9842 3699999999999999864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=271.76 Aligned_cols=294 Identities=14% Similarity=0.188 Sum_probs=223.1
Q ss_pred ceeeecccCccceeeeEec--C-cEEEEecC---CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc----
Q 044557 10 HCLTTLKGHNSYVSSLALA--G-KFLYTGSS---DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD---- 79 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~-~~l~t~s~---Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---- 79 (362)
...+.+++|.+.|.+++|+ + .++++|+. |++|++||+.+...... ....+...+.++.+.++
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~ 80 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--------REIEKAKPIKCGTFGATSLQQ 80 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--------EEEEESSCEEEEECTTCCTTT
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--------eeecccCcEEEEEEcCCCCCC
Confidence 3445678999999999995 4 46677776 99999999875431111 11235678889988764
Q ss_pred -eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEE------Eec
Q 044557 80 -KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALA------LTK 152 (362)
Q Consensus 80 -~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~ 152 (362)
.+++++.|+.|++|++...... ...+..|...|.++. |+|
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~---------------------------------~~~~~~~~~~v~~~~~~~~~~~s~ 127 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMP---------------------------------VYSVKGHKEIINAIDGIGGLGIGE 127 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSC---------------------------------SEEECCCSSCEEEEEEESGGGCC-
T ss_pred ceEEEecCCCeEEEEeCCCCCcc---------------------------------EEEEEecccceEEEeeccccccCC
Confidence 4999999999999998754310 012235788889985 468
Q ss_pred CCCEEEEEECCCcEEEEECCCce-EEEeeeccCc----ccEEEEE----EcCCCc-EEEEeCCCeEEEEeCCCCCCccee
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFK-CLESITNAHD----DAINAVA----LSDDGD-VYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~h~----~~v~~v~----~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
++++|++++.|+.|++||+++++ .+..+. .|. ..+.+++ |+|++. +++++.||.|++||+.++...
T Consensus 128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--- 203 (357)
T 3i2n_A 128 GAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR--- 203 (357)
T ss_dssp CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE---
T ss_pred CccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee---
Confidence 99999999999999999999876 455443 333 3788888 677886 788999999999999876421
Q ss_pred ehhhhccccceeEEEEec---CCCEEEEEcCCCcEEEEeccCCCCcE-EEEEeecCccceeEEEEEeCC---eEEEeeCC
Q 044557 223 VDVLERHNSGINALALSC---DGSVLYSGACDRSIIVWEKEEDDGNI-LVVGALRGHTKSILCMAVVSD---LVCSGSAD 295 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~---~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D 295 (362)
....|..+|.+++|+| ++.+|++++.|+.|++||+....... .....+.+|...|.+++++++ ++++++.|
T Consensus 204 --~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 281 (357)
T 3i2n_A 204 --WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA 281 (357)
T ss_dssp --EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred --eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC
Confidence 2245788999999999 99999999999999999987543221 112245589999999999875 79999999
Q ss_pred CcEEEeeCCCC-----------------ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEE-ecCCCCcEEEEecc
Q 044557 296 KTIRIWRGIDR-----------------NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC-SGSLDCDIKVWQIS 357 (362)
Q Consensus 296 ~~i~~W~~~~~-----------------~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~s~D~~i~~W~~~ 357 (362)
+.|++|+.... ...++..+.+|...|.+++|+|++. +|+ ||+.|+.|++||+.
T Consensus 282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR---------GLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST---------TEEEEEETTSEEEEEEEC
T ss_pred CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC---------eEEEEecCCCcEEEEECC
Confidence 99999996421 2256788999999999999987654 355 89999999999997
Q ss_pred cC
Q 044557 358 FP 359 (362)
Q Consensus 358 ~~ 359 (362)
..
T Consensus 353 ~~ 354 (357)
T 3i2n_A 353 KL 354 (357)
T ss_dssp C-
T ss_pred Cc
Confidence 54
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=273.55 Aligned_cols=251 Identities=24% Similarity=0.321 Sum_probs=193.7
Q ss_pred ecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEE
Q 044557 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIR 91 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~ 91 (362)
++.+|.+.|++++|+ +++||||+.|++||+||+.+... ..
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------~~ 49 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------IL 49 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE--------------------------------------EE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc--------------------------------------EE
Confidence 467999999999994 88999999999999999642100 00
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--CCCEEEEEECCCcEEEE
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK--DETLLYSVSWDRTIKIW 169 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iw 169 (362)
+ ..+.+|.+.|.+++|+| ++++|++|+.|++|++|
T Consensus 50 ~-------------------------------------------~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 50 I-------------------------------------------ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp E-------------------------------------------EEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred E-------------------------------------------EEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 0 01235888999999975 48999999999999999
Q ss_pred ECCCce--EEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC---
Q 044557 170 RTSDFK--CLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD--- 241 (362)
Q Consensus 170 d~~~~~--~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--- 241 (362)
|+++++ ....+ .+|...|.+++|+|+ +. +++++.||+|++||+..... ......+..|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 87 REENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-WEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-EEECCBTTSSSSCBCCCEECCCCCC
T ss_pred ECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-cceeeeeccccCCcceEEEccccCC
Confidence 998763 44444 479999999999997 54 88999999999999876431 1223455679999999999997
Q ss_pred --------------CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC------CeEEEeeCCCcEEEe
Q 044557 242 --------------GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS------DLVCSGSADKTIRIW 301 (362)
Q Consensus 242 --------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~s~s~D~~i~~W 301 (362)
+++|++|+.|++|++||++.. ........+.+|...|.+++|++ .+|+++|.|++|++|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCC-CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 478999999999999998643 22334567889999999999976 369999999999999
Q ss_pred eCCCCc--eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 302 RGIDRN--YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 302 ~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+..... ......+.+|...|++++|+|++ .+|++|+.|++|+||+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---------~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITA---------NILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECTTT---------CCEEEEESSSCEEEEEEC
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcCCC---------CEEEEEcCCCeEEEEEEC
Confidence 864311 11234567899999999998764 469999999999999975
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=277.60 Aligned_cols=281 Identities=27% Similarity=0.472 Sum_probs=223.2
Q ss_pred eeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEE
Q 044557 12 LTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIR 91 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~ 91 (362)
+....+|...|.++.++++++++|+.||+|++||+.+... . ..+..|.+.+.++.+.++.+++++.||+|+
T Consensus 126 ~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~--~-------~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~ 196 (435)
T 1p22_A 126 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC--K-------RILTGHTGSVLCLQYDERVIITGSSDSTVR 196 (435)
T ss_dssp EECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE--E-------EEECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred EecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE--E-------EEEcCCCCcEEEEEECCCEEEEEcCCCeEE
Confidence 3445678889999999999999999999999999875431 1 122345678889988888899999999999
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
+||+..+.. ...+..|...|.+++|++ .+|++|+.|+.|++||+
T Consensus 197 vwd~~~~~~----------------------------------~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 240 (435)
T 1p22_A 197 VWDVNTGEM----------------------------------LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDM 240 (435)
T ss_dssp EEESSSCCE----------------------------------EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEEC
T ss_pred EEECCCCcE----------------------------------EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeC
Confidence 999875431 112235788899999974 59999999999999999
Q ss_pred CCceEEE--eeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc
Q 044557 172 SDFKCLE--SITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 172 ~~~~~~~--~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
++++... ....+|...|.++++ .+..+++++.||.|++||+.++.. ...+..|..+|.++.+ ++.++++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~g~ 313 (435)
T 1p22_A 241 ASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEF----VRTLNGHKRGIACLQY--RDRLVVSGS 313 (435)
T ss_dssp SSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEE--ETTEEEEEE
T ss_pred CCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcE----EEEEcCCCCcEEEEEe--CCCEEEEEe
Confidence 8876442 334579999999999 334589999999999999987653 3345678999999988 578999999
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCc-------eeeeeEecCCCCcEE
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRN-------YTCLAVLEGHRGPVK 322 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~-------~~~~~~l~~h~~~v~ 322 (362)
.||.|++||+.++. .+..+.+|...|.++++.+.++++|+.||.|++|+..... ..++..+.+|.+.|.
T Consensus 314 ~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~ 389 (435)
T 1p22_A 314 SDNTIRLWDIECGA----CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 389 (435)
T ss_dssp TTSCEEEEETTTCC----EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC
T ss_pred CCCeEEEEECCCCC----EEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeE
Confidence 99999999998643 3456788999999999988899999999999999953211 116788999999999
Q ss_pred EEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+++| ++ .+|++|+.||+|++||+..+
T Consensus 390 ~l~~--~~---------~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 390 RLQF--DE---------FQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp CEEE--CS---------SCEEECCSSSEEEEEC----
T ss_pred EEEe--CC---------CEEEEEeCCCEEEEEECCCC
Confidence 9998 22 35899999999999999644
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-36 Score=267.32 Aligned_cols=249 Identities=24% Similarity=0.439 Sum_probs=201.5
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC-ceeEEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-DKLFSA 84 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~s~ 84 (362)
+.+++.++.+|...|.+++|+ +++|++|+.|++|++|++.+....... ...+..|.+.+.++.+.+ +.++++
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~l~s~ 160 (340)
T 1got_B 86 TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV-----SRELAGHTGYLSCCRFLDDNQIVTS 160 (340)
T ss_dssp TCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE-----EEEEECCSSCEEEEEEEETTEEEEE
T ss_pred CCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee-----EEEecCCCccEEEEEECCCCcEEEE
Confidence 355777889999999999994 789999999999999998764321110 112234566777777654 469999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|++|++||++.+.. ...+.+|.+.|.+++|+|++++|++|+.|+
T Consensus 161 s~d~~i~~wd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~ 206 (340)
T 1got_B 161 SGDTTCALWDIETGQQ----------------------------------TTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206 (340)
T ss_dssp ETTSCEEEEETTTTEE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCcEEEEECCCCcE----------------------------------EEEEcCCCCceEEEEECCCCCEEEEEeCCC
Confidence 9999999999865321 112346888999999999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
.|++||+++++++..+. +|...|.+++|+|++. +++++.||+|++||+.++.....+ ....+..+|++++|+|+|+
T Consensus 207 ~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 207 SAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY--SHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp CEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCTTCCSCEEEEEECTTSS
T ss_pred cEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE--ccCCcccceEEEEECCCCC
Confidence 99999999998888775 7999999999999987 889999999999999875432221 1123445799999999999
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
+|++|+.|+.|++||..... ....+.+|...|.+++|+++ +++|||.|++|++|+
T Consensus 284 ~l~~g~~d~~i~vwd~~~~~----~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 284 LLLAGYDDFNCNVWDALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCeEEEEEcccCc----EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999987643 34567899999999999865 899999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=267.98 Aligned_cols=242 Identities=16% Similarity=0.154 Sum_probs=190.9
Q ss_pred ccCccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEE
Q 044557 16 KGHNSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRV 92 (362)
Q Consensus 16 ~gH~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~ 92 (362)
..|.+.|.+++|+ .+.|++|+.||+|||||+++........ .....|...|.++.+.++ .|++++.|++|++
T Consensus 79 ~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~-----~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 79 VQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSK-----FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp EEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEE-----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEee-----ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3467789999996 4689999999999999987644221111 122346778999998765 5999999999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCcEEEEEC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~ 171 (362)
||++.+.. ..++.+|.+.|.+++|+|++ .+|++|+.|++|++||+
T Consensus 154 wd~~~~~~----------------------------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 154 WDLAQQVV----------------------------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp EETTTTEE----------------------------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EECCCCcE----------------------------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence 99875421 12334689999999999988 48899999999999999
Q ss_pred CCceEEEeee-ccCcccEEEEEEcCCC-c-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-CEEEE
Q 044557 172 SDFKCLESIT-NAHDDAINAVALSDDG-D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG-SVLYS 247 (362)
Q Consensus 172 ~~~~~~~~~~-~~h~~~v~~v~~~~~~-~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s 247 (362)
+++++...+. ..|...+.+++|+|++ . +++|+.||+|++||+.+++.. ..+.+|...|++++|+|++ ++|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~~~~h~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LSSAVHSQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EEEECCSSCEEEEEECSSSSCCEEE
T ss_pred cccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EEEcCCCCCEEEEEEccCCCeEEEE
Confidence 9988777654 2455678999999865 4 678999999999999877543 3456799999999999998 57999
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCC
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~ 305 (362)
|+.|++|++||+..++ +..+.+|.+.|.+++|+++ +++|+|.|++|++|++..
T Consensus 276 gs~D~~i~vwd~~~~~-----~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 276 LSEDCSLAVLDSSLSE-----LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EETTSCEEEECTTCCE-----EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred EeCCCeEEEEECCCCc-----EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999999999987532 2346899999999999853 688999999999999643
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=273.17 Aligned_cols=284 Identities=24% Similarity=0.454 Sum_probs=232.0
Q ss_pred ccceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecC
Q 044557 8 DHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQD 87 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~d 87 (362)
..+++.++.+|.+.|.++.++++++++|+.||+|++||+.+... .. .+..|...+.++.+.++.+++++.|
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~-------~~~~h~~~v~~~~~~~~~l~s~s~d 218 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGEC--IH-------TLYGHTSTVRCMHLHEKRVVSGSRD 218 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE--EE-------EECCCSSCEEEEEEETTEEEEEETT
T ss_pred CCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcE--EE-------EECCCCCcEEEEEecCCEEEEEeCC
Confidence 45688899999999999999999999999999999999876421 11 1223566788888888899999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
|+|++||+..+.. ...+..|...|.++++ +++++++|+.|+.|+
T Consensus 219 g~i~~wd~~~~~~----------------------------------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 219 ATLRVWDIETGQC----------------------------------LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK 262 (445)
T ss_dssp SEEEEEESSSCCE----------------------------------EEEEECCSSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred CEEEEEECCCCcE----------------------------------EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEE
Confidence 9999999875431 1122357888999988 688999999999999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 247 (362)
+||+++++++..+. .|...|.+++| .+..+++++.||.|++||+.++.. ...+..|...+.++.+ ++.+|++
T Consensus 263 iwd~~~~~~~~~~~-~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~ 334 (445)
T 2ovr_B 263 VWDPETETCLHTLQ-GHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNC----IHTLTGHQSLTSGMEL--KDNILVS 334 (445)
T ss_dssp EEEGGGTEEEEEEC-CCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCE----EEEECCCCSCEEEEEE--ETTEEEE
T ss_pred EEECCCCcEeEEec-CCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCE----EEEEcCCcccEEEEEE--eCCEEEE
Confidence 99999999888775 78999999999 334589999999999999987653 3344578888887776 5679999
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeecC---ccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEe-----cCCCC
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALRG---HTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVL-----EGHRG 319 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l-----~~h~~ 319 (362)
|+.||.|++||+.+++ .+..+.+ |...|.+++++++++++++.||.|++|+... .+.+..+ .+|..
T Consensus 335 ~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 335 GNADSTVKIWDIKTGQ----CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT--GEFIRNLVTLESGGSGG 408 (445)
T ss_dssp EETTSCEEEEETTTCC----EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT--CCEEEEEEECTTGGGTC
T ss_pred EeCCCeEEEEECCCCc----EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC--CceeeeeeccccCCCCc
Confidence 9999999999997643 2334444 8889999999999999999999999999643 4456666 58899
Q ss_pred cEEEEEeeecCCccCCCCCceEEEecCCCCc----EEEEecccC
Q 044557 320 PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD----IKVWQISFP 359 (362)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~----i~~W~~~~~ 359 (362)
.|++++|+|+ +.+|++|+.||+ |.+||+...
T Consensus 409 ~v~~~~~s~~---------~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 409 VVWRIRASNT---------KLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEEECSS---------EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eEEEEEecCC---------EEEEEEcccCCCCccEEEEEECCCC
Confidence 9999999765 467999999998 999999754
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=274.66 Aligned_cols=282 Identities=23% Similarity=0.372 Sum_probs=223.0
Q ss_pred eeeecccCccce-eeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCC
Q 044557 11 CLTTLKGHNSYV-SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDH 88 (362)
Q Consensus 11 ~~~tl~gH~~~V-~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg 88 (362)
+..+|++|.+.| .++.+++++|+||+.||+|++||+.+.. ... .+..|.+.|.++.+.++ .+++++.||
T Consensus 113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~--~~~-------~~~~h~~~V~~l~~~~~~~l~s~s~dg 183 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKK--FLL-------QLSGHDGGVWALKYAHGGILVSGSTDR 183 (464)
T ss_dssp EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTE--EEE-------EECCCSSCEEEEEECSTTEEEEEETTS
T ss_pred ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCc--EEE-------EEeCCCcCEEEEEEcCCCEEEEEeCCC
Confidence 456899999885 7888899999999999999999986532 111 12346778999988765 699999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe--cCCCEEEEEECCCcE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT--KDETLLYSVSWDRTI 166 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~d~~i 166 (362)
+|++||++.+.. ...+.+|.+.|.+++++ +++++|++|+.|+.|
T Consensus 184 ~i~vwd~~~~~~----------------------------------~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 184 TVRVWDIKKGCC----------------------------------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp CEEEEETTTTEE----------------------------------EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred CEEEEECCCCcE----------------------------------EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 999999875421 11233588899999998 577899999999999
Q ss_pred EEEECCCceEE----------------------EeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 167 KIWRTSDFKCL----------------------ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 167 ~iwd~~~~~~~----------------------~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
++||+++.... .....+|...+.++ ++++. +++++.||.|++||+.++. ..
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~----~~ 303 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK----CL 303 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE----EE
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc----EE
Confidence 99999876532 12234688888777 45554 8899999999999998754 33
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeC
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~ 303 (362)
..+..|..+|.+++|+|++.+|++|+.|+.|++||+.+++ .+..+.+|...|.++.+++.++++++.|+.|++|+.
T Consensus 304 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~ 379 (464)
T 3v7d_B 304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDA 379 (464)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEEC
Confidence 4456799999999999999999999999999999997643 455678999999999999999999999999999997
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
... .....+ .|...+..++|++++ .+|++|+ |+.|++||+..
T Consensus 380 ~~~--~~~~~~-~~~~~~~~~~~~~~~---------~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 380 NDY--SRKFSY-HHTNLSAITTFYVSD---------NILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp TTC--CEEEEE-ECTTCCCEEEEEECS---------SEEEEEE-TTEEEEEETTT
T ss_pred CCC--ceeeee-cCCCCccEEEEEeCC---------CEEEEec-CCeEEEEECCC
Confidence 542 222223 366677778888764 4688887 89999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=265.41 Aligned_cols=247 Identities=24% Similarity=0.381 Sum_probs=198.6
Q ss_pred ecc-eeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC
Q 044557 67 GKG-AVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD 143 (362)
Q Consensus 67 ~~~-~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 143 (362)
|.. .+.++.+.++ .|++++.|++|++|++...... . ......+|..
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~-----~--------------------------~~~~~~~h~~ 62 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI-----C--------------------------KSVLSEGHQR 62 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE-----E--------------------------EEEECSSCSS
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce-----e--------------------------eeeeccccCC
Confidence 444 6778888765 5999999999999998643200 0 0001135889
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCce--EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFK--CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
.|.+++|+|++++|++|+.|+.|++|++.... ++..+ .+|...|.+++|+|++. +++++.|++|++||+..+.. .
T Consensus 63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-~ 140 (345)
T 3fm0_A 63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-Y 140 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-E
T ss_pred cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-e
Confidence 99999999999999999999999999987653 45555 47999999999999997 88999999999999976542 2
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i 298 (362)
.....+..|...|.+++|+|++.+|++|+.|++|++||.... .......+.+|...|.+++|+++ +|++++.|++|
T Consensus 141 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~--~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v 218 (345)
T 3fm0_A 141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED--DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218 (345)
T ss_dssp EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC--CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeE
Confidence 334556789999999999999999999999999999998753 23345678899999999999865 89999999999
Q ss_pred EEeeCCC-------------CceeeeeEecC-CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 299 RIWRGID-------------RNYTCLAVLEG-HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 299 ~~W~~~~-------------~~~~~~~~l~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++|+... ....++..+.+ |...|.+++|+|++ .+|++++.|+.|++|+..
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---------~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT---------GALATACGDDAIRVFQED 282 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT---------CCEEEEETTSCEEEEEEC
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC---------CEEEEEeCCCeEEEEEeC
Confidence 9998421 22355667776 99999999998764 358999999999999975
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=281.77 Aligned_cols=291 Identities=16% Similarity=0.166 Sum_probs=209.9
Q ss_pred cceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeE
Q 044557 9 HHCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLF 82 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~ 82 (362)
.+...+..+|...|++|+|+ +++||+|+.||+|+|||+.+........ ...|.+.|.++.+.+ +.|+
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-------~~gH~~~V~~l~f~p~~~~~l~ 181 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-------GIGAGGSITGLKFNPLNTNQFY 181 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-------CCSSSCCCCEEEECSSCTTEEE
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-------ccCCCCCEEEEEEeCCCCCEEE
Confidence 34556678899999999995 4689999999999999987543211111 123567899999864 4699
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.||+|++||++.... ..... ...+...+.+++|+|++++|++|+.
T Consensus 182 s~s~D~~v~iwd~~~~~~--------~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~~g~~ 229 (435)
T 4e54_B 182 ASSMEGTTRLQDFKGNIL--------RVFAS------------------------SDTINIWFCSLDVSASSRMVVTGDN 229 (435)
T ss_dssp EECSSSCEEEEETTSCEE--------EEEEC------------------------CSSCSCCCCCEEEETTTTEEEEECS
T ss_pred EEeCCCEEEEeeccCCce--------eEEec------------------------cCCCCccEEEEEECCCCCEEEEEeC
Confidence 999999999999864210 00000 0012345788999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
||.|++||++.. .+..+ ..|...|.+++|+|++. +++++.|+.|++||+.+......+ .....|..+|++++|+|
T Consensus 230 dg~i~~wd~~~~-~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~sp 306 (435)
T 4e54_B 230 VGNVILLNMDGK-ELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-LYSLPHRHPVNAACFSP 306 (435)
T ss_dssp SSBEEEEESSSC-BCCCS-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-SBCCBCSSCEEECCBCT
T ss_pred CCcEeeeccCcc-eeEEE-ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-EEeeeccccccceeECC
Confidence 999999998754 44444 37999999999999875 678999999999999876544332 23356899999999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce------eEEEEEeC--CeEE------------EeeCCCcEEE
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS------ILCMAVVS--DLVC------------SGSADKTIRI 300 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~------v~~~~~~~--~~~~------------s~s~D~~i~~ 300 (362)
+|.+|++++.|+.|++||+.+.+.... +..|... +....+.+ .+++ ++..++.|++
T Consensus 307 dg~~l~s~~~D~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~i 382 (435)
T 4e54_B 307 DGARLLTTDQKSEIRVYSASQWDCPLG----LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDV 382 (435)
T ss_dssp TSSEEEEEESSSCEEEEESSSSSSEEE----ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEE
T ss_pred CCCeeEEEcCCCEEEEEECCCCccceE----EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEE
Confidence 999999999999999999987543222 2222211 11122222 2233 3335578999
Q ss_pred eeCCCCceeeeeEe-cCCCCcEEEE-EeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 301 WRGIDRNYTCLAVL-EGHRGPVKCL-AAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 301 W~~~~~~~~~~~~l-~~h~~~v~~~-~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|+... +.++..+ .+|...|.++ +|+|++ .+|++|+ |++|+||++.
T Consensus 383 wd~~~--g~~~~~l~~~~~~~v~s~~~fspdg---------~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 383 FDGNS--GKMMCQLYDPESSGISSLNEFNPMG---------DTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp ECSSS--CCEEEEECCSSCCCCCCEEEECTTS---------SCEEEEC-SSEEEECCCC
T ss_pred EECCC--CcEEEEEeCCCCCcEEEEEEECCCC---------CEEEEEc-CCcEEEEECC
Confidence 99643 4556655 4788899887 587654 4688886 7899999985
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=264.09 Aligned_cols=285 Identities=16% Similarity=0.229 Sum_probs=225.7
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
....+|.+|.+.|++++|+ +++|++|+.||.|++||+.+... .. .+..|...+.++.+.++ .|++++
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~-------~~~~h~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER--LG-------TLDGHTGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE--EE-------EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh--hh-------hhhhcCCcEEEEEEcCCCCEEEEEe
Confidence 3556799999999999994 78999999999999999875321 11 12235678888888754 699999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC--
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD-- 163 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-- 163 (362)
.|++|++||+..+... ....|...+.+++|+|++++|++++.+
T Consensus 94 ~dg~i~iwd~~~~~~~-----------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 138 (369)
T 3zwl_B 94 ADYSIKLWDVSNGQCV-----------------------------------ATWKSPVPVKRVEFSPCGNYFLAILDNVM 138 (369)
T ss_dssp TTTEEEEEETTTCCEE-----------------------------------EEEECSSCEEEEEECTTSSEEEEEECCBT
T ss_pred CCCeEEEEECCCCcEE-----------------------------------EEeecCCCeEEEEEccCCCEEEEecCCcc
Confidence 9999999998754310 011256789999999999999999999
Q ss_pred ---CcEEEEECCCceE-----------EEeeeccCcc--cEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 164 ---RTIKIWRTSDFKC-----------LESITNAHDD--AINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 164 ---~~i~iwd~~~~~~-----------~~~~~~~h~~--~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
+.|++||+..... +..+ ..|.. .+.+++|+|++. +++++.||.|++||+.+.. .....+
T Consensus 139 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~ 214 (369)
T 3zwl_B 139 KNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY---EYVDSI 214 (369)
T ss_dssp TBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT---EEEEEE
T ss_pred CCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc---EeEEEE
Confidence 9999999865431 1122 23444 899999999987 8889999999999997632 234455
Q ss_pred hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCC--------
Q 044557 227 ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADK-------- 296 (362)
Q Consensus 227 ~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~-------- 296 (362)
..|..+|.+++|+|++.+|++++.|+.|++||+.+... ...+. +...+.++.++++ ++++++.++
T Consensus 215 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 289 (369)
T 3zwl_B 215 DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV----LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTS 289 (369)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEE-CSSCEEEEEECSSSSEEEEEECCC--------
T ss_pred ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce----eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEe
Confidence 67899999999999999999999999999999986442 22233 6677888888754 888988888
Q ss_pred ------cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 297 ------TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 297 ------~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+++|+.. ...++..+.+|...|.+++|+|++ .+|++|+.||.|++|++..
T Consensus 290 ~~~~~~~i~~~d~~--~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 290 ANEGKFEARFYHKI--FEEEIGRVQGHFGPLNTVAISPQG---------TSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -----CEEEEEETT--TCCEEEEEECCSSCEEEEEECTTS---------SEEEEEETTSEEEEEEECH
T ss_pred cCCCcceeEEEecC--CCcchhheecccCcEEEEEECCCC---------CEEEEEcCCCeEEEEECcc
Confidence 89999954 356678899999999999998754 4799999999999999864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=285.14 Aligned_cols=294 Identities=10% Similarity=0.066 Sum_probs=204.7
Q ss_pred eecccCccceeeeEecC--------cEEEEecCCCeEEEeecCCCCcccceee--eccceeEEeecceeEEEEEcC-cee
Q 044557 13 TTLKGHNSYVSSLALAG--------KFLYTGSSDNEVRSWDCNTFSSELDQEF--LSNNNIVAVGKGAVKSLVVLA-DKL 81 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~~--------~~l~t~s~Dg~i~vWd~~~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~~~-~~l 81 (362)
.++.+|.+.|.+|+|.. .+||||+.||+||+||+........... ......+..|...+.++.+.+ +.|
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~l 280 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV 280 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEE
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeE
Confidence 45778999999999953 5999999999999999875421100000 001122344567889998864 469
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEE--EEecCC-CEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSAL--ALTKDE-TLLY 158 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~l~ 158 (362)
++|+.||+|++||++..... ...+..|...|.++ +|+|++ .+||
T Consensus 281 asgs~DgtV~lWD~~~~~~~---------------------------------~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVP---------------------------------SFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp EEEETTSEEEEEETTBCSSC---------------------------------SEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred EEEeCCCEEEEEECCCCCCc---------------------------------eEEeecccccEEEEEEEcCCCCCeEEE
Confidence 99999999999998743210 01224688999999 568887 8999
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCc--ccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHD--DAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~--~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
|||.|++|+|||+++++++..+. +|. ..|.+++|+|++. +++++.|++|++||+.++.... .+.+|..+|++
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~----~l~gH~~~V~s 402 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH----PLVSRETTITA 402 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE----EEEECSSCEEE
T ss_pred EeccCCeEEEEECCCCCcccccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce----eeecCCCceEE
Confidence 99999999999999877655543 343 2578999999886 7889999999999998765332 34579999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-----ccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCcee
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-----HTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~ 309 (362)
++|+|+|.+|++|+.|++|++||..... +..++. +...+.+++|+++ -++.... .+++|... .+..
T Consensus 403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-----~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~--~~~~~~~~-~~g~ 474 (524)
T 2j04_B 403 IGVSRLHPMVLAGSADGSLIITNAARRL-----LHGIKNSSATQKSLRLWKWDYSIKDDKYRIDS--SYEVYPLT-VNDV 474 (524)
T ss_dssp EECCSSCCBCEEEETTTEEECCBSCSST-----TTCC------CCCCEEEECBCCSSSCEEEECC--CCCCCC-------
T ss_pred EEeCCCCCeEEEEECCCEEEEEechHhh-----ccccccCccceeeeEEEEeccCCCCCeEEccC--Cceecccc-cCCc
Confidence 9999999999999999999999975421 011110 1124567777654 2222222 23334321 1345
Q ss_pred eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 310 CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 310 ~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++..+.+|...|.+++|+|++. .+.+||+|+.||+||||++..
T Consensus 475 ~~~~l~gh~~~V~~Vafsp~~~------~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 475 SKAKIDAHGINITCTKWNETSA------GGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -------CCCSCCCEEECCSTT------TTTEEEEECTTSEEEEEECSC
T ss_pred ceeeecCCCceEEEEECCCCCC------ccHHHHhhccCceEEEEEccc
Confidence 6788999999999999998753 235799999999999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=264.92 Aligned_cols=304 Identities=19% Similarity=0.293 Sum_probs=224.2
Q ss_pred ccceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeecc----ceeEEeecceeEEEEEcC-c
Q 044557 8 DHHCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSN----NNIVAVGKGAVKSLVVLA-D 79 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~----~~~~~~~~~~v~~i~~~~-~ 79 (362)
..+....+++|.+.|.+++|+ +++|++|+.||+|++||+.+............ ......+...+.++.+.+ +
T Consensus 32 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 32 LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp ECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred cCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence 345677889999999999994 57999999999999999876442221110000 000012567889998876 3
Q ss_pred --eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC---C
Q 044557 80 --KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD---E 154 (362)
Q Consensus 80 --~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~ 154 (362)
.+++++.|+.|++|++...... ....+...+.++.++|. +
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~ 156 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTA-----------------------------------DVFNFEETVYSHHMSPVSTKH 156 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEE-----------------------------------EEEECSSCEEEEEECSSCSSC
T ss_pred CcEEEEEeCCCeEEEeeCCCCccc-----------------------------------eeccCCCceeeeEeecCCCCC
Confidence 5999999999999998753210 01235567788888874 4
Q ss_pred CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcce-----------
Q 044557 155 TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHS----------- 221 (362)
Q Consensus 155 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~----------- 221 (362)
.++++++.|+.|++||+++++.+..+. .|...|.+++|+|++. +++++.||.|++||+........
T Consensus 157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 157 CLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp CEEEEEESSSSEEEEESSSSCCCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred cEEEEEcCCCeEEEEeCCCcceeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence 599999999999999999988877765 7899999999999986 77999999999999976542111
Q ss_pred -eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-cccee-EEEEE-eCCeEEEeeCCCc
Q 044557 222 -LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSI-LCMAV-VSDLVCSGSADKT 297 (362)
Q Consensus 222 -~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v-~~~~~-~~~~~~s~s~D~~ 297 (362)
.......|..+|.+++|+|++.+|++++.|+.|++||+.+............. ....+ ..... ....++.++.|+.
T Consensus 236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST 315 (408)
T ss_dssp CTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTE
T ss_pred eeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCE
Confidence 11223568899999999999999999999999999999865432111100000 01111 11112 2346788889999
Q ss_pred EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|++|+.. ...++..+.+|...|.+++|+|++ .+|++|+.||.|++||+..
T Consensus 316 i~v~d~~--~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 316 IAVYTVY--SGEQITMLKGHYKTVDCCVFQSNF---------QELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp EEEEETT--TCCEEEEECCCSSCEEEEEEETTT---------TEEEEEETTSCEEEEEECC
T ss_pred EEEEECc--CCcceeeeccCCCeEEEEEEcCCC---------CEEEEECCCCeEEEEeCCC
Confidence 9999964 456788999999999999998764 4699999999999999964
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=267.72 Aligned_cols=293 Identities=17% Similarity=0.220 Sum_probs=226.7
Q ss_pred ceeeeccc--CccceeeeEec--Cc-EEEEecCCCeEEEeec----CCCCcc----cceeeec---cceeEEeecceeEE
Q 044557 10 HCLTTLKG--HNSYVSSLALA--GK-FLYTGSSDNEVRSWDC----NTFSSE----LDQEFLS---NNNIVAVGKGAVKS 73 (362)
Q Consensus 10 ~~~~tl~g--H~~~V~~l~~~--~~-~l~t~s~Dg~i~vWd~----~~~~~~----~~~~~~~---~~~~~~~~~~~v~~ 73 (362)
++..++.. |.+.|.+++|+ ++ +|++|+.||+|++||+ .+.... ....+.. .......+...+.+
T Consensus 34 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (425)
T 1r5m_A 34 GFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTC 113 (425)
T ss_dssp CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEE
T ss_pred hhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEE
Confidence 34555655 55999999995 66 9999999999999998 553310 0000100 00001114558899
Q ss_pred EEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe
Q 044557 74 LVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT 151 (362)
Q Consensus 74 i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 151 (362)
+.+.++ .|++++.||.|++|+... .. ...+..|...|.+++|+
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~~~~-~~----------------------------------~~~~~~~~~~v~~~~~~ 158 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWNKTG-AL----------------------------------LNVLNFHRAPIVSVKWN 158 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTS-CE----------------------------------EEEECCCCSCEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCC-Ce----------------------------------eeeccCCCccEEEEEEC
Confidence 988765 599999999999998321 10 11223578899999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCceEEEeeeccCccc---------------EEEEEEcCCCcEEEEeCCCeEEEEeCCCC
Q 044557 152 KDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDA---------------INAVALSDDGDVYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~---------------v~~v~~~~~~~~~s~~~dg~i~iw~~~~~ 216 (362)
|++++|++++.|+.|++||+.+++.+..+. .+... +.+++|+|++.+++++.||.|++||+.++
T Consensus 159 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 237 (425)
T 1r5m_A 159 KDGTHIISMDVENVTILWNVISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK 237 (425)
T ss_dssp TTSSEEEEEETTCCEEEEETTTTEEEEEEC-CC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS
T ss_pred CCCCEEEEEecCCeEEEEECCCCcEEEEee-ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC
Confidence 999999999999999999999998877765 44444 88999999999999999999999999876
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCC
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSAD 295 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D 295 (362)
... ..+..|..+|.+++|+|++.+|++++.|+.|++||+...+. ...+.+|...|.++.++++ ++++++.|
T Consensus 238 ~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~l~~~~~d 309 (425)
T 1r5m_A 238 TPT----GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS----QNCFYGHSQSIVSASWVGDDKVISCSMD 309 (425)
T ss_dssp SCS----EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC----SEEECCCSSCEEEEEEETTTEEEEEETT
T ss_pred cee----eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc----ceEecCCCccEEEEEECCCCEEEEEeCC
Confidence 433 23457889999999999999999999999999999986543 2345678999999999876 99999999
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+.|++|+.. ...++..+.+|...|.+++|+|++ .+|++|+.||.|++||+.
T Consensus 310 ~~i~i~d~~--~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 310 GSVRLWSLK--QNTLLALSIVDGVPIFAGRISQDG---------QKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp SEEEEEETT--TTEEEEEEECTTCCEEEEEECTTS---------SEEEEEETTSCEEEEECH
T ss_pred CcEEEEECC--CCcEeEecccCCccEEEEEEcCCC---------CEEEEEECCCeEEEEECC
Confidence 999999964 356788889999999999998754 469999999999999985
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=270.55 Aligned_cols=296 Identities=17% Similarity=0.220 Sum_probs=224.6
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc---eeEEEecCCcEE
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD---KLFSAHQDHKIR 91 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~l~s~~~dg~i~ 91 (362)
+|...|.+++|+ +++|++|+.||+|++||+......... ...+..|...+.++.+.++ .+++++.|++|+
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINS-----MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCE-----EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccc-----hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 589999999994 789999999999999998752211100 1112235678889988754 599999999999
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-CCEEEEEECCCcEEEEE
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd 170 (362)
+||+............. .......|...|.+++|+|+ +.+|++++.|+.|++||
T Consensus 140 iwd~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPL-------------------------TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp BCBTTTTSSCTTTCCCB-------------------------CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred EEECCCCcccccccccc-------------------------ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 99997654111000000 00011257788999999999 78999999999999999
Q ss_pred CCCceEEEeeeccC-----cccEEEEEEcCCC-c-EEEEeCCC---eEEEEeCCCCCCcceeehhhh-ccccceeEEEEe
Q 044557 171 TSDFKCLESITNAH-----DDAINAVALSDDG-D-VYTGSADK---KIKVWRRSPGNKKHSLVDVLE-RHNSGINALALS 239 (362)
Q Consensus 171 ~~~~~~~~~~~~~h-----~~~v~~v~~~~~~-~-~~s~~~dg---~i~iw~~~~~~~~~~~~~~~~-~h~~~v~~i~~s 239 (362)
+++++.+..+...+ ...|.+++|+|++ . +++++.|+ .|++||+.++.. ....+. .|...|.+++|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT---PLQTLNQGHQKGILSLDWC 271 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS---CSBCCCSCCSSCEEEEEEC
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC---CcEEeecCccCceeEEEeC
Confidence 99998887765322 7889999999997 3 78899998 999999987532 223445 789999999999
Q ss_pred c-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeCCCCceeee----
Q 044557 240 C-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCL---- 311 (362)
Q Consensus 240 ~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~~~~~~~~~---- 311 (362)
| ++.+|++++.|+.|++||+.+.+ .+..+.+|...|.+++|++ .++++++.|+.|++|+.........
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~ 347 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESAE----QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQET 347 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSCC----EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCCc----cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccc
Confidence 9 99999999999999999998643 3456778999999999986 4899999999999999643221100
Q ss_pred -----------------------------eEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 312 -----------------------------AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 312 -----------------------------~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.....|...+.+++|+|+ +++|++|+.|++|+||++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---------g~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 348 ETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFG---------GKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp -------------------CCSCCCSSCCCCCSTTCCCSCCCEEETT---------TEEECBCTTSSCBCCBCCCC
T ss_pred cccccCCcccccccccccccccccccccccCCccccCCccceEEeeC---------CeEEEEeCCCCeEEEEEecc
Confidence 001126777778888765 46899999999999999864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=261.55 Aligned_cols=255 Identities=20% Similarity=0.309 Sum_probs=204.7
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecC
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQD 87 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~d 87 (362)
+++.+|++|.+.|++++|+ +++|++|+.||+|++||+......
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~----------------------------------- 46 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK----------------------------------- 46 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-----------------------------------
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce-----------------------------------
Confidence 5678899999999999995 789999999999999986421000
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC--CCEEEEEECCCc
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD--ETLLYSVSWDRT 165 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~ 165 (362)
.+ ..+..|...|.+++|+|+ +++|++|+.|+.
T Consensus 47 -~~---------------------------------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 47 -LI---------------------------------------------DTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp -EE---------------------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred -ee---------------------------------------------eEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 00 011247788999999877 899999999999
Q ss_pred EEEEECCCce--EEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 166 IKIWRTSDFK--CLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 166 i~iwd~~~~~--~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
|++||+.+++ .+..+ ..|...|.+++|+|+ +. +++++.||.|++||+........ ..+..|..+|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--IIIDAHAIGVNSASWAP 157 (379)
T ss_dssp EEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE--EEEECCTTCEEEEEECC
T ss_pred EEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee--EEecCCCCceEEEEEcC
Confidence 9999999886 44444 468899999999998 65 88999999999999987643322 23457899999999999
Q ss_pred -------------CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-----eEEEeeCCCcEEEee
Q 044557 241 -------------DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-----LVCSGSADKTIRIWR 302 (362)
Q Consensus 241 -------------~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~s~s~D~~i~~W~ 302 (362)
++.+|++++.|+.|++||++...........+.+|...|.+++|+++ ++++++.|+.|++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 69999999999999999998766655666778899999999999754 799999999999999
Q ss_pred CCCCc---eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GIDRN---YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~~~---~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..... ...+....+|...|++++|+|++ .+|++++.||.|++|++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSG---------NVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSS---------CCEEEEESSSSEEEEEEE
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCC---------CEEEEecCCCcEEEEeCC
Confidence 75432 22233345699999999998765 358899999999999986
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=250.38 Aligned_cols=293 Identities=18% Similarity=0.270 Sum_probs=214.3
Q ss_pred ceeccceeeecc--cCcc--ceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc
Q 044557 5 SVVDHHCLTTLK--GHNS--YVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD 79 (362)
Q Consensus 5 ~~~~~~~~~tl~--gH~~--~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (362)
++.+..+.++|. +..+ .+..|+|+ +++||+ +.|++|||||+++.... ..+. ...|...|.++.+.++
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAv-g~D~tV~iWd~~tg~~~--~~~~-----~~~~~~~V~~v~~~~~ 78 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAV-ALDNSVYLWSASSGDIL--QLLQ-----MEQPGEYISSVAWIKE 78 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEE-EETTEEEEEETTTCCEE--EEEE-----CCSTTCCEEEEEECTT
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCCEEEE-EeCCEEEEEECCCCCEE--EEEE-----ecCCCCeEEEEEECCC
Confidence 344455555664 2332 35778996 445555 56999999998764321 1111 0123457889988764
Q ss_pred --eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 80 --KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 80 --~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
.+++|+.|++|++|+++.++. ...+.+|...+.++ ++++..+
T Consensus 79 ~~~l~sgs~Dg~v~iw~~~~~~~----------------------------------~~~~~~h~~~~~~~--~~~~~~l 122 (318)
T 4ggc_A 79 GNYLAVGTSSAEVQLWDVQQQKR----------------------------------LRNMTSHSARVGSL--SWNSYIL 122 (318)
T ss_dssp SSEEEEEETTSEEEEEETTTTEE----------------------------------EEEEECCSSCEEEE--EEETTEE
T ss_pred CCEEEEEECCCcEEEeecCCcee----------------------------------EEEecCccceEEEe--ecCCCEE
Confidence 599999999999999875431 11223566666655 4556799
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
++++.++.+++|+............+|...+..+++++++. +++++.||.|++||+.+++...........|...|.++
T Consensus 123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 202 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202 (318)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEE
T ss_pred EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEE
Confidence 99999999999998876544334458999999999999987 88999999999999988765444444555678899999
Q ss_pred EEecCCCEE---EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEE--EeeCCCcEEEeeCCCCcee
Q 044557 237 ALSCDGSVL---YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVC--SGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 237 ~~s~~~~~l---~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~--s~s~D~~i~~W~~~~~~~~ 309 (362)
.++|++..+ ++++.+++|++||....... ....+...+..+.+.+. .++ +++.|+.|++|+.. +.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~--~~~ 275 (318)
T 4ggc_A 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP--TMA 275 (318)
T ss_dssp EECTTSTTEEEEEECTTTCEEEEEETTTCCEE-----EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT--TCC
T ss_pred EecCCCCcEEEEEecCCCCEEEEEeccccccc-----ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECC--CCc
Confidence 999977643 47788999999998764321 12335666778887653 444 45689999999964 467
Q ss_pred eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 310 CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 310 ~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+++++.||.+.|++++|+|++ .+|+|||.||+|||||+.
T Consensus 276 ~~~~l~gH~~~V~~l~~spdg---------~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 276 KVAELKGHTSRVLSLTMSPDG---------ATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEEECCCSSCEEEEEECTTS---------SCEEEEETTTEEEEECCS
T ss_pred EEEEEcCCCCCEEEEEEcCCC---------CEEEEEecCCeEEEEECC
Confidence 789999999999999998764 469999999999999984
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=268.93 Aligned_cols=292 Identities=15% Similarity=0.205 Sum_probs=222.9
Q ss_pred CccceeeeEec--Cc-EEEEe----------cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 18 HNSYVSSLALA--GK-FLYTG----------SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 18 H~~~V~~l~~~--~~-~l~t~----------s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
+...|.+++|+ ++ +|++| +.|++|++||+.+........ ...+...+.++.+.++ .|+
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~ 83 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA-------SLQVDSKFNDLDWSHNNKIIA 83 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC-------CCCCSSCEEEEEECSSSSCEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE-------EEecCCceEEEEECCCCCeEE
Confidence 45678889985 44 89999 899999999987643211100 0124567888888765 589
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-CCEEEEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-ETLLYSVS 161 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s 161 (362)
+++.||.|++|++........ ....+..|...|.+++|+|+ +++|++++
T Consensus 84 ~~~~dg~v~vw~~~~~~~~~~------------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 133 (416)
T 2pm9_A 84 GALDNGSLELYSTNEANNAIN------------------------------SMARFSNHSSSVKTVKFNAKQDNVLASGG 133 (416)
T ss_dssp EEESSSCEEEECCSSTTSCCC------------------------------EEEECCCSSSCCCEEEECSSSTTBEEEEC
T ss_pred EEccCCeEEEeeccccccccc------------------------------chhhccCCccceEEEEEcCCCCCEEEEEc
Confidence 999999999999875221000 11122468889999999998 89999999
Q ss_pred CCCcEEEEECCCce------EEEee--eccCcccEEEEEEcCC-Cc-EEEEeCCCeEEEEeCCCCCCcceeeh--hhhcc
Q 044557 162 WDRTIKIWRTSDFK------CLESI--TNAHDDAINAVALSDD-GD-VYTGSADKKIKVWRRSPGNKKHSLVD--VLERH 229 (362)
Q Consensus 162 ~d~~i~iwd~~~~~------~~~~~--~~~h~~~v~~v~~~~~-~~-~~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~h 229 (362)
.|+.|++||+.+.+ ....+ ...|...|.+++|+|+ +. +++++.||.|++||+.++.....+.. ...+|
T Consensus 134 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 213 (416)
T 2pm9_A 134 NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI 213 (416)
T ss_dssp SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCC
T ss_pred CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccccc
Confidence 99999999998876 22222 2368889999999998 44 78999999999999987643322211 01122
Q ss_pred ccceeEEEEecCC-CEEEEEcCCC---cEEEEeccCCCCcEEEEEeec-CccceeEEEEEeC---CeEEEeeCCCcEEEe
Q 044557 230 NSGINALALSCDG-SVLYSGACDR---SIIVWEKEEDDGNILVVGALR-GHTKSILCMAVVS---DLVCSGSADKTIRIW 301 (362)
Q Consensus 230 ~~~v~~i~~s~~~-~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~---~~~~s~s~D~~i~~W 301 (362)
..+|.+++|+|++ .+|++++.|+ .|++||++..... ...+. +|...|.+++|++ .++++++.|+.|++|
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence 7889999999997 6899999999 9999999875322 23456 8999999999975 389999999999999
Q ss_pred eCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 302 RGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 302 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+.. ..+++..+.+|...|.+++|+|++. .+|++++.|+.|++|++...
T Consensus 291 d~~--~~~~~~~~~~~~~~v~~~~~s~~~~--------~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 291 NPE--SAEQLSQFPARGNWCFKTKFAPEAP--------DLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CSS--SCCEEEEEECSSSCCCCEEECTTCT--------TEEEECCSSSEEEEEESCCC
T ss_pred eCC--CCccceeecCCCCceEEEEECCCCC--------CEEEEEecCCcEEEEEccCC
Confidence 964 3567888999999999999987642 47999999999999999654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=260.45 Aligned_cols=280 Identities=18% Similarity=0.221 Sum_probs=215.7
Q ss_pred ccCccc--eeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEE
Q 044557 16 KGHNSY--VSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIR 91 (362)
Q Consensus 16 ~gH~~~--V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~ 91 (362)
.+|... +.++.++++.+++++.|++|++||+.+..... ... ..+...+.++.+.++ .|++++.||.|+
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~--~~~------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSA--LAE------TDESTYVASVKWSHDGSFLSVGLGNGLVD 159 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEE--EEE------CCTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeE--eee------cCCCCCEEEEEECCCCCEEEEECCCCeEE
Confidence 477665 45577778889999999999999987643211 110 114567888888764 599999999999
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
+|++..+.. ...+..|...|.+++|+ +++|++|+.|+.|++||+
T Consensus 160 iwd~~~~~~----------------------------------~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~ 203 (401)
T 4aez_A 160 IYDVESQTK----------------------------------LRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDV 203 (401)
T ss_dssp EEETTTCCE----------------------------------EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEET
T ss_pred EEECcCCeE----------------------------------EEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEec
Confidence 999865431 11223578899999994 579999999999999999
Q ss_pred CC-ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC-EEEEE
Q 044557 172 SD-FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSG 248 (362)
Q Consensus 172 ~~-~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~ 248 (362)
+. ...+..+ ..|...|.+++|+|++. +++++.||.|++||+.++.. ...+..|..+|.+++|+|++. .++++
T Consensus 204 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 204 RIANHQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP----KFTKTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp TSSSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE----EEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred ccCcceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc----cEEecCCcceEEEEEECCCCCCEEEEe
Confidence 84 4445544 47999999999999987 88999999999999987543 333456899999999999775 55565
Q ss_pred c--CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEE--eeCCCcEEEeeCCCCceeeeeEecCCCCcEE
Q 044557 249 A--CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCS--GSADKTIRIWRGIDRNYTCLAVLEGHRGPVK 322 (362)
Q Consensus 249 ~--~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s--~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~ 322 (362)
+ .|+.|++||+.+... +..+. +...|.+++|+++ .+++ |+.|+.|++|+...........+.+|...|.
T Consensus 279 ~gs~d~~i~i~d~~~~~~----~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~ 353 (401)
T 4aez_A 279 GGTMDKQIHFWNAATGAR----VNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL 353 (401)
T ss_dssp CCTTTCEEEEEETTTCCE----EEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCC
T ss_pred cCCCCCEEEEEECCCCCE----EEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEE
Confidence 4 799999999986542 22333 5667999999764 6777 5589999999976544555667889999999
Q ss_pred EEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+++|+|++ .+|++|+.||+|++|++..
T Consensus 354 ~~~~s~dg---------~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 354 YSALSPDG---------RILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEECTTS---------SEEEEECTTSEEEEEECCC
T ss_pred EEEECCCC---------CEEEEEeCCCcEEEEECCC
Confidence 99998754 4799999999999999964
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=262.71 Aligned_cols=268 Identities=17% Similarity=0.254 Sum_probs=186.7
Q ss_pred EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec------CCcEEEEecCCCCCCc
Q 044557 31 FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ------DHKIRVWKINNQEPDH 102 (362)
Q Consensus 31 ~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~------dg~i~~w~~~~~~~~~ 102 (362)
.+++++.+...+.|++.... ...|+..|.++.+++| .|++++. |++|++|+...+.+..
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~-------------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTA-------------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred eEEecCCCccccccCCCCCC-------------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 44555667888899864321 1236778999999876 4888886 6778888765443211
Q ss_pred ccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEe---
Q 044557 103 QKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLES--- 179 (362)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~--- 179 (362)
.. ......|...|.+++|+|++++ ++++.|++|+|||+.+++....
T Consensus 85 ~~------------------------------~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~ 133 (357)
T 4g56_B 85 SL------------------------------CTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKF 133 (357)
T ss_dssp GG------------------------------CSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCE
T ss_pred eE------------------------------ecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEee
Confidence 00 0112468889999999999865 5678899999999988765432
Q ss_pred eeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC-EEEEEcCCCcEEEE
Q 044557 180 ITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVW 257 (362)
Q Consensus 180 ~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~d~~i~~w 257 (362)
...+|...|.+++|+|++. +++++.||+|++||+.++. ....+..|...|++++|+|++. ++++++.|++|++|
T Consensus 134 ~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~----~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~w 209 (357)
T 4g56_B 134 AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA----VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209 (357)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEEC
T ss_pred ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEE
Confidence 2246899999999999997 8899999999999998764 3445577999999999999875 78999999999999
Q ss_pred eccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccC
Q 044557 258 EKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCD 334 (362)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~ 334 (362)
|+++++... ......|...+.+++|+++ ++++|+.|+.|++|+.. ...++..+.+|...|++++|+|++.
T Consensus 210 d~~~~~~~~--~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~l~~sp~~~--- 282 (357)
T 4g56_B 210 DTRKPKPAT--RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK--NPDSAQTSAVHSQNITGLAYSYHSS--- 282 (357)
T ss_dssp CTTSSSCBC--BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS--CGGGCEEECCCSSCEEEEEECSSSS---
T ss_pred ECCCCceee--eeeeccccccccchhhhhcccceEEEeecccceeEEECC--CCcEeEEEeccceeEEEEEEcCCCC---
Confidence 998654321 1233456778999999753 79999999999999964 3566788999999999999987643
Q ss_pred CCCCceEEEecCCCCcEEEEeccc
Q 044557 335 SSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 335 ~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+|+|||.|++|+|||+..
T Consensus 283 -----~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 283 -----PFLASISEDCTVAVLDADF 301 (357)
T ss_dssp -----CCEEEEETTSCEEEECTTS
T ss_pred -----CEEEEEeCCCEEEEEECCC
Confidence 4799999999999999864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=254.87 Aligned_cols=251 Identities=21% Similarity=0.344 Sum_probs=200.9
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
..++.+++..|...|.+++|+ +.+|++|+.|+++++|++........ ......+..|...+.++.+.++ .+++
T Consensus 95 ~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~t 171 (354)
T 2pbi_B 95 TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM---AAKKKSVAMHTNYLSACSFTNSDMQILT 171 (354)
T ss_dssp TCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS---GGGCEEEEECSSCEEEEEECSSSSEEEE
T ss_pred CCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc---cccceeeeccCCcEEEEEEeCCCCEEEE
Confidence 345667788899999999994 78999999999999999864321111 1112334557778888888764 5999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--CCCEEEEEE
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK--DETLLYSVS 161 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s 161 (362)
++.|++|++||++.+.. ...+.+|...|.+++++| ++++|++|+
T Consensus 172 ~s~D~~v~lwd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 172 ASGDGTCALWDVESGQL----------------------------------LQSFHGHGADVLCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp EETTSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred EeCCCcEEEEeCCCCeE----------------------------------EEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence 99999999999875431 122346888999999987 568999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
.|+.|++||+++++++..+. .|...|.+++|+|++. +++++.|++|++||+........+ ....+...+.+++|+|
T Consensus 218 ~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~--~~~~~~~~~~~~~~s~ 294 (354)
T 2pbi_B 218 CDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY--SKESIIFGASSVDFSL 294 (354)
T ss_dssp TTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCTTCCSCEEEEEECT
T ss_pred CCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE--cCCCcccceeEEEEeC
Confidence 99999999999999888775 7999999999999987 889999999999999765322111 1122345789999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
+|.+|++|+.|++|++||+.++. .+..+.+|...|.+++|+++ +|++||.|++|++|+
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~----~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGS----RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCS----EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCc----eEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999997643 34567899999999999875 899999999999995
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=263.41 Aligned_cols=279 Identities=19% Similarity=0.208 Sum_probs=208.4
Q ss_pred ceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEecCCcEEEEecC
Q 044557 21 YVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 21 ~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~~dg~i~~w~~~ 96 (362)
.+++++| ++++|++|+.|++|++||+.+...... .. . ...+....+. ++.|++++.|+.|++|++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~--~~-------~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 127 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM--LK-------R-ADYTAVDTAKLQMRRFILGTTEGDIKVLDSN 127 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT--SC-------S-CCEEEEEEECSSSCEEEEEETTSCEEEECTT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeE--Ee-------c-CCceEEEEEecCCCEEEEEECCCCEEEEeCC
Confidence 3446777 478999999999999999865332111 00 0 1112222333 4569999999999999986
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceE
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 176 (362)
.... . ..+..|.+.|.+++|+|++++|++|+.|+.|++||+++++.
T Consensus 128 ~~~~-------~---------------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 173 (420)
T 3vl1_A 128 FNLQ-------R---------------------------EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173 (420)
T ss_dssp SCEE-------E---------------------------EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC
T ss_pred Ccce-------e---------------------------eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC
Confidence 4321 0 01125888999999999999999999999999999999888
Q ss_pred EEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccc---------------------ccee
Q 044557 177 LESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHN---------------------SGIN 234 (362)
Q Consensus 177 ~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~---------------------~~v~ 234 (362)
+..+. +|...|.+++|+|++. +++++.||.|++||+.++.....+ .....|. .++.
T Consensus 174 ~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 174 PRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF-NRKENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE-CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred ceEEc-CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEe-ecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence 77775 7999999999999987 889999999999999876533322 1111233 4445
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeee
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCL 311 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~ 311 (362)
+++|+|++++|++|+.||.|++||+.+... ......+|...|.+++|+++ ++++++.|+.|++|+..... .++
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-~~~ 327 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE-CPV 327 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCE---EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCS
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCce---eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-Cch
Confidence 555678999999999999999999986542 22234568889999999865 89999999999999975422 335
Q ss_pred eEecC-CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 312 AVLEG-HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 312 ~~l~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
..+.+ |...|.++.+. + +.+|++|+.|++|++|++..+
T Consensus 328 ~~~~~~~~~~v~~~~~~-~---------~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 328 GEFLINEGTPINNVYFA-A---------GALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEEESTTSCEEEEEEE-T---------TEEEEEETTTEEEEEEEECCT
T ss_pred hhhhccCCCCceEEEeC-C---------CCEEEEecCCccEEEEeccCC
Confidence 66666 67788888553 2 257999999999999998653
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=261.98 Aligned_cols=277 Identities=20% Similarity=0.328 Sum_probs=207.8
Q ss_pred ceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCC
Q 044557 21 YVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINN 97 (362)
Q Consensus 21 ~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~ 97 (362)
.+..|+|+ ++.|++| .|++|+|||..+..... .+. ...+...|.++.+.++ .|++|+.||+|++||++.
T Consensus 107 y~~~l~wS~~n~lAvg-ld~tV~lWd~~tg~~~~--~~~-----~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 107 YLNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQ--LLQ-----MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp TCBCEEECTTSEEEEE-ETTEEEEEETTTCCEEE--EEE-----CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cceeEEECCCCEEEEE-eCCEEEEEECCCCCEEE--EEE-----ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence 35667886 4566655 69999999987643211 110 0123457899999765 599999999999999875
Q ss_pred CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEE
Q 044557 98 QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCL 177 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 177 (362)
+.. ...+.+|...+.+++++ +.+|++|+.|+.+++||.......
T Consensus 179 ~~~----------------------------------~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~ 222 (420)
T 4gga_A 179 QKR----------------------------------LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH 222 (420)
T ss_dssp TEE----------------------------------EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred CcE----------------------------------EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccccee
Confidence 421 11223577888887664 679999999999999998875433
Q ss_pred EeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC-EEEE--EcCCCc
Q 044557 178 ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYS--GACDRS 253 (362)
Q Consensus 178 ~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s--~~~d~~ 253 (362)
.....+|...+..+.++|++. +++++.|+.|++|+..++............|...|.+++|+|++. .+++ |+.|++
T Consensus 223 ~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~ 302 (420)
T 4gga_A 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 302 (420)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE
T ss_pred eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE
Confidence 333348999999999999987 889999999999999877654444445567899999999999665 4444 468999
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEE--eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCS--GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s--~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
|++||+.++. ....+..| ..+.++.+.++ .+++ |+.|+.|++|+.. ...++.+|.||.+.|++++|+|+
T Consensus 303 I~iwd~~t~~----~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~--~~~~v~~l~gH~~~V~~l~~spd 375 (420)
T 4gga_A 303 IRIWNVCSGA----CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLSLTMSPD 375 (420)
T ss_dssp EEEEETTTTE----EEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETT--TCCEEEEECCCSSCEEEEEECTT
T ss_pred EEEEeCCccc----cceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECC--CCcEEEEEcCCCCCEEEEEEcCC
Confidence 9999998643 23334444 45777777654 5554 4489999999964 46778999999999999999876
Q ss_pred CCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 330 NDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 330 ~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+ .+|+|||.|++|||||+.
T Consensus 376 g---------~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 376 G---------ATVASAAADETLRLWRCF 394 (420)
T ss_dssp S---------SCEEEEETTTEEEEECCS
T ss_pred C---------CEEEEEecCCeEEEEECC
Confidence 5 469999999999999984
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-34 Score=260.82 Aligned_cols=293 Identities=16% Similarity=0.263 Sum_probs=217.3
Q ss_pred ceeeecccCccceeee-Ee--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 10 HCLTTLKGHNSYVSSL-AL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l-~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
++..++.+| .+.++ .+ ++++|++|+.||+|++||+.+... .. ....|...+.++.+.++ .|+++
T Consensus 89 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~-------~~~~h~~~v~~~~~~~~~~~l~s~ 157 (420)
T 3vl1_A 89 DGSKMLKRA--DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ--RE-------IDQAHVSEITKLKFFPSGEALISS 157 (420)
T ss_dssp ETTTTSCSC--CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE--EE-------ETTSSSSCEEEEEECTTSSEEEEE
T ss_pred ceeeEEecC--CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce--ee-------ecccccCccEEEEECCCCCEEEEE
Confidence 344455566 33333 33 478999999999999999864321 11 11235678899988755 59999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|++|++||+...... ..+..|...|.+++|+|++++|++++.|+
T Consensus 158 s~d~~i~iwd~~~~~~~----------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 203 (420)
T 3vl1_A 158 SQDMQLKIWSVKDGSNP----------------------------------RTLIGHRATVTDIAIIDRGRNVLSASLDG 203 (420)
T ss_dssp ETTSEEEEEETTTCCCC----------------------------------EEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred eCCCeEEEEeCCCCcCc----------------------------------eEEcCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 99999999999754311 12346889999999999999999999999
Q ss_pred cEEEEECCCceEEEeeec--cCcccEEEEE---------------------EcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 165 TIKIWRTSDFKCLESITN--AHDDAINAVA---------------------LSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~--~h~~~v~~v~---------------------~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
.|++||+++++++..+.. .|...+.+++ |+|++. +++++.||.|++||+.++....
T Consensus 204 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 283 (420)
T 3vl1_A 204 TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI 283 (420)
T ss_dssp CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE
T ss_pred cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE
Confidence 999999999988877652 2444455554 467886 8899999999999998765332
Q ss_pred eeehhhhccccceeEEEEecCCC-EEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCC-eEEEeeCCCc
Q 044557 221 SLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSD-LVCSGSADKT 297 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~s~s~D~~ 297 (362)
. ....|..+|.+++|+|++. +|++|+.||.|++||+++...... .+.+ |...|.++.+.+. ++++++.|+.
T Consensus 284 ~---~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 284 Q---LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG---EFLINEGTPINNVYFAAGALFVSSGFDTS 357 (420)
T ss_dssp E---ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE---EEEESTTSCEEEEEEETTEEEEEETTTEE
T ss_pred E---cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh---hhhccCCCCceEEEeCCCCEEEEecCCcc
Confidence 2 2345788999999999999 999999999999999987544222 2333 6677888877654 8999999999
Q ss_pred EEEeeCCCCc-------eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 298 IRIWRGIDRN-------YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 298 i~~W~~~~~~-------~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
|++|+..... ......+.+|...|.+++|+|++. ..+.++++| .+|.+++|++..|
T Consensus 358 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~~g~l~a~g-~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 358 IKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE-----SNGEVLEVG-KNNFCALYNLSNP 420 (420)
T ss_dssp EEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS-----SSCEEEEEE-TTTEEEEEESCC-
T ss_pred EEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC-----CcceEEEEc-CCceEEEEeccCC
Confidence 9999964311 011234678999999999998754 223455554 6789999999765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=255.26 Aligned_cols=282 Identities=11% Similarity=0.124 Sum_probs=220.6
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--Cc-eeEEEe
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--AD-KLFSAH 85 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~-~l~s~~ 85 (362)
.+....+|.+.|++++|+ +++|++|+.|++|++||+........ ......+...+.++.+. +. .+++++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD------LLQSLRYKHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE------EEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc------ceeeeecCCceEEEEECCCCCcEEEEEc
Confidence 445567999999999995 78999999999999999875431111 11123456778888876 45 799999
Q ss_pred cCCcEEEEec-CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee--ecCceeEEEEecCCCEEEEEEC
Q 044557 86 QDHKIRVWKI-NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH--HVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 86 ~dg~i~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
.||.|++|++ ..... ..+.. |...|.+++|+| +++|++++.
T Consensus 77 ~dg~i~~wd~~~~~~~-----------------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~ 120 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF-----------------------------------QALTNNEANLGICRICKYG-DDKLIAASW 120 (342)
T ss_dssp TTSCEEEECSSSSSSE-----------------------------------EECBSCCCCSCEEEEEEET-TTEEEEEET
T ss_pred CCCeEEEEEeccCCce-----------------------------------EeccccCCCCceEEEEeCC-CCEEEEEcC
Confidence 9999999998 65321 11124 788999999999 999999999
Q ss_pred CCcEEEEECCC---------ceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCC-CCCcceeehhhhccccc
Q 044557 163 DRTIKIWRTSD---------FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSP-GNKKHSLVDVLERHNSG 232 (362)
Q Consensus 163 d~~i~iwd~~~---------~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~h~~~ 232 (362)
|+.|++||+++ .+++..+. |...|.+++|+|++ +++++.|+.|++||+.. +.... ......|...
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~ 195 (342)
T 1yfq_A 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNG--TIEESGLKYQ 195 (342)
T ss_dssp TSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCC--EEEECSCSSC
T ss_pred CCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccc--eeeecCCCCc
Confidence 99999999887 66555543 78899999999988 99999999999999987 43221 1123357889
Q ss_pred eeEEEEec-CCCEEEEEcCCCcEEEEeccCC-----CCcEEEEEeecCccc---------eeEEEEEeCC--eEEEeeCC
Q 044557 233 INALALSC-DGSVLYSGACDRSIIVWEKEED-----DGNILVVGALRGHTK---------SILCMAVVSD--LVCSGSAD 295 (362)
Q Consensus 233 v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~~~~~~h~~---------~v~~~~~~~~--~~~s~s~D 295 (362)
|.+++|+| ++.++++++.||.|++|++... ... ...+.+|.. .|.+++|+++ ++++++.|
T Consensus 196 i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 272 (342)
T 1yfq_A 196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK---RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT---CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc---ceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence 99999999 9999999999999999999765 122 223455544 8999999764 89999999
Q ss_pred CcEEEeeCCCCceeeeeEecCC-CCcEEEEEeeecCCccCCCCCceEEEecCCCCc-EEEEe
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGH-RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD-IKVWQ 355 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~-i~~W~ 355 (362)
+.|++|+.. ..+++..+.+| ...|.+++ |++ .+|++||.||+ .+.|.
T Consensus 273 g~i~vwd~~--~~~~~~~~~~~h~~~v~~~~--~~~---------~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 273 GIISCWNLQ--TRKKIKNFAKFNEDSVVKIA--CSD---------NILCLATSDDTFKTNAA 321 (342)
T ss_dssp SCEEEEETT--TTEEEEECCCCSSSEEEEEE--ECS---------SEEEEEEECTHHHHCSS
T ss_pred ceEEEEcCc--cHhHhhhhhcccCCCceEec--CCC---------CeEEEEecCCccccccc
Confidence 999999964 35668889998 99999998 554 46999999999 44443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=252.03 Aligned_cols=300 Identities=14% Similarity=0.212 Sum_probs=206.5
Q ss_pred eecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC----ceeEEEec
Q 044557 13 TTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA----DKLFSAHQ 86 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~----~~l~s~~~ 86 (362)
..++||.+.|++++|+ +++|++|+.||+|++||+......... ...+..|...+.++.+.+ +.|++++.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWEL-----SDSWRAHDSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEE-----EEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCccee-----cceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence 4578999999999994 789999999999999998754321110 112234677899998864 46999999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC--CCEEEEEECCC
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD--ETLLYSVSWDR 164 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~ 164 (362)
|++|++||++......... .......+..|...|.+++|+|+ +++|++++.|+
T Consensus 80 dg~v~vwd~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 134 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGR-------------------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG 134 (351)
T ss_dssp TSCEEEEEECTTSCTTSSC-------------------------SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC
T ss_pred CCeEEEEecCCCccccccc-------------------------CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC
Confidence 9999999997654211000 00011223468889999999999 99999999999
Q ss_pred cEEEEECCCceEEEeee------------ccCcccEEEEEEcCC---Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc
Q 044557 165 TIKIWRTSDFKCLESIT------------NAHDDAINAVALSDD---GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER 228 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~------------~~h~~~v~~v~~~~~---~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 228 (362)
.|++||+++++.+..+. ..|...+.+++|+|+ +. +++++.|+.+.+|+...+.. .....+..
T Consensus 135 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 212 (351)
T 3f3f_A 135 ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL--HVAAKLPG 212 (351)
T ss_dssp EEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE--EEEEECCC
T ss_pred cEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce--eeeeecCC
Confidence 99999998765433221 257778999999996 54 88999999998887765432 23445667
Q ss_pred cccceeEEEEecCC----CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC------CeEEEeeCCCcE
Q 044557 229 HNSGINALALSCDG----SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS------DLVCSGSADKTI 298 (362)
Q Consensus 229 h~~~v~~i~~s~~~----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~s~s~D~~i 298 (362)
|..+|++++|+|++ .+|++|+.||.|++||+......... ..+........... .....+..+..+
T Consensus 213 h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (351)
T 3f3f_A 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS----EESLTNSNMFDNSADVDMDAQGRSDSNTEEKA 288 (351)
T ss_dssp CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------
T ss_pred CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc----CCcccceeccCCCcccccccccccccccceee
Confidence 99999999999998 89999999999999999864332211 11112222222211 122334455566
Q ss_pred EEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 299 RIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
++|+ .....++..+.+|...|++++|+|++ .+|++|+.||.|++|++...
T Consensus 289 ~~~~--~~~~~~~~~~~~h~~~v~~~~~s~~~---------~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 289 ELQS--NLQVELLSEHDDHNGEVWSVSWNLTG---------TILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp --CC--SEEEEEEEEECTTSSCEEEEEECSSS---------CCEEEEETTSCEEEEEECTT
T ss_pred eecc--cccccEEEEEecccccEEEEEEcCCC---------CEEEEecCCCcEEEEecCcC
Confidence 6665 33567788899999999999998764 46999999999999999753
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=262.24 Aligned_cols=265 Identities=20% Similarity=0.336 Sum_probs=197.1
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLF 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~ 82 (362)
..++.+++++|...|.+++|+ +++|++|+.|++|++||+........ .......+..|.+.+.++.+.+ ..|+
T Consensus 97 ~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~--~~~~~~~~~gh~~~v~~~~~~~~~~~~l~ 174 (380)
T 3iz6_a 97 TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG--NMPVSRVLTGHKGYASSCQYVPDQETRLI 174 (380)
T ss_dssp TTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC--SSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred CCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC--CccceeeccCCCcceEEEEEecCCCCEEE
Confidence 456788899999999999994 78999999999999999865321100 0001122334566677776654 3599
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVS 161 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s 161 (362)
+++.|++|++||+..+... ..... ....+|...|.+++++| ++++|++|+
T Consensus 175 s~s~D~~i~~wd~~~~~~~-------~~~~~----------------------~~~~~h~~~v~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 175 TGSGDQTCVLWDVTTGQRI-------SIFGS----------------------EFPSGHTADVLSLSINSLNANMFISGS 225 (380)
T ss_dssp EECTTSCEEEECTTTCCEE-------EEECC----------------------CSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred EECCCCcEEEEEcCCCcEE-------EEeec----------------------ccCCCCccCeEEEEeecCCCCEEEEEE
Confidence 9999999999999765421 10000 00025788899999976 889999999
Q ss_pred CCCcEEEEECCC-ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehh---hhccccceeEE
Q 044557 162 WDRTIKIWRTSD-FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDV---LERHNSGINAL 236 (362)
Q Consensus 162 ~d~~i~iwd~~~-~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~h~~~v~~i 236 (362)
.|++|++||++. .+.+..+ .+|...|.+++|+|++. +++++.||+|++||+.++.....+... ...+...|+++
T Consensus 226 ~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 304 (380)
T 3iz6_a 226 CDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV 304 (380)
T ss_dssp TTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE
T ss_pred CCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE
Confidence 999999999974 4555555 47999999999999987 889999999999999876533222110 11223458999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
+|+|+|++|++|+.||.|++||....+..........+|.+.|.+++|+++ +|+|||.|++|++|+..
T Consensus 305 ~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred EECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 999999999999999999999987644221111122689999999999865 89999999999999954
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=267.93 Aligned_cols=323 Identities=17% Similarity=0.201 Sum_probs=218.4
Q ss_pred cceeeecccCccceeeeEec--Cc-EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc---eeEEEEEcCc---
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GK-FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG---AVKSLVVLAD--- 79 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~-~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~--- 79 (362)
.+++.++.+|.+.|.++.|+ ++ .+++++.|++|++||+.+.. ... .+..+.. .+.++.+.++
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~-------~~~~~~~~~~~v~~~~~~~~~~~ 220 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSA-------SDRTHHKQGSFVRDVEFSPDSGE 220 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEE-------EECSSSCTTCCEEEEEECSTTCC
T ss_pred CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eee-------eecccCCCCceEEEEEECCCCCC
Confidence 34677889999999999995 44 89999999999999976532 111 1122445 7888888765
Q ss_pred eeEEEecCCcEEEEecCCCCCCccc-------ceeeeeccCCCchhhhhccccccceeeeeeeeEEee--ecC------c
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQK-------YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH--HVD------A 144 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~------~ 144 (362)
.+++++.|+.|++||+..+...... ...+..+.......+.....++.+.+++........ ... .
T Consensus 221 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 300 (615)
T 1pgu_A 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ 300 (615)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGC
T ss_pred EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCc
Confidence 5999999999999998765421110 000000000011111111112223333332221111 112 1
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcc---------------------------------cEEEE
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD---------------------------------AINAV 191 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~---------------------------------~v~~v 191 (362)
+.++.++ +++++++++.|+.|++||+.+++.+..+. .|.. .|.++
T Consensus 301 ~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~ 378 (615)
T 1pgu_A 301 QVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS-GHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSL 378 (615)
T ss_dssp EEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC-CCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEE
T ss_pred eeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEe-CCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEE
Confidence 3455554 77888888888889898888776665543 3444 44455
Q ss_pred EEcCCCcEEEEeCCCeEEEEeCCCCCC-----------------------------------------------------
Q 044557 192 ALSDDGDVYTGSADKKIKVWRRSPGNK----------------------------------------------------- 218 (362)
Q Consensus 192 ~~~~~~~~~s~~~dg~i~iw~~~~~~~----------------------------------------------------- 218 (362)
+|++++.+++++.|+.|++|++.++..
T Consensus 379 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (615)
T 1pgu_A 379 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY 458 (615)
T ss_dssp ECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSE
T ss_pred EECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCE
Confidence 553344566777777777776532100
Q ss_pred -------cc----------eee-hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-cccee
Q 044557 219 -------KH----------SLV-DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSI 279 (362)
Q Consensus 219 -------~~----------~~~-~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v 279 (362)
.. .+. ..+..|..+|++++|+|++++|++++.|+.|++||+.+.+ .+..+.+ |...|
T Consensus 459 l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~h~~~v 534 (615)
T 1pgu_A 459 VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE----VKTSRWAFRTSKI 534 (615)
T ss_dssp EEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEECCSCCCSSCE
T ss_pred EEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc----ceeEeecCCCCce
Confidence 00 000 3445688899999999999999999999999999997643 3456677 99999
Q ss_pred EEEEEeC----------C--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 280 LCMAVVS----------D--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 280 ~~~~~~~----------~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
.+++|++ + ++++++.|+.|++|+.... ..++..+.+|...|.+++|+|++ . |++++.
T Consensus 535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~l~~s~~~---------~-l~s~~~ 603 (615)
T 1pgu_A 535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-MKIIKALNAHKDGVNNLLWETPS---------T-LVSSGA 603 (615)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-TCCEEETTSSTTCEEEEEEEETT---------E-EEEEET
T ss_pred eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC-ceechhhhcCccceEEEEEcCCC---------C-eEEecC
Confidence 9999976 4 8999999999999997542 25678899999999999999763 5 889999
Q ss_pred CCcEEEEecc
Q 044557 348 DCDIKVWQIS 357 (362)
Q Consensus 348 D~~i~~W~~~ 357 (362)
||+|++|++.
T Consensus 604 d~~v~iw~~~ 613 (615)
T 1pgu_A 604 DACIKRWNVV 613 (615)
T ss_dssp TSCEEEEEEC
T ss_pred CceEEEEeee
Confidence 9999999986
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=249.69 Aligned_cols=249 Identities=20% Similarity=0.305 Sum_probs=192.5
Q ss_pred eEEeecceeEEEEE-----c---CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeee
Q 044557 63 IVAVGKGAVKSLVV-----L---ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHK 134 (362)
Q Consensus 63 ~~~~~~~~v~~i~~-----~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (362)
.+..|...|.++.+ . +..|++++.|++|++|++...+..... ...
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~---------------------------~~~ 68 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF---------------------------GIP 68 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS---------------------------EEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc---------------------------ccc
Confidence 34557788999987 3 346999999999999998654311000 001
Q ss_pred eeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeC
Q 044557 135 TCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRR 213 (362)
Q Consensus 135 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~ 213 (362)
...+.+|...|.+++|+|++.+|++|+.|++|++||+++++++..+. +|...|.+++|+|++. +++++.|++|++||+
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 12345789999999999999999999999999999999998888775 7999999999999997 889999999999998
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCC----------CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEE
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDG----------SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMA 283 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~----------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~ 283 (362)
... .. ........|...|.+++|+|++ .+|++++.|++|++||... .....+.+|...|.+++
T Consensus 148 ~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~ 220 (343)
T 2xzm_R 148 LGE-CK-FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLS 220 (343)
T ss_dssp SSC-EE-EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEE
T ss_pred cCC-ce-eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEE
Confidence 632 11 1122334688899999999987 7999999999999999432 23446788999999999
Q ss_pred EeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 284 VVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 284 ~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|+++ +|++|+.|+.|++|+.... ......+ .|...|.+++|+|++ .+|+ ++.|+.|++|++..
T Consensus 221 ~s~~g~~l~sgs~dg~v~iwd~~~~-~~~~~~~-~~~~~v~~v~~sp~~---------~~la-~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 221 ISPNGKYIATGGKDKKLLIWDILNL-TYPQREF-DAGSTINQIAFNPKL---------QWVA-VGTDQGVKIFNLMT 285 (343)
T ss_dssp ECTTSSEEEEEETTCEEEEEESSCC-SSCSEEE-ECSSCEEEEEECSSS---------CEEE-EEESSCEEEEESSS
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC-cccceee-cCCCcEEEEEECCCC---------CEEE-EECCCCEEEEEeCC
Confidence 9865 8999999999999996322 1223333 355679999998764 3454 55688999999853
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=292.96 Aligned_cols=245 Identities=19% Similarity=0.334 Sum_probs=198.6
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~ 86 (362)
+..++.+|.+.|++++|+ ++++++|+.||+|++||+.+... .. .+..|...|.++.++++ .+++++.
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~--~~-------~~~~h~~~v~~~~~s~~~~~l~s~~~ 677 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK--LL-------DIKAHEDEVLCCAFSSDDSYIATCSA 677 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EE-------EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE--EE-------EeccCCCCEEEEEEecCCCEEEEEeC
Confidence 445688999999999994 78999999999999999876431 11 12245678899988765 5999999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--CCCEEEEEECCC
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK--DETLLYSVSWDR 164 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~ 164 (362)
|++|++||+.++.. ...+..|...|.+++|+| ++.++++|+.|+
T Consensus 678 d~~v~vwd~~~~~~----------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~ 723 (1249)
T 3sfz_A 678 DKKVKIWDSATGKL----------------------------------VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723 (1249)
T ss_dssp TSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred CCeEEEEECCCCce----------------------------------EEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence 99999999875431 112346888999999999 556899999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee---------------------
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL--------------------- 222 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~--------------------- 222 (362)
.|++||+++++++..+. +|...|.+++|+|++. +++++.||.|++||+.++.....+
T Consensus 724 ~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1249)
T 3sfz_A 724 FLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802 (1249)
T ss_dssp CEEEEETTSSSEEEEEC-CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBC
T ss_pred eEEEEECCCcchhheec-CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEE
Confidence 99999999999888775 7999999999999997 889999999999998654321110
Q ss_pred ------------------------------ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEee
Q 044557 223 ------------------------------VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGAL 272 (362)
Q Consensus 223 ------------------------------~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 272 (362)
......|...|.+++|+|++.++++++.|+.|++|+..+.. ....+
T Consensus 803 ~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~----~~~~~ 878 (1249)
T 3sfz_A 803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL----KVADC 878 (1249)
T ss_dssp CCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE----EEEEE
T ss_pred EEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----eeeec
Confidence 00112577889999999999999999999999999997632 35567
Q ss_pred cCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 273 RGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 273 ~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
.+|...|.+++|+++ .+++++.|+.|++|+.
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 899999999999865 8999999999999973
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=278.00 Aligned_cols=321 Identities=8% Similarity=0.085 Sum_probs=209.8
Q ss_pred cCccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEE
Q 044557 17 GHNSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVW 93 (362)
Q Consensus 17 gH~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w 93 (362)
.|...|.+|+|+ +++|++++.|++|++||+.+.. ....+ .+.+.+.++.+.++ .+++++.||+|++|
T Consensus 56 ~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~--~~~~~--------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lw 125 (902)
T 2oaj_A 56 EDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK--VLTTV--------FVPGKITSIDTDASLDWMLIGLQNGSMIVY 125 (902)
T ss_dssp SSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCS--EEEEE--------ECSSCEEEEECCTTCSEEEEEETTSCEEEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc--EEEEE--------cCCCCEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 488999999996 6789999999999999987642 11111 13457888888654 59999999999999
Q ss_pred ecCCCCCCc-----------------ccceeeeeccCCCchhhhhccccccceeeeee----eeEEe-------------
Q 044557 94 KINNQEPDH-----------------QKYTRLATLPTLGDRAIKLLMPKNHVQIRRHK----TCTWV------------- 139 (362)
Q Consensus 94 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------------- 139 (362)
|++...... ..+..+...|... ..+.....++.+ +++.+ ...+.
T Consensus 126 d~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~-~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~ 203 (902)
T 2oaj_A 126 DIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI-GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS 203 (902)
T ss_dssp ETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE-EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC
T ss_pred ECCCCccccceeccccccccccccCCCCeEEEEEccCCC-CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccc
Confidence 997654210 0111111111100 000111111222 33221 11122
Q ss_pred -----eecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEe--ee--c-------------cCcccEEEEEEc---
Q 044557 140 -----HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLES--IT--N-------------AHDDAINAVALS--- 194 (362)
Q Consensus 140 -----~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~--~-------------~h~~~v~~v~~~--- 194 (362)
+|...|.+++|+|++++|++|+.|+.|++||+++++++.. +. . .|...|.+++|+
T Consensus 204 ~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~ 283 (902)
T 2oaj_A 204 EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN 283 (902)
T ss_dssp CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS
T ss_pred cccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC
Confidence 2357899999999999999999999999999998877643 21 0 134578888884
Q ss_pred -CCC-c-EEEEeCC-----CeEEEEe------------------------------------------------------
Q 044557 195 -DDG-D-VYTGSAD-----KKIKVWR------------------------------------------------------ 212 (362)
Q Consensus 195 -~~~-~-~~s~~~d-----g~i~iw~------------------------------------------------------ 212 (362)
|++ . +++|+.| +.+++|+
T Consensus 284 ~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d 363 (902)
T 2oaj_A 284 NPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHN 363 (902)
T ss_dssp STTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBS
T ss_pred CCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCC
Confidence 433 3 4455443 1444444
Q ss_pred -----------------CCCCCCcce---eehhhhccccce----------------------------------eEEEE
Q 044557 213 -----------------RSPGNKKHS---LVDVLERHNSGI----------------------------------NALAL 238 (362)
Q Consensus 213 -----------------~~~~~~~~~---~~~~~~~h~~~v----------------------------------~~i~~ 238 (362)
+.++..... ....+..|..+| .+++|
T Consensus 364 ~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~ 443 (902)
T 2oaj_A 364 PGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLP 443 (902)
T ss_dssp CSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCC
T ss_pred ceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccc
Confidence 332211000 000111222334 44555
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCc--EEEEEeec-----CccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCc--
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGN--ILVVGALR-----GHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRN-- 307 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~-----~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~-- 307 (362)
+|++++|++|+.|++|++||+..+... ......+. +|...|.+++|+++ +||+|+.|++|+||+.....
T Consensus 444 spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 444 AEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp CSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-
T ss_pred cccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcccc
Confidence 789999999999999999998765311 00111122 78999999999875 99999999999999864321
Q ss_pred -----------------------------------------eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC
Q 044557 308 -----------------------------------------YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346 (362)
Q Consensus 308 -----------------------------------------~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s 346 (362)
+.++..+.+|.+.|++++|+|+ + +||+|+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd---------G-~lAsgs 593 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI---------G-FVGIAY 593 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT---------S-EEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC---------c-EEEEEe
Confidence 2457889999999999999875 3 699999
Q ss_pred CCCcEEEEecccC
Q 044557 347 LDCDIKVWQISFP 359 (362)
Q Consensus 347 ~D~~i~~W~~~~~ 359 (362)
.|++|+|||+..+
T Consensus 594 ~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 594 AAGSLMLIDRRGP 606 (902)
T ss_dssp TTSEEEEEETTTT
T ss_pred CCCcEEEEECCCC
Confidence 9999999998765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=277.36 Aligned_cols=289 Identities=20% Similarity=0.352 Sum_probs=231.5
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
.+..++|++|.+.|++++|+ +++|++|+.||+|++||+.+.. .. ..+..+.+.+.++.+.++ .|+++
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~--~~-------~~~~~~~~~v~~~~~s~~~~~l~~~ 73 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--EV-------RSIQVTETPVRAGKFIARKNWIIVG 73 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EE-------EEEECCSSCEEEEEEEGGGTEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc--eE-------EEEecCCCcEEEEEEeCCCCEEEEE
Confidence 45678899999999999995 7899999999999999986532 11 122345678889988765 59999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.||.|++|++..+.. ...+..|.+.|.+++|+|++++|++++.|+
T Consensus 74 ~~dg~i~vw~~~~~~~----------------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 119 (814)
T 3mkq_A 74 SDDFRIRVFNYNTGEK----------------------------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119 (814)
T ss_dssp ETTSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred eCCCeEEEEECCCCcE----------------------------------EEEEecCCCCEEEEEEeCCCCEEEEEcCCC
Confidence 9999999999875431 112345888999999999999999999999
Q ss_pred cEEEEECCCc-eEEEeeeccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec-
Q 044557 165 TIKIWRTSDF-KCLESITNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC- 240 (362)
Q Consensus 165 ~i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~- 240 (362)
.|++||++++ .....+ ..|...|.+++|+| ++. +++++.||.|++||+.++.....+. ..+..++.+++|+|
T Consensus 120 ~i~vw~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~ 195 (814)
T 3mkq_A 120 TVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT---TGQERGVNYVDYYPL 195 (814)
T ss_dssp EEEEEEGGGTSEEEEEE-ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE---CCCTTCCCEEEECCS
T ss_pred EEEEEECCCCceEEEEE-cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe---cCCCCCEEEEEEEEC
Confidence 9999999887 444444 47999999999999 665 8899999999999997765433321 23448899999999
Q ss_pred -CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 241 -DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 241 -~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
++.+|++++.|+.|++||..+.. .+..+.+|...|.+++++++ ++++++.||.|++|+.. ....+..+..|
T Consensus 196 ~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~--~~~~~~~~~~~ 269 (814)
T 3mkq_A 196 PDKPYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS--TYKVEKTLNVG 269 (814)
T ss_dssp TTCCEEEEECTTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT--TCSEEEEECCS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCcEEEEeecC
Confidence 99999999999999999987533 34567789999999999865 89999999999999964 35667889999
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...|++++|+|++.. .+++++ .|+.+.+|++..
T Consensus 270 ~~~v~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~ 302 (814)
T 3mkq_A 270 LERSWCIATHPTGRK-------NYIASG-FDNGFTVLSLGN 302 (814)
T ss_dssp SSSEEEEEECTTCGG-------GEEEEE-ETTEEEEEECSC
T ss_pred CCcEEEEEEccCCCc-------eEEEEE-eCCCEEEEEcCC
Confidence 999999999876532 235554 577788898753
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=255.96 Aligned_cols=235 Identities=27% Similarity=0.513 Sum_probs=186.7
Q ss_pred ceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecC
Q 044557 21 YVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 21 ~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~ 96 (362)
.|.+++|+ +++|++|+.|++|++||+.+.. .. ..+..|...+.++.+.++ .|++++.|++|++||+.
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~--~~-------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRK--IV-------MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EE-------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EE-------EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC
Confidence 48999994 7899999999999999987532 11 122345678888988754 69999999999999986
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEECCCcEEEEECCCce
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFK 175 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~ 175 (362)
.+... ....+...+.+++++| ++++|++|+.|+.|++||+++++
T Consensus 196 ~~~~~-----------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~ 240 (393)
T 1erj_A 196 TGQCS-----------------------------------LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240 (393)
T ss_dssp TTEEE-----------------------------------EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC
T ss_pred CCeeE-----------------------------------EEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 53210 0113456789999999 89999999999999999999988
Q ss_pred EEEeee------ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc--------ceeehhhhccccceeEEEEec
Q 044557 176 CLESIT------NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK--------HSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 176 ~~~~~~------~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~--------~~~~~~~~~h~~~v~~i~~s~ 240 (362)
.+..+. .+|...|.+++|+|++. +++++.||+|++||+.+.... ......+.+|...|.+++|+|
T Consensus 241 ~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 320 (393)
T 1erj_A 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 320 (393)
T ss_dssp EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG
T ss_pred EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC
Confidence 766552 36889999999999997 889999999999998764321 112234567899999999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--------CeEEEeeCCCcEEEeeC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--------DLVCSGSADKTIRIWRG 303 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~s~s~D~~i~~W~~ 303 (362)
++.+|++|+.|+.|++||..++. .+..+.+|...|.++++.+ ++++|||.|++|++|+.
T Consensus 321 ~~~~l~sgs~D~~v~iwd~~~~~----~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 321 NDEYILSGSKDRGVLFWDKKSGN----PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp GGCEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCe----EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 99999999999999999998654 3456789999999999864 37999999999999984
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=259.16 Aligned_cols=289 Identities=13% Similarity=0.191 Sum_probs=219.2
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVW 93 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w 93 (362)
|.+.|++++|+ +++|++|+.||.|++||... .... .+..+...+.++.+.++ .+++++.|+.|++|
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~---~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG---ALLN-------VLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETTS---CEEE-------EECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC---Ceee-------eccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 78899999995 78999999999999999322 1111 12235677888888754 59999999999999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 173 (362)
++..+... ..+........ .+ ...........+.+++|+|++ .+++++.|+.|++||+++
T Consensus 177 d~~~~~~~-------~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~ 236 (425)
T 1r5m_A 177 NVISGTVM-------QHFELKETGGS---------SI---NAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITE 236 (425)
T ss_dssp ETTTTEEE-------EEECCC---------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTC
T ss_pred ECCCCcEE-------EEeeccccCcc---------ce---eeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCC
Confidence 99754321 11100000000 00 000001122347888999875 588899999999999999
Q ss_pred ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC
Q 044557 174 FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR 252 (362)
Q Consensus 174 ~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~ 252 (362)
++.+..+. .|...|.+++|+|++. +++++.||.|++||+.++.... .+..|..+|.+++|+|++ ++++++.|+
T Consensus 237 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~~-~l~~~~~d~ 310 (425)
T 1r5m_A 237 KTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN----CFYGHSQSIVSASWVGDD-KVISCSMDG 310 (425)
T ss_dssp SSCSEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE----EECCCSSCEEEEEEETTT-EEEEEETTS
T ss_pred Cceeeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce----EecCCCccEEEEEECCCC-EEEEEeCCC
Confidence 88777664 7899999999999986 8899999999999998765332 345688999999999999 999999999
Q ss_pred cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCcee--------------------e
Q 044557 253 SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYT--------------------C 310 (362)
Q Consensus 253 ~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~--------------------~ 310 (362)
.|++||+.+.. .+..+..|...|.+++++++ ++++++.|+.|++|+... .. +
T Consensus 311 ~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 384 (425)
T 1r5m_A 311 SVRLWSLKQNT----LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK--LNSKSRSLYGNRDGILNPLPIPL 384 (425)
T ss_dssp EEEEEETTTTE----EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH--HHC--------------CEECCE
T ss_pred cEEEEECCCCc----EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC--CccceeeeecccccccCcccchh
Confidence 99999997533 34556788999999999864 899999999999999632 23 6
Q ss_pred eeEecCCCC--cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 311 LAVLEGHRG--PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 311 ~~~l~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+..+.+|.. .|.+++|+|++ .+|++|+.||.|++|+++
T Consensus 385 ~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 385 YASYQSSQDNDYIFDLSWNCAG---------NKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECCTTCCCCEEEEEECTTS---------SEEEEEESSSCCEEEECC
T ss_pred hhhhcCcccCCceEEEEccCCC---------ceEEEEecCceEEEEeec
Confidence 788999977 99999998664 468999999999999985
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=247.12 Aligned_cols=243 Identities=23% Similarity=0.403 Sum_probs=196.6
Q ss_pred EEeecceeEEEEEcC---ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 64 VAVGKGAVKSLVVLA---DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 64 ~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
+..|.+.|.++.+.+ +.|++++.|++|++|++....... ......+.+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~-----------------------------~~~~~~~~~ 63 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF-----------------------------GVPVRSFKG 63 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE-----------------------------EEEEEEEEC
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc-----------------------------cccceEEeC
Confidence 345778899998875 459999999999999985322100 011224457
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
|...|.+++|+|++++|++|+.|++|++||+++++++..+. +|...|.+++|+|++. +++++.|++|++||+...
T Consensus 64 h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--- 139 (319)
T 3frx_A 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--- 139 (319)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC---
T ss_pred CcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Confidence 99999999999999999999999999999999999888775 7999999999999987 889999999999998632
Q ss_pred ceeehhhhccccceeEEEEecC------CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEE
Q 044557 220 HSLVDVLERHNSGINALALSCD------GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCS 291 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s 291 (362)
....+.+|...|.++.|+|. +..|++++.|++|++||+.... ....+.+|...|.+++++++ ++++
T Consensus 140 --~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 140 --CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ----IEADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp --EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE----EEEEECCCCSCEEEEEECTTSSEEEE
T ss_pred --eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch----hheeecCCCCcEEEEEEcCCCCEEEE
Confidence 23345679999999999984 4589999999999999997532 34567899999999999865 8999
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++.|++|++|+... .+++..+.+| ..|.+++|+|++ .+|++++ +..+++|++..
T Consensus 214 ~~~dg~i~iwd~~~--~~~~~~~~~~-~~v~~~~~sp~~---------~~la~~~-~~~i~v~~~~~ 267 (319)
T 3frx_A 214 AGKDGEIMLWNLAA--KKAMYTLSAQ-DEVFSLAFSPNR---------YWLAAAT-ATGIKVFSLDP 267 (319)
T ss_dssp EETTCEEEEEETTT--TEEEEEEECC-SCEEEEEECSSS---------SEEEEEE-TTEEEEEEETT
T ss_pred EeCCCeEEEEECCC--CcEEEEecCC-CcEEEEEEcCCC---------CEEEEEc-CCCcEEEEeCc
Confidence 99999999999643 4567777654 689999998764 4577665 45699999853
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-33 Score=244.28 Aligned_cols=245 Identities=23% Similarity=0.425 Sum_probs=196.4
Q ss_pred EeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec
Q 044557 65 AVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV 142 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 142 (362)
..|...|.++.+.++ .|++++.|+.|++|++..+.. ...+..|.
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~----------------------------------~~~~~~h~ 65 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----------------------------------EKTISGHK 65 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----------------------------------EEEECCCS
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc----------------------------------chhhccCC
Confidence 346778999988765 599999999999999865321 01223588
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcce
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
..|.+++|+|++++|++|+.|+.|++||+++++++..+. .|...|.+++|+|++. +++++.||.|++||+.++..
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--- 141 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--- 141 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE---
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE---
Confidence 899999999999999999999999999999999888775 7999999999999987 88999999999999987643
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEE
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIR 299 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~ 299 (362)
...+..|..+|.+++|+|++.+|++++.|+.|++||+.+... .......+...+.+++++++ ++++++.|+.|+
T Consensus 142 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
T 4ery_A 142 -LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217 (312)
T ss_dssp -EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred -EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 334567889999999999999999999999999999986432 11223456677888999764 899999999999
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+|+.. ...++..+.+|...+..+.... ..+++.+|++|+.||.|++||+...
T Consensus 218 iwd~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 218 LWDYS--KGKCLKTYTGHKNEKYCIFANF------SVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp EEETT--TTEEEEEECSSCCSSSCCCEEE------ECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EEECC--CCcEEEEEEecCCceEEEEEEE------EeCCCcEEEEECCCCEEEEEECCCc
Confidence 99964 3566788888887654332211 1233568999999999999998643
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=277.71 Aligned_cols=335 Identities=10% Similarity=0.097 Sum_probs=220.0
Q ss_pred eecccCccceeeeEecC---cEEEEecCCCeEEEeecCCCCcccceeeeccc-----------eeEEeecceeEEEEEcC
Q 044557 13 TTLKGHNSYVSSLALAG---KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNN-----------NIVAVGKGAVKSLVVLA 78 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~~---~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~i~~~~ 78 (362)
.++++|.+.|.+|+|++ ..+++|+.||+| +||+.+... ...+.... .....|...|.++.+.+
T Consensus 145 ~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 145 FFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp TCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred cccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 45689999999999964 589999999999 999876431 11111000 00011235688998876
Q ss_pred c--eeEEEecCCcEEEEecCCCCCCcc------------------------cceeeeeccCCC-chhhhhccc-cc----
Q 044557 79 D--KLFSAHQDHKIRVWKINNQEPDHQ------------------------KYTRLATLPTLG-DRAIKLLMP-KN---- 126 (362)
Q Consensus 79 ~--~l~s~~~dg~i~~w~~~~~~~~~~------------------------~~~~~~~~~~~~-~~~~~~~~~-~~---- 126 (362)
+ .|++++.|++|++||++.++.... .+..+...+... +....+... ..
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence 5 599999999999999976543110 011111111100 000000000 00
Q ss_pred --cceeeee---------------------eeeEEe--eecCceeEEEEec----------CCCEEEEEECCCcEEEEEC
Q 044557 127 --HVQIRRH---------------------KTCTWV--HHVDAVSALALTK----------DETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 127 --~~~~~~~---------------------~~~~~~--~h~~~v~~~~~~~----------~~~~l~s~s~d~~i~iwd~ 171 (362)
...++.. +..... .+.+.+..+.+.+ +...+++++.|+.|++|++
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence 1111110 001111 2456777777755 3447889999999999998
Q ss_pred CCceEEEe-------ee---------------------------------ccCcccEEEEEEcCCCc-EEEEeCCCeEEE
Q 044557 172 SDFKCLES-------IT---------------------------------NAHDDAINAVALSDDGD-VYTGSADKKIKV 210 (362)
Q Consensus 172 ~~~~~~~~-------~~---------------------------------~~h~~~v~~v~~~~~~~-~~s~~~dg~i~i 210 (362)
.++..... +. .+|...+.+++|+|++. +++|+.||+|++
T Consensus 382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrl 461 (902)
T 2oaj_A 382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI 461 (902)
T ss_dssp TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEE
T ss_pred CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEE
Confidence 76643221 10 12333344455678786 889999999999
Q ss_pred EeCCCCCCcce--eehhh-----hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC-------------------
Q 044557 211 WRRSPGNKKHS--LVDVL-----ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG------------------- 264 (362)
Q Consensus 211 w~~~~~~~~~~--~~~~~-----~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~------------------- 264 (362)
||+.++..... +...+ .+|...|.+++|+|||++|++|+.||+|++|++.....
T Consensus 462 Wd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (902)
T 2oaj_A 462 YDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRF 541 (902)
T ss_dssp EESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSC
T ss_pred EECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeec
Confidence 99987642110 11011 26889999999999999999999999999999875421
Q ss_pred ----------------------cEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCcee---eeeEec-CC
Q 044557 265 ----------------------NILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYT---CLAVLE-GH 317 (362)
Q Consensus 265 ----------------------~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~---~~~~l~-~h 317 (362)
.+..+..+.+|.+.|.+++|+++ +||+|+.|++|++||....... .+..+. +|
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 542 SLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp CGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred cccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence 01235667889999999999865 9999999999999996443221 112343 99
Q ss_pred CCcEEEEEee-----ecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 318 RGPVKCLAAA-----IDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 318 ~~~v~~~~~~-----~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.+.|++++|+ |++ +.+.+|++|+.|++|++||+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg------~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDG------YSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp CCCEEEEEEEEEECTTSS------SEEEEEEEEETTSEEEEEEE
T ss_pred ccceEEEEEEEEecCCCC------CcceEEEEEecCCcEEEEEE
Confidence 9999999999 553 12468999999999999998
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=253.28 Aligned_cols=306 Identities=21% Similarity=0.349 Sum_probs=220.6
Q ss_pred ccceeeecccCccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC----ceeE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA----DKLF 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~----~~l~ 82 (362)
+.+++.++.+|.+.|.++.+. +.++++|+.||+|++||+.+... .. .+..|...+.++.+.. ..++
T Consensus 151 ~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~-------~~~~h~~~v~~l~~~~~~~~~~l~ 221 (464)
T 3v7d_B 151 NKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCC--TH-------VFEGHNSTVRCLDIVEYKNIKYIV 221 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEE--EE-------EECCCSSCEEEEEEEESSSCEEEE
T ss_pred CCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcE--EE-------EECCCCCccEEEEEecCCCCCEEE
Confidence 456888999999999999996 44999999999999999875421 11 1223567788887752 4599
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|++|++||+............ .........+.... .......+|...+.++ ++++++|++|+.
T Consensus 222 s~s~d~~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 222 TGSRDNTLHVWKLPKESSVPDHGEE-------HDYPLVFHTPEENP----YFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp EEETTSCEEEEECCCCCCC-------------CCSSEEESCGGGCT----TEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred EEcCCCcEEEeeCCCCccccccccc-------CCcceEeeccCCCe----EEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 9999999999999765432110000 00000000000000 0112334677777776 677899999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
|+.|++||+++++++..+. +|...|.+++|+|++. +++++.||.|++||+.++. ....+..|...|.+++|+
T Consensus 289 d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~-- 361 (464)
T 3v7d_B 289 DNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLS-- 361 (464)
T ss_dssp TSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEC--
T ss_pred CCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCcEEEEEEc--
Confidence 9999999999999888775 7999999999999986 8899999999999998764 344556799999999997
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeE-ecCCCCc
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAV-LEGHRGP 320 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~-l~~h~~~ 320 (362)
+.+|++++.||.|++||+.+.... ......+...+.++...+.++++++ |+.|++|+... .+++.. +.+|...
T Consensus 362 ~~~l~s~s~dg~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~--g~~~~~~~~~~~~~ 435 (464)
T 3v7d_B 362 DKFLVSAAADGSIRGWDANDYSRK---FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS--GKLVHANILKDADQ 435 (464)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEE---EEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT--CCEEESCTTTTCSE
T ss_pred CCEEEEEeCCCcEEEEECCCCcee---eeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC--CcEEehhhccCCCc
Confidence 589999999999999999864421 1111222233344445566888888 99999999644 455654 6789999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|++++|+. ..++++++.||.+.+|-+++
T Consensus 436 v~~v~~~~----------~~l~~~~~~~g~~~i~~ldf 463 (464)
T 3v7d_B 436 IWSVNFKG----------KTLVAAVEKDGQSFLEILDF 463 (464)
T ss_dssp EEEEEEET----------TEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEecC----------CEEEEEEEeCCeEEEEEeec
Confidence 99999952 25788888888877665543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=244.81 Aligned_cols=209 Identities=21% Similarity=0.300 Sum_probs=171.6
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCC--ceEEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEeC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD--FKCLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWRR 213 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~~ 213 (362)
.+|.+.|.+++|+|++++||+|+.|++|+|||+.. .+++..+. +|..+|.+++|+++ +. +++++.||+|++||+
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 46999999999999999999999999999999974 34555554 89999999999863 54 889999999999999
Q ss_pred CCCCCcceeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC----
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---- 287 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---- 287 (362)
.++... ....+..|..+|.+++|+|+ +.+|++++.|++|++||++...... ...+.+|...|.+++|+++
T Consensus 85 ~~~~~~--~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~--~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 85 ENGRWS--QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp SSSCBC--CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC--CEEEECCSSCEEEEEECCCC---
T ss_pred CCCceE--EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee--eeeeecccCccceEeecCCcccc
Confidence 875321 22334578999999999997 8999999999999999997643211 1245789999999999763
Q ss_pred -----------eEEEeeCCCcEEEeeCCCCc--eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 288 -----------LVCSGSADKTIRIWRGIDRN--YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 288 -----------~~~s~s~D~~i~~W~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
+|++|+.|++|++|+..... ..+...+.+|...|.+++|+|++. .+.+|+|||.|++|+||
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~------~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL------LRSYMASVSQDRTCIIW 234 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS------SSEEEEEEETTSCEEEE
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC------CceEEEEEECCCcEEEE
Confidence 89999999999999964322 346678999999999999988631 13679999999999999
Q ss_pred eccc
Q 044557 355 QISF 358 (362)
Q Consensus 355 ~~~~ 358 (362)
|+..
T Consensus 235 d~~~ 238 (297)
T 2pm7_B 235 TQDN 238 (297)
T ss_dssp EESS
T ss_pred EeCC
Confidence 9864
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=254.88 Aligned_cols=318 Identities=14% Similarity=0.239 Sum_probs=208.3
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCCCccc---ceeeeccceeEEeec------------ceeEEEEEcCc
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSEL---DQEFLSNNNIVAVGK------------GAVKSLVVLAD 79 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~---~~~~~~~~~~~~~~~------------~~v~~i~~~~~ 79 (362)
.|.+.|++++|+ +++||+|+.||.|++||+....... ..++. ....+..|. ..|.++.+.++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYN-VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEE-EEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccccee-EecccccccccccccccccccCceEEEEEcCC
Confidence 378999999995 7899999999999999987543100 00000 011222344 66888888764
Q ss_pred ----eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCch------hhhhcccc---ccceeeeeeeeEE-eeecCce
Q 044557 80 ----KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDR------AIKLLMPK---NHVQIRRHKTCTW-VHHVDAV 145 (362)
Q Consensus 80 ----~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~~~-~~h~~~v 145 (362)
.+++++.|++|++|++.......... .+....+. ...+..+. ....+.......+ .+|...|
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGY----NLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECC----SCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred CCcceEEEeCCCCeEEEEecccccCCccee----cccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 49999999999999986432110000 00000000 00000000 0000001111122 3689999
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCC-ceEEEee------eccCcccEEEEEEcCCC-c-EEEEeCCCeEEEEeCCCC
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSD-FKCLESI------TNAHDDAINAVALSDDG-D-VYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~------~~~h~~~v~~v~~~~~~-~-~~s~~~dg~i~iw~~~~~ 216 (362)
.+++|+|++++|++| .|+.|++||++. .+.+..+ ...|...|.+++|+|++ . +++++.||.|++||+.++
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 999999999999998 799999999984 4444432 34788999999999997 5 889999999999999876
Q ss_pred CCcceeehhhhcccc------------ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce------
Q 044557 217 NKKHSLVDVLERHNS------------GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS------ 278 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~------------~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~------ 278 (362)
.........+..|.. +|.+++|+|+|++|++++. +.|++||+..... .+..+.+|...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~---~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR---PVETYQVHEYLRSKLCS 335 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS---CSCCEESCGGGTTTHHH
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc---ccceeeccccccccccc
Confidence 542111223344544 8999999999999999999 9999999976222 22345566532
Q ss_pred ---------eEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecC-------------------------------
Q 044557 279 ---------ILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEG------------------------------- 316 (362)
Q Consensus 279 ---------v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~------------------------------- 316 (362)
+..++|+++ ++++++.|+.|++|+...... + .+.+
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD--I-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDS 412 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE--E-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc--e-eeeecccccccccccCCccccccCCcccccccccc
Confidence 223777754 899999999999999754322 1 2332
Q ss_pred --CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 317 --HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 317 --h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+...|..++|+|++ .+||+|+.|+ +.+|.-.
T Consensus 413 ~~~~~~i~~~~~~p~~---------~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 413 LDFNKKILHTAWHPKE---------NIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCTTSCCCEEEECSSS---------SEEEEECSSC-EEEEECC
T ss_pred cccCCceeEEEECCCC---------CEEEEEecce-eeeeccc
Confidence 34567888887764 4688888765 7788653
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=268.72 Aligned_cols=231 Identities=14% Similarity=0.087 Sum_probs=174.8
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC------
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD------ 153 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------ 153 (362)
.+++++.|++|++|++..++... .....+.+|.+.|.+++|+|+
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~------------------------------~~~~~l~~~~~~V~~v~wsp~~~~~~~ 224 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHC------------------------------VKVQTIVHSFGEVWDLKWHEGCHAPHL 224 (524)
T ss_dssp -------CEEEEEEEEETTTCCE------------------------------EEEEEEEECCCSEEEEEECSSCCCSSS
T ss_pred hhccCCCCceEEEEEccCCCCCc------------------------------eEEEEEEecCCcEEEEEECCCCCCCCC
Confidence 36789999999999986543110 001123457788999999996
Q ss_pred CCEEEEEECCCcEEEEECCCceEE-----------EeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCccee
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCL-----------ESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~-----------~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
+.+||+++.|++|+|||+..++.. ..+ .+|...|.+++|++++.|++|+.||+|++||+.++...
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~--- 300 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVP--- 300 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSC---
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCc---
Confidence 579999999999999999765321 123 46889999999998888999999999999999865322
Q ss_pred ehhhhccccceeEE--EEecCC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccc--eeEEEEEeCC--eEEEeeCC
Q 044557 223 VDVLERHNSGINAL--ALSCDG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK--SILCMAVVSD--LVCSGSAD 295 (362)
Q Consensus 223 ~~~~~~h~~~v~~i--~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~--~~~s~s~D 295 (362)
...+..|..+|.+| +|+|+| .+|++||.|++|++||+++..... .+.+|.. .|.+++|+++ .+++++.|
T Consensus 301 ~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~----~~~~~~~~~~v~~v~fsp~~~~l~s~~~d 376 (524)
T 2j04_B 301 SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK----TTVSRFRGSNLVPVVYCPQIYSYIYSDGA 376 (524)
T ss_dssp SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC----EEEEECSCCSCCCEEEETTTTEEEEECSS
T ss_pred eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc----ccccccccCcccceEeCCCcCeEEEeCCC
Confidence 22356799999999 568888 899999999999999997643221 2334543 4788999875 79999999
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
++|++|+.. ...++.++.+|.+.|++++|+|++ .+|+|||.|++|++||+...
T Consensus 377 ~tv~lwd~~--~~~~~~~l~gH~~~V~sva~Sp~g---------~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 377 SSLRAVPSR--AAFAVHPLVSRETTITAIGVSRLH---------PMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp SEEEEEETT--CTTCCEEEEECSSCEEEEECCSSC---------CBCEEEETTTEEECCBSCSS
T ss_pred CcEEEEECc--ccccceeeecCCCceEEEEeCCCC---------CeEEEEECCCEEEEEechHh
Confidence 999999964 345567888999999999998764 46899999999999998543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=245.49 Aligned_cols=291 Identities=14% Similarity=0.218 Sum_probs=221.2
Q ss_pred eccceeeecccCccceeeeEec-----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA-----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-- 79 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~-----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 79 (362)
.+.+.+..+++|.+.|++++|+ |++|++|+.||+|++||+.+...... ..+..|...+.++.+.++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~ 99 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-------KAQQMHTGPVLDVCWSDDGS 99 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------EEEEECSSCEEEEEECTTSS
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------EEeccccCCEEEEEECcCCC
Confidence 4556788899999999999995 47999999999999999875221111 223446778999988765
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE--ecCCCEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL--TKDETLL 157 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l 157 (362)
.|++++.||.|++||++.... .....|...|.+++| +|++++|
T Consensus 100 ~l~s~~~dg~v~iwd~~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~~~~l 144 (368)
T 3mmy_A 100 KVFTASCDKTAKMWDLSSNQA-----------------------------------IQIAQHDAPVKTIHWIKAPNYSCV 144 (368)
T ss_dssp EEEEEETTSEEEEEETTTTEE-----------------------------------EEEEECSSCEEEEEEEECSSCEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCc-----------------------------------eeeccccCceEEEEEEeCCCCCEE
Confidence 599999999999999875321 012358889999999 8999999
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEE
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~ 237 (362)
++++.|+.|++||+++++++..+. .+ ..+.++.+.++ .+++++.|+.+++|++........... ..+...+.++.
T Consensus 145 ~~~~~dg~i~vwd~~~~~~~~~~~-~~-~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 219 (368)
T 3mmy_A 145 MTGSWDKTLKFWDTRSSNPMMVLQ-LP-ERCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIE--SPLKHQHRCVA 219 (368)
T ss_dssp EEEETTSEEEEECSSCSSCSEEEE-CS-SCEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECC--CSCSSCEEEEE
T ss_pred EEccCCCcEEEEECCCCcEEEEEe-cC-CCceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhcc--ccccCCCceEE
Confidence 999999999999999988877765 33 35666666643 578888999999999976543222222 22344566677
Q ss_pred EecCCCE----EEEEcCCCcEEEEeccCCCCcEEEEEeecCccc------------eeEEEEEeCC--eEEEeeCCCcEE
Q 044557 238 LSCDGSV----LYSGACDRSIIVWEKEEDDGNILVVGALRGHTK------------SILCMAVVSD--LVCSGSADKTIR 299 (362)
Q Consensus 238 ~s~~~~~----l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~------------~v~~~~~~~~--~~~s~s~D~~i~ 299 (362)
+.++... +++++.|+.|++|++...... .....+.+|.. .|.+++++++ ++++++.|+.|+
T Consensus 220 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~ 298 (368)
T 3mmy_A 220 IFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS 298 (368)
T ss_dssp EEECTTSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEE
T ss_pred EcccCCCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEE
Confidence 7666554 999999999999999764320 11223455655 6999999865 899999999999
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+|+.. ...++..+.+|...|.+++|+|++ .+|++||.|+..+.|++
T Consensus 299 iwd~~--~~~~~~~~~~~~~~v~~~~~s~~g---------~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 299 FWDKD--ARTKLKTSEQLDQPISACCFNHNG---------NIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEETT--TTEEEEECCCCSSCEEEEEECTTS---------SCEEEEECCCSTTCGGG
T ss_pred EEECC--CCcEEEEecCCCCCceEEEECCCC---------CeEEEEecccccccccc
Confidence 99964 456788999999999999998765 45889988886665554
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=260.93 Aligned_cols=274 Identities=19% Similarity=0.249 Sum_probs=209.8
Q ss_pred ceeeecccCccc-eeeeEecC----cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 10 HCLTTLKGHNSY-VSSLALAG----KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 10 ~~~~tl~gH~~~-V~~l~~~~----~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
++...|.+|.+. |.+++|+. ++|++|+.||+|++||+.+........ ......+..+...+.++.+.++ .++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE-VNVKSEFQVLAGPISDISWDFEGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE-EEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccc-ccccchhhcccccEEEEEEeCCCCEEE
Confidence 678889999999 99999954 799999999999999985421000000 0001122335678889988765 588
Q ss_pred EEecC----CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EE
Q 044557 83 SAHQD----HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LL 157 (362)
Q Consensus 83 s~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 157 (362)
+++.+ +.|.+|+.. . . ...+..|...|.+++|+|+++ +|
T Consensus 133 ~~~~~~~~~~~v~~~d~~--~-------~---------------------------~~~~~~~~~~v~~~~~~~~~~~~l 176 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWDSG--N-------S---------------------------LGEVSGHSQRINACHLKQSRPMRS 176 (615)
T ss_dssp EEECCSSCSEEEEETTTC--C-------E---------------------------EEECCSCSSCEEEEEECSSSSCEE
T ss_pred EeccCCCCccEEEEEECC--C-------c---------------------------ceeeecCCccEEEEEECCCCCcEE
Confidence 88877 688888732 1 0 011235788999999999998 89
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcc---cEEEEEEcCC-Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccc
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDD---AINAVALSDD-GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG 232 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~---~v~~v~~~~~-~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~ 232 (362)
++++.|+.|++||+.+++.+..+. .|.. .|.+++|+|+ +. +++++.||.|++||+.++.....+......|..+
T Consensus 177 ~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 255 (615)
T 1pgu_A 177 MTVGDDGSVVFYQGPPFKFSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 255 (615)
T ss_dssp EEEETTTEEEEEETTTBEEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred EEEeCCCcEEEEeCCCcceeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCc
Confidence 999999999999999999888775 6888 9999999999 86 8889999999999998765332221101178999
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCc----cceeEEEEE-eCCeEEEeeCCCcEEEeeCCCCc
Q 044557 233 INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGH----TKSILCMAV-VSDLVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h----~~~v~~~~~-~~~~~~s~s~D~~i~~W~~~~~~ 307 (362)
|.+++|+ ++.+|++++.|+.|++||+.+.+ .+..+..+ ...+.++.+ .++++++++.|+.|++|+.. .
T Consensus 256 v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~--~ 328 (615)
T 1pgu_A 256 IFALSWL-DSQKFATVGADATIRVWDVTTSK----CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG--H 328 (615)
T ss_dssp EEEEEES-SSSEEEEEETTSEEEEEETTTTE----EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT--E
T ss_pred eEEEEEc-CCCEEEEEcCCCcEEEEECCCCc----EEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC--C
Confidence 9999999 99999999999999999997643 23334444 356667766 56699999999999999953 4
Q ss_pred eeeeeEecCCCCcEEEEEeeec
Q 044557 308 YTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
..++..+.+|...|.+++| |+
T Consensus 329 ~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 329 DEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp EEEEEEECCCSSCEEEEET-TT
T ss_pred CcEEEEEeCCCCCEEEEEe-cC
Confidence 6778889999999999988 54
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=248.42 Aligned_cols=252 Identities=13% Similarity=0.180 Sum_probs=184.0
Q ss_pred eecccCccceeeeEecCcEEEEe-----------cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce-
Q 044557 13 TTLKGHNSYVSSLALAGKFLYTG-----------SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK- 80 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~~~~l~t~-----------s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~- 80 (362)
.+|.+|...|.+++++++.+++| +.|+++|+|++....................+...+.++.+++|.
T Consensus 67 ~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~ 146 (365)
T 4h5i_A 67 FALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT 146 (365)
T ss_dssp EECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS
T ss_pred EEccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC
Confidence 35889999999999988877765 457889999876543221111000000001123346778888764
Q ss_pred -eE--EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 81 -LF--SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 81 -l~--s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
++ +++.|++|++||++..... .. ..|...|.+++|+||+++|
T Consensus 147 ~la~as~~~d~~i~iwd~~~~~~~----------------------------------~~-~~~~~~V~~v~fspdg~~l 191 (365)
T 4h5i_A 147 VAAIASSKVPAIMRIIDPSDLTEK----------------------------------FE-IETRGEVKDLHFSTDGKVV 191 (365)
T ss_dssp CEEEEESCSSCEEEEEETTTTEEE----------------------------------EE-EECSSCCCEEEECTTSSEE
T ss_pred EEEEEECCCCCEEEEeECCCCcEE----------------------------------EE-eCCCCceEEEEEccCCceE
Confidence 44 4557999999998653210 01 2466789999999999999
Q ss_pred EEEECCCcEEEEECCCceEE-EeeeccCcccEEEEEEcCCCc-EEEEeCCC----eEEEEeCCCCCCcceeehhhhcccc
Q 044557 158 YSVSWDRTIKIWRTSDFKCL-ESITNAHDDAINAVALSDDGD-VYTGSADK----KIKVWRRSPGNKKHSLVDVLERHNS 231 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~-~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg----~i~iw~~~~~~~~~~~~~~~~~h~~ 231 (362)
++++.| .+++|+..+++.+ ......|...|.+++|+|++. +++++.|+ .+++|+.............+..|..
T Consensus 192 ~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 270 (365)
T 4h5i_A 192 AYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK 270 (365)
T ss_dssp EEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS
T ss_pred Eeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCC
Confidence 999855 5666666665543 344456888999999999997 77888776 6888987665432222345567889
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe-ecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
+|++++|+|||++|++|+.|++|++||+++.+ .+.. +.+|...|++++|+++ +|+|||.|++||||++.
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~----~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNSIALVKLKDLS----MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTE----EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CeEeEEECCCCCceEEEcCCCEEEEEECCCCc----EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 99999999999999999999999999997643 2333 5799999999999876 89999999999999963
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=282.57 Aligned_cols=202 Identities=22% Similarity=0.327 Sum_probs=169.5
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~ 218 (362)
.|...+.+++|+|+++++++++.|+.|++||+.++..+..+. +|...|.+++|+|++. +++++.||.|++|++.....
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccce
Confidence 578899999999999999999999999999999998887775 7999999999999997 88999999999998532000
Q ss_pred ---------------------------------------------------------------------------cceee
Q 044557 219 ---------------------------------------------------------------------------KHSLV 223 (362)
Q Consensus 219 ---------------------------------------------------------------------------~~~~~ 223 (362)
.....
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~ 996 (1249)
T 3sfz_A 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 996 (1249)
T ss_dssp CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE
T ss_pred eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee
Confidence 00111
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEee
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWR 302 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~ 302 (362)
..+..|..+|++++|+|+|++|++++.|+.|++||+.++. .....+|...|.++.+.++ .+++++.|++|++|+
T Consensus 997 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-----YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE-----EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 2234688899999999999999999999999999997642 1245689999999999865 899999999999999
Q ss_pred CCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 303 GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 303 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
... ..++..+.+|...|.+++|+|++ .+|++|+.|++|++||+..
T Consensus 1072 ~~~--~~~~~~~~~~~~~v~~~~~s~d~---------~~l~s~s~d~~v~iwd~~~ 1116 (1249)
T 3sfz_A 1072 VIT--GRIERDFTCHQGTVLSCAISSDA---------TKFSSTSADKTAKIWSFDL 1116 (1249)
T ss_dssp TTT--TCCCEEEECCSSCCCCEEECSSS---------SSCEEECCSSCCCEECSSS
T ss_pred CCC--CceeEEEcccCCcEEEEEECCCC---------CEEEEEcCCCcEEEEECCC
Confidence 643 45678899999999999998765 3589999999999999853
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=237.26 Aligned_cols=280 Identities=16% Similarity=0.244 Sum_probs=214.7
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVW 93 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w 93 (362)
|.++|.+++++ |++++++..++.+.+|+..... . ......|...+.++.+.++ .+++++ ||.|++|
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw 77 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-----R----QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVW 77 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-----E----EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-----c----cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEE
Confidence 56788999984 7889888888877777543211 0 0111235678888988765 467777 9999999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 173 (362)
++........ .. ......|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 78 ~~~~~~~~~~----~~-------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 128 (337)
T 1gxr_A 78 DISHPGNKSP----VS-------------------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp ETTSTTCCSC----SE-------------------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred ECCCCCceee----ee-------------------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 9975432110 00 001124778899999999999999999999999999988
Q ss_pred ce--EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC
Q 044557 174 FK--CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 174 ~~--~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~ 250 (362)
++ ....+ ..|...+.+++|+|++. +++++.||.|++||+.++. ....+..|..+|.+++|+|++.+|++++.
T Consensus 129 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 129 PTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT----LVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp C--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeeec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc----eeeeeecccCceEEEEECCCCCEEEEEec
Confidence 76 33444 46888999999999987 7899999999999998753 33345678999999999999999999999
Q ss_pred CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeee
Q 044557 251 DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI 328 (362)
Q Consensus 251 d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~ 328 (362)
|+.|++||+++.+. ...+ .|...+.+++++++ ++++++.|+.|++|+..... ...+.+|...|.+++|+|
T Consensus 204 dg~i~~~d~~~~~~----~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~ 275 (337)
T 1gxr_A 204 DNTVRSWDLREGRQ----LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAY 275 (337)
T ss_dssp TSEEEEEETTTTEE----EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEEEECT
T ss_pred CCcEEEEECCCCce----Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEEEECC
Confidence 99999999976431 2222 36778999999764 89999999999999975432 346789999999999987
Q ss_pred cCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 329 DNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 329 ~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++ .+|++++.||.|++||+..
T Consensus 276 ~~---------~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 276 CG---------KWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp TS---------SEEEEEETTSEEEEEETTT
T ss_pred CC---------CEEEEecCCCcEEEEECCC
Confidence 54 4689999999999999864
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=253.59 Aligned_cols=267 Identities=8% Similarity=0.068 Sum_probs=196.8
Q ss_pred ccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEE
Q 044557 16 KGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVW 93 (362)
Q Consensus 16 ~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w 93 (362)
+.-...|.+|+| +|+++||+|.|++|| |.+... .. ..|...+.++.++++. +++.|
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~-----~l-------~gh~~~v~~V~FsPdg--------~~~~~ 69 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK-----DI-------NCNSKNLFHVKEFPLE--------FENKL 69 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS-----CC-------SSBGGGTEEEEEECCC--------CCCTT
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc-----ee-------cCCCccEEEEEECCCC--------CcceE
Confidence 455789999999 489999999999999 643321 11 2356778888776655 44444
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 173 (362)
++...+... .. + ..|.+.|.+++|+|+|+.||+++.||.|++||.+.
T Consensus 70 ~~~~~~~~~-----~~---------------------------~-~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~ 116 (588)
T 2j04_A 70 DFELAQQNG-----LL---------------------------N-SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK 116 (588)
T ss_dssp TTSCCCSSC-----SS---------------------------T-TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE
T ss_pred EEEeCCCce-----Ee---------------------------e-cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc
Confidence 443322100 00 0 12457899999999999999999999999999654
Q ss_pred ceEEEeeeccCcc-----cEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc---eeehhh----hccccceeEEEEec
Q 044557 174 FKCLESITNAHDD-----AINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH---SLVDVL----ERHNSGINALALSC 240 (362)
Q Consensus 174 ~~~~~~~~~~h~~-----~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~---~~~~~~----~~h~~~v~~i~~s~ 240 (362)
++..+. |.. .+.+++|+|+|+ +++|+.||+|++||+.++.... ..+..+ .+|...|.+++|+|
T Consensus 117 --~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP 192 (588)
T 2j04_A 117 --MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE 192 (588)
T ss_dssp --EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred --eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence 555554 444 599999999997 8999999999999998764200 112232 56888999999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEee-cCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGAL-RGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG 319 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~ 319 (362)
|| +++++.|++|++|++..+... .....+ .+|...|.+++|++..+++++ |++|++|+..... ......||.+
T Consensus 193 dg--Laass~D~tVrlWd~~~~~~~-~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~--~~~~~~gh~~ 266 (588)
T 2j04_A 193 DV--LVAALSNNSVFSMTVSASSHQ-PVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYS--ISSLKTGSLE 266 (588)
T ss_dssp TE--EEEEETTCCEEEECCCSSSSC-CCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTE--EEEEECSCCS
T ss_pred Cc--EEEEeCCCeEEEEECCCCccc-cceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCe--EEEEEcCCCc
Confidence 99 889999999999999764421 112234 478889999999977888887 6999999965432 2122338999
Q ss_pred cEEEEEe--eecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 320 PVKCLAA--AIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 320 ~v~~~~~--~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.|..++| +|++ ..|++++.||+ |+|...
T Consensus 267 ~V~~va~~~s~d~---------~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 267 NFHIIPLNHEKES---------TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCEEEETTCSSC---------EEEEECSSCEE-EEEESS
T ss_pred eEEEEEeeeCCCC---------CEEEEEcCCCC-EEEeec
Confidence 9999999 6553 57999999999 999874
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=242.65 Aligned_cols=287 Identities=17% Similarity=0.240 Sum_probs=211.1
Q ss_pred eeeeEecCc---EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeEEEecCCcEEEEec
Q 044557 22 VSSLALAGK---FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDHKIRVWKI 95 (362)
Q Consensus 22 V~~l~~~~~---~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~w~~ 95 (362)
...++++++ ++++++.||.|++|++...... ......+..|.+.|.++.+.+ +.|++++.||+|++|++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence 344566554 3456899999999998542211 011112334678899999875 35999999999999999
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCcEEEEECCCc
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRTIKIWRTSDF 174 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~ 174 (362)
......... ......+.+|...|.+++|+|++ ++|++++.|+.|++||++++
T Consensus 112 ~~~~~~~~~---------------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 164 (402)
T 2aq5_A 112 PDGGLVLPL---------------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164 (402)
T ss_dssp CTTCCSSCB---------------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT
T ss_pred cCCCCcccc---------------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC
Confidence 765321100 00112345688999999999998 69999999999999999999
Q ss_pred eEEEeee-ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhh-hccccc-eeEEEEecCCCEEEEE--
Q 044557 175 KCLESIT-NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVL-ERHNSG-INALALSCDGSVLYSG-- 248 (362)
Q Consensus 175 ~~~~~~~-~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~h~~~-v~~i~~s~~~~~l~s~-- 248 (362)
+++..+. ..|...|.+++|+|++. +++++.||.|++||+.++.. ...+ ..|... +.++.|+|++.+|++|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 240 (402)
T 2aq5_A 165 AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV----VAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 (402)
T ss_dssp EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE----EEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce----eeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence 9888774 57999999999999986 88999999999999987643 2233 456655 8999999999999999
Q ss_pred -cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eE-EEeeCCCcEEEeeCCCCc--eeeeeEecCCCCcEE
Q 044557 249 -ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LV-CSGSADKTIRIWRGIDRN--YTCLAVLEGHRGPVK 322 (362)
Q Consensus 249 -~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~-~s~s~D~~i~~W~~~~~~--~~~~~~l~~h~~~v~ 322 (362)
+.|+.|++||+.......... ...|...+.++.|+++ ++ ++++.|+.|++|+..... ...+..+. |...|.
T Consensus 241 ~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~ 317 (402)
T 2aq5_A 241 RMSERQVALWDTKHLEEPLSLQ--ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQR 317 (402)
T ss_dssp TTCCEEEEEEETTBCSSCSEEE--ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCS
T ss_pred CCCCceEEEEcCccccCCceEE--eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCccc
Confidence 899999999998754322221 2246677899999865 55 567789999999975433 22333333 669999
Q ss_pred EEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+++|+|++. ++++ .|+.+++|++..
T Consensus 318 ~~~~sp~~~---------~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 318 GMGYMPKRG---------LEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EEEECCGGG---------SCGG--GTEEEEEEEEET
T ss_pred ceEEecccc---------ccee--cceeEEEEEcCC
Confidence 999988753 3443 567999999853
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=245.64 Aligned_cols=211 Identities=21% Similarity=0.286 Sum_probs=169.6
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce--EEEeeeccCcccEEEEEEcCC--C-cEEEEeCCCeEEEEeC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK--CLESITNAHDDAINAVALSDD--G-DVYTGSADKKIKVWRR 213 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~v~~~~~--~-~~~s~~~dg~i~iw~~ 213 (362)
.+|.+.|.+++|+|++++||+|+.|++|+|||+++++ ++..+ .+|..+|.+++|+++ + .|++++.|++|++||+
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 4799999999999999999999999999999998764 34445 489999999999853 4 4999999999999999
Q ss_pred CCCCCcceeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC----
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---- 287 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---- 287 (362)
.++... ....+.+|..+|.+++|+|+ +.+|++|+.|++|++||+.... .......+.+|...|.+++|+++
T Consensus 89 ~~~~~~--~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 89 ENGTWE--KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp SSSCCC--EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-CEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred CCCcce--EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-CcceeeeeccccCCcceEEEccccCCc
Confidence 865321 23345679999999999998 7899999999999999987542 22233456789999999888753
Q ss_pred ---------------eEEEeeCCCcEEEeeCCCC-ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcE
Q 044557 288 ---------------LVCSGSADKTIRIWRGIDR-NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351 (362)
Q Consensus 288 ---------------~~~s~s~D~~i~~W~~~~~-~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i 351 (362)
++++|+.|++|++|+.... ...++..+.+|...|.+++|+|++. ..+.+|+|||.|++|
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~-----~~~~~las~s~D~~v 240 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG-----LPTSTIASCSQDGRV 240 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS-----CSCCEEEEEETTCEE
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC-----CCCceEEEEcCCCeE
Confidence 7999999999999997432 2456788999999999999998642 113579999999999
Q ss_pred EEEeccc
Q 044557 352 KVWQISF 358 (362)
Q Consensus 352 ~~W~~~~ 358 (362)
++|++..
T Consensus 241 ~iw~~~~ 247 (316)
T 3bg1_A 241 FIWTCDD 247 (316)
T ss_dssp EEEECSS
T ss_pred EEEEccC
Confidence 9999864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=269.13 Aligned_cols=254 Identities=20% Similarity=0.311 Sum_probs=200.9
Q ss_pred eeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCc
Q 044557 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHK 89 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~ 89 (362)
..++.||.+.|++++|+ +++|++|+.||+|++||+..... ..
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~------------------------------------~~ 45 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH------------------------------------KL 45 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE------------------------------------EE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC------------------------------------cc
Confidence 46789999999999995 78999999999999998542100 00
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC--CCEEEEEECCCcEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD--ETLLYSVSWDRTIK 167 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~i~ 167 (362)
+ ..+.+|.+.|.+++|+|+ +++|++|+.||.|+
T Consensus 46 ~---------------------------------------------~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 46 I---------------------------------------------DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp E---------------------------------------------EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred c---------------------------------------------eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 0 011247788999999988 99999999999999
Q ss_pred EEECCCce--EEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec--
Q 044557 168 IWRTSDFK--CLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC-- 240 (362)
Q Consensus 168 iwd~~~~~--~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-- 240 (362)
+||+.+++ .+..+ ..|...|.+++|+|+ +. +++++.||.|++||+........ ..+..|..+|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~--~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 81 IWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--IIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC--EEEECCSSCEEEEEECCCC
T ss_pred EEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce--eEeecCCCceEEEEecCcc
Confidence 99999886 44444 479999999999998 65 88999999999999987643222 23457899999999999
Q ss_pred -----------CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-----eEEEeeCCCcEEEeeCC
Q 044557 241 -----------DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-----LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 241 -----------~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~s~s~D~~i~~W~~~ 304 (362)
++.+|++|+.||.|++||+............+.+|...|.+++|+++ ++++++.||.|++|+..
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 58999999999999999998766555667778899999999999754 79999999999999965
Q ss_pred CCcee---eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 305 DRNYT---CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 305 ~~~~~---~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..... ......+|...|++++|+|++ .+|++|+.||.|++|++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg---------~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSG---------NVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSSCCBCCBSSSSCCSSCCCCEEECTTT---------CCEEEECSSSCEECCBCCS
T ss_pred CCCCcceeEEeccCCCCCceEEEEEcCCC---------CEEEEEcCCCEEEEEecCC
Confidence 43211 233455799999999998764 3589999999999999873
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=259.13 Aligned_cols=248 Identities=23% Similarity=0.399 Sum_probs=198.4
Q ss_pred eEEeecceeEEEEEcC---ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEe
Q 044557 63 IVAVGKGAVKSLVVLA---DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWV 139 (362)
Q Consensus 63 ~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (362)
.+..|.+.|.++.+.+ +.|++++.|++|++|++........ .....+.
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~-----------------------------~~~~~~~ 427 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG-----------------------------VAQRRLT 427 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC-----------------------------EEEEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc-----------------------------cccceec
Confidence 4566888999998864 3599999999999999865331100 0112345
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~ 218 (362)
+|...|.+++|+|++++|++|+.|++|+|||+.+++++..+. +|...|.+++|+|++. +++++.|++|++||.... .
T Consensus 428 ~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~ 505 (694)
T 3dm0_A 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-C 505 (694)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-E
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-c
Confidence 799999999999999999999999999999999998888775 7999999999999986 899999999999997543 2
Q ss_pred cceeehhhhccccceeEEEEecCC--CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeC
Q 044557 219 KHSLVDVLERHNSGINALALSCDG--SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSA 294 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~ 294 (362)
...+.....+|...|.+++|+|++ ..|++++.|++|++||+.... ....+.+|...|.+++++++ ++++++.
T Consensus 506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~h~~~v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK----LRSTLAGHTGYVSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 222333345788999999999987 589999999999999997643 34567899999999999865 8999999
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|++|++||... ..++..+.. ...|.+++|+|++ .+|+++ .|+.|++||+..
T Consensus 582 Dg~i~iwd~~~--~~~~~~~~~-~~~v~~~~~sp~~---------~~l~~~-~~~~i~iwd~~~ 632 (694)
T 3dm0_A 582 DGVVLLWDLAE--GKKLYSLEA-NSVIHALCFSPNR---------YWLCAA-TEHGIKIWDLES 632 (694)
T ss_dssp TSBCEEEETTT--TEEEECCBC-SSCEEEEEECSSS---------SEEEEE-ETTEEEEEETTT
T ss_pred CCeEEEEECCC--CceEEEecC-CCcEEEEEEcCCC---------cEEEEE-cCCCEEEEECCC
Confidence 99999999643 455666654 4679999998763 355554 577899999864
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=247.14 Aligned_cols=247 Identities=15% Similarity=0.119 Sum_probs=185.2
Q ss_pred eecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC
Q 044557 66 VGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD 143 (362)
Q Consensus 66 ~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 143 (362)
.+.+.|.++.+.++ .|++++.|+.|++|++...... . ...+.+|..
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~-----~---------------------------~~~~~~h~~ 56 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK-----H---------------------------ARTFSDHDK 56 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEE-----E---------------------------CCCBCCCSS
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceE-----E---------------------------EEEEecCCc
Confidence 34567888888764 5888999999999998643100 0 011235888
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCce---EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFK---CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
.|.+++|+|++++|++++.|+.|++||+.+++ ....+ ..|...|.+++|+|++. +++++.|+.|++||+.++...
T Consensus 57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW 135 (377)
T ss_dssp CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence 99999999999999999999999999998876 44444 36899999999999986 889999999999999876421
Q ss_pred ceeehhhhc-cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC--------------CcEEEEEeecCccceeEEEEE
Q 044557 220 HSLVDVLER-HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD--------------GNILVVGALRGHTKSILCMAV 284 (362)
Q Consensus 220 ~~~~~~~~~-h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~--------------~~~~~~~~~~~h~~~v~~~~~ 284 (362)
.....+.. |...|.+++|+|++++|++++.|+.|++||+.... .....+..+ +|...|.+++|
T Consensus 136 -~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 213 (377)
T 3dwl_C 136 -WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF 213 (377)
T ss_dssp -CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE
T ss_pred -eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE
Confidence 12233445 89999999999999999999999999999985321 113345555 89999999999
Q ss_pred eCC--eEEEeeCCCcEEEeeCCCCce--eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 285 VSD--LVCSGSADKTIRIWRGIDRNY--TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 285 ~~~--~~~s~s~D~~i~~W~~~~~~~--~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+++ ++++++.|+.|++|+...... .++..+.+|...|.+++|+|++ .+|++|+.|+.+ +|+..
T Consensus 214 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 214 SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES---------AIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT---------EEEEEESSSSEE-EECCC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC---------CEEEEEcCCcEE-EEEeC
Confidence 865 899999999999999754322 2377889999999999999864 578888877666 66654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=245.06 Aligned_cols=232 Identities=14% Similarity=0.109 Sum_probs=163.0
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-------
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK------- 152 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------- 152 (362)
.+++++.|++|++|+++.++.... .....+.+|.+.|.+++|+|
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~-----------------------------~~~~~~~gH~~~v~~v~~~p~~~~~~~ 153 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQ-----------------------------HVLGGKSGHHNFVNDIDIADVYSADNR 153 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEE-----------------------------EEECTTTSCSSCEEEEEEEEEECTTCS
T ss_pred EEEEEeCCCcEEEEECCCCcccee-----------------------------eeecccCCCCCceEEEEEccccccccC
Confidence 589999999999999875431100 00011236999999999998
Q ss_pred -CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceee------
Q 044557 153 -DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLV------ 223 (362)
Q Consensus 153 -~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~------ 223 (362)
|+++||+||.|++|+|||+++..++..+. .|..++.+++|+|++. +++++.||+|++||+.++.......
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~ 232 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK 232 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred CCCCEEEEEECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence 88999999999999999998887766654 6788999999999873 8899999999999998764322110
Q ss_pred ---------------hhhhccccceeEEEEe-cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEE------
Q 044557 224 ---------------DVLERHNSGINALALS-CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC------ 281 (362)
Q Consensus 224 ---------------~~~~~h~~~v~~i~~s-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~------ 281 (362)
....+|...|.++.|+ ||++.|++++.|+++++||+...... ..+.+|...+..
T Consensus 233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGPKNLLPN 308 (393)
T ss_dssp CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCS
T ss_pred cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC----ceEeeecCccccEEEccc
Confidence 1124577889999987 79999999999999999998754321 122223222221
Q ss_pred ------------EEEeC---C-eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEec
Q 044557 282 ------------MAVVS---D-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345 (362)
Q Consensus 282 ------------~~~~~---~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 345 (362)
..+.+ . ++++|+.|++|++|+... ..+...+.+|..+|.+++|+|++ ++||++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~--~~~~~~~~~~~~~V~svafspdG---------~~LA~a 377 (393)
T 4gq1_A 309 VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE--KDSNSIPIQLGMPIVDFCWHQDG---------SHLAIA 377 (393)
T ss_dssp EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC--TTCCEEEEECSSCEEEEEECTTS---------SEEEEE
T ss_pred cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC--CcEEEEecCCCCcEEEEEEcCCC---------CEEEEE
Confidence 12221 2 678899999999999643 34466677899999999998765 469999
Q ss_pred CCCCcEEEEecc
Q 044557 346 SLDCDIKVWQIS 357 (362)
Q Consensus 346 s~D~~i~~W~~~ 357 (362)
+.|| +.+|++.
T Consensus 378 s~~G-v~lvrL~ 388 (393)
T 4gq1_A 378 TEGS-VLLTRLM 388 (393)
T ss_dssp ESSE-EEEEEEG
T ss_pred eCCC-eEEEEEe
Confidence 8766 5566653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-31 Score=236.88 Aligned_cols=250 Identities=13% Similarity=0.133 Sum_probs=199.3
Q ss_pred EeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec
Q 044557 65 AVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV 142 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 142 (362)
..+...+.++.+.++ .+++++.|+.|++|++..... .....+..|.
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~--------------------------------~~~~~~~~h~ 52 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW--------------------------------VQVHELKEHN 52 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE--------------------------------EEEEEEECCS
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE--------------------------------EeeeeecCCC
Confidence 345678888888765 588999999999999864320 0112234688
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeee-ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT-NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
..|.+++|+|++++|++++.|+.|++||+++++...... ..|...|.+++|+|++. +++++.||.|++||+.......
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 132 (372)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence 899999999999999999999999999998887544432 46888999999999987 8899999999999998765322
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC--------------CcEEEEEeecCccceeEEEEEeC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD--------------GNILVVGALRGHTKSILCMAVVS 286 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~--------------~~~~~~~~~~~h~~~v~~~~~~~ 286 (362)
........|...|.+++|+|++.+|++++.|+.|++||+.... .....+..+.+|...|.++++++
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 212 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence 2223335688999999999999999999999999999964210 01124556778999999999976
Q ss_pred C--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 287 D--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 287 ~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+ ++++++.|+.|++|+.. ...++..+.+|...|.+++|+|++ .+|++| .|+.|++|++..
T Consensus 213 ~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 213 NGSRVAWVSHDSTVCLADAD--KKMAVATLASETLPLLAVTFITES---------SLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SSSEEEEEETTTEEEEEEGG--GTTEEEEEECSSCCEEEEEEEETT---------EEEEEE-TTSSCEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEECC--CCceeEEEccCCCCeEEEEEecCC---------CEEEEE-eCCeEEEEEccC
Confidence 4 89999999999999964 345688899999999999998764 467777 899999999965
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=239.02 Aligned_cols=247 Identities=22% Similarity=0.316 Sum_probs=197.8
Q ss_pred cceeeeccc-CccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe
Q 044557 9 HHCLTTLKG-HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH 85 (362)
Q Consensus 9 ~~~~~tl~g-H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~ 85 (362)
.++...+.. |...|.+++|+ +++|++|+.||.|++||+.+... .. .+..+...+.++.+.++.+++++
T Consensus 123 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~-------~~~~~~~~v~~~~~~~~~l~~~~ 193 (401)
T 4aez_A 123 GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK--LR-------TMAGHQARVGCLSWNRHVLSSGS 193 (401)
T ss_dssp CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EE-------EECCCSSCEEEEEEETTEEEEEE
T ss_pred CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE--EE-------EecCCCCceEEEEECCCEEEEEc
Confidence 344455554 89999999994 78999999999999999875421 11 12235678888988888999999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.||.|++||+..... ....+..|...|.+++|+|++++|++|+.|+.
T Consensus 194 ~dg~i~i~d~~~~~~---------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 194 RSGAIHHHDVRIANH---------------------------------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp TTSEEEEEETTSSSC---------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCEEEEecccCcc---------------------------------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 999999999864221 01223468899999999999999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEe--CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGS--ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
|++||+++++.+..+. .|...|.+++|+|++. + ++++ .|+.|++||+.++.....+ .+...|.+++|+|+
T Consensus 241 v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-----~~~~~v~~~~~s~~ 314 (401)
T 4aez_A 241 VQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-----DAGSQVTSLIWSPH 314 (401)
T ss_dssp EEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-----ECSSCEEEEEECSS
T ss_pred EEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-----eCCCcEEEEEECCC
Confidence 9999999988877664 6889999999999774 4 4544 7999999999877543322 36678999999999
Q ss_pred CCEEEE--EcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC
Q 044557 242 GSVLYS--GACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 242 ~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~ 305 (362)
+.+|++ |+.||.|++|++.+.. ......+.+|...|.+++|+++ ++++++.|+.|++|+...
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSSSG--LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEETTE--EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred CCeEEEEeecCCCcEEEEecCCcc--ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 999999 5589999999997632 3344557789999999999865 899999999999999643
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=240.18 Aligned_cols=260 Identities=24% Similarity=0.370 Sum_probs=193.9
Q ss_pred cceeee--cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEE
Q 044557 9 HHCLTT--LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSA 84 (362)
Q Consensus 9 ~~~~~t--l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~ 84 (362)
.++++. +.+|...|++|+|+ |++||+|+.||+|++||+++... .. ....|...+.++...+..++++
T Consensus 135 g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~--~~-------~~~~h~~~v~~~s~~~~~l~sg 205 (420)
T 4gga_A 135 GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--LR-------NMTSHSARVGSLSWNSYILSSG 205 (420)
T ss_dssp CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EE-------EECCCSSCEEEEEEETTEEEEE
T ss_pred CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--EE-------EEeCCCCceEEEeeCCCEEEEE
Confidence 344554 45788999999995 78999999999999999876431 11 1223566778888888889999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|+.+++|+...... ....+.+|...+..+.++|+++++++++.|+
T Consensus 206 s~d~~i~~~d~~~~~~---------------------------------~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~ 252 (420)
T 4gga_A 206 SRSGHIHHHDVRVAEH---------------------------------HVATLSGHSQEVCGLRWAPDGRHLASGGNDN 252 (420)
T ss_dssp ETTSEEEEEETTSSSC---------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eCCCceeEeeecccce---------------------------------eeEEecccccceeeeeecCCCCeeeeeeccc
Confidence 9999999999764321 1123346888999999999999999999999
Q ss_pred cEEEEECCCceE----EEeeeccCcccEEEEEEcCCCc--EEE--EeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 165 TIKIWRTSDFKC----LESITNAHDDAINAVALSDDGD--VYT--GSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 165 ~i~iwd~~~~~~----~~~~~~~h~~~v~~v~~~~~~~--~~s--~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
.+++|+...++. +... ..|...|.+++|+|.+. +++ |+.|++|++||+.++..... + .+...+.++
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~-~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~----~-~~~~~v~~~ 326 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA----V-DAHSQVCSI 326 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEE-CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE----E-ECSSCEEEE
T ss_pred cceEEeeccccccceeeeee-cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee----e-ccccceeee
Confidence 999999987642 2223 46888999999999764 443 45899999999988753322 2 245678999
Q ss_pred EEecCCCEEEEEc--CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeee
Q 044557 237 ALSCDGSVLYSGA--CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 237 ~~s~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
.|+|++..+++++ .|+.|++||..+.+ .+..+.+|...|++++|+++ +|+|||.|++||+|++.+. .+..
T Consensus 327 ~~~~~~~~lv~~sg~~d~~I~iwd~~~~~----~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~--~~~~ 400 (420)
T 4gga_A 327 LWSPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL--DPAR 400 (420)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS--SCC-
T ss_pred eecCCCCeEEEEEecCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC--Cccc
Confidence 9999999988765 79999999997643 45678999999999999865 8999999999999997542 2233
Q ss_pred EecCCCCcEE
Q 044557 313 VLEGHRGPVK 322 (362)
Q Consensus 313 ~l~~h~~~v~ 322 (362)
..+.|...+.
T Consensus 401 ~~~~~~~~~~ 410 (420)
T 4gga_A 401 RREREKASAA 410 (420)
T ss_dssp ----------
T ss_pred hhhhccCCcc
Confidence 4444544443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=238.93 Aligned_cols=273 Identities=11% Similarity=0.031 Sum_probs=184.7
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCccccee
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~ 107 (362)
++++|+||+.||+|++||+++.... ..+ ....+.++.+.++ +++++.|++|++|+......
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~--~~~---------~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~------- 107 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTI--TTI---------TTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQIT------- 107 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCE--EEE---------EEECCCTTCCCCS-EEEECSTTEEEEEETTTEEE-------
T ss_pred CCCEEEEECCCCcEEEEECCCCcEE--EEE---------ecCCceeeeeCCc-eEEecCCCeEEEEEccCceE-------
Confidence 5789999999999999998764311 111 1234445555555 89999999999998753110
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--CCCEEEEEECCCcEEEEECCCceEEEeeeccCc
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK--DETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~ 185 (362)
+..... ...+. .....|.+.|.+++|+| ++++|++++.|++|++||+++++++......|.
T Consensus 108 ~~~~~~-------------~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 170 (343)
T 3lrv_A 108 ILDSKT-------------NKVLR----EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD 170 (343)
T ss_dssp EEETTT-------------CCEEE----EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred EeecCC-------------cceeE----EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence 000000 00000 01124668899999999 999999999999999999999988766555566
Q ss_pred ccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc-cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 186 DAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER-HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 186 ~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
..+.+++|+|++. +++|+.||.|++||+.++.... ..+.. |..+|++++|+|+|.+|++++ |+.|++||++...
T Consensus 171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~---~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS---SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV 246 (343)
T ss_dssp CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC---EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc---cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence 6899999999997 6788999999999998875431 22344 899999999999999999999 5599999998754
Q ss_pred CcEEEEEeecCcccee--EEEEEeCC--eEEEeeC-CCcEEEeeCCCCc--eeeeeEecCCCCcEEEEEeeecCCccCCC
Q 044557 264 GNILVVGALRGHTKSI--LCMAVVSD--LVCSGSA-DKTIRIWRGIDRN--YTCLAVLEGHRGPVKCLAAAIDNDRCDSS 336 (362)
Q Consensus 264 ~~~~~~~~~~~h~~~v--~~~~~~~~--~~~s~s~-D~~i~~W~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~~~ 336 (362)
... .+..+..|...+ .+++|+++ ++++++. |+.|++|+..... +.. .++..++|.+..
T Consensus 247 ~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~------ 311 (343)
T 3lrv_A 247 GTL-AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------DEESALCLQSDT------ 311 (343)
T ss_dssp TCB-SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------EEEEECCC----------
T ss_pred cce-eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe--------cCceeEecCccc------
Confidence 321 111222233333 35888754 8999888 9999999863321 211 345555554411
Q ss_pred CCceEEEecCCCCcEEEEe
Q 044557 337 DTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 337 ~~~~~l~s~s~D~~i~~W~ 355 (362)
.....|++++.|+.++++-
T Consensus 312 ~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 312 ADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp CCCCEEEEEEETTEEEEEE
T ss_pred cccceeEEEecCCceEEEE
Confidence 1223466777777777763
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=240.88 Aligned_cols=255 Identities=16% Similarity=0.226 Sum_probs=199.2
Q ss_pred eecceeEEEEEcC------ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEe
Q 044557 66 VGKGAVKSLVVLA------DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWV 139 (362)
Q Consensus 66 ~~~~~v~~i~~~~------~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (362)
.|...|.++.+.+ ..+++++.++.|++|++...... ..+. .....
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~----~~~~-------------------------~~~~~ 66 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI----RLLQ-------------------------SYVDA 66 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE----EEEE-------------------------EEECS
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE----Eeee-------------------------ecccc
Confidence 4577899999984 23778888889999998643211 0000 00011
Q ss_pred eecCceeEEEEecC----CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeC
Q 044557 140 HHVDAVSALALTKD----ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRR 213 (362)
Q Consensus 140 ~h~~~v~~~~~~~~----~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~ 213 (362)
.|...|.+++|+|+ +++|++|+.|+.|++||+.+++.+..+. .|...|.+++|+| ++. +++++.||.|++||+
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 25678999999999 6799999999999999999998888775 7999999999999 776 889999999999999
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcE------------------------EEE
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI------------------------LVV 269 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~------------------------~~~ 269 (362)
.++.... ....+..|...|.+++|+|++.+|++++.|+.|++||+....... ...
T Consensus 146 ~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 146 QTDTLVA-IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp TTTEEEE-EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred ecCeEEE-EecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 8764322 222235799999999999999999999999999999986422100 011
Q ss_pred EeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCc------------eeeeeEecCCCCcEEEEEeeecCCccCCCC
Q 044557 270 GALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRN------------YTCLAVLEGHRGPVKCLAAAIDNDRCDSSD 337 (362)
Q Consensus 270 ~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~------------~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~ 337 (362)
....+|...|.+++|+++++++++.|+.|++|+..... ...+..+.+|...|.+++|+|+.
T Consensus 225 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------- 297 (366)
T 3k26_A 225 STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF------- 297 (366)
T ss_dssp EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT-------
T ss_pred ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC-------
Confidence 23345899999999998999999999999999964322 25577889999999999998862
Q ss_pred CceEEEecCCCCcEEEEeccc
Q 044557 338 TSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 338 ~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+.+|++|+.||.|++||+..
T Consensus 298 ~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 298 WQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp TSSEEEEECTTSCEEEEECCS
T ss_pred CCcEEEEEecCCcEEEEECCC
Confidence 135799999999999999964
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-30 Score=238.16 Aligned_cols=232 Identities=31% Similarity=0.533 Sum_probs=195.5
Q ss_pred cceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeE
Q 044557 68 KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSA 147 (362)
Q Consensus 68 ~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 147 (362)
...+.++.+.++.+++++.||+|++||+.+.+. ...+.+|.+.|.+
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~----------------------------------~~~~~~h~~~v~~ 178 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC----------------------------------KRILTGHTGSVLC 178 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSCCE----------------------------------EEEECCCSSCEEE
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE----------------------------------EEEEcCCCCcEEE
Confidence 346888888888899999999999999865431 1122368889999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhh
Q 044557 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE 227 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 227 (362)
+++ ++++|++|+.||.|++||+++++++..+. .|...|.+++|++ +.+++++.||.|++||+.++... .....+.
T Consensus 179 l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~ 253 (435)
T 1p22_A 179 LQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI-HHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDI-TLRRVLV 253 (435)
T ss_dssp EEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC-CCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCC-EEEEEEC
T ss_pred EEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc-CCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCc-eeeeEec
Confidence 988 78899999999999999999999888775 7999999999974 47999999999999999876533 2224556
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCc
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~ 307 (362)
+|..+|.+++| ++.+|++|+.|+.|++||+.+.. .+..+.+|...|.++.+.++++++|+.|+.|++||.. .
T Consensus 254 ~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~--~ 325 (435)
T 1p22_A 254 GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE----FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE--C 325 (435)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT--T
T ss_pred CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc----EEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC--C
Confidence 79999999998 78999999999999999998643 3456778999999999999999999999999999964 3
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..++..+.+|...|.++++. +.+|++|+.||.|++||+.
T Consensus 326 ~~~~~~~~~h~~~v~~~~~~-----------~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 326 GACLRVLEGHEELVRCIRFD-----------NKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp CCEEEEECCCSSCEEEEECC-----------SSEEEEEETTSCEEEEEHH
T ss_pred CCEEEEEeCCcCcEEEEEec-----------CCEEEEEeCCCcEEEEECC
Confidence 56788999999999999882 2469999999999999984
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-29 Score=223.86 Aligned_cols=245 Identities=23% Similarity=0.323 Sum_probs=197.8
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH 85 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~ 85 (362)
..++...+.+|.+.|.++.|+ +++|++|+.||.|++|++........ ...+..+...+.++.+.++.+++++
T Consensus 48 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~l~~~~ 121 (313)
T 3odt_A 48 DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDP------LYTLIGHQGNVCSLSFQDGVVISGS 121 (313)
T ss_dssp SSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-------CEECCCSSCEEEEEEETTEEEEEE
T ss_pred CCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCc------ccchhhcccCEEEEEecCCEEEEEe
Confidence 455677888999999999995 78999999999999999865321111 1112335678888888888899999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEECCC
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDR 164 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~ 164 (362)
.|+.|++||.. . ....+..|...+.++.+.| ++++|++++.|+
T Consensus 122 ~d~~i~~~d~~--~----------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 165 (313)
T 3odt_A 122 WDKTAKVWKEG--S----------------------------------LVYNLQAHNASVWDAKVVSFSENKFLTASADK 165 (313)
T ss_dssp TTSEEEEEETT--E----------------------------------EEEEEECCSSCEEEEEEEETTTTEEEEEETTS
T ss_pred CCCCEEEEcCC--c----------------------------------EEEecccCCCceeEEEEccCCCCEEEEEECCC
Confidence 99999999821 1 0112235778899999988 899999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCE
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 244 (362)
.|++|| ..+....+...|...+.+++|+|++.+++++.||.|++||+.++.. ...+..|..+|++++|+|++ .
T Consensus 166 ~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~-~ 238 (313)
T 3odt_A 166 TIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDV----LRTYEGHESFVYCIKLLPNG-D 238 (313)
T ss_dssp CEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTS-C
T ss_pred CEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhh----hhhhhcCCceEEEEEEecCC-C
Confidence 999999 4455566655589999999999999999999999999999987653 33456789999999999999 6
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCC
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~ 305 (362)
|++++.|+.|++||+.+.+ ....+..|...|.+++++++ .+++++.|+.|++|+...
T Consensus 239 l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGS----LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEEETTSEEEEECTTTCC----EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred EEEEecCCEEEEEECCCCc----eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 9999999999999998654 34456788889999999865 578899999999999643
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-29 Score=224.92 Aligned_cols=245 Identities=22% Similarity=0.355 Sum_probs=195.5
Q ss_pred EEeecceeEEEEEcCc---eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 64 VAVGKGAVKSLVVLAD---KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 64 ~~~~~~~v~~i~~~~~---~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
+..|.+.|.++.+.++ .|+||+.|++|++||+...+.... .....+.+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~-----------------------------~~~~~l~~ 84 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG-----------------------------IPQRALRG 84 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE-----------------------------EEEEEECC
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc-----------------------------eeeEEEeC
Confidence 4457889999999753 589999999999999875432110 01123356
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
|...|.+++|+|++++|++++.|+.|++|+........... .+...+..+.+++++. +++++.|+.+++||.....
T Consensus 85 h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~-- 161 (340)
T 4aow_A 85 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC-- 161 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--
T ss_pred CCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec-CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc--
Confidence 89999999999999999999999999999999887766554 5677888888998876 8999999999999986542
Q ss_pred ceeehhhhccccceeEEEEecCC--CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCC
Q 044557 220 HSLVDVLERHNSGINALALSCDG--SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSAD 295 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D 295 (362)
........|...+..++|++++ .++++++.|+.|++||+.+.. ....+.+|...|.+++|+++ ++++|+.|
T Consensus 162 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D 236 (340)
T 4aow_A 162 -KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHIGHTGYLNTVTVSPDGSLCASGGKD 236 (340)
T ss_dssp -EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc----eeeEecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 2233456788999999998865 578899999999999997643 34567899999999999865 89999999
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+.|++|+.. ...++..+.+| ..|.+++|+|++ .+++++.|+.|++||+..
T Consensus 237 g~i~iwd~~--~~~~~~~~~~~-~~v~~~~~~~~~----------~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 237 GQAMLWDLN--EGKHLYTLDGG-DIINALCFSPNR----------YWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp CEEEEEETT--TTEEEEEEECS-SCEEEEEECSSS----------SEEEEEETTEEEEEETTT
T ss_pred CeEEEEEec--cCceeeeecCC-ceEEeeecCCCC----------ceeeccCCCEEEEEECCC
Confidence 999999964 34567777654 579999997653 256777899999999864
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-30 Score=231.91 Aligned_cols=282 Identities=12% Similarity=0.140 Sum_probs=186.1
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCcee-E
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKL-F 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l-~ 82 (362)
..+.+.++++|.+.|++++|+ |++|++|+.|+ +++||+++..... ......+..+.+ ..+.+ +
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 75 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-----------SQEMRHLSKVRMLHRTNYVAF 75 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-----------EEECSCCCEEEECTTSSEEEE
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-----------eeecCCeEEEEEcCCCCEEEE
Confidence 355677889999999999995 78999888765 7899976432111 011112333333 34444 5
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|++|++||+..+... .. ..|...|.+++++++. ++++ .
T Consensus 76 ~~~~d~~v~iWd~~~~~~~----------------------------------~~-~~~~~~v~~v~~~~~~--~~~~-~ 117 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKKQDV----------------------------------SR-IKVDAPVKDLFLSREF--IVVS-Y 117 (355)
T ss_dssp ECSSTTEEEEEETTTTEEE----------------------------------EE-EECSSCEEEEEECSSE--EEEE-E
T ss_pred EECCccEEEEEECCCCcEE----------------------------------EE-EECCCceEEEEEcCCE--EEEE-E
Confidence 6788899999998654310 01 1355688999998764 4444 3
Q ss_pred CCcEEEEECCCc-eEEEeeeccCcccEEEEEEcCCCcEEE--EeCCCeEEEEeCCCCCCc----c--------eeehhhh
Q 044557 163 DRTIKIWRTSDF-KCLESITNAHDDAINAVALSDDGDVYT--GSADKKIKVWRRSPGNKK----H--------SLVDVLE 227 (362)
Q Consensus 163 d~~i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~s--~~~dg~i~iw~~~~~~~~----~--------~~~~~~~ 227 (362)
|+.|++||+.+. +.+..+.. +...+++++ ..++. |+.||.|++||+.++... . .....+.
T Consensus 118 ~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~ 192 (355)
T 3vu4_A 118 GDVISVFKFGNPWKRITDDIR----FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192 (355)
T ss_dssp TTEEEEEESSTTCCBSSCCEE----EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEEC
T ss_pred cCEEEEEECCCCceeeEEecc----CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE
Confidence 889999999987 66555432 444566777 44444 689999999999865310 0 0134567
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCc-EEEEeccCCCCcEEEEEeec-C-ccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRS-IIVWEKEEDDGNILVVGALR-G-HTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
+|..+|++++|+|+|++|++|+.|++ |++||+.+++ .+..+. + |...|.+++|+++ ++++++.|++|++|+
T Consensus 193 ~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~----~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV----LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC----EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc----EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 89999999999999999999999999 9999998654 234555 5 9999999999865 899999999999999
Q ss_pred CCCCceeeeeEecC---------------------CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GIDRNYTCLAVLEG---------------------HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~~~~~~~~~l~~---------------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
...........+.+ +......++|++ ++.+|++++.||.+++|++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---------d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 269 IFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS---------ESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp SSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS---------SSEEEEEETTTTEEEEEEEE
T ss_pred ccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC---------CCCEEEEEeCCCeEEEEEEE
Confidence 75432211122211 111223455543 44678899999999999974
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-29 Score=252.15 Aligned_cols=246 Identities=20% Similarity=0.273 Sum_probs=197.4
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
+.+++.++.+|.+.|.++.|+ +++|++|+.||+|++||+.+... .. .+..|...+.++.+.++ .+++
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~--~~-------~~~~~~~~v~~~~~s~~~~~l~~ 114 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--VV-------DFEAHPDYIRSIAVHPTKPYVLS 114 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--EE-------EEECCSSCEEEEEECSSSSEEEE
T ss_pred CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EE-------EEecCCCCEEEEEEeCCCCEEEE
Confidence 456788899999999999994 78999999999999999875431 11 12335678889988765 5999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEEC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSW 162 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~ 162 (362)
++.||+|++|+++.... ....+..|...|.+++|+| +++.|++++.
T Consensus 115 ~~~dg~i~vw~~~~~~~---------------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 115 GSDDLTVKLWNWENNWA---------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp EETTSEEEEEEGGGTSE---------------------------------EEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred EcCCCEEEEEECCCCce---------------------------------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999864310 0112345788999999999 8899999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcC--CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSD--DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~--~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
|+.|++||+.+++....+...+...+.+++|+| ++. +++++.||.|++||..++. ....+..|..+|.+++|+
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFH 237 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE----EEEEEECCSSCEEEEEEC
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEc
Confidence 999999999888776666656668899999998 775 8899999999999997754 334456788999999999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRG 303 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~ 303 (362)
|++.+|++++.||.|++||..+.. ....+..|...+.+++++++ .+++++.|+.+.+|+.
T Consensus 238 ~~~~~l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 238 PTLPIIISGSEDGTLKIWNSSTYK----VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp SSSSEEEEEETTSCEEEEETTTCS----EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCc----EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 999999999999999999997643 34566778889999999865 2455555677888874
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=238.39 Aligned_cols=251 Identities=14% Similarity=0.183 Sum_probs=181.7
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCC-Ccccceeeecc-ceeEEe----ecceeEEEEEc----CceeEEE
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTF-SSELDQEFLSN-NNIVAV----GKGAVKSLVVL----ADKLFSA 84 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~-~~~~~~~~~~~-~~~~~~----~~~~v~~i~~~----~~~l~s~ 84 (362)
+|.+.|.+++|. +++|++|+.||+|++||++.. ........... ...+.. +...+.++... +..++++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 599999999994 689999999999999998521 11111111100 001111 12334454432 4469999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee--ecCceeEEEEecCCCEEEEEEC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH--HVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+.|+.|++||++..... ..+.. |.+.|.+++|+|++++|++|+.
T Consensus 189 ~~d~~i~iwd~~~~~~~----------------------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 234 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERL----------------------------------QIIENSPRHGAVSSICIDEECCVLILGTT 234 (437)
T ss_dssp ETTSEEEEEETTTCCEE----------------------------------EEEECCGGGCCEEEEEECTTSCEEEEEET
T ss_pred eCCCeEEEEeCCCCeee----------------------------------EEEccCCCCCceEEEEECCCCCEEEEEcC
Confidence 99999999998754310 11122 7789999999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcC----CCc-EEEEeCCCeEEEEeCCCCCCcceeeh-------------
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSD----DGD-VYTGSADKKIKVWRRSPGNKKHSLVD------------- 224 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~----~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~------------- 224 (362)
|+.|++||+++++++..+...|...|.+++++| ++. +++++.||.|++||+.++.....+..
T Consensus 235 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (437)
T 3gre_A 235 RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI 314 (437)
T ss_dssp TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence 999999999999998887657888999997664 564 88999999999999987653222210
Q ss_pred -------hhhc--cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEE-------------------------
Q 044557 225 -------VLER--HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVG------------------------- 270 (362)
Q Consensus 225 -------~~~~--h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------------------------- 270 (362)
.+.+ |...|++++|+ ++.+|++|+.|+.|++||+.+++....+..
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (437)
T 3gre_A 315 EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMK 393 (437)
T ss_dssp CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC
T ss_pred ccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecc
Confidence 0122 77889999999 789999999999999999876443221111
Q ss_pred --------eecCccceeEEEEEeCC----eEEEeeCCCcEEEee
Q 044557 271 --------ALRGHTKSILCMAVVSD----LVCSGSADKTIRIWR 302 (362)
Q Consensus 271 --------~~~~h~~~v~~~~~~~~----~~~s~s~D~~i~~W~ 302 (362)
....|...|.++++.++ +++||+.||.|++|+
T Consensus 394 ~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 394 RTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 12238899999998654 899999999999995
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=234.45 Aligned_cols=249 Identities=13% Similarity=0.166 Sum_probs=196.3
Q ss_pred EeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 65 AVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
..|.+.|.++.+.++.|++++.||+|++|++........ . .....+..|...
T Consensus 13 ~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~-~---------------------------~~~~~~~~h~~~ 64 (397)
T 1sq9_A 13 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP-K---------------------------DKSYSHFVHKSG 64 (397)
T ss_dssp SCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG-G---------------------------GGEEEEECCTTC
T ss_pred hhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccC-C---------------------------CcceEEecCCCc
Confidence 346788999999998899999999999999976542110 0 011233468899
Q ss_pred eeEEEEecC----C---CEEEEEECCCcEEEEECCCceE-----EEeeeccC-----cccEEEEEEc----CCCc--EEE
Q 044557 145 VSALALTKD----E---TLLYSVSWDRTIKIWRTSDFKC-----LESITNAH-----DDAINAVALS----DDGD--VYT 201 (362)
Q Consensus 145 v~~~~~~~~----~---~~l~s~s~d~~i~iwd~~~~~~-----~~~~~~~h-----~~~v~~v~~~----~~~~--~~s 201 (362)
|.+++|+|+ + ++|++++.|+.|++||+.+++. +..+. .| ...|.+++|+ |++. +++
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 143 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVA 143 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCCCCceEEEE
Confidence 999999999 9 9999999999999999987765 55554 56 5899999999 8885 678
Q ss_pred EeCCCeEEEEeCCC------CCCcc-eeehhh-------hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEE
Q 044557 202 GSADKKIKVWRRSP------GNKKH-SLVDVL-------ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNIL 267 (362)
Q Consensus 202 ~~~dg~i~iw~~~~------~~~~~-~~~~~~-------~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 267 (362)
++.||.|++||+.+ +.... .....+ ..|...|.+++|+|++ +|++++.|+.|++||+++..
T Consensus 144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~---- 218 (397)
T 1sq9_A 144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR---- 218 (397)
T ss_dssp EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE----
T ss_pred EeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc----
Confidence 99999999999987 44332 000022 3478899999999999 99999999999999997632
Q ss_pred EEEeecC---c---cceeEEEEEeC--CeEEEeeCC---CcEEEeeCCCCceeeeeEecC-------------CCCcEEE
Q 044557 268 VVGALRG---H---TKSILCMAVVS--DLVCSGSAD---KTIRIWRGIDRNYTCLAVLEG-------------HRGPVKC 323 (362)
Q Consensus 268 ~~~~~~~---h---~~~v~~~~~~~--~~~~s~s~D---~~i~~W~~~~~~~~~~~~l~~-------------h~~~v~~ 323 (362)
.+..+.+ | ...|.+++|++ .++++++.| +.|++|+.. ..+++..+.+ |...|.+
T Consensus 219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 296 (397)
T 1sq9_A 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE--FGERIGSLSVPTHSSQASLGEFAHSSWVMS 296 (397)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT--TCCEEEEECBC--------CCBSBSSCEEE
T ss_pred eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC--CCcccceeccCcccccccccccccCCcEEE
Confidence 3445666 8 89999999975 489999999 999999964 3466788888 9999999
Q ss_pred EEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 324 LAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++|+|++ .+|++|+.||.|++||+..
T Consensus 297 ~~~~~~~---------~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 297 LSFNDSG---------ETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EEECSSS---------SEEEEEETTSEEEEEETTT
T ss_pred EEECCCC---------CEEEEEeCCCeEEEEEcCC
Confidence 9998754 4699999999999999854
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-29 Score=219.64 Aligned_cols=247 Identities=25% Similarity=0.361 Sum_probs=191.6
Q ss_pred ccceeeec--ccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEE
Q 044557 8 DHHCLTTL--KGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFS 83 (362)
Q Consensus 8 ~~~~~~tl--~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s 83 (362)
+.++++++ .+|...|++++|+ +++|+||+.||+|++||+++... .. ....|...+.++...+..+++
T Consensus 54 tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~--~~-------~~~~h~~~~~~~~~~~~~l~s 124 (318)
T 4ggc_A 54 SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--LR-------NMTSHSARVGSLSWNSYILSS 124 (318)
T ss_dssp TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EE-------EEECCSSCEEEEEEETTEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee--EE-------EecCccceEEEeecCCCEEEE
Confidence 34566655 4788999999994 78999999999999999876431 11 122345566677777888999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.++.+++|+...... ......+|...+.++.+++++++|++++.|
T Consensus 125 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 171 (318)
T 4ggc_A 125 GSRSGHIHHHDVRVAEH---------------------------------HVATLSGHSQEVCGLRWAPDGRHLASGGND 171 (318)
T ss_dssp EETTSEEEEEETTSSSC---------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EecCCceEeeecCCCce---------------------------------eEEEEcCccCceEEEEEcCCCCEEEEEecC
Confidence 99999999998754321 112234688899999999999999999999
Q ss_pred CcEEEEECCCceEE---EeeeccCcccEEEEEEcCCCc-E---EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 164 RTIKIWRTSDFKCL---ESITNAHDDAINAVALSDDGD-V---YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 164 ~~i~iwd~~~~~~~---~~~~~~h~~~v~~v~~~~~~~-~---~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
+.|++||+++++.. ......|...|.+++++|.+. + ++++.+++|++||........ ...+...+..+
T Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-----~~~~~~~v~~~ 246 (318)
T 4ggc_A 172 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-----AVDAHSQVCSI 246 (318)
T ss_dssp SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-----EEECSSCEEEE
T ss_pred cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-----cccceeeeeee
Confidence 99999999876532 112235778899999998764 3 366789999999987654321 23467789999
Q ss_pred EEecCCCEEEEEc--CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC
Q 044557 237 ALSCDGSVLYSGA--CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 237 ~~s~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~ 305 (362)
.|+|++..+++++ .|+.|++||+.+.+ .+..+.+|.+.|.+++|+++ +|+|||.|++||+||+.+
T Consensus 247 ~~~~~~~~~~~~sg~~d~~i~iwd~~~~~----~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 247 LWSPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eecccccceEEEEEcCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999887654 79999999998643 45678999999999999865 899999999999999643
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=232.64 Aligned_cols=263 Identities=17% Similarity=0.229 Sum_probs=197.8
Q ss_pred ceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc---eeEE
Q 044557 10 HCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD---KLFS 83 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~l~s 83 (362)
+.+.++.+|.+.|.+++|+ +++|++|+.||+|++||+....... ........+..|...+.++.+.++ .|++
T Consensus 72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 149 (402)
T 2aq5_A 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL--PLREPVITLEGHTKRVGIVAWHPTAQNVLLS 149 (402)
T ss_dssp TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS--CBCSCSEEEECCSSCEEEEEECSSBTTEEEE
T ss_pred CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc--ccCCceEEecCCCCeEEEEEECcCCCCEEEE
Confidence 3566789999999999994 5799999999999999987643111 000112233456778999988764 5899
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEE--eeecCceeEEEEecCCCEEEEEE
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTW--VHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++.|++|++||+..+.. . ..+ ..|.+.|.+++|+|++++|++++
T Consensus 150 ~~~dg~i~iwd~~~~~~-------~---------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 150 AGCDNVILVWDVGTGAA-------V---------------------------LTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp EETTSCEEEEETTTTEE-------E---------------------------EEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred EcCCCEEEEEECCCCCc-------c---------------------------EEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 99999999999875421 0 111 24778999999999999999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCccc-EEEEEEcCCCc-EEEE---eCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDA-INAVALSDDGD-VYTG---SADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~-v~~v~~~~~~~-~~s~---~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
.|+.|++||+++++.+..+...|... +.+++|+|++. +++| +.|+.|++||+.+........ ...|...+.++
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~v~~~ 273 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ--ELDTSSGVLLP 273 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE--ECCCCSSCEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE--eccCCCceeEE
Confidence 99999999999999888774567765 89999999998 4555 589999999998765322211 12467789999
Q ss_pred EEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeee
Q 044557 237 ALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCL 311 (362)
Q Consensus 237 ~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~ 311 (362)
+|+|++++|+ +|+.|+.|++||+.+++.....+..+. |...|.+++|+++....++.|+.+++|++.......+
T Consensus 274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVNKCEIARFYKLHERKCEPI 348 (402)
T ss_dssp EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGGGTEEEEEEEEETTEEEEE
T ss_pred EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecccccceecceeEEEEEcCCCcEEEE
Confidence 9999999996 556799999999987654344444443 6688999999987433456788999999754433333
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=234.81 Aligned_cols=257 Identities=16% Similarity=0.297 Sum_probs=197.3
Q ss_pred EeecceeEEEEEcCc---eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 65 AVGKGAVKSLVVLAD---KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~---~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
..|.+.+.++.+.++ .+++++.||.|++|++........ +. . .......+.+|
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--------~~------------~----~~~~~~~~~~h 180 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--------PS------------G----ECQPDLRLRGH 180 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--------TT------------C----CCCCSEEEECC
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--------cc------------c----cCCCcEEecCC
Confidence 446678889988764 488999999999999864321100 00 0 00112234578
Q ss_pred cCceeEEEEecCCC-EEEEEECCCcEEEEECCCceE-------EEeeeccCcccEEEEEEcCC-Cc-EEEEeCCCeEEEE
Q 044557 142 VDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKC-------LESITNAHDDAINAVALSDD-GD-VYTGSADKKIKVW 211 (362)
Q Consensus 142 ~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~-------~~~~~~~h~~~v~~v~~~~~-~~-~~s~~~dg~i~iw 211 (362)
...+.+++|+|++. +|++|+.||.|++|++..... ...+ ..|...|.+++|+|+ +. +++++.||.|++|
T Consensus 181 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 89999999999998 999999999999999987321 2223 378999999999994 44 7799999999999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCC-EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--- 287 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--- 287 (362)
|+.+.... .....+..|..+|++++|+|++. .|++|+.||.|++||++..... +..+.+|...|.++.|+++
T Consensus 260 d~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 260 DTRNNNTS-KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp ETTCSCSS-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEECCSSCEEEEEECSSCTT
T ss_pred ECCCCCCC-cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEeecCCCCEEEEEECCCCCC
Confidence 99876311 12233457899999999999987 6889999999999999864332 3446679999999999864
Q ss_pred eEEEeeCCCcEEEeeCCCCc------------eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 288 LVCSGSADKTIRIWRGIDRN------------YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~~~~------------~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
++++++.|+.|++|+..... ..++..+.+|...|.+++|+|++. ++|++++.||.|++|+
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--------~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP--------WIICSVSEDNIMQVWQ 407 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST--------TEEEEEETTSEEEEEE
T ss_pred EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC--------CEEEEEECCCCEEEeE
Confidence 69999999999999964311 245677889999999999987643 3799999999999999
Q ss_pred ccc
Q 044557 356 ISF 358 (362)
Q Consensus 356 ~~~ 358 (362)
+..
T Consensus 408 ~~~ 410 (430)
T 2xyi_A 408 MAE 410 (430)
T ss_dssp ECH
T ss_pred ccc
Confidence 864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=229.01 Aligned_cols=246 Identities=12% Similarity=0.168 Sum_probs=186.5
Q ss_pred EeecceeEEEEEcCc--ee-EEEec---CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEE
Q 044557 65 AVGKGAVKSLVVLAD--KL-FSAHQ---DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTW 138 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~--~l-~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (362)
..|...|.++.+.++ .+ ++++. |+.|++|++..+... ....
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~---------------------------------~~~~ 61 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK---------------------------------LLRE 61 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE---------------------------------EEEE
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc---------------------------------ceee
Confidence 446778999999874 34 45555 999999998754310 0111
Q ss_pred eeecCceeEEEEecC---CCEEEEEECCCcEEEEECCCce-EEEeeeccCcccEEEEEE------cCCCc-EEEEeCCCe
Q 044557 139 VHHVDAVSALALTKD---ETLLYSVSWDRTIKIWRTSDFK-CLESITNAHDDAINAVAL------SDDGD-VYTGSADKK 207 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~---~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~v~~------~~~~~-~~s~~~dg~ 207 (362)
..|...|.+++|+|+ +++|++|+.|+.|++||+.+++ .+..+. .|...|.+++| +|++. +++++.||.
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 368889999999998 6999999999999999999887 666554 79999999955 57775 889999999
Q ss_pred EEEEeCCCCCCcceeehhhhc-cccceeEEE----EecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE
Q 044557 208 IKVWRRSPGNKKHSLVDVLER-HNSGINALA----LSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM 282 (362)
Q Consensus 208 i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~----~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~ 282 (362)
|++||+.++...........+ +...|.+++ |+|++.+|++++.|+.|++||++.... .....|...|.++
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~v~~~ 215 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNGVCSL 215 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEE
T ss_pred EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCceEEE
Confidence 999999876522222222122 234788888 688999999999999999999986432 1235678899999
Q ss_pred EEeC-----CeEEEeeCCCcEEEeeCCCCceeeee-----EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 283 AVVS-----DLVCSGSADKTIRIWRGIDRNYTCLA-----VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 283 ~~~~-----~~~~s~s~D~~i~~W~~~~~~~~~~~-----~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
+|++ +++++++.|+.|++|+... ..++. .+.+|...|.+++|+|++. .+|++|+.||.|+
T Consensus 216 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~dg~i~ 285 (357)
T 3i2n_A 216 EFDRKDISMNKLVATSLEGKFHVFDMRT--QHPTKGFASVSEKAHKSTVWQVRHLPQNR--------ELFLTAGGAGGLH 285 (357)
T ss_dssp EESCSSSSCCEEEEEESTTEEEEEEEEE--EETTTEEEEEEEECCSSCEEEEEEETTEE--------EEEEEEETTSEEE
T ss_pred EcCCCCCCCCEEEEECCCCeEEEEeCcC--CCcccceeeeccCCCcCCEEEEEECCCCC--------cEEEEEeCCCcEE
Confidence 9975 4899999999999999532 23333 3449999999999987532 3799999999999
Q ss_pred EEecccC
Q 044557 353 VWQISFP 359 (362)
Q Consensus 353 ~W~~~~~ 359 (362)
+||+..+
T Consensus 286 iwd~~~~ 292 (357)
T 3i2n_A 286 LWKYEYP 292 (357)
T ss_dssp EEEEECC
T ss_pred EeecCCC
Confidence 9999643
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=240.16 Aligned_cols=256 Identities=12% Similarity=0.169 Sum_probs=185.5
Q ss_pred cceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec---
Q 044557 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV--- 142 (362)
Q Consensus 68 ~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--- 142 (362)
.+.|.++.+.++ .|++++.||.|++|++.......... .. .. .....+.+|.
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~--------~~-----------~~----~~~~~~~~h~~~~ 84 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS--------RG-----------EY----NVYSTFQSHEPEF 84 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC--------CC-----------CE----EEEEEEECCCCEE
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc--------cc-----------ce----eEecccccccccc
Confidence 568889988764 59999999999999987644210000 00 00 0011233465
Q ss_pred ---------CceeEEEEecCC--CEEEEEECCCcEEEEECCCceEE----------------------------------
Q 044557 143 ---------DAVSALALTKDE--TLLYSVSWDRTIKIWRTSDFKCL---------------------------------- 177 (362)
Q Consensus 143 ---------~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~---------------------------------- 177 (362)
+.|.+++|+|++ ..|++++.|+.|++||+.+.+..
T Consensus 85 ~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 164 (447)
T 3dw8_B 85 DYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMV 164 (447)
T ss_dssp EGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEE
T ss_pred cccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheee
Confidence 789999999998 79999999999999998764431
Q ss_pred -----EeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee----hhhhccccceeEEEEecCC-CEEE
Q 044557 178 -----ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV----DVLERHNSGINALALSCDG-SVLY 246 (362)
Q Consensus 178 -----~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~----~~~~~h~~~v~~i~~s~~~-~~l~ 246 (362)
..+..+|...|.+++|+|++. ++++ .||.|++||+.......... ..+..|...|.+++|+|++ .+|+
T Consensus 165 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 243 (447)
T 3dw8_B 165 EASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV 243 (447)
T ss_dssp EEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred eccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence 123457999999999999998 5666 89999999997432111111 1356799999999999998 9999
Q ss_pred EEcCCCcEEEEeccCCCCcEEEEEeecCccc------------eeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeee
Q 044557 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTK------------SILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~------------~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
+|+.|+.|++||++...........+.+|.. .|.+++|+++ ++++++. +.|++|+... ...++.
T Consensus 244 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~-~~~~~~ 321 (447)
T 3dw8_B 244 YSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM-ENRPVE 321 (447)
T ss_dssp EEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC-CSSCSC
T ss_pred EEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC-Cccccc
Confidence 9999999999999875431101234556665 8999999865 8899988 9999999643 245677
Q ss_pred EecCCCCcE---------------EEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 313 VLEGHRGPV---------------KCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 313 ~l~~h~~~v---------------~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+.+|...+ ..++|+|++ .+|++|+.||.|++||+..
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~---------~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD---------SVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS---------SEEEEECSTTEEEEEETTT
T ss_pred eeeccccccccccccccccccccceEEEECCCC---------CEEEEeccCCEEEEEEcCC
Confidence 888886422 237776653 4689999999999999853
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=221.80 Aligned_cols=255 Identities=18% Similarity=0.258 Sum_probs=199.9
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
.+.+++.++.+|.+.|.++.|+ +++|++++.||+|++||+.+... ...+ .+...+.++.+.++ .++
T Consensus 62 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~--------~~~~~v~~~~~~~~~~~l~ 131 (369)
T 3zwl_B 62 LNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC--VATW--------KSPVPVKRVEFSPCGNYFL 131 (369)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--EEEE--------ECSSCEEEEEECTTSSEEE
T ss_pred CCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--EEEe--------ecCCCeEEEEEccCCCEEE
Confidence 3567888999999999999995 78999999999999999876431 1111 13556778887654 588
Q ss_pred EEecC-----CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC--ceeEEEEecCCC
Q 044557 83 SAHQD-----HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD--AVSALALTKDET 155 (362)
Q Consensus 83 s~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~ 155 (362)
+++.+ +.|++|++......... .... .........|.. .+.+++|+|+++
T Consensus 132 ~~~~~~~~~~g~i~~~d~~~~~~~~~~----~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (369)
T 3zwl_B 132 AILDNVMKNPGSINIYEIERDSATHEL----TKVS-------------------EEPIHKIITHEGLDAATVAGWSTKGK 188 (369)
T ss_dssp EEECCBTTBCCEEEEEEEEECTTTCCE----EEEC-------------------SSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred EecCCccCCCCEEEEEEecCCccceee----cccc-------------------cceeeeccCCcCccceeEEEEcCCCC
Confidence 88888 99999998754321110 0000 001112234555 899999999999
Q ss_pred EEEEEECCCcEEEEECCC-ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccce
Q 044557 156 LLYSVSWDRTIKIWRTSD-FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~-~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
+|++++.|+.|++||+++ .+.+..+. .|...|.+++|+|++. +++++.||.|++||+.++.....+ .+..++
T Consensus 189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~ 262 (369)
T 3zwl_B 189 YIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY-----ETDCPL 262 (369)
T ss_dssp EEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECSSCE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee-----cCCCCc
Confidence 999999999999999998 66666664 6889999999999997 889999999999999876543322 267889
Q ss_pred eEEEEecCCCEEEEEcCCC--------------cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCc
Q 044557 234 NALALSCDGSVLYSGACDR--------------SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKT 297 (362)
Q Consensus 234 ~~i~~s~~~~~l~s~~~d~--------------~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~ 297 (362)
..++|+|++.++++++.++ .+++||..... .+..+.+|...|.+++|+++ ++++++.|+.
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE----EIGRVQGHFGPLNTVAISPQGTSYASGGEDGF 338 (369)
T ss_dssp EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc----chhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence 9999999999999999998 89999987644 34567889999999999865 8999999999
Q ss_pred EEEeeCC
Q 044557 298 IRIWRGI 304 (362)
Q Consensus 298 i~~W~~~ 304 (362)
|++|+..
T Consensus 339 v~iw~~~ 345 (369)
T 3zwl_B 339 IRLHHFE 345 (369)
T ss_dssp EEEEEEC
T ss_pred EEEEECc
Confidence 9999964
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=229.54 Aligned_cols=250 Identities=12% Similarity=0.140 Sum_probs=183.7
Q ss_pred EeecceeEEEEEcCc---eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 65 AVGKGAVKSLVVLAD---KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~---~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
..|...|.++.+.++ .|++++.|+.|++|++....... .....+|
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------------------------~~~~~~h 117 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS--------------------------------FIQGMGP 117 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE--------------------------------EECCCST
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce--------------------------------eeecCCc
Confidence 345678999998764 59999999999999987543110 0011247
Q ss_pred cCceeEEEEec-CCCEEEEEECCCcEEEEECCCceEEEeee--ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 142 VDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESIT--NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 142 ~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
...|.+++|+| ++++|++++.|+.|++||+++. .+..+. ..|...|.+++|+|++. +++++.||.|++||+. +.
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~ 195 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH 195 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC
Confidence 88999999999 7799999999999999999864 344443 23457899999999987 8899999999999984 32
Q ss_pred CcceeehhhhccccceeEEEEecCCC-EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEee
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGS 293 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s 293 (362)
....+..|...|.+++|+|++. +|++++.|+.|++||+.........+..+ +|...|.+++|++ .++++++
T Consensus 196 ----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 196 ----EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp ----EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred ----EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence 3344567999999999999999 99999999999999998743222233333 6899999999987 4899999
Q ss_pred CCCcEEEeeCCCCceeeeeEecCC-------CCcEEEEEeeecCCcc--CCCCCceEEEecCCCCcEEEEeccc
Q 044557 294 ADKTIRIWRGIDRNYTCLAVLEGH-------RGPVKCLAAAIDNDRC--DSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 294 ~D~~i~~W~~~~~~~~~~~~l~~h-------~~~v~~~~~~~~~~~~--~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.|+.|++|+... ..+...+.+| ...+. +.|+|++... ...+++.+ +|+.|++|++||+..
T Consensus 271 ~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 271 QRNEIRVYSSYD--WSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS 339 (383)
T ss_dssp SSSEEEEEETTB--TTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT
T ss_pred CCCcEEEEECCC--CccccccccccccccccccceE-EeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC
Confidence 999999999643 2334444444 33333 2333332210 11122333 899999999999853
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=230.69 Aligned_cols=261 Identities=22% Similarity=0.316 Sum_probs=197.5
Q ss_pred eecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccc-eeeeccceeEEeecceeEEEEEcCc---eeEEEe
Q 044557 13 TTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELD-QEFLSNNNIVAVGKGAVKSLVVLAD---KLFSAH 85 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~---~l~s~~ 85 (362)
..+.+|.+.|+++++. +.+|++++.||.|++||+........ .........+..|...+.++.+.++ .|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 4567899999999995 45899999999999999865211100 0001112233456677888888754 699999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEECCC
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDR 164 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~ 164 (362)
.||+|++|++.......... .....+..|...|.+++|+| ++.+|++++.|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~---------------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg 254 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVI---------------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 254 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEE---------------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CCCeEEEEeCCCCCCCCcee---------------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC
Confidence 99999999997532111000 00112346888999999999 678999999999
Q ss_pred cEEEEECCCc---eEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 165 TIKIWRTSDF---KCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 165 ~i~iwd~~~~---~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
.|++||+++. +.+..+. .|...|.+++|+|++. +++|+.||.|++||+..... ....+..|..+|.+++|+
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---~~~~~~~h~~~v~~i~~s 330 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQWS 330 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEECCSSCEEEEEEC
T ss_pred eEEEEECCCCCCCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---CeEEeecCCCCEEEEEEC
Confidence 9999999876 4455453 7899999999999885 77999999999999986432 233455789999999999
Q ss_pred cCCC-EEEEEcCCCcEEEEeccCCCCc----------EEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCC
Q 044557 240 CDGS-VLYSGACDRSIIVWEKEEDDGN----------ILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 240 ~~~~-~l~s~~~d~~i~~wd~~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~ 304 (362)
|++. +|++++.|+.|++||+...... ...+..+.+|...|.+++|+++ ++++++.|+.|++|+..
T Consensus 331 p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 9985 6999999999999999762210 1245567889999999999865 89999999999999853
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-29 Score=217.54 Aligned_cols=190 Identities=15% Similarity=0.110 Sum_probs=139.7
Q ss_pred cCCCEEEEEE--CCCcEEEEEC-CCceEEEeeeccCcccEEEEEEcC---CCc-EEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 152 KDETLLYSVS--WDRTIKIWRT-SDFKCLESITNAHDDAINAVALSD---DGD-VYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 152 ~~~~~l~s~s--~d~~i~iwd~-~~~~~~~~~~~~h~~~v~~v~~~~---~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
++++++.+++ .|+.|++|++ .+++.+..+. .|...+..++|++ ++. +++++.|++|||||+.+++....+
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL-- 219 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKM-- 219 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEE--
Confidence 5666666543 5999999999 4477666554 6888888888887 445 889999999999999988644433
Q ss_pred hhhcc---ccceeEEEEecCCCEE------------EEEcCCCcEEEEeccCCCCcEEEEEe-ecCccceeEEEEEeCCe
Q 044557 225 VLERH---NSGINALALSCDGSVL------------YSGACDRSIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVVSDL 288 (362)
Q Consensus 225 ~~~~h---~~~v~~i~~s~~~~~l------------~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~ 288 (362)
.+| ...+.+++|+|+|.++ ++|+.|++|++||..++......... ..+|...+.+..+++.+
T Consensus 220 --~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~ 297 (356)
T 2w18_A 220 --HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHC 297 (356)
T ss_dssp --ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTE
T ss_pred --cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCE
Confidence 333 3467788999999876 67889999999998754311111111 24777777777777779
Q ss_pred EEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEE-EEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 289 VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVK-CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 289 ~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~-~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+++++.|++|||||.. .++++++|.+|...+. .++|+|++ .+|+|||.|++|||||+.
T Consensus 298 lASgS~DgTIkIWDl~--tGk~l~tL~gH~~~vvs~vafSPDG---------~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 298 AAAILTSGTIAIWDLL--LGQCTALLPPVSDQHWSFVKWSGTD---------SHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EEEEETTSCEEEEETT--TCSEEEEECCC--CCCCEEEECSSS---------SEEEEECTTSCEEEEEEC
T ss_pred EEEEcCCCcEEEEECC--CCcEEEEecCCCCCeEEEEEECCCC---------CEEEEEECCCcEEEecCC
Confidence 9999999999999964 4678899999998766 58998764 479999999999999963
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=238.91 Aligned_cols=205 Identities=16% Similarity=0.168 Sum_probs=162.3
Q ss_pred EeeecCceeEEEEec-CCCEEEEEECCCcEEEEECCCceEEEee-eccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeC
Q 044557 138 WVHHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESI-TNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRR 213 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~ 213 (362)
...|...|+|++|+| ++++||+|+.||.|+|||+.+++....+ ..+|.+.|.+++|+| ++. |++++.||+|++||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 346888999999999 5679999999999999999876533322 247999999999998 454 899999999999999
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEE
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVC 290 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~ 290 (362)
+.... ........+...+.+++|+|++.+|++|+.||.|++||+... .+..+.+|...|.+++|+++ +++
T Consensus 195 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-----~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 195 KGNIL--RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-----ELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp TSCEE--EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-----BCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred cCCce--eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-----eeEEEecccceEEeeeecCCCceEEE
Confidence 75421 122222334556889999999999999999999999998642 23467899999999999753 789
Q ss_pred EeeCCCcEEEeeCCCCce-eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 291 SGSADKTIRIWRGIDRNY-TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 291 s~s~D~~i~~W~~~~~~~-~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+++.|++|++||+..... ..+....+|...|.+++|+|++ .+|++|+.||+|+|||+..
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg---------~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG---------ARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS---------SEEEEEESSSCEEEEESSS
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCC---------CeeEEEcCCCEEEEEECCC
Confidence 999999999999643221 2233456899999999997654 4699999999999999853
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=219.21 Aligned_cols=241 Identities=13% Similarity=0.118 Sum_probs=189.5
Q ss_pred ecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 67 GKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 67 ~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
|.+.|.++.+.++ .|++++.|+.|++|++....... .......|...
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~-------------------------------~~~~~~~~~~~ 58 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-------------------------------DLLQSLRYKHP 58 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-------------------------------EEEEEEECSSC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc-------------------------------cceeeeecCCc
Confidence 5677888888754 59999999999999986543100 01122368889
Q ss_pred eeEEEEecCCC-EEEEEECCCcEEEEEC-CCceEEEeeecc--CcccEEEEEEcCCCcEEEEeCCCeEEEEeCCC-----
Q 044557 145 VSALALTKDET-LLYSVSWDRTIKIWRT-SDFKCLESITNA--HDDAINAVALSDDGDVYTGSADKKIKVWRRSP----- 215 (362)
Q Consensus 145 v~~~~~~~~~~-~l~s~s~d~~i~iwd~-~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~----- 215 (362)
|.+++|+|+++ +|++|+.|+.|++||+ .+++. ..+ .. |...|.+++|+|+..+++++.|+.|++||+.+
T Consensus 59 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~-~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QAL-TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp EEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EEC-BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC
T ss_pred eEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eec-cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccccc
Confidence 99999999999 9999999999999999 87765 333 36 99999999999933488999999999999875
Q ss_pred ----CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC-CCCcEEEEEeecCccceeEEEEEeC---C
Q 044557 216 ----GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE-DDGNILVVGALRGHTKSILCMAVVS---D 287 (362)
Q Consensus 216 ----~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~h~~~v~~~~~~~---~ 287 (362)
+... ..+. |...|.+++|+|++ +++++.|+.|++||++. ...... .....|...+.++++++ .
T Consensus 137 ~~~~~~~~----~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~ 207 (342)
T 1yfq_A 137 IAVKNLNS----NNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGT--IEESGLKYQIRDVALLPKEQE 207 (342)
T ss_dssp EEEEESCS----SSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCE--EEECSCSSCEEEEEECSGGGC
T ss_pred ccccCCee----eEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccce--eeecCCCCceeEEEECCCCCC
Confidence 3322 2233 78899999999987 99999999999999986 433222 22346788899999986 4
Q ss_pred eEEEeeCCCcEEEeeCCCC--c--eeeeeEecCCCC---------cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 288 LVCSGSADKTIRIWRGIDR--N--YTCLAVLEGHRG---------PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~~~--~--~~~~~~l~~h~~---------~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
++++++.|+.|++|+.... . ......+.+|.. .|.+++|+|++ .+|++|+.||.|++|
T Consensus 208 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH---------KFLYTAGSDGIISCW 278 (342)
T ss_dssp EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT---------CCEEEEETTSCEEEE
T ss_pred EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC---------CEEEEecCCceEEEE
Confidence 8999999999999996443 0 245667888866 99999998764 468999999999999
Q ss_pred eccc
Q 044557 355 QISF 358 (362)
Q Consensus 355 ~~~~ 358 (362)
|+..
T Consensus 279 d~~~ 282 (342)
T 1yfq_A 279 NLQT 282 (342)
T ss_dssp ETTT
T ss_pred cCcc
Confidence 9863
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-27 Score=222.89 Aligned_cols=238 Identities=15% Similarity=0.138 Sum_probs=180.3
Q ss_pred eeEEEEEcCc--ee-EEEecCCcEEEEecC--CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 70 AVKSLVVLAD--KL-FSAHQDHKIRVWKIN--NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 70 ~v~~i~~~~~--~l-~s~~~dg~i~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
.|.++.+.++ .| ++++.|++|++|++. .+... . ......|...
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-------~-------------------------~~~~~~~~~~ 151 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL-------K-------------------------LRKRFCFSKR 151 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE-------E-------------------------EEEEEECSSC
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee-------e-------------------------eeecccCCCC
Confidence 5888888765 44 788899999999986 33210 0 0011245678
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEE----eeeccCcccEEEEEEcCC---Cc-EEEEeCCCeEEEEeCCCC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLE----SITNAHDDAINAVALSDD---GD-VYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~----~~~~~h~~~v~~v~~~~~---~~-~~s~~~dg~i~iw~~~~~ 216 (362)
|.+++|+|++++|++|+.|+.|++|++.+++... .+ .+|...|.+++|+|+ +. +++++.|+.|++||+.++
T Consensus 152 v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred ceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 9999999999999999999999999998776433 33 368899999999999 85 889999999999999876
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec-----------------------
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR----------------------- 273 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~----------------------- 273 (362)
..... .+.+|..+|.+++|+ ++.+|++++.|++|++||+.+++. +..+.
T Consensus 231 ~~~~~---~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (450)
T 2vdu_B 231 FIVDK---WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN----LSTFDYNSLIKPYLNDQHLAPPRFQNEN 302 (450)
T ss_dssp TCEEE---ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE----EEEEECHHHHGGGCCTTSBC--------
T ss_pred ceeee---eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE----eeeecchhhhhhhhhhcccccccccccc
Confidence 53322 245799999999999 999999999999999999986542 12222
Q ss_pred --CccceeEEEEEeCC--eEEEee-CCCcEEEeeC--CC-CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEec
Q 044557 274 --GHTKSILCMAVVSD--LVCSGS-ADKTIRIWRG--ID-RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345 (362)
Q Consensus 274 --~h~~~v~~~~~~~~--~~~s~s-~D~~i~~W~~--~~-~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 345 (362)
.....|.++.+.++ ++++++ .|+.|++|+. .. ....++..+.+| ..|.+++|+|+ +.+++.+
T Consensus 303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~---------~~~v~~~ 372 (450)
T 2vdu_B 303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND---------EFQVTLD 372 (450)
T ss_dssp --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT---------EEEEEEC
T ss_pred cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC---------cEEEEEe
Confidence 12345778888754 788888 8999999997 22 234677888888 88999999863 2344444
Q ss_pred CC------CCcEEEEeccc
Q 044557 346 SL------DCDIKVWQISF 358 (362)
Q Consensus 346 s~------D~~i~~W~~~~ 358 (362)
+. +..|++|.+..
T Consensus 373 ~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 373 NKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CTTCCSSCCCSEEEEEEET
T ss_pred cccCCCCCCcceEEEEEEc
Confidence 43 56689998754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-29 Score=223.48 Aligned_cols=210 Identities=22% Similarity=0.300 Sum_probs=173.8
Q ss_pred EeeecCceeEEEEecCCCEEEEEECCCcEEEEECC--CceEEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEe
Q 044557 138 WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS--DFKCLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWR 212 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~--~~~~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~ 212 (362)
+.+|.+.|.+++|+|++++|++|+.|+.|++||+. +.+.+..+. .|...|.+++|+++ +. +++++.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 45799999999999999999999999999999997 445555554 79999999999876 55 88999999999999
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC----
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---- 286 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---- 286 (362)
+.++.. .....+..|..+|.+++|+|+ +.+|++++.|+.|++||+....... ...+.+|...|.+++|++
T Consensus 86 ~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 86 EENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC--EEEEECCTTCEEEEEECCCC--
T ss_pred cCCCce--eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee--eEEecCCCCceEEEEEcCcccc
Confidence 987531 233445668999999999999 9999999999999999998653322 224568999999999976
Q ss_pred -----------CeEEEeeCCCcEEEeeCCCC--ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 287 -----------DLVCSGSADKTIRIWRGIDR--NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 287 -----------~~~~s~s~D~~i~~W~~~~~--~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
.++++++.|+.|++|+.... ...+...+.+|...|.+++|+|++ ..+.+|++++.||.|++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~------~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV------LLRSYLASVSQDRTCII 235 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC------SSSEEEEEEETTSCEEE
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC------CCCCeEEEEeCCCEEEE
Confidence 48999999999999986432 245667899999999999998762 01367999999999999
Q ss_pred Eeccc
Q 044557 354 WQISF 358 (362)
Q Consensus 354 W~~~~ 358 (362)
||+..
T Consensus 236 wd~~~ 240 (379)
T 3jrp_A 236 WTQDN 240 (379)
T ss_dssp EEESS
T ss_pred EeCCC
Confidence 99865
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=218.38 Aligned_cols=281 Identities=18% Similarity=0.260 Sum_probs=177.6
Q ss_pred ccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC-----ceeEEEecC
Q 044557 16 KGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-----DKLFSAHQD 87 (362)
Q Consensus 16 ~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-----~~l~s~~~d 87 (362)
.+|...|.++.|. +.+|++++.||.|++||+.+.... ..+ .+...+.++.+.+ ..+++++.|
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA--DVF--------NFEETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE--EEE--------ECSSCEEEEEECSSCSSCCEEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc--eec--------cCCCceeeeEeecCCCCCcEEEEEcCC
Confidence 4699999999994 468999999999999998753211 111 1234455555543 268999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEEECCCcE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSVSWDRTI 166 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i 166 (362)
+.|++||+...... ..+..|...|.+++|+|+++ +|++|+.|+.|
T Consensus 166 ~~v~~~d~~~~~~~----------------------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i 211 (408)
T 4a11_B 166 PKVQLCDLKSGSCS----------------------------------HILQGHRQEILAVSWSPRYDYILATASADSRV 211 (408)
T ss_dssp SSEEEEESSSSCCC----------------------------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CeEEEEeCCCccee----------------------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcE
Confidence 99999998754321 11235778999999999998 69999999999
Q ss_pred EEEECCCce-EEEee--------------eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhh-hcc
Q 044557 167 KIWRTSDFK-CLESI--------------TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVL-ERH 229 (362)
Q Consensus 167 ~iwd~~~~~-~~~~~--------------~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~h 229 (362)
++||++... ++..+ ...|...|.+++|+|++. +++++.||.|++||+.++.......... ...
T Consensus 212 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 291 (408)
T 4a11_B 212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS 291 (408)
T ss_dssp EEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC
T ss_pred EEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccc
Confidence 999998764 22222 136888999999999997 8899999999999998875432221111 111
Q ss_pred ccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCc
Q 044557 230 NSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 230 ~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~ 307 (362)
...+........+..++.++.|+.|++||+.+.+ .+..+.+|...|.+++|+++ ++++++.||.|++|+...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-- 365 (408)
T 4a11_B 292 KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE----QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL-- 365 (408)
T ss_dssp SSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred cccceeEEecCCCceEEEEecCCEEEEEECcCCc----ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC--
Confidence 1222222223345677778889999999998644 35567899999999999865 899999999999999643
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+.+.....+... ..+.+ .....+.+.+.|+.+++|+..
T Consensus 366 ~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 366 YEPVPDDDETTTK---SQLNP--------AFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp --------------------------------------------------
T ss_pred CCccCCCCceEec---ccccc--------ccceeecccCccCceeecCCc
Confidence 2333332222211 11211 122345678889999999864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-27 Score=214.48 Aligned_cols=243 Identities=16% Similarity=0.227 Sum_probs=184.1
Q ss_pred eecceeEEEEEcCc-----eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 66 VGKGAVKSLVVLAD-----KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 66 ~~~~~v~~i~~~~~-----~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
.|.+.|.++.+.++ .|++++.||.|++|++...... ....+..
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~--------------------------------~~~~~~~ 84 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT--------------------------------IPKAQQM 84 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE--------------------------------EEEEEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce--------------------------------eEEEecc
Confidence 45778999998864 5999999999999998752210 0122346
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEE--cCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVAL--SDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~--~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
|...|.+++|+|++++|++++.|+.|++||+++++.+... .|...|.+++| +|++. +++++.||.|++||+.++.
T Consensus 85 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 8899999999999999999999999999999999877643 58999999999 88886 8899999999999998775
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC----eEEEee
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD----LVCSGS 293 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~s~s 293 (362)
....+ ..+ ..+.++.+. +..+++++.|+.+++|++...............|...+.++..... .+++++
T Consensus 163 ~~~~~----~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 163 PMMVL----QLP-ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp CSEEE----ECS-SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEE----ecC-CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence 44332 222 345555554 5689999999999999998654333322222234444444444443 399999
Q ss_pred CCCcEEEeeCCCCce-eeeeEecCCCC------------cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 294 ADKTIRIWRGIDRNY-TCLAVLEGHRG------------PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 294 ~D~~i~~W~~~~~~~-~~~~~l~~h~~------------~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.|+.|++|+...... ..+..+.+|.. .|.+++|+|++ .+|++|+.||.|++||+..
T Consensus 236 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---------~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 236 IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH---------GTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT---------CCEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC---------CEEEEEccCCeEEEEECCC
Confidence 999999999754322 45667788877 79999998764 4699999999999999864
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=216.51 Aligned_cols=215 Identities=20% Similarity=0.291 Sum_probs=172.4
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCc----eEEEeeeccCcccEEEEEEcC--CCc-EEEEeCCCeEEEE
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF----KCLESITNAHDDAINAVALSD--DGD-VYTGSADKKIKVW 211 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~~h~~~v~~v~~~~--~~~-~~s~~~dg~i~iw 211 (362)
.+|.+.|.+++|+|++++|++|+.|+.|++||+.+. +....+ ..|...|.+++|+| ++. +++++.||.|++|
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 479999999999999999999999999999999865 344444 37999999999998 465 8899999999999
Q ss_pred eCCCCCCcc-----eeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEE--E---EE----eecCc
Q 044557 212 RRSPGNKKH-----SLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNIL--V---VG----ALRGH 275 (362)
Q Consensus 212 ~~~~~~~~~-----~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~--~---~~----~~~~h 275 (362)
|+.++.... .....+..|..+|.+++|+|+ +.+|++++.|+.|++||+.+...... . .. ...+|
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 998764321 334456679999999999999 99999999999999999876542110 0 00 01257
Q ss_pred cceeEEEEEeC-----CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc
Q 044557 276 TKSILCMAVVS-----DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD 350 (362)
Q Consensus 276 ~~~v~~~~~~~-----~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~ 350 (362)
...+.++++++ .++++++.|+.+.+|.........+..+.+|...|.+++|+|++.+ ...+|++|+.||.
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~-----~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR-----WYQLIATGCKDGR 241 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC-----SSEEEEEEETTSC
T ss_pred ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC-----cceEEEEEcCCCe
Confidence 78889999864 4899999999998887655555667889999999999999876421 1257999999999
Q ss_pred EEEEecccC
Q 044557 351 IKVWQISFP 359 (362)
Q Consensus 351 i~~W~~~~~ 359 (362)
|++||+...
T Consensus 242 i~iwd~~~~ 250 (351)
T 3f3f_A 242 IRIFKITEK 250 (351)
T ss_dssp EEEEEEEEC
T ss_pred EEEEeCCCC
Confidence 999999653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=219.91 Aligned_cols=203 Identities=15% Similarity=0.094 Sum_probs=163.7
Q ss_pred eecCceeEEEEecCCCEE-EEEECCCcEEEEECC--CceEEEeeec-cCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCC
Q 044557 140 HHVDAVSALALTKDETLL-YSVSWDRTIKIWRTS--DFKCLESITN-AHDDAINAVALSDDGD-VYTGSADKKIKVWRRS 214 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l-~s~s~d~~i~iwd~~--~~~~~~~~~~-~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~ 214 (362)
.|.+.|.+++|+|++++| ++++.|+.|++||+. +++++..+.. .|...|.+++|+|++. +++++.||.|++|++.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 567789999999999996 899999999999998 7777766542 4678899999999997 8899999999999998
Q ss_pred CCCCcceeehhhhccccceeEEEEecC---CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEE
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCD---GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVC 290 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~---~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~ 290 (362)
++.........+.+|...|.+++|+|+ +++|++|+.|+.|++||+.+... ....+.+|...|.+++|+ +.+++
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~~~~sd~~~l~ 256 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI---VDKWLFGHKHFVSSICCGKDYLLL 256 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC---EEEECCCCSSCEEEEEECSTTEEE
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce---eeeeecCCCCceEEEEECCCCEEE
Confidence 765432133355679999999999999 99999999999999999986542 112256899999999997 45999
Q ss_pred EeeCCCcEEEeeCCCCceeeeeEecC-------------------------CCCcEEEEEeeecCCccCCCCCceEEEec
Q 044557 291 SGSADKTIRIWRGIDRNYTCLAVLEG-------------------------HRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345 (362)
Q Consensus 291 s~s~D~~i~~W~~~~~~~~~~~~l~~-------------------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 345 (362)
+++.|+.|++|+... .+++..+.. +...|.+++++|++ .+|+++
T Consensus 257 s~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---------~~l~~~ 325 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKT--GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL---------PFVAFF 325 (450)
T ss_dssp EEESSSEEEEEETTT--CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS---------SEEEEE
T ss_pred EEeCCCeEEEEECCC--CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC---------CEEEEE
Confidence 999999999999643 444555542 34578888887653 356666
Q ss_pred C-CCCcEEEEec
Q 044557 346 S-LDCDIKVWQI 356 (362)
Q Consensus 346 s-~D~~i~~W~~ 356 (362)
+ .|+.|++|++
T Consensus 326 ~~~d~~i~iw~~ 337 (450)
T 2vdu_B 326 VEATKCIIILEM 337 (450)
T ss_dssp ETTCSEEEEEEE
T ss_pred ECCCCeEEEEEe
Confidence 6 8999999999
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-28 Score=222.71 Aligned_cols=270 Identities=7% Similarity=0.009 Sum_probs=189.5
Q ss_pred cceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eEEEec
Q 044557 9 HHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LFSAHQ 86 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~s~~~ 86 (362)
.+..++++||.+.|.+++|++.- .++++++|+.+. ...... .+...|.++.++++. |++++.
T Consensus 42 ~~~~~~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~---~~~~~~--------~~~~~V~~vawSPdG~~LAs~s~ 105 (588)
T 2j04_A 42 PKYAKDINCNSKNLFHVKEFPLE-----FENKLDFELAQQ---NGLLNS--------QPVCYPRVCKPSPIDDWMAVLSN 105 (588)
T ss_dssp ECCCSCCSSBGGGTEEEEEECCC-----CCCTTTTSCCCS---SCSSTT--------SCSCCEEEEEECSSSSCEEEEET
T ss_pred ccccceecCCCccEEEEEECCCC-----CcceEEEEeCCC---ceEeec--------CCCCcEEEEEECCCCCEEEEEeC
Confidence 34445678999999999996532 556655555332 111110 124578888888764 999999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
||+|++|+.+. .+..+. ... .--...+.+++|+|||++||+|+.||+|
T Consensus 106 dg~V~iwd~~~---------~l~~l~-~~~----------------------~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 106 NGNVSVFKDNK---------MLTNLD-SKG----------------------NLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp TSCEEEEETTE---------EEEECC-CSS----------------------CSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCcEEEEeCCc---------eeeecc-CCC----------------------ccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 99999998532 111110 000 0001358899999999999999999999
Q ss_pred EEEECCCce-------EEEeee---ccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh-hccccceeE
Q 044557 167 KIWRTSDFK-------CLESIT---NAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL-ERHNSGINA 235 (362)
Q Consensus 167 ~iwd~~~~~-------~~~~~~---~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~h~~~v~~ 235 (362)
+|||+.+++ .+.++. .+|...|.+++|+|+| +++++.|++|++|++...... .....+ ..|...|.+
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~-~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQ-PVSRMIQNASRRKITD 231 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSC-CCEEEEECCCSSCCCC
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccc-cceeeecccccCcEEE
Confidence 999998874 245552 4688899999999999 999999999999999765421 111223 368889999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE--eCC--eEEEeeCCCcEEEeeCCC------
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSD--LVCSGSADKTIRIWRGID------ 305 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~--~~~s~s~D~~i~~W~~~~------ 305 (362)
++|+ |+.|++++ |++|++||..... .. ....+|...|..+++ +++ .++++++||+ |+|....
T Consensus 232 vaFs--g~~LASa~-~~tIkLWd~~~~~--~~--~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd 303 (588)
T 2j04_A 232 LKIV--DYKVVLTC-PGYVHKIDLKNYS--IS--SLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTAD 303 (588)
T ss_dssp EEEE--TTEEEEEC-SSEEEEEETTTTE--EE--EEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECC
T ss_pred EEEE--CCEEEEEe-CCeEEEEECCCCe--EE--EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCC
Confidence 9999 68999998 7999999987532 21 122389999999999 876 6999999999 9997421
Q ss_pred ---------------CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC
Q 044557 306 ---------------RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346 (362)
Q Consensus 306 ---------------~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s 346 (362)
..+..+..+.+ ...|.+++|+|++ +++|+++
T Consensus 304 ~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG---------~~lA~~~ 349 (588)
T 2j04_A 304 NIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDG---------YSIAIVY 349 (588)
T ss_dssp CSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTS---------SEEEEEE
T ss_pred ceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCC---------CEEEEEE
Confidence 00111222333 5569999998775 4577765
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=217.53 Aligned_cols=226 Identities=8% Similarity=-0.037 Sum_probs=163.7
Q ss_pred CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 78 ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 78 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
+..+++++.||+|++||++.+.... .+ ....|.++.++|+ +
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~----~~--------------------------------~~~~v~~~~~~~~---~ 88 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTIT----TI--------------------------------TTPNPRTGGEHPA---I 88 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEE----EE--------------------------------EEECCCTTCCCCS---E
T ss_pred CCEEEEECCCCcEEEEECCCCcEEE----EE--------------------------------ecCCceeeeeCCc---e
Confidence 3459999999999999997654210 00 0234556667777 8
Q ss_pred EEEECCCcEEEEECC---------CceEEEeeeccCcccEEEEEEcC--CCc-EEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 158 YSVSWDRTIKIWRTS---------DFKCLESITNAHDDAINAVALSD--DGD-VYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~---------~~~~~~~~~~~h~~~v~~v~~~~--~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
++++.|++|++|+.. +.+.+......|...|.+++|+| ++. +++++.||+|++||+.++..... .
T Consensus 89 ~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~---~ 165 (343)
T 3lrv_A 89 ISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV---H 165 (343)
T ss_dssp EEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE---E
T ss_pred EEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE---E
Confidence 999999999999765 44545556667878999999999 886 78899999999999987653211 1
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
...|...|.+++|+|+|.+|++|+.|+.|++||+++.... ...+.+ |...|.+++|+++ ++++++ |+.|++||
T Consensus 166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd 241 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA---SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFD 241 (343)
T ss_dssp CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC---CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC---ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEE
Confidence 1235668999999999999999999999999999876532 123566 9999999999865 889999 45999999
Q ss_pred CCCCce-eeeeEecCCCCcEE--EEEeeecCCccCCCCCceEEEecCC-CCcEEEEeccc
Q 044557 303 GIDRNY-TCLAVLEGHRGPVK--CLAAAIDNDRCDSSDTSYLVCSGSL-DCDIKVWQISF 358 (362)
Q Consensus 303 ~~~~~~-~~~~~l~~h~~~v~--~~~~~~~~~~~~~~~~~~~l~s~s~-D~~i~~W~~~~ 358 (362)
...... ..+..+..|...+. +++|+|++ .+|++++. |+.|++|++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 242 LRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG---------KNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp TTSSTTCBSSCCCBC-----CCEEEEECTTS---------SEEEEEETTTTEEEEEEECT
T ss_pred cCCCCcceeecccccccccccceEEEECCCC---------CEEEEecCCCCcEEEEEEcc
Confidence 643221 11222333545554 58886553 56888777 99999999854
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=233.31 Aligned_cols=211 Identities=21% Similarity=0.294 Sum_probs=172.5
Q ss_pred EeeecCceeEEEEecCCCEEEEEECCCcEEEEECC--CceEEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEe
Q 044557 138 WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS--DFKCLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWR 212 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~--~~~~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~ 212 (362)
+.+|.+.|.+++|+|++++|++|+.||.|++||+. +++.+..+ .+|..+|.+++|+|+ +. +++++.||.|++||
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 35799999999999999999999999999999987 44555555 479999999999876 65 88999999999999
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC----
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---- 286 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---- 286 (362)
+.++.. .....+..|..+|++++|+|+ +..+++|+.||.|++||+....... ...+.+|...|.++.+++
T Consensus 84 ~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~--~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 84 EENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC--CEEEECCSSCEEEEEECCCC--
T ss_pred CCCCcc--cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc--eeEeecCCCceEEEEecCcccc
Confidence 987531 233445679999999999999 9999999999999999998653221 224568999999999976
Q ss_pred -----------CeEEEeeCCCcEEEeeCCCC--ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 287 -----------DLVCSGSADKTIRIWRGIDR--NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 287 -----------~~~~s~s~D~~i~~W~~~~~--~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
.++++|+.||.|++|+.... ...+...+.+|...|.+++|+|+. ..+.+|++|+.||+|++
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~------~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV------LLRSYLASVSQDRTCII 233 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC------SSSEEEEEEESSSCEEE
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC------CCCCEEEEEecCCEEEE
Confidence 48999999999999986432 236677899999999999998762 11467999999999999
Q ss_pred EecccC
Q 044557 354 WQISFP 359 (362)
Q Consensus 354 W~~~~~ 359 (362)
||+...
T Consensus 234 wd~~~~ 239 (753)
T 3jro_A 234 WTQDNE 239 (753)
T ss_dssp EEESSS
T ss_pred ecCCCC
Confidence 999653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-25 Score=203.31 Aligned_cols=286 Identities=14% Similarity=0.119 Sum_probs=200.7
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
+.+..+..+. .+.+++++ +.++++++.|++|++||+.+.... .... ......+.+.+.++.+.++ .+++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~~~s~~ 188 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSP--PEKYKKKLGFVETISIPEHNELWVSQM 188 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE--EECC--CHHHHTTCCEEEEEEEGGGTEEEEEEG
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe--eecC--cccccccCCceeEEEEcCCCEEEEEEC
Confidence 4455555554 34578884 568888999999999998764321 1000 0001123456777777543 478888
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE-EECCC
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS-VSWDR 164 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~d~ 164 (362)
.|+.|++||++..... ..+..|...+.+++|+|+++.+++ ++.|+
T Consensus 189 ~d~~v~~~d~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (433)
T 3bws_A 189 QANAVHVFDLKTLAYK----------------------------------ATVDLTGKWSKILLYDPIRDLVYCSNWISE 234 (433)
T ss_dssp GGTEEEEEETTTCCEE----------------------------------EEEECSSSSEEEEEEETTTTEEEEEETTTT
T ss_pred CCCEEEEEECCCceEE----------------------------------EEEcCCCCCeeEEEEcCCCCEEEEEecCCC
Confidence 9999999998653310 111246678899999999998755 45899
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe--------CCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS--------ADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~--------~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
.|++||+++++.+..+. +...+.+++|+|++. +++++ .||.|++||+.++.... . ..|...+..
T Consensus 235 ~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~----~-~~~~~~~~~ 307 (433)
T 3bws_A 235 DISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID----T-IGPPGNKRH 307 (433)
T ss_dssp EEEEEETTTTEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE----E-EEEEECEEE
T ss_pred cEEEEECCCCcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe----e-ccCCCCcce
Confidence 99999999998877664 345689999999996 66666 48999999998764221 1 245667889
Q ss_pred EEEecCCCEE-EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeC---------------CCc
Q 044557 236 LALSCDGSVL-YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSA---------------DKT 297 (362)
Q Consensus 236 i~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~---------------D~~ 297 (362)
++|+|+++.+ ++++.|+.|++||+.+.+ ....+. +...+.+++++++ ++++++. ||.
T Consensus 308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~----~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~ 382 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSKIEVYDLKEKK----VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK 382 (433)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEETTTTE----EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred EEECCCCCEEEEEecCCCEEEEEECCCCc----EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE
Confidence 9999999755 666899999999997532 222333 5667889999865 6666665 579
Q ss_pred EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|++|+... .+.+..+.+ ...+.+++|+|++. .++++++.|++|++|+++
T Consensus 383 v~~~d~~~--~~~~~~~~~-~~~~~~~~~s~dg~--------~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 383 VYVIDTTT--DTVKEFWEA-GNQPTGLDVSPDNR--------YLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEETTT--TEEEEEEEC-SSSEEEEEECTTSC--------EEEEEETTTTEEEEEEET
T ss_pred EEEEECCC--CcEEEEecC-CCCCceEEEcCCCC--------EEEEEECCCCeEEEEEec
Confidence 99999643 455666665 45789999987643 234444569999999985
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-24 Score=198.28 Aligned_cols=261 Identities=14% Similarity=0.136 Sum_probs=189.2
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--ee-EEEecCCcEEEEecCCCCCCcccce
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KL-FSAHQDHKIRVWKINNQEPDHQKYT 106 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l-~s~~~dg~i~~w~~~~~~~~~~~~~ 106 (362)
..+++++.|++|++||+.+.. ....+ . +...+.++.+.++ .+ ++++.|++|++||+..++.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~--~~~~~-------~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~------ 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK--VTATI-------P-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV------ 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE--EEEEE-------E-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE------
T ss_pred EEEEEcCCCCEEEEEECCCCe--EEEEe-------e-cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE------
Confidence 468899999999999987542 11111 1 1234677778765 35 5666899999999865431
Q ss_pred eeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE-EECCCcEEEEECCCceEEEeeeccCc
Q 044557 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS-VSWDRTIKIWRTSDFKCLESITNAHD 185 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~h~ 185 (362)
.. . ..+...+.+++|+|++++|+. ++.|+.|++||+.+++.+..+. +.
T Consensus 67 -~~---------------------------~-~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~ 115 (391)
T 1l0q_A 67 -IA---------------------------T-VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TG 115 (391)
T ss_dssp -EE---------------------------E-EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CS
T ss_pred -EE---------------------------E-EECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CC
Confidence 00 0 122347899999999998755 4567999999999998877664 34
Q ss_pred ccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE-EEEcCCCcEEEEeccCC
Q 044557 186 DAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL-YSGACDRSIIVWEKEED 262 (362)
Q Consensus 186 ~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~s~~~d~~i~~wd~~~~ 262 (362)
..+.+++|+|+++ + ++++.|+.|++||+.++... ..+.. ...+..++|+|++++| ++++.|+.|++||+.+.
T Consensus 116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI----NTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----EEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE----EEEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 5789999999997 5 57888999999999876432 22222 3456899999999988 57788999999999764
Q ss_pred CCcEEEEEeecCccceeEEEEEeCC--eEEEee---CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCC
Q 044557 263 DGNILVVGALRGHTKSILCMAVVSD--LVCSGS---ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSD 337 (362)
Q Consensus 263 ~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s---~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~ 337 (362)
. ....+. +...+.+++++++ ++++++ .|+.|++|+... .+.+..+..|. .+.+++|+|++.
T Consensus 191 ~----~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~--~~~~~~~~~~~-~~~~~~~s~dg~------ 256 (391)
T 1l0q_A 191 S----VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT--NKITARIPVGP-DPAGIAVTPDGK------ 256 (391)
T ss_dssp E----EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT--TEEEEEEECCS-SEEEEEECTTSS------
T ss_pred e----EEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC--CeEEEEEecCC-CccEEEEccCCC------
Confidence 2 222232 4557888888754 676666 799999999643 45677777765 478888876643
Q ss_pred CceEEEecCCCCcEEEEeccc
Q 044557 338 TSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 338 ~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.++++++.|+.|++||+..
T Consensus 257 --~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 257 --KVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp --EEEEEETTTTEEEEEETTT
T ss_pred --EEEEEcCCCCEEEEEECCC
Confidence 3557889999999999863
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=202.37 Aligned_cols=233 Identities=15% Similarity=0.160 Sum_probs=170.5
Q ss_pred eecceeEEEEEcCce--eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC
Q 044557 66 VGKGAVKSLVVLADK--LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD 143 (362)
Q Consensus 66 ~~~~~v~~i~~~~~~--l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 143 (362)
.|...|.++.++++. |++++.+ .+++|+++.... . ...+..
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~-------~-----------------------------~~~~~~ 59 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAH-------I-----------------------------MSQEMR 59 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEE-------E-----------------------------EEEECS
T ss_pred cCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcce-------e-----------------------------eeeecC
Confidence 356789999998764 5555544 589999753210 0 011223
Q ss_pred ceeEEEEecCCCEE-EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCC-CCcce
Q 044557 144 AVSALALTKDETLL-YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPG-NKKHS 221 (362)
Q Consensus 144 ~v~~~~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~-~~~~~ 221 (362)
.+..+++.++++.+ ++++.|++|++||..+++++..+. +...|.+++++++..++ +.|+.|++||+.+. .....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITD 135 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSC
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEE
Confidence 46778888888877 567788999999999999888775 66789999999875333 35889999999876 32222
Q ss_pred eehhhhccccceeEEEEecCCCEEEE--EcCCCcEEEEeccCCCC-----------cEEE-EEeecCccceeEEEEEeCC
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYS--GACDRSIIVWEKEEDDG-----------NILV-VGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s--~~~d~~i~~wd~~~~~~-----------~~~~-~~~~~~h~~~v~~~~~~~~ 287 (362)
+.. +...+++++ .+++. |+.||.|++||+..... .... +..+.+|...|.+++|+++
T Consensus 136 ----~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~ 206 (355)
T 3vu4_A 136 ----DIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK 206 (355)
T ss_dssp ----CEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT
T ss_pred ----ecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC
Confidence 222 444566777 56665 68999999999976330 0001 3567899999999999865
Q ss_pred --eEEEeeCCCc-EEEeeCCCCceeeeeEec-C-CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 288 --LVCSGSADKT-IRIWRGIDRNYTCLAVLE-G-HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 288 --~~~s~s~D~~-i~~W~~~~~~~~~~~~l~-~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+++|++.|++ |++||.. ..+++..+. | |...|.+++|+|++ .+|++||.|++|++||+..+
T Consensus 207 g~~l~s~s~d~~~v~iwd~~--~~~~~~~~~~g~h~~~v~~~~~s~~~---------~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 207 SDMVATCSQDGTIIRVFKTE--DGVLVREFRRGLDRADVVDMKWSTDG---------SKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp SSEEEEEETTCSEEEEEETT--TCCEEEEEECTTCCSCEEEEEECTTS---------CEEEEEETTCEEEEEESSCC
T ss_pred CCEEEEEeCCCCEEEEEECC--CCcEEEEEEcCCCCCcEEEEEECCCC---------CEEEEEECCCEEEEEEccCC
Confidence 8999999999 9999964 456788888 6 99999999998764 46999999999999999654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-26 Score=198.69 Aligned_cols=159 Identities=11% Similarity=0.062 Sum_probs=118.5
Q ss_pred eeecCceeEEEEec---CCCEEEEEECCCcEEEEECCCceEEEeeeccC--cccEEEEEEcCCCcE-------------E
Q 044557 139 VHHVDAVSALALTK---DETLLYSVSWDRTIKIWRTSDFKCLESITNAH--DDAINAVALSDDGDV-------------Y 200 (362)
Q Consensus 139 ~~h~~~v~~~~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~-------------~ 200 (362)
..|...+..++|+| ++.+|++++.|++|+|||++++++++++...| ...+.+++|+|+|.+ +
T Consensus 175 ~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 175 FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESES 254 (356)
T ss_dssp EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------
T ss_pred ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence 35777888899988 77999999999999999999999999886332 236778899999873 4
Q ss_pred EEeCCCeEEEEeCCCCCCcceeehh-hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee
Q 044557 201 TGSADKKIKVWRRSPGNKKHSLVDV-LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI 279 (362)
Q Consensus 201 s~~~dg~i~iw~~~~~~~~~~~~~~-~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v 279 (362)
+|+.|++|++||..++.....+... ..+|...+.+. +.++..+++|+.|++|++||+.+++ .+.++.+|...+
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk----~l~tL~gH~~~v 328 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQ----CTALLPPVSDQH 328 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCS----EEEEECCC--CC
T ss_pred ccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCc----EEEEecCCCCCe
Confidence 6789999999999877533221111 23555554333 3448899999999999999998754 355678898776
Q ss_pred E-EEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 280 L-CMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 280 ~-~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
. +++|+++ +|+|||.|++||||+.
T Consensus 329 vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 5 5889876 8999999999999983
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=211.47 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=153.1
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC----------ceeEEEecCCcEEEEecCCC
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA----------DKLFSAHQDHKIRVWKINNQ 98 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~----------~~l~s~~~dg~i~~w~~~~~ 98 (362)
+.+|++|+.|++||+||+.......... ...+..|.+.|.++.+.+ ..|++++.|++|++||+...
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~----~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHV----LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEE----ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeee----ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 5689999999999999986543111100 011234677888888853 35999999999999998643
Q ss_pred CCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEEECCCcEEEEECCCceEE
Q 044557 99 EPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCL 177 (362)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~ 177 (362)
.+ ......|...+.+++|+|++. +|++|+.|++|++||+++++..
T Consensus 177 ~~----------------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~ 222 (393)
T 4gq1_A 177 GP----------------------------------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA 222 (393)
T ss_dssp EE----------------------------------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred ce----------------------------------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccc
Confidence 21 112346788999999999874 8999999999999999876543
Q ss_pred Eee------------------------eccCcccEEEEEEc-CCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccc
Q 044557 178 ESI------------------------TNAHDDAINAVALS-DDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS 231 (362)
Q Consensus 178 ~~~------------------------~~~h~~~v~~v~~~-~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~ 231 (362)
... ..+|...+.++.|+ |++. +++++.|+++++||+..+.....+ ..|..
T Consensus 223 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l----~~~~~ 298 (393)
T 4gq1_A 223 EENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI----SDSTM 298 (393)
T ss_dssp --------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------
T ss_pred ccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE----eeecC
Confidence 221 12467778889986 6776 889999999999998765432211 12222
Q ss_pred cee------------------EEEEec--CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eE
Q 044557 232 GIN------------------ALALSC--DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LV 289 (362)
Q Consensus 232 ~v~------------------~i~~s~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~ 289 (362)
.+. ...++| ++.++++|+.|++|++||..++.... ...+|...|.+++|+++ +|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~----~~~~~~~~V~svafspdG~~L 374 (393)
T 4gq1_A 299 KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS----IPIQLGMPIVDFCWHQDGSHL 374 (393)
T ss_dssp -----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE----EEEECSSCEEEEEECTTSSEE
T ss_pred ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE----EecCCCCcEEEEEEcCCCCEE
Confidence 222 223333 44577888999999999998765432 24467889999999875 88
Q ss_pred EEeeCCCcEEEee
Q 044557 290 CSGSADKTIRIWR 302 (362)
Q Consensus 290 ~s~s~D~~i~~W~ 302 (362)
|+++.|| +.+|+
T Consensus 375 A~as~~G-v~lvr 386 (393)
T 4gq1_A 375 AIATEGS-VLLTR 386 (393)
T ss_dssp EEEESSE-EEEEE
T ss_pred EEEeCCC-eEEEE
Confidence 9988765 66665
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-23 Score=189.76 Aligned_cols=290 Identities=14% Similarity=0.151 Sum_probs=201.6
Q ss_pred ccceeeecccCccceeeeEec--CcEE-EEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFL-YTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l-~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
..+++.++.+|.. +.+++++ ++++ ++++.|++|++||+.+... ...+ . ....+.++.+.++ .++
T Consensus 21 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~--~~~~-------~-~~~~v~~~~~spdg~~l~ 89 (391)
T 1l0q_A 21 SNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATV-------P-AGSSPQGVAVSPDGKQVY 89 (391)
T ss_dssp TTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEE-------E-CSSSEEEEEECTTSSEEE
T ss_pred CCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeE--EEEE-------E-CCCCccceEECCCCCEEE
Confidence 4567778888765 7999994 6655 7888999999999865331 1111 1 1236777878754 465
Q ss_pred E-EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE-EEE
Q 044557 83 S-AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL-YSV 160 (362)
Q Consensus 83 s-~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~ 160 (362)
. ++.++.|++||+..++. .. ...+...+.+++|+|+++.| +++
T Consensus 90 ~~~~~~~~v~v~d~~~~~~-------~~----------------------------~~~~~~~~~~~~~s~dg~~l~~~~ 134 (391)
T 1l0q_A 90 VTNMASSTLSVIDTTSNTV-------AG----------------------------TVKTGKSPLGLALSPDGKKLYVTN 134 (391)
T ss_dssp EEETTTTEEEEEETTTTEE-------EE----------------------------EEECSSSEEEEEECTTSSEEEEEE
T ss_pred EEECCCCEEEEEECCCCeE-------EE----------------------------EEeCCCCcceEEECCCCCEEEEEe
Confidence 4 45679999999875421 00 01233467899999999977 678
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
+.|+.|++||+.+++.+..+. .+ ..+.+++|+|++. + ++++.|+.|++||+.++.... .+ .+...+.+++|
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~-~~~~~~~~~~~ 207 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVS-VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID----TV-KVEAAPSGIAV 207 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EE-ECSSEEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEe-cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE----EE-ecCCCccceEE
Confidence 889999999999998887765 23 4578999999996 4 577889999999998764322 22 24567899999
Q ss_pred ecCCCEEEEEc---CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eE-EEeeCCCcEEEeeCCCCceeeee
Q 044557 239 SCDGSVLYSGA---CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LV-CSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 239 s~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~-~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
+|++++|++++ .++.|++||+.+.+ .+..+..|. .+.+++++++ .+ ++++.|+.|++|+.. ..+.++
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~----~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~--~~~~~~ 280 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNK----ITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA--TNTITA 280 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTE----EEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT--TTEEEE
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCCCe----EEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC--CCcEEE
Confidence 99999999888 68999999997542 233455554 4678888754 44 788999999999964 356677
Q ss_pred EecCCCCcEE---EEEeeecCCccC-----CCC--------CceEEEecCCCCcEEEEecc
Q 044557 313 VLEGHRGPVK---CLAAAIDNDRCD-----SSD--------TSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 313 ~l~~h~~~v~---~~~~~~~~~~~~-----~~~--------~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+..|..+.. .+.+.|++.... .+. ....+.+.+.|.++++|++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 341 (391)
T 1l0q_A 281 TMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFG 341 (391)
T ss_dssp EEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECS
T ss_pred EEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECC
Confidence 7777765432 123332211100 000 01457788889999999984
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-23 Score=187.23 Aligned_cols=195 Identities=13% Similarity=0.023 Sum_probs=146.1
Q ss_pred eeecCceeEEEEecCCCEEEEEECCC---cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCC--eEEEE
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDR---TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADK--KIKVW 211 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg--~i~iw 211 (362)
..|...+.+++|+||++.|++++.|+ .|++||+.++++.. +. .|...+.+++|+|+|+ ++ +++.|+ .|.+|
T Consensus 175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~ 252 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 252 (415)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-ee-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEE
Confidence 35778899999999999999999885 99999999887654 33 5777899999999997 55 566665 49999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CC--cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DR--SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD- 287 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 287 (362)
|+.++.. ..+..|...+.+++|+|||++|+.++. ++ .|.+||+..+.. ..+..|...+.+++|+++
T Consensus 253 d~~~~~~-----~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdG 322 (415)
T 2hqs_A 253 DLASGQI-----RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQNQDADVSSDG 322 (415)
T ss_dssp ETTTCCE-----EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSEEEEEEECTTS
T ss_pred ECCCCCE-----EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----EEEecCCCcccCeEECCCC
Confidence 9887542 233457788999999999999998876 45 577778765431 224456677888898865
Q ss_pred -eEEEeeCC---CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCC---cEEEEeccc
Q 044557 288 -LVCSGSAD---KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC---DIKVWQISF 358 (362)
Q Consensus 288 -~~~s~s~D---~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~---~i~~W~~~~ 358 (362)
+++.++.+ ..|++|+..... ...+..|. .+.+++|+|++ .+|++++.|+ .|++||+..
T Consensus 323 ~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~~-~~~~~~~spdg---------~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 323 KFMVMVSSNGGQQHIAKQDLATGG---VQVLSSTF-LDETPSLAPNG---------TMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp SEEEEEEECSSCEEEEEEETTTCC---EEECCCSS-SCEEEEECTTS---------SEEEEEEEETTEEEEEEEETTS
T ss_pred CEEEEEECcCCceEEEEEECCCCC---EEEecCCC-CcCCeEEcCCC---------CEEEEEEcCCCccEEEEEECCC
Confidence 67776654 589999965432 23466665 89999998765 3577777776 799999864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-23 Score=190.60 Aligned_cols=245 Identities=13% Similarity=0.117 Sum_probs=173.7
Q ss_pred eEEEEEcCc-e-eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEE
Q 044557 71 VKSLVVLAD-K-LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSAL 148 (362)
Q Consensus 71 v~~i~~~~~-~-l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 148 (362)
+.++.+.++ . +++++.|+.|++||+..++.. ...+ ...+.+|...+.++
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~-------~~~~----------------------~~~~~~~~~~v~~~ 175 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV-------RLSP----------------------PEKYKKKLGFVETI 175 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE-------EECC----------------------CHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe-------eecC----------------------cccccccCCceeEE
Confidence 345666543 3 566677889999998765421 0000 00112467789999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 149 ALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 149 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
+|+|+++++++++.|+.|++||+++++.+..+. .|...+.+++|+|++. + ++++.|+.|++||+.++... ..+
T Consensus 176 ~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~----~~~ 250 (433)
T 3bws_A 176 SIPEHNELWVSQMQANAVHVFDLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI----RKT 250 (433)
T ss_dssp EEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE----EEC
T ss_pred EEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE----EEe
Confidence 999999999999999999999999988877775 6888999999999987 5 35558999999999876432 222
Q ss_pred hccccceeEEEEecCCCEEEEEc--------CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCC
Q 044557 227 ERHNSGINALALSCDGSVLYSGA--------CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSAD 295 (362)
Q Consensus 227 ~~h~~~v~~i~~s~~~~~l~s~~--------~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D 295 (362)
. +...+.+++|+|+|++|++++ .|+.|++||+.+++ . ... ..|...+.+++++++ ++++++.|
T Consensus 251 ~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~--~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~ 324 (433)
T 3bws_A 251 D-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK--L--IDT-IGPPGNKRHIVSGNTENKIYVSDMCC 324 (433)
T ss_dssp C-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--E--EEE-EEEEECEEEEEECSSTTEEEEEETTT
T ss_pred c-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc--E--Eee-ccCCCCcceEEECCCCCEEEEEecCC
Confidence 2 244589999999999999988 58999999997542 1 111 245567888888754 56788999
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCC------CceEEEecCCCCcEEEEeccc
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSD------TSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~------~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+.|++|+... .+.+..+. |...+.+++|+|++....... ...++++|+.||.|++||+..
T Consensus 325 ~~v~v~d~~~--~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 325 SKIEVYDLKE--KKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp TEEEEEETTT--TEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred CEEEEEECCC--CcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 9999999643 44555554 778899999987754210000 011223334478999999853
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-22 Score=181.11 Aligned_cols=262 Identities=13% Similarity=0.052 Sum_probs=189.7
Q ss_pred cccee--eecccCccceeeeEec----------------CcEEEEecCC------CeEEEeecCCCCcccceeeecccee
Q 044557 8 DHHCL--TTLKGHNSYVSSLALA----------------GKFLYTGSSD------NEVRSWDCNTFSSELDQEFLSNNNI 63 (362)
Q Consensus 8 ~~~~~--~tl~gH~~~V~~l~~~----------------~~~l~t~s~D------g~i~vWd~~~~~~~~~~~~~~~~~~ 63 (362)
..+++ .+|.+|...+..+++. +..++.++.+ ++|++||+.... ...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~----------~~~ 173 (415)
T 2hqs_A 104 PGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN----------QFV 173 (415)
T ss_dssp TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS----------CEE
T ss_pred CCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC----------CEE
Confidence 34555 5689999988887653 5667666654 799999986421 112
Q ss_pred EEeecceeEEEEEcCc--eeEEEecCC---cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEE
Q 044557 64 VAVGKGAVKSLVVLAD--KLFSAHQDH---KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTW 138 (362)
Q Consensus 64 ~~~~~~~v~~i~~~~~--~l~s~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (362)
+..+...+.++.++++ .|++++.++ .|++||+..++.. .+
T Consensus 174 l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-----------------------------------~l 218 (415)
T 2hqs_A 174 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-----------------------------------QV 218 (415)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-----------------------------------EE
T ss_pred EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-----------------------------------Ee
Confidence 2335667888888765 488888775 9999998754310 11
Q ss_pred eeecCceeEEEEecCCCEEE-EEECCCc--EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeC-CC--eEEEE
Q 044557 139 VHHVDAVSALALTKDETLLY-SVSWDRT--IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSA-DK--KIKVW 211 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~-s~s~d~~--i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~-dg--~i~iw 211 (362)
..|...+.+++|+||++.|+ +++.|+. |++||+.+++.. .+. .|...+.+++|+|+|+ ++.++. ++ .|.+|
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc-CCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 23556788999999999877 6666665 999999887763 343 5778899999999997 666664 45 67777
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC---CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD---RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD- 287 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 287 (362)
|+.++... .+..+...+.+++|+|||++|++++.+ ..|++||+.+++ . ..+..|. .+.+++|+++
T Consensus 297 d~~~~~~~-----~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~--~---~~l~~~~-~~~~~~~spdg 365 (415)
T 2hqs_A 297 NINGGAPQ-----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--V---QVLSSTF-LDETPSLAPNG 365 (415)
T ss_dssp ETTSSCCE-----ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--E---EECCCSS-SCEEEEECTTS
T ss_pred ECCCCCEE-----EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC--E---EEecCCC-CcCCeEEcCCC
Confidence 88765421 123456678899999999999988865 589999998643 2 2344454 7888899865
Q ss_pred -eEEEeeCCC---cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 288 -LVCSGSADK---TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 288 -~~~s~s~D~---~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
++++++.|+ .|.+|+.. ......+.+|.+.|.+++|+|..
T Consensus 366 ~~l~~~s~~~~~~~l~~~d~~---g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 366 TMVIYSSSQGMGSVLNLVSTD---GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp SEEEEEEEETTEEEEEEEETT---SCCEEECCCSSSEEEEEEECCCC
T ss_pred CEEEEEEcCCCccEEEEEECC---CCcEEEeeCCCCCCcCCcccccc
Confidence 788888777 79999864 23467788999999999999863
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-21 Score=168.86 Aligned_cols=278 Identities=15% Similarity=0.240 Sum_probs=174.9
Q ss_pred EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC-CcEEEEecCCCCCCccccee
Q 044557 31 FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD-HKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 31 ~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d-g~i~~w~~~~~~~~~~~~~~ 107 (362)
.+++++.|+.|++||+.. ....... ....+...+..+.+.++ .|++++.+ +.|++|+++...... ..
T Consensus 7 l~~~~~~~~~v~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---~~ 76 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNH-EGALTLT------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---TF 76 (343)
T ss_dssp EEEEEGGGTEEEEEEECT-TSCEEEE------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---EE
T ss_pred EEEeCCCCCeEEEEEECC-CCcEEEe------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---ee
Confidence 455558899999999853 1111100 00112345666777654 48888876 999999986221100 00
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC-CCcEEEEECC---CceEEEeeecc
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW-DRTIKIWRTS---DFKCLESITNA 183 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-d~~i~iwd~~---~~~~~~~~~~~ 183 (362)
+.. ......+..++|+|++++|++++. ++.|.+||+. ..+.+..+.
T Consensus 77 ~~~----------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-- 126 (343)
T 1ri6_A 77 AAE----------------------------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-- 126 (343)
T ss_dssp EEE----------------------------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--
T ss_pred ccc----------------------------cccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--
Confidence 000 011236788999999998877665 8899999994 333444332
Q ss_pred CcccEEEEEEcCCCc-EEEEe-CCCeEEEEeCCCCCCcceee--hhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEe
Q 044557 184 HDDAINAVALSDDGD-VYTGS-ADKKIKVWRRSPGNKKHSLV--DVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWE 258 (362)
Q Consensus 184 h~~~v~~v~~~~~~~-~~s~~-~dg~i~iw~~~~~~~~~~~~--~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd 258 (362)
....+.+++|+|+++ +++++ .++.|.+||+.+........ .........+..++|+|+|++|+++ ..++.|++|+
T Consensus 127 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~ 206 (343)
T 1ri6_A 127 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 206 (343)
T ss_dssp CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 234578899999997 66665 89999999997622111111 1111123467889999999977655 4899999999
Q ss_pred ccCCCCcEEEEEee---c-Cc--cceeEEEEEeCC--e-EEEeeCCCcEEEeeCC--CCceeeeeEecCCCCcEEEEEee
Q 044557 259 KEEDDGNILVVGAL---R-GH--TKSILCMAVVSD--L-VCSGSADKTIRIWRGI--DRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 259 ~~~~~~~~~~~~~~---~-~h--~~~v~~~~~~~~--~-~~s~s~D~~i~~W~~~--~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
+............. . ++ ...+..++++++ + +++++.|+.|++|+.. ......+..+..+.. +..++|+
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s 285 (343)
T 1ri6_A 207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVD 285 (343)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEEC
T ss_pred ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEEC
Confidence 96433332222222 2 11 234567888764 4 4467789999999975 234555666665555 8888887
Q ss_pred ecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|++. .+++++..|+.|++|++.
T Consensus 286 ~dg~--------~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 286 HSGK--------YLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TTSS--------EEEEECTTTCEEEEEEEE
T ss_pred CCCC--------EEEEecCCCCeEEEEEEc
Confidence 6543 345555578999999765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-21 Score=182.00 Aligned_cols=276 Identities=11% Similarity=0.141 Sum_probs=193.5
Q ss_pred ceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEec--C
Q 044557 21 YVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKI--N 96 (362)
Q Consensus 21 ~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~--~ 96 (362)
++..+...+.++++++.|++|++||..+... ...+ ..+.. +..+.++++ .|++++.|++|++||+ .
T Consensus 141 ~~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~--~~~i-------~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~ 210 (543)
T 1nir_A 141 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKI--VKVI-------DTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAK 210 (543)
T ss_dssp CCSCCCGGGEEEEEEGGGTEEEEEETTTCCE--EEEE-------ECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred cccccCCCCEEEEEEcCCCeEEEEECCCceE--EEEE-------ecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 3444555678899999999999999876431 1111 11222 455666654 6999999999999998 3
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec----CCCEEEEEE-CCCcEEEEEC
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK----DETLLYSVS-WDRTIKIWRT 171 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~s-~d~~i~iwd~ 171 (362)
+.. .+..+ .+...+..++|+| |+++|++++ .+++|.+||.
T Consensus 211 t~~-------~~~~i----------------------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 211 EPT-------KVAEI----------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp SCE-------EEEEE----------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred CCc-------EEEEE----------------------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec
Confidence 221 01111 1234568899999 999999988 5899999999
Q ss_pred CCceEEEeeecc---------C-cccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 172 SDFKCLESITNA---------H-DDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 172 ~~~~~~~~~~~~---------h-~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
.+++++..+... | ...+..+.++|++. +++...+++|.+||..+..... ...+ .+...+..+.|+
T Consensus 256 ~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i-~~~~~~~~~~~s 332 (543)
T 1nir_A 256 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSI-GAAPFLHDGGWD 332 (543)
T ss_dssp TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEE-ECCSSCCCEEEC
T ss_pred cccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEe-ccCcCccCceEC
Confidence 999888776421 2 22688999999775 5677889999999998754322 1111 245567789999
Q ss_pred cCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecC----ccceeEEEEEeCC---eEEEee-CCCcEEEeeCCCC----
Q 044557 240 CDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRG----HTKSILCMAVVSD---LVCSGS-ADKTIRIWRGIDR---- 306 (362)
Q Consensus 240 ~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~---~~~s~s-~D~~i~~W~~~~~---- 306 (362)
|+|++++++ ..+++|.+||..+++ ++..+.. |.+....+ +.++ .++|++ .|++|++|+....
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~tg~----l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~ 407 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKDRR----LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 407 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred CCCCEEEEEecCCCeEEEEECCCCe----EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch
Confidence 999987755 468999999998643 2333332 55444333 2332 577775 6899999996431
Q ss_pred -ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC-------CCCcEEEEeccc
Q 044557 307 -NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS-------LDCDIKVWQISF 358 (362)
Q Consensus 307 -~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s-------~D~~i~~W~~~~ 358 (362)
.+++++++.+|...+..++++|++. +|++++ .|++|.+||+..
T Consensus 408 ~~~~~v~~l~~~g~~~~~v~~~pdg~---------~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 408 YAWKKVAELQGQGGGSLFIKTHPKSS---------HLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp TBTSEEEEEECSCSCCCCEECCTTCC---------EEEECCTTCSSHHHHTCEEEEETTC
T ss_pred hcCeEEEEEEcCCCCceEEEcCCCCC---------cEEEecCCCCCcccCceEEEEECCC
Confidence 2788999999999988899987654 577776 378999999963
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-20 Score=176.76 Aligned_cols=305 Identities=12% Similarity=0.085 Sum_probs=198.7
Q ss_pred ccceeeecccCccceeeeEe--cCcEEEEecCCCeEEEeec--CCCCcccceeeeccceeEEeecceeEEEEEcC----c
Q 044557 8 DHHCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDC--NTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA----D 79 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~----~ 79 (362)
..+++.++..+.. +..+.+ ++++|++++.|++|++||+ .+.. .... +.. ......+.+++ +
T Consensus 168 t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~~~~-------i~~-g~~p~~va~sp~~~~d 236 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--KVAE-------IKI-GIEARSVESSKFKGYE 236 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--EEEE-------EEC-CSEEEEEEECCSTTCT
T ss_pred CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc--EEEE-------Eec-CCCcceEEeCCCcCCC
Confidence 3567788873333 778878 4889999999999999998 4422 1111 111 23456777765 4
Q ss_pred --eeEEEe-cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC-ceeEEEEecCCC
Q 044557 80 --KLFSAH-QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD-AVSALALTKDET 155 (362)
Q Consensus 80 --~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~ 155 (362)
.+++++ .+++|.+||..+.+.. ..++..+.. ......|.+ .+..+.++|++.
T Consensus 237 g~~l~v~~~~~~~v~v~D~~t~~~~-------~~i~~~g~~-----------------~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 237 DRYTIAGAYWPPQFAIMDGETLEPK-------QIVSTRGMT-----------------VDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp TTEEEEEEEESSEEEEEETTTCCEE-------EEEECCEEC-----------------SSSCCEESCCCEEEEEECSSSS
T ss_pred CCEEEEEEccCCeEEEEeccccccc-------eeecccCcc-----------------cCccccccCCceEEEEECCCCC
Confidence 477877 4899999998654421 111100000 000012333 788999999776
Q ss_pred -EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEE-EeCCCeEEEEeCCCCCCcceeehhhhccccc
Q 044557 156 -LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYT-GSADKKIKVWRRSPGNKKHSLVDVLERHNSG 232 (362)
Q Consensus 156 -~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~ 232 (362)
++++...++.|.+||+.+.+.+......+...+..++|+|+|+ +++ +..+++|.+||..+++....+......|...
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred EEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 5666778899999999876544311223556678899999998 554 4568999999998875433222111225443
Q ss_pred eeEEEEecC-CCEEEEEc-CCCcEEEEeccCCC---CcEEEEEeecCccceeEEEEEeCC--eEEEee-------CCCcE
Q 044557 233 INALALSCD-GSVLYSGA-CDRSIIVWEKEEDD---GNILVVGALRGHTKSILCMAVVSD--LVCSGS-------ADKTI 298 (362)
Q Consensus 233 v~~i~~s~~-~~~l~s~~-~d~~i~~wd~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s-------~D~~i 298 (362)
...+ ++|+ +..++++. .|++|.+||..+.. .....+..+++|...+..++++++ .+.+++ .+++|
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 451 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCE
T ss_pred Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceE
Confidence 3333 5777 55666665 58999999997622 113456778888888888888865 788776 27899
Q ss_pred EEeeCCCCceeee-eE--------ecCCCCcEEEEEeeecCCccCCCCCceEEEec----CCCCcEEEEeccc
Q 044557 299 RIWRGIDRNYTCL-AV--------LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG----SLDCDIKVWQISF 358 (362)
Q Consensus 299 ~~W~~~~~~~~~~-~~--------l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~----s~D~~i~~W~~~~ 358 (362)
.+||..... .. .. +..|...+..++|+|+++. +++|. +.|++|.|||...
T Consensus 452 ~v~d~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~--------~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 452 AVFDLKNLD--AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE--------VWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp EEEETTCTT--SCCEEECHHHHHCCCSSCCEEEEEEECSSSSE--------EEEEEECCTTSCCEEEEEETTT
T ss_pred EEEECCCCC--CCeEEeechhhcccCCCCCceEeccCCCCCCE--------EEEEeecCCCCCCeEEEEECCC
Confidence 999975332 22 22 3466789999999887653 34332 3589999999863
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-19 Score=159.89 Aligned_cols=277 Identities=11% Similarity=0.144 Sum_probs=177.2
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec-CCcEEEEecCCCCCCcccc
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ-DHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~-dg~i~~w~~~~~~~~~~~~ 105 (362)
+..+++++.+++|++||..+..... . +..+.... .+.+.++ .+++++. ++.|.+||+..+...
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~--~-------~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~---- 75 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILN--Q-------ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK---- 75 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEE--E-------EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----
T ss_pred CEEEEEecCCCeEEEEeCcccceee--e-------EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----
Confidence 3468899999999999987643211 1 11223334 6677654 4666665 889999998754310
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC---cEEEEECCCceEEEeeec
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR---TIKIWRTSDFKCLESITN 182 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~ 182 (362)
. .....+.....+++|+|++++|+++..++ .|.+||+.+++.+..+.
T Consensus 76 --~---------------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~- 125 (331)
T 3u4y_A 76 --V---------------------------VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP- 125 (331)
T ss_dssp --E---------------------------EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-
T ss_pred --E---------------------------EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-
Confidence 0 01112333444489999999999655553 89999999998877664
Q ss_pred cCcccEEEEEEcCCCc-EEE-EeCCCe-EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE-EcCCCcEEEEe
Q 044557 183 AHDDAINAVALSDDGD-VYT-GSADKK-IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS-GACDRSIIVWE 258 (362)
Q Consensus 183 ~h~~~v~~v~~~~~~~-~~s-~~~dg~-i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~~d~~i~~wd 258 (362)
+.....+++|+|+|+ +++ ...++. |.+|++...................+..++|+|||++|+. +..++.|++||
T Consensus 126 -~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 204 (331)
T 3u4y_A 126 -IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILE 204 (331)
T ss_dssp -CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred -CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 334568999999996 554 455578 9999987543221111111123445789999999996654 45689999999
Q ss_pred ccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCC----CCc---EEEEEeee
Q 044557 259 KEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGH----RGP---VKCLAAAI 328 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h----~~~---v~~~~~~~ 328 (362)
+.+.+. ...+..+.. ...+..++++++ ++++...++.|.+|+........+..+..+ ... ...++|+|
T Consensus 205 ~~~~~~-~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 282 (331)
T 3u4y_A 205 TQNPEN-ITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK 282 (331)
T ss_dssp CSSTTS-CEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT
T ss_pred CCCCcc-cceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC
Confidence 986543 111233333 345677888765 345556788999999754443334443322 222 23467776
Q ss_pred cCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 329 DNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 329 ~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
++. +++++++.++.|++||+..+.
T Consensus 283 dg~--------~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 283 TET--------KLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TSS--------EEEEEETTTTEEEEEETTSCE
T ss_pred CCC--------EEEEecCCCCcEEEEEecCCc
Confidence 543 455677778899999997664
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-19 Score=157.68 Aligned_cols=276 Identities=15% Similarity=0.222 Sum_probs=174.4
Q ss_pred cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce-eEEEec---CCcEEEEecCCCCCCcccceeeeec
Q 044557 36 SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK-LFSAHQ---DHKIRVWKINNQEPDHQKYTRLATL 111 (362)
Q Consensus 36 s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~ 111 (362)
+.++.|.+|++........... ...+......+.+.++. |++++. ++.|.+|++..+.. ..+
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~------~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~-----~~~--- 78 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDG------LLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTA-----HKL--- 78 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEE------EEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEE-----EEE---
T ss_pred CCCCCEEEEEEcCCCCeEEEee------eeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcE-----EEe---
Confidence 4567888988765332221100 01122344556666553 777665 58999999854321 000
Q ss_pred cCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEEECCC---ceEEEeeecc----
Q 044557 112 PTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIWRTSD---FKCLESITNA---- 183 (362)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~---~~~~~~~~~~---- 183 (362)
.....+...+..++|+|++++|++++ .++.|++|++.. .+.+..+...
T Consensus 79 ------------------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p 134 (347)
T 3hfq_A 79 ------------------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGP 134 (347)
T ss_dssp ------------------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCS
T ss_pred ------------------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCC
Confidence 11123556778999999999988888 779999999862 2333333211
Q ss_pred ----CcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCcceeehhhhc-cccceeEEEEecCCCEEEE-EcCCCcEEE
Q 044557 184 ----HDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHSLVDVLER-HNSGINALALSCDGSVLYS-GACDRSIIV 256 (362)
Q Consensus 184 ----h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~~~~~l~s-~~~d~~i~~ 256 (362)
+...+.+++|+|+|+++ +...++.|.+|++...... ........ ....+..++|+|||++|++ +..++.|++
T Consensus 135 ~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 135 RPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL-SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp STTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE-EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence 12248889999999854 4456889999999832211 11111111 2235678999999996665 567889999
Q ss_pred EeccCCCCcEEEEEeecCcc------ceeEEEEEeCC--eE-EEeeCCCcEEEeeCCCC-ceeeeeEecCCCCcEEEEEe
Q 044557 257 WEKEEDDGNILVVGALRGHT------KSILCMAVVSD--LV-CSGSADKTIRIWRGIDR-NYTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 257 wd~~~~~~~~~~~~~~~~h~------~~v~~~~~~~~--~~-~s~s~D~~i~~W~~~~~-~~~~~~~l~~h~~~v~~~~~ 326 (362)
|++....+.......+.... ..+..++++++ ++ ++...++.|.+|+.... ....+..+..|...+..++|
T Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 3hfq_A 214 LKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL 293 (347)
T ss_dssp EEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE
T ss_pred EEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE
Confidence 99875444433333333222 34778888865 44 67778999999996422 34566677777778899999
Q ss_pred eecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 327 AIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 327 ~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+|+++ ++++++..++.|.+|+++.
T Consensus 294 spdg~--------~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 294 DPTEA--------FVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp CTTSS--------EEEEEETTTTEEEEEEECT
T ss_pred CCCCC--------EEEEEEcCCCcEEEEEEeC
Confidence 87653 3444445568999997653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-20 Score=180.42 Aligned_cols=285 Identities=9% Similarity=0.092 Sum_probs=190.1
Q ss_pred ccceeeeEec--CcEEEEecC-CC-----eEEEeecCCCCcccceeeeccc---eeEE------------eecceeEEEE
Q 044557 19 NSYVSSLALA--GKFLYTGSS-DN-----EVRSWDCNTFSSELDQEFLSNN---NIVA------------VGKGAVKSLV 75 (362)
Q Consensus 19 ~~~V~~l~~~--~~~l~t~s~-Dg-----~i~vWd~~~~~~~~~~~~~~~~---~~~~------------~~~~~v~~i~ 75 (362)
...|.+++|+ |++|++++. |+ +|++||+.+............. ..+. .+...+..+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 4568888884 889999998 88 9999998764321110000000 0000 0002356677
Q ss_pred EcCc--eeEEEecCCcEEEEecCCC---CCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE
Q 044557 76 VLAD--KLFSAHQDHKIRVWKINNQ---EPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL 150 (362)
Q Consensus 76 ~~~~--~l~s~~~dg~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 150 (362)
+++| .|++++. +.|.+|++..+ ... . +..|...+.+++|
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-----~------------------------------l~~~~~~~~~~~~ 159 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-----Q------------------------------LTHGEGFATDAKL 159 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCC-----B------------------------------CCCSSSCEEEEEE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEE-----E------------------------------cccCCcccccccC
Confidence 7765 3666664 99999998764 210 0 0124456889999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceEEEeeeccCccc----------------EEEEEEcCCCc-EEEEeCCC-------
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDA----------------INAVALSDDGD-VYTGSADK------- 206 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~----------------v~~v~~~~~~~-~~s~~~dg------- 206 (362)
+|||++|+.++ ++.|++||+.+++...... .+... +..++|+|+|+ +++++.|+
T Consensus 160 SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~ 237 (741)
T 2ecf_A 160 SPKGGFVSFIR-GRNLWVIDLASGRQMQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQK 237 (741)
T ss_dssp CTTSSEEEEEE-TTEEEEEETTTTEEEECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEE
T ss_pred CCCCCEEEEEe-CCcEEEEecCCCCEEEecc-CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEe
Confidence 99999999887 5699999999887655332 23222 36799999997 77776655
Q ss_pred --------------------------eEEEEeCCC-CCCcceeehhhhccccceeEEEEecCCCEEEEEcC-----CCcE
Q 044557 207 --------------------------KIKVWRRSP-GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-----DRSI 254 (362)
Q Consensus 207 --------------------------~i~iw~~~~-~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-----d~~i 254 (362)
.|.+||+.+ +.... + .....|...+..++| |||++|+.++. +..|
T Consensus 238 ~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~-~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i 314 (741)
T 2ecf_A 238 RYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW-I-DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL 314 (741)
T ss_dssp EEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE-E-CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred cCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE-e-cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence 788899877 64321 1 111246778999999 99999997754 5679
Q ss_pred EEEeccCCCCcEEEEEeecCccc----eeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEE-Eee
Q 044557 255 IVWEKEEDDGNILVVGALRGHTK----SILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL-AAA 327 (362)
Q Consensus 255 ~~wd~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~-~~~ 327 (362)
++||+.++.... + +..+.. .+..++|+++ ++++++.|+.++||..... .. ...+.+|...|..+ +|+
T Consensus 315 ~~~d~~~g~~~~-~---~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-~~-~~~l~~~~~~v~~~~~~s 388 (741)
T 2ecf_A 315 VEVTLASNQQRV-L---AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-GK-AAALTHGNWSVDELLAVD 388 (741)
T ss_dssp EEEETTTCCEEE-E---EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-SC-EEESCCSSSCEEEEEEEE
T ss_pred EEEECCCCceEE-E---EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-CC-eeeeeecceEEEeEeEEe
Confidence 999998654221 1 222222 3456777654 7889999999999975422 23 66788888888887 588
Q ss_pred ecCCccCCCCCceEEEecCCCC--cEEEEeccc
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDC--DIKVWQISF 358 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~--~i~~W~~~~ 358 (362)
|+++ .++++++.|+ +++||++..
T Consensus 389 ~dg~--------~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 389 EKAG--------LAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp TTTT--------EEEEEECSSCTTCBEEEEEET
T ss_pred CCCC--------EEEEEEeCCCCceEEEEEEEc
Confidence 7653 4566777777 899999853
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-18 Score=152.45 Aligned_cols=276 Identities=12% Similarity=0.168 Sum_probs=172.4
Q ss_pred cCccceeeeEec--CcEEEEecCC-CeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec-CCcE
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSD-NEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ-DHKI 90 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~D-g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~-dg~i 90 (362)
.|...+.+++++ +++|++++.+ +.|++|++.......... ..+.. ...+..+.+.++ .+++++. ++.|
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~i 108 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-----AESAL-PGSLTHISTDHQGQFVFVGSYNAGNV 108 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-----EEEEC-SSCCSEEEECTTSSEEEEEETTTTEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec-----ccccc-CCCCcEEEEcCCCCEEEEEecCCCeE
Confidence 467788889884 7778888776 999999986321111100 00111 124566667654 4666654 8899
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIW 169 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iw 169 (362)
.+|++..+. . ...... ......+.+++|+|+++++++++ .|+.|++|
T Consensus 109 ~~~d~~~~~-~---~~~~~~----------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 156 (343)
T 1ri6_A 109 SVTRLEDGL-P---VGVVDV----------------------------VEGLDGCHSANISPDNRTLWVPALKQDRICLF 156 (343)
T ss_dssp EEEEEETTE-E---EEEEEE----------------------------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred EEEECCCCc-c---cccccc----------------------------ccCCCCceEEEECCCCCEEEEecCCCCEEEEE
Confidence 999985211 0 000000 11223477889999999888877 89999999
Q ss_pred ECCC-ceEEE----eeeccCcccEEEEEEcCCCc-EEE-EeCCCeEEEEeCCCCCCccee---ehhhh-cc--ccceeEE
Q 044557 170 RTSD-FKCLE----SITNAHDDAINAVALSDDGD-VYT-GSADKKIKVWRRSPGNKKHSL---VDVLE-RH--NSGINAL 236 (362)
Q Consensus 170 d~~~-~~~~~----~~~~~h~~~v~~v~~~~~~~-~~s-~~~dg~i~iw~~~~~~~~~~~---~~~~~-~h--~~~v~~i 236 (362)
|+.+ ++... .+.......+..++|+|++. ++. +..++.|.+|++......... ...+. .+ ...+..+
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 9987 54322 22223345788999999997 544 458899999999642211111 11111 11 2356689
Q ss_pred EEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEee-CCCcEEEeeCC--CCceee
Q 044557 237 ALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGS-ADKTIRIWRGI--DRNYTC 310 (362)
Q Consensus 237 ~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s-~D~~i~~W~~~--~~~~~~ 310 (362)
+|+|+|++|+ ++..|+.|++|++.........+..+..+.. +..++++++ ++++++ .|+.|++|+.. ....+.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHE 315 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence 9999999887 5557999999999743333444555554444 778888754 555555 78999999643 233445
Q ss_pred eeEecCCCCcEEEEEeeecCCc
Q 044557 311 LAVLEGHRGPVKCLAAAIDNDR 332 (362)
Q Consensus 311 ~~~l~~h~~~v~~~~~~~~~~~ 332 (362)
+..+... ....+++|.++.++
T Consensus 316 ~~~~~~g-~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 316 KGRYAVG-QGPMWVVVNAHEGG 336 (343)
T ss_dssp EEEEECS-SSCCEEEEEEEC--
T ss_pred ccccccC-CCCeeEEEEcccCC
Confidence 5555542 44667788877543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=157.48 Aligned_cols=244 Identities=14% Similarity=0.089 Sum_probs=165.7
Q ss_pred EecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCC-CCCCcccceeeee
Q 044557 34 TGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINN-QEPDHQKYTRLAT 110 (362)
Q Consensus 34 t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~-~~~~~~~~~~~~~ 110 (362)
+++.|++|++||+.+.... .+..+...+.++.+.++ .+++++ ++.|.+|++.. +... .
T Consensus 17 ~~~~~~~i~~~d~~~~~~~----------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-----~--- 77 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR----------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-----K--- 77 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE----------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----E---
T ss_pred CCCcceeEEEEeCCCCcee----------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----E---
Confidence 4678999999998653211 11224567888888765 355554 88999999876 4321 0
Q ss_pred ccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE--CCCcEEEEE--CCCceEEEeeeccCcc
Q 044557 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS--WDRTIKIWR--TSDFKCLESITNAHDD 186 (362)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~d~~i~iwd--~~~~~~~~~~~~~h~~ 186 (362)
+.. ..+...+.+++|+|++++|++++ .++..+||. ..+++. ..+. +..
T Consensus 78 ~~~-------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~--~~~ 129 (297)
T 2ojh_A 78 VDT-------------------------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT--KNL 129 (297)
T ss_dssp CCC-------------------------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC--SSS
T ss_pred ecc-------------------------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEee--cCC
Confidence 000 01234577899999999999999 445555555 444442 3332 233
Q ss_pred cEEEEEEcCCCc-EE-EEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccCCC
Q 044557 187 AINAVALSDDGD-VY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEEDD 263 (362)
Q Consensus 187 ~v~~v~~~~~~~-~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~~~ 263 (362)
.+..++|+|+++ ++ ++..|+.+++|++...... ...+..+...+.+++|+|+|++|+.++ .|+.+++|++....
T Consensus 130 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~ 206 (297)
T 2ojh_A 130 PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG 206 (297)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC
Confidence 588899999997 54 7788999999986432211 122345677899999999999888666 59999999986433
Q ss_pred CcEEEEEeecCccceeEEEEEeCC--eEEEeeCC-----------CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 264 GNILVVGALRGHTKSILCMAVVSD--LVCSGSAD-----------KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 264 ~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D-----------~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
.. ...+..|...+.++.|+++ +++.++.| +.|.+|+........+..+.+|...+..++|+|++
T Consensus 207 ~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 283 (297)
T 2ojh_A 207 SS---VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG 283 (297)
T ss_dssp SC---EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS
T ss_pred CC---cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCC
Confidence 33 2345667778888999765 67777765 56999997655555566666888889988887664
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-19 Score=176.13 Aligned_cols=291 Identities=9% Similarity=0.070 Sum_probs=180.0
Q ss_pred eeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCc--ccceeeeccc---------eeEEeecceeEEEEEcCc
Q 044557 11 CLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSS--ELDQEFLSNN---------NIVAVGKGAVKSLVVLAD 79 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~--~~~~~~~~~~---------~~~~~~~~~v~~i~~~~~ 79 (362)
.-.+|..+ .+..+.|.++.+++++.|+ | +||+.+... ... +.... .........+.++.++++
T Consensus 19 ~~~~~~~~--~~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l--~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd 92 (706)
T 2z3z_A 19 EFYNFYPE--YVVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTR--FSAADLNALMPEGCKFQTTDAFPSFRTLDAGR 92 (706)
T ss_dssp -----------CTTCEEETTEEEEEETTE-E-EEEC-------CEE--EEHHHHHTTC-----------CCCEEEEETTT
T ss_pred cccccccc--cCCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEe--echhHhhhhccchhccccccccCceeEEECCC
Confidence 33344444 3455666677788888888 8 999876543 111 11000 000001135778888877
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS 159 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 159 (362)
..+..+.+++|++||+..+... ....+...+.+++|+|||+.|+.
T Consensus 93 ~~~~~~~~~~i~~~d~~~~~~~-----------------------------------~l~~~~~~~~~~~~SpdG~~la~ 137 (706)
T 2z3z_A 93 GLVVLFTQGGLVGFDMLARKVT-----------------------------------YLFDTNEETASLDFSPVGDRVAY 137 (706)
T ss_dssp TEEEEEETTEEEEEETTTTEEE-----------------------------------EEECCTTCCTTCEECTTSSEEEE
T ss_pred CeEEEEECCEEEEEECCCCceE-----------------------------------EccCCcccccCCcCCCCCCEEEE
Confidence 6444456799999998653210 01123445677899999999998
Q ss_pred EECCCcEEEEECCC-----ceEEEeeeccCccc--------------EEEEEEcCCCc-EEEEe----------------
Q 044557 160 VSWDRTIKIWRTSD-----FKCLESITNAHDDA--------------INAVALSDDGD-VYTGS---------------- 203 (362)
Q Consensus 160 ~s~d~~i~iwd~~~-----~~~~~~~~~~h~~~--------------v~~v~~~~~~~-~~s~~---------------- 203 (362)
+ .|+.|++|++.+ ++...... .+... +.+++|+|+|+ +++++
T Consensus 138 ~-~~~~i~v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~ 215 (706)
T 2z3z_A 138 V-RNHNLYIARGGKLGEGMSRAIAVTI-DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHP 215 (706)
T ss_dssp E-ETTEEEEEECBCTTSCCCCCEESCS-CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCS
T ss_pred E-ECCeEEEEecCcccccCCCcEEecc-CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCC
Confidence 5 689999999988 76554332 22222 47899999997 66665
Q ss_pred -----------------CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC-----cEEEEeccC
Q 044557 204 -----------------ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR-----SIIVWEKEE 261 (362)
Q Consensus 204 -----------------~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-----~i~~wd~~~ 261 (362)
.+..|.+||+.++... .......|...+..++|+|||++|++++.|+ .|++||..+
T Consensus 216 ~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~ 293 (706)
T 2z3z_A 216 LEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV--YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET 293 (706)
T ss_dssp SSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE--ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT
T ss_pred CCCceEEeeCCCCCCCCCeeEEEEEECCCCceE--eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC
Confidence 4468999999876421 1111224667899999999999999988776 899999876
Q ss_pred CCCcEEEEEeecCcc---ceeEEEEEeC--C--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEE-EEeeecCCcc
Q 044557 262 DDGNILVVGALRGHT---KSILCMAVVS--D--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKC-LAAAIDNDRC 333 (362)
Q Consensus 262 ~~~~~~~~~~~~~h~---~~v~~~~~~~--~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~-~~~~~~~~~~ 333 (362)
+.. ...+.. ..+. ..+.++.|++ + ++++++.|+.++||.... ....+..+.+|...+.. ++|+|+++
T Consensus 294 g~~-~~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~-~~~~~~~l~~~~~~v~~~~~~spdg~-- 368 (706)
T 2z3z_A 294 GRF-VRTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT-TGRLIRQVTKGEWEVTNFAGFDPKGT-- 368 (706)
T ss_dssp CCE-EEEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET-TSCEEEECCCSSSCEEEEEEECTTSS--
T ss_pred Cce-eeEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC-CCCEEEecCCCCeEEEeeeEEcCCCC--
Confidence 522 212111 1112 1235567766 4 788999999999998542 23456778888888877 78876643
Q ss_pred CCCCCceEEEecCCCC----cEEEEecc
Q 044557 334 DSSDTSYLVCSGSLDC----DIKVWQIS 357 (362)
Q Consensus 334 ~~~~~~~~l~s~s~D~----~i~~W~~~ 357 (362)
.++++++.++ .|..||+.
T Consensus 369 ------~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 369 ------RLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp ------EEEEEESSSCTTCBEEEEEETT
T ss_pred ------EEEEEecCCCCceEEEEEEEcC
Confidence 4566666666 45555553
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=167.80 Aligned_cols=199 Identities=14% Similarity=0.082 Sum_probs=142.8
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCc-----------eEEE---eeeccCcccEEEEEEcCCCc-EE----EEeC
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDF-----------KCLE---SITNAHDDAINAVALSDDGD-VY----TGSA 204 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-----------~~~~---~~~~~h~~~v~~v~~~~~~~-~~----s~~~ 204 (362)
.+..+++++++.++++++.|+ +++|+.... .... .....+...|.+++|+|++. ++ +++.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 457889999999999999888 999875321 1100 01123566799999999997 66 6788
Q ss_pred CCeEEEEeCCCC-----CC--cceeehhhhccccceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc
Q 044557 205 DKKIKVWRRSPG-----NK--KHSLVDVLERHNSGINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT 276 (362)
Q Consensus 205 dg~i~iw~~~~~-----~~--~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~ 276 (362)
|+.|++||+.+. .. .......+.+|...|.+++|+|+ +.+|++++.||+|++||+++.. ......+|.
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~----~~~~~~~~~ 192 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV----KVCATLPST 192 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE----EEEEEECGG
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc----ceeeccCCC
Confidence 999999998653 11 01123445678999999999998 8899999999999999998642 223345688
Q ss_pred ceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCC-------CCcEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 277 KSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGH-------RGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 277 ~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h-------~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
..|.+++|+++ ++++|+.|++|++|+.. ......+..| ...|.+++|+++.. .+++.++.
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~--------~l~~~~~~ 261 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT---LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV--------FAIVYAAA 261 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT---CCEEEEECCCTTCCTTSCEEEEEEEEEETTE--------EEEEEEET
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC---CcccccccCCcccCCCCceeEEEEEEecCce--------EEEEEccC
Confidence 99999999864 89999999999999964 2223334333 34889999876431 23333444
Q ss_pred CCc------EEEEeccc
Q 044557 348 DCD------IKVWQISF 358 (362)
Q Consensus 348 D~~------i~~W~~~~ 358 (362)
||. +++|++..
T Consensus 262 dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 262 DGTLETSPDVVMALLPK 278 (434)
T ss_dssp TCCSSSCCEEEEEECCC
T ss_pred CCccCCCCceEEEEecc
Confidence 533 89999863
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=165.91 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=118.3
Q ss_pred eecCceeEEEEecCCCEEE----EEECCCcEEEEECCCc--------eEE--EeeeccCcccEEEEEEcCC-Cc-EEEEe
Q 044557 140 HHVDAVSALALTKDETLLY----SVSWDRTIKIWRTSDF--------KCL--ESITNAHDDAINAVALSDD-GD-VYTGS 203 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~----s~s~d~~i~iwd~~~~--------~~~--~~~~~~h~~~v~~v~~~~~-~~-~~s~~ 203 (362)
.+...|.+++|+|++++|+ +|+.|+.|+|||+++. +.+ .....+|...|.+++|+|+ +. +++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4567899999999999999 7889999999998654 211 1223468999999999997 55 88899
Q ss_pred CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEee----cCcccee
Q 044557 204 ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGAL----RGHTKSI 279 (362)
Q Consensus 204 ~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~----~~h~~~v 279 (362)
.||+|++||+.++.. ......|...|.+++|+|+|++|++|+.||+|++||.+ ... ...+... ..|...|
T Consensus 170 ~Dg~v~iwD~~~~~~----~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~-~~~~~~~~~~~~~~~~~v 243 (434)
T 2oit_A 170 ADGSIAVLQVTETVK----VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE-KKVIPCPPFYESDHPVRV 243 (434)
T ss_dssp TTSCEEEEEESSSEE----EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-EEEECCCTTCCTTSCEEE
T ss_pred CCCeEEEEEcCCCcc----eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-cccccCCcccCCCCceeE
Confidence 999999999987632 22234578899999999999999999999999999987 221 1111111 1234478
Q ss_pred EEEEEeCC--eE-EEeeCCCc------EEEeeCCC
Q 044557 280 LCMAVVSD--LV-CSGSADKT------IRIWRGID 305 (362)
Q Consensus 280 ~~~~~~~~--~~-~s~s~D~~------i~~W~~~~ 305 (362)
.++.|.++ ++ +.++.||. +++|++..
T Consensus 244 ~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 244 LDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 99999765 33 23444433 88998643
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-19 Score=153.90 Aligned_cols=199 Identities=15% Similarity=0.055 Sum_probs=142.1
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCC-ceEEEeeeccCcccEEEEEEcCCCc-EEEEe--CCCeEEEEeC--
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD-FKCLESITNAHDDAINAVALSDDGD-VYTGS--ADKKIKVWRR-- 213 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~--~dg~i~iw~~-- 213 (362)
.|...+.+++|+|++++|++++ ++.|++||+.+ ++........+...+.+++|+|+++ +++++ .++.++||.+
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 4678899999999999999987 88999999998 7665544333346788999999997 66666 3345555554
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEE
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVC 290 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~ 290 (362)
.++. ... +. +...+..++|+||+++|+ +++.|+.+++|++....... ..+..|...+.++.|+++ .++
T Consensus 118 ~~~~--~~~---~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 118 TGGT--PRL---MT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE---TRLTHGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp TCCC--CEE---CC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE---EECCCSSSCEEEEEECTTSSEEE
T ss_pred CCCc--eEE---ee-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc---eEcccCCCccccceECCCCCEEE
Confidence 4332 111 11 223488899999999887 78889999999975433332 235567778899999765 555
Q ss_pred Ee-eCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCC-----------CcEEEEeccc
Q 044557 291 SG-SADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD-----------CDIKVWQISF 358 (362)
Q Consensus 291 s~-s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D-----------~~i~~W~~~~ 358 (362)
.+ ..|+.+++|+.... ...+..+..|...+..++|+|++. +|+.++.| +.|.+||+..
T Consensus 189 ~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVD-GSSVERITDSAYGDWFPHPSPSGD---------KVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEECTTSSCEEEEEETT-SSCEEECCCCSEEEEEEEECTTSS---------EEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEecCCCCccEEEECCC-CCCcEEEecCCcccCCeEECCCCC---------EEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 44 46999999986322 234567788888999999987643 46666555 5699999854
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.9e-17 Score=144.47 Aligned_cols=284 Identities=14% Similarity=0.148 Sum_probs=169.4
Q ss_pred CccceeeeEec--CcEEEEecCC----CeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe-cCCcE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSD----NEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH-QDHKI 90 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~D----g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~-~dg~i 90 (362)
|......++++ +++|++++.+ +.|++|++........... ....+......+.+.++.|++++ .++.|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~-----~~~~~~~~p~~~~~dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN-----TQKTMGADPCYLTTNGKNIVTANYSGGSI 122 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE-----EEECSSSCEEEEEECSSEEEEEETTTTEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee-----EeccCCCCcEEEEECCCEEEEEECCCCEE
Confidence 56677777774 7888888876 8999999865322111100 00111223344555555677766 57899
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIW 169 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iw 169 (362)
.+|++.......... ........... + ...+...+.+++|+|++++|++++ .++.|++|
T Consensus 123 ~~~~~~~~g~~~~~~-~~~~~~g~~~~------~-------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~ 182 (361)
T 3scy_A 123 TVFPIGQDGALLPAS-DVIEFKGSGPD------K-------------ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF 182 (361)
T ss_dssp EEEEBCTTSCBCSCS-EEEECCCCCSC------T-------------TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCcCcccc-eeEEccCCCCC------c-------------cccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence 999986432111100 00000000000 0 001223467899999999766655 58899999
Q ss_pred ECCCceE------E------EeeeccCcccEEEEEEcCCCc-EEEEe-CCCeEEEEeCCCCCCcc-eeehhhhcccccee
Q 044557 170 RTSDFKC------L------ESITNAHDDAINAVALSDDGD-VYTGS-ADKKIKVWRRSPGNKKH-SLVDVLERHNSGIN 234 (362)
Q Consensus 170 d~~~~~~------~------~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg~i~iw~~~~~~~~~-~~~~~~~~h~~~v~ 234 (362)
++..... + ......+...+..++|+|+|+ +++++ .++.|.+|++.++.... ........+.....
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~ 262 (361)
T 3scy_A 183 NINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSG 262 (361)
T ss_dssp EECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEE
T ss_pred EEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcc
Confidence 8764321 1 122233455678999999997 55555 68999999987543211 01112223344567
Q ss_pred EEEEecCCCEEEEEcCC--CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEee-CCCcEEEeeCCCCcee
Q 044557 235 ALALSCDGSVLYSGACD--RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGS-ADKTIRIWRGIDRNYT 309 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s-~D~~i~~W~~~~~~~~ 309 (362)
.++|+|||++|+++..+ +.|.+|++....+....+..+.. ...+.+++|+++ ++++++ .++.|.+|+.....++
T Consensus 263 ~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 263 DIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp EEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred cEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 99999999999776654 89999998643444444444444 456778888865 566655 7799999865433333
Q ss_pred eeeEe-cCCCCcEEEEEee
Q 044557 310 CLAVL-EGHRGPVKCLAAA 327 (362)
Q Consensus 310 ~~~~l-~~h~~~v~~~~~~ 327 (362)
..... ..+...+.|++|.
T Consensus 342 ~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 342 LTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEECSCCEECSSEEEEEEE
T ss_pred EeecceeeeCCCCeEEEEc
Confidence 33222 2245568888774
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-18 Score=165.70 Aligned_cols=290 Identities=9% Similarity=0.036 Sum_probs=180.0
Q ss_pred cceeeeEecC-cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecC
Q 044557 20 SYVSSLALAG-KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 20 ~~V~~l~~~~-~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~ 96 (362)
..|.+++|+. ++++.+ .|++|++||+.+... . . +..+...+..+.++++ .|+. +.|+.|++|++.
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~--~-~-------l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKV--T-Y-------LFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEE--E-E-------EECCTTCCTTCEECTTSSEEEE-EETTEEEEEECB
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCce--E-E-------ccCCcccccCCcCCCCCCEEEE-EECCeEEEEecC
Confidence 5689999963 444433 469999999865321 1 1 1112334556667665 4555 578999999997
Q ss_pred C-----CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE----------
Q 044557 97 N-----QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS---------- 161 (362)
Q Consensus 97 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---------- 161 (362)
. +... .+. ..... .+..... ....+...+.+++|+|||++|++++
T Consensus 150 ~~~~~~g~~~-----~~~---~~~~~-----------~~~~g~~-~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~ 209 (706)
T 2z3z_A 150 KLGEGMSRAI-----AVT---IDGTE-----------TLVYGQA-VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP 209 (706)
T ss_dssp CTTSCCCCCE-----ESC---SCCBT-----------TEEESSC-CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred cccccCCCcE-----Eec---cCCCC-----------CeEcccc-hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence 6 4321 000 00000 0000000 0001234467899999999999988
Q ss_pred -----------------------CCCcEEEEECCCceEEEeee-ccCcccEEEEEEcCCCc-EEEEeCCC-----eEEEE
Q 044557 162 -----------------------WDRTIKIWRTSDFKCLESIT-NAHDDAINAVALSDDGD-VYTGSADK-----KIKVW 211 (362)
Q Consensus 162 -----------------------~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~v~~~~~~~-~~s~~~dg-----~i~iw 211 (362)
.+..|++||+.+++...... ..|...+.+++|+|+|+ +++++.|+ .|.+|
T Consensus 210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~ 289 (706)
T 2z3z_A 210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY 289 (706)
T ss_dssp EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence 45789999999887654332 24667899999999998 77766665 89999
Q ss_pred eCCCCCCcceeehhhhccc---cceeEEEEec--CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEE-EEEe
Q 044557 212 RRSPGNKKHSLVDVLERHN---SGINALALSC--DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC-MAVV 285 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~---~~v~~i~~s~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~-~~~~ 285 (362)
|+.++.....+.. ..+. ..+..++|+| ||++|++++.|+.+++|....... ....+..|...+.. ++|+
T Consensus 290 d~~~g~~~~~~~~--~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---~~~~l~~~~~~v~~~~~~s 364 (706)
T 2z3z_A 290 DAETGRFVRTLFV--ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR---LIRQVTKGEWEVTNFAGFD 364 (706)
T ss_dssp ETTTCCEEEEEEE--EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC---EEEECCCSSSCEEEEEEEC
T ss_pred ECCCCceeeEEEE--ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC---EEEecCCCCeEEEeeeEEc
Confidence 9987632222211 1122 2346789999 999999999999999998763222 23345666666765 6787
Q ss_pred CC--eE-EEeeCCC----cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCC---CcEEEEe
Q 044557 286 SD--LV-CSGSADK----TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD---CDIKVWQ 355 (362)
Q Consensus 286 ~~--~~-~s~s~D~----~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D---~~i~~W~ 355 (362)
++ .+ ++++.++ .|..|+..... ...+. |...+..++|+|+++ .++++++.+ +.|++||
T Consensus 365 pdg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l~-~~~~~~~~~~spdg~--------~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 365 PKGTRLYFESTEASPLERHFYCIDIKGGK---TKDLT-PESGMHRTQLSPDGS--------AIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp TTSSEEEEEESSSCTTCBEEEEEETTCCC---CEESC-CSSSEEEEEECTTSS--------EEEEEEECSSCSCEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEEEEcCCCC---ceecc-CCCceEEEEECCCCC--------EEEEEecCCCCCcEEEEEE
Confidence 54 44 4555555 45555543222 33333 777899999987653 344444443 5699999
Q ss_pred ccc
Q 044557 356 ISF 358 (362)
Q Consensus 356 ~~~ 358 (362)
+..
T Consensus 433 ~~~ 435 (706)
T 2z3z_A 433 IGK 435 (706)
T ss_dssp SSS
T ss_pred CCC
Confidence 853
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-17 Score=148.55 Aligned_cols=265 Identities=9% Similarity=0.106 Sum_probs=171.5
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc--eeEEEEEcCc--eeE-EEecCCcEEEEecCCCCCCccc
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG--AVKSLVVLAD--KLF-SAHQDHKIRVWKINNQEPDHQK 104 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~--~l~-s~~~dg~i~~w~~~~~~~~~~~ 104 (362)
+++++++.+++|++||..+... ...+. .+.. .+..+.+.++ .++ ++..++.|.+||+..++..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~--~~~~~-------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--- 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV--DKVIT-------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL--- 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE--EEEEE-------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---
T ss_pred cEEEEcCCCCeEEEEECCCCcE--EEEEE-------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---
Confidence 5799999999999999875321 11111 1111 3456667654 454 4556789999998754311
Q ss_pred ceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE------------CCCcEEEEECC
Q 044557 105 YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS------------WDRTIKIWRTS 172 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------------~d~~i~iwd~~ 172 (362)
..++.... ..|...+.+++|+|++++|++++ .++.|.+||+.
T Consensus 70 ----~~~~~~~~----------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~ 123 (337)
T 1pby_B 70 ----GRIDLSTP----------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123 (337)
T ss_dssp ----EEEECCBT----------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred ----eeEEcCCc----------------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC
Confidence 00000000 00223466789999999998886 67999999999
Q ss_pred CceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC
Q 044557 173 DFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD 251 (362)
Q Consensus 173 ~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d 251 (362)
+++.+..+.. ...+.+++|+|+++ ++++ ++.|.+||+.++.....+. ...+..+ +.|+|+|..|+..+.+
T Consensus 124 ~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~--~~~~~~~---~~~s~dg~~l~~~~~~ 194 (337)
T 1pby_B 124 TLSRRKAFEA--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP--IQSWEAE---TYAQPDVLAVWNQHES 194 (337)
T ss_dssp TTEEEEEEEC--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC--STTTTTT---TBCCCBCCCCCCCCTT
T ss_pred CCcEEEEEeC--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee--ccccCCC---ceeCCCccEEeeeccC
Confidence 9887776643 34577889999997 6666 6899999998764322211 1111122 3678999877655543
Q ss_pred C------------------------cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC
Q 044557 252 R------------------------SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 252 ~------------------------~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~ 305 (362)
+ .|.+||..+.+. . ...+..+...+.+++++++ +++++ |+.|++|+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~ 269 (337)
T 1pby_B 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM--A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK 269 (337)
T ss_dssp TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE--E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred CCceeeeeeccccccccccccccccceEEEeCCCCCc--e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence 3 367899876442 2 2234445566778888865 66666 79999999643
Q ss_pred CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 306 RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 306 ~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+.+..+..+ ..+.+++|+|+++ +|++++.|+.|++||+..
T Consensus 270 --~~~~~~~~~~-~~~~~~~~s~dg~---------~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 270 --NASIKRVPLP-HSYYSVNVSTDGS---------TVWLGGALGDLAAYDAET 310 (337)
T ss_dssp --TEEEEEEECS-SCCCEEEECTTSC---------EEEEESBSSEEEEEETTT
T ss_pred --CcCcceecCC-CceeeEEECCCCC---------EEEEEcCCCcEEEEECcC
Confidence 3445555433 4578888876643 466678899999999853
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-17 Score=170.86 Aligned_cols=287 Identities=11% Similarity=0.059 Sum_probs=199.7
Q ss_pred eeeecccCccceeeeEecCc-EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecC
Q 044557 11 CLTTLKGHNSYVSSLALAGK-FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQD 87 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~~~-~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~d 87 (362)
....+.+|.+.+.++.|+++ ++++++.|+++++|.+....... ..+.. +. .+....+++ ..++.+ .+
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~-~~l~~-------~~-~~~~~~~SpDG~~la~~-~~ 264 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-RKHTS-------FT-DYYPRHLNTDGRRILFS-KG 264 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-EECCC-------CC-SSCEEEEEESSSCEEEE-ET
T ss_pred CeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcc-eEecC-------CC-CcceeeEcCCCCEEEEE-eC
Confidence 34556899999999999765 56778889999999865322111 11110 11 122334443 345555 58
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe-cCCCEEEEEECCCcE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT-KDETLLYSVSWDRTI 166 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~d~~i 166 (362)
+.|.+|++.... +..+..... ........|...+.+++|+ |||+.|+.++ ++.|
T Consensus 265 ~~i~~~d~~~~~--------l~~l~~~~~----------------~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i 319 (1045)
T 1k32_A 265 GSIYIFNPDTEK--------IEKIEIGDL----------------ESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQA 319 (1045)
T ss_dssp TEEEEECTTTCC--------EEECCCCCC----------------CBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEE
T ss_pred CEEEEecCCceE--------eeeeccCcc----------------cccccccccccccceeeecCCCCCEEEEEE-cCEE
Confidence 999999983211 111111000 0001123466788999999 9999999888 8899
Q ss_pred EEEECCCceEEEeeeccCcc-cEEEEEEcCCCc-EEEEeCCCeEE-EEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 167 KIWRTSDFKCLESITNAHDD-AINAVALSDDGD-VYTGSADKKIK-VWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~-~v~~v~~~~~~~-~~s~~~dg~i~-iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
.+|++..++... +. .|.. .+..++|+ +|+ ++.++.++.+. +|++..+... .+..|...+..++|+|||+
T Consensus 320 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-----~l~~~~~~~~~~~~SpDG~ 391 (1045)
T 1k32_A 320 FIQDVSGTYVLK-VP-EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-----KFEENLGNVFAMGVDRNGK 391 (1045)
T ss_dssp EEECTTSSBEEE-CS-CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-----ECCCCCCSEEEEEECTTSS
T ss_pred EEEcCCCCceEE-cc-CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-----EecCCccceeeeEECCCCC
Confidence 999998876544 33 4666 88999999 886 77777788888 8998765321 1225778899999999999
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCC----------cEEEeeCCCCceeee
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADK----------TIRIWRGIDRNYTCL 311 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~----------~i~~W~~~~~~~~~~ 311 (362)
+|++++.++.|++||+.+++. .....+|...+.+++|+++ ++++++.++ .|++|+... .. +
T Consensus 392 ~la~~~~~~~v~~~d~~tg~~----~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~--g~-~ 464 (1045)
T 1k32_A 392 FAVVANDRFEIMTVDLETGKP----TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG--RK-I 464 (1045)
T ss_dssp EEEEEETTSEEEEEETTTCCE----EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--TE-E
T ss_pred EEEEECCCCeEEEEECCCCce----EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC--Cc-E
Confidence 999999999999999986432 2223468888889999875 677776654 899999643 23 5
Q ss_pred eEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 312 AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 312 ~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
..+.+|...+..++|+|++. .|+.++.++..++|+.
T Consensus 465 ~~l~~~~~~~~~~~~spdG~---------~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 465 FAATTENSHDYAPAFDADSK---------NLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp EECSCSSSBEEEEEECTTSC---------EEEEEESCCCCCEECS
T ss_pred EEeeCCCcccCCceEcCCCC---------EEEEEecccCCcCcch
Confidence 67888999999999987653 5777888888888875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-18 Score=164.07 Aligned_cols=270 Identities=11% Similarity=0.054 Sum_probs=175.8
Q ss_pred eeeecccC-ccceeeeEe--cCcEEEEecC-CCeEEEeecCCCCcccceeeeccceeEEeec-ceeEEEEEcCce-eEEE
Q 044557 11 CLTTLKGH-NSYVSSLAL--AGKFLYTGSS-DNEVRSWDCNTFSSELDQEFLSNNNIVAVGK-GAVKSLVVLADK-LFSA 84 (362)
Q Consensus 11 ~~~tl~gH-~~~V~~l~~--~~~~l~t~s~-Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~-l~s~ 84 (362)
+++.++.+ ..+|.++.+ +|++||+++. ||+++||++.+... .. +..+. ..+..+.+++++ ++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~-------lt~~~~~~~~~~~~spd~~l~~~ 81 (582)
T 3o4h_A 12 IVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VK-------LNREPINSVLDPHYGVGRVILVR 81 (582)
T ss_dssp HHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---EE-------CCSSCCSEECEECTTCSEEEEEE
T ss_pred HHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc---Ee-------eecccccccccccCCCCeEEEEe
Confidence 44455543 567999887 5899999887 99999999743221 01 01122 356667777776 4455
Q ss_pred ec---CCcEEEEecCC--CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC--EE
Q 044557 85 HQ---DHKIRVWKINN--QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET--LL 157 (362)
Q Consensus 85 ~~---dg~i~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l 157 (362)
+. +...++|.++. ..... .+ .....+...+|+|+++ .+
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g~~~-------~l----------------------------~~~~~~~~~~~s~dg~~~~~ 126 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPGEEQ-------RL----------------------------EAVKPMRILSGVDTGEAVVF 126 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTTCCE-------EC----------------------------TTSCSBEEEEEEECSSCEEE
T ss_pred ccCCCCcceEEEEEeccCCCccc-------cc----------------------------cCCCCceeeeeCCCCCeEEE
Confidence 43 45567776543 11100 00 0011223457777775 44
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC----CeEEEEeCCCCCCcceeehhhhccccc
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD----KKIKVWRRSPGNKKHSLVDVLERHNSG 232 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~h~~~ 232 (362)
++++ ++.+.+||+.+++...... .+ . .+++|+|+|+ +++++.| +.|.+||+.++... .+..|...
T Consensus 127 ~s~~-~~~~~l~d~~~g~~~~l~~-~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~~~~~ 196 (582)
T 3o4h_A 127 TGAT-EDRVALYALDGGGLRELAR-LP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDSGEGS 196 (582)
T ss_dssp EEEC-SSCEEEEEEETTEEEEEEE-ES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-----EECCSSCE
T ss_pred EecC-CCCceEEEccCCcEEEeec-CC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-----EeecCCCc
Confidence 4444 4555599998887654332 22 2 7889999998 5656666 78999998876532 23457788
Q ss_pred eeEEEEecCCCEEEEEcCCC--cEEEEeccCCCCcEEEEEeecCccceeEEEE--------EeCC--eEEEeeCCCcEEE
Q 044557 233 INALALSCDGSVLYSGACDR--SIIVWEKEEDDGNILVVGALRGHTKSILCMA--------VVSD--LVCSGSADKTIRI 300 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~--------~~~~--~~~s~s~D~~i~~ 300 (362)
+..++|+|||+.|+++..++ .|++||+.+++. . .+.+|...+..+. |+++ ++++++.|+.+++
T Consensus 197 ~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l 271 (582)
T 3o4h_A 197 FSSASISPGMKVTAGLETAREARLVTVDPRDGSV--E---DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAV 271 (582)
T ss_dssp EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE--E---ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred cccceECCCCCEEEEccCCCeeEEEEEcCCCCcE--E---EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEE
Confidence 89999999999999888898 899999876432 2 3556665555555 7765 7899999999999
Q ss_pred eeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc---EEEEecc
Q 044557 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD---IKVWQIS 357 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~---i~~W~~~ 357 (362)
|+. +++.. .+...|.+++|+ ++ .++++++.+.+ +.+|+..
T Consensus 272 ~~~----g~~~~---~~~~~v~~~~~s-dg---------~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 272 FID----GERVE---APQGNHGRVVLW-RG---------KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EET----TEEEC---CCSSEEEEEEEE-TT---------EEEEEEEETTEEEEEEEETTC
T ss_pred EEE----CCeec---cCCCceEEEEec-CC---------EEEEEEcCCCCCCeEEEEcCC
Confidence 996 23333 234678888887 43 46777777755 6666654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-17 Score=162.65 Aligned_cols=290 Identities=12% Similarity=0.057 Sum_probs=181.2
Q ss_pred ceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eEEEecCCcEEEEecC
Q 044557 21 YVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LFSAHQDHKIRVWKIN 96 (362)
Q Consensus 21 ~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~s~~~dg~i~~w~~~ 96 (362)
.|.+++|+ |++|++++. ++|++||+.+........+ ..+...+..+.+++|. |+.++ ++.|.+|++.
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-------~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~ 180 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-------THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLA 180 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-------CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-------ccCCcccccccCCCCCCEEEEEe-CCcEEEEecC
Confidence 47888884 788888876 9999999876410001111 1123456777787653 65555 6799999987
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeee-eeEEeeecCceeEEEEecCCCEEEEEECCC-----------
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHK-TCTWVHHVDAVSALALTKDETLLYSVSWDR----------- 164 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~----------- 164 (362)
.+... . +...... .+.... ..........+..++|+|||++|+.++.|+
T Consensus 181 ~g~~~-----~---~~~~~~~-----------~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~ 241 (741)
T 2ecf_A 181 SGRQM-----Q---LTADGST-----------TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV 241 (741)
T ss_dssp TTEEE-----E---CCCCCCS-----------SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred CCCEE-----E---eccCCcc-----------ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence 54311 0 0000000 000000 000000112357789999999999988776
Q ss_pred ----------------------cEEEEECCC-ceEEEeeec-cCcccEEEEEEcCCCc-EEEEe-----CCCeEEEEeCC
Q 044557 165 ----------------------TIKIWRTSD-FKCLESITN-AHDDAINAVALSDDGD-VYTGS-----ADKKIKVWRRS 214 (362)
Q Consensus 165 ----------------------~i~iwd~~~-~~~~~~~~~-~h~~~v~~v~~~~~~~-~~s~~-----~dg~i~iw~~~ 214 (362)
.|.+||+.+ ++....... .|...+..++| |+|+ ++.++ .+..|.+||+.
T Consensus 242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~ 320 (741)
T 2ecf_A 242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA 320 (741)
T ss_dssp CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred CCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence 889999988 765443221 47778999999 9997 55443 35789999998
Q ss_pred CCCCcceeehhhhcccc----ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE-EEeCC--
Q 044557 215 PGNKKHSLVDVLERHNS----GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM-AVVSD-- 287 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~----~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~-- 287 (362)
++..... ...+.. .+..++|+|||+++++++.|+.+++|....... ...+..|...+..+ .|+++
T Consensus 321 ~g~~~~~----~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~----~~~l~~~~~~v~~~~~~s~dg~ 392 (741)
T 2ecf_A 321 SNQQRVL----AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK----AAALTHGNWSVDELLAVDEKAG 392 (741)
T ss_dssp TCCEEEE----EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC----EEESCCSSSCEEEEEEEETTTT
T ss_pred CCceEEE----EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC----eeeeeecceEEEeEeEEeCCCC
Confidence 7753221 122222 456889999999999999999988887763222 23466677777766 47754
Q ss_pred e-EEEeeCCC--cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCC---CcEEEEecc
Q 044557 288 L-VCSGSADK--TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD---CDIKVWQIS 357 (362)
Q Consensus 288 ~-~~s~s~D~--~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D---~~i~~W~~~ 357 (362)
. +++++.|+ .++||+... .......+.+ ...+..++|+|+++ .++++.+.+ ..+.+|+..
T Consensus 393 ~l~~~~~~~~~~~~~l~~~~~-~g~~~~~l~~-~~~~~~~~~spdg~--------~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 393 LAYFRAGIESARESQIYAVPL-QGGQPQRLSK-APGMHSASFARNAS--------VYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp EEEEEECSSCTTCBEEEEEET-TCCCCEECCC-SCSEEEEEECTTSS--------EEEEEEEETTEEEEEEEEETT
T ss_pred EEEEEEeCCCCceEEEEEEEc-CCCCeeeccc-CCCceEEEECCCCC--------EEEEEecCCCCCCeEEEEEcC
Confidence 4 45666666 899998532 1233455655 66788999987754 344444433 357777753
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-16 Score=140.08 Aligned_cols=268 Identities=11% Similarity=0.088 Sum_probs=169.1
Q ss_pred ccceeeeEec--CcEEEEecC-------CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEE-ec
Q 044557 19 NSYVSSLALA--GKFLYTGSS-------DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSA-HQ 86 (362)
Q Consensus 19 ~~~V~~l~~~--~~~l~t~s~-------Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~-~~ 86 (362)
...+..+.++ ++++++++. ++.|.+||..+... ..... . ......+.+.+ +.++.+ ..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~-------~-~~~~~~~~~s~dg~~l~v~~~~ 109 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV--TQAIH-------N-DLKPFGATINNTTQTLWFGNTV 109 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE--EEEEE-------E-SSCCCSEEEETTTTEEEEEETT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE--EEEEe-------c-CCCcceEEECCCCCEEEEEecC
Confidence 3456677774 567766663 67899999876431 11111 1 12234455554 345554 55
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE--CCC
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS--WDR 164 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~d~ 164 (362)
++.|.+||.+.++.. ..++..... .+. ......+.+++++|+++.+++++ .++
T Consensus 110 ~~~v~~~d~~~~~~~-------~~~~~~~~~-----~~~-------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 164 (353)
T 3vgz_A 110 NSAVTAIDAKTGEVK-------GRLVLDDRK-----RTE-------------EVRPLQPRELVADDATNTVYISGIGKES 164 (353)
T ss_dssp TTEEEEEETTTCCEE-------EEEESCCCC-----CCS-------------SCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred CCEEEEEeCCCCeeE-------EEEecCCCc-----ccc-------------ccCCCCCceEEECCCCCEEEEEecCCCc
Confidence 799999998765421 111000000 000 00011257899999999877776 478
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
.|.+||..+++.+..+. .+...+.+++|+|++. +++++.++.|.+||..++...........++...+..++|+|+|+
T Consensus 165 ~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 165 VIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp EEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred eEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence 99999999998877664 2445578899999987 778888999999999876533222111122455678899999999
Q ss_pred EEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCCCC
Q 044557 244 VLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG 319 (362)
Q Consensus 244 ~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~ 319 (362)
+|+.++. ++.|.+||..+.+. +..+.... ...++++++ ++++...++.|.+|+... .+.+..+... .
T Consensus 244 ~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~-~ 314 (353)
T 3vgz_A 244 RAFITDSKAAEVLVVDTRNGNI----LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS--YKVVKTFDTP-T 314 (353)
T ss_dssp EEEEEESSSSEEEEEETTTCCE----EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT--TEEEEEEECC-S
T ss_pred EEEEEeCCCCEEEEEECCCCcE----EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCC--CeEEEEEecC-C
Confidence 8777665 48999999976432 22222222 245667654 456666899999999643 4455555543 4
Q ss_pred cEEEEEeeecCC
Q 044557 320 PVKCLAAAIDND 331 (362)
Q Consensus 320 ~v~~~~~~~~~~ 331 (362)
.+.+++|+|+++
T Consensus 315 ~~~~~~~s~dg~ 326 (353)
T 3vgz_A 315 HPNSLALSADGK 326 (353)
T ss_dssp EEEEEEECTTSC
T ss_pred CCCeEEEcCCCC
Confidence 678899987654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-17 Score=163.47 Aligned_cols=284 Identities=10% Similarity=0.003 Sum_probs=173.4
Q ss_pred cceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc---eeEEEEEcCc--eeEEEecC-----
Q 044557 20 SYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG---AVKSLVVLAD--KLFSAHQD----- 87 (362)
Q Consensus 20 ~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~--~l~s~~~d----- 87 (362)
..+.+++|+ |+++++ +.||+|++||+.+.... ..+. .+.. .+.++.+++| .|++++.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~--~~~~-------~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~ 86 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST--VLIE-------GKKIESLRAIRYEISPDREYALFSYNVEPIYQ 86 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE--EEEC-------TTTTTTTTCSEEEECTTSSEEEEEESCCCCSS
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE--EEec-------cccccccccceEEECCCCCEEEEEecCcccee
Confidence 346777884 677766 78999999998764321 1111 1111 3677778765 47777654
Q ss_pred ----CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 88 ----HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 88 ----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
+.|.+||+..+... .+... ..|...+..++|+|||+.||.++.
T Consensus 87 ~~~~~~i~~~d~~~~~~~-----~l~~~---------------------------~~~~~~~~~~~~SPdG~~la~~~~- 133 (723)
T 1xfd_A 87 HSYTGYYVLSKIPHGDPQ-----SLDPP---------------------------EVSNAKLQYAGWGPKGQQLIFIFE- 133 (723)
T ss_dssp SCCCSEEEEEESSSCCCE-----ECCCT---------------------------TCCSCCCSBCCBCSSTTCEEEEET-
T ss_pred ecceeeEEEEECCCCceE-----eccCC---------------------------ccccccccccEECCCCCEEEEEEC-
Confidence 78889998765420 00000 123445778899999999999885
Q ss_pred CcEEEEECCCceEEEeeeccCccc------------------EEEEEEcCCCc-EEEEeCCC------------------
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDA------------------INAVALSDDGD-VYTGSADK------------------ 206 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~------------------v~~v~~~~~~~-~~s~~~dg------------------ 206 (362)
+.|++||+.+++...... .+... +.+++|+|+|+ |++++.|+
T Consensus 134 ~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~ 212 (723)
T 1xfd_A 134 NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPT 212 (723)
T ss_dssp TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCc
Confidence 899999999877655433 22222 27899999997 66665442
Q ss_pred ----------------eEEEEeCCCCCCcceeeh--hhhccccceeEEEEecCCCEEEEEcC----CCcEEEEeccCCCC
Q 044557 207 ----------------KIKVWRRSPGNKKHSLVD--VLERHNSGINALALSCDGSVLYSGAC----DRSIIVWEKEEDDG 264 (362)
Q Consensus 207 ----------------~i~iw~~~~~~~~~~~~~--~~~~h~~~v~~i~~s~~~~~l~s~~~----d~~i~~wd~~~~~~ 264 (362)
.|++||+.++.....+.. ....+...+..++|+|||++|++.+. +..|++||+.+++.
T Consensus 213 ~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 213 VKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp CEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred ceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 799999987653222211 11224667899999999999877653 35799999876542
Q ss_pred cEEEEEeecCcccee----EEEEEeCC--eEE--EeeCCC------cEEEee-CCCCceeeeeEecCCCCcEEE-EEeee
Q 044557 265 NILVVGALRGHTKSI----LCMAVVSD--LVC--SGSADK------TIRIWR-GIDRNYTCLAVLEGHRGPVKC-LAAAI 328 (362)
Q Consensus 265 ~~~~~~~~~~h~~~v----~~~~~~~~--~~~--s~s~D~------~i~~W~-~~~~~~~~~~~l~~h~~~v~~-~~~~~ 328 (362)
.. +.. ..+...+ ..+.|+++ .++ ++..|+ .|.+|+ .......+...+..+...+.. ++|+|
T Consensus 293 ~~-~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp 369 (723)
T 1xfd_A 293 TK-KHE--DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE 369 (723)
T ss_dssp EE-EEE--EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred eE-EEE--eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence 21 111 1122322 25677754 444 355677 455565 222110013445543444544 68887
Q ss_pred cCCccCCCCCceEEEecCCC--CcEEEEeccc
Q 044557 329 DNDRCDSSDTSYLVCSGSLD--CDIKVWQISF 358 (362)
Q Consensus 329 ~~~~~~~~~~~~~l~s~s~D--~~i~~W~~~~ 358 (362)
+++ .+++++..| +.++||++..
T Consensus 370 dg~--------~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 370 KGN--------KIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp TTT--------EEEEEESSSCTTCCEEEEECS
T ss_pred CCC--------EEEEEEcCCCCcceEEEEEeC
Confidence 654 344455555 8899999854
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-17 Score=165.83 Aligned_cols=273 Identities=10% Similarity=-0.013 Sum_probs=182.7
Q ss_pred CccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc-eeEEEEEc-CceeEEEecCCcEE-
Q 044557 18 HNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG-AVKSLVVL-ADKLFSAHQDHKIR- 91 (362)
Q Consensus 18 H~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~-~~~l~s~~~dg~i~- 91 (362)
|...+.++.|+ |++|++++ ++.|.+|++...... .. ..+.. .+..+.+. +..++.++.+..+.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~---~~-------~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~ 362 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL---KV-------PEPLRIRYVRRGGDTKVAFIHGTREGDFLG 362 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE---EC-------SCCSCEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE---Ec-------cCCCcceEEeeeEcCCCeEEEEECCCceEE
Confidence 45678888876 56788877 899999997653211 00 11222 45556565 22477777777777
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
+|++..+.. .. +..|...+..++|+||+++|++++.++.|++||+
T Consensus 363 ~~d~~~~~~--------~~---------------------------l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~ 407 (1045)
T 1k32_A 363 IYDYRTGKA--------EK---------------------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL 407 (1045)
T ss_dssp EEETTTCCE--------EE---------------------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEECCCCCc--------eE---------------------------ecCCccceeeeEECCCCCEEEEECCCCeEEEEEC
Confidence 888754321 00 0134567889999999999999999999999999
Q ss_pred CCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC----------CeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 172 SDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD----------KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d----------g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
.+++..... ..|...+.+++|+|+|+ +++++.+ +.|++||+.++. ...+..|...+..++|+|
T Consensus 408 ~tg~~~~~~-~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-----~~~l~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 408 ETGKPTVIE-RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-----IFAATTENSHDYAPAFDA 481 (1045)
T ss_dssp TTCCEEEEE-ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-----EEECSCSSSBEEEEEECT
T ss_pred CCCceEEec-cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-----EEEeeCCCcccCCceEcC
Confidence 988776544 36888889999999998 6666554 499999998753 223445777788999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCC------cEE---------------------------------EEEeecCccceeEE
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDG------NIL---------------------------------VVGALRGHTKSILC 281 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~------~~~---------------------------------~~~~~~~h~~~v~~ 281 (362)
||++|+.++.++..+.|+...... ... .+..+..|...+..
T Consensus 482 dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~ 561 (1045)
T 1k32_A 482 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM 561 (1045)
T ss_dssp TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE
T ss_pred CCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhh
Confidence 999999999988877776432110 000 01123345566778
Q ss_pred EEEeCC--eEEE-----------eeC--CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC
Q 044557 282 MAVVSD--LVCS-----------GSA--DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346 (362)
Q Consensus 282 ~~~~~~--~~~s-----------~s~--D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s 346 (362)
+.++++ ++++ .+. +..|.+||...... ..+. ..+..++|+|+++ .|++++
T Consensus 562 ~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~---~~v~~~~~S~DG~---------~l~~~~ 626 (1045)
T 1k32_A 562 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV---TEVK---NNLTDLRLSADRK---------TVMVRK 626 (1045)
T ss_dssp EEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE---EEEE---EEEEEEEECTTSC---------EEEEEE
T ss_pred eEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcE---EEee---cCcceEEECCCCC---------EEEEEc
Confidence 888776 4554 123 34566666544332 2332 5688888887654 477776
Q ss_pred CCCcEEEEeccc
Q 044557 347 LDCDIKVWQISF 358 (362)
Q Consensus 347 ~D~~i~~W~~~~ 358 (362)
.| .|++||+..
T Consensus 627 ~~-~i~~~d~~~ 637 (1045)
T 1k32_A 627 DD-GKIYTFPLE 637 (1045)
T ss_dssp TT-SCEEEEESS
T ss_pred CC-cEEEEeCcc
Confidence 65 899999954
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.7e-16 Score=137.68 Aligned_cols=273 Identities=11% Similarity=0.100 Sum_probs=164.7
Q ss_pred cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC----CcEEEEecCCCCCCcccceeee
Q 044557 36 SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD----HKIRVWKINNQEPDHQKYTRLA 109 (362)
Q Consensus 36 s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d----g~i~~w~~~~~~~~~~~~~~~~ 109 (362)
+.++.|.+|++......+.... ..+......+.+.++ .|++++.+ +.|.+|+++...... ..+.
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~-------~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~---~~~~ 93 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLS-------DAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL---HLLN 93 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEE-------EEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE---EEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEee-------cccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE---EEee
Confidence 4578999998754332221110 112344555666654 48888875 799999886431100 0110
Q ss_pred eccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEEECCCceEEEee----e---
Q 044557 110 TLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIWRTSDFKCLESI----T--- 181 (362)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~----~--- 181 (362)
. ...+......+++ ++++|++++ .++.|.+|++.....+..+ .
T Consensus 94 ~---------------------------~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 144 (361)
T 3scy_A 94 T---------------------------QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKG 144 (361)
T ss_dssp E---------------------------EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC
T ss_pred E---------------------------eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccC
Confidence 0 0112234556666 788777776 6789999998753322111 1
Q ss_pred ------ccCcccEEEEEEcCCCc-EEEE-eCCCeEEEEeCCCCCC----c-cee----ehhhhccccceeEEEEecCCCE
Q 044557 182 ------NAHDDAINAVALSDDGD-VYTG-SADKKIKVWRRSPGNK----K-HSL----VDVLERHNSGINALALSCDGSV 244 (362)
Q Consensus 182 ------~~h~~~v~~v~~~~~~~-~~s~-~~dg~i~iw~~~~~~~----~-~~~----~~~~~~h~~~v~~i~~s~~~~~ 244 (362)
..+...+.+++|+|+|+ ++++ ..++.|.+|++..... . ... ......+...+..++|+|||++
T Consensus 145 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~ 224 (361)
T 3scy_A 145 SGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF 224 (361)
T ss_dssp CCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred CCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE
Confidence 01123457899999997 5544 4588999999875432 1 100 0111123455788999999998
Q ss_pred EEEEc-CCCcEEEEeccCCCCcEEEEE---eecCccceeEEEEEeCC--eEEE-eeC-CCcEEEeeCC--CCceeeeeEe
Q 044557 245 LYSGA-CDRSIIVWEKEEDDGNILVVG---ALRGHTKSILCMAVVSD--LVCS-GSA-DKTIRIWRGI--DRNYTCLAVL 314 (362)
Q Consensus 245 l~s~~-~d~~i~~wd~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~--~~~s-~s~-D~~i~~W~~~--~~~~~~~~~l 314 (362)
|++++ .++.|.+|++.++ ....+. ....+......++++++ ++++ ... ++.|.+|+.. ......+..+
T Consensus 225 l~v~~~~~~~v~v~~~~~g--~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 225 AYLINEIGGTVIAFRYADG--MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp EEEEETTTCEEEEEEEETT--EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEcCCCCeEEEEEecCC--ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence 87777 6899999998743 222222 22334445678888765 5544 444 5899999974 2334455555
Q ss_pred cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 315 EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 315 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.. ...+.+++|+|+++ ++++++..++.|.+|+++.
T Consensus 303 ~~-g~~~~~~~~spdg~--------~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 303 LT-GIHPRNFIITPNGK--------YLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EC-SSCCCEEEECTTSC--------EEEEEETTTTEEEEEEECT
T ss_pred cC-CCCCceEEECCCCC--------EEEEEECCCCCEEEEEEEC
Confidence 54 55678899987653 3444455789999987753
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-16 Score=140.82 Aligned_cols=228 Identities=11% Similarity=0.044 Sum_probs=149.9
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
+++.+.+++|.+||...++... ....+...+ +++|+|++++++++
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~----------------------------------~~~~~~~~~-~~~~s~dg~~l~~~ 57 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILN----------------------------------QITLGYDFV-DTAITSDCSNVVVT 57 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEE----------------------------------EEECCCCEE-EEEECSSSCEEEEE
T ss_pred EEEecCCCeEEEEeCcccceee----------------------------------eEEccCCcc-eEEEcCCCCEEEEE
Confidence 5667789999999987654210 001122345 89999999977666
Q ss_pred EC-CCcEEEEECCCceE-EEeeeccCcccEEEEEEcCCCc-EEEEeCC-C--eEEEEeCCCCCCcceeehhhhcccccee
Q 044557 161 SW-DRTIKIWRTSDFKC-LESITNAHDDAINAVALSDDGD-VYTGSAD-K--KIKVWRRSPGNKKHSLVDVLERHNSGIN 234 (362)
Q Consensus 161 s~-d~~i~iwd~~~~~~-~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-g--~i~iw~~~~~~~~~~~~~~~~~h~~~v~ 234 (362)
+. ++.|.+||..+++. ...+. .+..+..+++|+|+|+ ++++..+ + .|.+||+.++..... +. ......
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~----~~-~~~~~~ 131 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQ-EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST----IP-IPYDAV 131 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEE-ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE----EE-CCTTEE
T ss_pred eCCCCeEEEEECCCCceeEEecc-cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE----EE-CCCCcc
Confidence 65 89999999998876 55443 4455555599999998 5544444 2 999999987643222 22 234468
Q ss_pred EEEEecCCCEEEEE-cCCCc-EEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCce-
Q 044557 235 ALALSCDGSVLYSG-ACDRS-IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNY- 308 (362)
Q Consensus 235 ~i~~s~~~~~l~s~-~~d~~-i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~- 308 (362)
.++|+|||++|+++ ..++. |.+|++......................++++++ +++++..++.|++|+......
T Consensus 132 ~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 132 GIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI 211 (331)
T ss_dssp EEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred ceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence 99999999866655 45588 9999987533211110111123344678888765 456667799999999643322
Q ss_pred eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 309 TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 309 ~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..+..+..+ ..+..++|+|++. +++++...++.|.+||+..
T Consensus 212 ~~~~~~~~~-~~~~~~~~spdg~--------~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 212 TLLNAVGTN-NLPGTIVVSRDGS--------TVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp EEEEEEECS-SCCCCEEECTTSS--------EEEEECSSEEEEEEEETTT
T ss_pred ceeeeccCC-CCCceEEECCCCC--------EEEEEEcCCCEEEEEECCC
Confidence 125555543 5677888877653 3556666788999999863
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-16 Score=139.36 Aligned_cols=257 Identities=16% Similarity=0.197 Sum_probs=157.3
Q ss_pred cCccceeeeEec--CcEEEEecC---CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe-cCC
Q 044557 17 GHNSYVSSLALA--GKFLYTGSS---DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH-QDH 88 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~---Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~-~dg 88 (362)
.+......++++ |+ |++++. ++.|++||+.......... ...+...+..+.+.++ .|++++ .++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~-------~~~~~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT-------VVAPGTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE-------EEEESCCCSEEEEETTTTEEEEEETTTT
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee-------eecCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 455667778774 66 555544 6999999985432111111 1112334556666654 488777 679
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
+|.+|++..... ...+......+.. +. ...+...+.+++|+|+++++++...++.|++
T Consensus 109 ~v~v~~~~~~g~----~~~~~~~~~~~~~------p~------------~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~ 166 (347)
T 3hfq_A 109 TAEVMKIAADGA----LTLTDTVQHSGHG------PR------------PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYV 166 (347)
T ss_dssp EEEEEEECTTSC----EEEEEEEECCCCC------SS------------TTCSSCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEEEEEeCCCCC----eeecceeecCCCC------CC------------ccccCCCceEEEECCCCcEEEEeCCCCEEEE
Confidence 999999864221 0111111000000 00 0012235788999999997766677889999
Q ss_pred EECC-CceEE--EeeeccCcccEEEEEEcCCCc-EEE-EeCCCeEEEEeCCCCCCcceeehhhhcc------ccceeEEE
Q 044557 169 WRTS-DFKCL--ESITNAHDDAINAVALSDDGD-VYT-GSADKKIKVWRRSPGNKKHSLVDVLERH------NSGINALA 237 (362)
Q Consensus 169 wd~~-~~~~~--~~~~~~h~~~v~~v~~~~~~~-~~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~h------~~~v~~i~ 237 (362)
|++. +++.. ..+.......+..++|+|+|+ +++ ...++.|.+|++................ ...+..++
T Consensus 167 ~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 167 YNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp EEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred EEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence 9998 44332 222222334678899999997 554 5678899999987522221111111111 14578899
Q ss_pred EecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeC-CCcEEEeeCC
Q 044557 238 LSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSA-DKTIRIWRGI 304 (362)
Q Consensus 238 ~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~-D~~i~~W~~~ 304 (362)
|+|||++|+ +...++.|.+|++... +....+..+..+...+..++|+++ ++++++. ++.|.+|+..
T Consensus 247 ~spdG~~l~v~~~~~~~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 247 LSHDGHFLYVSNRGYNTLAVFAVTAD-GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEECGG-GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEECCC-CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 999999885 5556899999998642 234455566666667888999865 5666654 5899999643
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-16 Score=137.53 Aligned_cols=198 Identities=10% Similarity=0.067 Sum_probs=136.7
Q ss_pred ceeEEEEecCCCEEEE-EECCCcEEEEECCCceEEEeeeccCcc--------cEEEEEEcCCCc-EEEEe--CCCeEEEE
Q 044557 144 AVSALALTKDETLLYS-VSWDRTIKIWRTSDFKCLESITNAHDD--------AINAVALSDDGD-VYTGS--ADKKIKVW 211 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~h~~--------~v~~v~~~~~~~-~~s~~--~dg~i~iw 211 (362)
.+..++++|++++++. ...++.|.+||..+++.+..+...+.. .+.+++|+|++. +++++ .++.|.+|
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 4567889999995554 455799999999999887766543221 268899999987 55544 58899999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe-ecCccceeEEEEEeCC--e
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVVSD--L 288 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~--~ 288 (362)
|..++... ..+..+...+..++|+|+|++|++++.++.|.+||..+.+.. ..... ..++...+..++++++ .
T Consensus 170 d~~~~~~~----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~ 244 (353)
T 3vgz_A 170 DGGNIKLK----TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL-SRKKLLDDGKEHFFINISLDTARQR 244 (353)
T ss_dssp ETTTTEEE----EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE-EEEECCCSSSCCCEEEEEEETTTTE
T ss_pred cCCCCceE----EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE-EEEEcCCCCCCcccceEEECCCCCE
Confidence 99876432 222224445788999999999999999999999998764321 11111 1124556777888754 4
Q ss_pred -EEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 289 -VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 289 -~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+++...++.|.+|+... .+.+..+.... ...++|+|+++ +++++...|+.|.+||...
T Consensus 245 l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~--~~~~~~s~dg~--------~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 245 AFITDSKAAEVLVVDTRN--GNILAKVAAPE--SLAVLFNPARN--------EAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp EEEEESSSSEEEEEETTT--CCEEEEEECSS--CCCEEEETTTT--------EEEEEETTTTEEEEEETTT
T ss_pred EEEEeCCCCEEEEEECCC--CcEEEEEEcCC--CceEEECCCCC--------EEEEEECCCCeEEEEECCC
Confidence 45555669999999643 34455554332 24577876643 4667777899999999853
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-16 Score=151.91 Aligned_cols=286 Identities=9% Similarity=0.016 Sum_probs=168.0
Q ss_pred cceeeecccCcc---ceeeeEec--CcEEEEecCC---------CeEEEeecCCCCcccceeeeccceeEEeecceeEEE
Q 044557 9 HHCLTTLKGHNS---YVSSLALA--GKFLYTGSSD---------NEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSL 74 (362)
Q Consensus 9 ~~~~~tl~gH~~---~V~~l~~~--~~~l~t~s~D---------g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 74 (362)
.++...+.+|.. .|.+++|+ |++|++++.+ +.|++||+.+.... .+... ..+...+..+
T Consensus 47 g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~~~----~~~~~~~~~~ 119 (723)
T 1xfd_A 47 NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ---SLDPP----EVSNAKLQYA 119 (723)
T ss_dssp CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE---ECCCT----TCCSCCCSBC
T ss_pred CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE---eccCC----cccccccccc
Confidence 345566677765 48999884 8899998775 78889998764321 11000 0012235566
Q ss_pred EEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec---------C
Q 044557 75 VVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV---------D 143 (362)
Q Consensus 75 ~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~ 143 (362)
.+++| .|+.++ ++.|++|++..+... .+..... .. . .+.++. +
T Consensus 120 ~~SPdG~~la~~~-~~~i~~~~~~~g~~~-----~~~~~~~--~~----------~--------~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 120 GWGPKGQQLIFIF-ENNIYYCAHVGKQAI-----RVVSTGK--EG----------V--------IYNGLSDWLYEEEILK 173 (723)
T ss_dssp CBCSSTTCEEEEE-TTEEEEESSSSSCCE-----EEECCCB--TT----------T--------EEEEECCHHHHHTTSS
T ss_pred EECCCCCEEEEEE-CCeEEEEECCCCceE-----EEecCCC--CC----------c--------eECcccceeEEEEecc
Confidence 67665 466665 489999998764421 1100000 00 0 001111 2
Q ss_pred ceeEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCceEEEeeecc-----C
Q 044557 144 AVSALALTKDETLLYSVSWDR----------------------------------TIKIWRTSDFKCLESITNA-----H 184 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~----------------------------------~i~iwd~~~~~~~~~~~~~-----h 184 (362)
.+.+++|+|||+.|+.++.|+ .|++||+.+++....+... +
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 347899999999999987653 7999999888754444321 3
Q ss_pred cccEEEEEEcCCCcEE-EEe----CCCeEEEEeCCCCCCcceeehhhhccccce----eEEEEecCCCEEEE--EcCCC-
Q 044557 185 DDAINAVALSDDGDVY-TGS----ADKKIKVWRRSPGNKKHSLVDVLERHNSGI----NALALSCDGSVLYS--GACDR- 252 (362)
Q Consensus 185 ~~~v~~v~~~~~~~~~-s~~----~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v----~~i~~s~~~~~l~s--~~~d~- 252 (362)
...+..++|+|+|+++ +.. .+..|.+||+.++...... . ..+...+ ..++|+|||+.|+. +..|+
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~-~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH-E--DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE-E--EECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE-E--eccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 5678999999999844 443 2357999999876532211 1 1223333 37899999997775 45667
Q ss_pred -----cEEEEeccCCCCcEEEEEeecCccceeE-EEEEeCC--eEEEe-eCC--CcEEEeeCCCCceeeeeEecC---CC
Q 044557 253 -----SIIVWEKEEDDGNILVVGALRGHTKSIL-CMAVVSD--LVCSG-SAD--KTIRIWRGIDRNYTCLAVLEG---HR 318 (362)
Q Consensus 253 -----~i~~wd~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~--~~~s~-s~D--~~i~~W~~~~~~~~~~~~l~~---h~ 318 (362)
.|.+||........ ....+..+...+. .++|+++ .|+.. ..| +.++||+...........+.+ |.
T Consensus 331 ~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 409 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSND-NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVEN 409 (723)
T ss_dssp SSCEEEEEEECSSCCSSSC-CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSS
T ss_pred CcceeEEEEEeccCCCCcc-ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCC
Confidence 46667622222100 0112222223333 3577754 66544 444 889999864322212333443 67
Q ss_pred CcEEEEEeeecCC
Q 044557 319 GPVKCLAAAIDND 331 (362)
Q Consensus 319 ~~v~~~~~~~~~~ 331 (362)
..+..++|+|+++
T Consensus 410 ~~~~~~~~spdg~ 422 (723)
T 1xfd_A 410 CTYFSASFSHSMD 422 (723)
T ss_dssp CCCCEEEECTTSS
T ss_pred CCeEEEEECCCCC
Confidence 7888999988765
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=156.46 Aligned_cols=273 Identities=11% Similarity=0.038 Sum_probs=168.4
Q ss_pred eeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc---eeEEEEEcCc--eeEEEec---------C
Q 044557 24 SLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG---AVKSLVVLAD--KLFSAHQ---------D 87 (362)
Q Consensus 24 ~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~--~l~s~~~---------d 87 (362)
++.| ++++++++ .|++|++||+.+..... .. ..+.. .+.++.+++| .|+.++. +
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~--~~-------~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYT--IL-------SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT 89 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEE--EE-------CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEE--EE-------ccccccccceeeEEECCCCCeEEEEecCceeEEeecc
Confidence 5666 36555554 69999999987643211 00 00111 2667777765 4666655 7
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
++|++||+..++.... .. ....+..++|+|||+.||.++ |+.|+
T Consensus 90 ~~i~~~d~~~g~~~~~-----~~------------------------------l~~~~~~~~~SPDG~~la~~~-~~~i~ 133 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRG-----NE------------------------------LPRPIQYLCWSPVGSKLAYVY-QNNIY 133 (719)
T ss_dssp EEEEEEETTTTEECCS-----SC------------------------------CCSSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred eEEEEEECCCCccccc-----ee------------------------------cCcccccceECCCCCEEEEEE-CCeEE
Confidence 8999999876431000 00 013467789999999999886 78999
Q ss_pred EEECCCceEEEeeeccCcccE-----------------EEEEEcCCCc-EEEEeCCC-----------------------
Q 044557 168 IWRTSDFKCLESITNAHDDAI-----------------NAVALSDDGD-VYTGSADK----------------------- 206 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v-----------------~~v~~~~~~~-~~s~~~dg----------------------- 206 (362)
+|++.+++..+....++...+ .+++|+|||+ |++++.|.
T Consensus 134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 999988876543323333322 4799999997 66665442
Q ss_pred -----------eEEEEeCCCCCCc--ceee--hhhhccccceeEEEEecCCCEEEEEcCC----CcEEEEe----ccCCC
Q 044557 207 -----------KIKVWRRSPGNKK--HSLV--DVLERHNSGINALALSCDGSVLYSGACD----RSIIVWE----KEEDD 263 (362)
Q Consensus 207 -----------~i~iw~~~~~~~~--~~~~--~~~~~h~~~v~~i~~s~~~~~l~s~~~d----~~i~~wd----~~~~~ 263 (362)
.|++||+.++... ..+. ..+..|...+..++|+||++.+++.... ..|.+|| ..+++
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 7889998765321 0111 2345678889999999998877774432 2488888 54422
Q ss_pred CcEEEEEee----cCccceeE-----EEEEeCC--e--EEEeeCCCc--EEEeeCCCCceeeeeEecCCCCcEEEEEeee
Q 044557 264 GNILVVGAL----RGHTKSIL-----CMAVVSD--L--VCSGSADKT--IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI 328 (362)
Q Consensus 264 ~~~~~~~~~----~~h~~~v~-----~~~~~~~--~--~~s~s~D~~--i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~ 328 (362)
.. ..+ .+|...+. .+.|+++ . +++...|+. |.+|+..... ...+..+...|..+.+.
T Consensus 294 ~~----~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---~~~lt~~~~~v~~~~~~- 365 (719)
T 1z68_A 294 CP----KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---AIQITSGKWEAINIFRV- 365 (719)
T ss_dssp CC----GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---CEECSCSSSCEEEEEEE-
T ss_pred eE----EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---eEecccCceEEEEEEEE-
Confidence 11 112 35555555 6677754 2 334556665 4445543222 34566666678877775
Q ss_pred cCCccCCCCCceEEEecCC----CCcEEEEeccc
Q 044557 329 DNDRCDSSDTSYLVCSGSL----DCDIKVWQISF 358 (362)
Q Consensus 329 ~~~~~~~~~~~~~l~s~s~----D~~i~~W~~~~ 358 (362)
++ +.+++++.. ++.+++|.+..
T Consensus 366 d~--------~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 366 TQ--------DSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CS--------SEEEEEESCGGGCTTCBEEEEEEC
T ss_pred eC--------CEEEEEEecCCCCCceEEEEEEeC
Confidence 33 345666655 58899998864
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-15 Score=136.93 Aligned_cols=247 Identities=11% Similarity=0.073 Sum_probs=149.5
Q ss_pred eeEEEEEcCc--eeEEEecCCcEEEEecC-CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCcee
Q 044557 70 AVKSLVVLAD--KLFSAHQDHKIRVWKIN-NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVS 146 (362)
Q Consensus 70 ~v~~i~~~~~--~l~s~~~dg~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 146 (362)
.+..+.+.++ .|++++.+ .|.+|++. .+.. ......+ ..+.+.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-----~~~~~~~----------------------------~~g~~~ 86 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-----VHEASHP----------------------------IGGHPR 86 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-----EEEEEEE----------------------------CCSSGG
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-----EEeeEee----------------------------cCCCCc
Confidence 4556666654 48888888 99999985 3211 0000000 001234
Q ss_pred EEEEecCCCE--EEEEE-------------CCCcEEEEECC-CceEEEeee---ccCcccEEEEEEcCCCc-EEEEe-CC
Q 044557 147 ALALTKDETL--LYSVS-------------WDRTIKIWRTS-DFKCLESIT---NAHDDAINAVALSDDGD-VYTGS-AD 205 (362)
Q Consensus 147 ~~~~~~~~~~--l~s~s-------------~d~~i~iwd~~-~~~~~~~~~---~~h~~~v~~v~~~~~~~-~~s~~-~d 205 (362)
.++++|++++ ++++. .++.+.+|++. +++....+. ..+...+.+++|+|+|+ ++++. .+
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~ 166 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC
Confidence 4678999984 55553 68999999997 455433332 12456789999999997 55554 46
Q ss_pred CeEEEEeCC-CCCCcceeehhhh--ccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEE----EEEeec----
Q 044557 206 KKIKVWRRS-PGNKKHSLVDVLE--RHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNIL----VVGALR---- 273 (362)
Q Consensus 206 g~i~iw~~~-~~~~~~~~~~~~~--~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~----~~~~~~---- 273 (362)
+.|++|++. ++.. .....+. .|...+..++|+|||++|++++. +++|.+|+.....+... .+..+.
T Consensus 167 ~~v~~~~~~~~g~~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 244 (365)
T 1jof_A 167 NKLWTHRKLASGEV--ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp TEEEEEEECTTSCE--EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred CEEEEEEECCCCCE--EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence 899999997 5432 1111121 23456889999999999988775 78999998754333321 222332
Q ss_pred Cccc------eeEEEE-EeCC--eEEEeeC-CC-----cEEEeeCCC-Cceeeee-EecCCCCcEEEEEeeecCCccCCC
Q 044557 274 GHTK------SILCMA-VVSD--LVCSGSA-DK-----TIRIWRGID-RNYTCLA-VLEGHRGPVKCLAAAIDNDRCDSS 336 (362)
Q Consensus 274 ~h~~------~v~~~~-~~~~--~~~s~s~-D~-----~i~~W~~~~-~~~~~~~-~l~~h~~~v~~~~~~~~~~~~~~~ 336 (362)
+|.. .+..++ ++++ +++++.. +. .|++|+... .....+. .+..+...+..++|+|..-
T Consensus 245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~----- 319 (365)
T 1jof_A 245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW----- 319 (365)
T ss_dssp CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT-----
T ss_pred CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc-----
Confidence 2232 577888 8765 5555443 23 899998642 2222111 2333555566778887210
Q ss_pred CCceEEEecCC-CCcEEEEeccc
Q 044557 337 DTSYLVCSGSL-DCDIKVWQISF 358 (362)
Q Consensus 337 ~~~~~l~s~s~-D~~i~~W~~~~ 358 (362)
++.+|++++. +++|++|+++.
T Consensus 320 -dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 320 -SDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp -CTTEEEEECSSSCEEEEEEEET
T ss_pred -CCCEEEEEEcCCCeEEEEEEch
Confidence 1234656554 58999999853
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-15 Score=135.20 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=143.6
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE-
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY- 158 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~- 158 (362)
.+++++.+++|.+||+.++... ..++ .+....+..++|+|++++++
T Consensus 13 ~~v~~~~~~~v~~~d~~~~~~~-------~~~~--------------------------~~~~~~~~~~~~s~dg~~~~v 59 (349)
T 1jmx_B 13 YMIVTNYPNNLHVVDVASDTVY-------KSCV--------------------------MPDKFGPGTAMMAPDNRTAYV 59 (349)
T ss_dssp EEEEEETTTEEEEEETTTTEEE-------EEEE--------------------------CSSCCSSCEEEECTTSSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCcEE-------EEEe--------------------------cCCCCCCceeEECCCCCEEEE
Confidence 3678889999999998654210 0000 00111356789999998655
Q ss_pred EEECCCcEEEEECCCceEEEeeeccC-----cccEEEEEEcCCCc-EEEEeCC------------CeEEEEeCCCCCCcc
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAH-----DDAINAVALSDDGD-VYTGSAD------------KKIKVWRRSPGNKKH 220 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h-----~~~v~~v~~~~~~~-~~s~~~d------------g~i~iw~~~~~~~~~ 220 (362)
++..++.|.+||+.+++.+..+...+ ...+..++|+|+|+ +++++.+ +.|.+||+.++....
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 55578999999999988776665333 23367899999997 6666654 899999987643221
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc------------------------
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT------------------------ 276 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~------------------------ 276 (362)
..... .+...+.+++|+|||+ +++++. .|++||..+.+.. ..+..+.
T Consensus 140 -~~~~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (349)
T 1jmx_B 140 -PVRTF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYT----VALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 210 (349)
T ss_dssp -CSEEE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEE----EEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred -eeeec-cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCcee----ccccccccCCccccCccceeeecCCCcceeE
Confidence 11111 2344688899999999 666654 4999998754311 1111110
Q ss_pred --------------------------------------------ceeEEEEEeC-C--eEEEeeCCCcEEEeeCCCCcee
Q 044557 277 --------------------------------------------KSILCMAVVS-D--LVCSGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 277 --------------------------------------------~~v~~~~~~~-~--~~~s~s~D~~i~~W~~~~~~~~ 309 (362)
..+..+++++ + +++++ ++.|.+|+... .+
T Consensus 211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~--~~ 286 (349)
T 1jmx_B 211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ--RK 286 (349)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT--TE
T ss_pred EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc--Ce
Confidence 1223444445 3 56655 88999999643 44
Q ss_pred eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 310 CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 310 ~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+..+.. ...+.+++|+|+++ +|++++.|+.|++||+..
T Consensus 287 ~~~~~~~-~~~~~~~~~s~dg~---------~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 287 LIKAANL-DHTYYCVAFDKKGD---------KLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEEEEEC-SSCCCEEEECSSSS---------CEEEESBSSEEEEEETTT
T ss_pred EEEEEcC-CCCccceEECCCCC---------EEEEecCCCeEEEEeccc
Confidence 4555542 23467889987653 355677889999999863
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.2e-16 Score=147.24 Aligned_cols=226 Identities=11% Similarity=0.099 Sum_probs=151.2
Q ss_pred ceeEEEEEcCc--eeEEEec-CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 69 GAVKSLVVLAD--KLFSAHQ-DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 69 ~~v~~i~~~~~--~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
.++.++.+++| .|+.++. ||++++|+++.+.. ..+. .++...+
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~--------~~lt--------------------------~~~~~~~ 67 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET--------VKLN--------------------------REPINSV 67 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE--------EECC--------------------------SSCCSEE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCc--------Eeee--------------------------ccccccc
Confidence 35667766544 5777766 99999999743221 0000 0122467
Q ss_pred eEEEEecCCCEEEEEEC---CCcEEEEECCC---ceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCC
Q 044557 146 SALALTKDETLLYSVSW---DRTIKIWRTSD---FKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~---d~~i~iwd~~~---~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~ 217 (362)
..++|+|| +++++++. +...++|.+.. +... .+... ..+...+|+|+|+ +++.+.++.+.+||+.++.
T Consensus 68 ~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~ 143 (582)
T 3o4h_A 68 LDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG 143 (582)
T ss_dssp CEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred ccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence 88899999 88888775 55566765432 2222 23222 2334567777774 4444444555599998764
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCC----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEE
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACD----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCS 291 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s 291 (362)
.. .+ ..+.. .+++|+|||++|++++.| +.|++||+.+++. ..+.+|...+...+|+++ .+++
T Consensus 144 ~~-~l----~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-----~~l~~~~~~~~~~~~SpDG~~l~~ 211 (582)
T 3o4h_A 144 LR-EL----ARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-----RVFDSGEGSFSSASISPGMKVTAG 211 (582)
T ss_dssp EE-EE----EEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-----EEECCSSCEEEEEEECTTSCEEEE
T ss_pred EE-Ee----ecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-----eEeecCCCccccceECCCCCEEEE
Confidence 22 11 12222 789999999999988887 7899999876542 245678888899999876 7888
Q ss_pred eeCCC--cEEEeeCCCCceeeeeEecCCCCcEEEEE--------eeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 292 GSADK--TIRIWRGIDRNYTCLAVLEGHRGPVKCLA--------AAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 292 ~s~D~--~i~~W~~~~~~~~~~~~l~~h~~~v~~~~--------~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+..|+ .|++|+.... ... .+.+|...+..++ |+|++ .++++++.|++++||++
T Consensus 212 ~~~~~~~~i~~~d~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~spdg---------~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 212 LETAREARLVTVDPRDG--SVE-DLELPSKDFSSYRPTAITWLGYLPDG---------RLAVVARREGRSAVFID 274 (582)
T ss_dssp EECSSCEEEEEECTTTC--CEE-ECCCSCSHHHHHCCSEEEEEEECTTS---------CEEEEEEETTEEEEEET
T ss_pred ccCCCeeEEEEEcCCCC--cEE-EccCCCcChhhhhhccccceeEcCCC---------cEEEEEEcCCcEEEEEE
Confidence 88888 8999986443 333 6778887777666 76543 57899999999999997
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-15 Score=132.39 Aligned_cols=220 Identities=12% Similarity=0.057 Sum_probs=142.8
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC---ceeEEEEecCCCE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD---AVSALALTKDETL 156 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~ 156 (362)
.+++++.+++|.+||+..++. ...+ .... .+..++|+|+++.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~-------~~~~----------------------------~~~~~~~~~~~~~~s~dg~~ 47 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAV-------DKVI----------------------------TIADAGPTPMVPMVAPGGRI 47 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEE-------EEEE----------------------------ECTTCTTCCCCEEECTTSSE
T ss_pred EEEEcCCCCeEEEEECCCCcE-------EEEE----------------------------EcCCCCCCccceEEcCCCCE
Confidence 478889999999999865421 0000 1112 3677899999976
Q ss_pred E-EEEECCCcEEEEECCCceEEEeeeccC----cccEEEEEEcCCCc-EEEEe------------CCCeEEEEeCCCCCC
Q 044557 157 L-YSVSWDRTIKIWRTSDFKCLESITNAH----DDAINAVALSDDGD-VYTGS------------ADKKIKVWRRSPGNK 218 (362)
Q Consensus 157 l-~s~s~d~~i~iwd~~~~~~~~~~~~~h----~~~v~~v~~~~~~~-~~s~~------------~dg~i~iw~~~~~~~ 218 (362)
+ ++++.++.|.+||+.+++.+..+...+ ...+..++|+|+|+ ++++. .++.|.+||+.++..
T Consensus 48 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 127 (337)
T 1pby_B 48 AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR 127 (337)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred EEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE
Confidence 5 455667899999999988776665332 22567899999996 66554 579999999976543
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc--ceeEEEEEeCCeE-EEeeCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT--KSILCMAVVSDLV-CSGSAD 295 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~-~s~s~D 295 (362)
... +. ....+..++|+|+|++|+++ ++.|++||+.+.+ ....+..+. ..+ .+...+..+ +++..+
T Consensus 128 ~~~----~~-~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~----~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~ 195 (337)
T 1pby_B 128 RKA----FE-APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT----LVEDKPIQSWEAET-YAQPDVLAVWNQHESS 195 (337)
T ss_dssp EEE----EE-CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE----EEEEECSTTTTTTT-BCCCBCCCCCCCCTTT
T ss_pred EEE----Ee-CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCc----EeeeeeccccCCCc-eeCCCccEEeeeccCC
Confidence 221 11 23457789999999998888 6899999987542 122232222 222 222222322 233233
Q ss_pred C-----------------------cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 296 K-----------------------TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 296 ~-----------------------~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
+ .|.+|+....... ...+..|...+.+++|+|++. +|+++ |+.|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~---------~l~~~--~~~v~ 263 (337)
T 1pby_B 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKT---------RAFGA--YNVLE 263 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSS---------EEEEE--ESEEE
T ss_pred CceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCC---------EEEEe--CCeEE
Confidence 3 4688886544333 334556777888999987643 45555 79999
Q ss_pred EEeccc
Q 044557 353 VWQISF 358 (362)
Q Consensus 353 ~W~~~~ 358 (362)
+||+..
T Consensus 264 ~~d~~~ 269 (337)
T 1pby_B 264 SFDLEK 269 (337)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 999853
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-14 Score=128.41 Aligned_cols=238 Identities=11% Similarity=0.104 Sum_probs=147.6
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeec-ceeEEEEEcCc--eeE-EEecCCcEEEEecCCCCCCcc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK-GAVKSLVVLAD--KLF-SAHQDHKIRVWKINNQEPDHQ 103 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~--~l~-s~~~dg~i~~w~~~~~~~~~~ 103 (362)
.+.++++++.+++|++||..+... ...+ ..+. .....+.+.++ .++ +...++.|.+||+.+++..
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~--~~~~-------~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~-- 78 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTV--YKSC-------VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT-- 78 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEE--EEEE-------ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--
T ss_pred CCEEEEEeCCCCeEEEEECCCCcE--EEEE-------ecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE--
Confidence 467899999999999999875431 1111 1111 12445666654 354 4456899999998654311
Q ss_pred cceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC------------CcEEEEEC
Q 044557 104 KYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD------------RTIKIWRT 171 (362)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------------~~i~iwd~ 171 (362)
.....+... ......+..++|+|++++|++++.+ +.|.+||+
T Consensus 79 ---~~~~~~~~~-----------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~ 132 (349)
T 1jmx_B 79 ---FHANLSSVP-----------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 132 (349)
T ss_dssp ---EEEESCCST-----------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred ---EEEEccccc-----------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence 000000000 0001235788999999999998865 89999999
Q ss_pred CCceE---EEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh----------------------
Q 044557 172 SDFKC---LESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL---------------------- 226 (362)
Q Consensus 172 ~~~~~---~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~---------------------- 226 (362)
.+++. +.... +...+.+++|+|+|++++++. .|.+||..+++....+....
T Consensus 133 ~~~~~~~~~~~~~--~~~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (349)
T 1jmx_B 133 ADGLEAKPVRTFP--MPRQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 208 (349)
T ss_dssp GGGGGBCCSEEEE--CCSSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred CCccccceeeecc--CCCcccceeECCCCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcce
Confidence 87432 23232 233578899999999666543 49999988765332211000
Q ss_pred ------------------------------------------hccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCC
Q 044557 227 ------------------------------------------ERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 227 ------------------------------------------~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
..+...+..++|+| ||++++++ ++.|.+||+.+.+
T Consensus 209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 00011345677889 99999988 8899999987632
Q ss_pred CcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 264 GNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 264 ~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
.+..+.. ...+.+++++++ .+++++.++.|++|+... .+.+..+.
T Consensus 287 ----~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~--~~~~~~~~ 333 (349)
T 1jmx_B 287 ----LIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT--LEKVKNIK 333 (349)
T ss_dssp ----EEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTT--TEEEEEEE
T ss_pred ----EEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccc--cceeeeee
Confidence 1222222 234667888754 677788899999999643 34444443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=150.19 Aligned_cols=200 Identities=15% Similarity=0.088 Sum_probs=128.9
Q ss_pred ceeEEEEecCCCEEEEEEC---------CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCC
Q 044557 144 AVSALALTKDETLLYSVSW---------DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRS 214 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~---------d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~ 214 (362)
.+.+++|+|||++|+.++. |+.|++||+.+++.+.... ....+..++|+|+|+.++...|+.|++|++.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~--l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE--LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC--CCSSBCCEEECSSTTCEEEEETTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee--cCcccccceECCCCCEEEEEECCeEEEEeCC
Confidence 3788999999999998876 7899999999987631111 1245788999999984433458899999998
Q ss_pred CCCCcceeehhhhcccc-----------------ceeEEEEecCCCEEEEEcCCC-------------------------
Q 044557 215 PGNKKHSLVDVLERHNS-----------------GINALALSCDGSVLYSGACDR------------------------- 252 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~-----------------~v~~i~~s~~~~~l~s~~~d~------------------------- 252 (362)
++.... +. ..++.. ...+++|||||++|++++.|.
T Consensus 139 ~g~~~~-l~--~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 139 GDPPFQ-IT--FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp TSCCEE-CC--CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred CCCcEE-Ee--cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 765321 11 111211 125899999999999988663
Q ss_pred ---------cEEEEeccCCCCc--EEEE--EeecCccceeEEEEEeCC--eEEEee--CCC--cEEEee----CCCCcee
Q 044557 253 ---------SIIVWEKEEDDGN--ILVV--GALRGHTKSILCMAVVSD--LVCSGS--ADK--TIRIWR----GIDRNYT 309 (362)
Q Consensus 253 ---------~i~~wd~~~~~~~--~~~~--~~~~~h~~~v~~~~~~~~--~~~s~s--~D~--~i~~W~----~~~~~~~ 309 (362)
.|++||+..+... ..+. ..+.+|...+..++|+++ ++++.. .++ .|.+|+ .. +.+
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~--~g~ 293 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ--TWD 293 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS--SEE
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC--CCc
Confidence 6788988753210 0110 123467888899999876 445533 222 377777 43 344
Q ss_pred eeeEe----cCCCCcEE-----EEEeeecCCccCCCCCceEEEecCCCCc--EEEEecc
Q 044557 310 CLAVL----EGHRGPVK-----CLAAAIDNDRCDSSDTSYLVCSGSLDCD--IKVWQIS 357 (362)
Q Consensus 310 ~~~~l----~~h~~~v~-----~~~~~~~~~~~~~~~~~~~l~s~s~D~~--i~~W~~~ 357 (362)
+...+ .+|...+. .++|+|+++. -+++++..||. |.+|++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-------l~~~~~~~~g~~~l~~~~~~ 345 (719)
T 1z68_A 294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS-------YYKIFSDKDGYKHIHYIKDT 345 (719)
T ss_dssp CCGGGEEEEECSSSCSSSSSCCCCEECTTSSC-------EEEEEECTTSCEEEEEESSC
T ss_pred eEEEEecccccCCceEccccCCccEECCCCCe-------EEEEEEccCCceEEEEEECC
Confidence 44444 47777776 7788776542 12334555664 5555653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.5e-13 Score=114.73 Aligned_cols=193 Identities=12% Similarity=0.172 Sum_probs=131.2
Q ss_pred CceeEEEE-ecCCCEEEEEEC-CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEE-EeCCCeEEEEeCCCCCCc
Q 044557 143 DAVSALAL-TKDETLLYSVSW-DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYT-GSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~-~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s-~~~dg~i~iw~~~~~~~~ 219 (362)
..+..+++ .++++++++... ++.|++|| .+++.+..+...+...+..+++.|+|.++. ...++.|.+|+.. +...
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 154 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVL 154 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEE
Confidence 45678888 467776666543 89999999 556666655444556789999999998554 4567899999864 3221
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec--CccceeEEEEEeCC--eEEEeeCC
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR--GHTKSILCMAVVSD--LVCSGSAD 295 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~--~~~s~s~D 295 (362)
..+. ...+...+..++++|+|..+++...++.|++|+... .. +..+. ++...+..++++++ ++++...+
T Consensus 155 ~~~~--~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~--~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~ 227 (286)
T 1q7f_A 155 HKFG--CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG---QY--LRQIGGEGITNYPIGVGINSNGEILIADNHN 227 (286)
T ss_dssp EEEE--CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC---CE--EEEESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred EEeC--CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC---CE--EEEEccCCccCCCcEEEECCCCCEEEEeCCC
Confidence 1111 112344678999999999888888899999999742 21 22232 33456788888754 77777777
Q ss_pred C-cEEEeeCCCCceeeeeEecCCC--CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 296 K-TIRIWRGIDRNYTCLAVLEGHR--GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 296 ~-~i~~W~~~~~~~~~~~~l~~h~--~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+ .|++|+.. ...+..+..+. ..+.++++.|++ .++++ +.|++|++|++.
T Consensus 228 ~~~i~~~~~~---g~~~~~~~~~~~~~~~~~i~~~~~g---------~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 228 NFNLTIFTQD---GQLISALESKVKHAQCFDVALMDDG---------SVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp SCEEEEECTT---SCEEEEEEESSCCSCEEEEEEETTT---------EEEEE-ETTTEEEEEECS
T ss_pred CEEEEEECCC---CCEEEEEcccCCCCcceeEEECCCC---------cEEEE-CCCCeEEEEEcc
Confidence 6 99999843 23344454443 347788887643 45666 569999999984
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-14 Score=136.43 Aligned_cols=200 Identities=11% Similarity=0.012 Sum_probs=128.8
Q ss_pred cCceeEEEEecCCCEEEEEECC----------CcEEEEECCC------ceEEEeeeccCcccEEEEEEcCCCc-EEEEeC
Q 044557 142 VDAVSALALTKDETLLYSVSWD----------RTIKIWRTSD------FKCLESITNAHDDAINAVALSDDGD-VYTGSA 204 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d----------~~i~iwd~~~------~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~ 204 (362)
...+..++|+|||+.|+.++.| ..|++||+.+ ++.. .+...+...+..++|+|||+ ++.++.
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEEC
Confidence 3456789999999999998877 5899999987 5543 33313445778899999997 665554
Q ss_pred C--------CeEEEEeCC-CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc--EEEEeccCCCCcEEEEEeec
Q 044557 205 D--------KKIKVWRRS-PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS--IIVWEKEEDDGNILVVGALR 273 (362)
Q Consensus 205 d--------g~i~iw~~~-~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~ 273 (362)
+ ..|.+||+. ++. ..........|...+..++|+|||+++++++.|+. |..||...+ .... ...
T Consensus 208 ~~~~~~~~~~~i~~~d~~~~g~-~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~--~~~~--l~~ 282 (662)
T 3azo_A 208 DHPRMPWEGTELKTARVTEDGR-FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG--AATQ--LCR 282 (662)
T ss_dssp CTTCCTTTCEEEEEEEECTTSC-EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC--CEEE--SSC
T ss_pred CCCCCCCCCcEEEEEEECCCCc-ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC--ceee--ccc
Confidence 4 379999998 441 01112222345678899999999998888888884 555554332 2221 122
Q ss_pred Cccce--------eEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEE
Q 044557 274 GHTKS--------ILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC 343 (362)
Q Consensus 274 ~h~~~--------v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 343 (362)
++... +.++++++ .++++++. +.++||....... .+..+..|...+..+. +++++ ..+++
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~-s~~~~-------~~~~~ 352 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG-ELVDAAGPWTEWAATL-TVSGT-------RAVGV 352 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT-EEEECCSSCCEEEEEE-EEETT-------EEEEE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC-cEEEecCCCCeEEEEE-ecCCC-------EEEEE
Confidence 22221 45677764 37888888 9999995422222 2567788888787662 44432 24555
Q ss_pred ecCCCCcEEEEecc
Q 044557 344 SGSLDCDIKVWQIS 357 (362)
Q Consensus 344 s~s~D~~i~~W~~~ 357 (362)
+++.+....+|.++
T Consensus 353 ~~~~~~~~~i~~~d 366 (662)
T 3azo_A 353 AASPRTAYEVVELD 366 (662)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EcCCCCCCEEEEEE
Confidence 66666666666543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-14 Score=127.10 Aligned_cols=202 Identities=11% Similarity=0.120 Sum_probs=129.6
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECC-CceEEEeeeccCcccEEEEEEcCCCc--EE-EEe-------------CCC
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTS-DFKCLESITNAHDDAINAVALSDDGD--VY-TGS-------------ADK 206 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~h~~~v~~v~~~~~~~--~~-s~~-------------~dg 206 (362)
.+..++++|++++|++++.+ .|.+|++. +++..........+.+..++|+|+|+ ++ ++. .+|
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 56789999999999999988 99999987 67654322211112244588999997 33 442 689
Q ss_pred eEEEEeCCC-CCCcceeehhhh-ccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeec--CccceeEE
Q 044557 207 KIKVWRRSP-GNKKHSLVDVLE-RHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALR--GHTKSILC 281 (362)
Q Consensus 207 ~i~iw~~~~-~~~~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~--~h~~~v~~ 281 (362)
.+.+|++.. +... ....... .+...+..++|+|||++|++++. ++.|++|++.. .+....+..+. .|...+..
T Consensus 120 ~v~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 120 YGNVFSVSETGKLE-KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA-SGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp EEEEEEECTTCCEE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-TSCEEEEEEEECSSTTCCEEE
T ss_pred eEEEEccCCCCcCc-ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC-CCCEEEeeeEecCCCCCCCCE
Confidence 999999874 3321 1111111 23456889999999998887754 67999999972 22333333333 23556888
Q ss_pred EEEeCC--eEEEee-CCCcEEEeeCCCCceee------eeEe----cCCCC------cEEEEE-eeecCCccCCCCCceE
Q 044557 282 MAVVSD--LVCSGS-ADKTIRIWRGIDRNYTC------LAVL----EGHRG------PVKCLA-AAIDNDRCDSSDTSYL 341 (362)
Q Consensus 282 ~~~~~~--~~~s~s-~D~~i~~W~~~~~~~~~------~~~l----~~h~~------~v~~~~-~~~~~~~~~~~~~~~~ 341 (362)
++|+++ ++++++ .++.|.+|+......+. +..+ .+|.. .+..++ |+|+++ +
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~---------~ 268 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK---------Y 268 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---------E
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC---------E
Confidence 999865 566555 47899999754322221 2222 23333 588899 887653 3
Q ss_pred EEecCC-CC-----cEEEEecc
Q 044557 342 VCSGSL-DC-----DIKVWQIS 357 (362)
Q Consensus 342 l~s~s~-D~-----~i~~W~~~ 357 (362)
|++++. +. +|++|++.
T Consensus 269 l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 269 MFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEEC
T ss_pred EEEECCCCCCCCCCeEEEEEEC
Confidence 444432 22 89999985
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-13 Score=120.16 Aligned_cols=288 Identities=12% Similarity=0.045 Sum_probs=168.4
Q ss_pred cceeeecccCccceee-----eEe--cCcEEEEecC-CCe--EEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC
Q 044557 9 HHCLTTLKGHNSYVSS-----LAL--AGKFLYTGSS-DNE--VRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA 78 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~-----l~~--~~~~l~t~s~-Dg~--i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 78 (362)
...+..|..|...... ..| +|++|+.++. ++. |.+||+.+...... . ..+...+..+.+++
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l--t-------~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL--T-------EGRGDNTFGGFLSP 90 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC--C-------CSSCBCSSSCEECT
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe--e-------eCCCCCccceEEcC
Confidence 4456677777766655 556 4888888877 774 77778765321110 0 01111222334554
Q ss_pred c--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCcee--EEEEecCC
Q 044557 79 D--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVS--ALALTKDE 154 (362)
Q Consensus 79 ~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~ 154 (362)
+ .|+.++.++.|.+||+..++.. .+... +...+. ...++|++
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~-----~~~~~-----------------------------~~~~~~~~~~~~~~dg 136 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEEN-----VVYQV-----------------------------PAEWVGYGTWVANSDC 136 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEE-----EEEEC-----------------------------CTTEEEEEEEEECTTS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcce-----eeeec-----------------------------hhhcccccceeECCCC
Confidence 4 5888888999999998765421 11111 111121 12347888
Q ss_pred CEEEEE----------------------ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeC------
Q 044557 155 TLLYSV----------------------SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSA------ 204 (362)
Q Consensus 155 ~~l~s~----------------------s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~------ 204 (362)
++++.. ..+..|.+||+.+++... +. .+...+..++|+| +|+ ++....
T Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~ 214 (388)
T 3pe7_A 137 TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-IL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLV 214 (388)
T ss_dssp SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EE-EESSCEEEEEEETTEEEEEEEEECSCTTTS
T ss_pred CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-ee-cCCccccccEECCCCCCEEEEEEecCCCCC
Confidence 887643 244789999999886543 32 3556788999999 887 554443
Q ss_pred CCeEEEEeCCCCCCcceeehhhhccc--cceeEEEEecCCCEEEEEcC-CC----cEEEEeccCCCCcEEEEEeecCccc
Q 044557 205 DKKIKVWRRSPGNKKHSLVDVLERHN--SGINALALSCDGSVLYSGAC-DR----SIIVWEKEEDDGNILVVGALRGHTK 277 (362)
Q Consensus 205 dg~i~iw~~~~~~~~~~~~~~~~~h~--~~v~~i~~s~~~~~l~s~~~-d~----~i~~wd~~~~~~~~~~~~~~~~h~~ 277 (362)
...|.+++...+.. ..+ ..+. ..+..++|+|||+.|+..+. ++ .|++||+.+++. ..+..+.++..
T Consensus 215 ~~~l~~~d~~~~~~-~~l----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~ 287 (388)
T 3pe7_A 215 DARMWLINEDGTNM-RKV----KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--RQLTSMPACSH 287 (388)
T ss_dssp SCSEEEEETTSCCC-EES----CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--EEEEEECCEEE
T ss_pred cceEEEEeCCCCce-EEe----eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--EEEEcCCCcee
Confidence 23677788765432 112 1222 35778899999998765443 22 399999986542 23333443211
Q ss_pred ee-----EEEEEeCCeEEEe---------eCCCcEEEeeCCCCceeeeeEecCCCC-----------cEEEEEeeecCCc
Q 044557 278 SI-----LCMAVVSDLVCSG---------SADKTIRIWRGIDRNYTCLAVLEGHRG-----------PVKCLAAAIDNDR 332 (362)
Q Consensus 278 ~v-----~~~~~~~~~~~s~---------s~D~~i~~W~~~~~~~~~~~~l~~h~~-----------~v~~~~~~~~~~~ 332 (362)
.. ..+...+..++.. ..+..|.+|+..... +..+..|.. .+..++|+|+++
T Consensus 288 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~- 363 (388)
T 3pe7_A 288 LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT---QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDK- 363 (388)
T ss_dssp EEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE---EEEEEECCCCCCCBTTBSSTTCCCCEECTTSS-
T ss_pred eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc---eEEeccccCcccccccccccCCCCccCCCCCC-
Confidence 11 1233344444422 556789999965432 344555555 567778876653
Q ss_pred cCCCCCceEEEecCCCCcEEEEecccC
Q 044557 333 CDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 333 ~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.++.++..++...||.+..+
T Consensus 364 -------~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 364 -------QILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp -------EEEEEECTTSSCEEEEEECC
T ss_pred -------EEEEEecCCCceeEEEEECC
Confidence 45556667888888887654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-11 Score=109.26 Aligned_cols=204 Identities=9% Similarity=0.045 Sum_probs=138.3
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCce-EEEeee--------ccCcccEEEEEEcC-CCcEEEEe--CCCeEE
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-CLESIT--------NAHDDAINAVALSD-DGDVYTGS--ADKKIK 209 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~--------~~h~~~v~~v~~~~-~~~~~s~~--~dg~i~ 209 (362)
......++++|+++++++...++.|++|+..... .+..+. ..+......++++| ++.++.+. .++.|+
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 3467889999999988888889999999986542 333332 23444688999999 78865544 589999
Q ss_pred EEeCCCCCCcceeehhh------hccccceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE
Q 044557 210 VWRRSPGNKKHSLVDVL------ERHNSGINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM 282 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~------~~h~~~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~ 282 (362)
+|+. ++.....+...- ..+-.....|+++|+ +..+++...+++|++|+..+++ ....-...++...+..+
T Consensus 170 ~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 170 QFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--FVREIKHASFGRNVFAI 246 (329)
T ss_dssp EECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--EEEEECCTTTTTCEEEE
T ss_pred EEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc--EEEEEeccccCCCccee
Confidence 9994 343222111000 112234788999998 7777777889999999987432 22221223455667778
Q ss_pred EEeCCeEE--------EeeCCCcEEEeeCCCCceeeeeEe---cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcE
Q 044557 283 AVVSDLVC--------SGSADKTIRIWRGIDRNYTCLAVL---EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351 (362)
Q Consensus 283 ~~~~~~~~--------s~s~D~~i~~W~~~~~~~~~~~~l---~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i 351 (362)
++.+.+++ +.+.+..|++|+... ...+..+ .+|...+.++++++++ .++++.+.++.|
T Consensus 247 ~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~--g~~~~~~~~~~~~~~~p~~ia~~~dG---------~lyvad~~~~~I 315 (329)
T 3fvz_A 247 SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS--GEIIDVFKPVRKHFDMPHDIVASEDG---------TVYIGDAHTNTV 315 (329)
T ss_dssp EEETTEEEEEECCCCTTCSCCCCEEEEETTT--CCEEEEECCSSSCCSSEEEEEECTTS---------EEEEEESSSCCE
T ss_pred eecCCEEEEeCCCEEeccCCCcEEEEEEcCC--CeEEEEEcCCCCccCCeeEEEECCCC---------CEEEEECCCCEE
Confidence 77765332 233456899998543 4455565 4778889999997653 578888899999
Q ss_pred EEEecccC
Q 044557 352 KVWQISFP 359 (362)
Q Consensus 352 ~~W~~~~~ 359 (362)
++|++...
T Consensus 316 ~~~~~~~~ 323 (329)
T 3fvz_A 316 WKFTLTEK 323 (329)
T ss_dssp EEEEEEEC
T ss_pred EEEeCCcc
Confidence 99998643
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-12 Score=121.73 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=103.5
Q ss_pred CceeEEEEecCCCEEEEEECCC--------cEEEEECC-Cc--eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC--eE
Q 044557 143 DAVSALALTKDETLLYSVSWDR--------TIKIWRTS-DF--KCLESITNAHDDAINAVALSDDGD-VYTGSADK--KI 208 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~--------~i~iwd~~-~~--~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg--~i 208 (362)
..+..++|+|||++|+.++.++ .|.+||+. ++ .....+...|...+..++|+|+|+ ++++..++ .|
T Consensus 188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l 267 (662)
T 3azo_A 188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNL 267 (662)
T ss_dssp SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEE
T ss_pred CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEE
Confidence 3456678999999999887653 79999998 56 233344445567899999999998 45666778 56
Q ss_pred EEEeCCCCCCcceeehhhhccccc--------eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeE
Q 044557 209 KVWRRSPGNKKHSLVDVLERHNSG--------INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSIL 280 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~~~~~~h~~~--------v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~ 280 (362)
.+||+.++... .+ ...+... +..++|+|+++.+++++. +.+++|.+....+. +..+..|...+.
T Consensus 268 ~~~~~~~~~~~-~l---~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~---~~~l~~~~~~~~ 339 (662)
T 3azo_A 268 HRVDPATGAAT-QL---CRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE---LVDAAGPWTEWA 339 (662)
T ss_dssp EEECTTTCCEE-ES---SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE---EEECCSSCCEEE
T ss_pred EEEECCCCcee-ec---ccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc---EEEecCCCCeEE
Confidence 66665444321 11 1112111 567899999999999999 99999955432232 345666777777
Q ss_pred EE-EEeCC--eEEEeeCCCcEEEeeC
Q 044557 281 CM-AVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 281 ~~-~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
.+ +++++ .+++++.+....+|..
T Consensus 340 ~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 340 ATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 77 77776 4556677766677753
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-12 Score=126.78 Aligned_cols=200 Identities=12% Similarity=0.058 Sum_probs=123.5
Q ss_pred eEEEEecCCCEEEEEECC---------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCC
Q 044557 146 SALALTKDETLLYSVSWD---------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d---------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~ 216 (362)
..++|+|||++|+.++.+ +.+.+||+.+++... +. .|...+...+|||+|+.++...|+.|.+|++.++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~-~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~ 142 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EE-RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNL 142 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SS-CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cc-cCCCcceeeEECCCCCEEEEEECCeEEEEECCCC
Confidence 457899999999998876 556799999988643 33 4667899999999998444446899999998876
Q ss_pred CCcceeehhhhcccc-----------------ceeEEEEecCCCEEEEEcCCC---------------------------
Q 044557 217 NKKHSLVDVLERHNS-----------------GINALALSCDGSVLYSGACDR--------------------------- 252 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~-----------------~v~~i~~s~~~~~l~s~~~d~--------------------------- 252 (362)
... .+. ..++.. ....++|||||+.|+.++.|.
T Consensus 143 ~~~-~lt--~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp 219 (740)
T 4a5s_A 143 PSY-RIT--WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP 219 (740)
T ss_dssp CCE-ECC--SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred ceE-EEc--CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCC
Confidence 532 111 111211 123589999999999886443
Q ss_pred ---------cEEEEeccC---CCC-cEEEEEe---ecCccceeEEEEEeCC--eEEEe----eCCCcEEEeeCCCCc--e
Q 044557 253 ---------SIIVWEKEE---DDG-NILVVGA---LRGHTKSILCMAVVSD--LVCSG----SADKTIRIWRGIDRN--Y 308 (362)
Q Consensus 253 ---------~i~~wd~~~---~~~-~~~~~~~---~~~h~~~v~~~~~~~~--~~~s~----s~D~~i~~W~~~~~~--~ 308 (362)
+|++||+.+ +.. ....+.. +.+|...+..++|+++ .++.. +.+..|++|+..... .
T Consensus 220 ~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~ 299 (740)
T 4a5s_A 220 KAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW 299 (740)
T ss_dssp BTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE
T ss_pred CCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccc
Confidence 366777765 321 1111111 1136777888888865 33332 234468999864432 1
Q ss_pred eee--eEe--cCCCCcEE-----EEEeeecCCccCCCCCceEE-EecCCCC--cEEEEeccc
Q 044557 309 TCL--AVL--EGHRGPVK-----CLAAAIDNDRCDSSDTSYLV-CSGSLDC--DIKVWQISF 358 (362)
Q Consensus 309 ~~~--~~l--~~h~~~v~-----~~~~~~~~~~~~~~~~~~~l-~s~s~D~--~i~~W~~~~ 358 (362)
.|. ..+ .+|...|. ..+|+|+++ .++ .....|| .|.+|++..
T Consensus 300 ~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~--------~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 300 NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN--------SFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EECGGGCEEEECSSSCSSSSSCCCCEECTTSS--------EEEEEEECTTSCEEEEEEETTC
T ss_pred ceeEEEEeeeccCCceEccCcCCCceEcCCCC--------EEEEEEEcCCCceEEEEEECCC
Confidence 122 223 56766654 567776653 233 2333444 477777653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-11 Score=107.43 Aligned_cols=263 Identities=13% Similarity=0.113 Sum_probs=158.3
Q ss_pred CCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe----------cCCcEEEEecCCCCCCccc
Q 044557 37 SDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH----------QDHKIRVWKINNQEPDHQK 104 (362)
Q Consensus 37 ~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~----------~dg~i~~w~~~~~~~~~~~ 104 (362)
.|++|.+||..+.. .... +..+..+ .+.++++ .+++++ .+++|.+||....+..
T Consensus 29 ~d~~v~v~D~~t~~--~~~~-------i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~--- 94 (361)
T 2oiz_A 29 TESRVHVYDYTNGK--FLGM-------VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE--- 94 (361)
T ss_dssp GGCEEEEEETTTCC--EEEE-------EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE---
T ss_pred ccCeEEEEECCCCe--EEEE-------ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE---
Confidence 47899999976543 1111 1122333 6667655 588776 3678999998654311
Q ss_pred ceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC--CCcEEEEECCCceEEEe-ee
Q 044557 105 YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW--DRTIKIWRTSDFKCLES-IT 181 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~-~~ 181 (362)
..+...+. . ..+......++++||+++|+++.. ++.|.+||+.+++.+.. +.
T Consensus 95 -~~i~~~~~---~---------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 95 -KEISLPPK---R---------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp -EEEEECTT---B---------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred -EEEEcCcc---c---------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 01110000 0 001223456889999999998874 58999999999988776 53
Q ss_pred ccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceee---hhhhccccceeEEEEecCCCEEEEEcCCCcEEE
Q 044557 182 NAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLV---DVLERHNSGINALALSCDGSVLYSGACDRSIIV 256 (362)
Q Consensus 182 ~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~ 256 (362)
. . ....+.+.|++ .+++.+.||.+.+|+........... ..+.....++ .+.++|++..++..+.++.|.+
T Consensus 150 ~--~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v 225 (361)
T 2oiz_A 150 A--A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYS 225 (361)
T ss_dssp G--T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEE
T ss_pred C--C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEE
Confidence 2 2 22335677766 37888999999999886532211000 1111122222 2344678888888889999999
Q ss_pred EeccCCCCcEEEEEeec--C----cc----ceeEEEEEeC--Ce-EEEee----------CCCcEEEeeCCCCceeeeeE
Q 044557 257 WEKEEDDGNILVVGALR--G----HT----KSILCMAVVS--DL-VCSGS----------ADKTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 257 wd~~~~~~~~~~~~~~~--~----h~----~~v~~~~~~~--~~-~~s~s----------~D~~i~~W~~~~~~~~~~~~ 313 (362)
+|+...... ....+. . +. ....-+++++ .. +++.+ ..+.|.+||.. +.+.+++
T Consensus 226 ~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~--t~~~v~~ 301 (361)
T 2oiz_A 226 ADFSGDEVK--VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK--TKQRVAR 301 (361)
T ss_dssp EECSSSSCE--EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT--TTEEEEE
T ss_pred EEecCCCce--ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC--CCcEEEE
Confidence 998653322 222111 0 00 1111245554 33 34333 13479999954 4567888
Q ss_pred ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 314 LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 314 l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+..+. +.+++|+|+++ +|++++. ++|.+||.+.
T Consensus 302 i~~~~--p~~ia~spdg~---------~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 302 IPGRD--ALSMTIDQQRN---------LMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp EECTT--CCEEEEETTTT---------EEEEECS-SCEEEEECSS
T ss_pred EecCC--eeEEEECCCCC---------EEEEeCC-CeEEEEECCC
Confidence 88777 99999998754 4666665 9999999864
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-11 Score=105.11 Aligned_cols=255 Identities=15% Similarity=0.061 Sum_probs=153.7
Q ss_pred cceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeE-EEecCCcEEEEec
Q 044557 20 SYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLF-SAHQDHKIRVWKI 95 (362)
Q Consensus 20 ~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~-s~~~dg~i~~w~~ 95 (362)
..|.++.++ +..++..+.++.++.|.... ...+ ..+.....++.+.++ .|+ ++..++.|.+|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~ 73 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAEP-----WLEI-------SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINP 73 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECEE-----EEEE-------ESSCCCEEEEEECTTSCEEEEETTTCEEEEECT
T ss_pred cccceeeecCCccceeEEeecccCcccccce-----eEEE-------eccCccccCcEECCCCCEEEEECCCCEEEEEeC
Confidence 346777774 44566667889999993211 1111 112223455666544 354 5667889999987
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC----CcEEEEEC
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD----RTIKIWRT 171 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d----~~i~iwd~ 171 (362)
+.+... .+ ...+...+.+++++|+++++++...+ +.|.+||.
T Consensus 74 ~~~~~~-----~~-----------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 74 ETKEIK-----RP-----------------------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp TTCCEE-----EE-----------------------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred CCCcEE-----EE-----------------------------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 643210 00 00123568899999999988877766 68999998
Q ss_pred CCceEEEeee-ccCcccEEEEEEcCCCcEEEEeCC-------CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 172 SDFKCLESIT-NAHDDAINAVALSDDGDVYTGSAD-------KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 172 ~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~s~~~d-------g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
++++....+. ..+...+.+++++|+|.++.++.. +.|..++..++.. ..+ ..+...+..++|+|+|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~----~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPI----IQNISVANGIALSTDEK 194 (333)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEE----EEEESSEEEEEECTTSS
T ss_pred CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE-EEe----ecCCCcccceEECCCCC
Confidence 8766443222 123456899999999986655542 4555555443321 111 12233577899999998
Q ss_pred EEE-EEcCCCcEEEEeccCCCCcEEE-----EEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 244 VLY-SGACDRSIIVWEKEEDDGNILV-----VGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 244 ~l~-s~~~d~~i~~wd~~~~~~~~~~-----~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
.|+ +.+.++.|.+|+.......... ...+.++ ..+..+++++ .+.++...++.|.+|+.. ...+..+.
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~---g~~~~~~~ 270 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR---GYPIGQIL 270 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT---SCEEEEEE
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC---CCEEEEEE
Confidence 665 4556889999998642222211 1112222 3567788864 367777778999999853 23344443
Q ss_pred CC------CCcEEEEEeeec
Q 044557 316 GH------RGPVKCLAAAID 329 (362)
Q Consensus 316 ~h------~~~v~~~~~~~~ 329 (362)
.+ ...+.+++|+++
T Consensus 271 ~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 271 IPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTGGGTCSCBCCEEEECTT
T ss_pred cCCCccccccCcceEEECCC
Confidence 33 236888888654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-11 Score=104.00 Aligned_cols=198 Identities=10% Similarity=0.136 Sum_probs=136.7
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec-----cCcccEEEEEE-cCCCcEEEEeC--CCeEEEEe
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN-----AHDDAINAVAL-SDDGDVYTGSA--DKKIKVWR 212 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----~h~~~v~~v~~-~~~~~~~s~~~--dg~i~iw~ 212 (362)
+...+.+++++++++++++.+.++.|.+||.. ++.+..+.. .+...+..+++ .+++.++.+.. ++.|.+|+
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 44567899999999988888889999999987 444444421 23456889999 57888666553 89999999
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEE
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVC 290 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~ 290 (362)
. ++.....+ ...+...+..++++|+|+.+++...++.|++||... .........++...+..++++++ +++
T Consensus 107 ~-~g~~~~~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 107 Q-YGQFVRKF---GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---NVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp T-TSCEEEEE---CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred C-CCcEEEEe---cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC---CEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 4 34322111 112335678999999999888888889999999642 22111111244456788888754 677
Q ss_pred EeeCCCcEEEeeCCCCceeeeeEec--CCCCcEEEEEeeecCCccCCCCCceEEEecCCCC-cEEEEeccc
Q 044557 291 SGSADKTIRIWRGIDRNYTCLAVLE--GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC-DIKVWQISF 358 (362)
Q Consensus 291 s~s~D~~i~~W~~~~~~~~~~~~l~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~-~i~~W~~~~ 358 (362)
+.+.++.|++|+... ..+..+. ++...+..+++++++ .++++.+.++ .|++|+...
T Consensus 180 ~~~~~~~i~~~~~~g---~~~~~~~~~g~~~~p~~i~~d~~G---------~l~v~~~~~~~~i~~~~~~g 238 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNG---------EILIADNHNNFNLTIFTQDG 238 (286)
T ss_dssp EEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTC---------CEEEEECSSSCEEEEECTTS
T ss_pred EECCCCEEEEEcCCC---CEEEEEccCCccCCCcEEEECCCC---------CEEEEeCCCCEEEEEECCCC
Confidence 778899999999532 3344453 334678889886543 4677777775 999999653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-11 Score=107.54 Aligned_cols=209 Identities=15% Similarity=0.108 Sum_probs=139.6
Q ss_pred cCceeEEEEecCCCEEEEEECC------------------------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCC
Q 044557 142 VDAVSALALTKDETLLYSVSWD------------------------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDG 197 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d------------------------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~ 197 (362)
.+.+.+++++|+++++++.+.+ ++|.+||..+++.+..+...+......++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3578999999999999888877 4799999988887766654555678999999999
Q ss_pred cE-EEEeCCCeEEEEeCCCCC-Ccceeehhh-----hccccceeEEEEec-CCCEEEEEc-CCCcEEEEeccCCCCcEEE
Q 044557 198 DV-YTGSADKKIKVWRRSPGN-KKHSLVDVL-----ERHNSGINALALSC-DGSVLYSGA-CDRSIIVWEKEEDDGNILV 268 (362)
Q Consensus 198 ~~-~s~~~dg~i~iw~~~~~~-~~~~~~~~~-----~~h~~~v~~i~~s~-~~~~l~s~~-~d~~i~~wd~~~~~~~~~~ 268 (362)
.+ ++...++.|++|+..... ....+.... ..+......|+++| +|..+++.+ .++.|++|+.. +. ....
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~-~~~~ 180 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GK-FVTQ 180 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SC-EEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CC-EEEE
Confidence 85 456678999999975431 111111000 23344678999999 788888886 69999999943 22 1111
Q ss_pred EEee-------cCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEe--cCCCCcEEEEEeeecCCccCCC
Q 044557 269 VGAL-------RGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVL--EGHRGPVKCLAAAIDNDRCDSS 336 (362)
Q Consensus 269 ~~~~-------~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~~~~~ 336 (362)
+... .++......++++++ ++++.+.++.|++|+.. .++.+..+ .++...+.+++++| +.. ..
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~p-g~~--~~ 255 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD--TKEFVREIKHASFGRNVFAISYIP-GFL--FA 255 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT--TCCEEEEECCTTTTTCEEEEEEET-TEE--EE
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC--CCcEEEEEeccccCCCcceeeecC-CEE--EE
Confidence 1111 123334678888643 67888889999999964 23445555 45677888898887 211 01
Q ss_pred CCceEEEecCCCCcEEEEecc
Q 044557 337 DTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 337 ~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..+.+.++.+.+.+|++|++.
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFS 276 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETT
T ss_pred eCCCEEeccCCCcEEEEEEcC
Confidence 112234455566688888863
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.8e-11 Score=105.57 Aligned_cols=181 Identities=10% Similarity=0.120 Sum_probs=115.7
Q ss_pred eeEEEEecCCCEEEEEECC---------------------------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCC
Q 044557 145 VSALALTKDETLLYSVSWD---------------------------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDG 197 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d---------------------------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~ 197 (362)
+..++|+||++.|+.++.+ ..|.+||+.+++.+..+.. . .+..++|+|+|
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg 182 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK 182 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe
Confidence 7889999999988887642 5799999998876444543 2 67789999999
Q ss_pred cEEEEeCC------C-eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC--------cEEEEeccCC
Q 044557 198 DVYTGSAD------K-KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR--------SIIVWEKEED 262 (362)
Q Consensus 198 ~~~s~~~d------g-~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~--------~i~~wd~~~~ 262 (362)
.++++..+ . ...+|.+.++. ...+ ..+ ..+..+ +|||++|+.++.++ .|.+|| ++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l----~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~ 252 (347)
T 2gop_A 183 IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKM----FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK 252 (347)
T ss_dssp EEEEEECCCSSCCSSCCEEEEEEETTE-EEEE----EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS
T ss_pred EEEEEecccccccccccccEEEeCCCc-eEEe----ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC
Confidence 33344443 2 44555444322 1112 223 344443 99999988777543 577777 22
Q ss_pred CCcEEEEEeecCccceeEE-EEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceE
Q 044557 263 DGNILVVGALRGHTKSILC-MAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYL 341 (362)
Q Consensus 263 ~~~~~~~~~~~~h~~~v~~-~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~ 341 (362)
.. .....+|...+.. +.|+..++++++.|+.++|| ... ... ..+..+...|.++++++ .+
T Consensus 253 --~~--~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~--g~~-~~~~~~~~~v~~~~~s~-----------~~ 313 (347)
T 2gop_A 253 --EV--MGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWD--GEI-KPIAKGRHWIMGFDVDE-----------IV 313 (347)
T ss_dssp --CE--EESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EES--SSE-EEEECSSSEEEEEEESS-----------SE
T ss_pred --ce--EeccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcC--Cce-EEEecCCCeEEeeeeeC-----------cE
Confidence 22 2223455666765 77762278899999999999 752 333 33445677888888864 24
Q ss_pred EEecCCCCcE-EEEecc
Q 044557 342 VCSGSLDCDI-KVWQIS 357 (362)
Q Consensus 342 l~s~s~D~~i-~~W~~~ 357 (362)
+++++.++.. +||.++
T Consensus 314 ~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 314 VYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEECSSSCCEEEEES
T ss_pred EEEEcCCCChHHheEeC
Confidence 5666666654 777653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-12 Score=124.80 Aligned_cols=198 Identities=10% Similarity=0.006 Sum_probs=128.5
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcc-----cEEEEEEcCCCc-EEEEeCC---------CeE
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD-----AINAVALSDDGD-VYTGSAD---------KKI 208 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~-----~v~~v~~~~~~~-~~s~~~d---------g~i 208 (362)
...++.|+||+++++++ |+.|++||+.++++...+. .|.. ....++|||||+ ++.++.+ +.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 34578999999999886 9999999999988765443 4432 224478999998 5665554 567
Q ss_pred EEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee---------
Q 044557 209 KVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI--------- 279 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v--------- 279 (362)
.+||+.++... .+..|...+...+|||||+.|+.+ .|+.|++|++..+.. . .+ +..++...+
T Consensus 95 ~~~d~~~~~~~-----~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~-~-~l-t~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 95 DIYDLNKRQLI-----TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS-Y-RI-TWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp EEEETTTTEEC-----CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC-E-EC-CSCCBTTTEEESBCCHHH
T ss_pred EEEECCCCcEE-----EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCce-E-EE-cCCCCccceecCcccccc
Confidence 79999876422 234567789999999999999888 478999999876442 1 11 122332222
Q ss_pred --------EEEEEeCC--eEEEeeCCC------------------------------------cEEEeeCCC---Cceee
Q 044557 280 --------LCMAVVSD--LVCSGSADK------------------------------------TIRIWRGID---RNYTC 310 (362)
Q Consensus 280 --------~~~~~~~~--~~~s~s~D~------------------------------------~i~~W~~~~---~~~~~ 310 (362)
..+.|+++ .|+.++.|. .|++|+... .....
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 23667765 677665433 366677543 21001
Q ss_pred eeEec------CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 311 LAVLE------GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 311 ~~~l~------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...+. +|...+..++|+|+++... ..+..++.+..|++||+..
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~-----~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISL-----QWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEE-----EEEESSTTEEEEEEEEEET
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEE-----EEeCCCCCEEEEEEEECCC
Confidence 12232 4888899999998754100 0122234556799999753
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.7e-11 Score=104.32 Aligned_cols=265 Identities=12% Similarity=0.038 Sum_probs=159.5
Q ss_pred cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEec-CCcEEEEecCCCCCCcccceeeeeccCC
Q 044557 36 SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQ-DHKIRVWKINNQEPDHQKYTRLATLPTL 114 (362)
Q Consensus 36 s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 114 (362)
+.+++|.++|.++.+.........+.. ..+ .....+.+.+++++.+.. ++.|.+||..+.+.. ..+
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~--~lg-~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~-------~~i--- 80 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGF--KLG-DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEV-------GRI--- 80 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSS--CCB-SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEE-------EEE---
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCc--ccC-ccceEEEEECCEEEEEEcCCCEEEEEECcccEEE-------EEc---
Confidence 348999999987643211100000000 001 123455566777666654 689999998764421 000
Q ss_pred CchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCc----ccEEE
Q 044557 115 GDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD----DAINA 190 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~----~~v~~ 190 (362)
........++++++++++++...++.|.+||..+++....+..+.. .....
T Consensus 81 -------------------------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~ 135 (328)
T 3dsm_A 81 -------------------------TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQ 135 (328)
T ss_dssp -------------------------ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCC
T ss_pred -------------------------CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcce
Confidence 1123457888988886555544899999999999987766653321 13456
Q ss_pred EEEcCCCcEEEEe--CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC----------CcEEEEe
Q 044557 191 VALSDDGDVYTGS--ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD----------RSIIVWE 258 (362)
Q Consensus 191 v~~~~~~~~~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d----------~~i~~wd 258 (362)
+++ .+++++.+. .++.|.++|..++.....+ .. ......++++|+|++++++..+ +.|.++|
T Consensus 136 i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i----~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id 209 (328)
T 3dsm_A 136 MVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL----TI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID 209 (328)
T ss_dssp EEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE----EC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred EEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE----Ec-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEE
Confidence 777 566666555 4899999999876533222 11 2234678899999977776655 7899999
Q ss_pred ccCCCCcEEEEEeecCc-cceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCC
Q 044557 259 KEEDDGNILVVGALRGH-TKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDS 335 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h-~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~ 335 (362)
..+.+ +...+.-. ......+++++ +.+..+.. .|.+||....+......+..+.....+++++|++
T Consensus 210 ~~t~~----v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~----- 278 (328)
T 3dsm_A 210 AETFT----VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN----- 278 (328)
T ss_dssp TTTTE----EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT-----
T ss_pred CCCCe----EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC-----
Confidence 87532 22222211 23567888885 35544443 8889986433221111122224568888887643
Q ss_pred CCCceEEEec----CCCCcEEEEeccc
Q 044557 336 SDTSYLVCSG----SLDCDIKVWQISF 358 (362)
Q Consensus 336 ~~~~~~l~s~----s~D~~i~~W~~~~ 358 (362)
+++.++. ..+++|.+||...
T Consensus 279 ---g~lyva~~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 279 ---GEVYVADAIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp ---CCEEEEECTTSSSEEEEEEECTTC
T ss_pred ---CeEEEEcccccccCCEEEEECCCC
Confidence 3456666 6789999999863
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-10 Score=100.60 Aligned_cols=172 Identities=14% Similarity=0.066 Sum_probs=111.7
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec---cCcccEEEEEEcCCCcEEEE-----e-----------
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN---AHDDAINAVALSDDGDVYTG-----S----------- 203 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~s~-----~----------- 203 (362)
..+.+++++|+++++++...++.|.+||..+++....... .....+..++++|+|.++.+ +
T Consensus 69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~ 148 (296)
T 3e5z_A 69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEM 148 (296)
T ss_dssp SSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCC
T ss_pred CCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccc
Confidence 4567899999999888777789999999977764332211 11124567999999986553 2
Q ss_pred --CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcE-EEEEeecCccceeE
Q 044557 204 --ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI-LVVGALRGHTKSIL 280 (362)
Q Consensus 204 --~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~h~~~v~ 280 (362)
..+.|..++.. +. ... +..+......++|+|||+.|++.+.++.|.+|++... +.. .....+..+...+.
T Consensus 149 ~~~~~~l~~~~~~-g~-~~~----~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~p~ 221 (296)
T 3e5z_A 149 ELPGRWVFRLAPD-GT-LSA----PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNAR-GETEYQGVHFTVEPGKTD 221 (296)
T ss_dssp CSSSCEEEEECTT-SC-EEE----EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSS-SCEEEEEEEECCSSSCCC
T ss_pred cCCCcEEEEECCC-CC-EEE----eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCC-CcCcCCCeEeeCCCCCCC
Confidence 13455555543 22 111 1234455688999999999988888999999998632 222 11111223445566
Q ss_pred EEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 281 CMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 281 ~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
.++++++ +.++. ++.|.+|+.. .+.+..+..+.. +.+++|.
T Consensus 222 ~i~~d~~G~l~v~~--~~~v~~~~~~---g~~~~~~~~~~~-~~~~~f~ 264 (296)
T 3e5z_A 222 GLRVDAGGLIWASA--GDGVHVLTPD---GDELGRVLTPQT-TSNLCFG 264 (296)
T ss_dssp SEEEBTTSCEEEEE--TTEEEEECTT---SCEEEEEECSSC-CCEEEEE
T ss_pred eEEECCCCCEEEEc--CCeEEEECCC---CCEEEEEECCCC-ceeEEEE
Confidence 7777654 44444 8899999853 345666777777 8889885
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.4e-12 Score=112.91 Aligned_cols=301 Identities=10% Similarity=-0.016 Sum_probs=160.9
Q ss_pred ceeeecccCccc-----eeeeEe--cCcEEEEecC-C--CeEEEeecCCCCcccceeeeccceeEEeecce-eEEEEEcC
Q 044557 10 HCLTTLKGHNSY-----VSSLAL--AGKFLYTGSS-D--NEVRSWDCNTFSSELDQEFLSNNNIVAVGKGA-VKSLVVLA 78 (362)
Q Consensus 10 ~~~~tl~gH~~~-----V~~l~~--~~~~l~t~s~-D--g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~ 78 (362)
+.+..|..+... +.++.| +|++|+.... + ..|.+||+.+..... .. .+... ...+.+++
T Consensus 21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~---l~-------~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 21 VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ---LT-------EGKGDNTFGGFIST 90 (396)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE---CC-------CSSCBCTTTCEECT
T ss_pred cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE---ee-------cCCCCccccceECC
Confidence 345556555433 677777 4777766543 3 467888876532110 00 01111 11134444
Q ss_pred --ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCE
Q 044557 79 --DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL 156 (362)
Q Consensus 79 --~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 156 (362)
+.|+.++.++.|.+|++..++.. .+...+.. +.+.+...+.......... ....+.++|+++.
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~-----~~~~~~~~-------~~~~g~~l~~~~~~~~~~~---~~~~~~~spdg~~ 155 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQ-----VIYTVDEE-------WKGYGTWVANSDCTKLVGI---EILKRDWQPLTSW 155 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEE-----EEEECCTT-------EEEEEEEEECTTSSEEEEE---EEEGGGCCCCCSH
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcE-----EEEecccc-------cCCCCCEEEeccCCccccc---cccccccCCCCcc
Confidence 35878888889999998765421 11111100 0000000000000000000 0011346788887
Q ss_pred EEEE-----ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeCC------CeEEEEeCCCCCCcceee
Q 044557 157 LYSV-----SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSAD------KKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 157 l~s~-----s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~d------g~i~iw~~~~~~~~~~~~ 223 (362)
++.+ ..+..|.+||+.+++..... .+...+..+.|+| ++. ++..+.+ ..|.+|++..+.. ..+.
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~ 232 (396)
T 3c5m_A 156 EKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIK 232 (396)
T ss_dssp HHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESS
T ss_pred eeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEee
Confidence 6654 45678999999887754433 3556788999999 675 5554433 4688888765432 1111
Q ss_pred hhhhcc-ccceeEEEEecCCCEEEEEcCC-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEee-
Q 044557 224 DVLERH-NSGINALALSCDGSVLYSGACD-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGS- 293 (362)
Q Consensus 224 ~~~~~h-~~~v~~i~~s~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s- 293 (362)
... ...+..++|+|||++|+.++.+ +.|++||+.++. ...+....++ . ..|++ .+++.++
T Consensus 233 ---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~----~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 233 ---EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE--NEEVMVMPPC----S-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp ---CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC--EEEEEECCSE----E-EEEECSSSSEEEEEEC
T ss_pred ---ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC--eEEeeeCCCC----C-CCccCCCCceEEEecC
Confidence 111 2357889999999988777554 449999987643 2223333332 1 55554 3666543
Q ss_pred ---------------CCCcEEEeeCCCCceeeeeEecCCCC-----------cEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 294 ---------------ADKTIRIWRGIDRNYTCLAVLEGHRG-----------PVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 294 ---------------~D~~i~~W~~~~~~~~~~~~l~~h~~-----------~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
.+..|.+|+..... ...+..|.. .+..++|+|++. ++++++..
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~--------~l~~~s~~ 371 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKS---AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDD--------GVLFTSDF 371 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTB---CCEEEECCCCCCCBTTBSSTTCCCCEECTTSS--------EEEEEECT
T ss_pred CcceeeccccccccCCCCcEEEEecccCc---eEEccCCCCccccccccccCCCCCceEccCCC--------eEEEEecC
Confidence 34779999864332 233444443 144456665432 34445555
Q ss_pred CCcEEEEecccC
Q 044557 348 DCDIKVWQISFP 359 (362)
Q Consensus 348 D~~i~~W~~~~~ 359 (362)
++...||.+...
T Consensus 372 ~~~~~l~~~~~~ 383 (396)
T 3c5m_A 372 EGVPAIYIADVP 383 (396)
T ss_dssp TSSCEEEEEECC
T ss_pred CCCceEEEEEEc
Confidence 777778876543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-11 Score=106.15 Aligned_cols=195 Identities=11% Similarity=-0.021 Sum_probs=120.3
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEE--EcCCCcEEEE--------------------
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVA--LSDDGDVYTG-------------------- 202 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~--~~~~~~~~s~-------------------- 202 (362)
+....|+||++.|+.++.++.|++||+.+++...... .+...+.... ++|++.++.+
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ-VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEF 161 (388)
T ss_dssp SSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred ccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee-chhhcccccceeECCCCCeeccccccCcccccccccchhhhh
Confidence 3356799999999999999999999999887654433 3444444333 4888875542
Q ss_pred ---eCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec-CCCEEEEEcCC------CcEEEEeccCCCCcEEEEEee
Q 044557 203 ---SADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACD------RSIIVWEKEEDDGNILVVGAL 272 (362)
Q Consensus 203 ---~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~ 272 (362)
..+..|.+||+.++... . +..+...+..++|+| ||+.|+..+.+ ..|.++|...... . .+
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~-~----l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~--~---~l 231 (388)
T 3pe7_A 162 YFTKPCCRLMRVDLKTGEST-V----ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM--R---KV 231 (388)
T ss_dssp GGGCCCEEEEEEETTTCCEE-E----EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC--E---ES
T ss_pred hccCCcceEEEEECCCCceE-E----eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce--E---Ee
Confidence 24478999999876422 2 223556788999999 99998877653 3677777654321 1 22
Q ss_pred cCcc--ceeEEEEEeCC--eEEEeeC--CC---cEEEeeCCCCceeeeeEecCCCCcE---EEEEeeecCCccCCCCCce
Q 044557 273 RGHT--KSILCMAVVSD--LVCSGSA--DK---TIRIWRGIDRNYTCLAVLEGHRGPV---KCLAAAIDNDRCDSSDTSY 340 (362)
Q Consensus 273 ~~h~--~~v~~~~~~~~--~~~s~s~--D~---~i~~W~~~~~~~~~~~~l~~h~~~v---~~~~~~~~~~~~~~~~~~~ 340 (362)
..+. ..+....|+++ .|+..+. ++ .|.+|+........+..+.++.... ...+|+|++..
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~-------- 303 (388)
T 3pe7_A 232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSD-------- 303 (388)
T ss_dssp CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECC--------
T ss_pred eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCc--------
Confidence 2333 34667788765 4443332 22 3999997554444454444421111 11257776543
Q ss_pred EEEe--------cCCCCcEEEEeccc
Q 044557 341 LVCS--------GSLDCDIKVWQISF 358 (362)
Q Consensus 341 ~l~s--------~s~D~~i~~W~~~~ 358 (362)
++++ ++.+..|++||+..
T Consensus 304 l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 304 APVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp C------------CCCCEEEEEETTT
T ss_pred ceeEeeeccccccCCCCEEEEEeccC
Confidence 2222 25567899999863
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-11 Score=116.30 Aligned_cols=195 Identities=12% Similarity=0.019 Sum_probs=120.3
Q ss_pred eEEEEecCCCEEEEEECCCc-------------EEEEECCCce----EEEeeeccCcccEEEEEEcCCCc-EEEEeCCC-
Q 044557 146 SALALTKDETLLYSVSWDRT-------------IKIWRTSDFK----CLESITNAHDDAINAVALSDDGD-VYTGSADK- 206 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~-------------i~iwd~~~~~----~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg- 206 (362)
..++|+||++.|+.++.|.. |++|++.++. .+... ..|...+..+.|+|+|+ ++.++.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~ 249 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDPTTFLQSDLSRDGKYLFVYILRGW 249 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCTTCEEEEEECTTSCCEEEEEEETT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCCCEEEEEEEECCCCCEEEEEEeCCC
Confidence 46789999999999998876 9999998765 22211 23445788999999997 66555444
Q ss_pred ---eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc---CCCcEEEEeccCCCC-cEEEEEeecCc-cce
Q 044557 207 ---KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA---CDRSIIVWEKEEDDG-NILVVGALRGH-TKS 278 (362)
Q Consensus 207 ---~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~---~d~~i~~wd~~~~~~-~~~~~~~~~~h-~~~ 278 (362)
.|.+|+..++. ... +..+...+....+ ++|..++... .++.|.+||+.+... ....+ +..+ ...
T Consensus 250 ~~~~l~~~~~~~~~-~~~----l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l--~~~~~~~~ 321 (695)
T 2bkl_A 250 SENDVYWKRPGEKD-FRL----LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI--VPEDSSAS 321 (695)
T ss_dssp TEEEEEEECTTCSS-CEE----EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE--ECCCSSCE
T ss_pred CceEEEEEcCCCCc-eEE----eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE--ecCCCCCe
Confidence 56666543332 112 2234445555555 5666444444 257899999876432 11121 2222 345
Q ss_pred eEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCC-CCcEEEEEeeecCCccCCCCCceEEE---ecCCCCcEEE
Q 044557 279 ILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGH-RGPVKCLAAAIDNDRCDSSDTSYLVC---SGSLDCDIKV 353 (362)
Q Consensus 279 v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~---s~s~D~~i~~ 353 (362)
+..+++.++ ++++...|+..+||.... .......+..+ ...|..++++++++ .+++ +...+++|++
T Consensus 322 l~~~~~~~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 322 LLSVSIVGGHLSLEYLKDATSEVRVATL-KGKPVRTVQLPGVGAASNLMGLEDLD--------DAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEET-TCCEEEECCCSSSSEECCCBSCTTCS--------EEEEEEEETTEEEEEEE
T ss_pred EEEEEEECCEEEEEEEECCEEEEEEEeC-CCCeeEEecCCCCeEEEEeecCCCCC--------EEEEEEcCCCCCCEEEE
Confidence 677777755 788899999999996432 12334555544 55666666654332 2332 4455678999
Q ss_pred Eeccc
Q 044557 354 WQISF 358 (362)
Q Consensus 354 W~~~~ 358 (362)
||+..
T Consensus 393 ~d~~~ 397 (695)
T 2bkl_A 393 TSVST 397 (695)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99854
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.9e-11 Score=116.82 Aligned_cols=199 Identities=12% Similarity=0.057 Sum_probs=127.2
Q ss_pred ceeEEEEecCCCEEEEEECCC-----cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCe----------
Q 044557 144 AVSALALTKDETLLYSVSWDR-----TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKK---------- 207 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~---------- 207 (362)
.+..++|+|||++||.++.++ .|++||+.+++...... .+ ..+..++|+|||+ |+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 567899999999988776544 89999999998765332 12 2356789999997 776666655
Q ss_pred ------EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-----CCcEEEEeccC------CCCcEEEEE
Q 044557 208 ------IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-----DRSIIVWEKEE------DDGNILVVG 270 (362)
Q Consensus 208 ------i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-----d~~i~~wd~~~------~~~~~~~~~ 270 (362)
|.+|++.++.....++.....|...+..+.|+|||++|+.++. +..|++||+.. +......
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-- 281 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK-- 281 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE--
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE--
Confidence 9999997754322233222334556788999999999987765 66899999875 3212222
Q ss_pred eecCccceeEE-EEEeCCeEEEeeC-C---CcEEEeeCCCCceeeeeEecCCCC--cEEEEEeeecCCccCCCCCceEEE
Q 044557 271 ALRGHTKSILC-MAVVSDLVCSGSA-D---KTIRIWRGIDRNYTCLAVLEGHRG--PVKCLAAAIDNDRCDSSDTSYLVC 343 (362)
Q Consensus 271 ~~~~h~~~v~~-~~~~~~~~~s~s~-D---~~i~~W~~~~~~~~~~~~l~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~ 343 (362)
+..+...+.. +...++.++..+. + ..|.+|+...........+..|.. .+..+++++ .+++++
T Consensus 282 -l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~lv~ 351 (710)
T 2xdw_A 282 -LIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR---------SNFLVL 351 (710)
T ss_dssp -EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET---------TTEEEE
T ss_pred -eeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc---------CCEEEE
Confidence 2334433332 3344564443333 2 358888864322112345556655 677777753 236788
Q ss_pred ecCCCCcEEEEec
Q 044557 344 SGSLDCDIKVWQI 356 (362)
Q Consensus 344 s~s~D~~i~~W~~ 356 (362)
++..|+..+||-+
T Consensus 352 ~~~~~g~~~l~~~ 364 (710)
T 2xdw_A 352 CYLHDVKNTLQLH 364 (710)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEECCEEEEEEE
Confidence 9988987555433
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=5.7e-10 Score=100.09 Aligned_cols=270 Identities=13% Similarity=0.117 Sum_probs=160.1
Q ss_pred cceeeecccCccceeeeEe--cCcEEEEec----------CCCeEEEeecCCCCcccceeee-ccceeEEeecceeEEEE
Q 044557 9 HHCLTTLKGHNSYVSSLAL--AGKFLYTGS----------SDNEVRSWDCNTFSSELDQEFL-SNNNIVAVGKGAVKSLV 75 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~--~~~~l~t~s----------~Dg~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~ 75 (362)
.+.+.++..+..+ .+.+ +++++++++ .+++|.+||..+... ..... ..... .+......+.
T Consensus 41 ~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~--~~~i~~~~~~~--~~g~~p~~i~ 114 (361)
T 2oiz_A 41 GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF--EKEISLPPKRV--QGLNYDGLFR 114 (361)
T ss_dssp CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE--EEEEEECTTBC--CBCCCGGGEE
T ss_pred CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE--EEEEEcCcccc--ccCCCcceEE
Confidence 4556677766666 6777 477887775 367899999865331 11111 00000 0011233455
Q ss_pred EcC--ceeEEEec--CCcEEEEecCCCCCCcccceeeee-ccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE
Q 044557 76 VLA--DKLFSAHQ--DHKIRVWKINNQEPDHQKYTRLAT-LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL 150 (362)
Q Consensus 76 ~~~--~~l~s~~~--dg~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 150 (362)
+++ .+|+++.. +++|.+||++..+. +.. ++. .....+.+
T Consensus 115 ~spdg~~l~v~n~~~~~~v~v~d~~~~~~-------~~~~i~~-----------------------------~~~~~v~~ 158 (361)
T 2oiz_A 115 QTTDGKFIVLQNASPATSIGIVDVAKGDY-------VEDVTAA-----------------------------AGCWSVIP 158 (361)
T ss_dssp ECTTSSEEEEEEESSSEEEEEEETTTTEE-------EEEEGGG-----------------------------TTEEEEEE
T ss_pred ECCCCCEEEEECCCCCCeEEEEECCCCcE-------EEEEecC-----------------------------CCcceeEE
Confidence 554 45888764 58999999875421 111 110 00111345
Q ss_pred ecCC-CEEEEEECCCcEEEEECCC-ceEEEee-----eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee
Q 044557 151 TKDE-TLLYSVSWDRTIKIWRTSD-FKCLESI-----TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 151 ~~~~-~~l~s~s~d~~i~iwd~~~-~~~~~~~-----~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.|++ ..+++.+.||.+.+|+... ++..... ...+..++ .+.+++++. ++..+.++.|.++|+...... .
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~--~ 235 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVK--V 235 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCE--E
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCce--e
Confidence 5654 5777888899999888754 4433111 11122221 223345553 666678899999998654321 1
Q ss_pred ehh--------hhc--cccceeEEEEecCCCEEEEEcC-----------CCcEEEEeccCCCCcEEEEEeecCccceeEE
Q 044557 223 VDV--------LER--HNSGINALALSCDGSVLYSGAC-----------DRSIIVWEKEEDDGNILVVGALRGHTKSILC 281 (362)
Q Consensus 223 ~~~--------~~~--h~~~v~~i~~s~~~~~l~s~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~ 281 (362)
... ... .......++|+||++.++++.. .++|.+||+.+.+ .+..+..+. +..
T Consensus 236 ~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~----~v~~i~~~~--p~~ 309 (361)
T 2oiz_A 236 DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ----RVARIPGRD--ALS 309 (361)
T ss_dssp EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE----EEEEEECTT--CCE
T ss_pred cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc----EEEEEecCC--eeE
Confidence 110 000 1122234789999998887643 3579999987642 455666666 888
Q ss_pred EEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 282 MAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 282 ~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
++++++ ++++++. ++|.+||......+.++++.++......++++|++
T Consensus 310 ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 310 MTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 999765 7777776 99999996432227788887788888889998765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-08 Score=85.35 Aligned_cols=278 Identities=11% Similarity=0.065 Sum_probs=170.3
Q ss_pred cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEec-CCcE
Q 044557 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQ-DHKI 90 (362)
Q Consensus 15 l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~-dg~i 90 (362)
+..+...+.++.++ |+..++...++.|.+||.. .. .. .+... .....+..+.+.++ .++.+.. ++.|
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~--~~-~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~i 80 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK--IT-EYPLP-----TPDAKVMCLTISSDGEVWFTENAANKI 80 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC--EE-EEECS-----STTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC--eE-EecCC-----cccCceeeEEECCCCCEEEeCCCCCeE
Confidence 45566788999985 6666666668999999865 21 11 11100 01234556666543 4555544 6788
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
..|+.+. . .... ..+ .....+..+++.++++++++...++.|.+||
T Consensus 81 ~~~~~~g-~-----~~~~-~~~---------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 126 (299)
T 2z2n_A 81 GRITKKG-I-----IKEY-TLP---------------------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRIT 126 (299)
T ss_dssp EEECTTS-C-----EEEE-ECS---------------------------STTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEECCCC-c-----EEEE-eCC---------------------------CcCCCceeeEECCCCCEEEEecCCceEEEEC
Confidence 8887641 1 0000 010 0123467889999999888877789999999
Q ss_pred CCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc
Q 044557 171 TSDFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 171 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
. +++............+..+++.++|.++.+. .++.|..||. ++... .. ........+..++++++|...++..
T Consensus 127 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~--~~~~~~~~~~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 127 D-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT-EF--KIPTPASGPVGITKGNDDALWFVEI 201 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE--ECSSTTCCEEEEEECTTSSEEEEET
T ss_pred C-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE-Ee--eCCCCCCcceeEEECCCCCEEEEcc
Confidence 8 4443332222234568899999999866554 5689999988 44321 11 1122344578899999999877777
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
.++.|..|+. ++. ... .....+...+.++.++++ +.++...++.|..|+. ..... ...+..+...+.++++
T Consensus 202 ~~~~i~~~~~-~g~--~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~- 274 (299)
T 2z2n_A 202 IGNKIGRITT-SGE--ITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPIQIKSAEPHGICF- 274 (299)
T ss_dssp TTTEEEEECT-TCC--EEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEECSSSSCCEEEEEE-
T ss_pred CCceEEEECC-CCc--EEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeCCCCCCccceEEe-
Confidence 7889999998 432 222 223344566788888653 5666667889999985 22221 1123455677888887
Q ss_pred ecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+++ .+.++.+ .+.|..++..
T Consensus 275 ~~g---------~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 275 DGE---------TIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp CSS---------CEEEEET-TTEEEEEEEC
T ss_pred cCC---------CEEEEec-CCcEEEEEcC
Confidence 543 3444544 4555555554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-11 Score=118.64 Aligned_cols=200 Identities=8% Similarity=0.000 Sum_probs=127.3
Q ss_pred ecCceeEEEEecCCCEEE-----EEECCCcEEEEECCCceEE-EeeeccCcccEEEEEEcCCCc-EEEEeCCCe------
Q 044557 141 HVDAVSALALTKDETLLY-----SVSWDRTIKIWRTSDFKCL-ESITNAHDDAINAVALSDDGD-VYTGSADKK------ 207 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~-----s~s~d~~i~iwd~~~~~~~-~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~------ 207 (362)
|...+..++|+|||++|| .|+.+..|++||+.+++.+ .... .. .....++|+|+|+ |+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EG-GKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SC-CTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-Cc-ccccceEEecCCCEEEEEEecCCCCCccc
Confidence 344578899999999988 4555678999999998764 2111 11 1125789999997 777777665
Q ss_pred -------EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC----cEEEEeccCCCCcEEEEEeecCcc
Q 044557 208 -------IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR----SIIVWEKEEDDGNILVVGALRGHT 276 (362)
Q Consensus 208 -------i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~~h~ 276 (362)
|++|++.++.....++.....|...+..+.|+|||++|+.++.++ .|.+|+.... ....+ ..+.
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l---~~~~ 271 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK--DFRLL---VKGV 271 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS--SCEEE---EECS
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC--ceEEe---ecCC
Confidence 999999876532234333344556788999999999998887666 6667755432 22222 2233
Q ss_pred ceeEEEEEe-CCeEEEee---CCCcEEEeeCCCCceeeeeEecCC--CCcEEEEEeeecCCccCCCCCceEEEecCCCCc
Q 044557 277 KSILCMAVV-SDLVCSGS---ADKTIRIWRGIDRNYTCLAVLEGH--RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD 350 (362)
Q Consensus 277 ~~v~~~~~~-~~~~~s~s---~D~~i~~W~~~~~~~~~~~~l~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~ 350 (362)
..+....+. +++++++. .++.|.+|+...........+..| ...+..++++ +++++++.+.|+.
T Consensus 272 ~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~----------~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 272 GAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV----------GGHLSLEYLKDAT 341 (695)
T ss_dssp SCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE----------TTEEEEEEEETTE
T ss_pred CceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE----------CCEEEEEEEECCE
Confidence 333333333 33444444 357899998643221112334333 4457777775 1368899999999
Q ss_pred EEEEecc
Q 044557 351 IKVWQIS 357 (362)
Q Consensus 351 i~~W~~~ 357 (362)
.+||.+.
T Consensus 342 ~~l~~~~ 348 (695)
T 2bkl_A 342 SEVRVAT 348 (695)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999765
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.6e-10 Score=107.64 Aligned_cols=199 Identities=15% Similarity=0.054 Sum_probs=126.6
Q ss_pred eeEEEEecCCCEEEEEECCCc----------------EEEEECCCceEE--Eeee-ccCcccEEEEEEcCCCc-EEEEeC
Q 044557 145 VSALALTKDETLLYSVSWDRT----------------IKIWRTSDFKCL--ESIT-NAHDDAINAVALSDDGD-VYTGSA 204 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~----------------i~iwd~~~~~~~--~~~~-~~h~~~v~~v~~~~~~~-~~s~~~ 204 (362)
+..++|+||++.|+.++.++. |++|++.+++.. .... ..|...+..+.|+|+|+ ++.++.
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 567899999999999888766 999999876521 1111 12455678899999997 544432
Q ss_pred -----CCeEEEEeCCC------CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC----cEEEEeccCCCC-cEEE
Q 044557 205 -----DKKIKVWRRSP------GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR----SIIVWEKEEDDG-NILV 268 (362)
Q Consensus 205 -----dg~i~iw~~~~------~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~----~i~~wd~~~~~~-~~~~ 268 (362)
+..|.+||+.+ +..... .+..+...+.. .|+|+|..|+..+.++ .|.+||+..... ....
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWV---KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCE---EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred ccCCCccEEEEEECcccccccCCccceE---EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence 67899999875 321111 12234444443 5889999887666533 589999876431 1122
Q ss_pred EEeecCccc--eeEEEEEe-CC-eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEe
Q 044557 269 VGALRGHTK--SILCMAVV-SD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCS 344 (362)
Q Consensus 269 ~~~~~~h~~--~v~~~~~~-~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 344 (362)
+..|.. .+..+.+. .+ ++++...|+..+||......+..+..+..+...|..++++|+++ .++++
T Consensus 329 ---l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~--------~l~~~ 397 (710)
T 2xdw_A 329 ---LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT--------EIFYQ 397 (710)
T ss_dssp ---EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS--------EEEEE
T ss_pred ---ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC--------EEEEE
Confidence 223333 56777877 44 67888889876665432223345667777777888888766432 23333
Q ss_pred ---cCCCCcEEEEeccc
Q 044557 345 ---GSLDCDIKVWQISF 358 (362)
Q Consensus 345 ---~s~D~~i~~W~~~~ 358 (362)
....++|.+||+..
T Consensus 398 ~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 398 FTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EECSSCCCEEEEEETTS
T ss_pred EeCCCCCCEEEEEECCC
Confidence 34567899999853
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-09 Score=93.53 Aligned_cols=195 Identities=9% Similarity=0.024 Sum_probs=130.1
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEE-EeCCCeEEEEeCCCCCCccee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYT-GSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s-~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.+.+++++++++++++.. ++.|.+||....... .+.......+..+++.++|.++. ...++.|.+|+..+... ..
T Consensus 68 ~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~~ 143 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TV 143 (270)
T ss_dssp SCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--EE
T ss_pred CcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--Ee
Confidence 456789999999666655 889999998765432 22222335688999999998654 45678999997543321 11
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEE
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRI 300 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~ 300 (362)
. .......+..++++|+|+.+++...++.|..|+..... . ......+...+..++++++ ++++...++.|.+
T Consensus 144 ~--~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~--~--~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 144 L--PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN--Q--VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK 217 (270)
T ss_dssp C--CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC--E--EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred e--ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc--e--EeecccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence 1 11223357789999999977777778899999976432 1 1112223355778888754 6677777889999
Q ss_pred eeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
|+...... ......+-..+.++++.+++ .++++.+.+++|+++++..+
T Consensus 218 ~~~~~~~~--~~~~~~~~~~p~~i~~~~~g---------~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 218 LLAGSTTS--TVLPFTGLNTPLAVAVDSDR---------TVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp ECTTCSCC--EECCCCSCSCEEEEEECTTC---------CEEEEEGGGTEEEEECCCGG
T ss_pred EcCCCCcc--eeeccCCCCCceeEEECCCC---------CEEEEECCCCEEEEEcCCCc
Confidence 98543221 11222344678888886543 46778888999999998654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-09 Score=96.99 Aligned_cols=182 Identities=8% Similarity=0.064 Sum_probs=116.4
Q ss_pred ceeEEEEecCCCEEEEEECC---C--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeC-------------
Q 044557 144 AVSALALTKDETLLYSVSWD---R--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSA------------- 204 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d---~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~------------- 204 (362)
.+..++|+|||+.|+.++.+ + .|.+|++.+++...... .+ . +..++|+|+|+ ++.++.
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 45678999999998887754 2 47888888877654332 22 3 88999999997 655542
Q ss_pred --------------CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC-------cEEEEeccCCC
Q 044557 205 --------------DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR-------SIIVWEKEEDD 263 (362)
Q Consensus 205 --------------dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-------~i~~wd~~~~~ 263 (362)
...|.+||+.++.....+ .. . .+..++|+||| .+++++.+. ...+|.+..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l----~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-- 207 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF----EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED-- 207 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEE----EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeee----cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC--
Confidence 256888998765421222 12 2 68899999999 888776552 445555542
Q ss_pred CcEEEEEeecCccceeEEEEEeCCeEEEeeCC--------CcEEEeeCCCCceeeeeEecCCCCcEEE-EEeeecCCccC
Q 044557 264 GNILVVGALRGHTKSILCMAVVSDLVCSGSAD--------KTIRIWRGIDRNYTCLAVLEGHRGPVKC-LAAAIDNDRCD 334 (362)
Q Consensus 264 ~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D--------~~i~~W~~~~~~~~~~~~l~~h~~~v~~-~~~~~~~~~~~ 334 (362)
+....+ ..+ ..+..+...+..++.++.+ ..|.+|+ . ........+|...+.. +.|+
T Consensus 208 ~~~~~l---~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~--~~~~~l~~~~~~~~~~~~~~s------- 272 (347)
T 2gop_A 208 GKEEKM---FEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--G--KEVMGILDEVDRGVGQAKIKD------- 272 (347)
T ss_dssp TEEEEE---EEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--S--SCEEESSTTCCSEEEEEEEET-------
T ss_pred CceEEe---ccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--C--CceEeccccCCcccCCccEEc-------
Confidence 222222 223 4445554455567666644 3577776 2 2233334566777775 6663
Q ss_pred CCCCceEEEecCCCCcEEEEecc
Q 044557 335 SSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 335 ~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++ ++++++.|+.++|| +.
T Consensus 273 ---dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 273 ---GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp ---TE-EEEEEEETTEEEEE-EE
T ss_pred ---Cc-EEEEEecCCcEEEE-Ec
Confidence 23 68889999999999 75
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-09 Score=95.28 Aligned_cols=199 Identities=11% Similarity=0.093 Sum_probs=128.5
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CC----CeEEEEeCCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-AD----KKIKVWRRSP 215 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~d----g~i~iw~~~~ 215 (362)
+...+.+++|+|++++++++..++.|.+||..+++...... .+...+.+++++|+|.++.++ .+ +.|.+||..+
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence 34556889999999988888889999999998876544332 355679999999999866554 44 5899999876
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcC------CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC------DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-- 287 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-- 287 (362)
+.... .... ..+...+..++++|+|..+++... .+.|..++.... ....+ ..+...+..++++++
T Consensus 122 ~~~~~-~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~--~~~~~---~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 122 DNLQD-IIED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR--TVTPI---IQNISVANGIALSTDEK 194 (333)
T ss_dssp CSCEE-EECS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC--CEEEE---EEEESSEEEEEECTTSS
T ss_pred CEEEE-EEcc-CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC--EEEEe---ecCCCcccceEECCCCC
Confidence 54321 1111 123456889999999988877654 245555554432 22221 122334667888764
Q ss_pred -eEEEeeCCCcEEEeeCCCC--ceee-----eeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 288 -LVCSGSADKTIRIWRGIDR--NYTC-----LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 288 -~~~s~s~D~~i~~W~~~~~--~~~~-----~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++++.+.++.|.+|+.... .... ...+.++ ..+..+++.+++ .++++...++.|.+||..
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G---------~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD---------NLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC---------CEEEEEETTTEEEEECTT
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC---------CEEEEEcCCCEEEEECCC
Confidence 4456667889999986321 1111 1122333 456777776543 456666667899999874
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.6e-10 Score=96.60 Aligned_cols=196 Identities=14% Similarity=0.149 Sum_probs=128.0
Q ss_pred ecCceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCC
Q 044557 141 HVDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNK 218 (362)
Q Consensus 141 h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~ 218 (362)
+.....+++|+|+++ +++++..++.|..|+..++ ...+. .+...+.+++++|+|.++.+. .++.|.+||..++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~-~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM-HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE-SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE-CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 345567899999998 7888888999999999877 44443 456678999999999866655 468999999876653
Q ss_pred cceeehhhh-ccccceeEEEEecCCCEEEEE----cC-------------CCcEEEEeccCCCCcEEEEEeecCccceeE
Q 044557 219 KHSLVDVLE-RHNSGINALALSCDGSVLYSG----AC-------------DRSIIVWEKEEDDGNILVVGALRGHTKSIL 280 (362)
Q Consensus 219 ~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~----~~-------------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~ 280 (362)
. .+..... .....+..++++|+|+.+++. .. .+.|..++.. ..... +..+.....
T Consensus 103 ~-~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~~---~~~~~~~~~ 175 (296)
T 3e5z_A 103 E-SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---GTLSA---PIRDRVKPN 175 (296)
T ss_dssp E-EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---SCEEE---EECCCSSEE
T ss_pred E-EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC---CCEEE---eecCCCCCc
Confidence 2 1211111 112356789999999988873 31 2345555443 22222 234455567
Q ss_pred EEEEeCC--eEEEeeCCCcEEEeeCC-CCce-eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 281 CMAVVSD--LVCSGSADKTIRIWRGI-DRNY-TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 281 ~~~~~~~--~~~s~s~D~~i~~W~~~-~~~~-~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.++++++ .+++.+.++.|.+|+.. .... .....+..+...+.++++.+++ .++++. ++.|.+|+.
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G---------~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG---------LIWASA--GDGVHVLTP 244 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS---------CEEEEE--TTEEEEECT
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC---------CEEEEc--CCeEEEECC
Confidence 8888754 56888888999999864 2222 1122333345556677776543 344444 788999987
Q ss_pred c
Q 044557 357 S 357 (362)
Q Consensus 357 ~ 357 (362)
.
T Consensus 245 ~ 245 (296)
T 3e5z_A 245 D 245 (296)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-09 Score=93.40 Aligned_cols=205 Identities=12% Similarity=0.061 Sum_probs=131.1
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec-CceeEEEEecCCCEEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV-DAVSALALTKDETLLY 158 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~ 158 (362)
.|++++.|+.|.+||.++++.. ... ..+. ..+.++.+.|+|++|+
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~-------w~~---------------------------~~~~~~~~~~~~~~pdG~ilv 52 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIV-------WEY---------------------------PLEKGWECNSVAATKAGEILF 52 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEE-------EEE---------------------------ECCTTCCCCEEEECTTSCEEE
T ss_pred EEEeeCCCCEEEEEECCCCeEE-------EEe---------------------------CCCccCCCcCeEECCCCCEEE
Confidence 4778889999999998655411 000 0111 2467888999999988
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeC-CCeEEEEeCCCCCCcceee--hhhhcccccee
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSA-DKKIKVWRRSPGNKKHSLV--DVLERHNSGIN 234 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~-dg~i~iw~~~~~~~~~~~~--~~~~~h~~~v~ 234 (362)
+.++.|..||. +++.+..+.......+.++.+.++|. +++.+. ++.|..++. +++...+.. .....+.....
T Consensus 53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~ 128 (276)
T 3no2_A 53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFR 128 (276)
T ss_dssp --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCS
T ss_pred --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccccccc
Confidence 45889999999 78877777643345788899999998 455555 677777775 343222221 01112223455
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeee
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
.+++.++|.+|++...++.|.+||.. ++. +..+... ..+.+.... ++.+++++.++.|..++.. +++.+.
T Consensus 129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~----~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~--tG~~~w 200 (276)
T 3no2_A 129 QINKNKKGNYLVPLFATSEVREIAPN-GQL----LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLE--SNRIVR 200 (276)
T ss_dssp CCEECTTSCEEEEETTTTEEEEECTT-SCE----EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTT--TCCEEE
T ss_pred CceECCCCCEEEEecCCCEEEEECCC-CCE----EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCc--CCcEEE
Confidence 67788999999999999999999986 432 2223322 233444444 4578888888889999843 245555
Q ss_pred EecCCC------CcEEEEEeeecC
Q 044557 313 VLEGHR------GPVKCLAAAIDN 330 (362)
Q Consensus 313 ~l~~h~------~~v~~~~~~~~~ 330 (362)
++..+. ..+..++..+++
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~G 224 (276)
T 3no2_A 201 RVNANDIEGVQLFFVAQLFPLQNG 224 (276)
T ss_dssp EEEGGGSBSCCCSEEEEEEECTTS
T ss_pred EecCCCCCCccccccccceEcCCC
Confidence 554322 225666665544
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-09 Score=90.63 Aligned_cols=249 Identities=10% Similarity=0.101 Sum_probs=150.5
Q ss_pred cceeccceeeecccCc-c-ceeeeEec--CcEEE-EecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC
Q 044557 4 LSVVDHHCLTTLKGHN-S-YVSSLALA--GKFLY-TGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA 78 (362)
Q Consensus 4 ~~~~~~~~~~tl~gH~-~-~V~~l~~~--~~~l~-t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 78 (362)
++..+.+....+.+-. . ...++.++ +++++ +.+.++.|.+||..+.... ... ..+......+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---~~~------~~~~~~p~~i~~~~ 76 (270)
T 1rwi_B 6 PTQASGQTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---VLP------FNGLYQPQGLAVDG 76 (270)
T ss_dssp ------CEECCCCSCSSCCCEEEEEECTTCCEEEEECSSSCEEEEECC-----E---ECC------CCSCCSCCCEEECT
T ss_pred CCCCCCcccCccccccccCCccceEECCCCCEEEEccCCCCcEEEecCCCcccc---eEe------eCCcCCcceeEECC
Confidence 3344444444444432 1 56777774 66666 5578899999986442210 000 00112345566654
Q ss_pred c-eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 79 D-KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 79 ~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
+ .++.+..++.|..|+.+..... ... ......+..++++++++++
T Consensus 77 ~g~l~v~~~~~~i~~~d~~~~~~~--------~~~--------------------------~~~~~~p~~i~~~~~g~l~ 122 (270)
T 1rwi_B 77 AGTVYVTDFNNRVVTLAAGSNNQT--------VLP--------------------------FDGLNYPEGLAVDTQGAVY 122 (270)
T ss_dssp TCCEEEEETTTEEEEECTTCSCCE--------ECC--------------------------CCSCSSEEEEEECTTCCEE
T ss_pred CCCEEEEcCCCEEEEEeCCCceEe--------eee--------------------------cCCcCCCcceEECCCCCEE
Confidence 3 4666666888999986542210 000 0012346789999999988
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEE-eCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTG-SADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
++...++.|.+|+..+....... ......+..+++.++|.++.+ ..++.|.+|+........ ....+...+..+
T Consensus 123 v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~----~~~~~~~~p~~i 197 (270)
T 1rwi_B 123 VADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV----LPFTDITAPWGI 197 (270)
T ss_dssp EEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE----CCCSSCCSEEEE
T ss_pred EEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe----ecccCCCCceEE
Confidence 87777899999986655433221 122335678999999986544 457899999986543211 111222567889
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~ 304 (362)
+++++|..+++...++.|..|+...... .. ....+...+.++++++ .++++.+.++.|++++..
T Consensus 198 ~~d~~g~l~v~~~~~~~v~~~~~~~~~~--~~--~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 198 AVDEAGTVYVTEHNTNQVVKLLAGSTTS--TV--LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EECTTCCEEEEETTTSCEEEECTTCSCC--EE--CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EECCCCCEEEEECCCCcEEEEcCCCCcc--ee--eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 9999998777777889999999864321 11 1222335678888864 478888899999999853
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-08 Score=100.60 Aligned_cols=196 Identities=12% Similarity=0.064 Sum_probs=122.1
Q ss_pred eEEEEecCCCEEEEEECCCc--------------EEEEECCCceE--EEeee-ccCcccEEEEEEcCCCc-EEEEeCC--
Q 044557 146 SALALTKDETLLYSVSWDRT--------------IKIWRTSDFKC--LESIT-NAHDDAINAVALSDDGD-VYTGSAD-- 205 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~--------------i~iwd~~~~~~--~~~~~-~~h~~~v~~v~~~~~~~-~~s~~~d-- 205 (362)
..++|+|| +.|+.++.|+. |++|++.++.. ...+. ..+...+..+.|+|+|+ ++..+.+
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence 46789999 88888877654 88999876542 11121 12333578999999997 5544433
Q ss_pred ---CeEEEEeCCCCC-C-cceeehhhhccccceeEEEEecCCCEEEEEcCCC----cEEEEeccCCCCcEEEEEeecCcc
Q 044557 206 ---KKIKVWRRSPGN-K-KHSLVDVLERHNSGINALALSCDGSVLYSGACDR----SIIVWEKEEDDGNILVVGALRGHT 276 (362)
Q Consensus 206 ---g~i~iw~~~~~~-~-~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~~h~ 276 (362)
..|.+||+.++. . ...+ ..+...+... ++|+|..|+..+.++ .|.+||+......... .+..+.
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l----~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~--l~~~~~ 363 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTAL----IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT--VVPESK 363 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEE----ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE--EECCCS
T ss_pred CCcceEEEEECCCCCCcccEEe----cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEE--EecCCC
Confidence 489999987652 1 1122 2233334433 358999888777643 4999998653211222 234445
Q ss_pred ceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecC-CCCcEEEEEeeecCCccCCCCCceEEE---ecCCCCcE
Q 044557 277 KSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEG-HRGPVKCLAAAIDNDRCDSSDTSYLVC---SGSLDCDI 351 (362)
Q Consensus 277 ~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~---s~s~D~~i 351 (362)
..+..+.+.++ ++++...|+..+||.... .......+.. +...|..++++++++. +++ +....++|
T Consensus 364 ~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~--------l~~~~ss~~~P~~i 434 (741)
T 1yr2_A 364 DNLESVGIAGNRLFASYIHDAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRH--------AYLSFSSFTQPATV 434 (741)
T ss_dssp SEEEEEEEEBTEEEEEEEETTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSC--------EEEEEEETTEEEEE
T ss_pred CeEEEEEEECCEEEEEEEECCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCE--------EEEEEcCCCCCCEE
Confidence 55667777655 778889999999886432 2234455554 4667888888775432 222 44566889
Q ss_pred EEEeccc
Q 044557 352 KVWQISF 358 (362)
Q Consensus 352 ~~W~~~~ 358 (362)
.+||+..
T Consensus 435 ~~~d~~t 441 (741)
T 1yr2_A 435 LALDPAT 441 (741)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9999853
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.6e-10 Score=101.31 Aligned_cols=168 Identities=8% Similarity=0.022 Sum_probs=118.6
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCce---------EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeC
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFK---------CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRR 213 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---------~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~ 213 (362)
.+..+++++...++++|+.| .+++|++.+.+ ........+.. |..++| ++. ++++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 57889999999999999987 55569865433 11111123455 999999 665 5555 8899999998
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEee
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGS 293 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s 293 (362)
.+..... ....|..++.++.+.+. .++++..||.+.+||+.+... .. +...|.|++|+++-++.|.
T Consensus 114 ~sl~~~~----~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~--~~------~~~~Vs~v~WSpkG~~vg~ 179 (388)
T 1xip_A 114 EELSEFR----TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST--KQ------LAQNVTSFDVTNSQLAVLL 179 (388)
T ss_dssp SSTTCEE----EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE--EE------EEESEEEEEECSSEEEEEE
T ss_pred hhhhccC----ccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc--cc------ccCCceEEEEcCCceEEEE
Confidence 7654221 23456677888776654 388999999999999985432 11 4567999999998889999
Q ss_pred CCCcEEEeeCCCCceeeeeEe------c---CCCCcEEEEEeeecC
Q 044557 294 ADKTIRIWRGIDRNYTCLAVL------E---GHRGPVKCLAAAIDN 330 (362)
Q Consensus 294 ~D~~i~~W~~~~~~~~~~~~l------~---~h~~~v~~~~~~~~~ 330 (362)
.||++++|+.........+++ . +|...|.++.|.++.
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 999999997533221113344 3 578889999887653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.21 E-value=9.7e-08 Score=82.97 Aligned_cols=181 Identities=12% Similarity=0.093 Sum_probs=114.8
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc---CcccEEEEEEcCCCcEEEEeC----------CCeEE
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA---HDDAINAVALSDDGDVYTGSA----------DKKIK 209 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~s~~~----------dg~i~ 209 (362)
..+.+++++++++++++ . ++.|.+||.++++........ ....+..+++.|+|+++.++. ...-.
T Consensus 54 ~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 54 APVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp SCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred CceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcE
Confidence 46788999999996554 4 678999999877643222111 123478899999999665442 13345
Q ss_pred EEeCCCCCCcceeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcE---EEEEeecCccceeEEEEEe
Q 044557 210 VWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNI---LVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~---~~~~~~~~h~~~v~~~~~~ 285 (362)
+|.+........+ ..+....+.++|+||++.|+ +.+.++.|..|++....+.. .....+..+......++++
T Consensus 132 l~~~d~~g~~~~~----~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 132 LYSLFPDHHVKKY----FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID 207 (297)
T ss_dssp EEEECTTSCEEEE----EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred EEEEECCCCEEEE----eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence 6655433221111 12233457899999998765 55667889999874222222 2223333344566778886
Q ss_pred CC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee-ecCC
Q 044557 286 SD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA-IDND 331 (362)
Q Consensus 286 ~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~-~~~~ 331 (362)
++ +.++...++.|..|+.. +++.+..+..+...+++++|. |+++
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~--tG~~~~~i~~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPV--TGKRLQTVKLPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTT--TCCEEEEEECSSSBEEEEEEESGGGC
T ss_pred CCCCEEEEEcCCCEEEEEcCC--CceEEEEEECCCCCceEEEEeCCCCC
Confidence 43 66676777889999843 345667777777789999997 5543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.4e-08 Score=92.13 Aligned_cols=278 Identities=13% Similarity=0.146 Sum_probs=164.2
Q ss_pred eeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecC--C
Q 044557 22 VSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKIN--N 97 (362)
Q Consensus 22 V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~--~ 97 (362)
+......+.++++...+++|.++|..+... ..... .+. ....+.++++ ++++++.|+.|.+||+. +
T Consensus 160 ~~~~d~~~~~~V~~~~~~~V~viD~~t~~v--~~~i~-------~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t 229 (567)
T 1qks_A 160 MNDWDLENLFSVTLRDAGQIALIDGSTYEI--KTVLD-------TGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKE 229 (567)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCCE--EEEEE-------CSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred ccccCCCceEEEEeCCCCeEEEEECCCCeE--EEEEe-------CCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence 334343456788888999999999876431 11111 111 2234556554 58999999999999984 2
Q ss_pred CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe----cCCCEEEEEE-CCCcEEEEECC
Q 044557 98 QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT----KDETLLYSVS-WDRTIKIWRTS 172 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~s-~d~~i~iwd~~ 172 (362)
... +..++ .......++|+ |||++++++. .++.|.++|..
T Consensus 230 ~~~-------v~~i~----------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 230 PTT-------VAEIK----------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp CCE-------EEEEE----------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CcE-------eEEEe----------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 210 11111 01224678899 6999888776 45899999999
Q ss_pred CceEEEeeecc---------Ccc-cEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 173 DFKCLESITNA---------HDD-AINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 173 ~~~~~~~~~~~---------h~~-~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
+.+.+..+... |.. .+..+..++++. +++...+|.|.++|..+.... .. ..+ ........+.|+|
T Consensus 275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~-~v-~~i-~~~~~~~d~~~~p 351 (567)
T 1qks_A 275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL-KT-TEI-SAERFLHDGGLDG 351 (567)
T ss_dssp TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE-EE-EEE-ECCSSEEEEEECT
T ss_pred CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc-ee-eee-eccccccCceECC
Confidence 98887765421 112 467788888765 455667899999998764311 11 111 1223355788999
Q ss_pred CCCEEEEEc-CCCcEEEEeccCCCCcEEEEEee---cCccceeEEEEEeCC---eEEEee-CCCcEEEeeCCCCc-----
Q 044557 241 DGSVLYSGA-CDRSIIVWEKEEDDGNILVVGAL---RGHTKSILCMAVVSD---LVCSGS-ADKTIRIWRGIDRN----- 307 (362)
Q Consensus 241 ~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~---~~~s~s-~D~~i~~W~~~~~~----- 307 (362)
+|++++++. .++.|.++|..+.+ ....... .-|.++-..+ +.++ ..+++. .++.|.+++....+
T Consensus 352 dgr~~~va~~~sn~V~ViD~~t~k--l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~ 428 (567)
T 1qks_A 352 SHRYFITAANARNKLVVIDTKEGK--LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA 428 (567)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTE--EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred CCCEEEEEeCCCCeEEEEECCCCc--EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcccc
Confidence 999987665 67899999998643 2211112 1243322222 3433 445543 56899999854311
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEec--CC----CCcEEEEeccc
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG--SL----DCDIKVWQISF 358 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~--s~----D~~i~~W~~~~ 358 (362)
++.++++......-..+.++|++. ++.++. .- ..+|.++|+..
T Consensus 429 ~kvv~~i~~~g~g~~~i~~~p~~~--------~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 429 WKILDSFPALGGGSLFIKTHPNSQ--------YLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp TSEEEEEECSCSCCCCEECCTTCS--------EEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred CEEEEEEecCCCCCEEEEeCCCCC--------eEEEecCCCCCcccCceEEEEECCc
Confidence 455666664433222244555432 233333 11 35888888863
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-09 Score=93.12 Aligned_cols=183 Identities=14% Similarity=0.052 Sum_probs=122.7
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcc-cc
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERH-NS 231 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h-~~ 231 (362)
.+++|++++.|+.|.+||.++++.+..+.......+.++++.|+|+++. +.++.|..||. +++...++ ..+ ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~----~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNI----AAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEE----ECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEE----cCCCCc
Confidence 4678999999999999999999988777532214678899999999666 56888999998 56533322 222 34
Q ss_pred ceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeec----CccceeEEEEE--eCCeEEEeeCCCcEEEeeCC
Q 044557 232 GINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALR----GHTKSILCMAV--VSDLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~----~h~~~v~~~~~--~~~~~~s~s~D~~i~~W~~~ 304 (362)
.+.++.+.|+|+++++.+. ++.|..+|.. ++......+. ++......+++ .++++++.+.++.|..|+..
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~---Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNMK---GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECTT---SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeCC---CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 6788899999999999887 7777777652 2221111111 22222333344 35689999999999999853
Q ss_pred CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 305 DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 305 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++.+.++... ..+.++.+.++ +.+|++++.++.|..+|..
T Consensus 155 ---G~~~w~~~~~-~~~~~~~~~~~---------g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 155 ---GQLLNSVKLS-GTPFSSAFLDN---------GDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp ---SCEEEEEECS-SCCCEEEECTT---------SCEEEECBTTSEEEEECTT
T ss_pred ---CCEEEEEECC-CCccceeEcCC---------CCEEEEeCCCCeEEEEeCc
Confidence 4556666543 33445555433 3467777777777777654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-08 Score=84.96 Aligned_cols=198 Identities=10% Similarity=0.060 Sum_probs=125.3
Q ss_pred CceeEEEEecC-CCEEEEEECCCcEEEEECCCceEEEe-eec---cCcccEEEEEEcCCCcEEEEeC-C-----------
Q 044557 143 DAVSALALTKD-ETLLYSVSWDRTIKIWRTSDFKCLES-ITN---AHDDAINAVALSDDGDVYTGSA-D----------- 205 (362)
Q Consensus 143 ~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~---~h~~~v~~v~~~~~~~~~s~~~-d----------- 205 (362)
..+.+++++++ ++++++. .++.|.+||.. ++.... ... .....+.++++.++|.++.++. +
T Consensus 71 ~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp CCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 45788999999 6655544 45589999988 654332 111 1123478999999998665543 3
Q ss_pred ----CeEEEEeCCCCCCcceeehhhhccccceeEEEEe----cCCCEEEEE-cCCCcEEEEeccCCCCcE---EEEEeec
Q 044557 206 ----KKIKVWRRSPGNKKHSLVDVLERHNSGINALALS----CDGSVLYSG-ACDRSIIVWEKEEDDGNI---LVVGALR 273 (362)
Q Consensus 206 ----g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s----~~~~~l~s~-~~d~~i~~wd~~~~~~~~---~~~~~~~ 273 (362)
+.|..|+.. +. .... ..+......++++ |+++.|+.+ ..++.|.+|+.... ... .....+.
T Consensus 149 ~~~~~~l~~~~~~-g~-~~~~----~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~ 221 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQ-MIQV----DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP-AKIENKKVWGHIP 221 (314)
T ss_dssp SSSCEEEEEECTT-SC-EEEE----EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET-TEEEEEEEEEECC
T ss_pred cCCCCeEEEECCC-CC-EEEe----ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC-CccccceEEEECC
Confidence 456666654 32 1111 1223345788999 999766555 56789999997621 111 1223344
Q ss_pred Ccc-ceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc
Q 044557 274 GHT-KSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD 350 (362)
Q Consensus 274 ~h~-~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~ 350 (362)
++. ..+..+++++ .+.++...++.|.+|+.. +...+..+..+...+.+++|++++. .+.++...++.
T Consensus 222 ~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~i~~~~dg~--------~l~v~~~~~~~ 291 (314)
T 1pjx_A 222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD--GGQPKMRIRCPFEKPSNLHFKPQTK--------TIFVTEHENNA 291 (314)
T ss_dssp CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT--CBSCSEEEECSSSCEEEEEECTTSS--------EEEEEETTTTE
T ss_pred CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC--CCcEeEEEeCCCCCceeEEECCCCC--------EEEEEeCCCCe
Confidence 443 5567788864 367777788899999853 1333455566667899999865432 35666677789
Q ss_pred EEEEecccC
Q 044557 351 IKVWQISFP 359 (362)
Q Consensus 351 i~~W~~~~~ 359 (362)
|..|++..+
T Consensus 292 l~~~~~~~~ 300 (314)
T 1pjx_A 292 VWKFEWQRN 300 (314)
T ss_dssp EEEEECSSC
T ss_pred EEEEeCCCC
Confidence 999998643
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-09 Score=105.76 Aligned_cols=199 Identities=17% Similarity=0.066 Sum_probs=123.5
Q ss_pred CceeEEEEecCCCEEEEEECC-----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC----------
Q 044557 143 DAVSALALTKDETLLYSVSWD-----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADK---------- 206 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg---------- 206 (362)
..+..++|+|||++||.++.+ ..|++||+.+++.+.... +...+..++|+|+ + ++.++.|+
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 356789999999998877654 369999999988755321 2222356889999 6 66665544
Q ss_pred ----eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC-----cEEEEeccCCCCc-EEEEEeecCcc
Q 044557 207 ----KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR-----SIIVWEKEEDDGN-ILVVGALRGHT 276 (362)
Q Consensus 207 ----~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-----~i~~wd~~~~~~~-~~~~~~~~~h~ 276 (362)
.|.+|++.++.....++.....+...+..+.|+|||++|+..+.++ .|++||+.++... ...+ ..+.
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l---~~~~ 316 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL---IPDL 316 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE---ECSS
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe---cCCC
Confidence 3889998765432233332233444578899999999998877554 7999998764212 2222 2233
Q ss_pred ceeE-EEEEeCCeEEEeeC----CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcE
Q 044557 277 KSIL-CMAVVSDLVCSGSA----DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351 (362)
Q Consensus 277 ~~v~-~~~~~~~~~~s~s~----D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i 351 (362)
..+. .+...++.++..+. ++.|.+|+...........+..+...+..+++. +++++++...|+..
T Consensus 317 ~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~----------~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 317 KAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA----------GNRLFASYIHDAKS 386 (741)
T ss_dssp SSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE----------BTEEEEEEEETTEE
T ss_pred CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE----------CCEEEEEEEECCEE
Confidence 2222 23345665555554 344888885432112222334445556566654 23678899999998
Q ss_pred EEEecc
Q 044557 352 KVWQIS 357 (362)
Q Consensus 352 ~~W~~~ 357 (362)
+||.+.
T Consensus 387 ~l~~~~ 392 (741)
T 1yr2_A 387 QVLAFD 392 (741)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888664
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-07 Score=79.61 Aligned_cols=193 Identities=13% Similarity=0.071 Sum_probs=127.8
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec-cCcccEEEEEEcCCCcEEEE-eCCCeEEEEeCCCCCCcc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN-AHDDAINAVALSDDGDVYTG-SADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~s~-~~dg~i~iw~~~~~~~~~ 220 (362)
..+.+++++++++++++...++.|..|+.. ++. ..+.. .....+..+++.++|.++.+ ..++.|.+||. ++...
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~- 132 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR- 132 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-
Confidence 456789999999988887778899999976 332 22221 23456889999999986554 46789999987 44321
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i 298 (362)
.. ........+..+++.++|..+++...++.|..||. ++. .... ....+...+..+++.++ +.++...++.|
T Consensus 133 ~~--~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 206 (299)
T 2z2n_A 133 EY--ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD--ITEF-KIPTPASGPVGITKGNDDALWFVEIIGNKI 206 (299)
T ss_dssp EE--ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC--EEEE-ECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred Ee--cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc--EEEe-eCCCCCCcceeEEECCCCCEEEEccCCceE
Confidence 11 11223456789999999988887777889999997 322 2221 23334455778888653 66666668889
Q ss_pred EEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 299 RIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.+|+. ...... ..+..+...+.++++.+++ .+.++...++.|..||.
T Consensus 207 ~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g---------~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 207 GRITT-SGEITE-FKIPTPNARPHAITAGAGI---------DLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEECT-TCCEEE-EECSSTTCCEEEEEECSTT---------CEEEEETTTTEEEEEET
T ss_pred EEECC-CCcEEE-EECCCCCCCceeEEECCCC---------CEEEeccCCceEEEECC
Confidence 99986 333222 1233456678888886543 34555556778888886
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-08 Score=87.65 Aligned_cols=243 Identities=10% Similarity=0.038 Sum_probs=145.4
Q ss_pred cceeeeEecC-cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE-cCceeEEEe-cCCcEEEEecC
Q 044557 20 SYVSSLALAG-KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV-LADKLFSAH-QDHKIRVWKIN 96 (362)
Q Consensus 20 ~~V~~l~~~~-~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~l~s~~-~dg~i~~w~~~ 96 (362)
.....+.+++ +..++...+++|.+||..+... ..... .......+.+ ..++++.+. .++.|.+||..
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~--~~~i~--------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~ 113 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKE--VGRIT--------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK 113 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCE--EEEEE--------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETT
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEE--EEEcC--------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECC
Confidence 3456777764 4556666689999999876431 11111 1123445555 345677776 78999999986
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEEECCCce
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIWRTSDFK 175 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~ 175 (362)
+.... ..++.... .+.......+++ .+++++++.. .++.|.++|..+++
T Consensus 114 t~~~~-------~~i~~g~~----------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 114 TYEIT-------GYIECPDM----------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp TTEEE-------EEEECTTC----------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE
T ss_pred CCeEE-------EEEEcCCc----------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe
Confidence 54311 01110000 000112334555 3444444433 48999999999998
Q ss_pred EEEeeeccCcccEEEEEEcCCCcEEEEeC-C----------CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCE
Q 044557 176 CLESITNAHDDAINAVALSDDGDVYTGSA-D----------KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244 (362)
Q Consensus 176 ~~~~~~~~h~~~v~~v~~~~~~~~~s~~~-d----------g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 244 (362)
.+..+..+ .....++++|+|+++.++. + +.|.++|..++.....+ . .. .......++|+|+++.
T Consensus 164 ~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~-~-~~-~g~~p~~la~~~d~~~ 238 (328)
T 3dsm_A 164 VVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF-K-FK-LGDWPSEVQLNGTRDT 238 (328)
T ss_dssp EEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE-E-CC-TTCCCEEEEECTTSCE
T ss_pred EEEEEEcC--CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE-e-cC-CCCCceeEEEecCCCE
Confidence 87766532 3456788999998655443 3 78999998776422221 1 10 1235788999999999
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEe----eCCCcEEEeeCCCCceeeeeEe
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSG----SADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~----s~D~~i~~W~~~~~~~~~~~~l 314 (362)
|+.+.. .|.+||..+.+.. ....+..+......+++++ .++++. ..++.|.+|+.. ++.+.++
T Consensus 239 lyv~~~--~v~~~d~~t~~~~--~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~---g~~~~~i 308 (328)
T 3dsm_A 239 LYWINN--DIWRMPVEADRVP--VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ---GKLIDEF 308 (328)
T ss_dssp EEEESS--SEEEEETTCSSCC--SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT---CCEEEEE
T ss_pred EEEEcc--EEEEEECCCCcee--eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC---CCEEEEE
Confidence 998865 8999998754321 0011121234567888875 266666 678999999853 3444444
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-09 Score=96.52 Aligned_cols=182 Identities=7% Similarity=0.036 Sum_probs=118.3
Q ss_pred ceeeeEec--CcEEEEecCCCeEEEeecCCCCccc---ceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEec
Q 044557 21 YVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSEL---DQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKI 95 (362)
Q Consensus 21 ~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~ 95 (362)
.+..|+++ ..++++|+.|+ +++|+++...... ...+. ...... ... +..+.+.++.|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~-~~~~~~-lp~-V~~l~fd~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLT-FKWEKE-IPD-VIFVCFHGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC-CSEEEE-CTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccccc-ceEEee-CCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence 57777774 56889998874 5569865321000 00010 111112 234 88888844457776 8999999998
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK 175 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 175 (362)
....... ....|...+.++.+.+. .+++++.||.|.+||+.++.
T Consensus 114 ~sl~~~~----------------------------------~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~ 157 (388)
T 1xip_A 114 EELSEFR----------------------------------TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS 157 (388)
T ss_dssp SSTTCEE----------------------------------EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred hhhhccC----------------------------------ccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc
Confidence 7543100 01123344555555443 28889999999999999876
Q ss_pred EEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCC--ccee--ehhhh---ccccceeEEEEecCCCEEEEE
Q 044557 176 CLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNK--KHSL--VDVLE---RHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 176 ~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~--~~~~--~~~~~---~h~~~v~~i~~s~~~~~l~s~ 248 (362)
... +...|.+++|+|+| ++.|..||++++|+.+.... ...+ ...+. .|...|.+|.|.+++.++++-
T Consensus 158 ~~~-----~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 158 TKQ-----LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEE-----EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ccc-----ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 543 34589999999999 78899999999998876542 1111 11122 367889999999999988864
Q ss_pred c
Q 044557 249 A 249 (362)
Q Consensus 249 ~ 249 (362)
+
T Consensus 232 ~ 232 (388)
T 1xip_A 232 G 232 (388)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-06 Score=75.98 Aligned_cols=259 Identities=12% Similarity=0.085 Sum_probs=156.1
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEec-CCcEEE
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQ-DHKIRV 92 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~-dg~i~~ 92 (362)
.....+.+|.++ ++..++...++.|.+||.. .. .. .+... .....+..+.+.++ .++.+.. ++.|..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~--~~-~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR--IK-EFEVP-----TPDAKVMCLIVSSLGDIWFTENGANKIGK 87 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--EE-EEECS-----STTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc--eE-EEECC-----CCCCcceeEEECCCCCEEEEecCCCeEEE
Confidence 445677888884 6677777678999999865 21 11 11100 01134556666543 3555544 677888
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
|+.+ +.. ... ..+ .....+.++++.++++++++...++.|..++..
T Consensus 88 ~d~~-g~~-----~~~-~~~---------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 133 (300)
T 2qc5_A 88 LSKK-GGF-----TEY-PLP---------------------------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD 133 (300)
T ss_dssp ECTT-SCE-----EEE-ECS---------------------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred ECCC-CCe-----EEe-cCC---------------------------CCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence 8765 221 000 000 012346788899999988877778899999987
Q ss_pred CceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC
Q 044557 173 DFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD 251 (362)
Q Consensus 173 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d 251 (362)
++............+..+++.+++.++.+. .++.|..++. ++... .. ....+...+..+++.++|...++....
T Consensus 134 -g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~--~~~~~~~~~~~i~~d~~g~l~v~~~~~ 208 (300)
T 2qc5_A 134 -GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE-EY--PLPTNAAAPVGITSGNDGALWFVEIMG 208 (300)
T ss_dssp -SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EE--ECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred -CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE-Ee--eCCCCCCCcceEEECCCCCEEEEccCC
Confidence 544322222234568899999999866554 4788999987 43321 11 112234567889999999877777777
Q ss_pred CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 252 RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 252 ~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
+.|..|+. .+ ..... ....+...+.+++++++ +.++...++.|..|+. ..... ...+......+.++++.++
T Consensus 209 ~~i~~~~~-~g--~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~ 282 (300)
T 2qc5_A 209 NKIGRITT-TG--EISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKD 282 (300)
T ss_dssp TEEEEECT-TC--CEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTT
T ss_pred CEEEEEcC-CC--cEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCC
Confidence 88999987 22 22221 23334556788888643 5666666789999985 22222 1123334455777776543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=98.40 Aligned_cols=186 Identities=9% Similarity=-0.026 Sum_probs=114.8
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEE-------------------EEEcCCCc-EEEE-----
Q 044557 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINA-------------------VALSDDGD-VYTG----- 202 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~-------------------v~~~~~~~-~~s~----- 202 (362)
+.|+||++.|+.++.++.|.+||+.+++...... .+...... +.++|++. ++..
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYT-VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe-cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 5789999999999999999999998876544332 23322222 34567775 3322
Q ss_pred eCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec-CCCEEEEEcCC------CcEEEEeccCCCCcEEEEEeecCc
Q 044557 203 SADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACD------RSIIVWEKEEDDGNILVVGALRGH 275 (362)
Q Consensus 203 ~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~h 275 (362)
..+..|.+||+.++... .+ ..+...+..+.|+| ++..|+..+.+ ..|.+|++.... ... +..+
T Consensus 165 ~~~~~l~~~d~~~g~~~-~~----~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~---l~~~ 234 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELE-VI----HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRK---IKEH 234 (396)
T ss_dssp CCCEEEEEEETTTCCEE-EE----EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEE---SSCC
T ss_pred CCcceEEEEECCCCcEE-ee----ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeE---eecc
Confidence 45678999999876422 11 13566788999999 78877765543 358888876432 111 2222
Q ss_pred --cceeEEEEEeCC--eEEEeeCC-----CcEEEeeCCCCceeeeeEecCCCCcEEEEEeee-cCCccCCCCCceEEEec
Q 044557 276 --TKSILCMAVVSD--LVCSGSAD-----KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI-DNDRCDSSDTSYLVCSG 345 (362)
Q Consensus 276 --~~~v~~~~~~~~--~~~s~s~D-----~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~~~~~~~~~~l~s~ 345 (362)
...+..+.|+++ .++.++.+ +.|.+|+........+..+.+ .. ++|+| ++ .+|+.+
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg---------~~l~~~ 300 (396)
T 3c5m_A 235 AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDG---------SLMVGD 300 (396)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSS---------SEEEEE
T ss_pred CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCC---------ceEEEe
Confidence 235677888764 56555443 449999965443333333332 22 67776 53 345443
Q ss_pred C----------------CCCcEEEEeccc
Q 044557 346 S----------------LDCDIKVWQISF 358 (362)
Q Consensus 346 s----------------~D~~i~~W~~~~ 358 (362)
+ .+..|.+||+..
T Consensus 301 ~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 301 GCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp ECCC----------CCCCCCEEEEEETTT
T ss_pred cCCcceeeccccccccCCCCcEEEEeccc
Confidence 2 347899999853
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-08 Score=86.52 Aligned_cols=198 Identities=14% Similarity=0.131 Sum_probs=126.6
Q ss_pred CceeEEEEecCCCEEEE-------EECCCcEEEEECCCceEEEeee---ccCcccEEEEEEcCC-CcEEEEeCCCeEEEE
Q 044557 143 DAVSALALTKDETLLYS-------VSWDRTIKIWRTSDFKCLESIT---NAHDDAINAVALSDD-GDVYTGSADKKIKVW 211 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s-------~s~d~~i~iwd~~~~~~~~~~~---~~h~~~v~~v~~~~~-~~~~s~~~dg~i~iw 211 (362)
....+++|+++++++++ +..++.|.+||..+++...... ..+...+.+++++++ +.++.++..+.|.+|
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~ 97 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence 45678999999988887 5778999999987776533211 124456889999999 887777666689999
Q ss_pred eCCCCCCccee-ehhhh-ccccceeEEEEecCCCEEEEEcCC---------------CcEEEEeccCCCCcEEEEEeecC
Q 044557 212 RRSPGNKKHSL-VDVLE-RHNSGINALALSCDGSVLYSGACD---------------RSIIVWEKEEDDGNILVVGALRG 274 (362)
Q Consensus 212 ~~~~~~~~~~~-~~~~~-~h~~~v~~i~~s~~~~~l~s~~~d---------------~~i~~wd~~~~~~~~~~~~~~~~ 274 (362)
|.. +... .+ ..... .....+..++++++|..+++...+ +.|..|+.. ...... ..
T Consensus 98 d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~~~---~~ 169 (314)
T 1pjx_A 98 QTD-GTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD---GQMIQV---DT 169 (314)
T ss_dssp ETT-SCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT---SCEEEE---EE
T ss_pred eCC-CCEE-EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC---CCEEEe---cc
Confidence 987 4321 11 11111 122458899999999888877665 456666653 222221 11
Q ss_pred ccceeEEEEEe----CC---eEEEeeCCCcEEEeeCC-CCce---eeeeEecCCC-CcEEEEEeeecCCccCCCCCceEE
Q 044557 275 HTKSILCMAVV----SD---LVCSGSADKTIRIWRGI-DRNY---TCLAVLEGHR-GPVKCLAAAIDNDRCDSSDTSYLV 342 (362)
Q Consensus 275 h~~~v~~~~~~----~~---~~~s~s~D~~i~~W~~~-~~~~---~~~~~l~~h~-~~v~~~~~~~~~~~~~~~~~~~~l 342 (362)
+......++++ ++ ++++.+.++.|.+|+.. .... .....+.++. ..+..+++.+++ .++
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G---------~l~ 240 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN---------NLL 240 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC---------CEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC---------CEE
Confidence 22334566777 55 34555678899999853 1111 1233444554 567778776543 456
Q ss_pred EecCCCCcEEEEecc
Q 044557 343 CSGSLDCDIKVWQIS 357 (362)
Q Consensus 343 ~s~s~D~~i~~W~~~ 357 (362)
++...++.|.+||..
T Consensus 241 v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 241 VANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEETTTEEEEECTT
T ss_pred EEEcCCCEEEEEcCC
Confidence 666667899999875
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-08 Score=99.99 Aligned_cols=200 Identities=16% Similarity=0.171 Sum_probs=121.8
Q ss_pred cCceeEEEEecCCCEEEE-----EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC---------
Q 044557 142 VDAVSALALTKDETLLYS-----VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADK--------- 206 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s-----~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg--------- 206 (362)
...+..++|+||+++||- |+++..|++||+.+++.+.... +......++|+ ||+ |+.+..+.
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 345778899999998873 3334579999999988654321 11112467899 886 76666653
Q ss_pred ----eEEEEeCCCCCCcceeehhhhc-cccceeEEEEecCCCEEEEEc----CCCcEEEEeccCCCCcEEEEEeecCccc
Q 044557 207 ----KIKVWRRSPGNKKHSLVDVLER-HNSGINALALSCDGSVLYSGA----CDRSIIVWEKEEDDGNILVVGALRGHTK 277 (362)
Q Consensus 207 ----~i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~~~~~l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~h~~ 277 (362)
.|++|++.+......++..... |...+..+.|+|||++|+... .++.|+++|+.++......+ ..+..
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l---~~~~~ 281 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV---QGDLD 281 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE---ECSSS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE---eCCCC
Confidence 4999998765433233333333 445567899999999886443 23589999987654333322 23333
Q ss_pred eeEE-EEEeCC-eEEEeeCC---CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCC--c
Q 044557 278 SILC-MAVVSD-LVCSGSAD---KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC--D 350 (362)
Q Consensus 278 ~v~~-~~~~~~-~~~s~s~D---~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~--~ 350 (362)
.... +...++ +++.+..| +.|..++...........+..|...+. .|+++++ +++++...|+ .
T Consensus 282 ~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~--------~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 282 ADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG--------YLFAEYMVDATAR 351 (693)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT--------EEEEEEEETTEEE
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC--------EEEEEEEECCeeE
Confidence 3333 334445 44555444 567777754322211345667777765 7777654 3555555565 5
Q ss_pred EEEEecc
Q 044557 351 IKVWQIS 357 (362)
Q Consensus 351 i~~W~~~ 357 (362)
|++|++.
T Consensus 352 l~~~d~~ 358 (693)
T 3iuj_A 352 VEQFDYE 358 (693)
T ss_dssp EEEECTT
T ss_pred EEEEECC
Confidence 7788764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.8e-08 Score=91.94 Aligned_cols=191 Identities=10% Similarity=0.080 Sum_probs=127.9
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCC--CCCCcceeehhhh
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRS--PGNKKHSLVDVLE 227 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~--~~~~~~~~~~~~~ 227 (362)
+|.+.++++...+++|.++|..+++.+..+..+ ..+..+.|+|+|+ +++++.|+.|.+||+. +.... ..+.
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v----~~i~ 237 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV----AEIK 237 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE----EEEE
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe----EEEe
Confidence 455567777888999999999999888877533 3567899999997 7788899999999985 44322 2222
Q ss_pred ccccceeEEEEe----cCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeec-------Cccc-eeEEEEEeC---CeEEE
Q 044557 228 RHNSGINALALS----CDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALR-------GHTK-SILCMAVVS---DLVCS 291 (362)
Q Consensus 228 ~h~~~v~~i~~s----~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~-------~h~~-~v~~~~~~~---~~~~s 291 (362)
. ......++|+ |||+++++++. +++|.++|..+.+. ...+.... .|.. .+..+..+. .++++
T Consensus 238 ~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 238 I-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp C-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred c-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 2 2235689999 69999887775 58999999776432 22221110 1222 455665553 36777
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...+|.|.+++........+..+ .......++.|+|++. +++++...+++|.++|+..
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr--------~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHR--------YFITAANARNKLVVIDTKE 373 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSC--------EEEEEEGGGTEEEEEETTT
T ss_pred ecCCCeEEEEecCCCccceeeee-eccccccCceECCCCC--------EEEEEeCCCCeEEEEECCC
Confidence 88889999998654332223333 2344566777766543 4566666778899999863
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-07 Score=86.01 Aligned_cols=196 Identities=12% Similarity=0.095 Sum_probs=125.9
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC--eEEEEeCCCCCCc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADK--KIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg--~i~iw~~~~~~~~ 219 (362)
.....++++++++++++...++.|++||..++....... .. .... ++|++++. ++++..++ .|.+++...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~-~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP-GF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE-TC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec-cC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 456789999999988877778999999998876654333 22 2233 89999987 66776655 7888887654321
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe--ecCcccee-E-EEEEeCC---eEEEe
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA--LRGHTKSI-L-CMAVVSD---LVCSG 292 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~h~~~v-~-~~~~~~~---~~~s~ 292 (362)
..+-.........+..++++|++..|+.+..++.|+.||..... ...... ..++...- . .++++++ ++++-
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 11100001134557789999966666667778899999987543 222211 12222222 2 7888762 67777
Q ss_pred eCCCcEEEeeCCCCceeeeeEecCCC---------------CcEEEEEeeecCCccCCCCCceEEEecC-CCCcEEEEec
Q 044557 293 SADKTIRIWRGIDRNYTCLAVLEGHR---------------GPVKCLAAAIDNDRCDSSDTSYLVCSGS-LDCDIKVWQI 356 (362)
Q Consensus 293 s~D~~i~~W~~~~~~~~~~~~l~~h~---------------~~v~~~~~~~~~~~~~~~~~~~~l~s~s-~D~~i~~W~~ 356 (362)
+.++.|+.|+.... +..+.++. .....+++++++ .++++-+ .++.|+.|++
T Consensus 286 ~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG---------~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 286 QNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG---------NFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp TTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC---------CEEEEETTTTCEEEEEET
T ss_pred CCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC---------CEEEEeCCCCCEEEEEEC
Confidence 78899999985332 22333332 346778886543 4566666 7889999984
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=9.8e-07 Score=77.70 Aligned_cols=175 Identities=15% Similarity=0.032 Sum_probs=108.3
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc---CcccEEEEEEcCCCcEEEEeC-------CCeEEEEe
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA---HDDAINAVALSDDGDVYTGSA-------DKKIKVWR 212 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~s~~~-------dg~i~iw~ 212 (362)
..+.+++++|+++++++. . ..|.+||..+++........ ....+..++++|+|.++.++. .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 457889999999877754 3 45999998877643222111 123588999999998665543 23454454
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEecc--CC-C-CcEEEEEeecCccceeEEEEEeC-
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKE--ED-D-GNILVVGALRGHTKSILCMAVVS- 286 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~--~~-~-~~~~~~~~~~~h~~~v~~~~~~~- 286 (362)
++. ...+ ..+......++|+|||+.|+.+ +.++.|.+|+.. ++ . ........+.........+.+++
T Consensus 168 --~g~-~~~~----~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~ 240 (326)
T 2ghs_A 168 --KGK-VTKL----FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE 240 (326)
T ss_dssp --TTE-EEEE----EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred --CCc-EEEe----eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC
Confidence 332 1111 1222346789999999877554 567899999975 32 1 11122223333344556777764
Q ss_pred -CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee-ec
Q 044557 287 -DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA-ID 329 (362)
Q Consensus 287 -~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~-~~ 329 (362)
.+.++...++.|.+|+.. ...+..+..+...+.+++|. ++
T Consensus 241 G~lwva~~~~~~v~~~d~~---g~~~~~i~~~~~~~~~~af~g~d 282 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDTD---GNHIARYEVPGKQTTCPAFIGPD 282 (326)
T ss_dssp SCEEEEEETTTEEEEECTT---CCEEEEEECSCSBEEEEEEESTT
T ss_pred CCEEEEEeCCCEEEEECCC---CCEEEEEECCCCCcEEEEEecCC
Confidence 356666667889999852 34455666667789999997 44
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-06 Score=73.08 Aligned_cols=195 Identities=11% Similarity=0.029 Sum_probs=125.8
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcce
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~ 221 (362)
..+.+++++++++++++...++.|..||.. ++............+.++++.++|.++.+. .++.|..++.. +... .
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~ 138 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-E 138 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-E
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-E
Confidence 356788899999988877778899999987 544322211233568899999999866554 47899999876 4321 1
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEE
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIR 299 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~ 299 (362)
. .+......+..+++.++|+..++...++.|..++. .+. .... ....+...+..+.+.++ +.++....+.|.
T Consensus 139 ~--~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 139 Y--DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK--LEEY-PLPTNAAAPVGITSGNDGALWFVEIMGNKIG 212 (300)
T ss_dssp E--ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEE-ECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred c--cCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc--EEEe-eCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence 1 11223456788999999997777766788999987 322 2221 23334456778888643 566666677899
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+|+. ...... ..+..+...+.++++.+++ .+.++...++.|..|+..
T Consensus 213 ~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g---------~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 213 RITT-TGEISE-YDIPTPNARPHAITAGKNS---------EIWFTEWGANQIGRITND 259 (300)
T ss_dssp EECT-TCCEEE-EECSSTTCCEEEEEECSTT---------CEEEEETTTTEEEEECTT
T ss_pred EEcC-CCcEEE-EECCCCCCCceEEEECCCC---------CEEEeccCCCeEEEECCC
Confidence 9985 222221 1233455678888886543 345555556788888763
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-07 Score=82.89 Aligned_cols=193 Identities=15% Similarity=0.133 Sum_probs=121.9
Q ss_pred EEEecCCCEEEEEECCC--cEEEEECCCceEEEee---eccCcccEEEEEEcC-CCcEEEEeCCCeEEEEeCCCCCCcce
Q 044557 148 LALTKDETLLYSVSWDR--TIKIWRTSDFKCLESI---TNAHDDAINAVALSD-DGDVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~---~~~h~~~v~~v~~~~-~~~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
++++|+++.|+++..++ .|.+++.........+ .......+.+++++| ++.++.+..++.|..||..++.. .
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~--~ 253 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV--T 253 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE--E
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE--E
Confidence 88999999999888766 7888887654332222 111344567899999 67777777889999999876541 1
Q ss_pred eehh--hhcccc--ceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEee--cCc---------cceeEEEEEe
Q 044557 222 LVDV--LERHNS--GINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGAL--RGH---------TKSILCMAVV 285 (362)
Q Consensus 222 ~~~~--~~~h~~--~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~h---------~~~v~~~~~~ 285 (362)
.... ...+.. |...++|+|+ +..+++-...+.|+.|+.... .....+.. .+. ......++++
T Consensus 254 ~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d 331 (409)
T 3hrp_A 254 LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVD 331 (409)
T ss_dssp EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC
T ss_pred EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe
Confidence 2100 111111 1238999995 556666677889999987532 11111110 010 1235678887
Q ss_pred CC--eEEEee-CCCcEEEeeCCCCceeeeeEecCC---------------CCcEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 286 SD--LVCSGS-ADKTIRIWRGIDRNYTCLAVLEGH---------------RGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 286 ~~--~~~s~s-~D~~i~~W~~~~~~~~~~~~l~~h---------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
++ ++++-+ .++.|+.|+..... +.++.++ -....++++.++ +.++++-..
T Consensus 332 ~dG~lyvad~~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~---------g~lyVad~~ 399 (409)
T 3hrp_A 332 EDGNFYIVDGFKGYCLRKLDILDGY---VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE---------GGYWIAEAW 399 (409)
T ss_dssp TTCCEEEEETTTTCEEEEEETTTTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS---------SEEEEEEST
T ss_pred CCCCEEEEeCCCCCEEEEEECCCCE---EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC---------CCEEEEECC
Confidence 54 777777 88999999843322 3344444 245788888654 356777777
Q ss_pred CCcEEEEec
Q 044557 348 DCDIKVWQI 356 (362)
Q Consensus 348 D~~i~~W~~ 356 (362)
.+.||.+++
T Consensus 400 n~~Ir~i~~ 408 (409)
T 3hrp_A 400 GKAIRKYAV 408 (409)
T ss_dssp TCEEEEEEE
T ss_pred CCeEEEEEe
Confidence 888888765
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-06 Score=77.67 Aligned_cols=267 Identities=9% Similarity=0.037 Sum_probs=147.7
Q ss_pred eEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCccc
Q 044557 25 LALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQK 104 (362)
Q Consensus 25 l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~ 104 (362)
+...+..++.++.|+.|..+|..+..... ..... ...........+.++.++.++.|..+|..+++.....
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W--~~~~~-------~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~ 169 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAW--QTKVA-------GEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTV 169 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEE--EEECS-------SCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEE--EEeCC-------CceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 34456678888889999999987644222 11110 0111122334667888888999999998765421100
Q ss_pred ceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccC
Q 044557 105 YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH 184 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h 184 (362)
.... ... ..... ...... +..++.++.++.|..+|..+++.+-......
T Consensus 170 -----~~~~---~~~-----------------~~~~~----~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~ 218 (376)
T 3q7m_A 170 -----NLDM---PSL-----------------SLRGE----SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 218 (376)
T ss_dssp -----ECCC-------------------------CCC----CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred -----eCCC---Cce-----------------eecCC----CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence 0000 000 00000 011111 3457778889999999999887765443211
Q ss_pred ccc---------EEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEE
Q 044557 185 DDA---------INAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 185 ~~~---------v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
... +.......++.++.++.++.+..+|..+++...... ......+.. ++..|+.++.++.+.
T Consensus 219 ~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~------~~~~~~~~~--~~~~l~~~~~~g~l~ 290 (376)
T 3q7m_A 219 ATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE------LGSVNDFIV--DGNRIYLVDQNDRVM 290 (376)
T ss_dssp -----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC------CCCEEEEEE--ETTEEEEEETTCCEE
T ss_pred CCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc------CCCCCCceE--ECCEEEEEcCCCeEE
Confidence 000 000001125668888889999999998876432211 112333333 477888888999999
Q ss_pred EEeccCCCCcEEEEEeec-CccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccC
Q 044557 256 VWEKEEDDGNILVVGALR-GHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCD 334 (362)
Q Consensus 256 ~wd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~ 334 (362)
.+|..+++.. .... .....+......++.+..++.++.+..++... ++.+.........+.......
T Consensus 291 ~~d~~tG~~~----w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~t--G~~~~~~~~~~~~~~~~~~~~------ 358 (376)
T 3q7m_A 291 ALTIDGGVTL----WTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVED--GRFVAQQKVDSSGFQTEPVAA------ 358 (376)
T ss_dssp EEETTTCCEE----EEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTT--CCEEEEEECCTTCBCSCCEEE------
T ss_pred EEECCCCcEE----EeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCC--CcEEEEEecCCCcceeCCEEE------
Confidence 9998865421 1122 11122333444577888999999999999543 344444433222222111111
Q ss_pred CCCCceEEEecCCCCcEEEEe
Q 044557 335 SSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 335 ~~~~~~~l~s~s~D~~i~~W~ 355 (362)
++ .|+.++.||.|..|+
T Consensus 359 ---~~-~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 359 ---DG-KLLIQAKDGTVYSIT 375 (376)
T ss_dssp ---TT-EEEEEBTTSCEEEEE
T ss_pred ---CC-EEEEEeCCCEEEEEe
Confidence 12 366778899999886
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-06 Score=74.48 Aligned_cols=229 Identities=12% Similarity=0.110 Sum_probs=133.1
Q ss_pred ccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCCcEEEEe
Q 044557 19 NSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDHKIRVWK 94 (362)
Q Consensus 19 ~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg~i~~w~ 94 (362)
..--.+..|+ +.++++...++.|..||..+... ..+ .....+.++.+.++ .++.+. ++.|.+|+
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~--------~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d 79 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---QRV--------TMDAPVSSVALRQSGGYVATI-GTKFCALN 79 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEE--------ECSSCEEEEEEBTTSSEEEEE-TTEEEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE---EEE--------eCCCceEEEEECCCCCEEEEE-CCeEEEEE
Confidence 3334455663 45677777889999999765321 111 01234566766654 355555 66788888
Q ss_pred cCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC---------Cc
Q 044557 95 INNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD---------RT 165 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---------~~ 165 (362)
.+.+.. ..+...... .....+..++++|+|+++++...+ ..
T Consensus 80 ~~~g~~-----~~~~~~~~~-------------------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 80 WKEQSA-----VVLATVDND-------------------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp TTTTEE-----EEEEECCTT-------------------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCCCcE-----EEEEecCCC-------------------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 754321 111111000 011246788999999977755322 33
Q ss_pred EEEEECCC-ceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCC--CCCCc-ceeehhhhccccceeEEEEe
Q 044557 166 IKIWRTSD-FKCLESITNAHDDAINAVALSDDGD-V-YTGSADKKIKVWRRS--PGNKK-HSLVDVLERHNSGINALALS 239 (362)
Q Consensus 166 i~iwd~~~-~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~--~~~~~-~~~~~~~~~h~~~v~~i~~s 239 (362)
-.||.+.. ++... +. .+....+.++|+|+++ + ++.+.++.|.+|++. ++... ......+..+......+++.
T Consensus 130 ~~l~~~d~~g~~~~-~~-~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 130 GALYSLFPDHHVKK-YF-DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID 207 (297)
T ss_dssp EEEEEECTTSCEEE-EE-EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred cEEEEEECCCCEEE-Ee-eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence 45665543 33222 22 2334568899999996 4 455668899999874 33211 11111222234567789999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-C---eEEEeeCC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-D---LVCSGSAD 295 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~---~~~s~s~D 295 (362)
++|.+.++....+.|..||..+++ .+..+..+...+.+++|.+ + +++|...+
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG~----~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTGK----RLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTCC----EEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCCCEEEEEcCCCEEEEEcCCCce----EEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 999877777778889999986533 2334455556789999973 2 44554443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-09 Score=98.75 Aligned_cols=188 Identities=15% Similarity=0.127 Sum_probs=95.5
Q ss_pred EcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC
Q 044557 76 VLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET 155 (362)
Q Consensus 76 ~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 155 (362)
+.++.+++++.|+.|..||..+++.... . . . +.+.+..+..++.
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~-------~----------------------~------~-~~~~s~p~~~~g~ 50 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWT-------L----------------------K------E-DPVLQVPTHVEEP 50 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEE-------E----------------------E------C-CCSCCCC-----C
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEE-------e----------------------c------C-CCceecceEcCCC
Confidence 3467799999999999999877652110 0 0 0 1222223345677
Q ss_pred EEEEEECCCcEEEEECCCceEEEeeeccCcccEE-EEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcccccee
Q 044557 156 LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN-AVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN 234 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~ 234 (362)
.+++++.|+.|+.||.++++.+..+.......+. +..+..++.+++++.|+.|..||..+++..... ..+.
T Consensus 51 ~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~----~~~~---- 122 (369)
T 2hz6_A 51 AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTL----SSAF---- 122 (369)
T ss_dssp CEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------
T ss_pred EEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEe----cCCC----
Confidence 7777889999999999888765544321111110 011123556788889999999999988654322 1121
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-----CeEEEeeCCCcEEEeeCCCCcee
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-----DLVCSGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~s~s~D~~i~~W~~~~~~~~ 309 (362)
...++|++..+++++.|+.|+.||..+++...... ... .....+.+ +.++.++.|+.|+.||... ++
T Consensus 123 ~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t--G~ 194 (369)
T 2hz6_A 123 ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT--YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES--GD 194 (369)
T ss_dssp ----------EEEEEEEEEEECCCSSSSSCCCEEE--EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT--CC
T ss_pred cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe--ccc----ccCccccCCccccceEEEECCCCEEEEEECCC--Cc
Confidence 23456788999999999999999998765332211 111 11122233 5677889999999999543 34
Q ss_pred eeeEec
Q 044557 310 CLAVLE 315 (362)
Q Consensus 310 ~~~~l~ 315 (362)
.+....
T Consensus 195 ~~W~~~ 200 (369)
T 2hz6_A 195 VLWIQN 200 (369)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 444444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.9e-07 Score=76.81 Aligned_cols=172 Identities=12% Similarity=0.050 Sum_probs=101.7
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccC----cccEEEEEEcCCCcEEE-----EeC---------
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH----DDAINAVALSDDGDVYT-----GSA--------- 204 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h----~~~v~~v~~~~~~~~~s-----~~~--------- 204 (362)
..+..++++++++++++...++.|.+|+.. ++. ..+.... ...+..+++.|+|.++. |..
T Consensus 86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred CccceeeECCCCCEEEEECCCCEEEEECCC-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccc
Confidence 456789999999977666566899999976 442 2221111 12356799999998665 332
Q ss_pred ----CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC------CcEEEEeccCCCCcEEEEEee-c
Q 044557 205 ----DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD------RSIIVWEKEEDDGNILVVGAL-R 273 (362)
Q Consensus 205 ----dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~-~ 273 (362)
.+.|..||..++... .+. .....+.++|+||++.|+.+... +.|..|++.... ......+ .
T Consensus 164 ~~~~~~~v~~~d~~~g~~~-~~~-----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~ 235 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQ-RMA-----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFAS 235 (305)
T ss_dssp CSSSCEEEEEECSSSCCCE-EEE-----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEEC
T ss_pred cccCCCeEEEEcCCCCcEE-EEe-----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEE
Confidence 245777776555322 111 22345789999999988877665 689999986432 1111111 1
Q ss_pred CccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 274 GHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 274 ~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
........+.++++ .+..+..+ .|.+|+.. .+.+..+..+. .+..++|.++
T Consensus 236 ~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~---g~~~~~~~~~~-~~~~~~f~~d 287 (305)
T 3dr2_A 236 VPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSD---GQLLGHIPTPG-TASNCTFDQA 287 (305)
T ss_dssp CSSSCCCSEEECTTSCEEECCSS-EEEEECTT---SCEEEEEECSS-CCCEEEECTT
T ss_pred CCCCCCCeEEECCCCCEEEecCC-cEEEECCC---CCEEEEEECCC-ceeEEEEeCC
Confidence 11222344556533 34444444 48889742 34455555444 5788888644
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.6e-05 Score=68.25 Aligned_cols=193 Identities=10% Similarity=0.018 Sum_probs=113.7
Q ss_pred eeEEEEecCCCEEEEEEC--CCcEEEEECCCceEEEe-eeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCc
Q 044557 145 VSALALTKDETLLYSVSW--DRTIKIWRTSDFKCLES-ITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~-~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~ 219 (362)
...++++||+++|+.+.. ++.|.++| .+++.+.. +..+ . ++.+.|++. +++.+.||++.+++. +++..
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~--~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP--T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC--c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence 347889999999998874 47899999 99888776 5321 1 244555552 677788999999998 65432
Q ss_pred ceee--hhhhccccce-eEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC----------ccceeEEEEEeC
Q 044557 220 HSLV--DVLERHNSGI-NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG----------HTKSILCMAVVS 286 (362)
Q Consensus 220 ~~~~--~~~~~h~~~v-~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~ 286 (362)
.... ... ....++ ....+.+++..++..+..+.+.+.|+...... .+..+.- .......+.+++
T Consensus 200 ~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~--v~~~~~~~~~~~~~~~~~p~g~~~~~~s~ 276 (373)
T 2mad_H 200 GAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT--NKAPIDALSGGRKADTWRPGGWQQVAYLK 276 (373)
T ss_pred EEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce--EeeeeeecCCcccccceecCceEeEEECC
Confidence 1110 001 111222 23456676665555557888999998643211 1222210 011122244543
Q ss_pred --CeE-EEee---------CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC-CCCcEEE
Q 044557 287 --DLV-CSGS---------ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS-LDCDIKV 353 (362)
Q Consensus 287 --~~~-~s~s---------~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s-~D~~i~~ 353 (362)
+.+ ++.. .++.|-+.|. .+.+.++++. -....+.++|+|+++ ++++++. .+++|.+
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~--~t~~vv~~i~-~g~~p~~i~~s~Dg~--------~~l~v~~~~~~~V~V 345 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTG--LVGQTSSQIS-LGHDVDAISVAQDGG--------PDLYALSAGTEVLHI 345 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEEC--CCCEEEEEEE-CCCCcCeEEECCCCC--------eEEEEEcCCCCeEEE
Confidence 333 3322 1356877785 3455566664 233588899987654 2455655 5899999
Q ss_pred Eeccc
Q 044557 354 WQISF 358 (362)
Q Consensus 354 W~~~~ 358 (362)
+|++.
T Consensus 346 iD~~t 350 (373)
T 2mad_H 346 YDAGA 350 (373)
T ss_pred EECCC
Confidence 99864
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-05 Score=69.76 Aligned_cols=275 Identities=8% Similarity=0.019 Sum_probs=149.4
Q ss_pred eEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEe-ecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcc
Q 044557 25 LALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAV-GKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQ 103 (362)
Q Consensus 25 l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~ 103 (362)
..+.+..++.++.++.|..+|.++.................. .......+....+.++.++.++.|..+|.++++....
T Consensus 49 p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 49 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 334577888888999999999876543221111100000000 0112233445677899999999999999876652110
Q ss_pred cceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc
Q 044557 104 KYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA 183 (362)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 183 (362)
..... ......... +..++.++.++.|..+|.++++.+......
T Consensus 129 -----~~~~~-----------------------------~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 129 -----TKVAG-----------------------------EALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp -----EECSS-----------------------------CCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred -----EeCCC-----------------------------ceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence 00000 000000111 346777888999999999998876554321
Q ss_pred CcccEE------EEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcccc---ceeEEEEec--CCCEEEEEcCCC
Q 044557 184 HDDAIN------AVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS---GINALALSC--DGSVLYSGACDR 252 (362)
Q Consensus 184 h~~~v~------~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~---~v~~i~~s~--~~~~l~s~~~d~ 252 (362)
..+. ..... ++.++.+..++.+..+|..+++.............. .+..+.-.| .+..++.++.++
T Consensus 173 --~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g 249 (376)
T 3q7m_A 173 --MPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG 249 (376)
T ss_dssp --C-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS
T ss_pred --CCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc
Confidence 1111 11112 566888888999999999887643222110000000 000000111 357788888899
Q ss_pred cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecC-CCCcEEEEEeeecCC
Q 044557 253 SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEG-HRGPVKCLAAAIDND 331 (362)
Q Consensus 253 ~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~ 331 (362)
.+..+|..+++.. . ... ......+....+.+..++.++.+..++... ++.+..... ....+......
T Consensus 250 ~l~~~d~~tG~~~--w--~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~---- 317 (376)
T 3q7m_A 250 NLTALDLRSGQIM--W--KRE--LGSVNDFIVDGNRIYLVDQNDRVMALTIDG--GVTLWTQSDLLHRLLTSPVLY---- 317 (376)
T ss_dssp CEEEEETTTCCEE--E--EEC--CCCEEEEEEETTEEEEEETTCCEEEEETTT--CCEEEEECTTTTSCCCCCEEE----
T ss_pred EEEEEECCCCcEE--e--ecc--CCCCCCceEECCEEEEEcCCCeEEEEECCC--CcEEEeecccCCCcccCCEEE----
Confidence 9999998765421 1 111 223445566777888888999999998543 333333321 11111111111
Q ss_pred ccCCCCCceEEEecCCCCcEEEEecc
Q 044557 332 RCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 332 ~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+ ..|+.++.+|.+..+|..
T Consensus 318 ------~-~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 318 ------N-GNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp ------T-TEEEEECTTSEEEEEETT
T ss_pred ------C-CEEEEEeCCCeEEEEECC
Confidence 1 236667778888888864
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=4.3e-06 Score=73.52 Aligned_cols=193 Identities=7% Similarity=-0.028 Sum_probs=114.4
Q ss_pred eEEEEecCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 146 SALALTKDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 146 ~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
.+..|+|++ .++++...++.|..||..+++... +. ....+.++++.++|.++.++.+ .|.+||..++... .+..
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~-~~~~ 126 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA--LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT-LHAE 126 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EEEC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEE-EEee
Confidence 567789974 566666678999999998876432 32 2357899999999987766655 4899998766422 1211
Q ss_pred hhh-ccccceeEEEEecCCCEEEEEcCC----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCC
Q 044557 225 VLE-RHNSGINALALSCDGSVLYSGACD----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADK 296 (362)
Q Consensus 225 ~~~-~h~~~v~~i~~s~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~ 296 (362)
... .....++.++++|+|+.+++...+ +...+|.+.+ +....+ ..+......++++++ ++++.+.++
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~--g~~~~~---~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK--GKVTKL---FADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET--TEEEEE---EEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC--CcEEEe---eCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 111 112468899999999976655322 2234444332 222221 112233567777754 345666778
Q ss_pred cEEEeeCC--CC-ce---eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 297 TIRIWRGI--DR-NY---TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 297 ~i~~W~~~--~~-~~---~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.|.+|+.. .. .. ..+..+.+......++++.++ +.+.++...++.|.+|+..
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~---------G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE---------GHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT---------SCEEEEEETTTEEEEECTT
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC---------CCEEEEEeCCCEEEEECCC
Confidence 99999863 21 11 122333334445666666433 2445555455788888764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=7e-06 Score=79.60 Aligned_cols=271 Identities=13% Similarity=0.122 Sum_probs=146.4
Q ss_pred eeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEec------CCcEEEEecCC
Q 044557 24 SLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQ------DHKIRVWKINN 97 (362)
Q Consensus 24 ~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~------dg~i~~w~~~~ 97 (362)
.+.+.+..++.++.|+.|..+|..+..... .+...... ...........+..+.++.++. ++.|..+|..+
T Consensus 123 ~~a~~~~~v~v~~~dg~l~alD~~tG~~~W--~~~~~~~~-~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~t 199 (677)
T 1kb0_A 123 GVALWKGKVYVGAWDGRLIALDAATGKEVW--HQNTFEGQ-KGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAET 199 (677)
T ss_dssp CCEEETTEEEEECTTSEEEEEETTTCCEEE--EEETTTTC-CSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT
T ss_pred CceEECCEEEEEcCCCEEEEEECCCCCEEe--eecCCcCc-CcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCC
Confidence 345567788888999999999987654322 11110000 0000111122334566776654 78999999987
Q ss_pred CCCCcccceeeeeccCCC-c--------hhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC----
Q 044557 98 QEPDHQKYTRLATLPTLG-D--------RAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR---- 164 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~---- 164 (362)
++.... ....+... . .....+.+.. .... ..........++++|++..++.++.++
T Consensus 200 G~~~W~----~~~~~~~~~~~~~~~~~~~g~~~w~~~g--~~~~-----~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 200 GERKWR----WFSVPGDPSKPFEDESMKRAARTWDPSG--KWWE-----AGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp CCEEEE----EESSCCCTTSCCSSHHHHHHHTTSCGGG--CHHH-----HCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CcEEEE----eccCCCCccccccccccccccccccccC--ceeE-----eCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 663211 00000000 0 0000000000 0000 001122234677889888888887764
Q ss_pred ---------------cEEEEECCCceEEEeeeccCc--------ccEEEEEEcCCC---c-EEEEeCCCeEEEEeCCCCC
Q 044557 165 ---------------TIKIWRTSDFKCLESITNAHD--------DAINAVALSDDG---D-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 165 ---------------~i~iwd~~~~~~~~~~~~~h~--------~~v~~v~~~~~~---~-~~s~~~dg~i~iw~~~~~~ 217 (362)
.|..+|.++++.+-.+...+. .....+....+| . ++.++.+|.+.++|..+++
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 499999999987765543221 111222233355 3 7788999999999999887
Q ss_pred Ccceeehhh-------hccccce------------------------eEEEEecCCCEEEEEcCC---------------
Q 044557 218 KKHSLVDVL-------ERHNSGI------------------------NALALSCDGSVLYSGACD--------------- 251 (362)
Q Consensus 218 ~~~~~~~~~-------~~h~~~v------------------------~~i~~s~~~~~l~s~~~d--------------- 251 (362)
......... .....++ ..++++|++..+++...+
T Consensus 349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~ 428 (677)
T 1kb0_A 349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ 428 (677)
T ss_dssp EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence 533221000 0000000 257889998888876432
Q ss_pred ----------------------------CcEEEEeccCCCCcEEEEEeecCccceeE--EEEEeCCeEEEeeCCCcEEEe
Q 044557 252 ----------------------------RSIIVWEKEEDDGNILVVGALRGHTKSIL--CMAVVSDLVCSGSADKTIRIW 301 (362)
Q Consensus 252 ----------------------------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~s~s~D~~i~~W 301 (362)
+.|..||+.+++... ..+ +...+. .+...++.++.++.|+.+++|
T Consensus 429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W----~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW----SVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE----EEE-ESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEe----ecC-CCCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 678999987644221 111 111122 233345688888999999999
Q ss_pred eCCCCceeeeeEec
Q 044557 302 RGIDRNYTCLAVLE 315 (362)
Q Consensus 302 ~~~~~~~~~~~~l~ 315 (362)
|.. +++.+..+.
T Consensus 504 D~~--tG~~lw~~~ 515 (677)
T 1kb0_A 504 HAA--TGEKLWEAP 515 (677)
T ss_dssp ETT--TCCEEEEEE
T ss_pred ECC--CCceeeeee
Confidence 954 455666654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.70 E-value=2.9e-05 Score=69.28 Aligned_cols=274 Identities=13% Similarity=0.106 Sum_probs=149.5
Q ss_pred cCcEEEEecC-----CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe----------cCCcE
Q 044557 28 AGKFLYTGSS-----DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH----------QDHKI 90 (362)
Q Consensus 28 ~~~~l~t~s~-----Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~----------~dg~i 90 (362)
+++.++.... +++|.+.|..+... .. .+..+..+ .+.++++ .+|.++ .++.|
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v--~~-------~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRV--IG-------MIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEE--EE-------EEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeE--EE-------EEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEE
Confidence 4555555543 68999999876431 11 11223334 2666655 477665 36789
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC--CCcEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW--DRTIKI 168 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--d~~i~i 168 (362)
.+||..+.+... .+ .++.. .+ . ........++++|||++|+++.. ++.|.+
T Consensus 112 sviD~~t~~v~~----~I-~v~~g-~r----------~-----------~~g~~P~~~a~spDGk~lyVan~~~~~~VsV 164 (386)
T 3sjl_D 112 EVFDPVTLLPTA----DI-ELPDA-PR----------F-----------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGV 164 (386)
T ss_dssp EEECTTTCCEEE----EE-EETTC-CC----------C-----------CBSCCGGGEEECTTSSEEEEEECSSSCEEEE
T ss_pred EEEECCCCeEEE----EE-ECCCc-cc----------c-----------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEE
Confidence 999987654211 11 00000 00 0 00112346789999999998864 689999
Q ss_pred EECCCceEEEeeeccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCC-CCCcceeehhhhcccccee-EEEEe-cCCCE
Q 044557 169 WRTSDFKCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSP-GNKKHSLVDVLERHNSGIN-ALALS-CDGSV 244 (362)
Q Consensus 169 wd~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~h~~~v~-~i~~s-~~~~~ 244 (362)
+|+.+++.+.++.... . ...+..+. .+++.+.||++.+.++.+ +.........+..-..++. ...|. ++|++
T Consensus 165 ID~~t~~vv~tI~v~g---~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~ 240 (386)
T 3sjl_D 165 VDLEGKAFKRMLDVPD---C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL 240 (386)
T ss_dssp EETTTTEEEEEEECCS---E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EECCCCcEEEEEECCC---c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE
Confidence 9999999888875322 1 11222222 367888888888888875 3321111011111112222 23554 67766
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeec---------C-ccceeEEEEEeC--C-eEEEeeC---------CCcEEEee
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALR---------G-HTKSILCMAVVS--D-LVCSGSA---------DKTIRIWR 302 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---------~-h~~~v~~~~~~~--~-~~~s~s~---------D~~i~~W~ 302 (362)
++ .+.+|+|.+.|...+.. .+...+. + .......+++++ + ++++... .+.|-+.|
T Consensus 241 ~~-vs~~g~V~v~d~~~~~~--~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD 317 (386)
T 3sjl_D 241 VW-PTYTGKIHQIDLSSGDA--KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 317 (386)
T ss_dssp EE-EBTTSEEEEEECTTSSC--EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred EE-EeCCCEEEEEECCCCcc--eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence 66 55589999999865332 1222221 1 111223344443 3 3333221 23566666
Q ss_pred CCCCceeeeeEec-CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GIDRNYTCLAVLE-GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
. .+.+.++.+. |+ .++.++++++++. .++++...+++|.++|..
T Consensus 318 ~--~t~kv~~~i~vg~--~~~~lavs~D~~~-------~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 318 A--KTGERLAKFEMGH--EIDSINVSQDEKP-------LLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp T--TTCCEEEEEEEEE--EECEEEECSSSSC-------EEEEEETTTTEEEEEETT
T ss_pred C--CCCeEEEEEECCC--CcceEEECCCCCe-------EEEEEcCCCCeEEEEECC
Confidence 4 3455565543 33 6889999877531 344445668999999985
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.9e-05 Score=75.45 Aligned_cols=273 Identities=14% Similarity=0.089 Sum_probs=145.0
Q ss_pred eEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe------cCCcEEEEecCCC
Q 044557 25 LALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH------QDHKIRVWKINNQ 98 (362)
Q Consensus 25 l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~------~dg~i~~w~~~~~ 98 (362)
+.+.+..++.++.|+.|.-+|..+............... ......+..+..+.++.++ .++.|..||.+++
T Consensus 117 ~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~---~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 193 (689)
T 1yiq_A 117 VAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKR---SYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETG 193 (689)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTS---CCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred cEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCC---CccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCC
Confidence 345567888899999999999877543221111000000 0000111123355666654 3789999999877
Q ss_pred CCCcccceeeeeccCCCc-----hhh-hhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc-------
Q 044557 99 EPDHQKYTRLATLPTLGD-----RAI-KLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT------- 165 (362)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~------- 165 (362)
+..-. ....+.... ... ....... ...+... ..+......++++|+..+++.++.++.
T Consensus 194 ~~~W~----~~~~~~~p~~~~~~~~~~~~~~~~~-g~~w~~~----~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~ 264 (689)
T 1yiq_A 194 KEAWR----FYTVPGDPKLPPEGKGMEIAAKTWF-GDAYVEQ----GGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWR 264 (689)
T ss_dssp CEEEE----EESSCCCTTSCCCSHHHHHHHTTCC-SSTHHHH----CEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred cEEEE----ecccCCCcccccccccccccccccC-Cceeeec----CCCCccccceeEcCCCCEEEEeCCCCCccccCCC
Confidence 63211 111110000 000 0000000 0000000 011122245788898899999988764
Q ss_pred ------------EEEEECCCceEEEeeecc-Cc-------ccEEEEEEcCCC----cEEEEeCCCeEEEEeCCCCCCcce
Q 044557 166 ------------IKIWRTSDFKCLESITNA-HD-------DAINAVALSDDG----DVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 166 ------------i~iwd~~~~~~~~~~~~~-h~-------~~v~~v~~~~~~----~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
|..+|.++++.+-.+... |. .++.......+| .++.++.+|.+.++|..+++....
T Consensus 265 ~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 265 SQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp HTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred CCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 999999999877655432 21 112111222244 267888999999999998864311
Q ss_pred eehh------------------------hhccc-----------cceeEEEEecCCCEEEEEcC----------------
Q 044557 222 LVDV------------------------LERHN-----------SGINALALSCDGSVLYSGAC---------------- 250 (362)
Q Consensus 222 ~~~~------------------------~~~h~-----------~~v~~i~~s~~~~~l~s~~~---------------- 250 (362)
.... ..... ..-..++|+|+...+++...
T Consensus 345 ~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~ 424 (689)
T 1yiq_A 345 KGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRN 424 (689)
T ss_dssp EESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCC
T ss_pred ccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccc
Confidence 1000 00000 00123788998888887632
Q ss_pred -----------------------------CCcEEEEeccCCCCcEEEEEeecCcccee-EEEEEeCCeEEEeeCCCcEEE
Q 044557 251 -----------------------------DRSIIVWEKEEDDGNILVVGALRGHTKSI-LCMAVVSDLVCSGSADKTIRI 300 (362)
Q Consensus 251 -----------------------------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~s~s~D~~i~~ 300 (362)
+|.|+.||+.+++... ..+.+.... -.+...+++++.++.|+.++.
T Consensus 425 ~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W----~~~~~~~~~~g~~~tagglvf~gt~dg~l~a 500 (689)
T 1yiq_A 425 PFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAW----EVPYVTIFNGGTLSTAGNLVFEGSADGRVIA 500 (689)
T ss_dssp SCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEE----EEEESSSCCCCEEEETTTEEEEECTTSEEEE
T ss_pred ccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEe----EccCCCCccCccceECCCEEEEECCCCcEEE
Confidence 3778899987654221 222222111 133345678889999999999
Q ss_pred eeCCCCceeeeeEec
Q 044557 301 WRGIDRNYTCLAVLE 315 (362)
Q Consensus 301 W~~~~~~~~~~~~l~ 315 (362)
||.. +++.+..+.
T Consensus 501 ~D~~--tG~~lw~~~ 513 (689)
T 1yiq_A 501 YAAD--TGEKLWEQP 513 (689)
T ss_dssp EETT--TCCEEEEEE
T ss_pred EECC--CCccceeee
Confidence 9954 456666665
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.1e-08 Score=90.15 Aligned_cols=181 Identities=12% Similarity=0.038 Sum_probs=91.0
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc--c
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER--H 229 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--h 229 (362)
++..+++++.|+.|+.||..+++.+-.+.. ..+.+..+.+++. +++++.||.|..||..+++........... .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 467889999999999999999988766543 3444444455665 667789999999999887654332111100 0
Q ss_pred ccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCcee
Q 044557 230 NSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 230 ~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~ 309 (362)
..++ +. ++..|++++.|+.|+.||..+++... .+..+.. + .+...++.+++++.|+.|+.||... ++
T Consensus 85 ~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w----~~~~~~~-~-~~~p~~~~v~~~~~dg~v~a~d~~t--G~ 151 (369)
T 2hz6_A 85 ASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQ----TLSSAFA-D-SLSPSTSLLYLGRTEYTITMYDTKT--RE 151 (369)
T ss_dssp TCSC----C------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSS--SS
T ss_pred cCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEE----EecCCCc-c-cccccCCEEEEEecCCEEEEEECCC--CC
Confidence 1111 11 35578888899999999998754321 2222221 1 1222456888899999999998543 23
Q ss_pred eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 310 CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 310 ~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+..+..+. ....++..+. ... ..++.++.||.|+.||..
T Consensus 152 ~~W~~~~~~--~~~~~~~~~~-----~~~-~~v~~~~~dg~v~a~d~~ 191 (369)
T 2hz6_A 152 LRWNATYFD--YAASLPEDDV-----DYK-MSHFVSNGDGLVVTVDSE 191 (369)
T ss_dssp CCCEEEEEE--ECCBCCCCCT-----TCC-CCEEEEETSCEEEEECTT
T ss_pred EEEeEeccc--ccCccccCCc-----ccc-ceEEEECCCCEEEEEECC
Confidence 333322111 1111111100 001 235567889999999874
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-06 Score=76.05 Aligned_cols=188 Identities=12% Similarity=0.096 Sum_probs=111.2
Q ss_pred ecCceeEEEEecCCCEEEEEEC-----CCcEEEEECCCceEEEeeecc-----CcccEEEEEEcCC-CcE-EEEe---CC
Q 044557 141 HVDAVSALALTKDETLLYSVSW-----DRTIKIWRTSDFKCLESITNA-----HDDAINAVALSDD-GDV-YTGS---AD 205 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~~~~~~~~~~~~-----h~~~v~~v~~~~~-~~~-~s~~---~d 205 (362)
|...+..++++++++++++-.. ++.|.+||+.+++.+..+... +...+..+++.++ +.+ ++.. .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 4567889999999887665443 579999999988866655421 2234688999975 554 4544 67
Q ss_pred CeEEEEeCCCCCCcceeeh--h---------hhc--------------cccceeEEEEecCCCEEEEEcCCC-cEEEEec
Q 044557 206 KKIKVWRRSPGNKKHSLVD--V---------LER--------------HNSGINALALSCDGSVLYSGACDR-SIIVWEK 259 (362)
Q Consensus 206 g~i~iw~~~~~~~~~~~~~--~---------~~~--------------h~~~v~~i~~s~~~~~l~s~~~d~-~i~~wd~ 259 (362)
+.|.+||+.++.....+.. . ..+ -...+..|+|+|||+.|+.+..++ .+..++.
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 8999999876542111100 0 000 012357899999999999888776 4444442
Q ss_pred cCC-CCcE---EEEE--eecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 260 EED-DGNI---LVVG--ALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 260 ~~~-~~~~---~~~~--~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
... .... .... ...++......+++++ .++++...++.|.+|+....+...+... .+...+.+++|.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFGSD 301 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEECTT
T ss_pred HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEECCC
Confidence 210 0000 0000 0012222344566654 4788888899999999522232222221 23456888988654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-05 Score=70.56 Aligned_cols=184 Identities=16% Similarity=0.127 Sum_probs=108.2
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
+.++...+++. ++.++.++.|..+|.. ++.+.... .....+.++.+.+++.++.++ +.|..+| .++.....
T Consensus 139 ~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~--- 209 (330)
T 3hxj_A 139 YATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK-TNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWN--- 209 (330)
T ss_dssp CSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEE---
T ss_pred eeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEE---
Confidence 34455666776 5557788999999988 66554443 233455667777788887777 7888888 44432211
Q ss_pred hhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEEEeeCCCcEEEeeC
Q 044557 225 VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~D~~i~~W~~ 303 (362)
.......+.++.+.++|. |+.++.++.+..++.. +. ... ........+..+... .+.+..++.++.+..++.
T Consensus 210 -~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~-~~~---~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 210 -FYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GT-EKW---RFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp -ECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SC-EEE---EEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred -EccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-CC-EeE---EeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 112334577788887764 5556677888888742 22 111 222222223334444 457778888888988873
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
. ...+..+.-....+.++.... ++. |..|+.+|.+++-...
T Consensus 283 -~--g~~~~~~~~~~~~~~~~~~d~---------~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 283 -D--GTEKWNFETGSWIIATPVIDE---------NGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp -T--SCEEEEEECSSCCCSCCEECT---------TCC-EEEECTTSCEEEEEC-
T ss_pred -C--CcEEEEEEcCCccccceEEcC---------CCE-EEEEcCCCeEEEEecc
Confidence 2 223333332333344443322 223 5567889999987764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=7.2e-05 Score=63.20 Aligned_cols=193 Identities=10% Similarity=0.043 Sum_probs=121.8
Q ss_pred eeEEEEecCCCEEEEEEC--CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCcce
Q 044557 145 VSALALTKDETLLYSVSW--DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~ 221 (362)
...++|+|++.+.++.+. ++.|++.|+.+++.+..+..+.......+++.. ++++ +.-.++.+.++|..+.+...+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEE
Confidence 578999998755554443 589999999999988876543333344566653 3554 455788999999987654333
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccc---eeEEEEEeCC-eEEEeeCCCc
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK---SILCMAVVSD-LVCSGSADKT 297 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~s~s~D~~ 297 (362)
+.. +... ...+++||+.|+.+..+++|.++|..+.+... .+. ...+.. .+..+.+... .+++...++.
T Consensus 102 i~~---g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~-~I~-Vg~~~~p~~~~nele~~dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 102 FTH---QMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIK-KHN-VKYNGHRVIRLNELEYINGEVWANIWQTDC 173 (266)
T ss_dssp EEC---CSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEE-EEE-CEETTEECCCEEEEEEETTEEEEEETTSSE
T ss_pred EEC---CCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEE-EEE-ECCCCcccccceeEEEECCEEEEecCCCCe
Confidence 211 1011 23466789888888888999999987643211 111 111111 2455666544 4555556778
Q ss_pred EEEeeCCCCceeeeeEecCC-------------CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 298 IRIWRGIDRNYTCLAVLEGH-------------RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h-------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|.+-|.. +++.++.+.-. ....+.++++|+++ .+++++....++.+-++
T Consensus 174 V~vID~~--tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~--------~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 174 IARISAK--DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK--------RIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEEEETT--TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT--------EEEEEETTCSEEEEEEE
T ss_pred EEEEECC--CCcEEEEEECCCcccccccccccccCceEEEEEcCCCC--------EEEEECCCCCeEEEEEE
Confidence 8888853 34455554311 13568999987654 57888888888877776
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-05 Score=69.12 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=95.8
Q ss_pred cCceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeC-CCeEEEEeCCCCCCc
Q 044557 142 VDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSA-DKKIKVWRRSPGNKK 219 (362)
Q Consensus 142 ~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~-dg~i~iw~~~~~~~~ 219 (362)
........|+|+++ ++++...++.|..|+.. ++. ..+. .+...+..+++.++|+++++.. ++.|.+|+.+ +. .
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~-~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~ 118 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLL-DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-A 118 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEE-ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEe-CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-E
Confidence 34556788999998 66777788999999984 432 3333 3456788999999999777664 4789999875 33 1
Q ss_pred ceeehhhhc-cccceeEEEEecCCCEEEE----EcC-------------CCcEEEEeccCCCCcEEEEEeecCccceeEE
Q 044557 220 HSLVDVLER-HNSGINALALSCDGSVLYS----GAC-------------DRSIIVWEKEEDDGNILVVGALRGHTKSILC 281 (362)
Q Consensus 220 ~~~~~~~~~-h~~~v~~i~~s~~~~~l~s----~~~-------------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~ 281 (362)
..+...... ....++.++++|+|...++ |.. .+.|..+|..+++. ..+. .......
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~~~~----~~~~p~g 192 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--QRMA----DLDHPNG 192 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--EEEE----EESSEEE
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--EEEe----cCCCCcc
Confidence 122111111 1235678999999998886 432 24566676644332 2221 2233466
Q ss_pred EEEeCC--eEEEeeCC------CcEEEeeCC
Q 044557 282 MAVVSD--LVCSGSAD------KTIRIWRGI 304 (362)
Q Consensus 282 ~~~~~~--~~~s~s~D------~~i~~W~~~ 304 (362)
++++++ .+..+..+ +.|.+|+..
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~ 223 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWR 223 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence 778765 45444443 688888854
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-05 Score=69.13 Aligned_cols=147 Identities=13% Similarity=0.024 Sum_probs=98.8
Q ss_pred EEecCCCEEEEEEC-----CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe----------CCCeEEEEe
Q 044557 149 ALTKDETLLYSVSW-----DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS----------ADKKIKVWR 212 (362)
Q Consensus 149 ~~~~~~~~l~s~s~-----d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~----------~dg~i~iw~ 212 (362)
...|+++.++.... ++.|.+.|..+++.+..+..+.. + . ++++|+|+ ++.++ .++.|.+||
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 34789998888876 67999999999998888764433 3 4 99999997 55544 367899999
Q ss_pred CCCCCCcceeehhhh-c---cccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC
Q 044557 213 RSPGNKKHSLVDVLE-R---HNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS 286 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~-~---h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 286 (362)
..+.+....+. .-. . .......++|+|||++|+.+.. ++.|.++|+.+.+ ++..+.-- +...-.....
T Consensus 116 ~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~----vv~tI~v~-g~~~~~P~g~ 189 (386)
T 3sjl_D 116 PVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA----FKRMLDVP-DCYHIFPTAP 189 (386)
T ss_dssp TTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE----EEEEEECC-SEEEEEEEET
T ss_pred CCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc----EEEEEECC-CcceeecCCC
Confidence 98876433321 110 0 0123456899999999998864 6899999998643 23333211 1111112234
Q ss_pred CeEEEeeCCCcEEEeeCC
Q 044557 287 DLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 287 ~~~~s~s~D~~i~~W~~~ 304 (362)
..+++.+.||.+-+.+..
T Consensus 190 ~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp TEEEEEETTSCEEEEECC
T ss_pred ceeEEECCCCCEEEEECC
Confidence 567788999998888753
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.54 E-value=5.2e-05 Score=63.46 Aligned_cols=183 Identities=9% Similarity=0.027 Sum_probs=111.1
Q ss_pred eeEEEEecCCCEEEEEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCcce
Q 044557 145 VSALALTKDETLLYSVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~ 221 (362)
...+.|+ ++.++.+.+.+| .|+++|+++++.+..+.......-..+++.. ++++ +.-.++.+.+||..+.+...+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-DKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-CEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4788888 677777777766 9999999999988877644332334455543 3454 445688999999988764443
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEEeCC-eEEEeeCCCcEE
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAVVSD-LVCSGSADKTIR 299 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~-~~~s~s~D~~i~ 299 (362)
+.. . . ....+++|++.|+.+..+++|.++|..+.+....+.-...+.. ..+..+.+... ..+..-.+..|.
T Consensus 123 i~~--~--~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 123 FNY--D--G---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIV 195 (262)
T ss_dssp EEC--S--S---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEE
T ss_pred EEC--C--C---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEE
Confidence 321 1 1 1133446888888777788899999876432111111111111 22334556544 455555677788
Q ss_pred EeeCCCCceeeeeEecCC------------CCcEEEEEeeecCCccCCCCCceEEEecC
Q 044557 300 IWRGIDRNYTCLAVLEGH------------RGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~s 346 (362)
+-|. ++++.++.+.-. .+-.+.+|++|+.+ .++++|-
T Consensus 196 vIDp--~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~--------~lfVTGK 244 (262)
T 3nol_A 196 RIDP--ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH--------RLFVTGK 244 (262)
T ss_dssp EECT--TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT--------EEEEEET
T ss_pred EEEC--CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC--------EEEEECC
Confidence 8774 344445444311 13558899987654 4677774
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.2e-05 Score=69.46 Aligned_cols=119 Identities=15% Similarity=0.167 Sum_probs=77.6
Q ss_pred CceeEEEEecCCCEEEEEE--CCCcEEEEECCCceEEEee------eccCcccEEEEEEcCCCcEEEEeC------CCeE
Q 044557 143 DAVSALALTKDETLLYSVS--WDRTIKIWRTSDFKCLESI------TNAHDDAINAVALSDDGDVYTGSA------DKKI 208 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~------~~~h~~~v~~v~~~~~~~~~s~~~------dg~i 208 (362)
..+..++++|+++++++.. .++.++||.+.+++.. .+ ...+...+..+++.++++|+.+.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5678999999999988864 2343666665555433 11 112445789999999998766543 5799
Q ss_pred EEEeCCCCCCcceee--hhhhccccceeEEEEecCCCEE-EEEc---CCCcEEEEeccCC
Q 044557 209 KVWRRSPGNKKHSLV--DVLERHNSGINALALSCDGSVL-YSGA---CDRSIIVWEKEED 262 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~--~~~~~h~~~v~~i~~s~~~~~l-~s~~---~d~~i~~wd~~~~ 262 (362)
.+||+.++.....+. .....+...+..++++|++..+ ++.. .++.|.+||..++
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g 155 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG 155 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC
Confidence 999998764222221 1111233456899999865554 4544 5789999998753
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.7e-05 Score=67.69 Aligned_cols=195 Identities=11% Similarity=0.050 Sum_probs=112.3
Q ss_pred eEEEEecCCCEEEEEEC--CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcce
Q 044557 146 SALALTKDETLLYSVSW--DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
..+.++||+++|+++.. ++.|.+.|+.+.+.+..+..+.. ....|++ .+++.+.||++.+.+..++.....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 35679999999999875 57899999999998887754321 2233333 256667777777777643322110
Q ss_pred eehhhhccccce-eEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC----------ccceeEEEEEeC--C-
Q 044557 222 LVDVLERHNSGI-NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG----------HTKSILCMAVVS--D- 287 (362)
Q Consensus 222 ~~~~~~~h~~~v-~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~--~- 287 (362)
....+.....++ ..+.+.+++..++..+..+.|.+.|..... ...+..+.- ......-+++++ .
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~--~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~r 332 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG--ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDR 332 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC--EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc--eEEeeeeeeccccccccccccCCceeeEEcCCCCE
Confidence 000111111121 235678999888877888999999986432 111111110 001111234543 3
Q ss_pred eEEEee---------CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC-CCCcEEEEecc
Q 044557 288 LVCSGS---------ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS-LDCDIKVWQIS 357 (362)
Q Consensus 288 ~~~s~s---------~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s-~D~~i~~W~~~ 357 (362)
++++.. .++.|-+.|.. +.+.++++.. ....+.++|+|+++ .+++++. .+++|.++|+.
T Consensus 333 lyVa~~~~~~gthk~~s~~VsVID~~--T~kvv~~I~v-g~~P~gia~spDg~--------~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 333 IYLLVDQRDEWKHKAASRFVVVLNAE--TGERINKIEL-GHEIDSINVSQDAE--------PLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETT--TCCEEEEEEE-EEEECEEEECCSSS--------CEEEEEETTTTEEEEEETT
T ss_pred EEEEecccccccccCCCCEEEEEECC--CCeEEEEEEC-CCCcCeEEEccCCC--------EEEEEEcCCCCeEEEEECC
Confidence 333332 13468888853 3455665541 12478888887653 1355554 68999999986
Q ss_pred c
Q 044557 358 F 358 (362)
Q Consensus 358 ~ 358 (362)
.
T Consensus 402 t 402 (426)
T 3c75_H 402 T 402 (426)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3e-05 Score=75.49 Aligned_cols=193 Identities=12% Similarity=0.110 Sum_probs=106.8
Q ss_pred eEEEEecCCCEEEEEECCC-------------cEEEEECCCceE--EEeee-cc-CcccEEEEEEcCCCc-E-EEEe---
Q 044557 146 SALALTKDETLLYSVSWDR-------------TIKIWRTSDFKC--LESIT-NA-HDDAINAVALSDDGD-V-YTGS--- 203 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~-------------~i~iwd~~~~~~--~~~~~-~~-h~~~v~~v~~~~~~~-~-~s~~--- 203 (362)
..++|+ |++.|+.++.|. .|++|++.+... ..... .. |...+.++.++|+|+ + ++.+
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 456799 999888888774 399999877542 11111 12 334577899999997 3 3333
Q ss_pred CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEE-EEcCC---CcEEEEeccCCCC-cEEEEEeecCccce
Q 044557 204 ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACD---RSIIVWEKEEDDG-NILVVGALRGHTKS 278 (362)
Q Consensus 204 ~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d---~~i~~wd~~~~~~-~~~~~~~~~~h~~~ 278 (362)
.+..|.++|+.++...... +..+....... ++++|..|+ ....+ +.|..+++..... .... +..|...
T Consensus 257 ~~~~i~~~d~~~~~~~~~~---l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~~ 329 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLT---VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD---LIPERQQ 329 (693)
T ss_dssp SCCEEEEEETTSTTCCCEE---EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EECCCSS
T ss_pred CCcEEEEEECCCCCCceEE---EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE---EecCCCC
Confidence 2358999998765422111 22333444443 667666555 44443 5688888876432 1122 2234433
Q ss_pred eEEEEEeCCeEEEee-CCC--cEEEeeCCCCceeeeeEec-CCCCcEEEEEeeecCCccCCCCCceEEEecCC---CCcE
Q 044557 279 ILCMAVVSDLVCSGS-ADK--TIRIWRGIDRNYTCLAVLE-GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL---DCDI 351 (362)
Q Consensus 279 v~~~~~~~~~~~s~s-~D~--~i~~W~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~---D~~i 351 (362)
+..+...++.|+... .|+ .|++|+.... ....+. .+...+..+++++++ ..++++.+. -++|
T Consensus 330 ~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---~~~~l~~p~~~~~~~~~~~~d~--------~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 330 VLTVHSGSGYLFAEYMVDATARVEQFDYEGK---RVREVALPGLGSVSGFNGKHDD--------PALYFGFENYAQPPTL 398 (693)
T ss_dssp CEEEEEETTEEEEEEEETTEEEEEEECTTSC---EEEEECCSSSSEEEECCCCTTC--------SCEEEEEECSSSCCEE
T ss_pred EEEEEEECCEEEEEEEECCeeEEEEEECCCC---eeEEeecCCCceEEeeecCCCC--------CEEEEEecCCCCCCEE
Confidence 446666677655444 454 5778875422 223332 334455555544332 223333322 2678
Q ss_pred EEEecc
Q 044557 352 KVWQIS 357 (362)
Q Consensus 352 ~~W~~~ 357 (362)
..||+.
T Consensus 399 ~~~d~~ 404 (693)
T 3iuj_A 399 YRFEPK 404 (693)
T ss_dssp EEECTT
T ss_pred EEEECC
Confidence 888764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-05 Score=69.34 Aligned_cols=175 Identities=16% Similarity=0.156 Sum_probs=104.0
Q ss_pred CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccce
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
+..+..++.++.|..+|.. ++...... .+...+.++...+++.++.++.++.|..+|.. +...... ......+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~----~~~~~~~ 179 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF----KTNDAIT 179 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE----ECSSCCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE----ecCCCce
Confidence 4456778889999999988 65544433 23334556667778889999999999999987 5422221 1223456
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeee
Q 044557 234 NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 234 ~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
.++.+.+++...+ ++ +.+..+| .++. .. .........+.++...++ .+..++.++.+..++.. ...+.
T Consensus 180 ~~~~~d~~g~l~v-~t--~~l~~~d-~~g~--~~--~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~---g~~~~ 248 (330)
T 3hxj_A 180 SAASIGKDGTIYF-GS--DKVYAIN-PDGT--EK--WNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD---GTEKW 248 (330)
T ss_dssp SCCEECTTCCEEE-ES--SSEEEEC-TTSC--EE--EEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTT---SCEEE
T ss_pred eeeEEcCCCEEEE-Ee--CEEEEEC-CCCc--EE--EEEccCCcceeceEECCCCeEEEEcCCCeEEEECCC---CCEeE
Confidence 6677777776544 44 7899998 4322 21 122223345667777655 77778888888888632 22233
Q ss_pred EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 313 VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 313 ~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.+......+..+.+. ..+. |..++.+|.|..+|.
T Consensus 249 ~~~~~~~~~~~~~~~---------~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 249 RFKTGKRIESSPVIG---------NTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp EEECSSCCCSCCEEC---------TTSC-EEEECTTCEEEEECT
T ss_pred EeeCCCCccccceEc---------CCCe-EEEecCCCCEEEECC
Confidence 333222222222221 1122 455666777777774
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00015 Score=70.38 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=110.0
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEee--cceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVG--KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
.+..++.++.++.|.-+|..+....+.............. ......+....+.++.++.|+.|..+|..+++.....
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~- 147 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSV- 147 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE-
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeee-
Confidence 4667777888999999998765432221111000000000 0001223445678999999999999999876532110
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-----CCCcEEEEECCCceEEEee
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-----WDRTIKIWRTSDFKCLESI 180 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-----~d~~i~iwd~~~~~~~~~~ 180 (362)
........ ... ....++ + .++.+++..+ .++.|..||.++++.+-.+
T Consensus 148 ----~~~~~~~~---------~~~----------~~~sP~--v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 148 ----DTRADHKR---------SYT----------ITGAPR--V---VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp ----ECCSCTTS---------CCB----------CCSCCE--E---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ----cCcCCCCC---------Ccc----------ccCCcE--E---ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 00000000 000 000011 1 1344433322 3789999999999876554
Q ss_pred eccC-c----------------------------cc-EEEEEEcCCCc-EEEEeCCC-------------------eEEE
Q 044557 181 TNAH-D----------------------------DA-INAVALSDDGD-VYTGSADK-------------------KIKV 210 (362)
Q Consensus 181 ~~~h-~----------------------------~~-v~~v~~~~~~~-~~s~~~dg-------------------~i~i 210 (362)
.... . .. ...+++.|++. ++.+..++ .|.-
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 3110 0 00 12467777654 66776665 3999
Q ss_pred EeCCCCCCcceeehhhhccc-------cceeEEEEecCCC---EEEEEcCCCcEEEEeccCCC
Q 044557 211 WRRSPGNKKHSLVDVLERHN-------SGINALALSCDGS---VLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~-------~~v~~i~~s~~~~---~l~s~~~d~~i~~wd~~~~~ 263 (362)
+|.++++..-.... ..|. .+........+|+ .++.++.+|.++++|..+++
T Consensus 280 lD~~TG~~~W~~~~--~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 280 VNADTGEYVWHYQT--TPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp EETTTCCEEEEEES--STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred EEccCCceeEeeec--CCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99998875433211 1121 1222223334665 78999999999999987654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00014 Score=60.83 Aligned_cols=197 Identities=14% Similarity=0.180 Sum_probs=117.8
Q ss_pred eeccceeeecccCccc--eeeeEec-CcEEEEecCCC--eEEEeecCCCCcccceeeeccceeEEeecce-eEEEEEcCc
Q 044557 6 VVDHHCLTTLKGHNSY--VSSLALA-GKFLYTGSSDN--EVRSWDCNTFSSELDQEFLSNNNIVAVGKGA-VKSLVVLAD 79 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~~--V~~l~~~-~~~l~t~s~Dg--~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~ 79 (362)
.-..+.++++ .|... ...|.++ +.+.++.+.+| .|++.|+++..... ... ..... ...+...++
T Consensus 28 ~~~~~vv~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~--~~~-------l~~~~FgeGit~~g~ 97 (262)
T 3nol_A 28 IYDYQIVHSY-PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQ--QIE-------LGKRYFGEGISDWKD 97 (262)
T ss_dssp EEEEEEEEEE-ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEE--EEE-------CCTTCCEEEEEEETT
T ss_pred ccceEEEEEe-cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEE--EEe-------cCCccceeEEEEeCC
Confidence 3344556666 45443 3778886 45566666665 89999988754211 111 11111 123455677
Q ss_pred eeEEEec-CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE
Q 044557 80 KLFSAHQ-DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 80 ~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
+|+...+ ++.+.+||.++.+. +..++.. . ....+++|++.|+
T Consensus 98 ~ly~ltw~~~~v~v~D~~t~~~-------~~ti~~~----------------------------~--eG~glt~dg~~L~ 140 (262)
T 3nol_A 98 KIVGLTWKNGLGFVWNIRNLRQ-------VRSFNYD----------------------------G--EGWGLTHNDQYLI 140 (262)
T ss_dssp EEEEEESSSSEEEEEETTTCCE-------EEEEECS----------------------------S--CCCCEEECSSCEE
T ss_pred EEEEEEeeCCEEEEEECccCcE-------EEEEECC----------------------------C--CceEEecCCCEEE
Confidence 8777664 78899999876442 1111110 0 1123346677777
Q ss_pred EEECCCcEEEEECCCceEEEeeeccC-c---ccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcceeeh-hhhc----
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAH-D---DAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVD-VLER---- 228 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h-~---~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~~~~-~~~~---- 228 (362)
.+..++.|.++|.++.+.+..+.... . ..++.+.+. +|++++.. .++.|.+.|..+++....+.. .+..
T Consensus 141 ~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~ 219 (262)
T 3nol_A 141 MSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP 219 (262)
T ss_dssp ECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS
T ss_pred EECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc
Confidence 76667889999999988877765321 1 234456666 67766555 578999999988864433311 0110
Q ss_pred -c--ccceeEEEEecCCCEEEEEcC
Q 044557 229 -H--NSGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 229 -h--~~~v~~i~~s~~~~~l~s~~~ 250 (362)
+ ..-.+.|+++|+++.|+..|.
T Consensus 220 ~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 220 LPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccCcCCceEEEEEcCCCCEEEEECC
Confidence 1 124578999999888887774
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00014 Score=65.81 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=76.9
Q ss_pred EEEEecCCCEEEEEE-------------------CCCcEEEEECCCceEEEeeecc-CcccEEEEEE--cCCCc--EEEE
Q 044557 147 ALALTKDETLLYSVS-------------------WDRTIKIWRTSDFKCLESITNA-HDDAINAVAL--SDDGD--VYTG 202 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s-------------------~d~~i~iwd~~~~~~~~~~~~~-h~~~v~~v~~--~~~~~--~~s~ 202 (362)
.+.|+|+++.+++.. .+.+|.+||+.+++.+.++..+ .......+.| +|+++ ++++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence 466799999888875 3689999999998888877653 2234456666 89987 3344
Q ss_pred e-----CCCeEEEEeCCCCCCcc-eee--h------hh---h----ccccceeEEEEecCCCEEEEEcC-CCcEEEEecc
Q 044557 203 S-----ADKKIKVWRRSPGNKKH-SLV--D------VL---E----RHNSGINALALSCDGSVLYSGAC-DRSIIVWEKE 260 (362)
Q Consensus 203 ~-----~dg~i~iw~~~~~~~~~-~~~--~------~~---~----~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~ 260 (362)
- .+++|.+|..+.+.... ..+ . .+ . +-......|.+||||++|+++.. .+.|.+||+.
T Consensus 272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 4 67788776654321000 000 0 00 0 00234678999999999987765 6789999986
Q ss_pred CC
Q 044557 261 ED 262 (362)
Q Consensus 261 ~~ 262 (362)
..
T Consensus 352 d~ 353 (462)
T 2ece_A 352 NP 353 (462)
T ss_dssp ST
T ss_pred CC
Confidence 43
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00024 Score=63.52 Aligned_cols=143 Identities=7% Similarity=-0.125 Sum_probs=91.6
Q ss_pred ecCCCEEEEEEC--CC---cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe----------CCCeEEEEeCC
Q 044557 151 TKDETLLYSVSW--DR---TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS----------ADKKIKVWRRS 214 (362)
Q Consensus 151 ~~~~~~l~s~s~--d~---~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~----------~dg~i~iw~~~ 214 (362)
.|++++++++.. .. .|.++|..+++.+..+..+ ..+ .++++|+|+ ++.+. .++.|.+||..
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 467777776653 22 8899999999887766533 223 899999997 55543 36789999998
Q ss_pred CCCCcceeehhh-hc---cccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEe-ecCccceeEEEEEeCC
Q 044557 215 PGNKKHSLVDVL-ER---HNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVVSD 287 (362)
Q Consensus 215 ~~~~~~~~~~~~-~~---h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~ 287 (362)
+.+....+. .. .. +......++|+|||++|+.+.. ++.|.++| .+.+ .+.. +.- ...+......+.
T Consensus 106 t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~----~~~~~i~~-~~~~~~~~~~~~ 178 (373)
T 2mad_H 106 TFLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS----SDDQLLSS-PTCYHIHPGAPS 178 (373)
T ss_pred CCcEEEEEE-CCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC----EEeEEcCC-CceEEEEeCCCc
Confidence 765333221 10 00 0122457899999999998874 57899999 7543 2222 221 122221222334
Q ss_pred eEEEeeCCCcEEEeeC
Q 044557 288 LVCSGSADKTIRIWRG 303 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~ 303 (362)
.+++.+.|+.+.+++.
T Consensus 179 ~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH 194 (373)
T ss_pred eEEEEcCCCCEEEEEC
Confidence 6778889999999986
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00023 Score=68.96 Aligned_cols=204 Identities=8% Similarity=0.047 Sum_probs=109.5
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeE--EeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIV--AVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
.+..++.++.++.|.-+|..+....+........... .........+.+..+.++.++.|+.|..+|..+++.....
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~- 154 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ- 154 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE-
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeee-
Confidence 4566777778899999998765432211111000000 0000011233456778999999999999999876532110
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC------CCcEEEEECCCceEEEe
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW------DRTIKIWRTSDFKCLES 179 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~ 179 (362)
........ ...+.+.-.-.++ .++.++. ++.|+.+|.++++.+-.
T Consensus 155 ----~~~~~~~~------------------------~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 155 ----NTFEGQKG------------------------SLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ----ETTTTCCS------------------------SCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ----cCCcCcCc------------------------CcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 00000000 0000000001133 3444432 78999999999987655
Q ss_pred eeccCcc-------------------------------cEEEEEEcCCCc-EEEEeCCC-------------------eE
Q 044557 180 ITNAHDD-------------------------------AINAVALSDDGD-VYTGSADK-------------------KI 208 (362)
Q Consensus 180 ~~~~h~~-------------------------------~v~~v~~~~~~~-~~s~~~dg-------------------~i 208 (362)
+...... ....+++.|++. ++.+..++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 4321100 012467777654 66665553 58
Q ss_pred EEEeCCCCCCcceeehhhhccc-------cceeEEEEecCC---CEEEEEcCCCcEEEEeccCCC
Q 044557 209 KVWRRSPGNKKHSLVDVLERHN-------SGINALALSCDG---SVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~~~~~~h~-------~~v~~i~~s~~~---~~l~s~~~d~~i~~wd~~~~~ 263 (362)
..+|..+++...... ...|. .....+....+| ..|+.++.+|.++++|..+++
T Consensus 286 ~AlD~~TG~~~W~~~--~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQ--ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp EEECTTTCCEEEEEE--SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred EEEECCCCCEEEEEe--cCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 889998886443221 11121 122223444577 689999999999999988754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00023 Score=59.55 Aligned_cols=192 Identities=10% Similarity=0.139 Sum_probs=116.4
Q ss_pred ceeeecccCcc--ceeeeEecC-cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc-eeEEEEEcCceeEEEe
Q 044557 10 HCLTTLKGHNS--YVSSLALAG-KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG-AVKSLVVLADKLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~--~V~~l~~~~-~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~l~s~~ 85 (362)
+.++++ .|.. ....|.+++ .+.++.+.+|.|+++|+++....... + ... -...+...+++|+.+.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l---------~~~~FgeGit~~g~~Ly~lt 112 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R---------LGNIFAEGLASDGERLYQLT 112 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E---------CTTCCEEEEEECSSCEEEEE
T ss_pred EEEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C---------CCCcceeEEEEeCCEEEEEE
Confidence 455555 4443 346788864 56677888899999998875432211 1 111 1123555677777665
Q ss_pred -cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 86 -QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 86 -~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
.++.+.+||.++.+. +..++.. . ....+.+|++.|+.+..++
T Consensus 113 w~~~~v~V~D~~Tl~~-------~~ti~~~----------------------------~--eGwGLt~Dg~~L~vSdGs~ 155 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQR-------ERTTRYS----------------------------G--EGWGLCYWNGKLVRSDGGT 155 (268)
T ss_dssp SSSCEEEEEETTTTEE-------EEEEECS----------------------------S--CCCCEEEETTEEEEECSSS
T ss_pred ccCCEEEEEECCcCcE-------EEEEeCC----------------------------C--ceeEEecCCCEEEEECCCC
Confidence 578899999865431 1111110 0 0122345678887777789
Q ss_pred cEEEEECCCceEEEeeecc-Cc---ccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcceeehh-hh------cc--c
Q 044557 165 TIKIWRTSDFKCLESITNA-HD---DAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVDV-LE------RH--N 230 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~-h~---~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~~~~~-~~------~h--~ 230 (362)
.|.++|.++.+.+..+... +. ..++.+.+. +|++++.. .++.|.+.|..+++....+.-. +. .+ .
T Consensus 156 ~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~ 234 (268)
T 3nok_A 156 MLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPE 234 (268)
T ss_dssp EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTT
T ss_pred EEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcC
Confidence 9999999999887766432 11 134566666 67766555 5789999999888644333211 11 11 1
Q ss_pred cceeEEEEecCCCEEEEEcC
Q 044557 231 SGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~ 250 (362)
.-.+.|+++|+++.|+..+.
T Consensus 235 ~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 235 AVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CCEEEEEECTTTCCEEEEET
T ss_pred CceEEEEEcCCCCEEEEeCC
Confidence 24578999998777666553
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00061 Score=57.50 Aligned_cols=209 Identities=13% Similarity=0.149 Sum_probs=125.6
Q ss_pred eeccceeeecccCcc--ceeeeEecC--cEEEEecC--CCeEEEeecCCCCcccceeeeccceeEEeecc-eeEEEEEcC
Q 044557 6 VVDHHCLTTLKGHNS--YVSSLALAG--KFLYTGSS--DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG-AVKSLVVLA 78 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~--~V~~l~~~~--~~l~t~s~--Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~ 78 (362)
....+.++++ .|.. ....|.+++ .+.++.+. +++|++.|+.+.... .... .... ....+.+.+
T Consensus 6 ~~~~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~--~~i~-------l~~~~fgeGi~~~g 75 (266)
T 2iwa_A 6 VYIVEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE--NIHK-------MDDSYFGEGLTLLN 75 (266)
T ss_dssp EEEEEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE--EEEE-------CCTTCCEEEEEEET
T ss_pred ccCceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE--EEEe-------cCCCcceEEEEEeC
Confidence 3455666777 3443 357888864 34444443 689999998775421 1111 0111 122345556
Q ss_pred ceeEEEe-cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 79 DKLFSAH-QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 79 ~~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
+.|+.+. .++.+.++|..+.+. +..++.. .-....+++|++.|
T Consensus 76 ~~lyv~t~~~~~v~viD~~t~~v-------~~~i~~g-----------------------------~~~g~glt~Dg~~l 119 (266)
T 2iwa_A 76 EKLYQVVWLKNIGFIYDRRTLSN-------IKNFTHQ-----------------------------MKDGWGLATDGKIL 119 (266)
T ss_dssp TEEEEEETTCSEEEEEETTTTEE-------EEEEECC-----------------------------SSSCCEEEECSSSE
T ss_pred CEEEEEEecCCEEEEEECCCCcE-------EEEEECC-----------------------------CCCeEEEEECCCEE
Confidence 7777665 468899999865331 1111110 00112356678777
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCc----ccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcceeeh-hhh----
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHD----DAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVD-VLE---- 227 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~----~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~~~~-~~~---- 227 (362)
+++..+++|.+.|.++.+.+..+..+.. ...+.+.+. +|++++.. .++.|.+.|..+++....+.. .+.
T Consensus 120 ~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~ 198 (266)
T 2iwa_A 120 YGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLI 198 (266)
T ss_dssp EEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHH
T ss_pred EEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 7777789999999999887777653211 135677777 67765554 578999999998875444321 110
Q ss_pred --ccc--cceeEEEEecCCCEEE-EEcCCCcEEEEeccC
Q 044557 228 --RHN--SGINALALSCDGSVLY-SGACDRSIIVWEKEE 261 (362)
Q Consensus 228 --~h~--~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~ 261 (362)
.+. ...+.|+|+|+++.++ ++...+.+...++..
T Consensus 199 ~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 199 DEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp HTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 011 2457899999987655 555777887777654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00041 Score=57.51 Aligned_cols=183 Identities=11% Similarity=0.031 Sum_probs=110.6
Q ss_pred ceeEEEEecCCCEEEEEECC--CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDETLLYSVSWD--RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~ 220 (362)
-...+.|++ +.++.+.+.+ ..|+.+|+.+++.+..+.......-..+++.. ++++ ..-.++.+.+||..+.+...
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEE
Confidence 466888886 5666666665 48999999999988877544332334455543 4444 45678999999998865443
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccc---eeEEEEEeCC-eEEEeeCCC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK---SILCMAVVSD-LVCSGSADK 296 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~s~s~D~ 296 (362)
++.. ...+ ..+++|++.|+.+..++.|.++|..+.+.... + ....+.. .+..+.+... .++....+.
T Consensus 100 ti~~----~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~-I-~V~~~g~~~~~lNeLe~~~G~lyanvw~s~ 170 (243)
T 3mbr_X 100 RFRY----PGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGS-I-KVTAGGRPLDNLNELEWVNGELLANVWLTS 170 (243)
T ss_dssp EEEC----SSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEE-E-ECEETTEECCCEEEEEEETTEEEEEETTTT
T ss_pred EEeC----CCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEE-E-EEccCCcccccceeeEEeCCEEEEEECCCC
Confidence 3321 1111 23446788888777789999999876432111 1 1111222 2345566544 445554566
Q ss_pred cEEEeeCCCCceeeeeEecC-------------CCCcEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 297 TIRIWRGIDRNYTCLAVLEG-------------HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~~l~~-------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
.|.+-|. ++++.+..+.- -.+-.+++|+.|+.+ .++++|-.
T Consensus 171 ~I~vIDp--~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~--------~lfVTGK~ 224 (243)
T 3mbr_X 171 RIARIDP--ASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD--------RLFVTGKR 224 (243)
T ss_dssp EEEEECT--TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT--------EEEEEETT
T ss_pred eEEEEEC--CCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC--------EEEEECCC
Confidence 7777774 33444544321 123568899987654 57778743
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00029 Score=63.70 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=111.8
Q ss_pred cCCCEEEE-EECCCcEEEEECCCc----eEEEeee------ccCcccEEEEEEcCCCcEEEEeCC------CeEEEEeCC
Q 044557 152 KDETLLYS-VSWDRTIKIWRTSDF----KCLESIT------NAHDDAINAVALSDDGDVYTGSAD------KKIKVWRRS 214 (362)
Q Consensus 152 ~~~~~l~s-~s~d~~i~iwd~~~~----~~~~~~~------~~h~~~v~~v~~~~~~~~~s~~~d------g~i~iw~~~ 214 (362)
++.++|+. +..+++|.++|+.+. +..+.+. ..-......+...|+|-++++..+ |.|.++|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 77777666 456789999998654 5555442 001123455777899944444333 789999988
Q ss_pred CCCCcceeehhhhccccc-eeEEEEecCCCEEEEEc-------------------CCCcEEEEeccCCCCcEEEEEeecC
Q 044557 215 PGNKKHSLVDVLERHNSG-INALALSCDGSVLYSGA-------------------CDRSIIVWEKEEDDGNILVVGALRG 274 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~-v~~i~~s~~~~~l~s~~-------------------~d~~i~~wd~~~~~~~~~~~~~~~~ 274 (362)
+.+...++.. ...... -..+.|+|+++.+++.. .+.+|.+||+.+. . .+.++.-
T Consensus 173 T~~v~~~~~~--~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--k--~~~tI~v 246 (462)
T 2ece_A 173 SFEPLGKWEI--DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--K--RIHSLTL 246 (462)
T ss_dssp TCCEEEECCS--BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--E--EEEEEES
T ss_pred CCeEEEEEcc--CCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--c--EeeEEec
Confidence 7764433321 112211 23588899999998885 3789999999853 2 2223322
Q ss_pred --ccceeEEEEE--eCC--e-EEEee-----CCCcEEEeeCCCCceeeeeEe--cCC----------------CCcEEEE
Q 044557 275 --HTKSILCMAV--VSD--L-VCSGS-----ADKTIRIWRGIDRNYTCLAVL--EGH----------------RGPVKCL 324 (362)
Q Consensus 275 --h~~~v~~~~~--~~~--~-~~s~s-----~D~~i~~W~~~~~~~~~~~~l--~~h----------------~~~v~~~ 324 (362)
.......+.| +++ + ++++- .+++|-+|......+...+.+ ... ......+
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 1223455555 554 3 44444 567887765433333333321 100 1235566
Q ss_pred EeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 325 AAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.++++++ ++.+|.-..+.|.++|+.
T Consensus 327 ~lS~DGr--------fLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 327 DISLDDK--------FLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EECTTSC--------EEEEEETTTTEEEEEECS
T ss_pred EECCCCC--------EEEEEeCCCCEEEEEEec
Confidence 6665543 455666667899999985
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=7.8e-05 Score=66.40 Aligned_cols=265 Identities=10% Similarity=-0.026 Sum_probs=142.0
Q ss_pred cEEEEecCCC----eEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe----------cCCcEEEE
Q 044557 30 KFLYTGSSDN----EVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH----------QDHKIRVW 93 (362)
Q Consensus 30 ~~l~t~s~Dg----~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~----------~dg~i~~w 93 (362)
..+++-..++ +|-+.|..+... ... +..+..+ .+.++++ .++.+. .+++|.+|
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v--~~~-------i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~Vsvi 101 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVT--LGH-------SLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVF 101 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEE--EEE-------EEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred eEEEECCccCCccceEEEEECCCCeE--EEE-------EeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3455555455 788999776431 111 1223344 5666655 477775 37889999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC--CCcEEE--E
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW--DRTIKI--W 169 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--d~~i~i--w 169 (362)
|..+.+.. ..++..... .+. .......++++||+++|+++.. +..|.+ +
T Consensus 102 D~~T~~vv-------~~I~v~~~~---------~~~-----------~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~i 154 (368)
T 1mda_H 102 DPVTFLPI-------ADIELPDAP---------RFS-----------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP 154 (368)
T ss_dssp CTTTCCEE-------EEEEETTSC---------SCC-----------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEET
T ss_pred ECCCCCEE-------EEEECCCcc---------ccc-----------cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEE
Confidence 98765421 111100000 000 0012346789999999998875 467888 8
Q ss_pred ECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCC-----CCCcceeehhhhccccceeEEEEecCC
Q 044557 170 RTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSP-----GNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 170 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~-----~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
|..+ +..+..+.. ..+.|++. +++.+.||++.+.+.++ +.........+.-...+. . ++++
T Consensus 155 D~~t---v~~i~v~~~-----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~ 222 (368)
T 1mda_H 155 GASD---DQLTKSASC-----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP 222 (368)
T ss_dssp TTEE---EEEEECSSC-----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT
T ss_pred chhh---ceEEECCCc-----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC
Confidence 8876 333322211 12234442 55667788888888765 211100000111112333 3 6777
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-------c---cceeEEEEEeCC---eEEEee---C-----CCcEEEe
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRG-------H---TKSILCMAVVSD---LVCSGS---A-----DKTIRIW 301 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-------h---~~~v~~~~~~~~---~~~s~s---~-----D~~i~~W 301 (362)
..++..+. +.|.+.|....... .+..+.- + ......+.++++ ++++.. . +..+.++
T Consensus 223 ~~~~~vs~-~~V~viD~~~~~~~--v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~Vi 299 (368)
T 1mda_H 223 GMLVWAVA-SSILQGDIPAAGAT--MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299 (368)
T ss_dssp TEEEECBS-SCCEEEECCSSCCE--EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred CEEEEEcC-CEEEEEECCCCcce--EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEE
Confidence 77666666 99999998643221 2222211 0 011112456543 344333 2 2345699
Q ss_pred eCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC-CCCcEEEEeccc
Q 044557 302 RGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS-LDCDIKVWQISF 358 (362)
Q Consensus 302 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s-~D~~i~~W~~~~ 358 (362)
|... .+.++.+.... ..++++|++++. +++++.. .+++|.++|++.
T Consensus 300 D~~t--~~vv~~i~vg~-~p~gi~~s~Dg~--------~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 300 TASV--GQTSGPISNGH-DSDAIIAAQDGA--------SDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp ESSS--CCEEECCEEEE-EECEEEECCSSS--------CEEEEEETTTTEEEEEESSS
T ss_pred ECCC--CeEEEEEECCC-CcceEEECCCCC--------EEEEEccCCCCeEEEEECCC
Confidence 9643 34455554322 588899987654 3566666 599999999864
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00038 Score=58.27 Aligned_cols=181 Identities=9% Similarity=0.030 Sum_probs=111.2
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
...+.|+ ++.+..+.+.++.|+++|+++++.+..+ ......-..+++..+.-+.+.-.++.+.+||..+.+...++..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 4788887 4567777888899999999999887776 3333333456665432244555789999999988754433321
Q ss_pred hhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccc---eeEEEEEeCC-eEEEeeCCCcEEE
Q 044557 225 VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK---SILCMAVVSD-LVCSGSADKTIRI 300 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~s~s~D~~i~~ 300 (362)
...+ ..+++|++.|+.+..+++|.++|.++.+.... + ....+.. .+..+.+... +.+....+..|.+
T Consensus 135 ----~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~-I-~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 135 ----SGEG---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGA-V-QVKLRGQPVELINELECANGVIYANIWHSSDVLE 205 (268)
T ss_dssp ----SSCC---CCEEEETTEEEEECSSSEEEEECTTTCCEEEE-E-ECEETTEECCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred ----CCce---eEEecCCCEEEEECCCCEEEEEcCCCCeEEEE-E-EeCCCCcccccccccEEeCCEEEEEECCCCeEEE
Confidence 1111 23346788888888899999999876432111 1 1112222 2345666544 4555556777777
Q ss_pred eeCCCCceeeeeEecC-------------CCCcEEEEEeeecCCccCCCCCceEEEecC
Q 044557 301 WRGIDRNYTCLAVLEG-------------HRGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~-------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s 346 (362)
-|. ++++.++.+.- -.+-.+.+|+.|+.+ .++++|-
T Consensus 206 IDp--~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~--------rlfVTGK 254 (268)
T 3nok_A 206 IDP--ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG--------RIFMTGK 254 (268)
T ss_dssp ECT--TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC--------CEEEEET
T ss_pred EeC--CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC--------EEEEeCC
Confidence 774 34444544321 113568899977644 4777874
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0085 Score=59.15 Aligned_cols=179 Identities=9% Similarity=0.147 Sum_probs=108.1
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec------cCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN------AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~ 216 (362)
..|.++...++|.+. .|+.++-|..|+..+..... +.. .....|.++...++|.+..|+.++-|..|+..++
T Consensus 310 ~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQ 387 (795)
T ss_dssp SCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTC
T ss_pred CcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCC
Confidence 468899989888755 46777888899865543211 111 1234689999999999999999888999987654
Q ss_pred CCcceeehhh-----hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec--CccceeEEEEEeCC-e
Q 044557 217 NKKHSLVDVL-----ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR--GHTKSILCMAVVSD-L 288 (362)
Q Consensus 217 ~~~~~~~~~~-----~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~-~ 288 (362)
... ...... ......|.++...++|..|..|..++-+..||..++. ........ .....|.++...++ .
T Consensus 388 ~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~ 464 (795)
T 4a2l_A 388 RFT-SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ--VENFNQRNSQLVNENVYAILPDGEGN 464 (795)
T ss_dssp CEE-EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC--EEEECTTTSCCSCSCEEEEEECSSSC
T ss_pred cEE-EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc--EEEeecCCCCcCCCeeEEEEECCCCC
Confidence 321 111000 0123568889888888867778877779999876532 22211100 12346788877643 4
Q ss_pred EEEeeCCCcEEEeeCCCCceeeeeEe----cCCCCcEEEEEee
Q 044557 289 VCSGSADKTIRIWRGIDRNYTCLAVL----EGHRGPVKCLAAA 327 (362)
Q Consensus 289 ~~s~s~D~~i~~W~~~~~~~~~~~~l----~~h~~~v~~~~~~ 327 (362)
+..|+. +.+.+|+............ .-....|.++...
T Consensus 465 lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 465 LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence 444555 4577887543333222111 1123567777654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.002 Score=62.31 Aligned_cols=275 Identities=15% Similarity=0.136 Sum_probs=142.0
Q ss_pred eEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEec------CCcEEEEecCCC
Q 044557 25 LALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQ------DHKIRVWKINNQ 98 (362)
Q Consensus 25 l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~------dg~i~~w~~~~~ 98 (362)
+.+.+..++.++.|+.|..+|..+.............. .........+..+.++.+.. ++.|..+|.+++
T Consensus 113 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~----~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG 188 (668)
T 1kv9_A 113 VALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK----PYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTG 188 (668)
T ss_dssp CEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS----SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred eEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC----cceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCC
Confidence 34456678888899999999987754322211100000 00001111233556666643 588999998876
Q ss_pred CCCcccceeeeeccCCC--chhh-hhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc----------
Q 044557 99 EPDHQKYTRLATLPTLG--DRAI-KLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT---------- 165 (362)
Q Consensus 99 ~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~---------- 165 (362)
+....... ....+... .... ..........++. ...+......++++|+...++.++.++.
T Consensus 189 ~~~W~~~~-~~~~p~~~~~~~~~~~~~~~~~g~~~w~-----~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~ 262 (668)
T 1kv9_A 189 KLAWRFYT-VPGDPALPYEHPELREAAKTWQGDQYWK-----LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPG 262 (668)
T ss_dssp CEEEEEES-SCCCTTSCCSSHHHHHHHTTCCSSCHHH-----HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred cEEEEecc-cCCCCCccccccccccccccCCccceee-----eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCC
Confidence 63211100 00000000 0000 0000000000000 0012222345778888888888887763
Q ss_pred ---------EEEEECCCceEEEeeecc-Cc-------ccEEEEEEcCCCc----EEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 166 ---------IKIWRTSDFKCLESITNA-HD-------DAINAVALSDDGD----VYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 166 ---------i~iwd~~~~~~~~~~~~~-h~-------~~v~~v~~~~~~~----~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
|..+|.++++.+-.+... |. .+.....+..+|+ ++.++.+|.+.++|..+++.......
T Consensus 263 ~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 342 (668)
T 1kv9_A 263 GGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKF 342 (668)
T ss_dssp CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred CCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccc
Confidence 999999999877655433 21 2222222223553 77888999999999988864311100
Q ss_pred h-------hh-ccccc------------------------eeEEEEecCCCEEEEE------------------------
Q 044557 225 V-------LE-RHNSG------------------------INALALSCDGSVLYSG------------------------ 248 (362)
Q Consensus 225 ~-------~~-~h~~~------------------------v~~i~~s~~~~~l~s~------------------------ 248 (362)
. +. ....+ -..++++|+...++..
T Consensus 343 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g 422 (668)
T 1kv9_A 343 GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTA 422 (668)
T ss_dssp SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCS
T ss_pred cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccC
Confidence 0 00 00000 0126778877766642
Q ss_pred ------------cCCCcEEEEeccCCCCcEEEEEeecCccce-eEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 249 ------------ACDRSIIVWEKEEDDGNILVVGALRGHTKS-ILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 249 ------------~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
..+|.|+.||+.+++.... .+.+... -..+...+++++.++.|+.++.||.. .++.+..+.
T Consensus 423 ~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~----~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~--tG~~l~~~~ 496 (668)
T 1kv9_A 423 AGFADATDVPAAVVSGALLAWDPVKQKAAWK----VPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD--KGEALWQFE 496 (668)
T ss_dssp SCGGGCCCCCGGGCEEEEEEEETTTTEEEEE----EEESSSCCCCEEEETTTEEEEECTTSEEEEEETT--TCCEEEEEE
T ss_pred ccccccCCCCCCCccceEEEEeCCCCcEEEE----ccCCCCCcCceeEeCCCEEEEECCcccchhhhhh--cChhheEec
Confidence 1347899999876542211 1111111 12344456788889999999999953 344555544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0022 Score=53.08 Aligned_cols=197 Identities=17% Similarity=0.197 Sum_probs=116.2
Q ss_pred eeccceeeecccCcc--ceeeeEecCc-EEEEecCC--CeEEEeecCCCCcccceeeeccceeEEeecc-eeEEEEEcCc
Q 044557 6 VVDHHCLTTLKGHNS--YVSSLALAGK-FLYTGSSD--NEVRSWDCNTFSSELDQEFLSNNNIVAVGKG-AVKSLVVLAD 79 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~--~V~~l~~~~~-~l~t~s~D--g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~ 79 (362)
....+.++++ .|.. ....|.|+++ +..+.+.+ ..|++.|+.+......... ... -...+...++
T Consensus 6 ~~~~~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l---------~~~~fgeGi~~~~~ 75 (243)
T 3mbr_X 6 TQGYRVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEV---------PPPYFGAGIVAWRD 75 (243)
T ss_dssp BCCEEEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEEC---------CTTCCEEEEEEETT
T ss_pred ccceEEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeC---------CCCcceeEEEEeCC
Confidence 3445566677 6654 4568888754 55666665 4899999887542211111 111 1123445567
Q ss_pred eeEEEe-cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE
Q 044557 80 KLFSAH-QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 80 ~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
+|+... .++.+.+||.++.+. +..++.. . ....+.+++..|+
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~-------~~ti~~~----------------------------~--~Gwglt~dg~~L~ 118 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTP-------RARFRYP----------------------------G--EGWALTSDDSHLY 118 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEE-------EEEEECS----------------------------S--CCCEEEECSSCEE
T ss_pred EEEEEEeeCCEEEEEECCcCcE-------EEEEeCC----------------------------C--CceEEeeCCCEEE
Confidence 776654 578899999865431 1111110 0 1123345677677
Q ss_pred EEECCCcEEEEECCCceEEEeeecc-Cc---ccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcceeeh-hhh-----
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNA-HD---DAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVD-VLE----- 227 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~-h~---~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~~~~-~~~----- 227 (362)
.+..++.|.++|.++.+.+..+... +. ..++.+.+. +|++++.. .+..|.+.|..+++....+.- .+.
T Consensus 119 vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~ 197 (243)
T 3mbr_X 119 MSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA 197 (243)
T ss_dssp EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS
T ss_pred EECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc
Confidence 6667889999999999887776532 11 234555555 67766554 577999999988864333211 010
Q ss_pred ---ccccceeEEEEecCCCEEEEEcC
Q 044557 228 ---RHNSGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 228 ---~h~~~v~~i~~s~~~~~l~s~~~ 250 (362)
....-.+.|+++|+++.|+..|.
T Consensus 198 ~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 198 LTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ccCCcCCceEEEEEcCCCCEEEEECC
Confidence 01124578999998887776664
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00019 Score=70.44 Aligned_cols=199 Identities=13% Similarity=0.097 Sum_probs=105.8
Q ss_pred ceeEEEEe-cCCCEEEEEE-CCC----cEEEEECCCc-eEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-----CeEEE
Q 044557 144 AVSALALT-KDETLLYSVS-WDR----TIKIWRTSDF-KCLESITNAHDDAINAVALSDDGD-VYTGSAD-----KKIKV 210 (362)
Q Consensus 144 ~v~~~~~~-~~~~~l~s~s-~d~----~i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-----g~i~i 210 (362)
.+...+|+ |||++||-+. .+| .|+++|+.++ +.+.... ......++|+|+|+ |+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 46678999 9999777443 333 5999999988 6322110 11123578999996 5544443 25777
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC---CCcEEEEeccCCCCcE--EEEEeecCccceeEEEEEe
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC---DRSIIVWEKEEDDGNI--LVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~---d~~i~~wd~~~~~~~~--~~~~~~~~h~~~v~~~~~~ 285 (362)
+++.++.....++... ........+.|+|||++|+..+. ...|.++|+..+.... ..+ ..+......+..+.
T Consensus 252 ~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l--~~~~~~~~~s~~~~ 328 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV--RPREKGVRYDVQMH 328 (751)
T ss_dssp EETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES--SCCCTTCCEEEEEE
T ss_pred EECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe--ecCCCCceEEEeee
Confidence 8876543221222111 12223567889999998886653 3467888887643222 221 22233444555533
Q ss_pred -CC-eEEEeeCC--CcEEEeeCCCCceeeeeE-ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 286 -SD-LVCSGSAD--KTIRIWRGIDRNYTCLAV-LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 286 -~~-~~~s~s~D--~~i~~W~~~~~~~~~~~~-l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
++ +++....+ +..+||............ +..|...+.--.+.+. .+.++++...|+..+||-+
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--------~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--------SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--------SSEEEEEEEETTEEEEEEE
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--------CCEEEEEEEeCCEEEEEEE
Confidence 44 44444444 445555421111011223 3344443322223322 2357788888887666644
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.019 Score=56.65 Aligned_cols=269 Identities=11% Similarity=0.130 Sum_probs=147.8
Q ss_pred cceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCCcEEEEecCC
Q 044557 20 SYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDHKIRVWKINN 97 (362)
Q Consensus 20 ~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg~i~~w~~~~ 97 (362)
..|.++..+ ...|..|+.++-|.+|+...... . .+......-......|.++....+ .|..|+.++-|..|+...
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF--K-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSS--E-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc--e-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC
Confidence 567788775 33566677778888887543211 0 000000000011335667766543 588888887788887654
Q ss_pred CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEE
Q 044557 98 QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCL 177 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 177 (362)
... ......+... ...-....|.++...++++.|..|+.++-|.+||..+++..
T Consensus 387 ~~~-----~~~~~~~~~~---------------------~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~ 440 (795)
T 4a2l_A 387 QRF-----TSYTLQEDES---------------------ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE 440 (795)
T ss_dssp CCE-----EEECCC---------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred CcE-----EEEecCCCCc---------------------ccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE
Confidence 321 1100000000 00001246788888888885666788788999998876543
Q ss_pred Eeeec----cCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh----hccccceeEEEEecCCCEEEEEc
Q 044557 178 ESITN----AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL----ERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 178 ~~~~~----~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~----~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
. +.. .....|.++...++|.+..|+.+ -+.+|+..++... ..... ......|.++...++|...+...
T Consensus 441 ~-~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 516 (795)
T 4a2l_A 441 N-FNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQRSFT--TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE 516 (795)
T ss_dssp E-ECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTTEEE--ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred E-eecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCCeEE--EccccccccccCCceEEEEEECCCCCEEEEeC
Confidence 3 221 13457899998888998888774 4778887654211 11100 11235688898888887665544
Q ss_pred CCCcEEEEeccCCCCcEEEEEe----ecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCC-CCcEEE
Q 044557 250 CDRSIIVWEKEEDDGNILVVGA----LRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGH-RGPVKC 323 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h-~~~v~~ 323 (362)
+-+..|+..+.. . .... .......|.++..+.+ .+..++.. .+..|+.............|- ...|.+
T Consensus 517 --~Gl~~~~~~~~~--~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~ 590 (795)
T 4a2l_A 517 --EGLSVFKQEGLD--I-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYG 590 (795)
T ss_dssp --SCEEEEEEETTE--E-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEE
T ss_pred --CceEEEeCCCCe--E-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEE
Confidence 458888876432 1 1110 0112346788877643 44444444 677787544333322222222 235776
Q ss_pred EEee
Q 044557 324 LAAA 327 (362)
Q Consensus 324 ~~~~ 327 (362)
+...
T Consensus 591 i~~d 594 (795)
T 4a2l_A 591 ILED 594 (795)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6553
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.015 Score=54.93 Aligned_cols=160 Identities=12% Similarity=0.032 Sum_probs=91.3
Q ss_pred EEEecCCCEEEEEECC----------------CcEEEEECCCceEEEeeecc-C--------cccEEEEEEcCCCc----
Q 044557 148 LALTKDETLLYSVSWD----------------RTIKIWRTSDFKCLESITNA-H--------DDAINAVALSDDGD---- 198 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d----------------~~i~iwd~~~~~~~~~~~~~-h--------~~~v~~v~~~~~~~---- 198 (362)
+++.++...++.++.+ +.|..+|.++++.+-.++.. | ..++. +....+|+
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL 318 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence 4566666666666532 25899999998876555432 1 12221 22223563
Q ss_pred EEEEeCCCeEEEEeCCCCCCcceeehhh--------h-ccccce--------------------------eEEEEecCCC
Q 044557 199 VYTGSADKKIKVWRRSPGNKKHSLVDVL--------E-RHNSGI--------------------------NALALSCDGS 243 (362)
Q Consensus 199 ~~s~~~dg~i~iw~~~~~~~~~~~~~~~--------~-~h~~~v--------------------------~~i~~s~~~~ 243 (362)
++.++.+|.+.++|..+++........- . ....++ ..++++|++.
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 5678889999999998886432221000 0 000011 2467888887
Q ss_pred EEEEEc-------------------------------------CCCcEEEEeccCCCCcEEEEEeecCccceeE--EEEE
Q 044557 244 VLYSGA-------------------------------------CDRSIIVWEKEEDDGNILVVGALRGHTKSIL--CMAV 284 (362)
Q Consensus 244 ~l~s~~-------------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~--~~~~ 284 (362)
.++... .++.|..||..+++.... . ... ..+. .+..
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~-~-~~~---~~~~~~~~~t 473 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWT-K-WEK---FAAWGGTLYT 473 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEE-E-EES---SCCCSBCEEE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEE-e-cCC---CCccceeEEE
Confidence 777654 347888888876542221 1 111 1111 1223
Q ss_pred eCCeEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 285 VSDLVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 285 ~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
.++.+..++.|+.++.||.. +++.+..+.
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~--tG~~lw~~~ 502 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNK--DGKELWNFK 502 (571)
T ss_dssp TTTEEEEECTTSEEEEEETT--TCCEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECC--CCCEEEEEe
Confidence 35677779999999999953 455565554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0075 Score=52.38 Aligned_cols=190 Identities=13% Similarity=0.093 Sum_probs=106.5
Q ss_pred ceeEEEEec-CCCEEEEEECCCcEEEEECCCceEEEeeec---c-CcccEEEEEEcC-CCcEEEEeC-------------
Q 044557 144 AVSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESITN---A-HDDAINAVALSD-DGDVYTGSA------------- 204 (362)
Q Consensus 144 ~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~-h~~~v~~v~~~~-~~~~~s~~~------------- 204 (362)
.+..+++.+ +++ |+.+...+.|..+|..+++. ..+.. . .......+++.+ +|.++.+..
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 467888997 555 55555556688888775532 22211 1 112467899999 898665443
Q ss_pred -----CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCCC-CcEEEEEeecCccc
Q 044557 205 -----DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEEDD-GNILVVGALRGHTK 277 (362)
Q Consensus 205 -----dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~~-~~~~~~~~~~~h~~ 277 (362)
++.|..||..++... .... .-...+.|+++|+|+.|+.+ ...+.|..|++.... ........+.+
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~-~~~~----~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g--- 230 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETT-LLLK----ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN--- 230 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEE-EEEE----EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS---
T ss_pred cccCCCceEEEEeCCCCEEE-Eecc----CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC---
Confidence 367888887554311 1111 11234678999999876655 566889999986421 12222222222
Q ss_pred eeEEEEEeCC--eEEEeeC----------CCcEEEeeCCCCceeeeeEecCC----CCcEEEEEeeecCCccCCCCCceE
Q 044557 278 SILCMAVVSD--LVCSGSA----------DKTIRIWRGIDRNYTCLAVLEGH----RGPVKCLAAAIDNDRCDSSDTSYL 341 (362)
Q Consensus 278 ~v~~~~~~~~--~~~s~s~----------D~~i~~W~~~~~~~~~~~~l~~h----~~~v~~~~~~~~~~~~~~~~~~~~ 341 (362)
...++++++ +.++... .+.|..++.. .+.+..+... -..+..+++. .+.+
T Consensus 231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~---G~~~~~~~~~~g~~~~~~~~~~~~----------~g~L 296 (322)
T 2fp8_A 231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF---GNILEVIPLPPPFAGEHFEQIQEH----------DGLL 296 (322)
T ss_dssp -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT---SCEEEEEECCTTTTTSCCCEEEEE----------TTEE
T ss_pred -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC---CCEEEEEECCCCCccccceEEEEe----------CCEE
Confidence 455666543 4444433 3556666632 3334333322 2345555441 2356
Q ss_pred EEecCCCCcEEEEecc
Q 044557 342 VCSGSLDCDIKVWQIS 357 (362)
Q Consensus 342 l~s~s~D~~i~~W~~~ 357 (362)
.++....+.|..+++.
T Consensus 297 ~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 297 YIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEECSSCSEEEEEEC-
T ss_pred EEeecCCCceEEEecc
Confidence 6676677889888874
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0029 Score=55.08 Aligned_cols=154 Identities=10% Similarity=0.114 Sum_probs=93.2
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc-------------------CcccEEEEEEcC-CCcEEEEe
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA-------------------HDDAINAVALSD-DGDVYTGS 203 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-------------------h~~~v~~v~~~~-~~~~~s~~ 203 (362)
...++++++++++++++..++.|..|+..+.+... +... ....+..+++.+ ++.++.+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 45678889999878888889999999987654321 2100 012478899997 78888776
Q ss_pred CCCeEEEEeCCCCCCcceeehhhhc-cccceeEEEEec-CCCEEEEEcC-----------------CCcEEEEeccCCCC
Q 044557 204 ADKKIKVWRRSPGNKKHSLVDVLER-HNSGINALALSC-DGSVLYSGAC-----------------DRSIIVWEKEEDDG 264 (362)
Q Consensus 204 ~dg~i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~-~~~~l~s~~~-----------------d~~i~~wd~~~~~~ 264 (362)
..+.|..+|..++.. ..+.....+ .......+++.+ +|...++-.. ++.|..||.....
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~- 176 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE- 176 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-
Confidence 666688888664321 112111111 123467899999 8877666432 3667778765322
Q ss_pred cEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCC
Q 044557 265 NILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 265 ~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~ 304 (362)
..... ........++++++ ++++-+..+.|..++..
T Consensus 177 -~~~~~---~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~ 215 (322)
T 2fp8_A 177 -TTLLL---KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLE 215 (322)
T ss_dssp -EEEEE---EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred -EEEec---cCCccCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 11111 11122345677654 44555667888888754
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0064 Score=58.77 Aligned_cols=203 Identities=11% Similarity=0.087 Sum_probs=107.6
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEee--cceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVG--KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
.+..++.++.++.|.-+|..+....+.............. ......+.+..+.++.++.|+.|..+|..+++.....
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~- 143 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQ- 143 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEE-
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeee-
Confidence 4566777778899998998765432211111000000000 0001223445678999999999999998876532110
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC------CCcEEEEECCCceEEEe
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW------DRTIKIWRTSDFKCLES 179 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~ 179 (362)
...... . ... ....++ + .++. ++.+.. ++.|..+|.++++.+-.
T Consensus 144 ----~~~~~~-~---------~~~----------~~~~P~--v---~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 144 ----QTTDPA-K---------PYS----------ITGAPR--V---VKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp ----ECSCTT-S---------SCB----------CCSCCE--E---ETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ----ccCCCC-C---------cce----------ecCCCE--E---ECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 000000 0 000 000011 1 1333 333332 58999999999987655
Q ss_pred eeccCc------------------------------ccEEEEEEcCCC-cEEEEeCCC-------------------eEE
Q 044557 180 ITNAHD------------------------------DAINAVALSDDG-DVYTGSADK-------------------KIK 209 (362)
Q Consensus 180 ~~~~h~------------------------------~~v~~v~~~~~~-~~~s~~~dg-------------------~i~ 209 (362)
+..... .....+++.|+. .++.+..++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 432100 001135677654 466666665 388
Q ss_pred EEeCCCCCCcceeehhhhccc-------cceeEEEEecCCC---EEEEEcCCCcEEEEeccCCC
Q 044557 210 VWRRSPGNKKHSLVDVLERHN-------SGINALALSCDGS---VLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~~~h~-------~~v~~i~~s~~~~---~l~s~~~d~~i~~wd~~~~~ 263 (362)
-+|..+++..-... ...|. .+.....+..+|+ .++.++.+|.++++|..+++
T Consensus 274 AlD~~tG~~~W~~~--~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQ--VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EECTTTCCEEEEEE--SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred EEcCCCCceeeEee--cCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 89998886443221 11121 2333333444775 68999999999999987654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0014 Score=59.44 Aligned_cols=109 Identities=14% Similarity=-0.011 Sum_probs=76.3
Q ss_pred ecCCCEEEEEECC-----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe----------CCCeEEEEeCC
Q 044557 151 TKDETLLYSVSWD-----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS----------ADKKIKVWRRS 214 (362)
Q Consensus 151 ~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~----------~dg~i~iw~~~ 214 (362)
.++++.+++.... +.|.++|..+++.+..+..+. .+ .++++|+|+ ++.+. .++.|.++|..
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 3566766666553 699999999999988876543 34 899999997 55554 46789999998
Q ss_pred CCCCcceeehh-hhc--cccceeEEEEecCCCEEEEEcC--CCcEEEEeccCC
Q 044557 215 PGNKKHSLVDV-LER--HNSGINALALSCDGSVLYSGAC--DRSIIVWEKEED 262 (362)
Q Consensus 215 ~~~~~~~~~~~-~~~--h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~ 262 (362)
+.+....+.-. ... .......+.|+|||++|+.+.. ++.|.+.|..+.
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~ 210 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK 210 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence 87643332110 000 0123456889999999999874 578999998764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.041 Score=52.25 Aligned_cols=72 Identities=13% Similarity=0.027 Sum_probs=47.5
Q ss_pred EEEEecCCCEEEEEECCC----------------cEEEEECCCceEEEeeeccCc---------ccEEEEEEc-CCC---
Q 044557 147 ALALTKDETLLYSVSWDR----------------TIKIWRTSDFKCLESITNAHD---------DAINAVALS-DDG--- 197 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~----------------~i~iwd~~~~~~~~~~~~~h~---------~~v~~v~~~-~~~--- 197 (362)
.+++.++...++.+..++ .|..+|.++++.+-.++..+. .++. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 345667777777776653 789999999987665554332 1221 2222 456
Q ss_pred c-EEEEeCCCeEEEEeCCCCCCc
Q 044557 198 D-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 198 ~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
. ++.++.+|.+.++|..+++..
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEECCCcEEEEEECCCCCEe
Confidence 3 556889999999999888643
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.011 Score=52.40 Aligned_cols=157 Identities=9% Similarity=0.004 Sum_probs=88.3
Q ss_pred EEEEEECCCcEEEEECCC-----ceEEE----eeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 156 LLYSVSWDRTIKIWRTSD-----FKCLE----SITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~-----~~~~~----~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
.+++.+.|+.+.+.++++ ++... .+. ....+. ++.+++.++..+. +.|.+.|...... +....+
T Consensus 177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~-vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~--~v~~~~ 249 (368)
T 1mda_H 177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN-CSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA--TMKAAI 249 (368)
T ss_dssp EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC-BCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC--EEECCC
T ss_pred EEEEEcCCCCEEEEECccccccCCeEEEEeeeeee-CCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc--eEEEEE
Confidence 344556677777777765 33221 011 112233 3444455665556 8999999864321 111110
Q ss_pred ----------hccccceeEEEEecCCCEEEEEcC---------CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC
Q 044557 227 ----------ERHNSGINALALSCDGSVLYSGAC---------DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 227 ----------~~h~~~v~~i~~s~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (362)
.....+...++++||+++++.+.. ++.+.++|+.+.+ .+..+.... ....+.++++
T Consensus 250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~----vv~~i~vg~-~p~gi~~s~D 324 (368)
T 1mda_H 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ----TSGPISNGH-DSDAIIAAQD 324 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC----EEECCEEEE-EECEEEECCS
T ss_pred EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe----EEEEEECCC-CcceEEECCC
Confidence 001122233789999999887643 2356699998643 233443222 4677888754
Q ss_pred ---eEEEee-CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 288 ---LVCSGS-ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 288 ---~~~s~s-~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
++++.. .++.|.++|.. +.+.++++.-.. ..+.+++.
T Consensus 325 g~~l~va~~~~~~~VsVID~~--t~kvv~~I~vg~-~P~~i~~~ 365 (368)
T 1mda_H 325 GASDNYANSAGTEVLDIYDAA--SDQDQSSVELDK-GPESLSVQ 365 (368)
T ss_dssp SSCEEEEEETTTTEEEEEESS--SCEEEEECCCCS-CCCEEECC
T ss_pred CCEEEEEccCCCCeEEEEECC--CCcEEEEEECCC-CCCEEEee
Confidence 567777 69999999964 456677775433 23445543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.033 Score=53.67 Aligned_cols=162 Identities=12% Similarity=0.059 Sum_probs=78.6
Q ss_pred EEEEecCCCEEEEEE-CC-----CcEEEEECCCceEEEee----eccCcccEEEEEEcCCCc-EEEEeCC---------C
Q 044557 147 ALALTKDETLLYSVS-WD-----RTIKIWRTSDFKCLESI----TNAHDDAINAVALSDDGD-VYTGSAD---------K 206 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s-~d-----~~i~iwd~~~~~~~~~~----~~~h~~~v~~v~~~~~~~-~~s~~~d---------g 206 (362)
++++.+++++++.|+ .+ ..+.+||..+.+....- ....... ....+..++. ++.++.| .
T Consensus 291 s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~ 369 (656)
T 1k3i_A 291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPST 369 (656)
T ss_dssp EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSS
T ss_pred ceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCcc
Confidence 344557889888888 44 57999999876533210 0000000 0011123333 3444333 4
Q ss_pred eEEEEeCCCCCCcceeehhhhc------cccceeEEEEec-CCCEEEEEcCCC-----------cEEEEeccCCCCcEEE
Q 044557 207 KIKVWRRSPGNKKHSLVDVLER------HNSGINALALSC-DGSVLYSGACDR-----------SIIVWEKEEDDGNILV 268 (362)
Q Consensus 207 ~i~iw~~~~~~~~~~~~~~~~~------h~~~v~~i~~s~-~~~~l~s~~~d~-----------~i~~wd~~~~~~~~~~ 268 (362)
.+..||..+..-.... ..... ....-.++.+.. +++.++.||.++ .|.+||..+.. ...
T Consensus 370 ~v~~yd~~~~~w~~~~-~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~ 446 (656)
T 1k3i_A 370 AMNWYYTSGSGDVKSA-GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP--NTV 446 (656)
T ss_dssp EEEEEECSTTCEEEEE-EECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC--EEE
T ss_pred ceeeeecCCcceeecC-CccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC--eeE
Confidence 5778887654311111 00000 011123444443 777888888543 56777765432 222
Q ss_pred EE--eecCccceeEEEEE-eCCeEEEeeCC-----------CcEEEeeCCCCceeeee
Q 044557 269 VG--ALRGHTKSILCMAV-VSDLVCSGSAD-----------KTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 269 ~~--~~~~h~~~v~~~~~-~~~~~~s~s~D-----------~~i~~W~~~~~~~~~~~ 312 (362)
+. .+........++.. .+.+++.|+.+ ..+.+||.....+..+.
T Consensus 447 ~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 447 FASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp ECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred EccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 21 22111111122333 45578888754 46888986555554444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.029 Score=46.87 Aligned_cols=187 Identities=13% Similarity=0.146 Sum_probs=113.5
Q ss_pred cCceeEEEEecCCCEEE-EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEE-eCCCeEEEEeCCCCCCc
Q 044557 142 VDAVSALALTKDETLLY-SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTG-SADKKIKVWRRSPGNKK 219 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~-~~dg~i~iw~~~~~~~~ 219 (362)
.+.+..++++|++..|+ +...++.|...|.. ++.++.+...-......|++.+++.++.+ -.++.+.++++......
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 35688999999876554 46778889999988 77777664333346788999888886544 35678888887654321
Q ss_pred c--eeeh-hh--hccccceeEEEEecCCCEEEEEcCCCcEEEEeccC--CCCcEEEEEe--e--cCccceeEEEEEeCC-
Q 044557 220 H--SLVD-VL--ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE--DDGNILVVGA--L--RGHTKSILCMAVVSD- 287 (362)
Q Consensus 220 ~--~~~~-~~--~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~--~--~~h~~~v~~~~~~~~- 287 (362)
. .... .+ ...+...-.|+|.|+++.|+++.......+|.... ......+... + ..+...+..+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence 1 1111 01 12355678999999998888887766656665541 1111222211 0 012234567778653
Q ss_pred --eEEEeeCCCcEEEeeCCCCceeeeeEec-CC------CCcEEEEEeeecC
Q 044557 288 --LVCSGSADKTIRIWRGIDRNYTCLAVLE-GH------RGPVKCLAAAIDN 330 (362)
Q Consensus 288 --~~~s~s~D~~i~~W~~~~~~~~~~~~l~-~h------~~~v~~~~~~~~~ 330 (362)
+++...+.+.+-..|...+ ......|. |. -..-..++|.+++
T Consensus 185 g~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G 235 (255)
T 3qqz_A 185 NTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASG 235 (255)
T ss_dssp TEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred CeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence 6777777888888885332 22223343 21 1256788887654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.035 Score=46.57 Aligned_cols=174 Identities=11% Similarity=0.051 Sum_probs=100.5
Q ss_pred ceeEEEEecCCCEEEEE-ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEEEEeC---CCeEEEEeCCCCCC
Q 044557 144 AVSALALTKDETLLYSV-SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVYTGSA---DKKIKVWRRSPGNK 218 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~~---dg~i~iw~~~~~~~ 218 (362)
....++++|++..|+.+ ...+.|.+++...... ..+..........+++.|+ +.++.+.. .+.|..++.+.. .
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~ 157 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-N 157 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-C
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-C
Confidence 45788999876555544 5567999999865332 2222112245688999984 66655443 468888887532 2
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADK 296 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~ 296 (362)
...+.. ..-.....++++|++..|+.+ ...+.|..++..... ...+ ..+ ......++...+ ++++....+
T Consensus 158 ~~~~~~---~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~--~~~-~~~P~gi~~d~~~lyva~~~~~ 229 (267)
T 1npe_A 158 RRILAQ---DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG--RRKV--LEG-LQYPFAVTSYGKNLYYTDWKTN 229 (267)
T ss_dssp CEEEEC---TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE--EEEE--EEC-CCSEEEEEEETTEEEEEETTTT
T ss_pred cEEEEE---CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc--eEEE--ecC-CCCceEEEEeCCEEEEEECCCC
Confidence 222211 112346789999987766555 456789999986421 1111 111 122345666655 455555668
Q ss_pred cEEEeeCCCCceeeeeEecCC-CCcEEEEEeeec
Q 044557 297 TIRIWRGIDRNYTCLAVLEGH-RGPVKCLAAAID 329 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~~l~~h-~~~v~~~~~~~~ 329 (362)
.|..++.. .++.+..+... ......+++.|+
T Consensus 230 ~v~~~d~~--~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 230 SVIAMDLA--ISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEEETT--TTEEEEEECCSSCCCCCCEEEECS
T ss_pred eEEEEeCC--CCCceEEEccccccccceeeecCc
Confidence 88888843 34445555422 224566666654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.082 Score=50.05 Aligned_cols=71 Identities=13% Similarity=0.039 Sum_probs=47.4
Q ss_pred EEEEecCCCEEEEEEC--------------------C----CcEEEEECCCceEEEeeecc-Cc--------ccEEEEEE
Q 044557 147 ALALTKDETLLYSVSW--------------------D----RTIKIWRTSDFKCLESITNA-HD--------DAINAVAL 193 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~--------------------d----~~i~iwd~~~~~~~~~~~~~-h~--------~~v~~v~~ 193 (362)
.++++|+..+++.+.. | +.|..+|..+++.+-.++.. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4567787777777663 2 58999999999877665432 21 1221 122
Q ss_pred c-CCC----cEEEEeCCCeEEEEeCCCCCC
Q 044557 194 S-DDG----DVYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 194 ~-~~~----~~~s~~~dg~i~iw~~~~~~~ 218 (362)
. .+| .++.++.+|.+.++|.++++.
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 1 355 266788999999999988764
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.012 Score=55.04 Aligned_cols=193 Identities=14% Similarity=0.132 Sum_probs=113.6
Q ss_pred ecCCCEEEEEEC-CCcEEEEECCCceEEEeeeccCcccEEEEEE-c-CCCc-EEEEe------------------CCCeE
Q 044557 151 TKDETLLYSVSW-DRTIKIWRTSDFKCLESITNAHDDAINAVAL-S-DDGD-VYTGS------------------ADKKI 208 (362)
Q Consensus 151 ~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~-~-~~~~-~~s~~------------------~dg~i 208 (362)
.+||++|+.... +.+|.+.|+.+.++...+..........+++ . |++. ++.++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 358888777665 4579999999999887554444456788887 4 7776 55542 34578
Q ss_pred EEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC---------------cEEEEeccC-------CC---
Q 044557 209 KVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR---------------SIIVWEKEE-------DD--- 263 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~---------------~i~~wd~~~-------~~--- 263 (362)
.+.|.++.+...++ .--. .-..++++|||+++++.+.+. .|.+.+... ++
T Consensus 178 tvID~~t~~v~~qI----~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 178 TAVDADKWEVAWQV----LVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEETTTTEEEEEE----EESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred EEEECCCCeEEEEE----EeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 88888765322221 1101 234578999999999888664 244444211 00
Q ss_pred -CcEEEEEeec--C--------ccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCc----------eeeeeEecCCCC
Q 044557 264 -GNILVVGALR--G--------HTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRN----------YTCLAVLEGHRG 319 (362)
Q Consensus 264 -~~~~~~~~~~--~--------h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~----------~~~~~~l~~h~~ 319 (362)
....++-.-. + -....-++.++++ .++++..+.+|.++|..... ...+..+. -..
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~ 331 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGL 331 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCS
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCC
Confidence 0011111000 0 0112234566655 57778889999999964210 01222332 123
Q ss_pred cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 320 PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
....++|++++ +..++--.|+.|-+||++.
T Consensus 332 gP~h~aF~~dG---------~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 332 GPLHTAFDGRG---------NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CEEEEEECTTS---------EEEEEETTTTEEEEEEHHH
T ss_pred CcceEEECCCC---------eEEEEEecCCcEEEEEhhH
Confidence 46778887654 3455678899999999853
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.053 Score=45.47 Aligned_cols=192 Identities=11% Similarity=0.041 Sum_probs=111.4
Q ss_pred ceeEEEEecCCCEEEEE-ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEE-EEeCCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDETLLYSV-SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVY-TGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~-s~~~dg~i~iw~~~~~~~~~ 220 (362)
.+..+++++++..|+.+ ..++.|..++.........+. ........+++.++ +.++ +-...+.|.+++.+... ..
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~ 114 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RR 114 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE-CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EE
Confidence 45788999976655544 457899999987654332221 22245788999985 4554 44567899999986432 22
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcC---CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGAC---DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSA 294 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~ 294 (362)
.+.. ........++++|++..|+.+.. .+.|..++...... ..+. .........+++++ + ++++-..
T Consensus 115 ~~~~---~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--~~~~--~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 115 VLFD---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILA--QDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp EEEC---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEE--CTTCSCEEEEEEETTTTEEEEEETT
T ss_pred EEEE---CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--EEEE--ECCCCCCcEEEEcCCCCEEEEEECC
Confidence 2211 11134578999997776665554 36788887753221 1221 11223456777764 3 5567777
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+.|..++... ......+.+ ......+++ ++ +.+.++....+.|..+|..
T Consensus 188 ~~~I~~~~~~g--~~~~~~~~~-~~~P~gi~~--d~--------~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 188 THRAECLNPAQ--PGRRKVLEG-LQYPFAVTS--YG--------KNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp TTEEEEEETTE--EEEEEEEEC-CCSEEEEEE--ET--------TEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEecCC--CceEEEecC-CCCceEEEE--eC--------CEEEEEECCCCeEEEEeCC
Confidence 78899998532 222222222 122345543 22 2455555556778888764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0077 Score=58.07 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=44.0
Q ss_pred EEEEecCCCEEEEEEC-CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-CC-----CeEEEEeCCCC
Q 044557 147 ALALTKDETLLYSVSW-DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS-AD-----KKIKVWRRSPG 216 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~d-----g~i~iw~~~~~ 216 (362)
++++.+++++++.|+. +..+.+||..+.+....-.......-.+++..++++ ++.|+ .+ ..+.+||..+.
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 4667789999999884 468999998876543321111111123455666777 45566 34 57899998764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.07 Score=46.42 Aligned_cols=191 Identities=8% Similarity=-0.012 Sum_probs=98.1
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
+..+.+.+++..++.+ .++.|.. ....++....+...+...+..+++.+++.++..+.+|.+..-+ +.+....+...
T Consensus 124 ~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~-d~gG~tW~~~~ 200 (327)
T 2xbg_A 124 PRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTW-EPGQTAWEPHN 200 (327)
T ss_dssp EEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEE-CTTCSSCEEEE
T ss_pred eEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEe-CCCCCceeECC
Confidence 3456666666666554 4565422 1122333333333455678899999988877766666554432 11111111111
Q ss_pred hhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec----CccceeEEEEEeC-CeEEEeeCCCcEE
Q 044557 225 VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR----GHTKSILCMAVVS-DLVCSGSADKTIR 299 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~----~h~~~v~~~~~~~-~~~~s~s~D~~i~ 299 (362)
......+..+++.+++..++ ++.+|.++.++... +. ....+. .+...+.++.+.+ ..+..++.++.|.
T Consensus 201 --~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~--G~--tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~ 273 (327)
T 2xbg_A 201 --RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDN--SE--NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL 273 (327)
T ss_dssp --CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTE--EE--EECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE
T ss_pred --CCCCCccceeEECCCCCEEE-EeCCceEEEecCCC--CC--eeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEE
Confidence 12345678899999887654 45578777663211 11 111111 1223467777753 3444445577773
Q ss_pred EeeCC-CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 300 IWRGI-DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 300 ~W~~~-~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+... ...+..+....++...+.++.|.+++ . ++.++.+|.|.-++-
T Consensus 274 -~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~---------~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 274 -CSQDGGQTWQQDVDVKKVPSNFYKILFFSPD---------Q-GFILGQKGILLRYVT 320 (327)
T ss_dssp -EESSTTSSCEECGGGTTSSSCCCEEEEEETT---------E-EEEECSTTEEEEECC
T ss_pred -EeCCCCcccEEcCccCCCCCCeEEEEEECCC---------c-eEEEcCCceEEEEcC
Confidence 3211 23343332222344567788886321 2 445567898766653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.069 Score=45.85 Aligned_cols=156 Identities=15% Similarity=0.112 Sum_probs=88.2
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe--CCC-eEEEEeCCCCCCc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS--ADK-KIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~--~dg-~i~iw~~~~~~~~ 219 (362)
.....++++++++++++-..++.|..||.... ....+. ....+..+++.++|+++.+. .++ .|..++..++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 34678899999997777667899999998754 323232 23467889999999866554 223 4666676555421
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe------ecCccceeEEEEEeCC-eEEEe
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA------LRGHTKSILCMAVVSD-LVCSG 292 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~h~~~v~~~~~~~~-~~~s~ 292 (362)
.+.. ... ......++..+++..+++-..++.|..+|............. ..+.......+...+. ++++-
T Consensus 109 -~~~~-~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d 185 (306)
T 2p4o_A 109 -TLLT-LPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN 185 (306)
T ss_dssp -EEEE-CTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE
T ss_pred -EEEe-CCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEe
Confidence 1111 111 112234444555555555556888888886532111111100 0011112234455554 56677
Q ss_pred eCCCcEEEeeCC
Q 044557 293 SADKTIRIWRGI 304 (362)
Q Consensus 293 s~D~~i~~W~~~ 304 (362)
+..+.|..++..
T Consensus 186 ~~~~~I~~~~~~ 197 (306)
T 2p4o_A 186 TEKMLLLRIPVD 197 (306)
T ss_dssp TTTTEEEEEEBC
T ss_pred CCCCEEEEEEeC
Confidence 778889999864
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.043 Score=49.06 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=93.8
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceEEEeeeccC---cccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcce------
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH---DDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHS------ 221 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~------ 221 (362)
..++..++.+- ++.||.-++......+.+...+ ...+..+..+|+|.+++...+..|.|-.+-.+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 45666666554 5888888877433333333221 2357789999999988888888999988763321111
Q ss_pred ---e-ehhhh----ccccceeEEEEec---CCCEEEEEcCCCcEEEEeccCCCCcEEEEEe------ecCccceeEEEEE
Q 044557 222 ---L-VDVLE----RHNSGINALALSC---DGSVLYSGACDRSIIVWEKEEDDGNILVVGA------LRGHTKSILCMAV 284 (362)
Q Consensus 222 ---~-~~~~~----~h~~~v~~i~~s~---~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~h~~~v~~~~~ 284 (362)
. ...+. ....+|..+.|+| .+..|++=..|++||+||+.........+.. .......|.+++|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 0 00111 1256799999999 4678999999999999999753322222211 1122356788889
Q ss_pred eCC----eEEEeeCCCcEEE
Q 044557 285 VSD----LVCSGSADKTIRI 300 (362)
Q Consensus 285 ~~~----~~~s~s~D~~i~~ 300 (362)
.++ ++++.+..|-|.-
T Consensus 188 g~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEE
T ss_pred cCCCcEEEEEecCCCCCEEE
Confidence 765 4556667777753
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.18 Score=49.55 Aligned_cols=159 Identities=9% Similarity=0.076 Sum_probs=94.0
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeee-ccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcce
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT-NAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
..|.++...+++++.+ |+.++-|..++..+++...... ......|.++...++|.+..|+. +-+..|+..++....
T Consensus 407 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~- 483 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIH- 483 (781)
T ss_dssp SBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCE-
T ss_pred cceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEe-
Confidence 5688888888887655 6777788899987765433211 11345788998888898888877 568888876653221
Q ss_pred eehhh--hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCC-eEEEeeCCCc
Q 044557 222 LVDVL--ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSD-LVCSGSADKT 297 (362)
Q Consensus 222 ~~~~~--~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~s~s~D~~ 297 (362)
..... ......|.++...++|...+ |..++-+..|+.... .........+ ....|.++....+ .+..++.+|-
T Consensus 484 ~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Gl 560 (781)
T 3v9f_A 484 HYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ--LVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGL 560 (781)
T ss_dssp EECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCC--EEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEE
T ss_pred cccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC--eEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCc
Confidence 11100 01135688898888877555 444344777876532 2222111111 1245778877543 4444555555
Q ss_pred EEEeeCCCCc
Q 044557 298 IRIWRGIDRN 307 (362)
Q Consensus 298 i~~W~~~~~~ 307 (362)
|..|+.....
T Consensus 561 v~~~d~~~~~ 570 (781)
T 3v9f_A 561 VCFPSARNFD 570 (781)
T ss_dssp EEESCTTTCC
T ss_pred eEEECCCCCc
Confidence 4788754433
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.086 Score=51.62 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=81.5
Q ss_pred eEEEEecCCCEEEEEECC-----CcEEEEECCCceE--EEeeeccCcccEEEEEEcCCCc-EEEEe---CCCeEEEEeCC
Q 044557 146 SALALTKDETLLYSVSWD-----RTIKIWRTSDFKC--LESITNAHDDAINAVALSDDGD-VYTGS---ADKKIKVWRRS 214 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~--~~~~~~~h~~~v~~v~~~~~~~-~~s~~---~dg~i~iw~~~ 214 (362)
..++|+||++.|+-...| ..|.++++.++.. ...+...+......+.|+|+|+ |+..+ ....|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 356799999877766655 3578888876532 1122222334566789999997 44322 23468888887
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC--C--cEEEEeccCCCCcEE-EEEeecCccceeEEEEEeCC-e
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD--R--SIIVWEKEEDDGNIL-VVGALRGHTKSILCMAVVSD-L 288 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d--~--~i~~wd~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~-~ 288 (362)
++.....+............++.|+.++.+++....+ + .|..+++........ ++. ......+..+.+.++ +
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--~~~~~~l~~~~~~~~~l 381 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--HSEDVFMESIAVRSNYL 381 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--CCSSEEEEEEEECSSEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--CCCCcEEEEEEEECCEE
Confidence 6532110011122233444555554444444454444 3 455566543211111 111 111124556666655 5
Q ss_pred EEEeeCCCcEEEee
Q 044557 289 VCSGSADKTIRIWR 302 (362)
Q Consensus 289 ~~s~s~D~~i~~W~ 302 (362)
+++...|+..++|-
T Consensus 382 v~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 382 VVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEEeCCEEEEEE
Confidence 67777888776663
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.25 Score=48.56 Aligned_cols=278 Identities=11% Similarity=0.102 Sum_probs=141.0
Q ss_pred cceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccc-eeEEeecceeEEEEEcC-ceeEEEecCCcEEEEecC
Q 044557 20 SYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNN-NIVAVGKGAVKSLVVLA-DKLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 20 ~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~-~~l~s~~~dg~i~~w~~~ 96 (362)
..|.+|..+ ...|..|+.. -+.+||..+.... .+.... .........|.++.... +.|..++..+-|.+++..
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~---~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFT---NFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEE---C-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETT
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEE---EEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCC
Confidence 457777764 2234444444 6778886542210 000000 00011234566776644 457778775667888875
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceE
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 176 (362)
..............+.... ... .-....|.++...+++.+. .|+.++-|..++......
T Consensus 287 ~~~~~~~~~~~f~~~~~~~----------~~~----------~l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~ 345 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGD----------NNY----------SLSNASARYIFQDSFNNIW-IGTWGGGINFISNAPPTF 345 (781)
T ss_dssp CC---------CEEECBCS----------STT----------SBSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSC
T ss_pred CCeeeeeeccccccccCCC----------CCC----------CCCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcc
Confidence 4321100000000000000 000 0123467888888888754 567778888888765432
Q ss_pred EEee--------eccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE
Q 044557 177 LESI--------TNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 177 ~~~~--------~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
.... .......|.+++..++|.+..|+.++-|..|+..++... ............|.++...++|.. ..|
T Consensus 346 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~l-Wig 423 (781)
T 3v9f_A 346 HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAI-YNKENRELLSNSVLCSLKDSEGNL-WFG 423 (781)
T ss_dssp EEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEE-CC-----CCCSBEEEEEECTTSCE-EEE
T ss_pred eeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEE-EccCCCCCCCcceEEEEECCCCCE-EEE
Confidence 2110 011234689999888899999887777888887543211 010001123456888888777664 446
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEec---CCCCcEEEE
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLE---GHRGPVKCL 324 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~---~h~~~v~~~ 324 (362)
..++-+..++..+. .........-....|.++....+ .+..|+. +.+..++............. .....|.++
T Consensus 424 t~~~Gl~~~~~~~~--~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 500 (781)
T 3v9f_A 424 TYLGNISYYNTRLK--KFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI 500 (781)
T ss_dssp ETTEEEEEECSSSC--EEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE
T ss_pred eccCCEEEEcCCCC--cEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEE
Confidence 66667888886542 12111100112356788877643 5555555 56778875433332221111 113567777
Q ss_pred Eee
Q 044557 325 AAA 327 (362)
Q Consensus 325 ~~~ 327 (362)
...
T Consensus 501 ~~d 503 (781)
T 3v9f_A 501 AQD 503 (781)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.18 Score=45.73 Aligned_cols=113 Identities=10% Similarity=0.108 Sum_probs=65.8
Q ss_pred CceeEEEEecCCCEEEEEEC-CC----cEEEEECCCceEE--EeeeccCcccEEEEEEcC-CCcEEEE-eCCCeEEEEeC
Q 044557 143 DAVSALALTKDETLLYSVSW-DR----TIKIWRTSDFKCL--ESITNAHDDAINAVALSD-DGDVYTG-SADKKIKVWRR 213 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~-d~----~i~iwd~~~~~~~--~~~~~~h~~~v~~v~~~~-~~~~~s~-~~dg~i~iw~~ 213 (362)
.....++++++++.|+.+.. ++ .+.+.+. .+... ..+. .......+++.| ++.++.+ ..++.|..++.
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence 34678999999996666554 22 2333332 22111 1121 112345788998 7776544 46789999998
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccC
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEE 261 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~ 261 (362)
...... .+. ... .......++|+|+|++|+ +-...+.|..++...
T Consensus 256 ~~~~~~-~~~-~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 256 TTQETT-PLF-TIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TTTEEE-EEE-ECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCcEE-EEE-EcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 754211 111 111 113456899999999555 445677898887653
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.072 Score=46.34 Aligned_cols=154 Identities=9% Similarity=0.111 Sum_probs=89.1
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEEC--CCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCc
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRT--SDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~ 219 (362)
...+..+.+.|++.+++.+...+..+-+|- .+++.+. ......+..+++.+++.++.++.+|.+.+.+.+.+. .
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~---~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~-t 237 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN---RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSE-N 237 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE---CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEE-E
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC---CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCC-e
Confidence 346788999999888876654444444442 3344432 234567888999999998888888988776422121 0
Q ss_pred ceeehhh-hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEEEeeCCCc
Q 044557 220 HSLVDVL-ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVCSGSADKT 297 (362)
Q Consensus 220 ~~~~~~~-~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~D~~ 297 (362)
....... ..+...+.++++.+++..++++. ++.| ++....+. ....+.........+.++.+. ++.++.++.+|.
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~-tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~ 314 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ-TWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGI 314 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS-SCEECGGGTTSSSCCCEEEEEETTEEEEECSTTE
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc-ccEEcCccCCCCCCeEEEEEECCCceEEEcCCce
Confidence 0001000 01223578888988777666554 6767 34433322 222211111223456777774 557778888898
Q ss_pred EEEee
Q 044557 298 IRIWR 302 (362)
Q Consensus 298 i~~W~ 302 (362)
|.-++
T Consensus 315 i~~~~ 319 (327)
T 2xbg_A 315 LLRYV 319 (327)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 76665
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.2 Score=43.77 Aligned_cols=195 Identities=15% Similarity=0.165 Sum_probs=113.5
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC----Cc---EE--EEeC--CCeEEEEeCCCCCCcce
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD----GD---VY--TGSA--DKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~----~~---~~--s~~~--dg~i~iw~~~~~~~~~~ 221 (362)
...+++....++-+.+||+ +++.++.+.. +.++.|.+-|+ |+ ++ +.-. +++|.+|++........
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 3455666677889999999 7777776642 34555555442 21 33 3334 58999997743322111
Q ss_pred eehhh--h-ccc-cceeEEEE--ecC-CC-EEEEEcCCCcEEEEeccCC-C--CcEEEEEeecCccceeEEEEEeC--Ce
Q 044557 222 LVDVL--E-RHN-SGINALAL--SCD-GS-VLYSGACDRSIIVWEKEED-D--GNILVVGALRGHTKSILCMAVVS--DL 288 (362)
Q Consensus 222 ~~~~~--~-~h~-~~v~~i~~--s~~-~~-~l~s~~~d~~i~~wd~~~~-~--~~~~~~~~~~~h~~~v~~~~~~~--~~ 288 (362)
.+... . ... ..+..+++ +|. +. +++....+|.+..|++... . .....+..+.-- ..+-.+...+ ..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCe
Confidence 11110 0 011 34555666 664 43 7889999999999998532 1 223344454432 3455566654 48
Q ss_pred EEEeeCCCcEEEeeCCCC---ceeeeeEe-cCCC-CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 289 VCSGSADKTIRIWRGIDR---NYTCLAVL-EGHR-GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 289 ~~s~s~D~~i~~W~~~~~---~~~~~~~l-~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|..+-+|..|-.++.... ..+.+..+ .+|- ..+..+++.+..+ ..+++|+|.=.+.+.-+||.+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~-----g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD-----GKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG-----GCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC-----CCEEEEEEcCCCCEEEEEECC
Confidence 889999976544443222 23445444 2332 3688888864321 234677777577899999985
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0025 Score=59.66 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=69.2
Q ss_pred ceeEEEEecCCCEEEEEE-CCCcEEEEECCCce------------EEEeeeccCcccEEEEEEcCCCcE-EEEeCCCeEE
Q 044557 144 AVSALALTKDETLLYSVS-WDRTIKIWRTSDFK------------CLESITNAHDDAINAVALSDDGDV-YTGSADKKIK 209 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~------------~~~~~~~~h~~~v~~v~~~~~~~~-~s~~~dg~i~ 209 (362)
..-++.++|||+++++++ .+.+|.++|+.+.+ ....+. -....+.++|+|+|.+ ++.-.|++|.
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQVV 355 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CCCCcceEEECCCCeEEEEEecCCcEE
Confidence 456789999999877665 67899999998653 233332 2345788999999973 4666899999
Q ss_pred EEeCCCC------CCcceeehhhhccccce-----eEEEEecCCCEEEEEcC
Q 044557 210 VWRRSPG------NKKHSLVDVLERHNSGI-----NALALSCDGSVLYSGAC 250 (362)
Q Consensus 210 iw~~~~~------~~~~~~~~~~~~h~~~v-----~~i~~s~~~~~l~s~~~ 250 (362)
+||++.+ +.....+..+..|-.+- ..+.++|||++|+++..
T Consensus 356 kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 356 KWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9998762 11122333333333221 22345799999998853
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.31 Score=44.18 Aligned_cols=152 Identities=7% Similarity=0.051 Sum_probs=90.3
Q ss_pred CceeEEEEec-CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-C----eEEEEeCCC
Q 044557 143 DAVSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-K----KIKVWRRSP 215 (362)
Q Consensus 143 ~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-g----~i~iw~~~~ 215 (362)
.....++++| ++..|+.+...+.|+.+|+....... +.. .......+++++++. ++.+... + .+.+++..
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~- 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE- 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-Eec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-
Confidence 3567889998 45566666655899999998765433 322 344578999999987 6665542 1 33334432
Q ss_pred CCCcceeehhhhccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEE
Q 044557 216 GNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCS 291 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s 291 (362)
+..... ..+.. ......++++| +|..+++-..++.|..++.... ....+..... ......+++++ + ++++
T Consensus 214 g~~~~~--~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~--~~~~~~~~~~-~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 214 SGFKVI--TELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ--ETTPLFTIQD-SGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp GTSCSE--EEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT--EEEEEEECSS-SSCCEEEEECTTSSEEEEE
T ss_pred Cceeee--eeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC--cEEEEEEcCC-CCcceeEEEcCCCCEEEEE
Confidence 221100 01111 22356788999 6666666667788999987642 2212222222 23356777765 3 5666
Q ss_pred eeCCCcEEEeeC
Q 044557 292 GSADKTIRIWRG 303 (362)
Q Consensus 292 ~s~D~~i~~W~~ 303 (362)
-...+.|..++.
T Consensus 288 d~~~~~I~~~~~ 299 (430)
T 3tc9_A 288 VVNQHYILRSDY 299 (430)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCCEEEEEeC
Confidence 667788888764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.38 Score=41.63 Aligned_cols=116 Identities=11% Similarity=0.094 Sum_probs=75.6
Q ss_pred eeEEEE---ecCCCEEEEEE-------------CCCcEEEEECC---CceEEEeeecc------------CcccEEEEEE
Q 044557 145 VSALAL---TKDETLLYSVS-------------WDRTIKIWRTS---DFKCLESITNA------------HDDAINAVAL 193 (362)
Q Consensus 145 v~~~~~---~~~~~~l~s~s-------------~d~~i~iwd~~---~~~~~~~~~~~------------h~~~v~~v~~ 193 (362)
+..+.+ .|+++++++.. .+..|..+|+. +++.+...... -......++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 367888 68877777543 26889999998 66654433211 1124788999
Q ss_pred cCCCc-EEEEeCC-CeEEEEeCCCCCCcceeehhh--hccccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 194 SDDGD-VYTGSAD-KKIKVWRRSPGNKKHSLVDVL--ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 194 ~~~~~-~~s~~~d-g~i~iw~~~~~~~~~~~~~~~--~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
.++|. +++++.- +.|...+.+.. ......... .......+.|++.|+|..|++...++.+..+|+..
T Consensus 145 D~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 145 DRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 99998 5567766 77666655422 111111000 11123467899999999999887799999999874
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.67 Score=43.66 Aligned_cols=72 Identities=10% Similarity=0.101 Sum_probs=39.9
Q ss_pred cCcEEEEecC-CCeEEEeec-CCCCcccceeeeccceeEE--eecceeEEEEEcCceeEEEecCCcEEEEecCCCC
Q 044557 28 AGKFLYTGSS-DNEVRSWDC-NTFSSELDQEFLSNNNIVA--VGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQE 99 (362)
Q Consensus 28 ~~~~l~t~s~-Dg~i~vWd~-~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~ 99 (362)
.+..++.++. ++.|.-.|. .+................. ........+.+.++.++.++.|+.|..+|..+++
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGK 136 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCC
Confidence 3556666666 888888897 6654322211111000000 0000011234457789999999999999987765
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.57 Score=42.42 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=62.5
Q ss_pred CceeEEEEecCCCEEEEEECC---Cc-EEEEECCCc-eEEEeeeccCcccEEEEEEcC-CCcEEEE-eCCCeEEEEeCCC
Q 044557 143 DAVSALALTKDETLLYSVSWD---RT-IKIWRTSDF-KCLESITNAHDDAINAVALSD-DGDVYTG-SADKKIKVWRRSP 215 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d---~~-i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~-~~~~~s~-~~dg~i~iw~~~~ 215 (362)
.....++++++++++++-... .. +...+.... .....+. .......+++.| +|.++.+ ..++.|..++..+
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~ 259 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT 259 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC
Confidence 356889999999954443321 11 222222111 1001111 122345678888 7776654 4667899998875
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEecc
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKE 260 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~ 260 (362)
+.....+... . ....-..++|+|+|.+|+.+ ...+.|+.++..
T Consensus 260 g~~~~~~~~~-~-~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 260 GTLTEEEVMM-D-TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CCEEEEEEEC-S-CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CeEEEEEecc-C-CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 5421112111 1 11122469999999955554 456789888765
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.42 Score=40.82 Aligned_cols=177 Identities=16% Similarity=0.023 Sum_probs=94.3
Q ss_pred ceeEEEEecCCCEEEEEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDETLLYSVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~ 220 (362)
.+..+++.++++++++..... .|..++..+++...............++..+++.++... .++.|..+|...+....
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v 152 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI 152 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeE
Confidence 467889999999766654433 466667677664332221222334556666666654444 58888888875431110
Q ss_pred ee-eh-----hhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCC-C-CcEEEEEeecCccceeEEEEEe--CCeE
Q 044557 221 SL-VD-----VLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEED-D-GNILVVGALRGHTKSILCMAVV--SDLV 289 (362)
Q Consensus 221 ~~-~~-----~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~-~-~~~~~~~~~~~h~~~v~~~~~~--~~~~ 289 (362)
.. .. .....-...+.| +|+++.|+.+ ...+.|..|+.... . ......... .....++++ +.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~ 226 (306)
T 2p4o_A 153 WLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLY 226 (306)
T ss_dssp EEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEE
T ss_pred EEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEE
Confidence 00 00 000111123444 7888766655 45778999998641 1 011111111 123345554 3466
Q ss_pred EEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 290 CSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 290 ~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
++....+.|.+++.. .....+..+.......++++|.
T Consensus 227 va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 227 GATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp EECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred EEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence 776777889999843 2222232333233568889886
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.59 Score=42.35 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=86.7
Q ss_pred CceeEEEEecC--CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCC-----eEEEEeCCC
Q 044557 143 DAVSALALTKD--ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADK-----KIKVWRRSP 215 (362)
Q Consensus 143 ~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg-----~i~iw~~~~ 215 (362)
.....++++|+ ...|+.+...+.|+.++..+++..... ........++++++|.++.+...+ .+...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence 34678999984 444555544489999999877654432 233457899999999876655422 233333221
Q ss_pred CCCcceeehhhhccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEE
Q 044557 216 GNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCS 291 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s 291 (362)
........ . .......++++| +|..+++-..++.|+.++...+... ..+... +....-..+++++ + ++++
T Consensus 217 ~~~~~~~~---~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-~~~~~~-~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 217 GFTERLSL---C-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-EEEVMM-DTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TTCCEEEE---E-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-EEEEEC-SCCSSCEEEEECTTSSEEEEE
T ss_pred Ceeccccc---c-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-EEEecc-CCCCCcccEEEeCCCCEEEEE
Confidence 11100111 1 122345688899 6665556666788999987643210 111111 1112223577764 3 5666
Q ss_pred eeCCCcEEEeeC
Q 044557 292 GSADKTIRIWRG 303 (362)
Q Consensus 292 ~s~D~~i~~W~~ 303 (362)
-...+.|+.++.
T Consensus 291 d~~~~~I~~~~~ 302 (433)
T 4hw6_A 291 YNGKHCIYRVDY 302 (433)
T ss_dssp ETTTTEEEEEEB
T ss_pred eCCCCEEEEEeC
Confidence 677788888764
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.093 Score=46.94 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=77.0
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCce------------EEEeeecc-----CcccEEEEEEcCCC----cEEEE
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFK------------CLESITNA-----HDDAINAVALSDDG----DVYTG 202 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~------------~~~~~~~~-----h~~~v~~v~~~~~~----~~~s~ 202 (362)
.+.-+..+|+|++||..+ +..|.|-.+..+. ..+.+..+ ...+|..+.|+|-+ .+++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 455688899999999876 6789998876321 11222222 24679999999965 38899
Q ss_pred eCCCeEEEEeCCCCCCcce-eehh-----hhccccceeEEEEecCCCEEEEEc--CCCcEEEE
Q 044557 203 SADKKIKVWRRSPGNKKHS-LVDV-----LERHNSGINALALSCDGSVLYSGA--CDRSIIVW 257 (362)
Q Consensus 203 ~~dg~i~iw~~~~~~~~~~-~~~~-----~~~h~~~v~~i~~s~~~~~l~s~~--~d~~i~~w 257 (362)
..|++|++||+........ +... +......|.+++|.+++-.|+... ..|.|+..
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999986332221 1110 111225688999999998888855 77888654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.94 Score=38.93 Aligned_cols=196 Identities=15% Similarity=0.033 Sum_probs=106.1
Q ss_pred CceeEEEEecCCCEEE-EEECCCcEEEEECCCc---eEEEeeeccCcccEEEEEEcC-CCcEE-EEeCCCeEEEEeCCCC
Q 044557 143 DAVSALALTKDETLLY-SVSWDRTIKIWRTSDF---KCLESITNAHDDAINAVALSD-DGDVY-TGSADKKIKVWRRSPG 216 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~---~~~~~~~~~h~~~v~~v~~~~-~~~~~-s~~~dg~i~iw~~~~~ 216 (362)
..+..++|++.+..|+ +-..++.|..+++... .....+....-.....+++.+ ++.++ +-...+.|.+++++..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 3467889998665444 4455689999998751 222222211223457888885 45554 5567789999998643
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCC--CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACD--RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCS 291 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s 291 (362)
....+.. ........+++.|.+..|+.+... +.|...++.... ...+. .........+++++ . ++++
T Consensus 110 -~~~~~~~---~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~--~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 110 -KRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLV--TENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp -SEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEE--CSSCSCEEEEEEETTTTEEEEE
T ss_pred -ceEEEEE---CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEEEE--ECCCCCceEEEEeccCCEEEEE
Confidence 2222221 122346789999977766655543 578777765321 22221 11223456777763 3 5566
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
-+..+.|..++........+....+.-....++++. + +.+.++-...+.|...+.
T Consensus 182 D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~--------~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--E--------DKVFWTDIINEAIFSANR 236 (316)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--T--------TEEEEEETTTTEEEEEET
T ss_pred ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--C--------CEEEEEECCCCeEEEEeC
Confidence 666778988886433222222221122335566663 1 234445445556666654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.88 Score=38.51 Aligned_cols=153 Identities=8% Similarity=0.158 Sum_probs=75.0
Q ss_pred CCCEEEEEECC-----CcEEEEECCCce-----EEEeeeccCcccEEEEEEcCCCc-EEEEeCC-----CeEEEEeCCCC
Q 044557 153 DETLLYSVSWD-----RTIKIWRTSDFK-----CLESITNAHDDAINAVALSDDGD-VYTGSAD-----KKIKVWRRSPG 216 (362)
Q Consensus 153 ~~~~l~s~s~d-----~~i~iwd~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-----g~i~iw~~~~~ 216 (362)
++++++.|+.+ ..+.+||..+.+ .+..+.... .. .+++.. +++ ++.|+.+ ..+.+||..+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r-~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRR-GL-AGATTL-GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCC-BS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCc-cc-eeEEEE-CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 45666666654 468899987654 222221111 11 122222 455 4455533 36888887654
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCC-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACD-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCS 291 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s 291 (362)
.- .....+......-.++. .+++.++.||.+ ..+..||..+. ....+..+........++.+.+.+++.
T Consensus 139 ~W--~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~ 212 (301)
T 2vpj_A 139 QW--SMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALLNDHIYVV 212 (301)
T ss_dssp EE--EEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred eE--EECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEECCEEEEE
Confidence 31 11111111111111222 267777777765 45788887653 333333332222222233344446667
Q ss_pred eeCC-----CcEEEeeCCCCceeeeeEe
Q 044557 292 GSAD-----KTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 292 ~s~D-----~~i~~W~~~~~~~~~~~~l 314 (362)
|+.+ ..+.+||.....+..+..+
T Consensus 213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 240 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTDSWTTVTSM 240 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred eCCCCCcccceEEEEeCCCCcEEECCCC
Confidence 7654 4678888766666555433
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.61 E-value=2.4 Score=43.49 Aligned_cols=143 Identities=13% Similarity=0.170 Sum_probs=89.6
Q ss_pred CCEEEEEE----------CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee
Q 044557 154 ETLLYSVS----------WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 154 ~~~l~s~s----------~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
..+|+.|. ..|.|.++++...+..........++|.+++-. +|++++| ...+|++|++...+... .
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~-ig~~l~vy~l~~~~~L~-~- 919 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLAS-INSTVRLYEWTTEKELR-T- 919 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEE-ETTEEEEEEECTTSCEE-E-
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEE-cCCEEEEEECCCCceEE-E-
Confidence 46888876 347899999865443222222346788888744 3565554 45799999986543111 1
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE-eCCeEEEeeCCCcEEEee
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV-VSDLVCSGSADKTIRIWR 302 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~s~s~D~~i~~W~ 302 (362)
.. .+-..|..+.....+.+++.|..-..|.+...+.....+..+. -..+...++++.+ ..+.++.+..+|.+.+.+
T Consensus 920 -~~-~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a-~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~ 996 (1158)
T 3ei3_A 920 -EC-NHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA-RDFNPNWMSAVEILDDDNFLGAENAFNLFVCQ 996 (1158)
T ss_dssp -EE-EECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE-ECCSCBCEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred -Ee-eccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE-eecccccEEEEEEEccCcEEEEcCCCcEEEEe
Confidence 01 1111233444444678999999888887766554444444443 3445667888887 467888899999999886
Q ss_pred C
Q 044557 303 G 303 (362)
Q Consensus 303 ~ 303 (362)
.
T Consensus 997 ~ 997 (1158)
T 3ei3_A 997 K 997 (1158)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.36 E-value=1.1 Score=37.95 Aligned_cols=154 Identities=10% Similarity=0.147 Sum_probs=73.6
Q ss_pred CCCEEEEEECC-----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC-----eEEEEeCCCCCCcce
Q 044557 153 DETLLYSVSWD-----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADK-----KIKVWRRSPGNKKHS 221 (362)
Q Consensus 153 ~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg-----~i~iw~~~~~~~~~~ 221 (362)
++.+++.|+.+ ..+.+||..+.+....-.......-.+++.. +++ ++.|+.++ .+.+||+.+.. -.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNE--WF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTE--EE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCe--Ee
Confidence 55666666654 3588899877653221111111111122222 455 45565443 57788876542 11
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCC-------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeC
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACD-------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSA 294 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~ 294 (362)
....+......-..+. -+++.++.||.+ ..+..||..+. ....+..+........++.+.+.+++.|+.
T Consensus 138 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 213 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVLNNLLYAVGGH 213 (302)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred ecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEECCEEEEECCC
Confidence 1111111111112222 266777777653 34778887653 333333333222222233334446677765
Q ss_pred C-----CcEEEeeCCCCceeeeeE
Q 044557 295 D-----KTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 295 D-----~~i~~W~~~~~~~~~~~~ 313 (362)
+ ..+.+||.....+..+..
T Consensus 214 ~~~~~~~~~~~yd~~~~~W~~~~~ 237 (302)
T 2xn4_A 214 DGPLVRKSVEVYDPTTNAWRQVAD 237 (302)
T ss_dssp SSSSBCCCEEEEETTTTEEEEECC
T ss_pred CCCcccceEEEEeCCCCCEeeCCC
Confidence 4 357788876555655543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.31 E-value=1.2 Score=37.89 Aligned_cols=155 Identities=7% Similarity=0.101 Sum_probs=74.1
Q ss_pred CCCEEEEEECC----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC------CeEEEEeCCCCCCcce
Q 044557 153 DETLLYSVSWD----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD------KKIKVWRRSPGNKKHS 221 (362)
Q Consensus 153 ~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d------g~i~iw~~~~~~~~~~ 221 (362)
++.+++.|+.+ ..+.+||..+.+....-.......-.+++.. +++ ++.|+.+ ..+.+||..+..- .
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W--~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESW--H 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEE--E
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCce--E
Confidence 55666667655 5788899887653221111111111112222 455 4556554 4588888776421 1
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcC---------CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEe
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGAC---------DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSG 292 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~ 292 (362)
....+......-..+. -+++.++.|+. -..+.+||..+. ....+..+......-..+...+.+++.|
T Consensus 132 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~G 207 (306)
T 3ii7_A 132 TKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFVKDKIFAVG 207 (306)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred eCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEECCEEEEEe
Confidence 1111111111111222 36677777764 345788888653 3333333322111122233334466666
Q ss_pred eCC-----CcEEEeeCCCCceeeeeEe
Q 044557 293 SAD-----KTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 293 s~D-----~~i~~W~~~~~~~~~~~~l 314 (362)
+.+ ..+.+||.....+..+..+
T Consensus 208 G~~~~~~~~~~~~yd~~~~~W~~~~~~ 234 (306)
T 3ii7_A 208 GQNGLGGLDNVEYYDIKLNEWKMVSPM 234 (306)
T ss_dssp CEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred CCCCCCCCceEEEeeCCCCcEEECCCC
Confidence 543 3577888666566555433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=1.2 Score=42.29 Aligned_cols=144 Identities=9% Similarity=0.070 Sum_probs=80.8
Q ss_pred EEEEECCCcEEEEECCCceEEEeeeccCc---ccEEE-EEEcCCCcEEEEe------CCCeEEEEeCCCCCCcceeehhh
Q 044557 157 LYSVSWDRTIKIWRTSDFKCLESITNAHD---DAINA-VALSDDGDVYTGS------ADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 157 l~s~s~d~~i~iwd~~~~~~~~~~~~~h~---~~v~~-v~~~~~~~~~s~~------~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
++.++.|+.|.-+|..+++.+-....... ..+.+ -.+ .++.++.++ .+|.|.-+|..+++..-+.....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~ 202 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence 77788899999999999987654432210 01111 011 156666655 38999999999886433221100
Q ss_pred hc--------------------------------ccc-ce-eEEEEecCCCEEEEEcCC----------------CcEEE
Q 044557 227 ER--------------------------------HNS-GI-NALALSCDGSVLYSGACD----------------RSIIV 256 (362)
Q Consensus 227 ~~--------------------------------h~~-~v-~~i~~s~~~~~l~s~~~d----------------~~i~~ 256 (362)
.. +.. .+ ..+++.++...++.+..+ +.|..
T Consensus 203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A 282 (599)
T 1w6s_A 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (599)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence 00 000 01 135667777788877665 37888
Q ss_pred EeccCCCCcEEEEEeecCcc--------ceeEEEEE---eC---CeEEEeeCCCcEEEeeCC
Q 044557 257 WEKEEDDGNILVVGALRGHT--------KSILCMAV---VS---DLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 257 wd~~~~~~~~~~~~~~~~h~--------~~v~~~~~---~~---~~~~s~s~D~~i~~W~~~ 304 (362)
+|..+++.. -......|. ..+. +.. .+ ..++.++.+|.+.+.|..
T Consensus 283 ld~~TG~~~--W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~ 341 (599)
T 1w6s_A 283 RDADTGEAK--FGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRT 341 (599)
T ss_dssp EETTTCCEE--EEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETT
T ss_pred EeCCCCcee--eEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECC
Confidence 888765422 112222221 1122 222 23 357778899999988853
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.2 Score=48.52 Aligned_cols=196 Identities=13% Similarity=0.007 Sum_probs=100.8
Q ss_pred CceeEEEEecCCCEEEEE-ECCCcEEEEECCCc---eEEEeeeccCcccEEEEEEcC-CCcE-EEEeCCCeEEEEeCCCC
Q 044557 143 DAVSALALTKDETLLYSV-SWDRTIKIWRTSDF---KCLESITNAHDDAINAVALSD-DGDV-YTGSADKKIKVWRRSPG 216 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~---~~~~~~~~~h~~~v~~v~~~~-~~~~-~s~~~dg~i~iw~~~~~ 216 (362)
..+..++|++.+..|+.+ ...+.|+.+++... .....+..........+++.+ ++.| ++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 356678898876666554 45578999988751 111111111112345677774 4454 44456788999987643
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcC-C-CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-D-RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCS 291 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d-~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s 291 (362)
. ...++. ........|++.|.+.+|+.+.. . +.|..+++...... .+ ..........|++++ .++++
T Consensus 486 ~-~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~l--~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 K-RKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SL--VTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp C-EEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--EE--SCSSCSSCCCEEECTTTCCEEEE
T ss_pred c-eEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--EE--EeCCCCCccEEEEeccCCEEEEE
Confidence 2 222221 11233567889987666655543 2 67777776532211 11 111122345567763 35666
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
-+..+.|..++........+....+......++++. + ..++++....+.|..++.
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd--~--------~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--E--------DKVFWTDIINEAIFSANR 612 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE--T--------TEEEEECSTTTCEEEEET
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEE--C--------CEEEEEeCCCCeEEEEEc
Confidence 667778888875432222221111111122233332 1 245556666677877764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.1 Score=42.29 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=61.8
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEE------Eeeec-cCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCL------ESITN-AHDDAINAVALSDDGDVYTGSADKKIKVWRRSP 215 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~------~~~~~-~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~ 215 (362)
..+..++|+|++.+.++ .++.+.-.+..+.... ..+-. +-. ...++.|.|+|.|+++ .||.|.-++.-+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence 36679999999886655 5676555554331110 11100 111 1367889999998877 779887776532
Q ss_pred CCCcceeehh---hhc-cccceeEEEEecCCCEEEEEcCCCcEE
Q 044557 216 GNKKHSLVDV---LER-HNSGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 216 ~~~~~~~~~~---~~~-h~~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
... ...+.. +.. -=..+..|.+.|+|.+.+.. |+.++
T Consensus 117 ~~~-~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDT-DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STT-CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCC-CceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 211 111111 000 11467899999999888777 77653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=94.78 E-value=2.1 Score=38.15 Aligned_cols=176 Identities=15% Similarity=0.040 Sum_probs=100.6
Q ss_pred CceeEEEEecC-CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEEEEe--CCCeEEEEeCCCCCC
Q 044557 143 DAVSALALTKD-ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVYTGS--ADKKIKVWRRSPGNK 218 (362)
Q Consensus 143 ~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~--~dg~i~iw~~~~~~~ 218 (362)
.....+++.+. +++.++-...+.|.+.+++.......+. ........+++.|. +.++-.. ..+.|...+++.. .
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~ 236 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-D 236 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-S
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-c
Confidence 34578888874 4455555567889999887654332222 23345789999985 5554433 2468888887533 2
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADK 296 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~ 296 (362)
...+.. ..-...+.|++++++..|+.+. ..+.|..+|+..... . .+....+.......+++..+ ++.+-...+
T Consensus 237 ~~~~~~---~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~-~~~~~~~~l~~P~gl~v~~~~lywtd~~~~ 311 (400)
T 3p5b_L 237 IYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-K-TILEDEKRLAHPFSLAVFEDKVFWTDIINE 311 (400)
T ss_dssp CEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-E-EEEECSSTTSSEEEEEEETTEEEEEESSSC
T ss_pred cEEEEE---CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-E-EEEeCCCCCCCCEEEEEeCCEEEEecCCCC
Confidence 222221 1123467899998887777664 567899998864322 2 22222222233456666655 566777778
Q ss_pred cEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 297 TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
.|..++... +..+..+........++++.
T Consensus 312 ~V~~~~~~~--G~~~~~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 312 AIFSANRLT--GSDVNLLAENLLSPEDMVLF 340 (400)
T ss_dssp SEEEEESSS--CCCCEEEECSCSCEEEEEEE
T ss_pred eEEEEEcCC--CCceEEEecCCCCCceEEEE
Confidence 888776222 22233343333345555443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=94.76 E-value=1.8 Score=37.34 Aligned_cols=156 Identities=8% Similarity=0.129 Sum_probs=94.0
Q ss_pred eEEEEecCCCEEEEEE-CCCcEEEEECCCceEEEeeeccC-------cccEEEEEE---cCCCcEEEEeC----------
Q 044557 146 SALALTKDETLLYSVS-WDRTIKIWRTSDFKCLESITNAH-------DDAINAVAL---SDDGDVYTGSA---------- 204 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~h-------~~~v~~v~~---~~~~~~~s~~~---------- 204 (362)
.++.|++....|+.++ ..++|..|+...+....... .. ...+..+.+ .|+++|+....
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~-~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI-DGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC-TTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec-CCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 4677887666666666 78999999987554333221 21 113578999 57787654322
Q ss_pred ----CCeEEEEeCC---CCCCcceee--hhhhc-------cccceeEEEEecCCCEEEEEcCC-CcEEEEeccCCCCcEE
Q 044557 205 ----DKKIKVWRRS---PGNKKHSLV--DVLER-------HNSGINALALSCDGSVLYSGACD-RSIIVWEKEEDDGNIL 267 (362)
Q Consensus 205 ----dg~i~iw~~~---~~~~~~~~~--~~~~~-------h~~~v~~i~~s~~~~~l~s~~~d-~~i~~wd~~~~~~~~~ 267 (362)
+..|..||+. +++.....- ....+ -......+++.++|+..++++.- +.|...+.... ...
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~--~~~ 172 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK--TVS 172 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC--CEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC--EEe
Confidence 6789999988 555332211 11111 12347899999999999998888 87776665432 221
Q ss_pred EEEe-e--cCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 268 VVGA-L--RGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 268 ~~~~-~--~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
.... . ........-+++.++ .|+....++.+..+|..
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1111 1 011112456777743 55554448999888854
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=94.34 E-value=2.7 Score=37.46 Aligned_cols=196 Identities=14% Similarity=0.033 Sum_probs=106.4
Q ss_pred cCceeEEEEecCCCEEEEE-ECCCcEEEEECCCce---EEEeeeccCcccEEEEEEcC-CCcEE-EEeCCCeEEEEeCCC
Q 044557 142 VDAVSALALTKDETLLYSV-SWDRTIKIWRTSDFK---CLESITNAHDDAINAVALSD-DGDVY-TGSADKKIKVWRRSP 215 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~v~~~~-~~~~~-s~~~dg~i~iw~~~~ 215 (362)
...+..++|++.+..|+-+ ...+.|+.+++.... ....+..........+++.+ .+.|+ +-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 3457889999866655544 456789888886521 11222222334577899987 55554 555678999998764
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEE
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVC 290 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~ 290 (362)
.. ...+.. ..-.....|++.|.+..|+.... .+.|...++.... ...++ .........+++++ . +++
T Consensus 191 ~~-~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~---~~~l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VK-RKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV---TENIQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CS-EEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEE---CSSCSCEEEEEEETTTTEEEE
T ss_pred Cc-eEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEE---ECCCCceEEEEEEeCCCEEEE
Confidence 32 222221 12234678999997776665542 3678888876422 22221 12223456777763 3 455
Q ss_pred EeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 291 SGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 291 s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+=+..+.|...+........+....+.-....++++. ++ .++++-...+.|..++
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~--------~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--ED--------KVFWTDIINEAIFSAN 317 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TT--------EEEEEESSSCSEEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CC--------EEEEecCCCCeEEEEE
Confidence 5566678888886433222222211222334455552 21 3444444445566555
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=94.23 E-value=2.6 Score=36.77 Aligned_cols=113 Identities=15% Similarity=0.327 Sum_probs=71.2
Q ss_pred eEEEE--ecC-CC-EEEEEECCCcEEEEECC-------CceEEEeeeccCcccEEEEEEcCC-CcEEEEeCCCeEEEEeC
Q 044557 146 SALAL--TKD-ET-LLYSVSWDRTIKIWRTS-------DFKCLESITNAHDDAINAVALSDD-GDVYTGSADKKIKVWRR 213 (362)
Q Consensus 146 ~~~~~--~~~-~~-~l~s~s~d~~i~iwd~~-------~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~~dg~i~iw~~ 213 (362)
..+++ +|. ++ ++++...++.+..|++. +.+.++++.. ...+..|...+. +.++.+-+|.-|..++.
T Consensus 131 yGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da 208 (355)
T 3amr_A 131 YGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEYGRLYIAEEDEAIWKFSA 208 (355)
T ss_dssp CCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTTTEEEEEETTTEEEEEEC
T ss_pred eEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCCCeEEEecccceEEEEeC
Confidence 34444 664 43 67788889999999882 3356677654 346778888764 56999999977777775
Q ss_pred CCCC-Ccceeehhhh-c-cccceeEEEE--ecCCC-EEEEEc-CCCcEEEEecc
Q 044557 214 SPGN-KKHSLVDVLE-R-HNSGINALAL--SCDGS-VLYSGA-CDRSIIVWEKE 260 (362)
Q Consensus 214 ~~~~-~~~~~~~~~~-~-h~~~v~~i~~--s~~~~-~l~s~~-~d~~i~~wd~~ 260 (362)
+... ....++.... + -...+..|++ .++++ +|++++ .+++..+||.+
T Consensus 209 ~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 209 EPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp STTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 5332 1112222221 1 1235777777 45655 566555 67789999986
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=94.21 E-value=2.3 Score=36.13 Aligned_cols=153 Identities=13% Similarity=0.168 Sum_probs=72.1
Q ss_pred CCCEEEEEEC----C-----CcEEEEECCCceEEEeeecc-CcccEEEEEEcCCCc-EEEEeCC-----CeEEEEeCCCC
Q 044557 153 DETLLYSVSW----D-----RTIKIWRTSDFKCLESITNA-HDDAINAVALSDDGD-VYTGSAD-----KKIKVWRRSPG 216 (362)
Q Consensus 153 ~~~~l~s~s~----d-----~~i~iwd~~~~~~~~~~~~~-h~~~v~~v~~~~~~~-~~s~~~d-----g~i~iw~~~~~ 216 (362)
++++++.|+. + ..+.+||..+.+....-... ..... +++.. +++ ++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVGVI-DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEEEE-TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEEEE-CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4555555554 2 46888898776532211101 01111 12222 455 4444432 46788887654
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCC-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACD-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCS 291 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s 291 (362)
.- .....+......-..+.+ +++.++.||.+ +.+..||..+. ....+..+........++.+.+.+++.
T Consensus 148 ~W--~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~ 221 (308)
T 1zgk_A 148 EW--HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVLHNCIYAA 221 (308)
T ss_dssp EE--EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred eE--eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEECCEEEEE
Confidence 21 111111111111122222 67777777765 45788887643 233322222211122233334446666
Q ss_pred eeCC-----CcEEEeeCCCCceeeeeE
Q 044557 292 GSAD-----KTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 292 ~s~D-----~~i~~W~~~~~~~~~~~~ 313 (362)
|+.+ ..+.+||.....+..+..
T Consensus 222 GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 222 GGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred eCCCCCCccceEEEEeCCCCcEEECCC
Confidence 6654 458888876666655543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.20 E-value=2.3 Score=36.03 Aligned_cols=156 Identities=8% Similarity=0.073 Sum_probs=76.1
Q ss_pred CCCEEEEEECC------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcE-EEEeC---------CCeEEEEeCCCC
Q 044557 153 DETLLYSVSWD------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDV-YTGSA---------DKKIKVWRRSPG 216 (362)
Q Consensus 153 ~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~s~~~---------dg~i~iw~~~~~ 216 (362)
++++++.|+.+ ..+.+||..+.+....-.......-.+++.. ++++ +.|+. -..+.+||..+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 56667777655 4688999887653221111111111112222 4553 44432 345888888764
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCC-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACD-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCS 291 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s 291 (362)
. -+....+......-..+. -+++.++.||.+ ..+.+||..+. ....+..+........++.+.+.+++.
T Consensus 180 ~--W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~ 253 (306)
T 3ii7_A 180 T--WTELCPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAVGSIVYVL 253 (306)
T ss_dssp E--EEEECCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTT--EEEECCCCSCCBSCCEEEEETTEEEEE
T ss_pred e--EEECCCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCC--cEEECCCCCCCccceeEEEECCEEEEE
Confidence 2 111111111111111222 267777777754 35788887653 233333332222222333344446677
Q ss_pred eeCC-----CcEEEeeCCCCceeeeeEec
Q 044557 292 GSAD-----KTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 292 ~s~D-----~~i~~W~~~~~~~~~~~~l~ 315 (362)
|+.+ ..+.+||.....+..+..+.
T Consensus 254 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 254 AGFQGVGRLGHILEYNTETDKWVANSKVR 282 (306)
T ss_dssp ECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred eCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence 7644 45777887666666555443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.17 E-value=4.7 Score=39.56 Aligned_cols=156 Identities=14% Similarity=0.037 Sum_probs=88.9
Q ss_pred cCceeEEEEecCCCE-EEEEECCCcEEEEECCCce---EEEeeeccCcccEEEEEEcCCC-cE-EEEeCCCeEEEEeCCC
Q 044557 142 VDAVSALALTKDETL-LYSVSWDRTIKIWRTSDFK---CLESITNAHDDAINAVALSDDG-DV-YTGSADKKIKVWRRSP 215 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~v~~~~~~-~~-~s~~~dg~i~iw~~~~ 215 (362)
...+..+++++.... +++-...+.|+.+++.... ....+..........|++.+.+ .| ++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 456778999885554 4454556788888886531 1122222223456678888765 44 4556778999999864
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEE
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVC 290 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~ 290 (362)
. ....++. ..-.....|++.|.+.+|+.... .+.|...++.... ...+ ..........|++++ . +++
T Consensus 503 ~-~~~~l~~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--~~~l--v~~~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 V-KRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSL--VTENIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp S-SEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEE--ECSSCSCEEEEEEETTTTEEEE
T ss_pred C-eEEEEEe---CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc--eEEE--EeCCCCCceEEEEecCCCeEEE
Confidence 3 2222221 12234678999998766665543 2678777775322 2222 122234556777762 3 445
Q ss_pred EeeCCCcEEEeeCCC
Q 044557 291 SGSADKTIRIWRGID 305 (362)
Q Consensus 291 s~s~D~~i~~W~~~~ 305 (362)
+=+..+.|...+...
T Consensus 575 aD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 575 VDSKLHSISSIDVNG 589 (791)
T ss_dssp EETTTTEEEEEETTS
T ss_pred EeCCCCcEEEEecCC
Confidence 545566787777543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=2.8 Score=36.72 Aligned_cols=158 Identities=13% Similarity=0.156 Sum_probs=82.0
Q ss_pred EEEEEcCCCcEEEEe-------------CCCeEEEEeCCCCCCcceeehh----hhccccceeEEEEec--CCC-EEEEE
Q 044557 189 NAVALSDDGDVYTGS-------------ADKKIKVWRRSPGNKKHSLVDV----LERHNSGINALALSC--DGS-VLYSG 248 (362)
Q Consensus 189 ~~v~~~~~~~~~s~~-------------~dg~i~iw~~~~~~~~~~~~~~----~~~h~~~v~~i~~s~--~~~-~l~s~ 248 (362)
..+++.|+|.+++++ .+|.|.++|..+.......+.. +.........|.+.+ ++. +|+.+
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 455566777655544 6899999998743222111111 111122344566555 454 45544
Q ss_pred cC---CCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEEeCC--eEEEee---CC------------CcEEEeeCCCCc
Q 044557 249 AC---DRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAVVSD--LVCSGS---AD------------KTIRIWRGIDRN 307 (362)
Q Consensus 249 ~~---d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~--~~~s~s---~D------------~~i~~W~~~~~~ 307 (362)
.. +.+|.+|++.........+..+.+.. .....+.+.++ +.++.. .| ..=++|......
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~ 212 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 212 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe
Confidence 32 46788888876555555555555432 23456666433 555543 11 122334322221
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+..+...-..-+.++|+|+++ .+.++-+..+.|..|++.
T Consensus 213 ---~~~~~~~l~~pNGia~spDg~--------~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 213 ---VRVVAEGFDFANGINISPDGK--------YVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp ---CEEEEEEESSEEEEEECTTSS--------EEEEEEGGGTEEEEEEEC
T ss_pred ---EEEeecCCcccCcceECCCCC--------EEEEEeCCCCeEEEEEEC
Confidence 222222234568888887654 344555667888888875
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=93.88 E-value=0.36 Score=45.64 Aligned_cols=54 Identities=11% Similarity=0.200 Sum_probs=35.2
Q ss_pred CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 205 DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 205 dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
+|.|.-||+.+++..-+... ..++..-.....+..++.++.|+.++.||.++++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~-----~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKE-----HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEE-----SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEecC-----CCCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 67889999988764332211 1122211222357788889999999999998754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.77 E-value=2.7 Score=35.41 Aligned_cols=145 Identities=10% Similarity=0.109 Sum_probs=68.3
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-----CeEEEEeCCCCCCc-ceeehhhhccccceeEE
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-----KKIKVWRRSPGNKK-HSLVDVLERHNSGINAL 236 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-----g~i~iw~~~~~~~~-~~~~~~~~~h~~~v~~i 236 (362)
..+.+||..+.+....-.......-.+++.. ++. ++.|+.+ ..+.+||..+.... -.....+......-..+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 4688888877653221111111111122222 455 4556544 46888998765400 11111111111111222
Q ss_pred EEecCCCEEEEEcCCC-----cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC-----CcEEEeeCCCC
Q 044557 237 ALSCDGSVLYSGACDR-----SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD-----KTIRIWRGIDR 306 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D-----~~i~~W~~~~~ 306 (362)
. .+++.++.||.++ .+.+||..+. ....+..+......-.++.+.+.+++.|+.+ ..+.+||....
T Consensus 110 ~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 110 T--LGDMIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp E--ETTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred E--ECCEEEEEcccCCCcccceEEEEcCCCC--eEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 2 2677777777543 5778887653 3333433332222222333344466666654 45777886655
Q ss_pred ceeeeeE
Q 044557 307 NYTCLAV 313 (362)
Q Consensus 307 ~~~~~~~ 313 (362)
.+..+..
T Consensus 186 ~W~~~~~ 192 (301)
T 2vpj_A 186 HWTNVTP 192 (301)
T ss_dssp EEEEECC
T ss_pred cEEeCCC
Confidence 5555443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.64 E-value=2.2 Score=37.28 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=64.5
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceE--EEee---eccCcccEEEEEEcCC----CcEEEE---eCCCeEE
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC--LESI---TNAHDDAINAVALSDD----GDVYTG---SADKKIK 209 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~---~~~h~~~v~~v~~~~~----~~~~s~---~~dg~i~ 209 (362)
......|+|.||++++++--..|.|++++...++. +..+ ..........|+++|+ +.++.. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 45678999999999887765589999998665543 2211 1112445789999985 555432 3455666
Q ss_pred EEeCCCCC-------Ccceeehhhh-ccccceeEEEEecCCCEEEEEc
Q 044557 210 VWRRSPGN-------KKHSLVDVLE-RHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 210 iw~~~~~~-------~~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
-|....+. ....+...+. .....-..|+|.|||.+.++-+
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 67665421 1111221111 1111345799999998777754
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=93.61 E-value=3.1 Score=35.59 Aligned_cols=176 Identities=9% Similarity=0.020 Sum_probs=96.4
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEE-EEeCCCeEEEEeCCCC---CCcceeehhhhccccceeEEE
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVY-TGSADKKIKVWRRSPG---NKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~-s~~~dg~i~iw~~~~~---~~~~~~~~~~~~h~~~v~~i~ 237 (362)
...|+..|+...+....+. ....+..++|.+. +.++ +-..++.|..+++... .....+. ...-.....++
T Consensus 9 ~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~---~~~~~~p~gla 83 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SRDIQAPDGLA 83 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE---CSSCSCCCEEE
T ss_pred CCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE---eCCCCCcCEEE
Confidence 4678888888765443332 2345778999875 4554 5556789999988651 1111121 11123457889
Q ss_pred EecCCCEE-EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeCC-CcEEEeeCCCCceeeee
Q 044557 238 LSCDGSVL-YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSAD-KTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 238 ~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~D-~~i~~W~~~~~~~~~~~ 312 (362)
+.+.+..| ++-...+.|.+.++.... ...+. .........+++++ . ++.+.... +.|...+........+
T Consensus 84 vd~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~--~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~- 158 (316)
T 1ijq_A 84 VDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLF--RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL- 158 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSS--EEEEE--ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-
T ss_pred EeecCCeEEEEECCCCEEEEEeCCCCc--eEEEE--ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE-
Confidence 98755555 455677889999876422 22221 12234557777764 3 34444333 5676666433222111
Q ss_pred EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 313 VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 313 ~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
....-.....++++++++ .+.++-+..+.|...++.
T Consensus 159 -~~~~~~~P~gla~d~~~~--------~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 159 -VTENIQWPNGITLDLLSG--------RLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp -ECSSCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETT
T ss_pred -EECCCCCceEEEEeccCC--------EEEEEECCCCeEEEEecC
Confidence 122334677888876543 334444455667777764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.59 E-value=2.9 Score=35.23 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=69.1
Q ss_pred CEEEEEECC----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-----CeEEEEeCCCCCCcceeeh
Q 044557 155 TLLYSVSWD----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-----KKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 155 ~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-----g~i~iw~~~~~~~~~~~~~ 224 (362)
.+++.|+.+ ..+.+||..+.+....-.......-.+++.. ++. ++.|+.+ ..+.+||..+.. -....
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~ 93 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WTSVA 93 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTE--EEEEC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCc--eeeCC
Confidence 344445433 3577888877653221110100001122222 455 4555544 357888876542 11111
Q ss_pred hhhccccceeEEEEecCCCEEEEEcCCC-----cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC----
Q 044557 225 VLERHNSGINALALSCDGSVLYSGACDR-----SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD---- 295 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D---- 295 (362)
.+......-..+. -+++.++.||.++ .+.+||..+. ....+..+........+..+.+.+++.|+.+
T Consensus 94 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCEETTTT
T ss_pred CCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCCCCcccCceEEEECCEEEEEeCCCCCCC
Confidence 1111111112222 2677777787664 4667777643 3333333332222222233344455655542
Q ss_pred ---CcEEEeeCCCCceeeeeE
Q 044557 296 ---KTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 296 ---~~i~~W~~~~~~~~~~~~ 313 (362)
..+.+||.....+..+..
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~ 190 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAE 190 (302)
T ss_dssp EECCCEEEEETTTTEEEEECC
T ss_pred ccccEEEEEeCCCCcEEECCC
Confidence 347778866555555443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.8 Score=37.09 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=59.6
Q ss_pred cEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccc--------eeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 187 AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG--------INALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~--------v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
.+..++|+|+|.|++. .+|++.-.+..+... ...... ... ..++.|.|+|.+.++ .||.|+-++
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~-~~W~~s----~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDN-DNWMGR----AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTT-CCHHHH----CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCc-cccccc----ccEecccccccceEEEECCCCCEEEe--CCCEEEEeC
Confidence 5679999999998887 778765555433211 111111 112 378899999988888 669888776
Q ss_pred ccCCCCcE-----EEEEeecCccceeEEEEEeCC-eEEEeeCCCcEE
Q 044557 259 KEEDDGNI-----LVVGALRGHTKSILCMAVVSD-LVCSGSADKTIR 299 (362)
Q Consensus 259 ~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~ 299 (362)
-.+..... ..++. .+ =+.+..+.+.++ .|.... |+.+.
T Consensus 114 pP~~~~~~Wl~~a~~vg~-~g-w~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGS-GG-WSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp CCCSTTCCHHHHSEEEEC-SS-GGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred CCcCCCCceeccccEecc-CC-CCceEEEEECCCceEEEEe-CCcEE
Confidence 53322111 11110 01 134677888776 455555 77754
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.27 E-value=4.1 Score=36.01 Aligned_cols=192 Identities=12% Similarity=0.027 Sum_probs=106.5
Q ss_pred CceeEEEEecCCCEEE-EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcE-EEEeCCCeEEEEeCCCCCCc
Q 044557 143 DAVSALALTKDETLLY-SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDV-YTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~-~s~~~dg~i~iw~~~~~~~~ 219 (362)
..+..++|++.+..|+ +-...+.|..+++........+. ........+++.+. +.+ ++-...+.|.+.+++... .
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~ 193 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-R 193 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-C
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-e
Confidence 3567889997655444 44567889999987654333222 22234467888864 554 455567789888876432 2
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcC-C-CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeC
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGAC-D-RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSA 294 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d-~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~ 294 (362)
..+. ...-.....|++.|.+..|+.+.. . +.|..+++.... ...+. .........+++++ . ++++-+.
T Consensus 194 ~~l~---~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~---~~~~~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 194 KVLL---WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIA---DTHLFWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EEEE---CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEE---CSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred EEee---cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEE---ECCCCCeeeEEEeCCCCEEEEEECC
Confidence 2221 112234678999997776665543 3 578777775422 21111 11223346677763 3 5566666
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
.+.|..++....... ..+........++++. + +.+.++-...+.|...+
T Consensus 267 ~~~I~~~d~dG~~~~--~~~~~~~~~P~giav~-~---------~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 267 HHVIERANLDGSHRK--AVISQGLPHPFAITVF-E---------DSLYWTDWHTKSINSAN 315 (386)
T ss_dssp TTEEEEECTTSCSCE--EEECSSCSSEEEEEEE-T---------TEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCCeeE--EEEECCCCCceEEEEE-C---------CEEEEeeCCCCeEEEEE
Confidence 778888875432211 1222223345666662 1 13444544555666655
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.20 E-value=3 Score=36.19 Aligned_cols=41 Identities=12% Similarity=0.000 Sum_probs=19.6
Q ss_pred cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC
Q 044557 253 SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD 295 (362)
Q Consensus 253 ~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D 295 (362)
.+.+||..+.. ...+..+......-.++.+.+.+++.|+.+
T Consensus 286 ~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 286 STDIHLWHNGK--WDKSGELSQGRAYGVSLPWNNSLLIIGGET 326 (357)
T ss_dssp CCEEEECC-----CEEEEECSSCCBSSEEEEETTEEEEEEEEC
T ss_pred eEEEEecCCCc--eeeCCCCCCCcccceeEEeCCEEEEEeeeC
Confidence 46788887533 334444443222223344445566666654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=1.4 Score=38.63 Aligned_cols=105 Identities=13% Similarity=0.107 Sum_probs=60.6
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCce-EEEeee--ccCcccEEEEEEcCC----CcEEEEeC----C----Ce
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-CLESIT--NAHDDAINAVALSDD----GDVYTGSA----D----KK 207 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~--~~h~~~v~~v~~~~~----~~~~s~~~----d----g~ 207 (362)
.....++|.|++++++ +..++.|++++. +++ .+..+. .........|+++|+ +.++.+.. + +.
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4568899999998555 456699999973 444 222111 111245789999997 66554432 3 56
Q ss_pred EEEEeCCCCCC----cceeehhhh-ccccceeEEEEecCCCEEEEEc
Q 044557 208 IKVWRRSPGNK----KHSLVDVLE-RHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 208 i~iw~~~~~~~----~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
|..|+...... ...+...+. ........|+|.|||.++++-+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 77777654310 111111111 1111246799999998776644
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.00 E-value=4.5 Score=35.73 Aligned_cols=149 Identities=16% Similarity=0.100 Sum_probs=86.6
Q ss_pred eeEEEEecCCCE-EEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-cEE-EEeCC-CeEEEEeCCCCCCcc
Q 044557 145 VSALALTKDETL-LYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-DVY-TGSAD-KKIKVWRRSPGNKKH 220 (362)
Q Consensus 145 v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~-s~~~d-g~i~iw~~~~~~~~~ 220 (362)
...+++.+.+.. .++-...+.|.+.++...... .+..........+++.|.+ .++ +-... +.|..++++.. ...
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~ 238 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRR 238 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCE
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcE
Confidence 356778875544 445555678888887654322 2222233457889999754 444 44444 78888887543 222
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i 298 (362)
.+.. ..-...+.|+++|++..|+.+ +..+.|..+++.... ...++ .........+++..+ ++++-...+.|
T Consensus 239 ~~~~---~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~---~~~~~~P~giav~~~~ly~td~~~~~V 311 (386)
T 3v65_B 239 IIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVI---SQGLPHPFAITVFEDSLYWTDWHTKSI 311 (386)
T ss_dssp EEEC---SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS-CEEEE---CSSCSSEEEEEEETTEEEEEETTTTEE
T ss_pred EEEE---CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe-eEEEE---ECCCCCceEEEEECCEEEEeeCCCCeE
Confidence 2221 112345789999877766655 456779889876422 22222 112233455666555 56666677778
Q ss_pred EEee
Q 044557 299 RIWR 302 (362)
Q Consensus 299 ~~W~ 302 (362)
..++
T Consensus 312 ~~~~ 315 (386)
T 3v65_B 312 NSAN 315 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7776
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.99 E-value=1.8 Score=37.76 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=60.3
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceE--EEeee--ccCcccEEEEEEcCC----CcEEEEeC-C-----CeE
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC--LESIT--NAHDDAINAVALSDD----GDVYTGSA-D-----KKI 208 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~--~~h~~~v~~v~~~~~----~~~~s~~~-d-----g~i 208 (362)
.....++|.|+++++++ ..++.|++++ +++. +..+. .........++++|+ +.++.+.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45678999999996554 5679999998 3332 22111 111345789999998 55554332 2 677
Q ss_pred EEEeCCCCCC--cceeehhhh---ccccceeEEEEecCCCEEEEEc
Q 044557 209 KVWRRSPGNK--KHSLVDVLE---RHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 209 ~iw~~~~~~~--~~~~~~~~~---~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
..|+...... ...+...+. ........++|.|||..+++-+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 7787764311 111221111 1111236799999997666643
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=92.98 E-value=0.53 Score=45.56 Aligned_cols=152 Identities=16% Similarity=0.079 Sum_probs=83.6
Q ss_pred eeEEEEecCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEEEEe-C-CCeEEEEeCCCCCCcc
Q 044557 145 VSALALTKDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVYTGS-A-DKKIKVWRRSPGNKKH 220 (362)
Q Consensus 145 v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~-~-dg~i~iw~~~~~~~~~ 220 (362)
...+++.+.+ +++++-...+.|.+.++...... .+..........+++.|. +.|+.+. . .+.|.++++... ...
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~ 532 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIY 532 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCC
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-Cee
Confidence 3456777544 44444456688999988754432 222222234567888875 4554433 2 267877776532 222
Q ss_pred eeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i 298 (362)
.+.. ..-...+.|+|+|++..|+ +-+..+.|..+++.... . ..+....+.......+++..+ ++++....+.|
T Consensus 533 ~l~~---~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~-~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V 607 (699)
T 1n7d_A 533 SLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-R-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 607 (699)
T ss_dssp EESC---SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-C-EEECCCSSSCSSCCCCEEETTEEEEECSTTTCE
T ss_pred EEEe---CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-e-EEEEecCCcCCCceEeEEECCEEEEEeCCCCeE
Confidence 2211 1122356799999766555 44566789999886422 2 222221111222344555555 56677777888
Q ss_pred EEeeC
Q 044557 299 RIWRG 303 (362)
Q Consensus 299 ~~W~~ 303 (362)
..++.
T Consensus 608 ~~~d~ 612 (699)
T 1n7d_A 608 FSANR 612 (699)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 88873
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=92.63 E-value=4.5 Score=34.71 Aligned_cols=193 Identities=12% Similarity=0.037 Sum_probs=105.1
Q ss_pred ceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCcE-EEEeCCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGDV-YTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~-~s~~~dg~i~iw~~~~~~~~~ 220 (362)
....++|++.+. ++.+-...+.|..++.........+....-.....+++.+ ++.+ ++-...+.|.+++++... ..
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RK 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EE
Confidence 356788888554 4445456788999988765321111111123456788886 4554 455567899999986432 22
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeCC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSAD 295 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~D 295 (362)
.+.. ........+++.|.+..|+.+.. .+.|...++.... ...++ .........+++++ . ++.+=+..
T Consensus 115 ~l~~---~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~---~~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 115 VLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIII---NSEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EEEC---SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEE---CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEe---CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEE---ECCCCCccEEEEeccCCEEEEEECCC
Confidence 2221 22234578999997766665553 4678777765322 21121 11123346677764 3 55666667
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+.|..++........+ +.+......++++. .+ .++++-...+.|...+.
T Consensus 188 ~~I~~~d~dG~~~~~~--~~~~~~~P~glav~--~~--------~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAV--VKGSLPHPFALTLF--ED--------ILYWTDWSTHSILACNK 236 (318)
T ss_dssp TEEEEEETTSCSCEEE--ECSCCSCEEEEEEE--TT--------EEEEEETTTTEEEEEET
T ss_pred CEEEEEcCCCCceEEE--ecCCCCCceEEEEe--CC--------EEEEEecCCCeEEEEEC
Confidence 8888887543222222 22233445566653 11 23444444455655554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=92.55 E-value=4.3 Score=34.36 Aligned_cols=152 Identities=10% Similarity=0.127 Sum_probs=70.2
Q ss_pred CCCEEEEEECC-----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-----CeEEEEeCCCCCCcce
Q 044557 153 DETLLYSVSWD-----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-----KKIKVWRRSPGNKKHS 221 (362)
Q Consensus 153 ~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-----g~i~iw~~~~~~~~~~ 221 (362)
++++++.|+.+ ..+.+||..+.+....-.......-.+++.. +++ ++.|+.+ ..+.+||+.+.. -.
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~ 197 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNE--WR 197 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE--EE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCe--Ee
Confidence 45666666543 4688889877653221111111111122222 455 4455543 458888876542 11
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCC-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC-
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACD-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD- 295 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D- 295 (362)
....+......-..+.+ +++.++.||.+ ..+.+||..+. ....+..+........++...+.+++.|+.+
T Consensus 198 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 198 MITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE--TWTFVAPMKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred eCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC--cEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence 11111111111222222 67777777765 45888988653 2333322222111122233334466666644
Q ss_pred ----CcEEEeeCCCCceeee
Q 044557 296 ----KTIRIWRGIDRNYTCL 311 (362)
Q Consensus 296 ----~~i~~W~~~~~~~~~~ 311 (362)
..+.+||.....+..+
T Consensus 274 ~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 274 HTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp SCBCCEEEEEETTTTEEEEE
T ss_pred CcccceEEEEcCCCCEEeec
Confidence 3355666544444433
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=92.19 E-value=1.3 Score=38.72 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=58.5
Q ss_pred cCceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeee------ccCcccEEEEEEcCC----CcEEEEe-C-----
Q 044557 142 VDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESIT------NAHDDAINAVALSDD----GDVYTGS-A----- 204 (362)
Q Consensus 142 ~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~------~~h~~~v~~v~~~~~----~~~~s~~-~----- 204 (362)
......|+|.|+++ +++ +...+.|++++.. ++....+. .........++++|+ +.++.+. .
T Consensus 17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp ESSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 34568999999999 554 5568999999854 32211111 112335688999995 6654432 2
Q ss_pred --CCeEEEEeCCCCCC----cceeehhhh---ccccceeEEEEecCCCEEEEEc
Q 044557 205 --DKKIKVWRRSPGNK----KHSLVDVLE---RHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 205 --dg~i~iw~~~~~~~----~~~~~~~~~---~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
...|..|+...... ...+...+. ........|+|.|||.++++-+
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 23566666653321 111111111 0011235699999996655543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=92.11 E-value=2.4 Score=38.61 Aligned_cols=108 Identities=11% Similarity=0.137 Sum_probs=61.0
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceE--EEeeecc-----CcccEEEEEEcC----CCcEEEEeC------
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC--LESITNA-----HDDAINAVALSD----DGDVYTGSA------ 204 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~~-----h~~~v~~v~~~~----~~~~~s~~~------ 204 (362)
......|+|.|+|+++++-...+.|++++..+++. +..+... .......|+|+| ++.|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34567999999999777654435788887654432 2222111 234577999999 455543321
Q ss_pred -------CCeEEEEeCCCCCC----cceeehhhh-ccccceeEEEEecCCCEEEEEc
Q 044557 205 -------DKKIKVWRRSPGNK----KHSLVDVLE-RHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 205 -------dg~i~iw~~~~~~~----~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
...|.-|+...... ...+...+. ........|+|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 23455565543211 111221111 1112367899999998777655
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.42 E-value=6.6 Score=34.09 Aligned_cols=150 Identities=17% Similarity=0.132 Sum_probs=87.6
Q ss_pred ceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEE-EEeCC-CeEEEEeCCCCCCc
Q 044557 144 AVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVY-TGSAD-KKIKVWRRSPGNKK 219 (362)
Q Consensus 144 ~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~-s~~~d-g~i~iw~~~~~~~~ 219 (362)
....+++.+.+. +.++-...+.|.+.++...... .+..........+++.|. +.++ +-... +.|..++++.. ..
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~ 194 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GR 194 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SC
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-Cc
Confidence 346788887554 4455556788999998754322 222223345789999984 5544 44444 78888887643 22
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCc
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKT 297 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~ 297 (362)
..+.. ..-...+.|+++|++..|+.+ ...+.|..+++.... ...++ .........+++..+ ++++-...+.
T Consensus 195 ~~~~~---~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~~~---~~~~~~P~giav~~~~ly~td~~~~~ 267 (349)
T 3v64_C 195 RIIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVI---SQGLPHPFAITVFEDSLYWTDWHTKS 267 (349)
T ss_dssp EESCC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE---CSSCSSEEEEEEETTEEEEEETTTTE
T ss_pred EEEEE---CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEEEE---eCCCCCceEEEEECCEEEEecCCCCe
Confidence 22211 112345789999877766655 456779899876422 22222 112233455665555 5566666777
Q ss_pred EEEee
Q 044557 298 IRIWR 302 (362)
Q Consensus 298 i~~W~ 302 (362)
|...+
T Consensus 268 V~~~~ 272 (349)
T 3v64_C 268 INSAN 272 (349)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77775
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.24 E-value=6.2 Score=33.44 Aligned_cols=155 Identities=10% Similarity=0.090 Sum_probs=71.7
Q ss_pred cCCCEEEEEEC----C-------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC--------CeEEEE
Q 044557 152 KDETLLYSVSW----D-------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD--------KKIKVW 211 (362)
Q Consensus 152 ~~~~~l~s~s~----d-------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d--------g~i~iw 211 (362)
.++++++.|+. + ..+.+||..+.+....-.......-.+++.. +++ ++.|+.+ ..+.+|
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ 122 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCY 122 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEE
Confidence 46677777773 1 1277888877653221110100000112222 455 4455522 458888
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-C-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEe
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-D-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 285 (362)
|..+.. -+....+......-. + ...+++.++.||. + +.+.+||..+. ....+..+........+..+.
T Consensus 123 d~~~~~--W~~~~~~p~~r~~~~-~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~ 196 (315)
T 4asc_A 123 DRLSFK--WGESDPLPYVVYGHT-V-LSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVHD 196 (315)
T ss_dssp ETTTTE--EEECCCCSSCCBSCE-E-EEETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEET
T ss_pred CCCCCc--EeECCCCCCccccee-E-EEECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEEC
Confidence 886542 111111111111111 1 2246677777776 2 45788887653 233332222211112233334
Q ss_pred CCeEEEeeCCC-----cEEEeeCCCCceeeeeE
Q 044557 286 SDLVCSGSADK-----TIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 286 ~~~~~s~s~D~-----~i~~W~~~~~~~~~~~~ 313 (362)
+.+++.|+.++ .+.+||.....+..+..
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 229 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA 229 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence 44666666544 46777765555555543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=90.89 E-value=7.7 Score=33.89 Aligned_cols=153 Identities=8% Similarity=0.054 Sum_probs=85.7
Q ss_pred eeEEEEecCCCEEEEEE------------CCCcEEEEECCCc--eEEE-eeecc----CcccEEEEEEcC--CC--cEEE
Q 044557 145 VSALALTKDETLLYSVS------------WDRTIKIWRTSDF--KCLE-SITNA----HDDAINAVALSD--DG--DVYT 201 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s------------~d~~i~iwd~~~~--~~~~-~~~~~----h~~~v~~v~~~~--~~--~~~s 201 (362)
...+...|+|..+++++ .+|.|.++|..+. +..+ .+... ..-....+.+.+ ++ +++.
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34566777776555542 6899999998742 2211 11111 122456676644 45 3554
Q ss_pred Ee---CCCeEEEEeCCCCCCcceeehhhhcc-ccceeEEEEecCCCEEEEEcC-----------------CCcEEEEecc
Q 044557 202 GS---ADKKIKVWRRSPGNKKHSLVDVLERH-NSGINALALSCDGSVLYSGAC-----------------DRSIIVWEKE 260 (362)
Q Consensus 202 ~~---~dg~i~iw~~~~~~~~~~~~~~~~~h-~~~v~~i~~s~~~~~l~s~~~-----------------d~~i~~wd~~ 260 (362)
+. .+.+|.+|+++.......+.....+. -...+.+.+.++|.+.++... .|.|..++.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 42 25688898877654433444333322 245789999999998877641 244544543
Q ss_pred CCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCC
Q 044557 261 EDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 261 ~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~ 304 (362)
.+. ..+.. .......++++++ ++++-+..+.|..|+..
T Consensus 211 -~~~-~~~~~----~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 211 -NDV-RVVAE----GFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp -TCC-EEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred -CeE-EEeec----CCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 211 11111 1223467788765 55666677889888864
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.67 E-value=10 Score=34.85 Aligned_cols=155 Identities=8% Similarity=0.074 Sum_probs=88.3
Q ss_pred ceeEEEEecC-CCEEEEE-ECCCcEEEEECCCceEEEeeecc--CcccEEEEEE-------cCCCc-EEEEeCCC-----
Q 044557 144 AVSALALTKD-ETLLYSV-SWDRTIKIWRTSDFKCLESITNA--HDDAINAVAL-------SDDGD-VYTGSADK----- 206 (362)
Q Consensus 144 ~v~~~~~~~~-~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~--h~~~v~~v~~-------~~~~~-~~s~~~dg----- 206 (362)
....|+|+|. ...|+.+ ...+.|++.|.+++......... .......++| ++++. ++.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4578899983 4444444 44478999998887654333211 1234789999 99987 66665543
Q ss_pred --eEEEEeCCC-CCCcc----eeehhhhccccceeEEEEecCCC-EEEEEcCCCcEEEEecc-------CCCC------c
Q 044557 207 --KIKVWRRSP-GNKKH----SLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKE-------EDDG------N 265 (362)
Q Consensus 207 --~i~iw~~~~-~~~~~----~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~d~~i~~wd~~-------~~~~------~ 265 (362)
.|.+++... +.... .... .. .....++++|++. ++++-..++.|..+|+. .... .
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~---~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA---AY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE---EE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCceeecccceeec---cC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 356665443 12110 1111 11 1335678899554 45566677889999987 3321 0
Q ss_pred ----EEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeC
Q 044557 266 ----ILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRG 303 (362)
Q Consensus 266 ----~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~ 303 (362)
...+.... .......++++++ ++++=+..+.|+.++.
T Consensus 296 ~~g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 296 NPNTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CTTTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cccccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 11111221 2233467777653 4666677788888653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.50 E-value=7.4 Score=33.02 Aligned_cols=157 Identities=8% Similarity=0.099 Sum_probs=71.0
Q ss_pred ecCCCEEEEEEC----CC-------cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-------CeEEEE
Q 044557 151 TKDETLLYSVSW----DR-------TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-------KKIKVW 211 (362)
Q Consensus 151 ~~~~~~l~s~s~----d~-------~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-------g~i~iw 211 (362)
..++.+++.|+. ++ .+.+||..+.+....-.......-.+++.. +++ ++.|+.+ ..+.+|
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEE
Confidence 345667777763 12 177788876653321110110011122222 455 4555543 357778
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEe
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 285 (362)
|..+.. -+....+......- +++ ..+++.++.||.+ +.+.+||..+. ....+..+........++...
T Consensus 133 d~~~~~--W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~ 206 (318)
T 2woz_A 133 DPVAAK--WSEVKNLPIKVYGH-NVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIHK 206 (318)
T ss_dssp ETTTTE--EEEECCCSSCEESC-EEE-EETTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEET
T ss_pred eCCCCC--EeECCCCCCccccc-EEE-EECCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEEC
Confidence 876542 11111111111111 122 2467777777642 35888888753 233333332211112233334
Q ss_pred CCeEEEeeCC-----CcEEEeeCCCCceeeeeEe
Q 044557 286 SDLVCSGSAD-----KTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 286 ~~~~~s~s~D-----~~i~~W~~~~~~~~~~~~l 314 (362)
+.+++.|+.+ ..+.+||.....+..+..+
T Consensus 207 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 240 (318)
T 2woz_A 207 GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF 240 (318)
T ss_dssp TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCC
T ss_pred CEEEEEcCcCCCCccceEEEEECCCCeEEECCCC
Confidence 4455666543 2466777665556555433
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.44 E-value=8.1 Score=33.37 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=15.2
Q ss_pred CCCEEEEEEC-C---------CcEEEEECCCceE
Q 044557 153 DETLLYSVSW-D---------RTIKIWRTSDFKC 176 (362)
Q Consensus 153 ~~~~l~s~s~-d---------~~i~iwd~~~~~~ 176 (362)
++++++.|+. + ..+.+||..+.+-
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 4555555554 2 4688899887653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.22 E-value=7 Score=32.33 Aligned_cols=208 Identities=10% Similarity=0.114 Sum_probs=108.8
Q ss_pred ecccCccceeeeEec--Cc-EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEe-cCC
Q 044557 14 TLKGHNSYVSSLALA--GK-FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAH-QDH 88 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~-~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~-~dg 88 (362)
-|.|-.+.+..|+++ ++ +++....++.|...|.. .. ...... ..+......|.+.++ .++.++ .++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~--v~~~i~------l~g~~D~EGIa~~~~g~~~vs~E~~~ 91 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD--LIRTIP------LDFVKDLETIEYIGDNQFVISDERDY 91 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC--EEEEEE------CSSCSSEEEEEECSTTEEEEEETTTT
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC--EEEEEe------cCCCCChHHeEEeCCCEEEEEECCCC
Confidence 456666789999995 33 55556678888888865 11 111110 011234445555444 343333 456
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
.+.++++...... . ......++.. ..........++++|.++.|+++.+.....|
T Consensus 92 ~l~~~~v~~~~~i-~-~~~~~~~~~~-----------------------~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i 146 (255)
T 3qqz_A 92 AIYVISLTPNSEV-K-ILKKIKIPLQ-----------------------ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEV 146 (255)
T ss_dssp EEEEEEECTTCCE-E-EEEEEECCCS-----------------------SCCCSSCCEEEEEETTTTEEEEEEESSSEEE
T ss_pred cEEEEEcCCCCee-e-eeeeeccccc-----------------------cccccCCcceEEEeCCCCEEEEEECcCCceE
Confidence 7777776543210 0 0000000000 0012334678999999987777776655566
Q ss_pred EECCC---ceEEEeee------ccCcccEEEEEEcCCC-c-EEEEeCCCeEEEEeCCCCCCcceeehhhhcc------cc
Q 044557 169 WRTSD---FKCLESIT------NAHDDAINAVALSDDG-D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERH------NS 231 (362)
Q Consensus 169 wd~~~---~~~~~~~~------~~h~~~v~~v~~~~~~-~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h------~~ 231 (362)
|.+.. ...+..+. ..+...+.++++.|.. + ++.....+.+.++|... ... .......+. -.
T Consensus 147 ~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~-~~~~L~~g~~~l~~~~~ 224 (255)
T 3qqz_A 147 YKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVI-GEMSLTKGSRGLSHNIK 224 (255)
T ss_dssp EEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEE-EEEECSTTGGGCSSCCC
T ss_pred EEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEE-EEEEcCCccCCcccccC
Confidence 65531 11111111 1123346788998764 4 44556677888888653 322 222111111 12
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
.--.|+|.++|. |+..+..+.++.+.
T Consensus 225 qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 225 QAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp SEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred CCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 345799999997 55557767555554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.12 E-value=8.8 Score=33.30 Aligned_cols=173 Identities=12% Similarity=0.035 Sum_probs=97.6
Q ss_pred CceeEEEEecCCCEEE-EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCcE-EEEeCCCeEEEEeCCCCCCc
Q 044557 143 DAVSALALTKDETLLY-SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGDV-YTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~-~s~~~dg~i~iw~~~~~~~~ 219 (362)
..+..++|++....|+ +-...+.|..+++........+. ........+++.+ ++.+ ++-...+.|.+.+++... .
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~ 150 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-R 150 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-e
Confidence 3467889997665555 44467889999987654322222 2223456788886 4554 455667899999886432 2
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEc-CC-CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeC
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGA-CD-RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSA 294 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d-~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~ 294 (362)
..+.. ..-.....+++.|.+..|+... .. +.|..+++.... . ..+ ..........+++++ . ++++-+.
T Consensus 151 ~~l~~---~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~-~~~--~~~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 151 KVLLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-R-RII--ADTHLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp EEEEC---TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-C-EES--CCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEe---CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-c-EEE--EECCCCCcceEEEeCCCCEEEEEECC
Confidence 22221 1223467899999766655444 34 678888775422 1 111 111223456777763 3 5566666
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEe
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~ 326 (362)
.+.|..++........ .+........++++
T Consensus 224 ~~~I~~~~~dG~~~~~--~~~~~~~~P~giav 253 (349)
T 3v64_C 224 HHVIERANLDGSHRKA--VISQGLPHPFAITV 253 (349)
T ss_dssp TTEEEEEETTSCSCEE--EECSSCSSEEEEEE
T ss_pred CCEEEEEeCCCCceEE--EEeCCCCCceEEEE
Confidence 7788888754322111 12222334566666
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.63 E-value=16 Score=35.72 Aligned_cols=153 Identities=18% Similarity=0.096 Sum_probs=90.1
Q ss_pred CceeEEEEecCCCEEE-EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEEEEe-C-CCeEEEEeCCCCCC
Q 044557 143 DAVSALALTKDETLLY-SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVYTGS-A-DKKIKVWRRSPGNK 218 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~-~-dg~i~iw~~~~~~~ 218 (362)
.....|++.+.++.|+ +-...+.|.+.++..... ..+..........|++.|. +.|+-.. . .+.|...+++. ..
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~ 548 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VD 548 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CC
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-Cc
Confidence 3456788888775444 445678999999875443 2232233345789999986 5555443 3 37888888753 32
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADK 296 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~ 296 (362)
...++. ..-...+.|++.+.+..|+.+. ..+.|...++.... ...++ .-.+.......|++..+ ++++-...+
T Consensus 549 ~~~lv~---~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~-~~~v~-~~~~~l~~P~glav~~~~lYwtD~~~~ 623 (791)
T 3m0c_C 549 IYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTIL-EDEKRLAHPFSLAVFEDKVFWTDIINE 623 (791)
T ss_dssp EEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE-ECTTTTSSEEEEEEETTEEEEEETTTT
T ss_pred eEEEEe---CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc-eEEEe-cCCCccCCCCEEEEeCCEEEEEECCCC
Confidence 222221 1223567899998777776664 45678888876432 22222 11122223456666665 455555666
Q ss_pred cEEEee
Q 044557 297 TIRIWR 302 (362)
Q Consensus 297 ~i~~W~ 302 (362)
.|...+
T Consensus 624 ~I~~~d 629 (791)
T 3m0c_C 624 AIFSAN 629 (791)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 676655
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.79 E-value=12 Score=31.73 Aligned_cols=136 Identities=13% Similarity=0.178 Sum_probs=61.2
Q ss_pred CCCEEEEEECC-------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcE-EEEeC------CCeEEEEeCCCCCC
Q 044557 153 DETLLYSVSWD-------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDV-YTGSA------DKKIKVWRRSPGNK 218 (362)
Q Consensus 153 ~~~~l~s~s~d-------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~s~~~------dg~i~iw~~~~~~~ 218 (362)
++++++.|+.+ ..+.+||..+.+-...-.......-.+++. .++++ +.|+. -..+.+||..+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~- 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD- 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence 56666667654 357788887755322111010000011222 35553 44443 2358889887642
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCC-----cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEee
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDR-----SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGS 293 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s 293 (362)
-.....+......-.++. -+++.++.||.++ .+.+||..+. ....+..+........++.+.+.+++.|+
T Consensus 187 -W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 187 -WKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTN--KWEVMTEFPQERSSISLVSLAGSLYAIGG 261 (318)
T ss_dssp -EEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTC--CEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred -EEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCC--eEEECCCCCCcccceEEEEECCEEEEECC
Confidence 111111111111112222 3677777777543 4667887653 23333333322222223333444666666
Q ss_pred CC
Q 044557 294 AD 295 (362)
Q Consensus 294 ~D 295 (362)
.+
T Consensus 262 ~~ 263 (318)
T 2woz_A 262 FA 263 (318)
T ss_dssp BC
T ss_pred ee
Confidence 54
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.27 E-value=6.7 Score=34.14 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=46.1
Q ss_pred cEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee--hhhhccccceeEEEEecC---CCEEEEEcCC------CcEE
Q 044557 187 AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV--DVLERHNSGINALALSCD---GSVLYSGACD------RSII 255 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~--~~~~~h~~~v~~i~~s~~---~~~l~s~~~d------~~i~ 255 (362)
..+.++|.|+|.++.+..+|.|.+++ ++.. ..+. ............|+++|+ +..|+.+... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 46789999999988888889999998 3321 1111 111112345788999998 6666555432 5677
Q ss_pred EEecc
Q 044557 256 VWEKE 260 (362)
Q Consensus 256 ~wd~~ 260 (362)
.|+..
T Consensus 109 r~~~~ 113 (352)
T 2ism_A 109 RLRHL 113 (352)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77765
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=87.17 E-value=4.7 Score=35.21 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=46.2
Q ss_pred cEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeeh--hhhccccceeEEEEecC---CCEEEEEcC----C----Cc
Q 044557 187 AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD--VLERHNSGINALALSCD---GSVLYSGAC----D----RS 253 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~h~~~v~~i~~s~~---~~~l~s~~~----d----~~ 253 (362)
..+.++|.|+|.++.+..+|.|++++. ++. ..+.. ...........|+++|+ +..|+.+.. + +.
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 467899999999888888899999973 332 11111 11112345788999998 556555443 3 56
Q ss_pred EEEEeccC
Q 044557 254 IIVWEKEE 261 (362)
Q Consensus 254 i~~wd~~~ 261 (362)
|..|+...
T Consensus 107 v~r~~~~~ 114 (354)
T 3a9g_A 107 VIRGRLDG 114 (354)
T ss_dssp EEEEEECS
T ss_pred EEEEEECC
Confidence 77777654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=86.74 E-value=14 Score=33.67 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=60.3
Q ss_pred cCceeEEEEecCCC-EEEEEECCCcEEEEECCCce---EEEeee----c----cCcccEEEEEEcCC----CcEE-EEe-
Q 044557 142 VDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFK---CLESIT----N----AHDDAINAVALSDD----GDVY-TGS- 203 (362)
Q Consensus 142 ~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~---~~~~~~----~----~h~~~v~~v~~~~~----~~~~-s~~- 203 (362)
......|+|.||+. .|+.+...|.|++++..... .+..+. . ........|+++|+ +.|+ +-+
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 35567899999996 34455778999999754321 111111 0 01345788999996 5543 322
Q ss_pred -CC----------CeEEEEeCCCCCC-------cceeehh---hhccccceeEEEEecCCCEEEEEcCC
Q 044557 204 -AD----------KKIKVWRRSPGNK-------KHSLVDV---LERHNSGINALALSCDGSVLYSGACD 251 (362)
Q Consensus 204 -~d----------g~i~iw~~~~~~~-------~~~~~~~---~~~h~~~v~~i~~s~~~~~l~s~~~d 251 (362)
.+ ..|.-|.+..+.. ...++.. ...|. ...|+|.|||.+.++-+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCCC
Confidence 12 1444566653210 1112211 11243 5789999999877766543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=85.47 E-value=18 Score=31.48 Aligned_cols=75 Identities=25% Similarity=0.294 Sum_probs=46.7
Q ss_pred ccEEEEEEcCCCcEEEEeC-CCeEEEEeCCCCCCcceee---hhhhccccceeEEEEecC---CCEEEEE---cCCCcEE
Q 044557 186 DAINAVALSDDGDVYTGSA-DKKIKVWRRSPGNKKHSLV---DVLERHNSGINALALSCD---GSVLYSG---ACDRSII 255 (362)
Q Consensus 186 ~~v~~v~~~~~~~~~s~~~-dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i~~s~~---~~~l~s~---~~d~~i~ 255 (362)
...+.++|.|+|.++.+.. .|.|++++...+... .+. ............|+++|+ +..|+.. ..++.|.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 3568999999999777776 899999976544321 111 111223456788999995 4445432 3455666
Q ss_pred EEeccC
Q 044557 256 VWEKEE 261 (362)
Q Consensus 256 ~wd~~~ 261 (362)
-|....
T Consensus 111 R~~~~~ 116 (347)
T 3das_A 111 RMLYDE 116 (347)
T ss_dssp EEEBCT
T ss_pred EEEeCC
Confidence 665543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=85.21 E-value=17 Score=31.03 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=89.7
Q ss_pred ceeEEEEecCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEEEEe--CCCeEEEEeCCCCCCc
Q 044557 144 AVSALALTKDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVYTGS--ADKKIKVWRRSPGNKK 219 (362)
Q Consensus 144 ~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~--~dg~i~iw~~~~~~~~ 219 (362)
....+++.+.+ ++.++-...+.|.+.++..... ..+..........+++.|. |.++.+. ..+.|...+++. ...
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~ 157 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSR 157 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSC
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCe
Confidence 45678888744 4455555678999999875432 2222223345788999875 5555444 357888888753 222
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCc
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKT 297 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~ 297 (362)
..+.. ..-...+.|+++|++..|+.+ +..+.|..+++.... ...+. .+.......+++..+ ++.+-...+.
T Consensus 158 ~~~~~---~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~---~~~~~~P~glav~~~~lywtd~~~~~ 230 (318)
T 3sov_A 158 FIIIN---SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVV---KGSLPHPFALTLFEDILYWTDWSTHS 230 (318)
T ss_dssp EEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE---CSCCSCEEEEEEETTEEEEEETTTTE
T ss_pred EEEEE---CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEe---cCCCCCceEEEEeCCEEEEEecCCCe
Confidence 22221 112235789999977766655 456789999886432 22222 222334456666655 5666667778
Q ss_pred EEEeeC
Q 044557 298 IRIWRG 303 (362)
Q Consensus 298 i~~W~~ 303 (362)
|..++.
T Consensus 231 V~~~~~ 236 (318)
T 3sov_A 231 ILACNK 236 (318)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 887774
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=84.68 E-value=22 Score=32.04 Aligned_cols=127 Identities=11% Similarity=0.149 Sum_probs=81.2
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 147 ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
+.-.+|..+.+|--. ..++.|+|+++...+..... ...|..-.|-.+..++- -.+..|.-|+++......+. +
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~--~e~VvfWkWis~~~l~l-VT~taVyHWsi~~~s~P~kv---F 142 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISLNTVAL-VTDNAVYHWSMEGESQPVKM---F 142 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC--SSCCCEEEEEETTEEEE-ECSSEEEEEESSSSCCCEEE---E
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec--CCCceEEEecCCCeEEE-EcCCeeEEecccCCCCchhh---e
Confidence 344678888777665 68999999999988887653 34566666654444333 24568999998753322222 2
Q ss_pred hcc----ccceeEEEEecCCCEEEEEcC-------CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe
Q 044557 227 ERH----NSGINALALSCDGSVLYSGAC-------DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 227 ~~h----~~~v~~i~~s~~~~~l~s~~~-------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 285 (362)
.+| ...|.....+++.++++..|- .|.+-+|+.+... ...++||......+.+.
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-----sQ~ieGhaa~F~~~~~~ 207 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFKME 207 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-----EEEECCSEEEEEEEECT
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-----cchheeeeeeeEEEecC
Confidence 222 356777788899988774432 3567888876432 23467887766555554
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.54 E-value=3.4 Score=35.87 Aligned_cols=107 Identities=10% Similarity=0.147 Sum_probs=60.1
Q ss_pred CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEc---CCCcEEEE--eCCCeEEEEeCCCCCCcceeehhhhc-
Q 044557 155 TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS---DDGDVYTG--SADKKIKVWRRSPGNKKHSLVDVLER- 228 (362)
Q Consensus 155 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~---~~~~~~s~--~~dg~i~iw~~~~~~~~~~~~~~~~~- 228 (362)
..++.++.||.|.-.|.++++.+-.+......++....-. .++.++.+ ..||.+..++..++...... ....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~--~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL--SIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE--EHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee--ccccc
Confidence 4677899999999999999987766543311222221100 13344444 57999988888766322111 1110
Q ss_pred -cccceeE---EEE-e----cCCCEEEEEcCCCcEEEEeccCCC
Q 044557 229 -HNSGINA---LAL-S----CDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 229 -h~~~v~~---i~~-s----~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
...++.. ..+ . ..+..+++|+.++.+...|+.+++
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 1122211 000 0 045678888888888888877644
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=84.54 E-value=23 Score=32.00 Aligned_cols=117 Identities=12% Similarity=0.166 Sum_probs=65.1
Q ss_pred eeEEEEecCCCEEEEEE-------CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC---cEEE-Ee---CCCeEEE
Q 044557 145 VSALALTKDETLLYSVS-------WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG---DVYT-GS---ADKKIKV 210 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s-------~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~~s-~~---~dg~i~i 210 (362)
|.....+++.++++..| -.|.+.+|..+.... + ...+|....-.+.+..+. .+++ +. ..+++.|
T Consensus 153 IInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q-~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-Q-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp EEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-E-EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred EEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-c-hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 44445566666555332 136788999886543 2 234676544444333221 2332 22 2378888
Q ss_pred EeCCCC-CCccee----ehhh---hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 211 WRRSPG-NKKHSL----VDVL---ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 211 w~~~~~-~~~~~~----~~~~---~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
-++... .....+ .... ..-..-.-++.+++.-..++.-..-|.|.+||++++.
T Consensus 231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred EEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence 887543 111111 1110 0112223467888888889999999999999998754
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=83.54 E-value=19 Score=31.14 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=44.8
Q ss_pred cEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee---hhhhccccceeEEEEecC---CCEEEEEcC--------C
Q 044557 187 AINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV---DVLERHNSGINALALSCD---GSVLYSGAC--------D 251 (362)
Q Consensus 187 ~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i~~s~~---~~~l~s~~~--------d 251 (362)
..+.|+|.|+|+ ++.+...|.|++++.. +.....+. ............|+++|+ +..|+.+.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999999 9988889999999853 21110011 111112345678999996 555554432 2
Q ss_pred CcEEEEeccC
Q 044557 252 RSIIVWEKEE 261 (362)
Q Consensus 252 ~~i~~wd~~~ 261 (362)
..|..|+...
T Consensus 98 ~~v~r~~~~~ 107 (353)
T 2g8s_A 98 TAVGYGRLSD 107 (353)
T ss_dssp EEEEEEEECT
T ss_pred eEEEEEEECC
Confidence 3566666543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.58 E-value=21 Score=30.06 Aligned_cols=142 Identities=8% Similarity=0.035 Sum_probs=65.8
Q ss_pred CcEEEEECCCceEEEeeeccC--cccEEEEEEcCCCc-EEEEeC----C-------CeEEEEeCCCCCCcceeehhhhcc
Q 044557 164 RTIKIWRTSDFKCLESITNAH--DDAINAVALSDDGD-VYTGSA----D-------KKIKVWRRSPGNKKHSLVDVLERH 229 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h--~~~v~~v~~~~~~~-~~s~~~----d-------g~i~iw~~~~~~~~~~~~~~~~~h 229 (362)
..+.+||..+.+-.. ..... ...-.+++. .++. ++.|+. + ..+..||..+..- .....+...
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~ 88 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGMPPLPSP 88 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EECCCBSSC
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EECCCCCcc
Confidence 678899988876432 11111 111222333 3555 455552 1 1267778765421 111111111
Q ss_pred ccceeEEEEecCCCEEEEEcCC--------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeC-C-----
Q 044557 230 NSGINALALSCDGSVLYSGACD--------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSA-D----- 295 (362)
Q Consensus 230 ~~~v~~i~~s~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~-D----- 295 (362)
...-..+. -+++.++.||.+ +.+.+||..+. ....+..+........++...+.+++.|+. +
T Consensus 89 r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 89 RCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp EESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred hhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence 11111122 266777777743 45788887653 233333332222222233334446666665 2
Q ss_pred CcEEEeeCCCCceeeeeE
Q 044557 296 KTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~ 313 (362)
..+.+||.....+..+..
T Consensus 165 ~~~~~yd~~~~~W~~~~~ 182 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAP 182 (315)
T ss_dssp CCEEEEETTTTEEEECCC
T ss_pred ceEEEEeCCCCeEEECCC
Confidence 357778765555554443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=81.52 E-value=36 Score=32.15 Aligned_cols=154 Identities=12% Similarity=0.049 Sum_probs=87.0
Q ss_pred CceeEEEEecCCCEEEEEE-CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEE-EEeCCCeEEEEeCCCCCCc
Q 044557 143 DAVSALALTKDETLLYSVS-WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVY-TGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~-s~~~dg~i~iw~~~~~~~~ 219 (362)
..+..++|++.+..|+-+. ..+.|..++++.......+....-.....+++.+. +.++ +-...+.|.+.+++.. ..
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-~~ 118 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LR 118 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SC
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC-CE
Confidence 3467889998766665554 46788888887653222222222246789999984 4554 5556789999998643 22
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeC
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSA 294 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~ 294 (362)
..+.. ..-.....|++.|.+..|+-... .+.|...++... ....++ .........+++++ . ++++=+.
T Consensus 119 ~~l~~---~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~l~---~~~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 119 KVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIII---NSEIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp EEEEC---SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEE---CSSCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEEe---CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEEEE---eCCCCCCcEEEEEccCCEEEEEeCC
Confidence 22321 12234668999997666665543 345665665432 222221 11233456677763 3 4555556
Q ss_pred CCcEEEeeCC
Q 044557 295 DKTIRIWRGI 304 (362)
Q Consensus 295 D~~i~~W~~~ 304 (362)
.+.|...+..
T Consensus 192 ~~~I~~~~~d 201 (619)
T 3s94_A 192 LNFIHKSNLD 201 (619)
T ss_dssp TCCEEEESSS
T ss_pred CCeEEEecCC
Confidence 6777777753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 362 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-25 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-24 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.003 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-21 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-19 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.002 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-18 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-17 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-13 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-12 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-09 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.003 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.003 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.004 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 3e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.003 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.001 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.001 | |
| d1q7fa_ | 279 | b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 102 bits (254), Expect = 2e-25
Identities = 63/301 (20%), Positives = 113/301 (37%), Gaps = 16/301 (5%)
Query: 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVG 67
TL+GH + + ++ + L + S D ++ WD T + S+ +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 68 KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLM---- 123
+ + + + K R + L+ L D I
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 124 PKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA 183
+T T+ H V +L+L D L S + D + K+W + C ++ T
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-G 224
Query: 184 HDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242
H+ INA+ +G+ TGS D +++ + + GI +++ S G
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM--TYSHDNIICGITSVSFSKSG 282
Query: 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRI 300
+L +G D + VW+ + D G L GH + C+ V D V +GS D ++I
Sbjct: 283 RLLLAGYDDFNCNVWDALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Query: 301 W 301
W
Sbjct: 339 W 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.0 bits (128), Expect = 8e-09
Identities = 30/169 (17%), Positives = 48/169 (28%), Gaps = 45/169 (26%)
Query: 5 SVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNN 62
V + C T GH S ++++ G TGS D R +D + +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 63 IVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIK 120
+ S+ L + + D VW +
Sbjct: 272 -------GITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-------------------- 304
Query: 121 LLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIW 169
H + VS L +T D + + SWD +KIW
Sbjct: 305 --------------AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.4 bits (124), Expect = 2e-08
Identities = 38/234 (16%), Positives = 78/234 (33%), Gaps = 16/234 (6%)
Query: 122 LMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT 181
+ P +Q+R +T H+ + A+ D LL S S D + IW + + +I
Sbjct: 37 IDPVGRIQMRTRRTLR--GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 182 NAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241
+ A + G+ I + + V ++G + D
Sbjct: 95 L-RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153
Query: 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW 301
+ + + + D + +W+ E L +A + L SG+ D + ++W
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTT--TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 302 RGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355
R C GH + + + + +GS D +++
Sbjct: 212 DV--REGMCRQTFTGHESDINAICFFPNGN---------AFATGSDDATCRLFD 254
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.9 bits (89), Expect = 7e-04
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 5 SVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWD 45
+ L GH++ VS L + G + TGS D+ ++ W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 98.7 bits (244), Expect = 5e-24
Identities = 54/316 (17%), Positives = 116/316 (36%), Gaps = 39/316 (12%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
L GH S V+ + + + S D ++ WD T + ++ + + V
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDH 69
Query: 72 KSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAI---KLLMPKNHV 128
++ + + + ++ H ++ GD + + K
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
+ T+ H + V + +D TL+ S S D+T+++W + +C + H +
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVV 188
Query: 189 NAVALSDDGD---------------------VYTGSADKKIKVWRRSPGNKKHSLVDVLE 227
++ + + + +GS DK IK+W S G +LV
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG--- 245
Query: 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287
H++ + + G + S A D+++ VW+ + + L H + +
Sbjct: 246 -HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----CMKTLNAHEHFVTSLDFHKT 300
Query: 288 --LVCSGSADKTIRIW 301
V +GS D+T+++W
Sbjct: 301 APYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.3 bits (186), Expect = 3e-16
Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 20/179 (11%)
Query: 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140
+ S D +RVW + +E + + + + +
Sbjct: 158 IASCSNDQTVRVWVVATKECKAELREHRH--------------VVECISWAPESSYSSIS 203
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V 199
K L S S D+TIK+W S CL ++ HD+ + V G +
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFI 262
Query: 200 YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258
+ + DK ++VW + L H + +L + +G+ D+++ VWE
Sbjct: 263 LSCADDKTLRVWDYKNK----RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.8 bits (164), Expect = 2e-13
Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 23/230 (10%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY 200
H V+ + +++ S S D TIK+W ++ H D++ +
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDI---SFDHSG 71
Query: 201 TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKE 260
A + + + + + H+ ++++++ +G + S + D++I +WE +
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 261 EDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318
V GH + + + D L+ S S D+T+R+W C A L HR
Sbjct: 132 TGY----CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV--VATKECKAELREHR 185
Query: 319 GPVKCLAAAIDNDR-----------CDSSDTSYLVCSGSLDCDIKVWQIS 357
V+C++ A ++ S + SGS D IK+W +S
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.1 bits (162), Expect = 3e-13
Identities = 36/207 (17%), Positives = 76/207 (36%), Gaps = 25/207 (12%)
Query: 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVA 65
+C+ T GH +V + G + + S+D VR W T A
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC------------KA 179
Query: 66 VGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPK 125
+ + ++ S++ + + + D+ IK+
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS----RDKTIKMWDVS 235
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185
+ + T V H + V + + S + D+T+++W + +C++++ AH+
Sbjct: 236 TGMCLM-----TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHE 289
Query: 186 DAINAVALSDDGD-VYTGSADKKIKVW 211
+ ++ V TGS D+ +KVW
Sbjct: 290 HFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (100), Expect = 2e-05
Identities = 33/149 (22%), Positives = 52/149 (34%), Gaps = 18/149 (12%)
Query: 209 KVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILV 268
K W P K L H S + + SV+ S + D +I VW+ E D
Sbjct: 1 KEWIPRPPEKY-----ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----F 51
Query: 269 VGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI 328
L+GHT S+ ++ S + I + + C+ + GH V
Sbjct: 52 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSS----- 106
Query: 329 DNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
+ S S D IK+W++
Sbjct: 107 ----VSIMPNGDHIVSASRDKTIKMWEVQ 131
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.6 bits (83), Expect = 0.003
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWD 45
C+ TL H +V+SL ++ TGS D V+ W+
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.2 bits (227), Expect = 2e-21
Identities = 44/365 (12%), Positives = 110/365 (30%), Gaps = 40/365 (10%)
Query: 11 CLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGA 70
K H++ + S++ F + S D ++ WD +E ++ ++ + G
Sbjct: 6 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 71 VKSLVVLADK------LFSAHQDHKIRVWKINNQEP-----DHQKYTRLATLPTLGDRAI 119
V L + + + + ++I ++ + + + A+
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125
Query: 120 KLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLES 179
K + + R + DE+ +++W T+++ T
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTT-YIWKFHPFADESNSLTLNWSPTLELQGTV------E 178
Query: 180 ITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL--ERHNSGINALA 237
+V +S+ G + TG + +++ S ++ +++ I ++
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 238 LSCDGSVLYSGACDRSIIV------------WEKEEDDGNILVVGALRGHTKSILCMAV- 284
S GS+L S + H+ ++ ++
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 285 -VSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC 343
+ +CS D +R W + + L H ++ + L
Sbjct: 299 DSGETLCSAGWDGKLRFWDV--KTKERITTLNMHCDDIEIEEDIL----AVDEHGDSLAE 352
Query: 344 SGSLD 348
G D
Sbjct: 353 PGVFD 357
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (141), Expect = 3e-10
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 2/94 (2%)
Query: 266 ILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW--RGIDRNYTCLAVLEGHRGPVKC 323
I A + H I ++ + S S D +++W + +D
Sbjct: 4 IATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63
Query: 324 LAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
+ + LV + S D+ ++I+
Sbjct: 64 HHVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 97
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 4e-06
Identities = 34/336 (10%), Positives = 92/336 (27%), Gaps = 72/336 (21%)
Query: 22 VSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG--------AVKS 73
+ A + T S ++ + F + + + K +
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 74 LVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKN------- 126
+L+ +L + +WK + + T + ++ M +
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 127 ------------------------HVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162
+ +++ +++ ++ + +LL
Sbjct: 192 ISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251
Query: 163 DRTIKIWRTSDFKCLESITNA---------------HDDAINAVALSDDGDVY-TGSADK 206
+ + + E I + H + +++ +D G+ + D
Sbjct: 252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311
Query: 207 KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI 266
K++ W + +L + + LA+ G L + +K G
Sbjct: 312 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF-DVKFLKKGWRSG-- 368
Query: 267 LVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWR 302
A +++ +C D++IR +R
Sbjct: 369 --------------MGADLNESLCCVCLDRSIRWFR 390
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (98), Expect = 5e-05
Identities = 16/151 (10%), Positives = 42/151 (27%), Gaps = 21/151 (13%)
Query: 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM 282
+ + H++ I +++ S S + D + VW+ + D +
Sbjct: 7 ANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 283 AVVS-----------DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAA----- 326
V LV + S + +R + + +
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRI--TREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 327 -AIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
A+ + S+ + + + +W+
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKF 153
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.4 bits (212), Expect = 2e-19
Identities = 67/360 (18%), Positives = 127/360 (35%), Gaps = 44/360 (12%)
Query: 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG 69
L H S V + + G++L TG + + + + S +VA
Sbjct: 55 LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS------------LVARLSD 101
Query: 70 AVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQ 129
+ + S+ + + + T + + +
Sbjct: 102 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT-----------GAEDRLIRIWDI 150
Query: 130 IRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN 189
R H + +L L S S DRT++IW +C +++
Sbjct: 151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV 210
Query: 190 AVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL---VDVLERHNSGINALALSCDGSVLY 246
AV+ D + GS D+ ++VW G L + H + ++ + DG +
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 247 SGACDRSIIVWEKEEDDG--------NILVVGALRGHTKSILCMAVVSD--LVCSGSADK 296
SG+ DRS+ +W + + + GH +L +A + + SGS D+
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 297 TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
+ W ++ L +L+GHR V +A A N + + +GS DC ++W+
Sbjct: 331 GVLFWDK--KSGNPLLMLQGHRNSVISVAVA--NGSSLGPEYNVFA-TGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.7 bits (161), Expect = 8e-13
Identities = 47/283 (16%), Positives = 102/283 (36%), Gaps = 32/283 (11%)
Query: 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCN--------TFSSELDQE 56
++ ++ + Y+ S+ + GKFL TG+ D +R WD +
Sbjct: 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168
Query: 57 FLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGD 116
+ + G+ V + D + +A
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228
Query: 117 RAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176
+ V+ + + H D+V ++ T+D + S S DR++K+W +
Sbjct: 229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288
Query: 177 L-----------ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVD 224
E H D + +VA + + + + +GS D+ + W + GN +
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN----PLL 344
Query: 225 VLERHNSGINALA------LSCDGSVLYSGACDRSIIVWEKEE 261
+L+ H + + ++A L + +V +G+ D +W+ ++
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 1e-07
Identities = 44/297 (14%), Positives = 96/297 (32%), Gaps = 27/297 (9%)
Query: 68 KGAVKSLVVLAD-KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKN 126
V + D + + + +V+++++ +
Sbjct: 62 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSD----------------DSAA 105
Query: 127 HVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD 186
+ T + + ++ + D L + + DR I+IW + K + + D
Sbjct: 106 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 165
Query: 187 AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY 246
+ + +GS D+ +++W G L + DG +
Sbjct: 166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL----TLSIEDGVTTVAVSPGDGKYIA 221
Query: 247 SGACDRSIIVWEKEEDDGN---ILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301
+G+ DR++ VW+ E + GH S+ + D V SGS D+++++W
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
Query: 302 RGID-RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
+ N + V + ++ + SGS D + W
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 7e-05
Identities = 42/257 (16%), Positives = 80/257 (31%), Gaps = 71/257 (27%)
Query: 163 DRTIKIWRTSDFKCLE---SITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKK 219
+ ++ + + ++ + H + V S+DG+ +K +V+R S G+
Sbjct: 37 NDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLV 96
Query: 220 HSLVD--------------VLERHNSGINALALSCDGSVLYSGACDRSII---------- 255
L D + I ++ S DG L +GA DR I
Sbjct: 97 ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 156
Query: 256 ------------------------------VWEKEEDDGNILVVGALRGHTKSILCMAVV 285
V + G + ++ ++
Sbjct: 157 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 216
Query: 286 SDLVCSGSADKTIRIW-----RGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSY 340
+ +GS D+ +R+W ++R + GH+ V + D
Sbjct: 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--------- 267
Query: 341 LVCSGSLDCDIKVWQIS 357
V SGSLD +K+W +
Sbjct: 268 SVVSGSLDRSVKLWNLQ 284
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (85), Expect = 0.002
Identities = 24/173 (13%), Positives = 46/173 (26%), Gaps = 15/173 (8%)
Query: 197 GDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIV 256
D + ++ + + + H S + + S DG L +G C+++ V
Sbjct: 29 PDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQV 87
Query: 257 W--------------EKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWR 302
+ D L + I + D + + I
Sbjct: 88 YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRI 147
Query: 303 GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355
N + +L+GH + L D+ S V L
Sbjct: 148 WDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 200
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.8 bits (200), Expect = 5e-18
Identities = 65/355 (18%), Positives = 123/355 (34%), Gaps = 35/355 (9%)
Query: 10 HCLTTLKGHNSYV-SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
LKGH+ +V + L G + +GS DN ++ W T +
Sbjct: 7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL---------RTLVGHT 57
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
G V S + + + S D ++VW E H Y +T+ + +++
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 129 QIR----RHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH 184
+R C V + + D + S ++D +K+W CL ++
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ--G 175
Query: 185 DDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244
D V +GS D I+VW GN H+ + ++
Sbjct: 176 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT------LTGHQSLTSGMELKDNI 229
Query: 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGI 304
L SG D ++ +W+ + + + H ++ C+ + V + S D T+++W
Sbjct: 230 LVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL- 287
Query: 305 DRNYTCLAVL-----EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354
+ + L G G V + A+ C +G+ + + V
Sbjct: 288 -KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR-----NGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (153), Expect = 6e-12
Identities = 52/308 (16%), Positives = 111/308 (36%), Gaps = 25/308 (8%)
Query: 5 SVVDHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIV 64
S V CL TL GH V S + DN + S + + E + +
Sbjct: 43 SAVTGKCLRTLVGHTGGVWSSQM---------RDNIIISGSTDRTLKVWNAETGECIHTL 93
Query: 65 AVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMP 124
V+ + + ++ S +D +RVW I + H +A + + +++
Sbjct: 94 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG 153
Query: 125 KNHVQIR----RHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ +TC +L D + S S D +I++W C+ ++
Sbjct: 154 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL 213
Query: 181 TNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240
T H + + L D+ + +G+AD +K+W L + + L
Sbjct: 214 TG-HQSLTSGMELKDNI-LVSGNADSTVKIWDI---KTGQCLQTLQGPNKHQSAVTCLQF 268
Query: 241 DGSVLYSGACDRSIIVWEKEEDDG-NILVVGALRGHTKSILCMAVVSD--LVCSGSADKT 297
+ + + + + D ++ +W+ + + LV G + + + + GS + T
Sbjct: 269 NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328
Query: 298 ----IRIW 301
+ +
Sbjct: 329 EETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 5e-09
Identities = 46/218 (21%), Positives = 79/218 (36%), Gaps = 26/218 (11%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY 200
H D V L + S S D T+K+W KCL ++ H + + + D+ +
Sbjct: 15 HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRDNIIIS 72
Query: 201 TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKE 260
+ + + + + SG+ D ++ VW+ E
Sbjct: 73 GSTDRTLKVWNAETGECIHT-------LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 125
Query: 261 EDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320
+ L GH ++ C+ V SG+ D +++W TCL L+GH
Sbjct: 126 TGQCLHV----LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP--ETETCLHTLQGHT-- 177
Query: 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358
+ D ++V SGSLD I+VW +
Sbjct: 178 --------NRVYSLQFDGIHVV-SGSLDTSIRVWDVET 206
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 262 DDGNILVVGALRGHTKSIL-CMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320
G + L+GH ++ C+ + + SGS D T+++W CL L GH G
Sbjct: 2 RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSA--VTGKCLRTLVGHTGG 59
Query: 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLVR 362
V + S+D + V + I VR
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR 101
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 5e-06
Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 13/187 (6%)
Query: 169 WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLER 228
WR + K + + HDD + + +GS D +KVW G L
Sbjct: 1 WRRGELKSPKVLK-GHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR----TLVG 55
Query: 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDL 288
H G+ + + + + S + E E + GHT ++ CM +
Sbjct: 56 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL------YGHTSTVRCMHLHEKR 109
Query: 289 VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD 348
V SGS D T+R+W CL VL GH V+C+ + D V +
Sbjct: 110 VVSGSRDATLRVWD--IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 167
Query: 349 CDIKVWQ 355
+ Q
Sbjct: 168 TCLHTLQ 174
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.5 bits (194), Expect = 2e-17
Identities = 53/306 (17%), Positives = 93/306 (30%), Gaps = 20/306 (6%)
Query: 1 QHNLSVVDHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSN 60
+H+L + + V L + + +G DN ++ WD NT E + +
Sbjct: 2 RHSLQRIHCR-----SETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECKRILTGH 54
Query: 61 NNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIK 120
V + + ++ + D + +
Sbjct: 55 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKD 114
Query: 121 LLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
+ + T V + + D+ + S S DRTIK+W TS + + ++
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174
Query: 181 TNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240
D V +GS+D I++W G +
Sbjct: 175 NGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRV------LEGHEELVRCIRF 226
Query: 241 DGSVLYSGACDRSIIVW-----EKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD 295
D + SGA D I VW L + L H+ + + + S S D
Sbjct: 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHD 286
Query: 296 KTIRIW 301
TI IW
Sbjct: 287 DTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 1e-07
Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 16/149 (10%)
Query: 115 GDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF 174
GDR IK+ +R + L+ S S D TI++W
Sbjct: 156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-------DRLVVSGSSDNTIRLWDIECG 208
Query: 175 KCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHS-----LVDVLERH 229
CL + + + D+ + +G+ D KIKVW + + L H
Sbjct: 209 ACLRVLEGHEE--LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 266
Query: 230 NSGINALALSCDGSVLYSGACDRSIIVWE 258
+ + L D + S + D +I++W+
Sbjct: 267 SGRVFRLQ--FDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 5e-05
Identities = 60/256 (23%), Positives = 85/256 (33%), Gaps = 62/256 (24%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY 200
V L D+ + S D TIKIW + +C +T H ++ + + +
Sbjct: 14 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQYDERVIIT 70
Query: 201 TGS---------------------------------------ADKKIKVWRRSPGNKKHS 221
S D+ I VW +
Sbjct: 71 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130
Query: 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC 281
VL H + +N + V SG DR+I VW + V L GH + I C
Sbjct: 131 -RRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVW----NTSTCEFVRTLNGHKRGIAC 183
Query: 282 MAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYL 341
+ LV SGS+D TIR+W CL VLEGH +
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWD--IECGACLRVLEGHE-----------ELVRCIRFDNKR 230
Query: 342 VCSGSLDCDIKVWQIS 357
+ SG+ D IKVW +
Sbjct: 231 IVSGAYDGKIKVWDLV 246
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 2e-04
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 5 SVVDHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWD 45
+ CL TL H+ V L + + S D+ + WD
Sbjct: 253 APAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.3 bits (162), Expect = 3e-13
Identities = 34/301 (11%), Positives = 92/301 (30%), Gaps = 29/301 (9%)
Query: 11 CLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGA 70
L T+ GHN +++L + L +GS D + W ++ +
Sbjct: 5 VLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMHQDH--------------SNL 48
Query: 71 VKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQI 130
+ SL + +S+ + + + G A+ +
Sbjct: 49 IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANND-GFTAVLTNDDDLLILQ 107
Query: 131 RRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINA 190
+++ + + + TI++++ SD + + +
Sbjct: 108 SFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY 167
Query: 191 VALSDDGDVYTGSADKKIKVWRRSPGNK--------KHSLVDVLERHNSGINALALSCDG 242
+++S + + + S ++ + + A +
Sbjct: 168 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 227
Query: 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIW 301
++ +G+ D +I ++ + ++ AL H + + + + S AD I+ W
Sbjct: 228 DLVATGSLDTNIFIYSVKRPMK---IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRW 284
Query: 302 R 302
Sbjct: 285 N 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 5e-07
Identities = 45/290 (15%), Positives = 70/290 (24%), Gaps = 17/290 (5%)
Query: 68 KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKY-TRLATLPTLGDRAIKLLMPKN 126
+ +L V + L S D +I W ++ DH L +
Sbjct: 13 NKGITALTV--NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK--AQEYSSISWDDT 68
Query: 127 HVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD 186
K A + L S +A
Sbjct: 69 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL 128
Query: 187 AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY 246
+ N VA+ + + + S A G +L
Sbjct: 129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL 188
Query: 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDR 306
R + I + + + DLV +GS D I I+ + R
Sbjct: 189 YDLQSREVKTSRWAFRTSKINAISWKPAEKGAN-EEEIEEDLVATGSLDTNIFIYS-VKR 246
Query: 307 NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
+ L H+ V L S LV S D IK W +
Sbjct: 247 PMKIIKALNAHKDGVNNLL---------WETPSTLV-SSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (89), Expect = 5e-04
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 264 GNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKC 323
G+ V+ + GH K I + V + + SGS D I W ++ + H +
Sbjct: 1 GHDEVLKTISGHNKGITALTV--NPLISGSYDGRIMEWS-------SSSMHQDHSNLIVS 51
Query: 324 LA 325
L
Sbjct: 52 LD 53
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.2 bits (157), Expect = 2e-12
Identities = 39/299 (13%), Positives = 77/299 (25%), Gaps = 28/299 (9%)
Query: 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSL 74
H V ++ ++ + +YTG V+ WD + ++ L N ++S
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLN----RDNYIRSC 103
Query: 75 VVLAD----------KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMP 124
+L D S LA P
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 125 KNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH 184
V ++T A + + + + + +
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF 223
Query: 185 DDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244
I ++ G+ + K+ L H S + +L + G
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY----QLHLHESCVLSLKFAYCGKW 279
Query: 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301
S D + W G + + S+L + D + +GS DK ++
Sbjct: 280 FVSTGKDNLLNAWRT--PYGASIF---QSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 1e-10
Identities = 32/251 (12%), Positives = 71/251 (28%), Gaps = 8/251 (3%)
Query: 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
++Y+ S L G L G + + WD + + E S+
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
+ S V + + + Q H + G + +
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
+ H +L T + + + K + + H+ +
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV 268
Query: 189 NAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247
++ + G + D + WR G + +S + + +S D + +
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISVDDKYIVT 323
Query: 248 GACDRSIIVWE 258
G+ D+ V+E
Sbjct: 324 GSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 9e-07
Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 4/123 (3%)
Query: 137 TWVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD 195
+ +T D + D I + + ++ H + + AV +S+
Sbjct: 4 QGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL--NHGEVVCAVTISN 61
Query: 196 DGDVYTGSADKKIKVWRRSPGNKKHSLVDV-LERHNSGINALALSCDGSVLYSGACDRSI 254
+KVW S K + + ++ I + L DG L G ++
Sbjct: 62 PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121
Query: 255 IVW 257
+W
Sbjct: 122 SIW 124
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 2e-05
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 191 VALSDDGDVY--TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248
++ DG + D I + ++L H + A+ +S +Y+G
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-----NHGEVVCAVTISNPTRHVYTG 69
Query: 249 ACDRSIIVWE-KEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID 305
+ VW+ + + + I ++ D + G T+ IW
Sbjct: 70 -GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128
Query: 306 RNYTC 310
Sbjct: 129 PTPRI 133
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 1e-04
Identities = 28/282 (9%), Positives = 59/282 (20%), Gaps = 48/282 (17%)
Query: 113 TLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS 172
T G +K+ + ++ + + + L D L T+ IW +
Sbjct: 68 TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127
Query: 173 D--------FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD 224
A + ++ +
Sbjct: 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 187
Query: 225 VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVV--------------- 269
++ N G D +V + + L
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN 247
Query: 270 -----------GALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEG 316
L H +L + S D + W Y
Sbjct: 248 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW---RTPYGASIFQSK 304
Query: 317 HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358
V ++D+ + +GS D V+++ +
Sbjct: 305 ESSSVLSCDISVDDK---------YIVTGSGDKKATVYEVIY 337
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.1 bits (154), Expect = 5e-12
Identities = 33/343 (9%), Positives = 91/343 (26%), Gaps = 38/343 (11%)
Query: 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFL---------- 58
+ + Y+S + + L S D + + + + +D
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 59 --SNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGD 116
+N + + G V+ ++ D + S + +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122
Query: 117 RAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176
+ + K + + + + L + ++ +R +
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182
Query: 177 LESITNAHDDAIN----AVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV------- 225
A+ + S D ++ V ++
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242
Query: 226 ----LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC 281
+N++ S LY+ D I W + + + + S++
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK---KIKNFAKFNEDSVVK 299
Query: 282 MAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324
+A +++C ++D T + ID+ +E + + +
Sbjct: 300 IACSDNILCLATSDDTFKTNAAIDQT------IELNASSIYII 336
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.9 bits (143), Expect = 1e-10
Identities = 45/370 (12%), Positives = 101/370 (27%), Gaps = 45/370 (12%)
Query: 13 TTLKGHNSYV-SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQE----------FLSNN 61
TTL+GH + V + L ++ TG+ D +R +D L +
Sbjct: 6 TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 62 NIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTR-------------L 108
+V+ + + + + + + L
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 109 ATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168
++ D + P + V S ++ ++ S S+D T+ +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 169 WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLER 228
W + KCL ++ D + + + + S D I++W G ++L
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245
Query: 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDL 288
+ + + + +I V ++
Sbjct: 246 VG---------LLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI 296
Query: 289 VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD 348
+ SGS + I+ + A + + + LV + D
Sbjct: 297 LVSGS-ENQFNIYN-LRSGKLVHANILKDADQIWSVNF----------KGKTLVAAVEKD 344
Query: 349 CDIKVWQISF 358
+ + F
Sbjct: 345 GQSFLEILDF 354
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.5 bits (142), Expect = 1e-10
Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 2/164 (1%)
Query: 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT-NAHDDAINAVALSDDGD 198
V+ +S A KD T + + + I+ S K ++ H+ + V + D +
Sbjct: 5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64
Query: 199 -VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257
+ T D+ VW K +LV + + A + + SG+ SI +
Sbjct: 65 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124
Query: 258 EKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW 301
E+E D + T L S L+ +GS D RI+
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.6 bits (137), Expect = 8e-10
Identities = 43/372 (11%), Positives = 95/372 (25%), Gaps = 58/372 (15%)
Query: 22 VSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD 79
+S A + +++EV ++ + E + G V + D
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-------NGQVTGVDWAPD 62
Query: 80 --KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRR----- 132
++ + D VW + + R R
Sbjct: 63 SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122
Query: 133 ---------HKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD---------- 173
V +L + LL + S D +I+
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182
Query: 174 -------FKCLESITNAHDDAINAVALSDDGDVYT-GSADKKIKVWRRSPGNKKHSLVDV 225
F L +++ ++ V S +G S D + +
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA----T 238
Query: 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285
L + A+ + S++ +G D +++ + G + G L +S +
Sbjct: 239 LASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ--RGL 295
Query: 286 SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345
+ + DK + H+ V ++ C+
Sbjct: 296 TARERFQNLDKKASSE---GSAAAGAGLDSLHKNSVSQISVL-----SGGKAKCSQFCTT 347
Query: 346 SLDCDIKVWQIS 357
+D + +W +
Sbjct: 348 GMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.6 bits (132), Expect = 3e-09
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 10/173 (5%)
Query: 186 DAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244
+ I+ A + D + + ++ ++ +S K V L+ HN + + + D +
Sbjct: 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGN--KWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGI 304
+ + DR+ VW + +V + A GS + I I
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 305 DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
N + L+ D S L+ +GS D +++
Sbjct: 126 QENDWWVCKHIKKPIRSTVLS-------LDWHPNSVLLAAGSCDFKCRIFSAY 171
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 275 HTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR 332
+ I C A D + + + I+ + + L+ H G V +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW------ 59
Query: 333 CDSSDTSYLVCSGSLDCDIKVWQ 355
+ D++ +V + D + VW
Sbjct: 60 --APDSNRIV-TCGTDRNAYVWT 79
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.1 bits (138), Expect = 4e-10
Identities = 54/302 (17%), Positives = 106/302 (35%), Gaps = 19/302 (6%)
Query: 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
GHN +++L+ + GK L++ ++ + SWD +T S + I +
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI-- 61
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
LF+ D ++V D K A+
Sbjct: 62 -----KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 116
Query: 129 QIRRHKTC------TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN 182
+H T V S +AL+ D+ + D + +++ S E T
Sbjct: 117 ACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI 176
Query: 183 AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242
H I +VA S++G + + + N + + + H + + ++ S D
Sbjct: 177 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 236
Query: 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRI 300
L +G+ D S+IVW + + +++ H S + + + + S D I+
Sbjct: 237 VRLATGSLDNSVIVWNMNKPSDHPIII--KGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
Query: 301 WR 302
W
Sbjct: 295 WN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.1 bits (112), Expect = 7e-07
Identities = 35/304 (11%), Positives = 78/304 (25%), Gaps = 29/304 (9%)
Query: 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPK 125
A+ +L AD LFSA + I W I+ P + I +
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGIS-------NRVFPDVHATMITGIKTT 64
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185
+ + + V A + + S + + D +
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124
Query: 186 DAINAVALSDDGDVYTGSA-----------DKKIKVWRRSPGNKKHSLVDVLERHNSGIN 234
+ + + A + KV S V + +
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184
Query: 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSA 294
+ ++ + + I + + + + + + +GS
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244
Query: 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354
D ++ +W + + + H + + +V S D +IK W
Sbjct: 245 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI--------WLNETTIV-SAGQDSNIKFW 295
Query: 355 QISF 358
+ F
Sbjct: 296 NVPF 299
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 2e-04
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSIL 280
S+ V HN I AL+ S DG L+S + I W+ I H I
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST---GISNRVFPDVHATMIT 59
Query: 281 CMAVVSDL-VCSGSADKTIRIWR 302
+ S + + S D +++
Sbjct: 60 GIKTTSKGDLFTVSWDDHLKVVP 82
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 56.4 bits (134), Expect = 2e-09
Identities = 24/310 (7%), Positives = 65/310 (20%), Gaps = 33/310 (10%)
Query: 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSL 74
+ + K + + + + + ++ + N+ A+G
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 75 VVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHK 134
V+A+ F + T A + +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 135 TCTWVH-----------HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN- 182
A A D LY +S+ + +
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219
Query: 183 -----AHDDAINAVALSDDG----DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233
+ N L D + + + ++ LE
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 234 NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCS 291
+ + ++ ++ + + ++ + + +D V
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKT--------RKVTEVKNNLTDLRLSADRKTVMV 331
Query: 292 GSADKTIRIW 301
D I +
Sbjct: 332 RKDDGKIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 48.7 bits (114), Expect = 5e-07
Identities = 22/215 (10%), Positives = 50/215 (23%), Gaps = 33/215 (15%)
Query: 9 HHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
T + + Y + K LY S + S D + + S ++ +
Sbjct: 170 KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV--SKPFVIPLIP 227
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
G+ ++ + S + + + + P N
Sbjct: 228 GSPNPTKLVPRSMTSE--AGEYDLNDMYKRS-----------------------SPINVD 262
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
+ S + + + K + +
Sbjct: 263 PGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-----TEVKNNL 317
Query: 189 NAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL 222
+ LS D V D KI + + ++
Sbjct: 318 TDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 55.5 bits (132), Expect = 3e-09
Identities = 18/216 (8%), Positives = 44/216 (20%), Gaps = 4/216 (1%)
Query: 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSAD 205
AL + ++ + + + +S ++ D Y +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 206 KKIKVWRRSPGNKKHSLVDVL--ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263
I + + A+S DG +Y+ +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 264 GNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKC 323
+ V G + + V A ++ Y + +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 324 LAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359
+ S + + F
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK 217
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.4 bits (116), Expect = 3e-07
Identities = 21/255 (8%), Positives = 51/255 (20%), Gaps = 20/255 (7%)
Query: 9 HHCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAV 66
+ + + S A+ GK +Y + + + L+ ++
Sbjct: 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 137
Query: 67 GKGAV----KSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLL 122
+ L+ AD I + + R +R
Sbjct: 138 VRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN------WNRKGYSA 191
Query: 123 MPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN 182
+ + + D+ + K
Sbjct: 192 PDVLYFWPHQSPRHEFSMLYTIARF---KDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 248
Query: 183 AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242
+ S ++ + + + +A G
Sbjct: 249 DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA-----NLDHTYYCVAFDKKG 303
Query: 243 SVLYSGACDRSIIVW 257
LY G + V+
Sbjct: 304 DKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (89), Expect = 6e-04
Identities = 10/108 (9%), Positives = 30/108 (27%), Gaps = 7/108 (6%)
Query: 81 LFSAHQDHKIRVWKINNQEPDHQKYTR----LATLPTLGDRAIKLLMPKNHVQI---RRH 133
+A + + + Q++ T ++ N + ++
Sbjct: 223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQR 282
Query: 134 KTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT 181
K + +A K LY + ++ + +++I
Sbjct: 283 KLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.4 bits (126), Expect = 1e-08
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 125 KNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH 184
+ + V H +V L + D T + S S D+TIKIW + K ++I
Sbjct: 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 280
Query: 185 DDAINAVALSDDGD-VYTGSADKKIKVW 211
+ + + + SA+ I
Sbjct: 281 RIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.5 bits (103), Expect = 1e-05
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 7/91 (7%)
Query: 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSG 292
L + G + S+ G++ H+ SG
Sbjct: 22 VLGNTPAGDKIQY-CNGTSVYTV----PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76
Query: 293 SADKTIRIWRGIDRNYTCLAVLEGHRGPVKC 323
+RIW + + GPVK
Sbjct: 77 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 2e-04
Identities = 32/302 (10%), Positives = 65/302 (21%), Gaps = 42/302 (13%)
Query: 5 SVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNN 62
V H+ + + G + +G VR WD + L
Sbjct: 44 PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI----- 98
Query: 63 IVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLL 122
+ + + +
Sbjct: 99 --------------------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138
Query: 123 MPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN 182
Q R + + + ++ + + N
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198
Query: 183 AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242
+ +Y G K V+ H+ + L S DG
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA--------HSGSVFGLTWSPDG 250
Query: 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK---SILCMAVVSDLVCSGSADKTIR 299
+ + S + D++I +W V + T+ L + + S SA+ I
Sbjct: 251 TKIASASADKTIKIWNVATLK----VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 306
Query: 300 IW 301
Sbjct: 307 FV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.9 bits (91), Expect = 3e-04
Identities = 11/87 (12%), Positives = 21/87 (24%), Gaps = 7/87 (8%)
Query: 171 TSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHN 230
T+ F L + + GD + ++ H+
Sbjct: 6 TALFPSLPRTARGT---AVVLGNTPAGDKIQYCNGTSVYTVPVGSLT----DTEIYTEHS 58
Query: 231 SGINALALSCDGSVLYSGACDRSIIVW 257
S G SG ++ +W
Sbjct: 59 HQTTVAKTSPSGYYCASGDVHGNVRIW 85
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.8 bits (83), Expect = 0.003
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 12/70 (17%)
Query: 286 SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGH-RGPVKCLAAAIDNDRCDSSDTSYLVCS 344
+ S SADKTI+IW + R + L + S
Sbjct: 250 GTKIASASADKTIKIWNV--ATLKVEKTIPVGTRIEDQQLGIIWTKQA---------LVS 298
Query: 345 GSLDCDIKVW 354
S + I
Sbjct: 299 ISANGFINFV 308
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 7e-07
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 3/89 (3%)
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT---N 182
V D +V D TI++W + KC++ T
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 183 AHDDAINAVALSDDGDVYTGSADKKIKVW 211
+ V + +G + + S D + +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 4e-06
Identities = 37/350 (10%), Positives = 86/350 (24%), Gaps = 44/350 (12%)
Query: 13 TTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFL--SNNNIVAVGKGA 70
+T + +++S Y VR D +F ++ + V
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 71 VKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQI 130
+K L S + K+ VW + + +
Sbjct: 74 IKGSQYLC----SGDESGKVIVWGWTFDKESNS--------------------------V 103
Query: 131 RRHKTCTWVHHVDAVSALALTKD--ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
+ + +S ++ + + D L ++
Sbjct: 104 EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN 163
Query: 189 NAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248
D V+ + P K + + S + + S D
Sbjct: 164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT 223
Query: 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDR 306
I + + + + + + D + AD TIR+W
Sbjct: 224 VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV--T 281
Query: 307 NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + + + + + + S SLD + +++
Sbjct: 282 TSKCVQKWTLDKQQLGNQQVGV------VATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (83), Expect = 0.003
Identities = 25/254 (9%), Positives = 60/254 (23%), Gaps = 48/254 (18%)
Query: 152 KDETLLYSVSWDRTIKIWRTSD--FKCLESITNAHDDAINAVALSDDGD---VYTGSADK 206
+ Y ++ D + T + V S + +G
Sbjct: 28 TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG 87
Query: 207 KIKVWRRSPGNKKHSLVDVLER----HNSGINALALSCDGS--VLYSGACDRSIIVWEKE 260
K+ VW + + +S+ ++ I+ ++ +G + D + +
Sbjct: 88 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 147
Query: 261 EDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320
+ V G + L + + G + +
Sbjct: 148 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 207
Query: 321 VKCLAAAIDNDR-------------------------------------CDSSDTSYLVC 343
V+ + + D+ S S
Sbjct: 208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 267
Query: 344 SGSLDCDIKVWQIS 357
+ D I+VW ++
Sbjct: 268 TVGADATIRVWDVT 281
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 43/350 (12%), Positives = 73/350 (20%), Gaps = 64/350 (18%)
Query: 3 NLSVVD---HHCLTTLKGHNSYVSSLALAGKFLYT----------GSSDNEVRSWDCNTF 49
V+D + + G +A G F+ G + V +D T
Sbjct: 29 QQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT- 87
Query: 50 SSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLA 109
+ +V ++ + L
Sbjct: 88 ----------LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE 137
Query: 110 TLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIW 169
K ++ C + + +D +L
Sbjct: 138 G--------------KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 183
Query: 170 RTSDFKCLESITNAHDDAINAVALS-DDGDVYTGSADKKIKVWRRSPGNK--------KH 220
E + IN A S G + + KI S G+
Sbjct: 184 TH-----TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238
Query: 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEED-----DGNILVVGALRGH 275
G +A +Y R + D A
Sbjct: 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM 298
Query: 276 TKSILCMAVVSD----LVCSGSADKTIRIWRGIDRNYTCLAVLEGH-RGP 320
I + V D L + DKT+ I + L + GP
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDA--ESGEELRSVNQLGHGP 346
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 36.7 bits (83), Expect = 0.004
Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 115 GDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET--LLYSVSWDRTIKIWRTS 172
R + +L K ++ + + + + +++DE L + D+T+ I
Sbjct: 278 ASRFVVVLDAKTGERLAKFEMGHEIDSI------NVSQDEKPLLYALSTGDKTLYIHDAE 331
Query: 173 DFKCLESITNAHDDAINAVALSDDG 197
+ L S+ + +D G
Sbjct: 332 SGEELRSVNQ-LGHGPQVITTADMG 355
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 46.4 bits (110), Expect = 3e-06
Identities = 30/291 (10%), Positives = 65/291 (22%), Gaps = 34/291 (11%)
Query: 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV 142
S ++RV + P ++ R+ + + + H
Sbjct: 16 SGGHQGEVRVLGV----PSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHH 71
Query: 143 DAVSALALTKDETLLYSVSW-DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDV-- 199
+S D L+ + + R K + + AI+ + L
Sbjct: 72 PHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNY 131
Query: 200 ------YTGSADKKIKVWRRSPGNKKHSLVDVLERH-------NSGINALALSCDGSVLY 246
+ + + +D + ++ G
Sbjct: 132 VFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYAT 191
Query: 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDR 306
S + V + V + + I + G K +
Sbjct: 192 STCYNSERAVDLAGTMRNDRDWVVV--FNVERIAAAVKAGNFKTIGD-SKVPVVD--GRG 246
Query: 307 NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
+ + P S D Y + +G L + V I
Sbjct: 247 ESEFTRYIPVPKNPHGLNT---------SPDGKYFIANGKLSPTVSVIAID 288
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.9 bits (99), Expect = 4e-05
Identities = 28/302 (9%), Positives = 71/302 (23%), Gaps = 52/302 (17%)
Query: 2 HNLSVVD---HHCLTTLKGHNSYVSSLALA----GKFLY-TGSSDNEVRSWDCNTF---- 49
L V+D + ++ + + G+ Y T + + D T
Sbjct: 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG 70
Query: 50 -----------SSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQ 98
S + +A+ + V+ + + + +
Sbjct: 71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA 130
Query: 99 EPDHQKYTRLATLPTLG-------DRAIKLLMPKNHVQIRRHKTCTWVH----------- 140
++ T LA D + V+ + ++
Sbjct: 131 FEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190
Query: 141 -----HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD 195
V A KD ++ + + D + A++
Sbjct: 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250
Query: 196 DGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255
A ++ + + ++ +S DGS ++ G +
Sbjct: 251 AK-TRAFGAYNVLESFDLEKNASIKRV-----PLPHSYYSVNVSTDGSTVWLGGALGDLA 304
Query: 256 VW 257
+
Sbjct: 305 AY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 24/328 (7%), Positives = 62/328 (18%), Gaps = 26/328 (7%)
Query: 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK---LFSAHQ 86
++ + +++ D I G +V + ++
Sbjct: 2 DYILAPARPDKLVVIDTEKM------AVDKVITIADAGPT-PMVPMVAPGGRIAYATVNK 54
Query: 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVS 146
+ + E + L + I + H +
Sbjct: 55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114
Query: 147 ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADK 206
D L + + S ++ + V
Sbjct: 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQS 174
Query: 207 KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI 266
P D A ++ + +
Sbjct: 175 WEAETYAQPDVLAVW-NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM---DLETGE 230
Query: 267 LVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAA 326
+ + +R AV + A + + + + +
Sbjct: 231 MAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDL--EKNASIKRVP-LPHSYYSVNV 287
Query: 327 AIDNDRCDSSDTSYLVCSGSLDCDIKVW 354
S+D S + G D+ +
Sbjct: 288 --------STDGSTVW-LGGALGDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.4 bits (90), Expect = 4e-04
Identities = 9/128 (7%), Positives = 31/128 (24%), Gaps = 9/128 (7%)
Query: 78 ADKLFSAHQDHKIRVWKINNQEP------DHQKYTRLATLPTLGDRAIKLLMPKNHVQIR 131
D + + E + + RA +
Sbjct: 209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLE 268
Query: 132 RHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT---NAHDDAI 188
++ + V + ++ ++ D + ++ + + + + NA
Sbjct: 269 KNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328
Query: 189 NAVALSDD 196
+ + D
Sbjct: 329 SVRLFTRD 336
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 23/239 (9%), Positives = 62/239 (25%), Gaps = 12/239 (5%)
Query: 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV---DAVSALA 149
WK+ + + L + L + + + V + AV
Sbjct: 11 WKVLV--KPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISR 68
Query: 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLESIT----NAHDDAINAVALSDDGDVYTGSAD 205
++ L + D I + + + ++ + A
Sbjct: 69 MSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY 128
Query: 206 KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGN 265
+ + ++ ++ + V A ++ G
Sbjct: 129 WPPQFAIMDG--ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 186
Query: 266 ILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324
+L+V ++ + + + G D + R + N +AV++ + L
Sbjct: 187 VLLVNYKDIDNLTVTSIG-AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL 244
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 36.9 bits (84), Expect = 0.003
Identities = 41/344 (11%), Positives = 91/344 (26%), Gaps = 62/344 (18%)
Query: 2 HNLSVVD---HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQE 56
+++VD + + + V ++ G++L D + D E
Sbjct: 42 GQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE 100
Query: 57 FLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGD 116
+V K + A+ + + EP TR T+ T
Sbjct: 101 IKIGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT--- 156
Query: 117 RAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD-RTIKIWRTSDFK 175
H V+A+ + + + + + D
Sbjct: 157 --------------------QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 196
Query: 176 CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER------ 228
L + + T + + S + +LVDV +
Sbjct: 197 NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG 256
Query: 229 ------HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSIL-- 280
+ + + DGS+ G ++ + + V L+G L
Sbjct: 257 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK-------KVAELQGQGGGSLFI 309
Query: 281 -------CMAVVSDLVCSGSADKTIRIW--RGIDRNYTCLAVLE 315
+ V + +++ ++ + +D Y L + E
Sbjct: 310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 353
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (89), Expect = 0.001
Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 42/242 (17%)
Query: 2 HNLSVVD---HHCLTTLKGHNS-YVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEF 57
++++D + T L + ++S L+ +G++L+ D +V D E
Sbjct: 42 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE- 100
Query: 58 LSNNNIVAVGK---GAVKSLVVLADK---LFSAHQDHKIRVWKINNQEPDHQKYTRLATL 111
+ +G S + + + A+ + + EP + TR T
Sbjct: 101 ------IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 154
Query: 112 PTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY-SVSWDRTIKIWR 170
H V+A+ + +V I +
Sbjct: 155 DEQE-----------------------YHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191
Query: 171 TSDFKCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERH 229
+D L++ + + ++ L T + + V + K ++ D +
Sbjct: 192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 251
Query: 230 NS 231
Sbjct: 252 PH 253
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (87), Expect = 0.001
Identities = 11/107 (10%), Positives = 36/107 (33%), Gaps = 4/107 (3%)
Query: 154 ETLLYSVSWDRTIKIWRTSDFKCLESI-TNAHDDAINAVALSDDGD-VY-TGSADKKIKV 210
+T+ + + I +W + L + + +S D +Y + ++
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63
Query: 211 WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257
+R +P + + + ++ G ++ G+ + +
Sbjct: 64 YRIAPDDGALTFAAE-SALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 36.2 bits (82), Expect = 0.004
Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 123 MPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW-DRTIKIWRTSDFKCLESI- 180
+ + + + + + + + + +L + + + + I+ T D + + ++
Sbjct: 180 VKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF-TQDGQLISALE 238
Query: 181 TNAHDDAINAVALSDDGDVYTGSADKKIKVWRR 213
+ VAL DDG V S D ++ ++R
Sbjct: 239 SKVKHAQCFDVALMDDGSVVLASKDYRLYIYRY 271
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 362 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.98 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.84 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.84 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.84 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.82 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.82 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.81 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.75 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.7 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.6 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.6 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.56 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.55 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.41 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.33 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.28 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.14 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.1 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.92 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.88 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.77 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.69 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.66 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.59 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.57 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.43 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.41 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.37 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.33 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.03 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.97 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.82 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.66 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.31 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.21 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.02 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.85 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.73 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 95.9 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 95.52 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.98 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.57 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 92.38 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 91.84 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 91.7 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.81 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 89.38 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 86.3 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 85.23 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 85.19 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 83.13 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 81.55 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 80.93 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-39 Score=288.94 Aligned_cols=288 Identities=19% Similarity=0.339 Sum_probs=228.8
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
+++++| +|...|++++|+ +++|+||+ ||.|+|||+........... .....|.+.|.++.+.++ .|++++
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~----~~~~~h~~~I~~v~~s~dg~~l~s~~ 116 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ----LDCLNRDNYIRSCKLLPDGCTLIVGG 116 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE----EECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEE----eeecCCCCcEEEEEEcCCCCEEEEee
Confidence 566677 899999999995 78999997 89999999876432111110 011124567899998765 599999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.|++|++||+...... ....+..|...+.+++++|++.++++++.|+.
T Consensus 117 ~dg~i~iwd~~~~~~~--------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 164 (337)
T d1gxra_ 117 EASTLSIWDLAAPTPR--------------------------------IKAELTSSAPACYALAISPDSKVCFSCCSDGN 164 (337)
T ss_dssp SSSEEEEEECCCC--E--------------------------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccccccccccccc--------------------------------cccccccccccccccccccccccccccccccc
Confidence 9999999998643210 01122357788999999999999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCE
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 244 (362)
|++|++.++++..... .|...|.+++|++++. +++++.||.|++||+.++..... ..|..+|.+++|+|++.+
T Consensus 165 i~~~~~~~~~~~~~~~-~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~-----~~~~~~i~~l~~~~~~~~ 238 (337)
T d1gxra_ 165 IAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-----HDFTSQIFSLGYCPTGEW 238 (337)
T ss_dssp EEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-----EECSSCEEEEEECTTSSE
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccccceeecc-----cccccceEEEEEcccccc
Confidence 9999999998777654 7899999999999986 78899999999999987643221 247889999999999999
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEE
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVK 322 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~ 322 (362)
|++|+.|+.|++||+...+. .....|...|.+++|+++ ++++++.|+.|++|+... .+++..+ +|.+.|.
T Consensus 239 l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~--~~~~~~~-~~~~~v~ 310 (337)
T d1gxra_ 239 LAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--GASIFQS-KESSSVL 310 (337)
T ss_dssp EEEEETTSCEEEEETTSSCE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEE-ECSSCEE
T ss_pred cceecccccccccccccccc-----ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCC--CCEEEEc-cCCCCEE
Confidence 99999999999999986432 235678999999999865 899999999999999643 4445554 4889999
Q ss_pred EEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+++|+|++ .+|++||.||+|+|||+-|
T Consensus 311 ~~~~s~d~---------~~l~t~s~D~~I~vWdl~~ 337 (337)
T d1gxra_ 311 SCDISVDD---------KYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp EEEECTTS---------CEEEEEETTSCEEEEEEEC
T ss_pred EEEEeCCC---------CEEEEEeCCCeEEEEEEEC
Confidence 99998654 4699999999999999854
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-38 Score=277.14 Aligned_cols=282 Identities=25% Similarity=0.413 Sum_probs=230.4
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~ 86 (362)
..++|+||.++|++|+|+ +++|||||.||+||+||+++.. .... +..|...|.++.+.++ .+++++.
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~--~~~~-------~~~h~~~V~~~~~~~~~~~~~~~~~ 79 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERT-------LKGHTDSVQDISFDHSGKLLASCSA 79 (317)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEE-------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--EEEE-------EeCCCCcEEEEeeeccccccccccc
Confidence 346799999999999995 7899999999999999987643 2211 2335677888888765 4888889
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
++.+..|+....... .....|...+.++.++|+++.+++++.|+.+
T Consensus 80 ~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 125 (317)
T d1vyhc1 80 DMTIKLWDFQGFECI----------------------------------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125 (317)
T ss_dssp TSCCCEEETTSSCEE----------------------------------ECCCCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred ccccccccccccccc----------------------------------cccccccccceeeeccCCCceEEeeccCcce
Confidence 999999987543210 0112467788999999999999999999999
Q ss_pred EEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC----
Q 044557 167 KIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD---- 241 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~---- 241 (362)
++||+++++.+..+. .|...+.+++++|++. +++++.|+.|++|+..+... ...+..|...+.++.++|+
T Consensus 126 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~ 200 (317)
T d1vyhc1 126 KMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC----KAELREHRHVVECISWAPESSYS 200 (317)
T ss_dssp EEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECCSCGGG
T ss_pred eEeecccceeeeEEc-cCCCcceeeecccCCCEEEEEeCCCeEEEEeecccee----eEEEecCCCCceEEEEeeccccc
Confidence 999999998888775 7889999999999987 78899999999999987643 3344567888888888765
Q ss_pred ----------------CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 242 ----------------GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 242 ----------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
+..+++++.|+.|++|+..++. .+..+.+|...|.+++++++ ++++++.||.|++|+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 276 (317)
T d1vyhc1 201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 276 (317)
T ss_dssp GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred eeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc----EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 4579999999999999987643 45567889999999999764 8999999999999996
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
. ..+++.++.+|.+.|++++|+|++ .+|+|||.||+|+|||
T Consensus 277 ~--~~~~~~~~~~h~~~V~~~~~s~~~---------~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 277 K--NKRCMKTLNAHEHFVTSLDFHKTA---------PYVVTGSVDQTVKVWE 317 (317)
T ss_dssp T--TSCCCEEEECCSSCEEEEEECSSS---------SCEEEEETTSEEEEEC
T ss_pred C--CCcEEEEEcCCCCCEEEEEEcCCC---------CEEEEEeCCCeEEEeC
Confidence 4 356788999999999999998764 3689999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.1e-38 Score=273.26 Aligned_cols=290 Identities=21% Similarity=0.329 Sum_probs=215.5
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEec
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQ 86 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~ 86 (362)
++.+++.||.++|++|+|+ +++|+||+.||+|++||+++.... ..+. ..|...|.++.+.++ .+++++.
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~--~~~~------~~h~~~v~~v~~~~~g~~~~~~~ 74 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN--RVFP------DVHATMITGIKTTSKGDLFTVSW 74 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--ECSS------CSCSSCEEEEEECTTSCEEEEET
T ss_pred ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEc------CCCCCcEEEEEeeccceeecccc
Confidence 5678999999999999995 789999999999999998764321 1111 124567888988776 4889999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
|+.+++|+.......... .....+...+.+++++|+++++++++ ++.+
T Consensus 75 d~~v~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i 122 (299)
T d1nr0a2 75 DDHLKVVPAGGSGVDSSK-------------------------------AVANKLSSQPLGLAVSADGDIAVAAC-YKHI 122 (299)
T ss_dssp TTEEEEECSSSSSSCTTS-------------------------------CCEEECSSCEEEEEECTTSSCEEEEE-SSEE
T ss_pred eeeEEEeccCCccccccc-------------------------------cccccccccccccccccccccccccc-cccc
Confidence 999999997643211000 00123566788999999999877665 6789
Q ss_pred EEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 167 KIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
++|+.... .. . .....+.+++|+|++. +++++.||.|++||+.++.... .....|..+|++++|+|++.+|
T Consensus 123 ~~~~~~~~--~~-~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l 194 (299)
T d1nr0a2 123 AIYSHGKL--TE-V--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKTIVHPAEITSVAFSNNGAFL 194 (299)
T ss_dssp EEEETTEE--EE-E--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEEEECSSCEEEEEECTTSSEE
T ss_pred cccccccc--cc-c--ccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccc
Confidence 99985532 22 2 1334578899999987 7789999999999987653211 1223588999999999999999
Q ss_pred EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCC-CCcEE
Q 044557 246 YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGH-RGPVK 322 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h-~~~v~ 322 (362)
++++.|+.|++||..+.. .......+.+|...|.+++|+++ ++++|+.|+.|++|+.............+| ...|.
T Consensus 195 ~~~~~d~~i~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 273 (299)
T d1nr0a2 195 VATDQSRKVIPYSVANNF-ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN 273 (299)
T ss_dssp EEEETTSCEEEEEGGGTT-EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred cccccccccccccccccc-cccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE
Confidence 999999999999987643 22233456789999999999765 899999999999999755443333344444 45666
Q ss_pred EEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++.+.++ .+|+|||.|++||+||++|
T Consensus 274 ~~~~~~~----------~~l~s~s~D~~i~iWdl~~ 299 (299)
T d1nr0a2 274 SVIWLNE----------TTIVSAGQDSNIKFWNVPF 299 (299)
T ss_dssp EEEEEET----------TEEEEEETTSCEEEEECCC
T ss_pred EEEECCC----------CEEEEEeCCCEEEEEeccC
Confidence 6655432 3588999999999999975
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-37 Score=281.30 Aligned_cols=298 Identities=24% Similarity=0.425 Sum_probs=224.2
Q ss_pred ccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeec-----------cceeEEeecceeEEEEEcCc--e
Q 044557 16 KGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLS-----------NNNIVAVGKGAVKSLVVLAD--K 80 (362)
Q Consensus 16 ~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~i~~~~~--~ 80 (362)
.+|.+.|++|+|+ |++||||+ |++|++||+.+.... ..+.. .......+...|.++.+.++ .
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV--ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE--EEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceE--eeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence 3799999999995 78999986 999999998764321 11100 00111224557888988765 5
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
|++++.||.|++|+...... .....+|...|.++.+++++..++++
T Consensus 136 l~s~~~dg~v~i~~~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~ 181 (388)
T d1erja_ 136 LATGAEDRLIRIWDIENRKI----------------------------------VMILQGHEQDIYSLDYFPSGDKLVSG 181 (388)
T ss_dssp EEEEETTSCEEEEETTTTEE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ceeccccccccccccccccc----------------------------------cccccccccccccccccccccccccc
Confidence 99999999999999864321 11223588899999999999999999
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEc-CCCc-EEEEeCCCeEEEEeCCCCCCcceee---hhhhccccceeE
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALS-DDGD-VYTGSADKKIKVWRRSPGNKKHSLV---DVLERHNSGINA 235 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~-~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~ 235 (362)
+.++.+++||.++........ .+ ....++.++ +++. +++++.||.|++|+..++.....+. .....|..+|.+
T Consensus 182 ~~~~~i~~~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 259 (388)
T d1erja_ 182 SGDRTVRIWDLRTGQCSLTLS-IE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 259 (388)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-CS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred ccceeeeeeeccccccccccc-cc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEE
Confidence 999999999999888766553 33 444555555 4665 7889999999999998776443322 223468899999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcE--------EEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCC
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNI--------LVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~ 305 (362)
++|+|++.+|++++.|+.|++||+....... ........|...|.++++++ .++++|+.||.|++||..
T Consensus 260 l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~- 338 (388)
T d1erja_ 260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK- 338 (388)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT-
T ss_pred EEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECC-
Confidence 9999999999999999999999986533211 12334557888999999975 489999999999999964
Q ss_pred CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 306 RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 306 ~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..+++.++.+|.+.|.++++++.. .+.+++.+|+|||.||+|+||++.
T Consensus 339 -~~~~~~~l~~H~~~V~~~~~~~~~---~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 339 -SGNPLLMLQGHRNSVISVAVANGS---SLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp -TCCEEEEEECCSSCEEEEEECSSC---TTCTTCEEEEEEETTSEEEEEEEE
T ss_pred -CCcEEEEEeCCCCCEEEEEEecCc---ccCCCCCEEEEEeCCCEEEEEeee
Confidence 467789999999999999987542 345677899999999999999985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.1e-36 Score=265.84 Aligned_cols=291 Identities=20% Similarity=0.343 Sum_probs=225.0
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
...+..+||+||.++|++|+|+ +++||||+.||+|++||+.+.. .. ..+..+...|.++.+.++ .++
T Consensus 43 ~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~--~~-------~~~~~~~~~v~~v~~~~~~~~l~ 113 (340)
T d1tbga_ 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN--KV-------HAIPLRSSWVMTCAYAPSGNYVA 113 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE--EE-------EEEECSCSCEEEEEECTTSSEEE
T ss_pred cceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce--eE-------EEEecccccEEeeEeeccceeee
Confidence 4457788999999999999995 7899999999999999987542 11 122345678889988764 589
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|+.+++|+.......... ...+.+|.......... .+..++....
T Consensus 114 ~~~~d~~i~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 162 (340)
T d1tbga_ 114 CGGLDNICSIYNLKTREGNVRV------------------------------SRELAGHTGYLSCCRFL-DDNQIVTSSG 162 (340)
T ss_dssp EEETTCCEEEEESSSSCSCCCE------------------------------EEEECCCSSCEEEEEEE-ETTEEEEEET
T ss_pred eecccceeeccccccccccccc------------------------------ceecccccccccccccc-cccccccccc
Confidence 9999999999997654321100 01112344444444433 4567778889
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
|.....+............ .+...+....+.+.+. +++++.|+.|++||+.++. ....+..|..+|++++|+|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~----~~~~~~~h~~~i~~v~~~p~ 237 (340)
T d1tbga_ 163 DTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----CRQTFTGHESDINAICFFPN 237 (340)
T ss_dssp TTEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE----EEEEECCCSSCEEEEEECTT
T ss_pred ccccccccccccccccccc-ccceeEeeeccccccceeEEeecCceEEEEECCCCc----EEEEEeCCCCCeEEEEECCC
Confidence 9999999988776655443 5667888888888776 7889999999999998764 33445679999999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCC
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG 319 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~ 319 (362)
+.+|++|+.|+.|++|+..... .........|...|.+++++++ ++++|+.||.|++|+.. .++++.++.+|.+
T Consensus 238 ~~~l~s~s~d~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~H~~ 313 (340)
T d1tbga_ 238 GNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL--KADRAGVLAGHDN 313 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETT--TCCEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEeecccc--cccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECC--CCcEEEEEcCCCC
Confidence 9999999999999999997533 2223334567778999999764 89999999999999964 4677899999999
Q ss_pred cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 320 PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+|++++|+|++ .+|+|||.||+|+|||
T Consensus 314 ~V~~l~~s~d~---------~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 314 RVSCLGVTDDG---------MAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECTTS---------SCEEEEETTSCEEEEC
T ss_pred CEEEEEEeCCC---------CEEEEEccCCEEEEeC
Confidence 99999998764 4699999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-36 Score=265.47 Aligned_cols=323 Identities=21% Similarity=0.362 Sum_probs=224.4
Q ss_pred eeccceeeecccCccce-eeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEE
Q 044557 6 VVDHHCLTTLKGHNSYV-SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSA 84 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~~V-~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~ 84 (362)
..+.++.++|+||.+.| .+++++|++|||||.||+|||||+.+.. ... .+..|.+.|.++.+.++.++++
T Consensus 3 ~~~~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~--~~~-------~~~~h~~~V~~v~~~~~~l~s~ 73 (342)
T d2ovrb2 3 RGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGK--CLR-------TLVGHTGGVWSSQMRDNIIISG 73 (342)
T ss_dssp HSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCC--EEE-------ECCCCSSCEEEEEEETTEEEEE
T ss_pred CCCCCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCC--EEE-------EEeCCCCCEEEEEeCCCccccc
Confidence 45678899999999998 4678899999999999999999987643 111 1234677889999999999999
Q ss_pred ecCCcEEEEecCCCCCCcccce---eeeeccCCCchhhhhccccccceeeeeee--eEEeeecCceeEEEEecCCCEEEE
Q 044557 85 HQDHKIRVWKINNQEPDHQKYT---RLATLPTLGDRAIKLLMPKNHVQIRRHKT--CTWVHHVDAVSALALTKDETLLYS 159 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s 159 (362)
+.|+++++|+............ ......... .............+..... ................+....+++
T Consensus 74 s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (342)
T d2ovrb2 74 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS 152 (342)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEE
T ss_pred eecccccccccccccceecccccceeEeeeeccc-ccccccccceeEEEeecccccceeeeecccccceeeccccceeee
Confidence 9999999999865432110000 000000000 0000000011111111100 000111122233344566778999
Q ss_pred EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 160 VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
++.|+.|++||....+++..+. +|...+..+.+. +..+++++.||.|++||+..+.. ......|...+.+++++
T Consensus 153 ~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~s~~~dg~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~ 226 (342)
T d2ovrb2 153 GAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNC----IHTLTGHQSLTSGMELK 226 (342)
T ss_dssp EETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEEC-SSEEEEEETTSCEEEEETTTCCE----EEEECCCCSCEEEEEEE
T ss_pred ecCCCeEEEeecccceeeEEEc-CcccccccccCC-CCEEEEEeCCCeEEEeeccccee----eeEecccccceeEEecC
Confidence 9999999999999988887765 677666655543 23488999999999999987643 33456788888877765
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEe-----
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVL----- 314 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l----- 314 (362)
+++|++++.|+.|++||....+. ...+.....|...+.++.++++++++|+.||+|++|+... +++++.+
T Consensus 227 --~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~t--g~~i~~~~~~~~ 301 (342)
T d2ovrb2 227 --DNILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT--GEFIRNLVTLES 301 (342)
T ss_dssp --TTEEEEEETTSCEEEEETTTCCE-EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT--CCEEEEEEECTT
T ss_pred --CCEEEEEcCCCEEEEEecccccc-cccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCC--CCEEEEEecccC
Confidence 56999999999999999876442 2333344567788899999999999999999999999643 4455554
Q ss_pred cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc----EEEEeccc
Q 044557 315 EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD----IKVWQISF 358 (362)
Q Consensus 315 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~----i~~W~~~~ 358 (362)
.+|...|++++|+|+ +.+|++|+.||+ |++||++.
T Consensus 302 ~~~~~~v~~v~~s~~---------~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 302 GGSGGVVWRIRASNT---------KLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp GGGTCEEEEEEECSS---------EEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCCCEEEEEECCC---------CCEEEEEeCCCCCeeEEEEEeCCC
Confidence 378889999999765 367999999996 99999874
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.3e-36 Score=268.28 Aligned_cols=292 Identities=12% Similarity=0.140 Sum_probs=217.3
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEEE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVW 93 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w 93 (362)
+..+|++++|+ +++||+|+.||.|++||.++..... ...+..|.+.|.++.+.+ +.|++++.|++|++|
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~-------~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vW 78 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-------VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEE-------EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEE-------EEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEE
Confidence 35789999994 7899999999999999976432111 122345778999999875 459999999999999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 173 (362)
+++..... ......+|...|.+++|+|+++.|++|+.|+.|++|+++.
T Consensus 79 d~~~~~~~--------------------------------~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~ 126 (371)
T d1k8kc_ 79 TLKGRTWK--------------------------------PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126 (371)
T ss_dssp EEETTEEE--------------------------------EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred eecccccc--------------------------------cccccccccccccccccccccccceeecccCcceeeeeec
Confidence 98643210 0111235778899999999999999999999999998765
Q ss_pred ce---EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc--------------ceeehhhhccccceeE
Q 044557 174 FK---CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK--------------HSLVDVLERHNSGINA 235 (362)
Q Consensus 174 ~~---~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~--------------~~~~~~~~~h~~~v~~ 235 (362)
.. ........|...|.+++|+|++. +++|+.|++|++|+....... .........|...|.+
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 206 (371)
T d1k8kc_ 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 206 (371)
T ss_dssp TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred ccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEE
Confidence 43 23334557889999999999997 788999999999997654311 1122334568889999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceee--e-
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTC--L- 311 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~--~- 311 (362)
++|+|+|++|++++.|+.|++||+.... .+..+.+|...|.+++|+++ .+++++.|+.+++|......... .
T Consensus 207 ~~~s~~g~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~ 282 (371)
T d1k8kc_ 207 VCFSANGSRVAWVSHDSTVCLADADKKM----AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG 282 (371)
T ss_dssp EEECSSSSEEEEEETTTEEEEEEGGGTT----EEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECC
T ss_pred EEeecccccccccccCCcceEEeeeccc----ceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEee
Confidence 9999999999999999999999998644 34557789999999999765 44455568887777532111000 0
Q ss_pred ------------------------------------eEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 312 ------------------------------------AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 312 ------------------------------------~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
.....|.+.|.++++.+.... ....|+|+|.||.|+|||
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~-----~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 283 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA-----KCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp CCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT-----SCSEEEEEETTSEEEEEE
T ss_pred eecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCc-----ceEEEEEEcCCCeEEEEe
Confidence 001249999999999886431 223689999999999999
Q ss_pred cc
Q 044557 356 IS 357 (362)
Q Consensus 356 ~~ 357 (362)
+.
T Consensus 358 ~~ 359 (371)
T d1k8kc_ 358 VR 359 (371)
T ss_dssp HH
T ss_pred CC
Confidence 84
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4e-35 Score=257.45 Aligned_cols=281 Identities=15% Similarity=0.160 Sum_probs=213.4
Q ss_pred CccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEE
Q 044557 18 HNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVW 93 (362)
Q Consensus 18 H~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w 93 (362)
+.+.+..+++ .|+.|+.++ ++.|.+||+.+.. .. .+...|.+.|.++.+.++ .|++|+.||+|++|
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~--~~-------~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iw 85 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT--DT-------EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW 85 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSS--CC-------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCc--ee-------EEEcCCCCCEEEEEEeCCCCeEeccccCceEeee
Confidence 3444555565 577888874 6779999987543 11 122346778999998764 58999999999999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC--CcEEEEEC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD--RTIKIWRT 171 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d--~~i~iwd~ 171 (362)
++....... ...+..|...|.+++|+|++++|++++.+ +.++||++
T Consensus 86 d~~~~~~~~--------------------------------~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~ 133 (311)
T d1nr0a1 86 DTTQTTHIL--------------------------------KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 133 (311)
T ss_dssp ESSSTTCCE--------------------------------EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred eeecccccc--------------------------------ccccccccCcccccccccccccccccccccccccccccc
Confidence 987643210 01224578899999999999999999864 56999999
Q ss_pred CCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc
Q 044557 172 SDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
++++....+. .|...|.+++|+|++. +++|+.||.|++||+.++. .......|..+|+++.|+|++++|++++
T Consensus 134 ~~~~~~~~l~-~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~----~~~~~~~~~~~i~~v~~~p~~~~l~~~~ 208 (311)
T d1nr0a1 134 DTGTSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK----FKSTFGEHTKFVHSVRYNPDGSLFASTG 208 (311)
T ss_dssp TTCCBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE----EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccccccc-ccccccccccccccceeeecccccccccccccccccc----cccccccccccccccccCcccccccccc
Confidence 9988777664 7899999999999885 6789999999999998653 3445567899999999999999999999
Q ss_pred CCCcEEEEeccCCCCcEEEEE----eecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCC-cEE
Q 044557 250 CDRSIIVWEKEEDDGNILVVG----ALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG-PVK 322 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~----~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~-~v~ 322 (362)
.|+.|++||....... .... ...+|...|.+++|++ .+|++|+.|++|++||.. +.++++++..|.. ...
T Consensus 209 ~d~~v~~~d~~~~~~~-~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~--t~~~~~~l~~~~~~~~~ 285 (311)
T d1nr0a1 209 GDGTIVLYNGVDGTKT-GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA--TLKVEKTIPVGTRIEDQ 285 (311)
T ss_dssp TTSCEEEEETTTCCEE-EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSGGGC
T ss_pred cccccccccccccccc-ccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECC--CCcEEEEEECCCCccce
Confidence 9999999998764321 1111 1346889999999985 489999999999999964 4567888876654 222
Q ss_pred EEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+.+.+++ ..|+++|.||.|++||.+
T Consensus 286 ~~~~~~~~---------~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 286 QLGIIWTK---------QALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEECS---------SCEEEEETTCCEEEEETT
T ss_pred EEEEEecC---------CEEEEEECCCEEEEEeCC
Confidence 33343332 248899999999999974
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-35 Score=267.15 Aligned_cols=316 Identities=16% Similarity=0.175 Sum_probs=208.5
Q ss_pred eecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecce---e---EEEEEcC---ceeEE
Q 044557 13 TTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGA---V---KSLVVLA---DKLFS 83 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~---v---~~i~~~~---~~l~s 83 (362)
...++|.+.|.+|++.+++++|||.|++||+||..+............ ...+... + ..+.... ..+++
T Consensus 8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYS---HFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEE---EECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEe---eeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 457899999999999999999999999999999765432221111000 0001111 1 1111111 13678
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-----CCEEE
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-----ETLLY 158 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~ 158 (362)
++.||+|++|++.................. ...+...+..+++.++ +.+++
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLD------------------------SDMKKHSFWALKWGASNDRLLSHRLV 140 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSC------------------------TTGGGSCEEEEEEECCC----CEEEE
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceee------------------------eccCCCceEEEEEecCCCcccccEEE
Confidence 899999999998654322111100000000 0012334555666554 46899
Q ss_pred EEECCCcEEEEECCCce---------------EEEe--eeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcce
Q 044557 159 SVSWDRTIKIWRTSDFK---------------CLES--ITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~---------------~~~~--~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
+++.|+.+++|++.... .... ....+...+.+++|+|++.+++|+.||+|++||+.+++....
T Consensus 141 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~ 220 (393)
T d1sq9a_ 141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYN 220 (393)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccc
Confidence 99999999999974210 0011 112345568899999999999999999999999987754332
Q ss_pred e--ehhhhccccceeEEEEecCCCEEEEEcCCCc---EEEEeccCCCCcE---------EEEEeecCccceeEEEEEeCC
Q 044557 222 L--VDVLERHNSGINALALSCDGSVLYSGACDRS---IIVWEKEEDDGNI---------LVVGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 222 ~--~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~---i~~wd~~~~~~~~---------~~~~~~~~h~~~v~~~~~~~~ 287 (362)
+ ...+.+|..+|++++|+|||++|++|+.|++ |++||++++.... .....+.+|...|++++|+++
T Consensus 221 ~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd 300 (393)
T d1sq9a_ 221 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300 (393)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred cccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCC
Confidence 2 2345679999999999999999999999975 8999987643211 112234589999999999865
Q ss_pred --eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcE---------------------EEEEeeecCCcc-CCCCCceEEE
Q 044557 288 --LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPV---------------------KCLAAAIDNDRC-DSSDTSYLVC 343 (362)
Q Consensus 288 --~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v---------------------~~~~~~~~~~~~-~~~~~~~~l~ 343 (362)
+|+|+|.|++||+||.. +++++++|.||.+.| +++.|.+.+.+. ........|+
T Consensus 301 ~~~l~S~s~D~~v~vWd~~--~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T d1sq9a_ 301 GETLCSAGWDGKLRFWDVK--TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC 378 (393)
T ss_dssp SSEEEEEETTSEEEEEETT--TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred CCeeEEECCCCEEEEEECC--CCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEE
Confidence 99999999999999964 457899999998665 344444332211 1112334588
Q ss_pred ecCCCCcEEEEecc
Q 044557 344 SGSLDCDIKVWQIS 357 (362)
Q Consensus 344 s~s~D~~i~~W~~~ 357 (362)
+++.|+.||+|.-+
T Consensus 379 ~~~~d~~ir~~~~~ 392 (393)
T d1sq9a_ 379 CVCLDRSIRWFREA 392 (393)
T ss_dssp EEETTTEEEEEEEE
T ss_pred EEEcCCeEEEEeCC
Confidence 99999999999753
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-34 Score=254.49 Aligned_cols=310 Identities=21% Similarity=0.291 Sum_probs=212.4
Q ss_pred eeecccCccce-eeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC-ceeEEEecCCc
Q 044557 12 LTTLKGHNSYV-SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-DKLFSAHQDHK 89 (362)
Q Consensus 12 ~~tl~gH~~~V-~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~s~~~dg~ 89 (362)
..||+||.+.| +|+++++++||||+.||+|++||+.+.. .. ..+..|.+.|.++.+.+ +.|++++.|++
T Consensus 5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~--~~-------~~l~~H~~~V~~l~~s~~~~l~s~s~D~~ 75 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKK--FL-------LQLSGHDGGVWALKYAHGGILVSGSTDRT 75 (355)
T ss_dssp EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTE--EE-------EEEECCSSCEEEEEEETTTEEEEEETTCC
T ss_pred cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCc--EE-------EEEECCCCCEEEEEEcCCCEEEEEecccc
Confidence 46799999885 7899999999999999999999987532 11 12345678899998865 46999999999
Q ss_pred EEEEecCCCCCCcccc------eeeeeccCCCchhhhhccccccceeeee---------------------------eee
Q 044557 90 IRVWKINNQEPDHQKY------TRLATLPTLGDRAIKLLMPKNHVQIRRH---------------------------KTC 136 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~ 136 (362)
|++|++.......... .............+.....++.+.+++. ...
T Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (355)
T d1nexb2 76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 155 (355)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence 9999987543211000 0000000000000000001111111110 000
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCC
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~ 215 (362)
....|...+ ..+.+++++++++..|+.|++||+++++.+.... .+...+.++.++|++. +++++.|+.|++||..+
T Consensus 156 ~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 232 (355)
T d1nexb2 156 VLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 232 (355)
T ss_dssp EEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred eeeeccccc--cccccccceeeeecccceeeeeecccccceeeee-ccccccccccccccceeeecccccceEEeeeccc
Confidence 111233333 3456778999999999999999999998877664 6777889999999886 78899999999999987
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE---EEeCCeEEEe
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM---AVVSDLVCSG 292 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~---~~~~~~~~s~ 292 (362)
+.. ...+..|..+|.+++++ +++|++|+.||.|++||+.+... .+..|...+.++ ...+.++++
T Consensus 233 ~~~----~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~- 299 (355)
T d1nexb2 233 GEL----MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR------KFSYHHTNLSAITTFYVSDNILVS- 299 (355)
T ss_dssp CCE----EEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE------EEEEECTTCCCCCEEEECSSEEEE-
T ss_pred ccc----ccccccccccccccccc--cceeeeeecccccccccccccce------ecccccCCceEEEEEcCCCCEEEE-
Confidence 643 34456799999999886 57999999999999999976432 123344444433 333445554
Q ss_pred eCCCcEEEeeCCCCceeeee-EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 293 SADKTIRIWRGIDRNYTCLA-VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 293 s~D~~i~~W~~~~~~~~~~~-~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+.|++|++||... ++++. .+.+|.+.|++++|+|+ .+|+++|.||+++||.+++
T Consensus 300 g~d~~i~vwd~~t--g~~~~~~~~~~~~~V~~v~~~~~----------~~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 300 GSENQFNIYNLRS--GKLVHANILKDADQIWSVNFKGK----------TLVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp EETTEEEEEETTT--CCBCCSCTTTTCSEEEEEEEETT----------EEEEEEESSSCEEEEEEEC
T ss_pred EeCCEEEEEECCC--CCEEEEEecCCCCCEEEEEEcCC----------eEEEEEECCCcEEEEEEeC
Confidence 5689999999643 44554 57899999999999753 4688999999988776654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.5e-36 Score=257.82 Aligned_cols=269 Identities=19% Similarity=0.238 Sum_probs=205.2
Q ss_pred cceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecC
Q 044557 9 HHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQD 87 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~d 87 (362)
.+++++|+||.++|++|+|+. |+|||.||+|++||+.+.. ..|...|.++.+.++ .+++++.|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~--------------~~h~~~V~~~~~~~~~~~~s~s~D 66 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMH--------------QDHSNLIVSLDNSKAQEYSSISWD 66 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEEE--------------CCCCSCEEEEECCSTTCCEEEETT
T ss_pred cceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCCC--------------CCCCCCEEEEEecCCCeEEEEeec
Confidence 478999999999999999976 9999999999999975421 124556777776644 58999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
+++++|++... .....+.++++++++..++++ .++.+.
T Consensus 67 ~~v~~w~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 104 (287)
T d1pgua2 67 DTLKVNGITKH-----------------------------------------EFGSQPKVASANNDGFTAVLT-NDDDLL 104 (287)
T ss_dssp TEEEETTEEEE-----------------------------------------ECSSCEEEEEECSSSEEEEEE-TTSEEE
T ss_pred ccccccccccc-----------------------------------------ccccceeeeeeccCCceEEEe-ecccce
Confidence 99999986421 112345677788887766654 567888
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
+|+..+++.+..+. +...+. ++++++. +++++.| +.|++|++..... .......|..++++++|+|++.+|
T Consensus 105 ~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l 177 (287)
T d1pgua2 105 ILQSFTGDIIKSVR--LNSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEV---SFDLKTPLRAKPSYISISPSETYI 177 (287)
T ss_dssp EEETTTCCEEEEEE--CSSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEE---EEECSSCCSSCEEEEEECTTSSEE
T ss_pred eeeccceeeeeecc--ccceee--eeeccCcceeeeccccceeeeeeccccce---eeeeeeccCCceeEEEeccCcccc
Confidence 99999888877664 233343 4555554 6666655 5799999865432 122233477889999999999999
Q ss_pred EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC------------CeEEEeeCCCcEEEeeCCCCceeeeeE
Q 044557 246 YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS------------DLVCSGSADKTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~------------~~~~s~s~D~~i~~W~~~~~~~~~~~~ 313 (362)
++|+.||.|++||..+.. .....+.+|...|.+++|++ .+++|||.|++|++|+... ...++..
T Consensus 178 ~~g~~dg~i~i~d~~~~~---~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~-~~~~~~~ 253 (287)
T d1pgua2 178 AAGDVMGKILLYDLQSRE---VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR-PMKIIKA 253 (287)
T ss_dssp EEEETTSCEEEEETTTTE---EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC-TTCCEEE
T ss_pred ccccccccccceeecccc---cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC-CCeEEEE
Confidence 999999999999987532 23345678999999998853 3799999999999999643 3456778
Q ss_pred ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 314 LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 314 l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+.+|.+.|++++|+|++ .|+|+|.|++||+|++
T Consensus 254 ~~~h~~~V~~v~~~~~~----------~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 254 LNAHKDGVNNLLWETPS----------TLVSSGADACIKRWNV 286 (287)
T ss_dssp TTSSTTCEEEEEEEETT----------EEEEEETTSCEEEEEE
T ss_pred eCCCCCCeEEEEECCCC----------EEEEEECCCeEEEEEE
Confidence 89999999999998753 3789999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-34 Score=252.65 Aligned_cols=250 Identities=18% Similarity=0.243 Sum_probs=197.3
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
+....+.|.+|.+.|++++|+ |++||||+.||+|++||+......... .+..+.+.+.++.+.++ .+++
T Consensus 47 ~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~d~~~l~~ 119 (311)
T d1nr0a1 47 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-------TIPVFSGPVKDISWDSESKRIAA 119 (311)
T ss_dssp CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-------EEECSSSCEEEEEECTTSCEEEE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccc-------ccccccCcccccccccccccccc
Confidence 445667789999999999994 789999999999999998764432211 12345678889988765 4777
Q ss_pred Eec--CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCE-EEEE
Q 044557 84 AHQ--DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL-LYSV 160 (362)
Q Consensus 84 ~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~ 160 (362)
++. +..+++|+++..... ..+.+|.+.|.+++|+|++++ |++|
T Consensus 120 ~~~~~~~~~~v~~~~~~~~~----------------------------------~~l~~h~~~v~~v~~~~~~~~~l~sg 165 (311)
T d1nr0a1 120 VGEGRERFGHVFLFDTGTSN----------------------------------GNLTGQARAMNSVDFKPSRPFRIISG 165 (311)
T ss_dssp EECCSSCSEEEEETTTCCBC----------------------------------BCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred cccccccccccccccccccc----------------------------------ccccccccccccccccccceeeeccc
Confidence 765 456999998754321 012357889999999999884 8899
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee---hhhhccccceeEE
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV---DVLERHNSGINAL 236 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i 236 (362)
+.|+.|++||+++++....+. .|..+|.+++++|++. +++++.||.|++||..++.....+. ....+|..+|+++
T Consensus 166 s~d~~i~i~d~~~~~~~~~~~-~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~ 244 (311)
T d1nr0a1 166 SDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 244 (311)
T ss_dssp ETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred ccccccccccccccccccccc-cccccccccccCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999998877664 7899999999999987 7889999999999998765433221 1234688999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc---ceeEEEEEeCCeEEEeeCCCcEEEeeC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT---KSILCMAVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~s~s~D~~i~~W~~ 303 (362)
+|+|++++|++|+.||.|++||+++.+ .+..+..|. ..+.++.+.++.+++++.||.|++||.
T Consensus 245 ~~s~~~~~l~tgs~Dg~v~iwd~~t~~----~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 245 TWSPDGTKIASASADKTIKIWNVATLK----VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310 (311)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTE----EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred ccCCCCCEEEEEeCCCeEEEEECCCCc----EEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence 999999999999999999999987643 334444443 456778888899999999999999984
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-33 Score=241.61 Aligned_cols=280 Identities=26% Similarity=0.435 Sum_probs=212.9
Q ss_pred cceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCC
Q 044557 9 HHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDH 88 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg 88 (362)
.+.++.+.+|...|+|+++++++||||+.||+|||||+++... . ..+..|.+.|.++.+.++.|++++.|+
T Consensus 5 ~~~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~--~-------~~l~~H~~~V~~v~~~~~~l~s~s~D~ 75 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC--K-------RILTGHTGSVLCLQYDERVIITGSSDS 75 (293)
T ss_dssp CCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE--E-------EEECCCSSCEEEEECCSSEEEEEETTS
T ss_pred EEEEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcE--E-------EEEecCCCCEeeeecccceeecccccc
Confidence 3566778899999999999999999999999999999876431 1 122346778899998888999999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
.|++|++..+..... ..........+.+....++++..++.+++
T Consensus 76 ~i~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (293)
T d1p22a2 76 TVRVWDVNTGEMLNT------------------------------------LIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119 (293)
T ss_dssp CEEEEESSSCCEEEE------------------------------------ECCCCSCEEEEECCTTEEEEEETTSCEEE
T ss_pred ccccccccccccccc------------------------------------ccccccccccccccccceeecccccceeE
Confidence 999999875432100 00011122334556678899999999999
Q ss_pred EECCCceE--EEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEE
Q 044557 169 WRTSDFKC--LESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY 246 (362)
Q Consensus 169 wd~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 246 (362)
|+...... .......|...+..+.+.+. .+++++.|+.|++||..+++. ...+..+...|..+.+ ++.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~ 192 (293)
T d1p22a2 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWNTSTCEF----VRTLNGHKRGIACLQY--RDRLVV 192 (293)
T ss_dssp EECSSSSCCEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEE--ETTEEE
T ss_pred eeccccccccccccccccccccccceeccc-ccccccCCCceeeecCCCCcE----EEEEcccccccccccC--CCCeEE
Confidence 99876542 22233467888887777653 477889999999999987653 3334567777776665 467999
Q ss_pred EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCC-------CCceeeeeEecCCCC
Q 044557 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGI-------DRNYTCLAVLEGHRG 319 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~-------~~~~~~~~~l~~h~~ 319 (362)
+++.|+.|++||+++.. .+....+|...+.++...+.++++++.||.|++|+.. .....+++.+.+|.+
T Consensus 193 ~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~ 268 (293)
T d1p22a2 193 SGSSDNTIRLWDIECGA----CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 268 (293)
T ss_dssp EEETTSCEEEEETTTCC----EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS
T ss_pred EecCCCEEEEEecccce----eeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC
Confidence 99999999999998643 3445678888888888888899999999999999842 122346788999999
Q ss_pred cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 320 PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
.|++++|.+ .+|+|||.||+|+|||
T Consensus 269 ~V~~v~~d~-----------~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 269 RVFRLQFDE-----------FQIVSSSHDDTILIWD 293 (293)
T ss_dssp CCCCEEECS-----------SCEEECCSSSEEEEEC
T ss_pred CEEEEEEcC-----------CEEEEEecCCEEEEeC
Confidence 999998842 2589999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.1e-32 Score=237.66 Aligned_cols=287 Identities=15% Similarity=0.189 Sum_probs=204.8
Q ss_pred ceeeeEec--CcEEEEecCCC-eEEEeecCCCCcccceeeeccceeEEee-cceeEEEEEcC----ceeEEEecCCcEEE
Q 044557 21 YVSSLALA--GKFLYTGSSDN-EVRSWDCNTFSSELDQEFLSNNNIVAVG-KGAVKSLVVLA----DKLFSAHQDHKIRV 92 (362)
Q Consensus 21 ~V~~l~~~--~~~l~t~s~Dg-~i~vWd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~----~~l~s~~~dg~i~~ 92 (362)
.+++++|+ ++.|+.++.+. .|+.|+...........+ ..| ...+.++.+.+ ..|++++.||+|++
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~-------~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~i 91 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF-------TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 91 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE-------CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE-------eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEE
Confidence 34677774 67887776554 478887543322111111 112 34688888864 35889999999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC--CCcEEEEE
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW--DRTIKIWR 170 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--d~~i~iwd 170 (362)
||+........ ........+..|.++|.+++|+++++++++++. ++.+++|+
T Consensus 92 Wd~~~~~~~~~--------------------------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~ 145 (325)
T d1pgua1 92 WGWTFDKESNS--------------------------VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 145 (325)
T ss_dssp EEEEEEGGGTE--------------------------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred eeecCCcceee--------------------------eecccccccccccCcEEEEEECCCCCccceeeccccceEEEEe
Confidence 99854321100 000111223457889999999999999888764 67899999
Q ss_pred CCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-CCEEEE
Q 044557 171 TSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD-GSVLYS 247 (362)
Q Consensus 171 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s 247 (362)
.++++++..+. +|...|.+++|+|++. +++++.|+.|++|+..+.+... .......|...|.+++|+|+ +.+|++
T Consensus 146 ~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~~~v~~v~~~pd~~~~l~s 223 (325)
T d1pgua1 146 WDSGNSLGEVS-GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA-SDRTHHKQGSFVRDVEFSPDSGEFVIT 223 (325)
T ss_dssp TTTCCEEEECC-SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE-EECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred ecccccceeee-ecccccccccccccccceEEEeecccccccccccccccce-ecccccCCCCccEEeeeccccceeccc
Confidence 99998888775 7999999999999875 6789999999999987654322 23345567889999999997 688999
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeecCccceeE----EEEEe-CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCC--c
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALRGHTKSIL----CMAVV-SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG--P 320 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~----~~~~~-~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~--~ 320 (362)
++.|+.|++||.++.+ .+..+.+|...+. ++.+. +.+|++++.|+.|+|||... .++++.+..|.. .
T Consensus 224 ~~~d~~i~iwd~~~~~----~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~--~~~~~~~~~~~~~~~ 297 (325)
T d1pgua1 224 VGSDRKISCFDGKSGE----FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT--SKCVQKWTLDKQQLG 297 (325)
T ss_dssp EETTCCEEEEETTTCC----EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT--TEEEEEEECCTTCGG
T ss_pred cccccceeeeeecccc----ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC--CCEEEEEEecCCccc
Confidence 9999999999987643 3456777877664 34443 35899999999999999654 456776665554 3
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+..+++.+.++ .+|+|||.||+|++||+
T Consensus 298 ~~~~~~~~~~~--------~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 298 NQQVGVVATGN--------GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp GCEEEEEEEET--------TEEEEEETTSCEEEEET
T ss_pred CeEEEEEECCC--------CEEEEEECCCEEEEEEC
Confidence 44555554321 25889999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.8e-32 Score=246.36 Aligned_cols=246 Identities=13% Similarity=0.142 Sum_probs=195.7
Q ss_pred cceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
..+|.+++++++ .|++++.|+.|++|++..++. .....+.+|.+.|
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~--------------------------------~~~~~l~gH~~~V 54 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW--------------------------------VQVHELKEHNGQV 54 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE--------------------------------EEEEEEECCSSCE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE--------------------------------EEEEEecCCCCCE
Confidence 467889998765 588999999999999864321 0112335799999
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCceEEEee-eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI-TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
.+++|+|++++|++|+.|++|+|||+.+......+ ...|...|.+++|+|+++ +++++.|++|++|+++.........
T Consensus 55 ~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~ 134 (371)
T d1k8kc_ 55 TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 134 (371)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred EEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc
Confidence 99999999999999999999999999876644332 246888999999999997 8899999999999988766544444
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC--------------cEEEEEeecCccceeEEEEEeCC--
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG--------------NILVVGALRGHTKSILCMAVVSD-- 287 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~--------------~~~~~~~~~~h~~~v~~~~~~~~-- 287 (362)
.....|...|.+++|+|++++|++|+.|++|++|+...... ....+....+|...|.+++|+++
T Consensus 135 ~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 214 (371)
T d1k8kc_ 135 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 214 (371)
T ss_dssp EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred ccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc
Confidence 55667889999999999999999999999999999753211 01234456788999999999764
Q ss_pred eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 288 LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++++++.|+.|++|+.. ...++..+.+|..+|.+++|+|++ .+|++|+ |+.+++|...
T Consensus 215 ~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~s~~fs~d~---------~~la~g~-d~~~~~~~~~ 272 (371)
T d1k8kc_ 215 RVAWVSHDSTVCLADAD--KKMAVATLASETLPLLAVTFITES---------SLVAAGH-DCFPVLFTYD 272 (371)
T ss_dssp EEEEEETTTEEEEEEGG--GTTEEEEEECSSCCEEEEEEEETT---------EEEEEET-TSSCEEEEEE
T ss_pred cccccccCCcceEEeee--cccceeeeecccccceeeeecCCC---------CEEEEEc-CCceEEEEee
Confidence 89999999999999964 345688899999999999998764 4676665 7887777653
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-31 Score=236.90 Aligned_cols=237 Identities=21% Similarity=0.354 Sum_probs=190.4
Q ss_pred ecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCc
Q 044557 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHK 89 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~ 89 (362)
...+|.+.|.+++|+ +++|++|+.||+|++||+.......... +..+...+..+.+.++ .+++++.|+.
T Consensus 92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 164 (337)
T d1gxra_ 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE-------LTSSAPACYALAISPDSKVCFSCCSDGN 164 (337)
T ss_dssp ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE-------EECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccc-------cccccccccccccccccccccccccccc
Confidence 456899999999994 7899999999999999986543222111 2234456667777654 5889999999
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIW 169 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iw 169 (362)
|++|++..... ......|...+.+++|++++..+++++.|+.|++|
T Consensus 165 i~~~~~~~~~~----------------------------------~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~ 210 (337)
T d1gxra_ 165 IAVWDLHNQTL----------------------------------VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEETTTTEE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccccccccccc----------------------------------ccccccccccccccccccccccccccccccccccc
Confidence 99999865321 01123577889999999999999999999999999
Q ss_pred ECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE
Q 044557 170 RTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 170 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
|+++++.+..+ .|...|.+++|+|++. +++++.||.|++||+...... ....|..+|++++|+|++++|+++
T Consensus 211 d~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~i~~v~~s~~g~~l~s~ 283 (337)
T d1gxra_ 211 DLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-----QLHLHESCVLSLKFAYCGKWFVST 283 (337)
T ss_dssp ETTTTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-----EECCCSSCEEEEEECTTSSEEEEE
T ss_pred ccccceeeccc--ccccceEEEEEcccccccceeccccccccccccccccc-----cccccccccceEEECCCCCEEEEE
Confidence 99999988766 4788999999999987 788999999999999876422 234688999999999999999999
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
+.||.|++||..+.+. +.. .+|...|.+++|+++ +|++|+.|++|++||+
T Consensus 284 s~Dg~i~iwd~~~~~~----~~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 284 GKDNLLNAWRTPYGAS----IFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ETTSEEEEEETTTCCE----EEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred eCCCeEEEEECCCCCE----EEE-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 9999999999986442 222 347889999999864 8999999999999984
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=2e-29 Score=218.83 Aligned_cols=242 Identities=26% Similarity=0.483 Sum_probs=201.6
Q ss_pred eEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 63 IVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 63 ~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
.+..|.+.|.++.+.++ .|++++.||+|++||+++++.. .++..
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~----------------------------------~~~~~ 57 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE----------------------------------RTLKG 57 (317)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC----------------------------------EEECC
T ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE----------------------------------EEEeC
Confidence 45668889999998754 5999999999999998764321 12335
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
|.+.|.+++++|++.++++++.++.+.+|+....+....+ ..|...+.++.++|++. +++++.|+.+++||+.++..
T Consensus 58 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~- 135 (317)
T d1vyhc1 58 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC- 135 (317)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-
T ss_pred CCCcEEEEeeeccccccccccccccccccccccccccccc-ccccccceeeeccCCCceEEeeccCcceeEeeccccee-
Confidence 8889999999999999999999999999999887766655 47888999999999887 88999999999999987653
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-------------
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS------------- 286 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~------------- 286 (362)
...+..|...+.+++|+|++.+|++++.|+.|++|+..... ....+.+|...+.++.+.+
T Consensus 136 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 208 (317)
T d1vyhc1 136 ---VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGS 208 (317)
T ss_dssp ---EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred ---eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce----eeEEEecCCCCceEEEEeeccccceeeccccc
Confidence 33456788999999999999999999999999999997644 2345667888787777643
Q ss_pred ---------CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 287 ---------DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 287 ---------~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.++++++.|+.|++|+.. ...++.++.+|...|.+++++|++ .+|++|+.||.|++||+.
T Consensus 209 ~~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~s~~~dg~i~iwd~~ 277 (317)
T d1vyhc1 209 ETKKSGKPGPFLLSGSRDKTIKMWDVS--TGMCLMTLVGHDNWVRGVLFHSGG---------KFILSCADDKTLRVWDYK 277 (317)
T ss_dssp C-------CCEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEECSSS---------SCEEEEETTTEEEEECCT
T ss_pred eeeeeccCCceeEeccCCCEEEEEECC--CCcEEEEEeCCCCCEEEEEECCCC---------CEEEEEECCCeEEEEECC
Confidence 258899999999999964 456788999999999999998764 468999999999999985
Q ss_pred c
Q 044557 358 F 358 (362)
Q Consensus 358 ~ 358 (362)
.
T Consensus 278 ~ 278 (317)
T d1vyhc1 278 N 278 (317)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.3e-29 Score=226.28 Aligned_cols=290 Identities=20% Similarity=0.323 Sum_probs=201.6
Q ss_pred EEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeee
Q 044557 32 LYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLA 109 (362)
Q Consensus 32 l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~ 109 (362)
.+.+..++...+|+..... .....+ .....|.+.|.++.++++ .|++|+ |++|++|++..+....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~-~~~~~l----~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~------- 97 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPR-EIDVEL----HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA------- 97 (388)
T ss_dssp TSEEECSSCEEEECTTSCC-CEEEEE----EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE-------
T ss_pred ccccCCCCcEEEeCCCCCc-ceeeee----EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEe-------
Confidence 4567788999999854321 111111 111246789999999875 466664 9999999997654211
Q ss_pred eccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEE
Q 044557 110 TLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN 189 (362)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~ 189 (362)
.+...... ..............|...|.+++|+|++++|++|+.|+.|++||...++.+.... +|...|.
T Consensus 98 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~-~h~~~v~ 167 (388)
T d1erja_ 98 RLSDDSAA---------NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIY 167 (388)
T ss_dssp EECC--------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEE
T ss_pred eecccccc---------cccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccc-ccccccc
Confidence 11000000 0000001111223577889999999999999999999999999999998887664 7999999
Q ss_pred EEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe-cCCCEEEEEcCCCcEEEEeccCCCCcEE
Q 044557 190 AVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS-CDGSVLYSGACDRSIIVWEKEEDDGNIL 267 (362)
Q Consensus 190 ~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s-~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 267 (362)
++++++++. +++++.++.|++||..+.... .... +.....++.+. +++.+|++|+.|+.|++|+..+......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 242 (388)
T d1erja_ 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS----LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242 (388)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEE----EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ccccccccccccccccceeeeeeeccccccc----cccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCcccee
Confidence 999999886 789999999999998765322 1222 33344455554 5889999999999999999876442211
Q ss_pred E---EEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCC----------ceeeeeEecCCCCcEEEEEeeecCCc
Q 044557 268 V---VGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDR----------NYTCLAVLEGHRGPVKCLAAAIDNDR 332 (362)
Q Consensus 268 ~---~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~----------~~~~~~~l~~h~~~v~~~~~~~~~~~ 332 (362)
. .....+|...|.+++++++ ++++++.|+.|++|+.... ...+......|...|.+++|+|++
T Consensus 243 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-- 320 (388)
T d1erja_ 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-- 320 (388)
T ss_dssp EC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG--
T ss_pred eccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC--
Confidence 1 1123578899999999864 8999999999999986321 123445677899999999998764
Q ss_pred cCCCCCceEEEecCCCCcEEEEeccc
Q 044557 333 CDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 333 ~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+|++|+.||+|++||+..
T Consensus 321 -------~~l~sg~~dg~i~vwd~~~ 339 (388)
T d1erja_ 321 -------EYILSGSKDRGVLFWDKKS 339 (388)
T ss_dssp -------CEEEEEETTSEEEEEETTT
T ss_pred -------CEEEEEeCCCEEEEEECCC
Confidence 4799999999999999853
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.2e-29 Score=221.99 Aligned_cols=253 Identities=16% Similarity=0.220 Sum_probs=182.0
Q ss_pred ccceeeecccCc-cceeeeEec----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--e
Q 044557 8 DHHCLTTLKGHN-SYVSSLALA----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--K 80 (362)
Q Consensus 8 ~~~~~~tl~gH~-~~V~~l~~~----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~ 80 (362)
....+.++.||. ..|++++|+ +.+|+||+.||+||+||+........... ........+.+++.++.+.++ .
T Consensus 51 ~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~ 129 (325)
T d1pgua1 51 KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV-NVKSEFQVLAGPISDISWDFEGRR 129 (325)
T ss_dssp SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE-EEEEEEECCSSCEEEEEECTTSSE
T ss_pred CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeec-ccccccccccCcEEEEEECCCCCc
Confidence 334566778884 689999994 56999999999999999865332211111 111223445678888888765 4
Q ss_pred eEEEe--cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCE-E
Q 044557 81 LFSAH--QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL-L 157 (362)
Q Consensus 81 l~s~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l 157 (362)
+++++ .++.+++|+.+.+.. ...+.+|...|.+++|+|++++ +
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~~~~ 175 (325)
T d1pgua1 130 LCVVGEGRDNFGVFISWDSGNS----------------------------------LGEVSGHSQRINACHLKQSRPMRS 175 (325)
T ss_dssp EEEEECCSSCSEEEEETTTCCE----------------------------------EEECCSCSSCEEEEEECSSSSCEE
T ss_pred cceeeccccceEEEEeeccccc----------------------------------ceeeeecccccccccccccccceE
Confidence 55554 467899998765321 1112358889999999999875 7
Q ss_pred EEEECCCcEEEEECCCceEEEeee--ccCcccEEEEEEcCCC-c-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccce
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESIT--NAHDDAINAVALSDDG-D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~--~~h~~~v~~v~~~~~~-~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
++++.|+.|++||....+...... ..|...|.+++|+|++ . +++++.||.|++||+.++.. ...+..|..++
T Consensus 176 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~----~~~l~~~~~~v 251 (325)
T d1pgua1 176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF----LKYIEDDQEPV 251 (325)
T ss_dssp EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE----EEECCBTTBCC
T ss_pred EEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccc----ccccccccccc
Confidence 789999999999998887655543 3577789999999974 4 78899999999999987653 34456677777
Q ss_pred eEEEEe---cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC--cccee--EEEEEeC-CeEEEeeCCCcEEEeeC
Q 044557 234 NALALS---CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG--HTKSI--LCMAVVS-DLVCSGSADKTIRIWRG 303 (362)
Q Consensus 234 ~~i~~s---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--h~~~v--~~~~~~~-~~~~s~s~D~~i~~W~~ 303 (362)
..+.|+ |+|++|++++.|+.|++||+++++ .+..+.. |...+ .++.+.+ .+++++|.|++|++||+
T Consensus 252 ~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 252 QGGIFALSWLDSQKFATVGADATIRVWDVTTSK----CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp CSCEEEEEESSSSEEEEEETTSEEEEEETTTTE----EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ccceeeeeccCCCEEEEEeCCCeEEEEECCCCC----EEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 666665 689999999999999999998643 2233333 33333 3444444 48999999999999983
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=7.2e-30 Score=221.71 Aligned_cols=212 Identities=20% Similarity=0.261 Sum_probs=169.2
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCC
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~ 216 (362)
...+|.+.|++++|+|++++|++|+.|++|++||+++++++..+...|...|.+++|+|++.+++++.|+.+++|+....
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~ 86 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGS 86 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSS
T ss_pred EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCc
Confidence 45689999999999999999999999999999999999988887778999999999999999999999999999986532
Q ss_pred CCcce--e----------e-----------------h-------hhhccccceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 217 NKKHS--L----------V-----------------D-------VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 217 ~~~~~--~----------~-----------------~-------~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
..... . . . ........+.+++|+|++++|++|+.|+.|++||++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~ 166 (299)
T d1nr0a2 87 GVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS 166 (299)
T ss_dssp SSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 21000 0 0 0 000123356788999999999999999999999987
Q ss_pred CCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCC-ceeeeeEecCCCCcEEEEEeeecCCccCCCC
Q 044557 261 EDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDR-NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSD 337 (362)
Q Consensus 261 ~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~-~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~ 337 (362)
+... .. .....|...|.+++++++ ++++++.|+.|++|+.... .......+.+|...|.+++|+|++
T Consensus 167 ~~~~--~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~------- 236 (299)
T d1nr0a2 167 GASV--SE-VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN------- 236 (299)
T ss_dssp TTEE--EE-EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS-------
T ss_pred cccc--cc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence 5431 11 123468889999999864 8999999999999996432 223345678999999999998654
Q ss_pred CceEEEecCCCCcEEEEecccCc
Q 044557 338 TSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 338 ~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
.+|++|+.||+|++||+..+.
T Consensus 237 --~~l~sgs~dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 237 --VRLATGSLDNSVIVWNMNKPS 257 (299)
T ss_dssp --SEEEEEETTSCEEEEETTCTT
T ss_pred --cceEEEcCCCEEEEEECCCCC
Confidence 479999999999999997653
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=2.1e-28 Score=215.15 Aligned_cols=249 Identities=24% Similarity=0.428 Sum_probs=191.0
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE-cCceeEEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV-LADKLFSA 84 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~l~s~ 84 (362)
+.+++.++.+|.+.|.+++|. ++++++|+.|+++++|+........... ..+..+......... ....+...
T Consensus 86 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 160 (340)
T d1tbga_ 86 TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS-----RELAGHTGYLSCCRFLDDNQIVTS 160 (340)
T ss_dssp TTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEE-----EEECCCSSCEEEEEEEETTEEEEE
T ss_pred cceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccc-----eecccccccccccccccccccccc
Confidence 456788899999999999994 7899999999999999976533221111 011112222222222 23456677
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
..|.....+....... ......+...+....+.+...++++|+.|+
T Consensus 161 ~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 206 (340)
T d1tbga_ 161 SGDTTCALWDIETGQQ----------------------------------TTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206 (340)
T ss_dssp ETTTEEEEEETTTTEE----------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred cccccccccccccccc----------------------------------cccccccceeEeeeccccccceeEEeecCc
Confidence 7788887776543210 011123456678888999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
.|++||+++++++..+. +|...|.+++|+|++. +++++.||.|++|++......... ....+..+|.+++|+|++.
T Consensus 207 ~v~i~d~~~~~~~~~~~-~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~ 283 (340)
T d1tbga_ 207 SAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY--SHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp EEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCTTCCSCEEEEEECSSSC
T ss_pred eEEEEECCCCcEEEEEe-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc--ccccccCceEEEEECCCCC
Confidence 99999999999988875 7999999999999987 889999999999999765432222 2345677899999999999
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
+|++|+.||.|++||+.+.+ .+..+.+|...|.+++|+++ +|+|||.||+|++||
T Consensus 284 ~l~~g~~dg~i~iwd~~~~~----~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 284 LLLAGYDDFNCNVWDALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEECCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999999999987643 45678899999999999865 899999999999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.3e-28 Score=215.61 Aligned_cols=242 Identities=19% Similarity=0.295 Sum_probs=179.2
Q ss_pred EEeecce-eEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec
Q 044557 64 VAVGKGA-VKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV 142 (362)
Q Consensus 64 ~~~~~~~-v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 142 (362)
+..|... +.++.+.++.|++|+.||+|++||+.+++. ..++.+|.
T Consensus 8 L~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~----------------------------------~~~l~~H~ 53 (355)
T d1nexb2 8 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKF----------------------------------LLQLSGHD 53 (355)
T ss_dssp EECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEE----------------------------------EEEEECCS
T ss_pred ECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcE----------------------------------EEEEECCC
Confidence 3446554 567888888999999999999999865321 12345799
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc-CcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA-HDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
+.|.+++|+|+ .+|++|+.|+.|++|+....++....... +........+.+++. +++++.|+.|++|++.......
T Consensus 54 ~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~ 132 (355)
T d1nexb2 54 GGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 132 (355)
T ss_dssp SCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----
T ss_pred CCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceec
Confidence 99999999985 58999999999999999988776554322 223344555677775 7788999999999876532100
Q ss_pred -----------------------------------------------------------eeehhhhccccceeEEEEecC
Q 044557 221 -----------------------------------------------------------SLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 221 -----------------------------------------------------------~~~~~~~~h~~~v~~i~~s~~ 241 (362)
........+...+.++.++|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (355)
T d1nexb2 133 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 212 (355)
T ss_dssp ------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred cccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccccccccccc
Confidence 000112235566778899999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcE
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPV 321 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v 321 (362)
+.++++++.|+.|++||.++.. .+..+.+|...|.+++++++++++++.||.|++||.... ...+.+|...+
T Consensus 213 ~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~ 284 (355)
T d1nexb2 213 RKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY----SRKFSYHHTNL 284 (355)
T ss_dssp TTEEEEEETTSCEEEEETTTCC----EEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTC----CEEEEEECTTC
T ss_pred ceeeecccccceEEeeeccccc----cccccccccccccccccccceeeeeeccccccccccccc----ceecccccCCc
Confidence 9999999999999999998643 345678999999999999999999999999999996432 23456677777
Q ss_pred EEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 322 KCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..+++.+.. +.+|++| .|++|+|||+.
T Consensus 285 ~~~~~~~~~--------~~~l~~g-~d~~i~vwd~~ 311 (355)
T d1nexb2 285 SAITTFYVS--------DNILVSG-SENQFNIYNLR 311 (355)
T ss_dssp CCCCEEEEC--------SSEEEEE-ETTEEEEEETT
T ss_pred eEEEEEcCC--------CCEEEEE-eCCEEEEEECC
Confidence 776554332 2456665 58999999985
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8.1e-29 Score=217.05 Aligned_cols=296 Identities=9% Similarity=0.131 Sum_probs=197.3
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc---eeEEE
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD---KLFSA 84 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~l~s~ 84 (362)
|+++.+++|.+.|++|+|+ +++|||||.||+|||||+....... .+ .....|.+.|.++.+.++ .+++|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~--~~----~~~~~h~~~V~~v~f~~~~~~~l~sg 75 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV--DL----LQSLRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE--EE----EEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce--EE----EEecCCCCCEEEEEEeCCCCCEEEEc
Confidence 5678899999999999994 7899999999999999986532111 11 111235678999988643 58899
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|++|++|++........ . ...+........+.++...+++++.|+
T Consensus 76 ~~d~~v~~w~~~~~~~~~~-------~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (342)
T d1yfqa_ 76 TVQGEILKVDLIGSPSFQA-------L--------------------------TNNEANLGICRICKYGDDKLIAASWDG 122 (342)
T ss_dssp ETTSCEEEECSSSSSSEEE-------C--------------------------BSCCCCSCEEEEEEETTTEEEEEETTS
T ss_pred ccccceeeeeccccccccc-------c--------------------------ccccccccccccccccccccccccccc
Confidence 9999999999865432100 0 001222334555677888999999999
Q ss_pred cEEEEECCCceE----EEeeec-cCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 165 TIKIWRTSDFKC----LESITN-AHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 165 ~i~iwd~~~~~~----~~~~~~-~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
.+++||++.... ...... ..........+.+.+. +++++.|+.|++|++........... ...+...+.+..+
T Consensus 123 ~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 201 (342)
T d1yfqa_ 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVAL 201 (342)
T ss_dssp EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEE
T ss_pred ccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeee-ecccccceeeeEe
Confidence 999999865332 111110 1122233445555554 88999999999999977654333222 1223344555554
Q ss_pred -ecCCCEEEEEcCCCcEEEEeccCCCCc-----EEEEE------eecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 239 -SCDGSVLYSGACDRSIIVWEKEEDDGN-----ILVVG------ALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 239 -s~~~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~------~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
.+++..+++++.||.+.+|+....... ..... ...+|...+.+++|+++ +|+||+.||.|++||..
T Consensus 202 ~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~ 281 (342)
T d1yfqa_ 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred ecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECC
Confidence 457789999999999999987532210 01111 12356677899999864 89999999999999965
Q ss_pred CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 305 DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 305 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
. .+++.++..+ ..+..++|+|++ .+|++|+.|+++++|...
T Consensus 282 ~--~~~l~~~~~~-~~~~~~~~s~~~---------~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 282 T--RKKIKNFAKF-NEDSVVKIACSD---------NILCLATSDDTFKTNAAI 322 (342)
T ss_dssp T--TEEEEECCCC-SSSEEEEEEECS---------SEEEEEEECTHHHHCSSS
T ss_pred C--CcEEEEecCC-CCCEEEEEEeCC---------CEEEEEEcCCcEEEeeee
Confidence 4 4556777533 234445666654 357788888888888764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.5e-27 Score=204.65 Aligned_cols=245 Identities=29% Similarity=0.429 Sum_probs=183.3
Q ss_pred ccceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecC
Q 044557 8 DHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQD 87 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~d 87 (362)
+.+++++|++|.++|++|++++++|+||+.|++|++|++........ .. .............+.++++..+
T Consensus 44 ~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~ 114 (293)
T d1p22a2 44 TLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNT--LI-------HHCEAVLHLRFNNGMMVTCSKD 114 (293)
T ss_dssp SCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEE--EC-------CCCSCEEEEECCTTEEEEEETT
T ss_pred CCcEEEEEecCCCCEeeeecccceeeccccccccccccccccccccc--cc-------ccccccccccccccceeecccc
Confidence 56789999999999999999999999999999999999875432111 00 0111222233345668999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
+.+++|+........ .......|...+.++.+. ...+++++.|+.|+
T Consensus 115 ~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~ 161 (293)
T d1p22a2 115 RSIAVWDMASPTDIT-------------------------------LRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 161 (293)
T ss_dssp SCEEEEECSSSSCCE-------------------------------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred cceeEeecccccccc-------------------------------ccccccccccccccceec--ccccccccCCCcee
Confidence 999999986543210 011123456667766665 45788999999999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 247 (362)
+||+++++.+..+. ++...+..+.+++ ..+++++.||+|++||+.+... ......|...+.. +++++.+|++
T Consensus 162 ~~d~~~~~~~~~~~-~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~--~~~~~~~l~s 233 (293)
T d1p22a2 162 VWNTSTCEFVRTLN-GHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGAC----LRVLEGHEELVRC--IRFDNKRIVS 233 (293)
T ss_dssp EEETTTCCEEEEEE-CCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEE--EECCSSEEEE
T ss_pred eecCCCCcEEEEEc-ccccccccccCCC-CeEEEecCCCEEEEEeccccee----eeeecccceeeee--ccccceEEEE
Confidence 99999999888775 6777888887764 3589999999999999987643 2334456666654 5678899999
Q ss_pred EcCCCcEEEEeccCCCC-----cEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEee
Q 044557 248 GACDRSIIVWEKEEDDG-----NILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWR 302 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~ 302 (362)
|+.||.|++||+..... ....+..+.+|.+.|.++++++.+|+|+|.|++|++||
T Consensus 234 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred EcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 99999999999753211 11245668899999999999999999999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.5e-28 Score=220.69 Aligned_cols=260 Identities=13% Similarity=0.181 Sum_probs=171.9
Q ss_pred EeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 65 AVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
..|.+.|.++.+.++++++++.|++|++|+....+...+........... . -.+|...
T Consensus 11 ~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~-------------~---------~~~~~~~ 68 (393)
T d1sq9a_ 11 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK-------------S---------GLHHVDV 68 (393)
T ss_dssp SCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT-------------T---------CEEEEEE
T ss_pred CcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeecc-------------C---------CceEeee
Confidence 45778899999989999999999999999976544321111000000000 0 0012222
Q ss_pred eeEEEEec-CCCEEEEEECCCcEEEEECCCceE---E--Eee----eccCcccEEEEEEcCCC------cEEEEeCCCeE
Q 044557 145 VSALALTK-DETLLYSVSWDRTIKIWRTSDFKC---L--ESI----TNAHDDAINAVALSDDG------DVYTGSADKKI 208 (362)
Q Consensus 145 v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~---~--~~~----~~~h~~~v~~v~~~~~~------~~~s~~~dg~i 208 (362)
...+..++ +..++++++.||.|++|++..... . ... ...+...+..+++.+++ .+++++.||+|
T Consensus 69 ~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i 148 (393)
T d1sq9a_ 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT 148 (393)
T ss_dssp EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE
T ss_pred EeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcE
Confidence 22222221 335788999999999998653221 1 111 11244567778877643 37889999999
Q ss_pred EEEeCCCCCCcc--------------eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEE--EEEee
Q 044557 209 KVWRRSPGNKKH--------------SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNIL--VVGAL 272 (362)
Q Consensus 209 ~iw~~~~~~~~~--------------~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~ 272 (362)
++|++....... ........+...+.+++|+|++ +|++|+.|++|++||+.+.+.... ....+
T Consensus 149 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l 227 (393)
T d1sq9a_ 149 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227 (393)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred EEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccccc
Confidence 999975332100 0111223345668899999997 899999999999999986432111 11245
Q ss_pred cCccceeEEEEEeCC--eEEEeeCCCc---EEEeeCCCCceeeeeE-------------ecCCCCcEEEEEeeecCCccC
Q 044557 273 RGHTKSILCMAVVSD--LVCSGSADKT---IRIWRGIDRNYTCLAV-------------LEGHRGPVKCLAAAIDNDRCD 334 (362)
Q Consensus 273 ~~h~~~v~~~~~~~~--~~~s~s~D~~---i~~W~~~~~~~~~~~~-------------l~~h~~~v~~~~~~~~~~~~~ 334 (362)
.+|...|.+++|+++ +|++||.|++ |++||... ..++.. +.||.+.|++++|+|++
T Consensus 228 ~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~--g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~---- 301 (393)
T d1sq9a_ 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF--GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG---- 301 (393)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT--CCEEEEECBC--------CCBSBSSCEEEEEECSSS----
T ss_pred ccccceEEEcccccccceeeeecCCCCcceeeeccccc--ceeeeeeccccccccceeeeecccCceeeeccCCCC----
Confidence 679999999999865 9999999975 89999643 223333 45999999999998764
Q ss_pred CCCCceEEEecCCCCcEEEEeccc
Q 044557 335 SSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 335 ~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+|+|||.|++|||||+..
T Consensus 302 -----~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 302 -----ETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp -----SEEEEEETTSEEEEEETTT
T ss_pred -----CeeEEECCCCEEEEEECCC
Confidence 4799999999999999864
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4e-26 Score=200.05 Aligned_cols=279 Identities=20% Similarity=0.312 Sum_probs=186.7
Q ss_pred eccceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEec
Q 044557 7 VDHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQ 86 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~ 86 (362)
.+.+++++|++|.+.|.++.+.+++|+||+.|+++++|+......... . ......+.........+..+..
T Consensus 45 ~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~ 115 (342)
T d2ovrb2 45 VTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHT--L-------YGHTSTVRCMHLHEKRVVSGSR 115 (342)
T ss_dssp TTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE--E-------CCCSSCEEEEEEETTEEEEEET
T ss_pred CCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccccceec--c-------cccceeEeeeeccccccccccc
Confidence 356789999999999999999999999999999999999765321110 0 0112233444445666788889
Q ss_pred CCcEEEEecCCCCCCcccce----eeeeccCCCchhhhhccccccceeeee----eeeEEeeecCceeEEEEecCCCEEE
Q 044557 87 DHKIRVWKINNQEPDHQKYT----RLATLPTLGDRAIKLLMPKNHVQIRRH----KTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
|+.+.+|+............ ...... ...........+.+.++.. ....+..|...+. .+++++.+|+
T Consensus 116 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ 191 (342)
T d2ovrb2 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHVV 191 (342)
T ss_dssp TSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE--EEEECSSEEE
T ss_pred ceeEEEeecccccceeeeecccccceeecc--ccceeeeecCCCeEEEeecccceeeEEEcCcccccc--cccCCCCEEE
Confidence 99999999876542111000 000000 0000000111111222211 1122334544444 4556788999
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
+|+.|+.|++||++.++++..+. .|...+.+++++++ .+++++.||.|++||........ .......|...+.++.+
T Consensus 192 s~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~ 268 (342)
T d2ovrb2 192 SGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQ-TLQGPNKHQSAVTCLQF 268 (342)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEE-EECSTTSCSSCEEEEEE
T ss_pred EEeCCCeEEEeecccceeeeEec-ccccceeEEecCCC-EEEEEcCCCEEEEEecccccccc-cccccceeeeceeeccc
Confidence 99999999999999998888765 78889998888753 68999999999999998765432 22333446666666655
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEE-EeecCccceeEEEEEeCC--eEEEeeCCCc----EEEeeC
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVV-GALRGHTKSILCMAVVSD--LVCSGSADKT----IRIWRG 303 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~--~~~s~s~D~~----i~~W~~ 303 (362)
++.++++|+.||+|++||+++++...... ....+|...|.+++++++ ++++|+.||+ |++||.
T Consensus 269 --~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 269 --NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp --CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred --CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence 56799999999999999998754211111 112468888999999876 7899999986 899985
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.5e-26 Score=197.95 Aligned_cols=230 Identities=14% Similarity=0.158 Sum_probs=171.9
Q ss_pred cccCccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC-ceeEEEecCCcEEE
Q 044557 15 LKGHNSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-DKLFSAHQDHKIRV 92 (362)
Q Consensus 15 l~gH~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~s~~~dg~i~~ 92 (362)
.++|...|.++.+. +..+++++.|++||+|++.... + ...+..+...+ ..++..+.++.+.+
T Consensus 42 ~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (287)
T d1pgua2 42 HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE------F----------GSQPKVASANNDGFTAVLTNDDDLLI 105 (287)
T ss_dssp ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE------C----------SSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred CCCCCCCEEEEEecCCCeEEEEeeccccccccccccc------c----------ccceeeeeeccCCceEEEeeccccee
Confidence 56899999999995 6789999999999999864321 0 11122333333 34555667778888
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC-cEEEEEC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR-TIKIWRT 171 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~-~i~iwd~ 171 (362)
|+....... .. ..+.. .+.+++++++.+++++.|+ .+++|++
T Consensus 106 ~~~~~~~~~-------~~----------------------------~~~~~--~~~~~~~~~~~~~v~~~~~~~v~~~~~ 148 (287)
T d1pgua2 106 LQSFTGDII-------KS----------------------------VRLNS--PGSAVSLSQNYVAVGLEEGNTIQVFKL 148 (287)
T ss_dssp EETTTCCEE-------EE----------------------------EECSS--CEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred eeccceeee-------ee----------------------------ccccc--eeeeeeccCcceeeeccccceeeeeec
Confidence 887543310 00 01112 2345677888888888775 7999999
Q ss_pred CCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC---------
Q 044557 172 SDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD--------- 241 (362)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--------- 241 (362)
...+....+...|...+.+++|+|++. +++++.||.|++||+.++.. .......|..+|.+++|+|+
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 225 (287)
T d1pgua2 149 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV---KTSRWAFRTSKINAISWKPAEKGANEEEI 225 (287)
T ss_dssp TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EECCSCCCSSCEEEEEECCCC------CC
T ss_pred cccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccc---ccccccccccccceeeecccccccccccC
Confidence 877766666667888999999999997 88999999999999976542 22345678999999999874
Q ss_pred -CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeC
Q 044557 242 -GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRG 303 (362)
Q Consensus 242 -~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~ 303 (362)
+.+|++|+.|++|++||++.+.. .+..+.+|...|.++.|+++ .++|++.|++||+|++
T Consensus 226 ~~~~l~sgs~D~~i~iw~~~~~~~---~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 226 EEDLVATGSLDTNIFIYSVKRPMK---IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp SCCEEEEEETTSCEEEEESSCTTC---CEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred CCCeeEeecCCCeEEEEECCCCCe---EEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 56899999999999999876432 34567899999999998755 8999999999999984
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.1e-25 Score=195.07 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=175.9
Q ss_pred eecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC
Q 044557 66 VGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD 143 (362)
Q Consensus 66 ~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 143 (362)
.|+..|.++.+.++ .|++++.||+|++||++...... ......+|..
T Consensus 9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~-------------------------------~~~~~~~h~~ 57 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-------------------------------DLLQSLRYKH 57 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-------------------------------EEEEEEECSS
T ss_pred CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce-------------------------------EEEEecCCCC
Confidence 45677999999754 69999999999999986543110 0112236889
Q ss_pred ceeEEEEecCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCCCCCcce
Q 044557 144 AVSALALTKDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 144 ~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
+|.+++|+|++ .+|++|+.|+.|++|+.............+........+.++. .+++++.|+.+++||+........
T Consensus 58 ~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~ 137 (342)
T d1yfqa_ 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred CEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeecccccccee
Confidence 99999999875 5899999999999999988776665544444444444444444 588999999999999865443333
Q ss_pred eehhhhcc--ccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCeEEEeeCCC
Q 044557 222 LVDVLERH--NSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDLVCSGSADK 296 (362)
Q Consensus 222 ~~~~~~~h--~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D~ 296 (362)
.......+ ......+.+.+++..+++++.|+.|++|++.......... ....+...+.+.... +..+++++.|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 216 (342)
T d1yfqa_ 138 AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp EEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred eecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceee-eecccccceeeeEeecCCCCEEEeecCCC
Confidence 32222222 2344567788899999999999999999987654332222 223344445555543 34899999999
Q ss_pred cEEEeeCCCCce-------e------eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 297 TIRIWRGIDRNY-------T------CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 297 ~i~~W~~~~~~~-------~------~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+.+|....... . ......+|...|++++|+|++ .+|+|||.||+|++||+..
T Consensus 217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~---------~~lasg~~Dg~v~vWD~~~ 282 (342)
T d1yfqa_ 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH---------KFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT---------CCEEEEETTSCEEEEETTT
T ss_pred eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc---------cEEEEECCCCEEEEEECCC
Confidence 999997532110 0 011235678889999998764 4699999999999999864
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=1e-24 Score=193.08 Aligned_cols=270 Identities=13% Similarity=0.050 Sum_probs=188.2
Q ss_pred eeeeEe-cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eEEEecC--CcEEEEecC
Q 044557 22 VSSLAL-AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LFSAHQD--HKIRVWKIN 96 (362)
Q Consensus 22 V~~l~~-~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~s~~~d--g~i~~w~~~ 96 (362)
...++. +|+++|+++ +|.|++||++.... . . ..|...+.++.+++|. |++++.+ ..|++|+.+
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~--~-~--------~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~ 74 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV--L-K--------VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR 74 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBE--E-E--------CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcE--E-E--------ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC
Confidence 356676 789999886 58999999865321 1 0 1245678889998764 6666544 379999987
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceE
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 176 (362)
.+.. ..+..|...+.+++|+|++++|++++.++.+++|++.+++.
T Consensus 75 ~~~~-----------------------------------~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 119 (360)
T d1k32a3 75 TGKA-----------------------------------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119 (360)
T ss_dssp TCCE-----------------------------------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCcE-----------------------------------EEeeCCCceEEeeeecccccccceeccccccccccccccce
Confidence 5431 01134778899999999999999999999999999999887
Q ss_pred EEeeeccCcccEEEEEEcCCCc-EEE----------EeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 177 LESITNAHDDAINAVALSDDGD-VYT----------GSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 177 ~~~~~~~h~~~v~~v~~~~~~~-~~s----------~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
...+. .|...+.+++|+|+|+ ++. +..++.+++|+..++... ....+...+..++|+|||++|
T Consensus 120 ~~~~~-~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-----~~~~~~~~~~~~~~spdg~~l 193 (360)
T d1k32a3 120 TVIER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-----AATTENSHDYAPAFDADSKNL 193 (360)
T ss_dssp EEEEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-----ECSCSSSBEEEEEECTTSCEE
T ss_pred eeeee-cccccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee-----eecccccccccccccCCCCEE
Confidence 76654 6778889999999998 442 234567999998765321 223466778889999999999
Q ss_pred EEEcCCCcEEEEeccCCC------CcEEEEE-------------------------------------------eecCcc
Q 044557 246 YSGACDRSIIVWEKEEDD------GNILVVG-------------------------------------------ALRGHT 276 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~------~~~~~~~-------------------------------------------~~~~h~ 276 (362)
++++.|+.+++|+..... .....+. .+..+.
T Consensus 194 ~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (360)
T d1k32a3 194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273 (360)
T ss_dssp EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS
T ss_pred EEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecC
Confidence 999999999999853211 0000000 000011
Q ss_pred ceeEEEEEeC---C--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcE
Q 044557 277 KSILCMAVVS---D--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351 (362)
Q Consensus 277 ~~v~~~~~~~---~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i 351 (362)
+.+..+.+.. . ++++++.|+.|++|+...++ +..|.+.|.+++|+||+ ++|++++.||+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------~~~~~~~v~~~~~SpDG---------~~l~~~~~Dg~i 338 (360)
T d1k32a3 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK------VTEVKNNLTDLRLSADR---------KTVMVRKDDGKI 338 (360)
T ss_dssp SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC------EEEEEEEEEEEEECTTS---------CEEEEEETTSCE
T ss_pred CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe------EEEecCCcCEEEECCCC---------CEEEEEECCCeE
Confidence 1111222211 1 45678889999999965432 22355669999998775 458999999999
Q ss_pred EEEecccC
Q 044557 352 KVWQISFP 359 (362)
Q Consensus 352 ~~W~~~~~ 359 (362)
++||+..+
T Consensus 339 ~v~d~~~~ 346 (360)
T d1k32a3 339 YTFPLEKP 346 (360)
T ss_dssp EEEESSCT
T ss_pred EEEECCCC
Confidence 99999765
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=7.7e-21 Score=173.20 Aligned_cols=299 Identities=14% Similarity=0.023 Sum_probs=183.5
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--ee-E
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KL-F 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l-~ 82 (362)
..+++++|..|. .+..++|+ |+++++++.|++|++||+.+.......+.... ..+.+.+.+..+++| .| +
T Consensus 51 t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~----~~~~~~~~s~~~SpDG~~l~v 125 (432)
T d1qksa2 51 TYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG----SEARSIETSKMEGWEDKYAIA 125 (432)
T ss_dssp TCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC----SEEEEEEECCSTTCTTTEEEE
T ss_pred CCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC----CCCCCeEEecccCCCCCEEEE
Confidence 456888898874 58999994 89999999999999999876543222111110 012233333344433 44 5
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE-EEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL-YSVS 161 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s 161 (362)
+++.+++|++||....+............. .....+......+.++|++..+ ++.+
T Consensus 126 s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~v~~s~dg~~~~vs~~ 182 (432)
T d1qksa2 126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYD-----------------------EQEYHPEPRVAAILASHYRPEFIVNVK 182 (432)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCEECTT-----------------------TCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred EcCCCCeEEEEeCccccceeeeccCCcccc-----------------------ceeccCCCceeEEEECCCCCEEEEEEc
Confidence 778899999999876653211000000000 0002344566788899999875 5566
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEE-eCCCeEEEEeCCCCCCcceeeh---------------
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTG-SADKKIKVWRRSPGNKKHSLVD--------------- 224 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~-~~dg~i~iw~~~~~~~~~~~~~--------------- 224 (362)
.++.|.+|+..+.+........+...+..++|+|+|+ ++++ ..++.+.++|..+.........
T Consensus 183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~ 262 (432)
T d1qksa2 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 262 (432)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceec
Confidence 7899999999887755444334566788999999997 4444 4566888888765432111100
Q ss_pred -------------------------hhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee
Q 044557 225 -------------------------VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI 279 (362)
Q Consensus 225 -------------------------~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v 279 (362)
....|...|....++|++..+++++.|++.++|+.... ..|....
T Consensus 263 ~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~----------~~~~~~~ 332 (432)
T d1qksa2 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL----------NPEAEIS 332 (432)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT----------CSSHHHH
T ss_pred CCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccC----------CCCCCee
Confidence 00112234445556666666666666666666654321 1222222
Q ss_pred EEEE-EeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEec----CCCCcEEEE
Q 044557 280 LCMA-VVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG----SLDCDIKVW 354 (362)
Q Consensus 280 ~~~~-~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~----s~D~~i~~W 354 (362)
.+++ +....+++++.|+++++|+... .+.+.+|...|..++|+|++++ +++|. ..||.|+||
T Consensus 333 ~sv~vpDg~~la~~s~d~~~k~w~~~~-----~~~l~~~~~~v~~~~fS~DG~~--------v~~S~~~~~~~~g~i~i~ 399 (432)
T d1qksa2 333 GSVAVFDIKAMTGDGSDPEFKTLPIAE-----WAGITEGQPRVVQGEFNKDGTE--------VWFSVWNGKDQESALVVV 399 (432)
T ss_dssp TCEEEEEGGGCCCSSSCCCEEEECHHH-----HHTCCSSCCEEEEEEECTTSSE--------EEEEEECCTTSCCEEEEE
T ss_pred eEEEEEechhhcccccCCceEeccccc-----ccccCCCCCcEEEeEECCCCCE--------EEEEEecCCCCCCcEEEE
Confidence 2222 4566899999999999998421 1234567788999999887653 33442 357889999
Q ss_pred ecc
Q 044557 355 QIS 357 (362)
Q Consensus 355 ~~~ 357 (362)
|..
T Consensus 400 D~~ 402 (432)
T d1qksa2 400 DDK 402 (432)
T ss_dssp ETT
T ss_pred ECC
Confidence 964
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.84 E-value=1.1e-19 Score=165.27 Aligned_cols=274 Identities=11% Similarity=0.069 Sum_probs=173.0
Q ss_pred EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceee
Q 044557 31 FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRL 108 (362)
Q Consensus 31 ~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~ 108 (362)
++++.+.||+|+|||+.+.+. ...+ ..+ ..+..+.+++| ++++++.|++|++||+.+.+... .
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~--~~~l-------~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~-----~ 98 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKI--VKVI-------DTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-----V 98 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSE--EEEE-------ECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-----E
T ss_pred EEEEEcCCCEEEEEECCCCcE--EEEE-------eCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE-----E
Confidence 578899999999999887542 1122 122 24667888765 58999999999999997654210 0
Q ss_pred eeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE-EECCCcEEEEECCCceEEEeeeccCcc-
Q 044557 109 ATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS-VSWDRTIKIWRTSDFKCLESITNAHDD- 186 (362)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~h~~- 186 (362)
..+ ....+|...+.+++|+|||++|++ +..++.+++||..+++++..+. .|..
T Consensus 99 ~~i------------------------~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~-~~~~~ 153 (426)
T d1hzua2 99 AEI------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMT 153 (426)
T ss_dssp EEE------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEEC
T ss_pred EEE------------------------eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee-ccCCC
Confidence 000 011245556677788999998654 5588999999999988766543 3332
Q ss_pred ----------cEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc-CCCc
Q 044557 187 ----------AINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRS 253 (362)
Q Consensus 187 ----------~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~ 253 (362)
....+.+++++. + .+....+.+.+++..+.... ......+...+..+.|+|++++++++. .+..
T Consensus 154 ~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~ 230 (426)
T d1hzua2 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL---TVTSIGAAPFLADGGWDSSHRYFMTAANNSNK 230 (426)
T ss_dssp SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSC---EEEEEECCSSEEEEEECTTSCEEEEEETTCSE
T ss_pred ccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccce---eeEEeccCCccEeeeECCCCcEEEeeeecccc
Confidence 334455555554 2 23334455555555443221 111224566788999999999888776 4556
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEE--eCC---eEEEeeCCCcEEEeeCCC-----CceeeeeEecCCCCcEEE
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSD---LVCSGSADKTIRIWRGID-----RNYTCLAVLEGHRGPVKC 323 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~---~~~s~s~D~~i~~W~~~~-----~~~~~~~~l~~h~~~v~~ 323 (362)
+.+++..+.. .........+........+ ... ..++.+.|+.+.+|+... ...+....+.+|...+..
T Consensus 231 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~ 308 (426)
T d1hzua2 231 VAVIDSKDRR--LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLF 308 (426)
T ss_dssp EEEEETTTTE--EEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCC
T ss_pred eeeeeccccc--EEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeE
Confidence 8888887532 2222222222222222222 222 344566788888886422 234567889999999999
Q ss_pred EEeeecCCccCCCCCceEEE-------ecCCCCcEEEEeccc
Q 044557 324 LAAAIDNDRCDSSDTSYLVC-------SGSLDCDIKVWQISF 358 (362)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~-------s~s~D~~i~~W~~~~ 358 (362)
++|+|++. +|+ +++.|++|+|||+..
T Consensus 309 v~~sPdg~---------~l~v~~~~~~s~~~~~tv~vwd~~t 341 (426)
T d1hzua2 309 IKTHPKSS---------HLYVDTTFNPDARISQSVAVFDLKN 341 (426)
T ss_dssp EECCTTCS---------EEEECCTTCSSHHHHTCEEEEETTC
T ss_pred EEcCCCCc---------eEEEeecCCCCcccCCEEEEEECCC
Confidence 99998764 355 677899999999853
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.84 E-value=1e-18 Score=158.73 Aligned_cols=310 Identities=11% Similarity=0.016 Sum_probs=189.5
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--ee-E
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KL-F 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l-~ 82 (362)
..+++++|.+|. .+.+++|+ |+++++++.|++|++||+.+.......+.... ..+.+.+.++.+++| ++ +
T Consensus 51 t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~----~~~~~~~~s~~~spDG~~l~v 125 (426)
T d1hzua2 51 SKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG----IEARSVESSKFKGYEDRYTIA 125 (426)
T ss_dssp TCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC----SEEEEEEECCSTTCTTTEEEE
T ss_pred CCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC----CCCcceEEeeeecCCCCEEEE
Confidence 467888999885 48999994 89999999999999999987543221111110 012233334444433 45 4
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
++..++++++||......... ....... . ......+......+.+++++..++....
T Consensus 126 ~~~~~~~v~i~d~~~~~~~~~-------~~~~~~~----------~------~~~~~~~~~~~~~i~~s~d~~~~~~~~~ 182 (426)
T d1hzua2 126 GAYWPPQFAIMDGETLEPKQI-------VSTRGMT----------V------DTQTYHPEPRVAAIIASHEHPEFIVNVK 182 (426)
T ss_dssp EEEESSEEEEEETTTCCEEEE-------EECCEEC----------S------SSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred eecCCCeEEEEcCCccceeEE-------eeccCCC----------c------cceeecCCCceeEEEECCCCCEEEEecC
Confidence 556899999999876542110 0000000 0 0000123345566778888887776554
Q ss_pred -CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 163 -DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 163 -d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
.+.+.+++......+......+...+..++|+|+++ ++ +...+..+.+++..++........ ..+..+.....+.
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 260 (426)
T d1hzua2 183 ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV--GKTPHPGRGANFV 260 (426)
T ss_dssp TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC--SSCCCCSCCEEEE
T ss_pred CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc--CCcccccceeeee
Confidence 456777776665433322235677889999999997 33 445677899999887653322211 1122223333443
Q ss_pred cCCC---EEEEEcCCCcEEEEeccCCCC---cEEEEEeecCccceeEEEEEeCC--eEE-------EeeCCCcEEEeeCC
Q 044557 240 CDGS---VLYSGACDRSIIVWEKEEDDG---NILVVGALRGHTKSILCMAVVSD--LVC-------SGSADKTIRIWRGI 304 (362)
Q Consensus 240 ~~~~---~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~--~~~-------s~s~D~~i~~W~~~ 304 (362)
.++. ..++.+.|+.+.+|+...... .......+++|...+..++++++ +++ +++.|++|++||..
T Consensus 261 ~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~ 340 (426)
T d1hzua2 261 HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK 340 (426)
T ss_dssp ETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETT
T ss_pred cCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECC
Confidence 3332 223445678888887653211 11245678899999999999876 666 46779999999964
Q ss_pred CCceeeeeE---------ecCCCCcEEEEEeeecCCccCCCCCceEEEe----cCCCCcEEEEecc
Q 044557 305 DRNYTCLAV---------LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCS----GSLDCDIKVWQIS 357 (362)
Q Consensus 305 ~~~~~~~~~---------l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s----~s~D~~i~~W~~~ 357 (362)
.. ....+ +..|...|..++|+|++++ +++| ++.|+.|+|||..
T Consensus 341 t~--~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~--------i~vs~~~~~~~~~~i~v~D~~ 396 (426)
T d1hzua2 341 NL--DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE--------VWFSVWNGKNDSSALVVVDDK 396 (426)
T ss_dssp CT--TSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE--------EEEEECCCTTSCCEEEEEETT
T ss_pred CC--CcCeEEeccchhcccCCCCccEEEEEECCCCCE--------EEEEEecCCCCCCeEEEEECC
Confidence 32 12222 3456778999999988653 4454 3678999999975
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.84 E-value=2.2e-17 Score=141.61 Aligned_cols=259 Identities=15% Similarity=0.175 Sum_probs=172.6
Q ss_pred EEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE-EEecCCcEEEEecCCCCCCcccceee
Q 044557 32 LYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF-SAHQDHKIRVWKINNQEPDHQKYTRL 108 (362)
Q Consensus 32 l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-s~~~dg~i~~w~~~~~~~~~~~~~~~ 108 (362)
.++++.|++|++||+++.+ ...... .+ .....+.++++ +|+ +++.+++|++||+.+.+. +
T Consensus 5 yV~~~~~~~v~v~D~~t~~--~~~~i~-------~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-------~ 67 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNK--VTATIP-------VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------I 67 (301)
T ss_dssp EEEETTTTEEEEEETTTTE--EEEEEE-------CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------E
T ss_pred EEEECCCCEEEEEECCCCe--EEEEEE-------CC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-------e
Confidence 4677899999999987643 222211 11 23456777765 464 566789999999875431 1
Q ss_pred eeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE-EECCCcEEEEECCCceEEEeeeccCccc
Q 044557 109 ATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS-VSWDRTIKIWRTSDFKCLESITNAHDDA 187 (362)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~h~~~ 187 (362)
..+ ..+ ..+..+++++++..+++ +..++.+.+|+..+++....+. +...
T Consensus 68 ~~~---------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 117 (301)
T d1l0qa2 68 ATV---------------------------PAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKS 117 (301)
T ss_dssp EEE---------------------------ECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSS
T ss_pred eee---------------------------ecc-ccccccccccccccccccccccceeeecccccceeeeecc--cccc
Confidence 111 111 24577889999986554 5567899999999998877664 4456
Q ss_pred EEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC-cEEEEeccCCCC
Q 044557 188 INAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR-SIIVWEKEEDDG 264 (362)
Q Consensus 188 v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-~i~~wd~~~~~~ 264 (362)
..+++++|++. ++++..++.+.+|+..+...... + .+...+..++++|++..+++++.+. .+.+|+.....
T Consensus 118 ~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 191 (301)
T d1l0qa2 118 PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT----V-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS- 191 (301)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE----E-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-
T ss_pred ceEEEeecCCCeeeeeeccccceeeeeccccceeee----c-ccCCCceEEEeeccccceeeeccccccccccccccee-
Confidence 78899999997 34667789999999877643222 2 2344578899999999988887764 55566654321
Q ss_pred cEEEEEeecCccceeEEEEEeCC--eEEEe---eCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCc
Q 044557 265 NILVVGALRGHTKSILCMAVVSD--LVCSG---SADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTS 339 (362)
Q Consensus 265 ~~~~~~~~~~h~~~v~~~~~~~~--~~~s~---s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~ 339 (362)
....... ...+..+.+.++ .++.+ ..++.|++||.. +.+.+..+..+ ..+.+++|+|+++
T Consensus 192 ---~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~--t~~~~~~~~~~-~~~~~va~spdg~-------- 256 (301)
T d1l0qa2 192 ---VIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG--TNKITARIPVG-PDPAGIAVTPDGK-------- 256 (301)
T ss_dssp ---EEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT--TTEEEEEEECC-SSEEEEEECTTSS--------
T ss_pred ---eeecccc-cCCcceeeccccccccccccccceeeeeeeeecC--CCeEEEEEcCC-CCEEEEEEeCCCC--------
Confidence 2222332 334556667543 33332 445789999964 34556666543 4689999987754
Q ss_pred eEEEecCCCCcEEEEeccc
Q 044557 340 YLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 340 ~~l~s~s~D~~i~~W~~~~ 358 (362)
+++++++.|++|++||++.
T Consensus 257 ~l~va~~~~~~i~v~D~~t 275 (301)
T d1l0qa2 257 KVYVALSFCNTVSVIDTAT 275 (301)
T ss_dssp EEEEEETTTTEEEEEETTT
T ss_pred EEEEEECCCCeEEEEECCC
Confidence 4567889999999999864
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.82 E-value=2.7e-19 Score=157.73 Aligned_cols=186 Identities=13% Similarity=0.077 Sum_probs=144.8
Q ss_pred EEEEec-CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC--CeEEEEeCCCCCCccee
Q 044557 147 ALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD--KKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 147 ~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d--g~i~iw~~~~~~~~~~~ 222 (362)
.-.||| ||+++|+++ ++.|++||+++++..+ + .|...|.+++|+|+|+ +++++.+ ..|++||..++...
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~--- 79 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE--- 79 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE---
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE---
Confidence 456999 999999887 5899999999887654 2 6889999999999997 5555544 37999999876422
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEE---------
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCS--------- 291 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s--------- 291 (362)
.+..|...|.+++|+|||++|++++.++.+++|+...... ...+..|...+.+++|+++ +++.
T Consensus 80 --~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~ 153 (360)
T d1k32a3 80 --KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP----TVIERSREAMITDFTISDNSRFIAYGFPLKHGET 153 (360)
T ss_dssp --ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred --EeeCCCceEEeeeecccccccceeccccccccccccccce----eeeeecccccccchhhccceeeeeeeccccccce
Confidence 3456889999999999999999999999999999976442 2345667788888888765 5653
Q ss_pred -eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 292 -GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 292 -~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+..++.+++|+.... . ...+..|...+..++|+|++ ..|++++.|+.+++|+..
T Consensus 154 ~~~~~~~~~v~d~~~~--~-~~~~~~~~~~~~~~~~spdg---------~~l~~~s~~~~~~~~d~~ 208 (360)
T d1k32a3 154 DGYVMQAIHVYDMEGR--K-IFAATTENSHDYAPAFDADS---------KNLYYLSYRSLDPSPDRV 208 (360)
T ss_dssp CSCCEEEEEEEETTTT--E-EEECSCSSSBEEEEEECTTS---------CEEEEEESCCCCCEECSS
T ss_pred eeccccceeeeccccC--c-eeeecccccccccccccCCC---------CEEEEEeCCCceEccccc
Confidence 455677999996442 2 33455677788888887764 468899999999999864
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=8.6e-19 Score=159.51 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=130.6
Q ss_pred EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceee
Q 044557 31 FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRL 108 (362)
Q Consensus 31 ~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~ 108 (362)
++++.+.||+|+|||..+... ...+ ..+ ..+..+.+++| ++++++.|++|++||+.+.+... .
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v--~~~~-------~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~-----~ 98 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEI--KTVL-------DTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-----V 98 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCE--EEEE-------ECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-----E
T ss_pred EEEEEcCCCEEEEEECCCCcE--EEEE-------eCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE-----E
Confidence 469999999999999877542 1111 122 24667788765 59999999999999987654211 0
Q ss_pred eeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE-EEEECCCcEEEEECCCceEEEeeec-----
Q 044557 109 ATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL-YSVSWDRTIKIWRTSDFKCLESITN----- 182 (362)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~----- 182 (362)
..++ ...+|.+.+.+.+|+|||++| ++++.++.|++||..+++++..+..
T Consensus 99 ~~i~------------------------~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~ 154 (432)
T d1qksa2 99 AEIK------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 154 (432)
T ss_dssp EEEE------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred EEEe------------------------cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc
Confidence 0010 011344556666788999975 6788899999999999887765431
Q ss_pred -----cCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC-CcE
Q 044557 183 -----AHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD-RSI 254 (362)
Q Consensus 183 -----~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-~~i 254 (362)
.+......+.++|+|. +++...++.|.+|+..+.+... . ..+ .+...+..++|+|||+++++++.+ +.+
T Consensus 155 ~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~-~-~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v 231 (432)
T d1qksa2 155 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-T-TEI-SAERFLHDGGLDGSHRYFITAANARNKL 231 (432)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-E-EEE-ECCSSEEEEEECTTSCEEEEEEGGGTEE
T ss_pred cceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce-E-EEE-cccCccccceECCCCCEEEEeccccceE
Confidence 2344567788999986 4567788999999987654221 1 111 234567889999999988877754 567
Q ss_pred EEEeccC
Q 044557 255 IVWEKEE 261 (362)
Q Consensus 255 ~~wd~~~ 261 (362)
.++|...
T Consensus 232 ~v~d~~~ 238 (432)
T d1qksa2 232 VVIDTKE 238 (432)
T ss_dssp EEEETTT
T ss_pred EEeeccc
Confidence 8888764
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=1.6e-18 Score=151.11 Aligned_cols=274 Identities=10% Similarity=0.045 Sum_probs=168.8
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE-EEecCCcEEEEecCCCCCCcccce
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF-SAHQDHKIRVWKINNQEPDHQKYT 106 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-s~~~dg~i~~w~~~~~~~~~~~~~ 106 (362)
+|++|++.|++|++||+++... ....... .....+..+.+++| .++ +++.++.|.+||+.+++...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~--~~~i~~~-----~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~---- 70 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAV--DKVITIA-----DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG---- 70 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE--EEEEECT-----TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE----
T ss_pred eEEEEEcCCCEEEEEECCCCeE--EEEEECC-----CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEE----
Confidence 5899999999999999876431 1111100 01123556777765 354 56689999999998754211
Q ss_pred eeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE------------CCCcEEEEECCCc
Q 044557 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS------------WDRTIKIWRTSDF 174 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------------~d~~i~iwd~~~~ 174 (362)
..+... ...+...+..++|+|+++++++++ .+..+.+||..++
T Consensus 71 ---~~~~~~----------------------~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (337)
T d1pbyb_ 71 ---RIDLST----------------------PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL 125 (337)
T ss_dssp ---EEECCB----------------------TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT
T ss_pred ---EEecCC----------------------CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC
Confidence 110000 001223455789999999988876 4678999999999
Q ss_pred eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhh-----------------c--ccccee
Q 044557 175 KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLE-----------------R--HNSGIN 234 (362)
Q Consensus 175 ~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~-----------------~--h~~~v~ 234 (362)
+....+. +...+..++|+|+|+ +++++. .+.+||..++........... . +.....
T Consensus 126 ~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (337)
T d1pbyb_ 126 SRRKAFE--APRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp EEEEEEE--CCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred eEEEecc--ccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeee
Confidence 8877764 345678899999997 666654 477898876542221110000 0 000011
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEe
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l 314 (362)
......+...+..++.++.+.+|+...... ....+..+...+.++.+.++.....+.|+.|++||... .+.+..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~ 276 (337)
T d1pbyb_ 202 FYTARKDIDPADPTAYRTGLLTMDLETGEM---AMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEK--NASIKRV 276 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCE---EEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTT--TEEEEEE
T ss_pred eeeeeeccceeeecccCccEEEEEcCCCcE---EEEEecCCCcceEEEEecccceEEEEccccEEEEECCC--CcEEEEE
Confidence 111122333333445566788888875432 22233445666677777765322234468999999643 4556665
Q ss_pred cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 315 EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 315 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
. +...+.+++|+|++. +|++|+.|++|++||...
T Consensus 277 ~-~~~~~~~~~~s~dG~---------~l~v~~~~~~i~v~D~~t 310 (337)
T d1pbyb_ 277 P-LPHSYYSVNVSTDGS---------TVWLGGALGDLAAYDAET 310 (337)
T ss_dssp E-CSSCCCEEEECTTSC---------EEEEESBSSEEEEEETTT
T ss_pred c-CCCCEEEEEECCCCC---------EEEEEeCCCcEEEEECCC
Confidence 4 566789999987653 588899999999999863
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.4e-15 Score=132.13 Aligned_cols=282 Identities=14% Similarity=0.205 Sum_probs=173.6
Q ss_pred EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe-cCCcEEEEecCCCCCCccccee
Q 044557 31 FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH-QDHKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 31 ~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~-~dg~i~~w~~~~~~~~~~~~~~ 107 (362)
.+++++.|++|++|+++......... ...+.+.+..+.+++| .|++++ .|+.|++|++.........
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~-------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~--- 75 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQ-------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--- 75 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEE-------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE---
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEE-------EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE---
Confidence 45788899999999987532111000 0123456788888876 475555 5899999998654321100
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC-CCcEEEEECCCceEEEeee-ccCc
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW-DRTIKIWRTSDFKCLESIT-NAHD 185 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~-~~h~ 185 (362)
.....+...+..++|+|||++|++++. ++.|.+|+........... ..+.
T Consensus 76 ----------------------------~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 127 (333)
T d1ri6a_ 76 ----------------------------AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL 127 (333)
T ss_dssp ----------------------------EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC
T ss_pred ----------------------------eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCC
Confidence 000123345678999999999998875 6789999877665433222 2455
Q ss_pred ccEEEEEEcCCCc-EEE-EeCCCeEEEEeCCCCCCcceeeh--hhhccccceeEEEEecCCCEEEEEc-CCCcEEEEecc
Q 044557 186 DAINAVALSDDGD-VYT-GSADKKIKVWRRSPGNKKHSLVD--VLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKE 260 (362)
Q Consensus 186 ~~v~~v~~~~~~~-~~s-~~~dg~i~iw~~~~~~~~~~~~~--~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~ 260 (362)
..+.++.++|+++ ++. ...+..|.+|+............ ...........++|++++.+++... ..+...+|+..
T Consensus 128 ~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~ 207 (333)
T d1ri6a_ 128 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 207 (333)
T ss_dssp TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred ccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeec
Confidence 6678899999997 444 44667899999876542211110 1112234457899999998877554 55677888765
Q ss_pred CCCCcEEEEEeecC------ccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCce-eeeeEecCCCCcEEEEEeeecC
Q 044557 261 EDDGNILVVGALRG------HTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNY-TCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 261 ~~~~~~~~~~~~~~------h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~-~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
.............. .......+.++++ +++++..++.+.+|+...... ..+.....+...+..++|+|++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDG 287 (333)
T d1ri6a_ 208 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG 287 (333)
T ss_dssp CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS
T ss_pred ccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCC
Confidence 44333222222211 1223345556544 567778888999998643322 2222233345567788998765
Q ss_pred CccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 331 DRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 331 ~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+ +++++++.+++|++|+++.
T Consensus 288 k--------~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 288 K--------YLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp S--------EEEEECTTTCEEEEEEEET
T ss_pred C--------EEEEEECCCCeEEEEEEEC
Confidence 3 4567778889999997753
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.75 E-value=1.2e-17 Score=146.00 Aligned_cols=270 Identities=10% Similarity=0.037 Sum_probs=161.5
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEe-ecceeEEEEEcCc--ee-EEEecCCcEEEEecCCCCCCcc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAV-GKGAVKSLVVLAD--KL-FSAHQDHKIRVWKINNQEPDHQ 103 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~--~l-~s~~~dg~i~~w~~~~~~~~~~ 103 (362)
.++|+++++.|++|.+||+.+.+. .... .. +......+.+.+| .+ ++++.++.|.+||+.+.+...
T Consensus 7 ~~~~l~~~~~~~~v~v~D~~t~~~--~~t~-------~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~- 76 (346)
T d1jmxb_ 7 GHEYMIVTNYPNNLHVVDVASDTV--YKSC-------VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF- 76 (346)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEE--EEEE-------ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-
T ss_pred CCcEEEEEcCCCEEEEEECCCCCE--EEEE-------EcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee-
Confidence 578999999999999999986431 1111 11 1223457777766 35 455678999999987653210
Q ss_pred cceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE------------CCCcEEEEEC
Q 044557 104 KYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS------------WDRTIKIWRT 171 (362)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------------~d~~i~iwd~ 171 (362)
....... ...+...+..++|+|||+++++++ .++.+.+|+.
T Consensus 77 ------~~~~~~~---------------------~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~ 129 (346)
T d1jmxb_ 77 ------HANLSSV---------------------PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 129 (346)
T ss_dssp ------EEESCCS---------------------TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred ------eeccccc---------------------ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEec
Confidence 0000000 001223456788999999988775 4778899988
Q ss_pred CCceEEEeeec-cCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC---------
Q 044557 172 SDFKCLESITN-AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD--------- 241 (362)
Q Consensus 172 ~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--------- 241 (362)
.+++....+.. .....+..+.+++++.++..+ +.+.+|+..++.....+ ..+ .....+.++|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~ 202 (346)
T d1jmxb_ 130 ADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVAL----PLR-NWNRKGYSAPDVLYFWPHQS 202 (346)
T ss_dssp GGGGGBCCSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEE----CST-TCCCTTBCCCBCCCCCCCCC
T ss_pred ccceeeeEEEeeeccCceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEE----ecC-CCccceEEeccccEEEEEec
Confidence 77654332221 112345556778888866654 45888988765432221 111 11122222333
Q ss_pred -----------------CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 242 -----------------GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 242 -----------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
...++++..+..+.+|+....... ......|...+..+.++++ .++..+. +.|++||
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d 278 (346)
T d1jmxb_ 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH---TQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYD 278 (346)
T ss_dssp TTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEE
T ss_pred CCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE---EEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEE
Confidence 334445555666777777654321 2234456666777776543 5555544 5799999
Q ss_pred CCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
... .+.+..+. +...+.+++|+|++. +|++|+.|+.|++||+.
T Consensus 279 ~~~--~~~~~~~~-~~~~~~~va~s~DG~---------~l~v~~~d~~v~v~D~~ 321 (346)
T d1jmxb_ 279 LKQ--RKLIKAAN-LDHTYYCVAFDKKGD---------KLYLGGTFNDLAVFNPD 321 (346)
T ss_dssp TTT--TEEEEEEE-CSSCCCEEEECSSSS---------CEEEESBSSEEEEEETT
T ss_pred CCC--CcEEEEEc-CCCCEEEEEEcCCCC---------EEEEEeCCCcEEEEECc
Confidence 643 45555554 445699999988754 48889999999999996
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.70 E-value=4.6e-14 Score=120.48 Aligned_cols=246 Identities=16% Similarity=0.200 Sum_probs=161.1
Q ss_pred cceeeecccCccceeeeEec--CcEE-EEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--e-eE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFL-YTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--K-LF 82 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l-~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~-l~ 82 (362)
.+.+++++.. ..+..++++ |++| ++++.+++|++||+.+... ...+. .+ .....+.+..+ . ++
T Consensus 22 ~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~--~~~~~-------~~-~~~~~~~~~~~~~~~~~ 90 (301)
T d1l0qa2 22 NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATVP-------AG-SSPQGVAVSPDGKQVYV 90 (301)
T ss_dssp TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEEE-------CS-SSEEEEEECTTSSEEEE
T ss_pred CeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce--eeeee-------cc-ccccccccccccccccc
Confidence 4566666644 345778884 6766 6788899999999876431 11111 11 12344555443 3 44
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE-EEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY-SVS 161 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s 161 (362)
++..++.+.+|+...... . ....+.....++.++|+++.++ ++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~-------~----------------------------~~~~~~~~~~~~~~~~dg~~~~~~~~ 135 (301)
T d1l0qa2 91 TNMASSTLSVIDTTSNTV-------A----------------------------GTVKTGKSPLGLALSPDGKKLYVTNN 135 (301)
T ss_dssp EETTTTEEEEEETTTTEE-------E----------------------------EEEECSSSEEEEEECTTSSEEEEEET
T ss_pred cccccceeeeccccccee-------e----------------------------eeccccccceEEEeecCCCeeeeeec
Confidence 556678899998764321 0 1112345567899999998765 455
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS-ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
.++.+.+|+..+.+.+..+. +...+..++++|++. +++++ .++.+.+|+..... ..... .....+..++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~ 208 (301)
T d1l0qa2 136 GDKTVSVINTVTKAVINTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS----VIDTV-KVEAAPSGIAVN 208 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEEEE-ECSSEEEEEEEC
T ss_pred cccceeeeeccccceeeecc--cCCCceEEEeeccccceeeeccccccccccccccee----eeecc-cccCCcceeecc
Confidence 68889999999998887664 345678899999886 55554 45677788765442 11111 234456789999
Q ss_pred cCCCEEEEEcC---CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--e-EEEeeCCCcEEEeeCCCCceeeeeE
Q 044557 240 CDGSVLYSGAC---DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--L-VCSGSADKTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 240 ~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~~s~s~D~~i~~W~~~~~~~~~~~~ 313 (362)
+++..++.++. +++|++||..+.+ ....+.. ...+.+++++++ + +++++.|+.|++||... .+.+++
T Consensus 209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~----~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t--~~~~~~ 281 (301)
T d1l0qa2 209 PEGTKAYVTNVDKYFNTVSMIDTGTNK----ITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT--NTITAT 281 (301)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTE----EEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEE
T ss_pred ccccccccccccceeeeeeeeecCCCe----EEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC--CeEEEE
Confidence 99998876644 4679999987643 2333433 345788999875 4 57888999999999643 455555
Q ss_pred e
Q 044557 314 L 314 (362)
Q Consensus 314 l 314 (362)
+
T Consensus 282 ~ 282 (301)
T d1l0qa2 282 M 282 (301)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=4e-13 Score=116.34 Aligned_cols=236 Identities=16% Similarity=0.216 Sum_probs=147.7
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
+++++.|++|++|+++..... .......|.+.+..++|+|||++|+++
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l--------------------------------~~~~~~~~~~~v~~la~spDG~~L~v~ 54 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGAL--------------------------------TLTQVVDVPGQVQPMVVSPDKRYLYVG 54 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCE--------------------------------EEEEEEECSSCCCCEEECTTSSEEEEE
T ss_pred EEECCCCCcEEEEEEcCCCCe--------------------------------EEEEEEcCCCCEeEEEEeCCCCEEEEE
Confidence 456778999999998743210 001113466788999999999998665
Q ss_pred E-CCCcEEEEECCCceEEEee--eccCcccEEEEEEcCCCc-EEEEe-CCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 161 S-WDRTIKIWRTSDFKCLESI--TNAHDDAINAVALSDDGD-VYTGS-ADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 161 s-~d~~i~iwd~~~~~~~~~~--~~~h~~~v~~v~~~~~~~-~~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
+ .|+.|++|++........+ ...+...+..++|+|+|+ +++++ .++.|.+|+........ ......+...+.+
T Consensus 55 ~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~ 132 (333)
T d1ri6a_ 55 VRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG--VVDVVEGLDGCHS 132 (333)
T ss_dssp ETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE--EEEEECCCTTBCC
T ss_pred ECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccccccee--cccccCCCccceE
Confidence 5 5899999998764322111 112334567899999998 66665 57799999876543221 2223345667888
Q ss_pred EEEecCCCEEEEEcCC-CcEEEEeccCCCCcEEEEE--eecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCc--
Q 044557 236 LALSCDGSVLYSGACD-RSIIVWEKEEDDGNILVVG--ALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRN-- 307 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~-- 307 (362)
+.++|++++++.++.+ ..|.+|+............ ...........++++++ .+.+....+...+|+.....
T Consensus 133 v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 212 (333)
T d1ri6a_ 133 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 212 (333)
T ss_dssp CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred EEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccc
Confidence 9999999988877754 5688999765433221111 11123344567888654 34555666777888743222
Q ss_pred eeeeeEec------CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 308 YTCLAVLE------GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 308 ~~~~~~l~------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
......+. ........+++++++ ..+++++..++.+++|++..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~--------~~~~~~~~~~~~~~~~~~~~ 261 (333)
T d1ri6a_ 213 IECVQTLDMMPENFSDTRWAADIHITPDG--------RHLYACDRTASLITVFSVSE 261 (333)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTS--------SEEEEEETTTTEEEEEEECT
T ss_pred eeeeeeeeeeecCCCccccceeEEEeccc--------CceeeecccCCeEEEEEEcC
Confidence 11111211 223345666666543 35677788889999998854
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.60 E-value=2.6e-12 Score=113.18 Aligned_cols=182 Identities=9% Similarity=-0.024 Sum_probs=119.5
Q ss_pred ecCceeEEEEecCCCE-EEEEECCCcEEEEECCCceEEEeeec-----cCcccEEEEEEcCCCcEEEEeCCCeEEEEeCC
Q 044557 141 HVDAVSALALTKDETL-LYSVSWDRTIKIWRTSDFKCLESITN-----AHDDAINAVALSDDGDVYTGSADKKIKVWRRS 214 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~ 214 (362)
+.....++.++|+++. +++.+.|+.+.+|+....+....... ........+.+.+++.++..+.++.+.+|+..
T Consensus 163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 242 (373)
T d2madh_ 163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS 242 (373)
T ss_pred EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcC
Confidence 4445678889999875 56788999999999988776554321 11122344556677778888899999999987
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeC
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSA 294 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~ 294 (362)
..... .......+......+.+.|.+...++.+.|+...++-. ..+..+++...
T Consensus 243 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------------------------~~~~~~~~~~~ 296 (373)
T d2madh_ 243 AAGAT--NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT------------------------SEQSAWKLHAA 296 (373)
T ss_pred CCeEE--EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEec------------------------CCCceEEeecC
Confidence 65321 12222334444555566666666666665554322211 11235667778
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++.|.+|+... .+.+..+. +...+..++|+|+++. .++++++.|++|++||+..
T Consensus 297 ~~~v~~~d~~t--~~~~~~~~-~~~~~~~~a~spDG~~-------~l~vt~~~d~~v~v~D~~t 350 (373)
T d2madh_ 297 AKEVTSVTGLV--GQTSSQIS-LGHDVDAISVAQDGGP-------DLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred CCeEEEEECCC--CcEEEEec-CCCCeeEEEECCCCCE-------EEEEEeCCCCeEEEEECCC
Confidence 88999999543 44455554 6677999999887642 3567899999999999863
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.56 E-value=3.4e-13 Score=118.03 Aligned_cols=277 Identities=12% Similarity=0.019 Sum_probs=157.7
Q ss_pred eeeEecCcEEEEe-----cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eEEE----------e
Q 044557 23 SSLALAGKFLYTG-----SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LFSA----------H 85 (362)
Q Consensus 23 ~~l~~~~~~l~t~-----s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~s~----------~ 85 (362)
.+.+.+++.++.. ..+.+|.+||..+.. ..... . .+....+.+++|. |+.+ .
T Consensus 7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~--~~~~~-------~--~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~ 75 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMI-------D--GGFLPNPVVADDGSFIAHASTVFSRIARGE 75 (355)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEE-------E--ECSSCEEEECTTSSCEEEEEEEEEETTEEE
T ss_pred EeeCCCCCEEEEEecccCCCcCeEEEEECCCCc--EEEEE-------E--CCCCCceEEcCCCCEEEEEeCCCccccccC
Confidence 3444567765543 456789999987643 11111 1 1222345666553 5543 4
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE--CC
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS--WD 163 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~d 163 (362)
.|+.|++||..+...... + ..+.... .........++|+|+++.++.++ .+
T Consensus 76 ~d~~v~v~D~~t~~~~~~----~-~~~~~~~----------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~ 128 (355)
T d2bbkh_ 76 RTDYVEVFDPVTLLPTAD----I-ELPDAPR----------------------FLVGTYPWMTSLTPDGKTLLFYQFSPA 128 (355)
T ss_dssp EEEEEEEECTTTCCEEEE----E-EETTCCC----------------------CCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred CCCEEEEEECCCCCEEEE----E-ecCCcce----------------------eecCCCCceEEEecCCCeeEEecCCCC
Confidence 578999999976542110 0 0000000 00112234578999999887765 45
Q ss_pred CcEEEEECCCceEEEeeeccCcc------cEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 164 RTIKIWRTSDFKCLESITNAHDD------AINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~------~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
..+.+|+..+++.+..+...... ....+.+++++. + +....++.+.+++..... ..+...+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 199 (355)
T d2bbkh_ 129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH---------PEDEFLINH 199 (355)
T ss_dssp CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS---------CTTSCBCSC
T ss_pred ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc---------ceecceeee
Confidence 78999999999887766432111 122344555554 1 222333444444433221 123444566
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccc----------eeEEEEEeCC--eEEEeeC---------
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK----------SILCMAVVSD--LVCSGSA--------- 294 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~----------~v~~~~~~~~--~~~s~s~--------- 294 (362)
..+.+++..++.++.++.+++|++..+.. ..+....++.. ....++++++ .++..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 277 (355)
T d2bbkh_ 200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDA--KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT 277 (355)
T ss_dssp CEEETTTTEEEEEBTTSEEEEEECTTSSC--EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred ccccCCCCeEEEecCCCeEEEEecCCCcE--EEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecC
Confidence 77888999999999999999999876432 22222222221 1122444432 3333222
Q ss_pred -CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 295 -DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 295 -D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+..|.+|+... .+.+..+. +...+.+++|+|+++. .++++++.|++|++||+..
T Consensus 278 ~~~~v~v~d~~t--~~~~~~~~-~~~~~~~~a~spDG~~-------~l~v~~~~d~~i~v~D~~t 332 (355)
T d2bbkh_ 278 ASRFVVVLDAKT--GERLAKFE-MGHEIDSINVSQDEKP-------LLYALSTGDKTLYIHDAES 332 (355)
T ss_dssp CEEEEEEEETTT--CCEEEEEE-EEEEECEEEECCSSSC-------EEEEEETTTTEEEEEETTT
T ss_pred CCCeEEEEeCCC--CcEEEEec-CCCCEEEEEEcCCCCe-------EEEEEECCCCEEEEEECCC
Confidence 24688998543 44555554 3456889999887542 3677889999999999864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=1.3e-12 Score=112.83 Aligned_cols=252 Identities=9% Similarity=0.034 Sum_probs=149.2
Q ss_pred cceeeeccc--CccceeeeEec--CcEE-EEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--ee
Q 044557 9 HHCLTTLKG--HNSYVSSLALA--GKFL-YTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KL 81 (362)
Q Consensus 9 ~~~~~tl~g--H~~~V~~l~~~--~~~l-~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l 81 (362)
.++++++.. +...+.+++++ |+++ ++++.|+.|++||+.+.............. .......+.+.++ .+
T Consensus 21 ~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~----~~~~~~~v~~s~dg~~l 96 (337)
T d1pbyb_ 21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----RVKSLFGAALSPDGKTL 96 (337)
T ss_dssp TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----EEECTTCEEECTTSSEE
T ss_pred CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc----cccceeeEEEcCCCcEE
Confidence 456666654 44567888884 7776 677889999999988754211111000000 0111223444433 35
Q ss_pred EEEec------------CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEE
Q 044557 82 FSAHQ------------DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALA 149 (362)
Q Consensus 82 ~s~~~------------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 149 (362)
+.+.. +..+.+||...... .....+...+.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------------------------------~~~~~~~~~~~~~~ 141 (337)
T d1pbyb_ 97 AIYESPVRLELTHFEVQPTRVALYDAETLSR-----------------------------------RKAFEAPRQITMLA 141 (337)
T ss_dssp EEEEEEEEECSSCEEECCCEEEEEETTTTEE-----------------------------------EEEEECCSSCCCEE
T ss_pred EEeecCCcceeeeccccccceeeccccCCeE-----------------------------------EEeccccCCceEEE
Confidence 55543 34444554432210 01112345577899
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-------------------------CcEEEEeC
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-------------------------GDVYTGSA 204 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-------------------------~~~~s~~~ 204 (362)
++|+++++++++. .+.+||..+++....+... ... ....+.|+ .....+..
T Consensus 142 ~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T d1pbyb_ 142 WARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQ-SWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp ECTTSSCEEEESS--SEEEEETTTTEEEEEECST-TTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EcCCCCEEEEEcC--CcceeeeecCcEEEEeecC-Ccc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeeccc
Confidence 9999999998864 5788999988876654321 100 00011111 11122334
Q ss_pred CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE
Q 044557 205 DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV 284 (362)
Q Consensus 205 dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~ 284 (362)
++.+.+|+..++.... .....+...+..+.++|++.+++.+ ++.|++||+.+.. .+..+ .+...+.+++|
T Consensus 218 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~----~~~~~-~~~~~~~~~~~ 287 (337)
T d1pbyb_ 218 RTGLLTMDLETGEMAM---REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA----SIKRV-PLPHSYYSVNV 287 (337)
T ss_dssp EEEEEEEETTTCCEEE---EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE----EEEEE-ECSSCCCEEEE
T ss_pred CccEEEEEcCCCcEEE---EEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCc----EEEEE-cCCCCEEEEEE
Confidence 5568888887764321 1233456677888999999998876 5889999998643 22222 24566889999
Q ss_pred eCC--eEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 285 VSD--LVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 285 ~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
+++ ++++++.|++|++||.. +.+.++++.
T Consensus 288 s~dG~~l~v~~~~~~i~v~D~~--t~~~v~~i~ 318 (337)
T d1pbyb_ 288 STDGSTVWLGGALGDLAAYDAE--TLEKKGQVD 318 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETT--TCCEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECC--CCcEEEEEE
Confidence 865 88999999999999964 345555543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.41 E-value=6.4e-13 Score=115.33 Aligned_cols=115 Identities=10% Similarity=0.088 Sum_probs=88.4
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeeh-
Q 044557 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVD- 224 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~- 224 (362)
+++++++++|++++.|++|.+||+.+++.+.++...|...+.+++|+|||+ + +++..++.|.+||+.+++.......
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 367899999999999999999999999999888766777788999999997 4 5667899999999988754332211
Q ss_pred -hhhccccceeEEEEecCCCEEEEEcC------------CCcEEEEeccCC
Q 044557 225 -VLERHNSGINALALSCDGSVLYSGAC------------DRSIIVWEKEED 262 (362)
Q Consensus 225 -~~~~h~~~v~~i~~s~~~~~l~s~~~------------d~~i~~wd~~~~ 262 (362)
....+...+..++|+|||+++++++. ++.+.+|+....
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~ 132 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG 132 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence 11122334678999999999988763 566777776643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.33 E-value=2.1e-10 Score=99.79 Aligned_cols=270 Identities=17% Similarity=0.151 Sum_probs=147.3
Q ss_pred cceeeecccCccceeeeEe--cCcEEEEe----------cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE
Q 044557 9 HHCLTTLKGHNSYVSSLAL--AGKFLYTG----------SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV 76 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~--~~~~l~t~----------s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 76 (362)
.+.+.++..+..+ .++| +|++|+.. +.|+.|++||..+......... ......... .....+.+
T Consensus 38 g~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~-~~~~~~~~~-~~~~~~~~ 113 (355)
T d2bbkh_ 38 GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL-PDAPRFLVG-TYPWMTSL 113 (355)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE-TTCCCCCBS-CCGGGEEE
T ss_pred CcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEec-CCcceeecC-CCCceEEE
Confidence 3456666655544 4555 57766653 4589999999876432111110 000000000 11122344
Q ss_pred cCc--eeEEE--ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec
Q 044557 77 LAD--KLFSA--HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK 152 (362)
Q Consensus 77 ~~~--~l~s~--~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 152 (362)
.++ .++.+ +.+..+.+|+....... ..++... .....-......+.+++
T Consensus 114 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 166 (355)
T d2bbkh_ 114 TPDGKTLLFYQFSPAPAVGVVDLEGKAFK-------RMLDVPD--------------------CYHIFPTAPDTFFMHCR 166 (355)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEE-------EEEECCS--------------------EEEEEEEETTEEEEEET
T ss_pred ecCCCeeEEecCCCCceeeeeecCCCcEe-------eEEecCC--------------------cceEeecCCcceEEEcC
Confidence 443 35544 34567888887654311 0000000 00001112334566777
Q ss_pred CCCEEEEEE-CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEEEEeCCCeEEEEeCCCCCCcceeehhh----
Q 044557 153 DETLLYSVS-WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVYTGSADKKIKVWRRSPGNKKHSLVDVL---- 226 (362)
Q Consensus 153 ~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~---- 226 (362)
|++.++... .++.+.+++...... .+...+....+.++ +.++.++.++.+.+|++..+... .....
T Consensus 167 dg~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~ 238 (355)
T d2bbkh_ 167 DGSLAKVAFGTEGTPEITHTEVFHP------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK--FLPAVEALT 238 (355)
T ss_dssp TSCEEEEECCSSSCCEEEECCCCSC------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE--ECCCEESSC
T ss_pred CCCEEEEEecCCCeEEEEecccccc------eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE--EEeccCCcc
Confidence 777665543 344555555443321 23333444455544 45888899999999998765421 11111
Q ss_pred ------hccccceeEEEEecCCCEEEEEcCC----------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---
Q 044557 227 ------ERHNSGINALALSCDGSVLYSGACD----------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--- 287 (362)
Q Consensus 227 ------~~h~~~v~~i~~s~~~~~l~s~~~d----------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--- 287 (362)
.........+++++++..++....+ +.|.+||..+.+. +..+. +...+.+++++++
T Consensus 239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~----~~~~~-~~~~~~~~a~spDG~~ 313 (355)
T d2bbkh_ 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER----LAKFE-MGHEIDSINVSQDEKP 313 (355)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEE-EEEEECEEEECCSSSC
T ss_pred cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE----EEEec-CCCCEEEEEEcCCCCe
Confidence 1112334568899999988876544 3689999886542 22333 3455788899864
Q ss_pred -eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEE
Q 044557 288 -LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324 (362)
Q Consensus 288 -~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~ 324 (362)
++++++.|+.|++||.. +++.++++.++...-..+
T Consensus 314 ~l~v~~~~d~~i~v~D~~--tg~~~~~i~~~G~~p~~i 349 (355)
T d2bbkh_ 314 LLYALSTGDKTLYIHDAE--SGEELRSVNQLGHGPQVI 349 (355)
T ss_dssp EEEEEETTTTEEEEEETT--TCCEEEEECCCCSSCCEE
T ss_pred EEEEEECCCCEEEEEECC--CCCEEEEEeCcCCCccEE
Confidence 46788889999999964 456677777665444433
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.28 E-value=2.4e-09 Score=93.75 Aligned_cols=203 Identities=8% Similarity=-0.049 Sum_probs=124.0
Q ss_pred EEEEecCCCEEEEEE----------CCCcEEEEECCCceEEEeeeccCcccE-------EEEEEcCCCc-EEE--EeCCC
Q 044557 147 ALALTKDETLLYSVS----------WDRTIKIWRTSDFKCLESITNAHDDAI-------NAVALSDDGD-VYT--GSADK 206 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s----------~d~~i~iwd~~~~~~~~~~~~~h~~~v-------~~v~~~~~~~-~~s--~~~dg 206 (362)
.++|+|||++|++++ .++.|.+||..+++.+..+.. +.... ..+.|+++++ ++. ...++
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~ 148 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL-PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP 148 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEec-CCcceeEeccCCCcEEEEeCCCcEEEEEEcCCC
Confidence 688999999998875 457899999999988776642 32222 4467788876 333 34566
Q ss_pred eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE-EEEcCCCcEEEEeccCCCCcEEEEEeec--CccceeEEEE
Q 044557 207 KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL-YSGACDRSIIVWEKEEDDGNILVVGALR--GHTKSILCMA 283 (362)
Q Consensus 207 ~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~h~~~v~~~~ 283 (362)
.+.+|+...... ..+.....++.++|+|+.+ ++.+.|+.+.+|+............... ++........
T Consensus 149 ~~~~~~~~~~~~--------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (373)
T d2madh_ 149 AVGLVVQGGSSD--------DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQ 220 (373)
T ss_pred ceEEeeccCCeE--------EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEE
Confidence 788888765431 1233446678999998765 6888999999999876433222211111 1112223334
Q ss_pred EeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcE----------EEEEeeecCCccC-CCCCceEEEecCCCCcE
Q 044557 284 VVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPV----------KCLAAAIDNDRCD-SSDTSYLVCSGSLDCDI 351 (362)
Q Consensus 284 ~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v----------~~~~~~~~~~~~~-~~~~~~~l~s~s~D~~i 351 (362)
+.++ .++..+.++.+.+|+...........+..+...+ ..+++++++.... ....+..+++...++.+
T Consensus 221 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v 300 (373)
T d2madh_ 221 ANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred ECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeE
Confidence 4444 5677788999999986544333333444443333 3344444443221 12223445677788899
Q ss_pred EEEeccc
Q 044557 352 KVWQISF 358 (362)
Q Consensus 352 ~~W~~~~ 358 (362)
.+||...
T Consensus 301 ~~~d~~t 307 (373)
T d2madh_ 301 TSVTGLV 307 (373)
T ss_pred EEEECCC
Confidence 9999854
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.14 E-value=8.8e-10 Score=96.78 Aligned_cols=195 Identities=10% Similarity=0.026 Sum_probs=112.0
Q ss_pred eEEEEecCCCEEEEEE-CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee-
Q 044557 146 SALALTKDETLLYSVS-WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV- 223 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~- 223 (362)
..++|+|||++|+.+. .++.+.+||+.+++....+... .... +.-.+...+++.+.||++..++...........
T Consensus 127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~-~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~ 203 (368)
T d1mdah_ 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA-SCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS-SCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeecc-Ccce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence 4578999999988876 5699999999999887766532 2211 111122235667778888888766543221111
Q ss_pred -hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc----------ceeEEEEEeC--CeE-
Q 044557 224 -DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT----------KSILCMAVVS--DLV- 289 (362)
Q Consensus 224 -~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~----------~~v~~~~~~~--~~~- 289 (362)
.....+...+..+.+.+++..+.+.+ +.+.+++...+.. ........+. .....+++++ +.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 279 (368)
T d1mdah_ 204 AQCTGAQNCSSQAAQANYPGMLVWAVA--SSILQGDIPAAGA--TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM 279 (368)
T ss_dssp CCSCTTSCBCSCCEEETTTTEEEECBS--SCCEEEECCSSCC--EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred cccccccccceeecccccCcEEEEecC--CCEEEEeecCCce--EEEeecccccceeeeeeecCCCceeEEEcCCCCEEE
Confidence 11223344455667777777666554 4555666543221 1122221111 0111233433 332
Q ss_pred EEeeC--------CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 290 CSGSA--------DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 290 ~s~s~--------D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+.... ...|.+||.. ..+.+..+. +...+..++|+|+++. .++++++.|++|++||..
T Consensus 280 v~~~~~~~~~~~~~~~v~v~D~~--t~~~~~~~~-~~~~~~~~a~spDG~~-------~ly~s~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 280 ILTVEHSRSCLAAAENTSSVTAS--VGQTSGPIS-NGHDSDAIIAAQDGAS-------DNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEEECSSCTTSCEEEEEEEESS--SCCEEECCE-EEEEECEEEECCSSSC-------EEEEEETTTTEEEEEESS
T ss_pred EEecCCCceeecCCceEEEEECC--CCcEeEEec-CCCceeEEEECCCCCE-------EEEEEeCCCCeEEEEECC
Confidence 22211 1357888853 345566654 4457888999887542 356788899999999985
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.10 E-value=6.8e-10 Score=98.50 Aligned_cols=201 Identities=11% Similarity=0.056 Sum_probs=116.9
Q ss_pred CceeEEEEecCCCEEEEE-ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeE-----------
Q 044557 143 DAVSALALTKDETLLYSV-SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKI----------- 208 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i----------- 208 (362)
........+|||++|++. ..+++|.++|+.++++.+.+..++...+..++|+|+|+ ++++..+..+
T Consensus 72 P~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~ 151 (441)
T d1qnia2 72 PHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL 151 (441)
T ss_dssp CEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred CCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence 344555568999988665 47789999999999987766666778899999999986 4544433333
Q ss_pred -------EEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc----------------------------
Q 044557 209 -------KVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS---------------------------- 253 (362)
Q Consensus 209 -------~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~---------------------------- 253 (362)
..+|..+.....++ . -......+.++|||+++++++.+..
T Consensus 152 ~~~~~~~~~iD~~t~~v~~qI----~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~ 226 (441)
T d1qnia2 152 DNSYTMFTAIDAETMDVAWQV----I-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV 226 (441)
T ss_dssp GGEEEEEEEEETTTCSEEEEE----E-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred ccccceEEeecCccceeeEEE----e-cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence 33555543322111 1 1234677899999999988875531
Q ss_pred -------------EEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 254 -------------IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 254 -------------i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
+.+++.... . .+..++.. +....+.++++ +++++..|++|.+||... . .+.+.++
T Consensus 227 ~dGk~~~v~~~~v~vvd~~~~~-~---v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k--~--~~~~~~~ 297 (441)
T d1qnia2 227 KAGNFKTIGDSKVPVVDGRGES-E---FTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK--L--DDLFEDK 297 (441)
T ss_dssp HTTCCBCCTTCCCCEEECSSSC-S---SEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGG--H--HHHTTTS
T ss_pred cCCCEEEeCCCCcEEEEcccCC-c---eEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeeh--h--hhHhhcc
Confidence 122221111 1 11122222 12345666655 568899999999999531 1 1112222
Q ss_pred CCcEEEEEeeecCC----ccCCCCCceEEEecCCCCcEEEEecc
Q 044557 318 RGPVKCLAAAIDND----RCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 318 ~~~v~~~~~~~~~~----~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.....++...++.. +....+.++.+.|.+.|+.|..|++.
T Consensus 298 ~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 298 IELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp SCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred CCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence 22111111111110 01112345678899999999999974
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.92 E-value=4e-08 Score=85.91 Aligned_cols=259 Identities=12% Similarity=0.043 Sum_probs=130.3
Q ss_pred ceeeecccCccceeeeEecCcEEEEe----------cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc
Q 044557 10 HCLTTLKGHNSYVSSLALAGKFLYTG----------SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD 79 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~~~~l~t~----------s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (362)
+++.++.++......++.+|++|+.. +.|++|++||..+............... ..+ .....+.+++|
T Consensus 57 ~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~-~~g-~~p~~~a~SpD 134 (368)
T d1mdah_ 57 VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-SVG-PRVHIIGNCAS 134 (368)
T ss_dssp EEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC-CBS-CCTTSEEECTT
T ss_pred cEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcccee-ccc-CCccceEECCC
Confidence 45556666665544444467766653 4588999999876432111111000000 000 11123556554
Q ss_pred --eeEEEe-cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCE
Q 044557 80 --KLFSAH-QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL 156 (362)
Q Consensus 80 --~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 156 (362)
.++.+. .++.+.+||+...+.. .....+.. ....+.+ ...
T Consensus 135 Gk~l~va~~~~~~v~~~d~~~~~~~-----~~~~~~~~----------------------~~~~~~~----------~~~ 177 (368)
T d1mdah_ 135 SACLLFFLFGSSAAAGLSVPGASDD-----QLTKSASC----------------------FHIHPGA----------AAT 177 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEEE-----EEEECSSC----------------------CCCEEEE----------TTE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEe-----EEeeccCc----------------------ceEccCC----------Cce
Confidence 466665 5799999998764321 11111100 0001111 233
Q ss_pred EEEEECCCcEEEEECCCceEEEe-----eeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee--------
Q 044557 157 LYSVSWDRTIKIWRTSDFKCLES-----ITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV-------- 223 (362)
Q Consensus 157 l~s~s~d~~i~iwd~~~~~~~~~-----~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~-------- 223 (362)
++..+.||.+.+|+......... ....+...+..+.+.+++..+. ..++.+.+++...........
T Consensus 178 ~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 256 (368)
T d1mdah_ 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGR 256 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred EEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeeccccccee
Confidence 44445555555555443221110 1112333344556666665332 233445555554332111000
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCC---------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC----eEE
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACD---------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD----LVC 290 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~ 290 (362)
............++++|++..++....+ ..|.+||..+.+ .+..+. +...+..++++++ +++
T Consensus 257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~----~~~~~~-~~~~~~~~a~spDG~~~ly~ 331 (368)
T d1mdah_ 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ----TSGPIS-NGHDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC----EEECCE-EEEEECEEEECCSSSCEEEE
T ss_pred eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc----EeEEec-CCCceeEEEECCCCCEEEEE
Confidence 0000112234568889999887765332 358899987653 233333 3456778888754 467
Q ss_pred EeeCCCcEEEeeCCCCceeeeeEec
Q 044557 291 SGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 291 s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
+++.|+.|++||.. +++.++++.
T Consensus 332 s~~~~~~v~v~D~~--tgk~~~~i~ 354 (368)
T d1mdah_ 332 NSAGTEVLDIYDAA--SDQDQSSVE 354 (368)
T ss_dssp EETTTTEEEEEESS--SCEEEEECC
T ss_pred EeCCCCeEEEEECC--CCCEEEEEE
Confidence 88899999999953 456677665
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.88 E-value=5.3e-08 Score=86.18 Aligned_cols=190 Identities=14% Similarity=0.077 Sum_probs=105.1
Q ss_pred CceeEEEEecCCC--EEEEEECCC-----------------cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEE
Q 044557 143 DAVSALALTKDET--LLYSVSWDR-----------------TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTG 202 (362)
Q Consensus 143 ~~v~~~~~~~~~~--~l~s~s~d~-----------------~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~ 202 (362)
..+..++|+|+++ +++..+++. .+..+|..+.+....+.. ......+.++|+|+ +++.
T Consensus 116 ~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v--~~~p~~v~~spdGk~a~vt 193 (441)
T d1qnia2 116 QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV--DGNLDNTDADYTGKYATST 193 (441)
T ss_dssp CCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE--SSCCCCEEECSSSSEEEEE
T ss_pred CCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEec--CCCccceEECCCCCEEEEE
Confidence 3466788999888 455444432 234577777766655532 23467788999987 4444
Q ss_pred eCC-----------------------------------------CeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 203 SAD-----------------------------------------KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 203 ~~d-----------------------------------------g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
+.+ +.+.+++..... ....+..... ...+.++||
T Consensus 194 ~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~----v~~~IPvgks-PhGv~vSPD 268 (441)
T d1qnia2 194 CYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE----FTRYIPVPKN-PHGLNTSPD 268 (441)
T ss_dssp ESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS----SEEEECCBSS-CCCEEECTT
T ss_pred ecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc----eEEEEeCCCC-ccCceECCC
Confidence 332 222232222111 1112222222 456899999
Q ss_pred CCEEE-EEcCCCcEEEEeccCCCC--------cEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC------
Q 044557 242 GSVLY-SGACDRSIIVWEKEEDDG--------NILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI------ 304 (362)
Q Consensus 242 ~~~l~-s~~~d~~i~~wd~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~------ 304 (362)
|++++ ++..|++|.+||+++-.. ...+... ....-..+..+|+++ .+.|...|..|..|++.
T Consensus 269 Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~-~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~ 347 (441)
T d1qnia2 269 GKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE-PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHY 347 (441)
T ss_dssp SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC-CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHH
T ss_pred CCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee-cccccCcccceecCCceEEEcccccceEEEeccchhhhhh
Confidence 99875 567899999999754110 0001111 011112344567654 67788899999999842
Q ss_pred --CCceeeeeEe-----cCCCCcEEEEEeeecCCccCCCCCceEEEec---CCCC
Q 044557 305 --DRNYTCLAVL-----EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG---SLDC 349 (362)
Q Consensus 305 --~~~~~~~~~l-----~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~---s~D~ 349 (362)
......+..+ -||...+++..++ ++|++|+|+ |.|.
T Consensus 348 ~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~---------pdGk~l~s~~k~s~dr 393 (441)
T d1qnia2 348 NGDRVNYIRQKLDVQYQPGHNHASLTESRD---------ADGKWLVVLSKFSKDR 393 (441)
T ss_dssp TTCCCCCEEEEEECSSCEEEEEETTTTSTT---------CCCCEEEEEESCCGGG
T ss_pred ccCCCceeEeccccccCCCCCccccccccC---------CCCcEEEecCcccccc
Confidence 1111223333 4666666554444 445678888 5553
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.77 E-value=2e-08 Score=90.89 Aligned_cols=115 Identities=12% Similarity=0.020 Sum_probs=82.3
Q ss_pred ecCceeEEEEecCCCEEEEEEC---------CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEE
Q 044557 141 HVDAVSALALTKDETLLYSVSW---------DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVW 211 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~---------d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw 211 (362)
|...|.++.|+||+++|+.++. ++.+.+||+.+++... +. .+...+..+.|+|+|+.++-..++.+.+|
T Consensus 60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~-l~-~~~~~~~~~~~SPDG~~ia~~~~~~l~~~ 137 (470)
T d2bgra1 60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EE-RIPNNTQWVTWSPVGHKLAYVWNNDIYVK 137 (470)
T ss_dssp SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SS-CCCTTEEEEEECSSTTCEEEEETTEEEEE
T ss_pred ccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc-cc-cCCccccccccccCcceeeEeecccceEE
Confidence 5567889999999999998754 4678899999987543 43 57778999999999985555678899999
Q ss_pred eCCCCCCcceeehh--------------hhccccceeEEEEecCCCEEEEEcCCCc-EEEE
Q 044557 212 RRSPGNKKHSLVDV--------------LERHNSGINALALSCDGSVLYSGACDRS-IIVW 257 (362)
Q Consensus 212 ~~~~~~~~~~~~~~--------------~~~h~~~v~~i~~s~~~~~l~s~~~d~~-i~~w 257 (362)
+..++......... ..........+.|||||++|+....|.+ +..|
T Consensus 138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~ 198 (470)
T d2bgra1 138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI 198 (470)
T ss_dssp SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence 98876533211100 0112334567889999999999876644 4444
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.69 E-value=2.2e-06 Score=72.43 Aligned_cols=201 Identities=11% Similarity=0.057 Sum_probs=121.6
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcE-EEEeCCCeEEEEeCCCCCCccee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDV-YTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.+..+++.|||+++++...+++|..|+....... +. .....+.+++|.++|.+ ++...++.+..++..........
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~--~~-~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI--HA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE--EE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEE--EE-cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee
Confidence 4678999999999999999999999886644322 22 34567899999999985 45567777888776554332222
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEee------cCccceeEEEEEeCC-eEEEeeCC
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGAL------RGHTKSILCMAVVSD-LVCSGSAD 295 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~-~~~s~s~D 295 (362)
.... ......+.+++.++|.++++.+.++.+..++.............. .........+.+.++ ++++.+..
T Consensus 106 ~~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~ 184 (302)
T d2p4oa1 106 LLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEK 184 (302)
T ss_dssp EEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTT
T ss_pred cccc-CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCC
Confidence 2111 123457889999999999998989988888876532221111100 011122345666666 56677778
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+.|..++.....................+++.+++ .+.++...++.|..++..
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG---------~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG---------NLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC---------CEEEECBTTCCEEEECTT
T ss_pred CeEEeccccccccccccccccCCCCCcceEECCCC---------CEEEEEcCCCcEEEECCC
Confidence 88877765332211111111122234456665443 455566667777777653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.66 E-value=5.9e-08 Score=87.77 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=82.4
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCceEEEeee----ccCcccEEEEEEcCCCc-EEEEe---------CCCeEEEEe
Q 044557 147 ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT----NAHDDAINAVALSDDGD-VYTGS---------ADKKIKVWR 212 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----~~h~~~v~~v~~~~~~~-~~s~~---------~dg~i~iw~ 212 (362)
.+.|.+++.+++. .|+.|.+||+.+++....+. ..|...|.++.|+|||+ ++.++ .++.+.+||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 4568888887764 58899999999987654332 23456799999999998 55443 357889999
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
+.++.. ..+..+...+..+.|||||+.|+.. .++.+.+|+...+.
T Consensus 99 ~~~~~~-----~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~ 143 (470)
T d2bgra1 99 LNKRQL-----ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (470)
T ss_dssp TTTTEE-----CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred CCCCcc-----cccccCCccccccccccCcceeeEe-ecccceEEECCCCc
Confidence 987642 2345678889999999999999985 57789999987543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.59 E-value=0.00015 Score=62.58 Aligned_cols=168 Identities=10% Similarity=0.081 Sum_probs=92.3
Q ss_pred ccEEEEEEcCCCc-EEEEe-CCCeEEEEeCCCCCCcceeeh-hhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccC
Q 044557 186 DAINAVALSDDGD-VYTGS-ADKKIKVWRRSPGNKKHSLVD-VLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEE 261 (362)
Q Consensus 186 ~~v~~v~~~~~~~-~~s~~-~dg~i~iw~~~~~~~~~~~~~-~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~ 261 (362)
..+.++.|+|+|+ +++++ ....|.+|+............ ...........++|+|+++++++.. .+++|.+|+...
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence 3478999999998 55543 345788887654322111110 1112345678899999999886555 688999999875
Q ss_pred CCCcEE-EEEeec--------------CccceeEEEEEeCC--eEE-EeeCCCc-----EEEeeCCCCce-e---eeeEe
Q 044557 262 DDGNIL-VVGALR--------------GHTKSILCMAVVSD--LVC-SGSADKT-----IRIWRGIDRNY-T---CLAVL 314 (362)
Q Consensus 262 ~~~~~~-~~~~~~--------------~h~~~v~~~~~~~~--~~~-s~s~D~~-----i~~W~~~~~~~-~---~~~~l 314 (362)
...... ...... .+......+.++++ ++. +...+.. |-.|+...... . .+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 304 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence 433221 111111 11223345666654 444 3333333 66666432111 1 11111
Q ss_pred cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 315 EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 315 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
........+++++|. ++.+++++...+++|.+|+++..+
T Consensus 305 ~~~G~~p~~i~~~p~-------~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 305 PTSGGHSNAVSPCPW-------SDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp SSCCTTCCCEEECTT-------CTTEEEEECSSSCEEEEEEEETTE
T ss_pred EcCCCCccEEEecCC-------CCCEEEEEeCCCCeEEEEEEeCCc
Confidence 122234455666542 223567777889999999986543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.57 E-value=7.8e-05 Score=62.54 Aligned_cols=233 Identities=12% Similarity=0.105 Sum_probs=139.4
Q ss_pred ceeccceeeecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-e-
Q 044557 5 SVVDHHCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-K- 80 (362)
Q Consensus 5 ~~~~~~~~~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~- 80 (362)
+..+.|.+.++.... .+..+++ +|++++|...+++|..|+.... .. .+....+....+.+.++ .
T Consensus 14 ~~~~~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---~~--------~~~~~~~~~~gla~~~dG~l 81 (302)
T d2p4oa1 14 ELAPAKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQ--------IHATVEGKVSGLAFTSNGDL 81 (302)
T ss_dssp CCCCEEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCC---EE--------EEEECSSEEEEEEECTTSCE
T ss_pred cCCcccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC---EE--------EEEcCCCCcceEEEcCCCCe
Confidence 455556666664322 4677777 5889999999999988884431 11 11112345566666654 2
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
+++...++.+..|+........ ..+... ........+++.++++++++-
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~---~~~~~~----------------------------~~~~~~n~i~~~~~g~~~v~~ 130 (302)
T d2p4oa1 82 VATGWNADSIPVVSLVKSDGTV---ETLLTL----------------------------PDAIFLNGITPLSDTQYLTAD 130 (302)
T ss_dssp EEEEECTTSCEEEEEECTTSCE---EEEEEC----------------------------TTCSCEEEEEESSSSEEEEEE
T ss_pred EEEecCCceEEEEEecccccce---eecccc----------------------------CCccccceeEEccCCCEEeec
Confidence 4445566777777654332111 011100 012345778899999999988
Q ss_pred ECCCcEEEEECCCceEEEeeec---------cCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcccc
Q 044557 161 SWDRTIKIWRTSDFKCLESITN---------AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS 231 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~---------~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~ 231 (362)
+.++.+..++............ ........+.+..+..+++.+..+.|..++.......... ... ....
T Consensus 131 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~-~~~-~~~~ 208 (302)
T d2p4oa1 131 SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP-EIF-VEQT 208 (302)
T ss_dssp TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCC-EEE-EESC
T ss_pred cccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccccccccccc-ccc-cCCC
Confidence 8889998888887653222111 1122356666665444667788899999887654322111 111 1223
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 285 (362)
....+++.++|.++++...++.|..++.. +....+...........+++|.
T Consensus 209 ~pdgia~d~dG~l~va~~~~~~V~~i~p~---G~~~~~~~~~~~~~~pt~vafg 259 (302)
T d2p4oa1 209 NIDDFAFDVEGNLYGATHIYNSVVRIAPD---RSTTIIAQAEQGVIGSTAVAFG 259 (302)
T ss_dssp CCSSEEEBTTCCEEEECBTTCCEEEECTT---CCEEEEECGGGTCTTEEEEEEC
T ss_pred CCcceEECCCCCEEEEEcCCCcEEEECCC---CCEEEEEecCCCCCCceEEEEc
Confidence 45679999999988888889999998754 2233333333334456788884
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.43 E-value=2.8e-05 Score=67.35 Aligned_cols=164 Identities=13% Similarity=0.146 Sum_probs=98.0
Q ss_pred ceeEEEEecCCCEEEEEEC-CCcEEEEECCCc-eE--EEeee-ccCcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCC
Q 044557 144 AVSALALTKDETLLYSVSW-DRTIKIWRTSDF-KC--LESIT-NAHDDAINAVALSDDGD-V-YTGSADKKIKVWRRSPG 216 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~-d~~i~iwd~~~~-~~--~~~~~-~~h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~ 216 (362)
.+.++.|+||+++++++.. ...|.+|+.... .. ..... .........++|+|+++ + ++.-.+++|.+|+.+..
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 3568999999998888764 457888876432 22 12221 12345678999999997 3 45557889999998765
Q ss_pred CCcceee---------------hhhhccccceeEEEEecCCCEEEEEcC-CC-----cEEEEeccCCCCcEEE--EEeec
Q 044557 217 NKKHSLV---------------DVLERHNSGINALALSCDGSVLYSGAC-DR-----SIIVWEKEEDDGNILV--VGALR 273 (362)
Q Consensus 217 ~~~~~~~---------------~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~-----~i~~wd~~~~~~~~~~--~~~~~ 273 (362)
....... .....+......+.++|||++|+++.. +. .|..|+.......... +....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 305 (365)
T d1jofa_ 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP 305 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence 4221100 001112234567899999999988742 22 3777776543221111 11111
Q ss_pred CccceeEEEEEeC---C-eEEEeeCCCcEEEeeCCCCc
Q 044557 274 GHTKSILCMAVVS---D-LVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 274 ~h~~~v~~~~~~~---~-~~~s~s~D~~i~~W~~~~~~ 307 (362)
........+++++ . ++++...++.|.+|+...+.
T Consensus 306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 2223445677753 4 45667788999999864443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.41 E-value=0.00013 Score=60.40 Aligned_cols=176 Identities=13% Similarity=0.176 Sum_probs=104.5
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
.++.|..++.. ++....+..........+++.++|.++ +....+.+.+++.. +....+. ....+......+++.+
T Consensus 91 ~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~--g~~~~~~~~~~i~~d~ 166 (279)
T d1q7fa_ 91 PTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKF--GCSKHLEFPNGVVVND 166 (279)
T ss_dssp GGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE--ECTTTCSSEEEEEECS
T ss_pred Ccccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecc--cccccccccceeeecc
Confidence 34456565543 344444433444556778888888744 44455667777653 2211111 1123455677889999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEee-CCCcEEEeeCCCCceeeeeEec--
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGS-ADKTIRIWRGIDRNYTCLAVLE-- 315 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s-~D~~i~~W~~~~~~~~~~~~l~-- 315 (362)
++..+++....+.|.+|+... + ....+ ...+.......+++++ +++++-+ .++.|.+++. .++.+.++.
T Consensus 167 ~g~i~v~d~~~~~V~~~d~~G-~-~~~~~-g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~---~G~~~~~~~~~ 240 (279)
T d1q7fa_ 167 KQEIFISDNRAHCVKVFNYEG-Q-YLRQI-GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ---DGQLISALESK 240 (279)
T ss_dssp SSEEEEEEGGGTEEEEEETTC-C-EEEEE-SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT---TSCEEEEEEES
T ss_pred ceeEEeeeccccceeeeecCC-c-eeeee-cccccccCCcccccccCCeEEEEECCCCcEEEEECC---CCCEEEEEeCC
Confidence 999888888899999998653 1 11111 1234455567778764 4555544 4556999973 233444443
Q ss_pred CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 316 GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 316 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
......+.+++.+++ .+++ ++.+..|++|+..
T Consensus 241 ~~~~~p~~vav~~dG---------~l~V-~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 241 VKHAQCFDVALMDDG---------SVVL-ASKDYRLYIYRYV 272 (279)
T ss_dssp SCCSCEEEEEEETTT---------EEEE-EETTTEEEEEECS
T ss_pred CCCCCEeEEEEeCCC---------cEEE-EeCCCeEEEEEee
Confidence 223457788886553 4444 4578999999874
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.37 E-value=0.00039 Score=57.34 Aligned_cols=154 Identities=13% Similarity=0.203 Sum_probs=100.1
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEee-eccCcccEEEEEEcCCCcE-EEEeCCCeEEEEeCCCCCCcc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI-TNAHDDAINAVALSDDGDV-YTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~-~s~~~dg~i~iw~~~~~~~~~ 220 (362)
.....+++.+++.++++....+.+.+++.. ++.+..+ ...+......+++.+++.+ ++....+.|.+|+.. ++...
T Consensus 114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~ 191 (279)
T d1q7fa_ 114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLR 191 (279)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEE
T ss_pred cccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceee
Confidence 345678889999988887777888888865 4444443 2235566788999998874 566678899999875 33222
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i 298 (362)
++. ..+.......|++.++|+.+++-.. ++.|.+|+.. ++....-...........+++.++ .++.++.++.|
T Consensus 192 ~~g--~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~---G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v 266 (279)
T d1q7fa_ 192 QIG--GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD---GQLISALESKVKHAQCFDVALMDDGSVVLASKDYRL 266 (279)
T ss_dssp EES--CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT---SCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEE
T ss_pred eec--ccccccCCcccccccCCeEEEEECCCCcEEEEECCC---CCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeE
Confidence 211 1223344678999999997776554 4468899753 332211111222334677777765 56666789999
Q ss_pred EEeeC
Q 044557 299 RIWRG 303 (362)
Q Consensus 299 ~~W~~ 303 (362)
++|+.
T Consensus 267 ~~fr~ 271 (279)
T d1q7fa_ 267 YIYRY 271 (279)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99984
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.33 E-value=0.00027 Score=59.48 Aligned_cols=198 Identities=10% Similarity=0.057 Sum_probs=118.1
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcc----cEEEEEEcCCCcEEEEeC----------------
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD----AINAVALSDDGDVYTGSA---------------- 204 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~----~v~~v~~~~~~~~~s~~~---------------- 204 (362)
...++|.++++.++++...+.|...+........ +...... ..+.+++.++|.++.+..
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~-~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEI-AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEEC-CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEE-EeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence 4678999999988888877888888877654221 1111111 257789999998654432
Q ss_pred CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC-----EEEEEcCCCcEEEEeccCCCCcEE---EEEeecC-c
Q 044557 205 DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS-----VLYSGACDRSIIVWEKEEDDGNIL---VVGALRG-H 275 (362)
Q Consensus 205 dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-----~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~~~-h 275 (362)
+|.|..++.+ +. ...+. ..-...+.++|+|++. .+++-+..+.|..|++... .... ....+.+ +
T Consensus 152 ~G~v~~~~~d-g~-~~~~~----~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~-g~~~~~~~~~~~~~~~ 224 (314)
T d1pjxa_ 152 FGSIYCFTTD-GQ-MIQVD----TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP-AKIENKKVWGHIPGTH 224 (314)
T ss_dssp CEEEEEECTT-SC-EEEEE----EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET-TEEEEEEEEEECCCCS
T ss_pred CceEEEEeec-Cc-eeEee----CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCc-cccceeeEEEEccccc
Confidence 2233333322 11 11111 1122345789998764 4455577888999987643 2221 1122222 1
Q ss_pred cceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 276 TKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 276 ~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
......+++. +++.++....+.|.+|+-. .......+........+++|.++++ .+.++.+..+.|..
T Consensus 225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~--~g~~~~~i~~p~~~~t~~afg~d~~--------~lyVt~~~~g~i~~ 294 (314)
T d1pjxa_ 225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPD--GGQPKMRIRCPFEKPSNLHFKPQTK--------TIFVTEHENNAVWK 294 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEETTTEEEEECTT--CBSCSEEEECSSSCEEEEEECTTSS--------EEEEEETTTTEEEE
T ss_pred cccceeeEEecCCcEEEEEcCCCEEEEEeCC--CCEEEEEEECCCCCEEEEEEeCCCC--------EEEEEECCCCcEEE
Confidence 2234456665 4466777777889999742 2333445555566788999976542 36677788898888
Q ss_pred EecccCc
Q 044557 354 WQISFPL 360 (362)
Q Consensus 354 W~~~~~~ 360 (362)
.++..|=
T Consensus 295 ~~~~~~G 301 (314)
T d1pjxa_ 295 FEWQRNG 301 (314)
T ss_dssp EECSSCB
T ss_pred EECCCCC
Confidence 8876653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.03 E-value=0.00055 Score=55.75 Aligned_cols=191 Identities=12% Similarity=0.090 Sum_probs=114.2
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEE-eCCCeEEEEeCCCCCCcceee
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTG-SADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~-~~dg~i~iw~~~~~~~~~~~~ 223 (362)
...++++++++++++....+.+++++-.+...+... ........+++.+++.++.+ ..+..+..++...... ...
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~--~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~--~~~ 134 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF--DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TVL 134 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC--CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC--EEC
T ss_pred ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee--eeeeecccccccccceeEeecccccccccccccccee--eee
Confidence 457889999998888777777777765555443322 22345789999999886544 4455677776543321 111
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEe
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIW 301 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W 301 (362)
.. ........+++.|+|..+++...++.|..++..... . .. ...........+++.+ +++++....+.|..+
T Consensus 135 -~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~--~-~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~ 208 (260)
T d1rwia_ 135 -PF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN--Q-VV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL 208 (260)
T ss_dssp -CC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC--E-EE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred -ee-cccCCcceeeecCCCCEeeeccccccccccccccce--e-ee-eeccccCCCccceeeeeeeeeeeecCCCEEEEE
Confidence 11 112345789999999988888888899999876432 1 11 1123344556777764 477777777888777
Q ss_pred eCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 302 RGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 302 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+......... ....-....++++.+++ .++++-..++.|+..+.
T Consensus 209 ~~~~~~~~~~--~~~~~~~P~~i~~d~~g---------~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 209 LAGSTTSTVL--PFTGLNTPLAVAVDSDR---------TVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CTTCSCCEEC--CCCSCCCEEEEEECTTC---------CEEEEEGGGTEEEEECC
T ss_pred eCCCCeEEEE--ccCCCCCeEEEEEeCCC---------CEEEEECCCCEEEEEeC
Confidence 6332211111 11223456788886442 45555555666665443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.97 E-value=0.0034 Score=52.62 Aligned_cols=197 Identities=10% Similarity=0.087 Sum_probs=109.3
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeC-----CCeEEEEeCCCCCC
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSA-----DKKIKVWRRSPGNK 218 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~-----dg~i~iw~~~~~~~ 218 (362)
.+..++|.++|++.++-..+++|..|+....+....+. ........+++.++|.++.+.. .+.|...+......
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 34688999999988777788999999987765544443 3445678999999999665542 23344444433221
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCC------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eE
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACD------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LV 289 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~ 289 (362)
....... .-....+.+++.++|.+.++.... +.+..++... .....+ .........++++++ ++
T Consensus 120 -~~~~~~~-~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~~---~~~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 120 -QDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPI---IQNISVANGIALSTDEKVLW 192 (319)
T ss_dssp -EEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS--CCEEEE---EEEESSEEEEEECTTSSEEE
T ss_pred -eeeccCC-CcccCCcceeEEeccceeecccccccccCcceeEEEeccc--ceeEEE---eeccceeeeeeeccccceEE
Confidence 1111111 112346789999999876664321 2244443322 121111 111223356778754 56
Q ss_pred EEeeCCCcEEEeeCCCCc--eee----eeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 290 CSGSADKTIRIWRGIDRN--YTC----LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 290 ~s~s~D~~i~~W~~~~~~--~~~----~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++-+..+.|..|++.... ... .....+.......+++..+ +++.++....+.|.+++-.
T Consensus 193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~---------G~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD---------DNLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT---------CCEEEEEETTTEEEEECTT
T ss_pred EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCC---------CCEEEEEcCCCEEEEECCC
Confidence 777888889888753211 111 1111111222445666433 3455555567788887753
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=0.003 Score=51.16 Aligned_cols=192 Identities=9% Similarity=0.039 Sum_probs=106.6
Q ss_pred ceeEEEEecCCCEEEEE-ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeC-CCeEEEEeCCCCCCcce
Q 044557 144 AVSALALTKDETLLYSV-SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSA-DKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~-dg~i~iw~~~~~~~~~~ 221 (362)
....++++++|+++++. +..+.+..++............+ ......+++.+++.++.+.. .+.+++++..+.. .
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~---~ 90 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ---T 90 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC---E
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccce---e
Confidence 45789999999976654 45577777765544322211111 22356789999998665544 4455555433221 1
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEE
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIR 299 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~ 299 (362)
.. .. ........+++.++|..+++-.....+..++...... . .....+ ......+++.+ +++++...++.|.
T Consensus 91 ~~-~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~--~-~~~~~~-~~~p~~i~~~~~g~~~v~~~~~~~i~ 164 (260)
T d1rwia_ 91 VL-PF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--T-VLPFTG-LNDPDGVAVDNSGNVYVTDTDNNRVV 164 (260)
T ss_dssp EC-CC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC--E-ECCCCS-CCSCCEEEECTTCCEEEEEGGGTEEE
T ss_pred ee-ee-eeeeecccccccccceeEeecccccccccccccccee--e-eeeecc-cCCcceeeecCCCCEeeecccccccc
Confidence 11 11 1224567899999999888777777777777643221 1 111111 22345666654 4667777778888
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.++.... .. .......-.....+++.+++ .++++-...+.|..++.
T Consensus 165 ~~d~~~~-~~-~~~~~~~~~~p~gi~~d~~g---------~l~vsd~~~~~i~~~~~ 210 (260)
T d1rwia_ 165 KLEAESN-NQ-VVLPFTDITAPWGIAVDEAG---------TVYVTEHNTNQVVKLLA 210 (260)
T ss_dssp EECTTTC-CE-EECCCSSCCSEEEEEECTTC---------CEEEEETTTTEEEEECT
T ss_pred ccccccc-ee-eeeeccccCCCccceeeeee---------eeeeeecCCCEEEEEeC
Confidence 8874332 11 11122344556777775442 45556655666666654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=0.009 Score=47.99 Aligned_cols=200 Identities=12% Similarity=0.023 Sum_probs=102.1
Q ss_pred ecCceeEEEEecCCCEEEEEECCC---cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEE-EeCCCeEEEEeCCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDR---TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYT-GSADKKIKVWRRSP 215 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s-~~~dg~i~iw~~~~ 215 (362)
+...+..-+|||||+.||-...+. .+.+.+...+.... +. .+........|+|+|. ++. ...++...++....
T Consensus 37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~ 114 (269)
T d2hqsa1 37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 114 (269)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE-Ee-eeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence 445677889999999988665443 36666666655433 22 3566778889999997 433 33343333332222
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--e-EEE
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--L-VCS 291 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~~s 291 (362)
....... ............+++++..++ +...++...+|.......... .+..+........++++ . +.+
T Consensus 115 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~~~~~~ 188 (269)
T d2hqsa1 115 ASGQIRQ---VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ---RITWEGSQNQDADVSSDGKFMVMV 188 (269)
T ss_dssp TTCCEEE---CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE---ECCCSSSEEEEEEECTTSSEEEEE
T ss_pred cccccee---eeeccccccccccccccccceecccccCCceEeeeecccccce---eeecccccccccccccccceeEEE
Confidence 2111111 111233334456777776554 444555544444332222211 12233444455566654 3 444
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEec--CCCCcEEEEeccc
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG--SLDCDIKVWQISF 358 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~--s~D~~i~~W~~~~ 358 (362)
....+...+|........ . .+..+........|+|+++. ++.+. +....|.+|+++.
T Consensus 189 ~~~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~p~~SPDG~~--------i~f~s~~~~~~~l~~~~~dg 247 (269)
T d2hqsa1 189 SSNGGQQHIAKQDLATGG-V-QVLSSTFLDETPSLAPNGTM--------VIYSSSQGMGSVLNLVSTDG 247 (269)
T ss_dssp EECSSCEEEEEEETTTCC-E-EECCCSSSCEEEEECTTSSE--------EEEEEEETTEEEEEEEETTS
T ss_pred eecCCceeeeEeeccccc-c-eEeecCccccceEECCCCCE--------EEEEEcCCCCcEEEEEECCC
Confidence 455556666643222221 2 22334555667788877653 33333 2234577777753
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.31 E-value=0.033 Score=46.24 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=101.8
Q ss_pred CceeEEEEecCCCEEEEEECC----CcEEEEECCCceEEEeeec-cCcccEEEEEEcCCCcEEEEeCC-------CeEEE
Q 044557 143 DAVSALALTKDETLLYSVSWD----RTIKIWRTSDFKCLESITN-AHDDAINAVALSDDGDVYTGSAD-------KKIKV 210 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~s~~~d-------g~i~i 210 (362)
.....++++++|+++++...+ +.+...+............ .-......+++.++|.++.+..+ +.+..
T Consensus 82 ~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~ 161 (319)
T d2dg1a1 82 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY 161 (319)
T ss_dssp SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred CCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEE
Confidence 346789999999988775433 2344444444433222211 11234678999999997665433 23444
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEe----ecCccceeEEEEEe
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGA----LRGHTKSILCMAVV 285 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~----~~~h~~~v~~~~~~ 285 (362)
++.+.. ....+.. .-...+.|+|+||++.|+ +-+..+.|..|++............ ..........++++
T Consensus 162 ~~~dg~-~~~~~~~----~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD 236 (319)
T d2dg1a1 162 VSPDFR-TVTPIIQ----NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 236 (319)
T ss_dssp ECTTSC-CEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred Eecccc-eeEEEee----ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEc
Confidence 443321 1111111 122346799999998765 5566789999988653322211111 11111223456665
Q ss_pred --CCeEEEeeCCCcEEEeeCCCCceeeeeEec------CCCCcEEEEEeeecC
Q 044557 286 --SDLVCSGSADKTIRIWRGIDRNYTCLAVLE------GHRGPVKCLAAAIDN 330 (362)
Q Consensus 286 --~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~------~h~~~v~~~~~~~~~ 330 (362)
+++.++....+.|.+++-. ++.+..+. ++...+.+++|.++.
T Consensus 237 ~~G~l~Va~~~~g~V~~~~p~---G~~l~~i~~P~~~~~~~~~~~~~~~~~~~ 286 (319)
T d2dg1a1 237 SDDNLYVAMYGQGRVLVFNKR---GYPIGQILIPGRDEGHMLRSTHPQFIPGT 286 (319)
T ss_dssp TTCCEEEEEETTTEEEEECTT---SCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CCCCEEEEEcCCCEEEEECCC---CcEEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence 4477788888999999842 33444432 556678899886543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.21 E-value=0.042 Score=45.49 Aligned_cols=152 Identities=11% Similarity=0.104 Sum_probs=89.4
Q ss_pred eeEEEEecCCCEEEEEEC---------------CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-----cEE-EEe
Q 044557 145 VSALALTKDETLLYSVSW---------------DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-----DVY-TGS 203 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~---------------d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-----~~~-s~~ 203 (362)
...+++.++|++.++-.. ++.|..++.. ++..... ......+.++|+|++ .++ +-+
T Consensus 119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~--~~~~~pNGi~~~~d~d~~~~~lyv~d~ 195 (314)
T d1pjxa_ 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAET 195 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE--EEESSEEEEEEEECTTSCEEEEEEEET
T ss_pred CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee--CCcceeeeeEECCCCCcceeEEEEEee
Confidence 466788899887776421 1234333332 2222211 122345778898765 244 456
Q ss_pred CCCeEEEEeCCCCCCcce--eehhhh-ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeE
Q 044557 204 ADKKIKVWRRSPGNKKHS--LVDVLE-RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSIL 280 (362)
Q Consensus 204 ~dg~i~iw~~~~~~~~~~--~~~~~~-~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~ 280 (362)
..+.|..|++........ ....+. ........+++.++|+..++....+.|..||.+..... ..+........
T Consensus 196 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~----~~i~~p~~~~t 271 (314)
T d1pjxa_ 196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK----MRIRCPFEKPS 271 (314)
T ss_dssp TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS----EEEECSSSCEE
T ss_pred cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEE----EEEECCCCCEE
Confidence 778898888754321111 111111 12223457899999998887777889999987643321 12223345678
Q ss_pred EEEEeCC---eEEEeeCCCcEEEeeC
Q 044557 281 CMAVVSD---LVCSGSADKTIRIWRG 303 (362)
Q Consensus 281 ~~~~~~~---~~~s~s~D~~i~~W~~ 303 (362)
+++|.++ +++|.+.++.|...+.
T Consensus 272 ~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 272 NLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEC
Confidence 8999764 6788888888877764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.02 E-value=0.062 Score=43.96 Aligned_cols=175 Identities=15% Similarity=0.080 Sum_probs=102.7
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccC---cccEEEEEEcCCCcEEEEeC-----CCeEEEEeCC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH---DDAINAVALSDDGDVYTGSA-----DKKIKVWRRS 214 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~s~~~-----dg~i~iw~~~ 214 (362)
..+.++++.++++++++ +. ..|.++|..+++......... ...++.+.+.|+|.+..++. .+.-.+|.+.
T Consensus 59 ~~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~ 136 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 136 (295)
T ss_dssp SCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CCcEEEEEecCCCEEEE-Ee-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec
Confidence 45678888889887765 44 468899998876433221111 12478889999998765542 2234455554
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCC----cEEEEEeecCccceeEEEEEeC--C
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDG----NILVVGALRGHTKSILCMAVVS--D 287 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~----~~~~~~~~~~h~~~v~~~~~~~--~ 287 (362)
.+.. ..+ .. .-..-+.++|+++++.++ +-+..+.|..|++..... .........+.......++++. +
T Consensus 137 ~g~~-~~~---~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn 211 (295)
T d2ghsa1 137 KGKV-TKL---FA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH 211 (295)
T ss_dssp TTEE-EEE---EE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred CCcE-EEE---ee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC
Confidence 4321 111 11 122346789999998665 556677888888643211 1122223334445566777754 3
Q ss_pred eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 288 LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
+.++.-..+.|..|+- .++.+..+.-=...+++++|-
T Consensus 212 lWva~~~~g~V~~~dp---~G~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 212 IWNARWGEGAVDRYDT---DGNHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp EEEEEETTTEEEEECT---TCCEEEEEECSCSBEEEEEEE
T ss_pred EEeeeeCCCceEEecC---CCcEeeEecCCCCceEEEEEe
Confidence 5555556678888873 234455554223468999995
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.075 Score=42.20 Aligned_cols=174 Identities=14% Similarity=0.086 Sum_probs=90.2
Q ss_pred ecCceeEEEEecCCCEEEEEECC-CcEEEE--ECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCe--EEEEeC
Q 044557 141 HVDAVSALALTKDETLLYSVSWD-RTIKIW--RTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKK--IKVWRR 213 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d-~~i~iw--d~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~--i~iw~~ 213 (362)
+.+......++|+++.++..... +...++ ........... ..........+++++. +++...+|. |.+.+.
T Consensus 81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~ 158 (269)
T d2hqsa1 81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 158 (269)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred eecccccceecCCCCeeeEeeecCCccceeecccccccceeee--eccccccccccccccccceecccccCCceEeeeec
Confidence 45566788899999988776543 333332 22222222221 2233344455666664 445555554 444555
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC-cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEE
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR-SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVC 290 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~ 290 (362)
...... ....+........|+|+++.++..+.++ ...+|........... ..+........|+++ .|+
T Consensus 159 ~~~~~~-----~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~p~~SPDG~~i~ 229 (269)
T d2hqsa1 159 NGGAPQ-----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV----LSSTFLDETPSLAPNGTMVI 229 (269)
T ss_dssp TSSCCE-----ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE----CCCSSSCEEEEECTTSSEEE
T ss_pred ccccce-----eeecccccccccccccccceeEEEeecCCceeeeEeecccccceE----eecCccccceEECCCCCEEE
Confidence 443221 1122345566778999999888766544 4444444333332222 123334455567655 443
Q ss_pred -EeeC--CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeee
Q 044557 291 -SGSA--DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI 328 (362)
Q Consensus 291 -s~s~--D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~ 328 (362)
+... ...+.+++.... ....|......+...+|+|
T Consensus 230 f~s~~~~~~~l~~~~~dg~---~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 230 YSSSQGMGSVLNLVSTDGR---FKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EEEEETTEEEEEEEETTSC---CEEECCCSSSEEEEEEECC
T ss_pred EEEcCCCCcEEEEEECCCC---CEEEEeCCCCcEEeEEeCC
Confidence 3332 334666665432 2334555566676677765
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.73 E-value=0.11 Score=42.40 Aligned_cols=144 Identities=11% Similarity=0.140 Sum_probs=87.6
Q ss_pred ceeEEEEecCCCEEEEEECC----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCC
Q 044557 144 AVSALALTKDETLLYSVSWD----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~ 217 (362)
.+..+.+.|+|++.++...+ +.-.+|.+..++...... .-...+.+++++++. +++-+..+.|..|+++...
T Consensus 104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~--~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~ 181 (295)
T d2ghsa1 104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA--DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART 181 (295)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE--EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred cceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee--ccCCcceeeecCCCceEEEeecccceeeEeeecccc
Confidence 35677889999877665432 344566666665433322 223467899999986 4566778899999875432
Q ss_pred Cc----ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-C---eE
Q 044557 218 KK----HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-D---LV 289 (362)
Q Consensus 218 ~~----~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~---~~ 289 (362)
.. ................+++.++|.+.++.-..+.|..||.. +.. +..+.--...+++++|.+ + ++
T Consensus 182 ~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~---G~~--~~~i~lP~~~~T~~~FGG~d~~~Ly 256 (295)
T d2ghsa1 182 GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD---GNH--IARYEVPGKQTTCPAFIGPDASRLL 256 (295)
T ss_dssp CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT---CCE--EEEEECSCSBEEEEEEESTTSCEEE
T ss_pred cccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC---CcE--eeEecCCCCceEEEEEeCCCCCEEE
Confidence 11 11111122233456788899999877766667889999854 222 222332335689999964 2 56
Q ss_pred EEeeC
Q 044557 290 CSGSA 294 (362)
Q Consensus 290 ~s~s~ 294 (362)
+|.+.
T Consensus 257 vTta~ 261 (295)
T d2ghsa1 257 VTSAR 261 (295)
T ss_dssp EEEBC
T ss_pred EEECC
Confidence 66543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.011 Score=52.12 Aligned_cols=112 Identities=10% Similarity=0.009 Sum_probs=67.2
Q ss_pred eeEEEEecCCCEEEEEE---------CCCcEEEEECCCceEEEeeecc--CcccEEEEEEcCCCcEEEEeCCCeEEEEeC
Q 044557 145 VSALALTKDETLLYSVS---------WDRTIKIWRTSDFKCLESITNA--HDDAINAVALSDDGDVYTGSADKKIKVWRR 213 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s---------~d~~i~iwd~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~ 213 (362)
+....++||+++++... ..+.+.++|+.+++... +... ....+....|||+|+-++-..++.|.+.+.
T Consensus 63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~ 141 (465)
T d1xfda1 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH 141 (465)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred cceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCceEEEEecceEEEEec
Confidence 45667899999877664 34678899998876433 2211 223344578999998444445778888877
Q ss_pred CCCCCcceeehh------hhcc---------ccceeEEEEecCCCEEEEEcCC-CcEEEEe
Q 044557 214 SPGNKKHSLVDV------LERH---------NSGINALALSCDGSVLYSGACD-RSIIVWE 258 (362)
Q Consensus 214 ~~~~~~~~~~~~------~~~h---------~~~v~~i~~s~~~~~l~s~~~d-~~i~~wd 258 (362)
..+...+ +... ..+. ...-.++.|||||++|+....| ..|..+.
T Consensus 142 ~~~~~~~-lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~ 201 (465)
T d1xfda1 142 VGKQAIR-VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME 201 (465)
T ss_dssp SSSCCEE-EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred CCCceEE-EecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceee
Confidence 6544322 2110 0000 0112478899999999987643 3344443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.022 Score=50.19 Aligned_cols=108 Identities=6% Similarity=0.005 Sum_probs=63.0
Q ss_pred EEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE---------cCCCcEEEEeccCC
Q 044557 192 ALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG---------ACDRSIIVWEKEED 262 (362)
Q Consensus 192 ~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~---------~~d~~i~~wd~~~~ 262 (362)
.|.+++.++--..+|.|.+||+.++... .++.........+....||||+++|+.+ +..+.+.+||+.++
T Consensus 23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIYREQKGTVRLWNVETNTST-VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCCCCSSSCEEEBCGGGCCCE-EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEEEeCCCcEEEEECCCCCEE-EEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 4666766555567889999999876532 3333222234467788999999998776 34567888998765
Q ss_pred CCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 263 DGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 263 ~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
.. ..+.........+....|+|+ .+|=.. ++.|.+.+.
T Consensus 102 ~~--~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~ 141 (465)
T d1xfda1 102 DP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAH 141 (465)
T ss_dssp CC--EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESS
T ss_pred ce--eeccCccCCccccceeeeccCCceEEEEe-cceEEEEec
Confidence 42 222222222333434455544 443333 455655553
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.98 E-value=0.19 Score=39.74 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=57.7
Q ss_pred EecC--CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCC---C--eEEEEeCCCCCCcc
Q 044557 150 LTKD--ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSAD---K--KIKVWRRSPGNKKH 220 (362)
Q Consensus 150 ~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~d---g--~i~iw~~~~~~~~~ 220 (362)
.+|| |+.+|=.+ ++.|.+.|+.+++..+ +. .+...+...+|||||+ ++ +...+ . .|.+++..++...
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~- 81 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK- 81 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE-
T ss_pred cCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-Ee-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE-
Confidence 4677 88776554 4678888998877543 43 3556778899999997 44 33222 2 3666666555321
Q ss_pred eeehhh---hccccceeEEEEecCCCEEEEE
Q 044557 221 SLVDVL---ERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 221 ~~~~~~---~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
.+.... ...........|+|||+.|+..
T Consensus 82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 82 RITYFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred EeeecCCCccCccccccccccCCCCCEEEEE
Confidence 111100 0112345678899999988865
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.57 E-value=0.23 Score=42.29 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=63.7
Q ss_pred EEEEe---cCCCEEEEEE-CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc---EEEEeCC--------------
Q 044557 147 ALALT---KDETLLYSVS-WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD---VYTGSAD-------------- 205 (362)
Q Consensus 147 ~~~~~---~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~---~~s~~~d-------------- 205 (362)
.+++. +||++|+... .+.+|.+-|+.+.++.+.+.....+.+..++..++++ ++..+.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 45554 4899877765 6789999999999987755555666777777766543 4444432
Q ss_pred ----CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC
Q 044557 206 ----KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD 251 (362)
Q Consensus 206 ----g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d 251 (362)
+.+...|.++.+...++. -......+.+++||+++++.+.+
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~-----V~g~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVL-----VSGNLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEE-----ESSCCCCEEECSSSSEEEEEESC
T ss_pred hhcceEEEEEecCCceEEEEee-----eCCChhccccCCCCCEEEEEecc
Confidence 224556665543222211 12234568899999999887754
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=92.38 E-value=0.85 Score=37.90 Aligned_cols=111 Identities=17% Similarity=0.197 Sum_probs=65.9
Q ss_pred EEEecCCCEEEEEECCC-----------cEEEEECCCceE--EEeeeccCcccEEEEEEcCCCcEEE-EeCC-CeEEEEe
Q 044557 148 LALTKDETLLYSVSWDR-----------TIKIWRTSDFKC--LESITNAHDDAINAVALSDDGDVYT-GSAD-KKIKVWR 212 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~-----------~i~iwd~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~s-~~~d-g~i~iw~ 212 (362)
.....++++++-|+.+. .+.+||..+.+. .......+.......++.++|+++. |+.+ ..+.+||
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd 104 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 104 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence 34456788888887531 367999987643 2222223333334567788998554 4433 5899999
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC------CcEEEEeccC
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD------RSIIVWEKEE 261 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d------~~i~~wd~~~ 261 (362)
..+..- .....+.... .-...+..+||+.++.|+.+ +.+.+||..+
T Consensus 105 ~~~~~w--~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 105 SSSDSW--IPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp GGGTEE--EECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CccCcc--cccccccccc-cccceeeecCCceeeeccccccccccceeeeecCCC
Confidence 876431 1111111111 12346667899999998854 3588898764
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=91.84 E-value=0.68 Score=36.28 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=35.2
Q ss_pred EcCC--CcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE
Q 044557 193 LSDD--GDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 193 ~~~~--~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
++|+ |+.++-..+|.|.+.|+..+... .+ ..+...+...+|||||+.|+-.
T Consensus 6 ~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~L----t~~~~~~~~p~~SPDG~~iaf~ 58 (281)
T d1k32a2 6 LNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KI----VSNLGVINNARFFPDGRKIAIR 58 (281)
T ss_dssp EEEEEETTEEEEEETTEEEEEETTTCCEE-EE----ECSSSEEEEEEECTTSSEEEEE
T ss_pred cCCCCCCCEEEEEeCCcEEEEECCCCCEE-EE----ecCCCcccCEEECCCCCEEEEE
Confidence 5677 76444445677888898876532 22 3355678889999999998854
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.70 E-value=1.8 Score=35.55 Aligned_cols=152 Identities=8% Similarity=0.080 Sum_probs=81.2
Q ss_pred eEEEEecCCCEEEEEEC------------CCcEEEEECCCceEE-Eeeec-cC-----cccEEEEEE--cCCCc--EEEE
Q 044557 146 SALALTKDETLLYSVSW------------DRTIKIWRTSDFKCL-ESITN-AH-----DDAINAVAL--SDDGD--VYTG 202 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~------------d~~i~iwd~~~~~~~-~~~~~-~h-----~~~v~~v~~--~~~~~--~~s~ 202 (362)
..++..|++..+++++. .|.|.++|+.+.+.. ..+.. .. .-....+.+ .++|. |++.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 45677888877666542 388999998764321 11110 00 011233443 45564 4554
Q ss_pred e---CCCeEEEEeCCCCCCcceeehhhhc-cccceeEEEEecCCCEEEEEc-----------------CCCcEEEEeccC
Q 044557 203 S---ADKKIKVWRRSPGNKKHSLVDVLER-HNSGINALALSCDGSVLYSGA-----------------CDRSIIVWEKEE 261 (362)
Q Consensus 203 ~---~dg~i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~~~~~l~s~~-----------------~d~~i~~wd~~~ 261 (362)
. ...+|.+|++...........+... .....+.+++..+|..++|-. .-+.+..||..
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~- 196 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN- 196 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS-
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC-
Confidence 3 4568888887655432222222221 123468899889998888831 11233334322
Q ss_pred CCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCC
Q 044557 262 DDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 262 ~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~ 304 (362)
. ...... ......-++++++ ++++-+..+.|+.|+..
T Consensus 197 -~-~~~~~~----~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~ 236 (340)
T d1v04a_ 197 -D-VRVVAE----GFDFANGINISPDGKYVYIAELLAHKIHVYEKH 236 (340)
T ss_dssp -C-EEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred -c-eEEEcC----CCCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence 1 111111 1233456777754 56777778889888754
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.81 E-value=3.6 Score=33.81 Aligned_cols=198 Identities=14% Similarity=0.151 Sum_probs=109.1
Q ss_pred cCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEc------CCCc-EEEEe--CC--CeEEEEeCCCCCCcc
Q 044557 152 KDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS------DDGD-VYTGS--AD--KKIKVWRRSPGNKKH 220 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~------~~~~-~~s~~--~d--g~i~iw~~~~~~~~~ 220 (362)
|+..+++....++-|.+||++ ++.+..+. .+.++.|..- .... ++.++ .+ .+|.+|.+.......
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 345677777777789999986 66665543 2344444432 2222 44444 22 367788765322111
Q ss_pred eeehhh----hccccceeEEEE--ecC-CC-EEEEEcCCCcEEEEeccCCC-C--cEEEEEeecCccceeEEEEEeCC--
Q 044557 221 SLVDVL----ERHNSGINALAL--SCD-GS-VLYSGACDRSIIVWEKEEDD-G--NILVVGALRGHTKSILCMAVVSD-- 287 (362)
Q Consensus 221 ~~~~~~----~~h~~~v~~i~~--s~~-~~-~l~s~~~d~~i~~wd~~~~~-~--~~~~~~~~~~h~~~v~~~~~~~~-- 287 (362)
...... ..-...+..+++ +|. |. +++....+|.+..|.+.... . ....+..+.. ...+-.+.++.+
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~ 192 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYG 192 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTT
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCC
Confidence 111000 000123555665 554 44 56778889999888774322 1 1233333432 234566667654
Q ss_pred eEEEeeCCCcEEEeeCCCC---ceeeeeEecC--CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 288 LVCSGSADKTIRIWRGIDR---NYTCLAVLEG--HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~~~---~~~~~~~l~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.|..+-++..|..++.... ....+....+ ...-+..++.-... ...+++|+|.-.|++..|||...|
T Consensus 193 ~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~-----~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 193 SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAA-----DGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECG-----GGCEEEEEEEGGGTEEEEEESSTT
T ss_pred cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcC-----CCCeEEEEEcCCCCeEEEEecCCC
Confidence 7777778766544443211 1222222222 45678888776432 245789999888899999998654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.38 E-value=4.3 Score=32.48 Aligned_cols=127 Identities=12% Similarity=0.163 Sum_probs=81.7
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 147 ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
+.-.+|..+.||--+ ..++.|+|+++.+.+..... ..+|.--.|-.+..|+-. .+..|.-|+++......+ .+
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~--~e~VvfWkWis~~~L~lV-T~taVYHW~~~g~s~P~k---~f 139 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVK---MF 139 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC--SSCCCEEEESSSSEEEEE-CSSEEEEEESSSSCCCEE---EE
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc--CCCcEEEEecCCCEEEEE-cCCceEEEcccCCCCchh---hh
Confidence 444688888887766 56899999999998887753 346666777666654433 355799999864432222 23
Q ss_pred hcc----ccceeEEEEecCCCEEEEEc---CC----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEe
Q 044557 227 ERH----NSGINALALSCDGSVLYSGA---CD----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 227 ~~h----~~~v~~i~~s~~~~~l~s~~---~d----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 285 (362)
.+| ...|.....+++.++++..| .+ |.+.+|+.+.. .-..++||......+.+.
T Consensus 140 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~ 204 (327)
T d1utca2 140 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKME 204 (327)
T ss_dssp ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----EEEEECCSEEEEEEECCT
T ss_pred hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-----cCccccceeeeeEEEEcC
Confidence 333 34677777888888766432 23 45678887642 223467887665555443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.30 E-value=8.8 Score=32.56 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=38.5
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEE--Eeeec-----cCcccEEEEEEcCC
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCL--ESITN-----AHDDAINAVALSDD 196 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~-----~h~~~v~~v~~~~~ 196 (362)
.+...+|+|.||+++|++--..|.|++++..+++.. ..+.. .-......|+++|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 456789999999999887655799999987776432 22211 11245678999885
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=85.23 E-value=8.2 Score=31.38 Aligned_cols=99 Identities=11% Similarity=0.218 Sum_probs=53.4
Q ss_pred eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC-CcEEEEeccCCCCcEEEEEeecCccceeEEEEE-
Q 044557 207 KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD-RSIIVWEKEEDDGNILVVGALRGHTKSILCMAV- 284 (362)
Q Consensus 207 ~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~- 284 (362)
.+.+||..++.-..... ....|.......++.++|+.++.|+.+ ..+.+||..+.. ......+............
T Consensus 53 ~~~~yd~~t~~w~~~~~-~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~ 129 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTV-TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS--WIPGPDMQVARGYQSSATMS 129 (387)
T ss_dssp EEEEECTTTCCBCCCEE-EECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE--EEECCCCSSCCSSCEEEECT
T ss_pred EEEEEECCCCcEeecCC-CCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc--ccccccccccccccceeeec
Confidence 36789988764322111 111222233456788999999998866 579999987532 2222222221111222222
Q ss_pred eCCeEEEeeCC------CcEEEeeCCCCce
Q 044557 285 VSDLVCSGSAD------KTIRIWRGIDRNY 308 (362)
Q Consensus 285 ~~~~~~s~s~D------~~i~~W~~~~~~~ 308 (362)
++.+++.|+.+ ..+.+|+.....+
T Consensus 130 dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 130 DGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp TSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred CCceeeeccccccccccceeeeecCCCCce
Confidence 34566666543 3578888655444
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.19 E-value=4.4 Score=34.22 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=37.9
Q ss_pred CcccEEEEEEcCCCcEE--EEeCC----CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC
Q 044557 184 HDDAINAVALSDDGDVY--TGSAD----KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 184 h~~~v~~v~~~~~~~~~--s~~~d----g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~ 250 (362)
+.-.+..++++|+++++ +.+.+ -.++++|+.+++.... .+. ......++|++|++.|+....
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~---~i~--~~~~~~~~W~~D~~~~~Y~~~ 190 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD---VLE--RVKFSCMAWTHDGKGMFYNAY 190 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE---EEE--EECSCCEEECTTSSEEEEEEC
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc---ccc--cccccceEEcCCCCEEEEEEe
Confidence 33345567789999733 33333 3799999998753211 111 122356889999998875543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=83.13 E-value=10 Score=30.72 Aligned_cols=143 Identities=14% Similarity=0.148 Sum_probs=72.6
Q ss_pred CCeEEEEeCCCCCCcceeehhhh-------ccccceeEEEEecCCC-EEEEEc---CCCcEEEEeccCCCCcEEEEEeec
Q 044557 205 DKKIKVWRRSPGNKKHSLVDVLE-------RHNSGINALALSCDGS-VLYSGA---CDRSIIVWEKEEDDGNILVVGALR 273 (362)
Q Consensus 205 dg~i~iw~~~~~~~~~~~~~~~~-------~h~~~v~~i~~s~~~~-~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~ 273 (362)
.|.|.++|+.+.......+.... -++.++ ++.-.++|. +|++.. ...+|-+|++......+....++.
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi-~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~ 145 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGI-STFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 145 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEE-EEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccce-eEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecC
Confidence 48888898876543221111110 111222 222345665 455543 456788898876555555555544
Q ss_pred Ccc-ceeEEEEEeC--CeEEEee---CC------------CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCC
Q 044557 274 GHT-KSILCMAVVS--DLVCSGS---AD------------KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDS 335 (362)
Q Consensus 274 ~h~-~~v~~~~~~~--~~~~s~s---~D------------~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~ 335 (362)
... .....+...+ .+++|-. .+ .+..+|........ .+...-..-+.++++|+++
T Consensus 146 ~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~---~~~~~l~~pNGI~~s~d~~---- 218 (340)
T d1v04a_ 146 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR---VVAEGFDFANGINISPDGK---- 218 (340)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE---EEEEEESSEEEEEECTTSS----
T ss_pred CccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE---EEcCCCCccceeEECCCCC----
Confidence 322 2345665532 2566621 11 22333332222222 2222234577788876543
Q ss_pred CCCceEEEecCCCCcEEEEecccC
Q 044557 336 SDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 336 ~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.++++-+..+.|+.|++..+
T Consensus 219 ----~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 219 ----YVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp ----EEEEEEGGGTEEEEEEECTT
T ss_pred ----EEEEEeCCCCeEEEEEeCCC
Confidence 46677778889999988643
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=81.55 E-value=16 Score=31.84 Aligned_cols=23 Identities=9% Similarity=0.489 Sum_probs=20.1
Q ss_pred CCCEEEEEcCCCcEEEEeccCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
.|..++.|+.||.++.+|.++++
T Consensus 468 agglVF~G~~dg~l~A~Da~tGe 490 (560)
T d1kv9a2 468 AGNLVFQGTAAGQMHAYSADKGE 490 (560)
T ss_dssp TTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCEEEEECCCCcEEEEECCCCc
Confidence 56788899999999999998765
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.93 E-value=14 Score=30.81 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=59.1
Q ss_pred eEEEEecCCCEEEE-EECCC----cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeC---------------
Q 044557 146 SALALTKDETLLYS-VSWDR----TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSA--------------- 204 (362)
Q Consensus 146 ~~~~~~~~~~~l~s-~s~d~----~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~--------------- 204 (362)
...+++|+++++|- -+.+| .|++.|+.+++.+..... ......++|.+++. ++-...
T Consensus 128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred cceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence 44567999998774 33333 699999999987653221 11124578998887 432211
Q ss_pred -CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE
Q 044557 205 -DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 205 -dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
...|..+.+.+......++.........+..+..++++++++..
T Consensus 206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence 23677777765433222222211222345567788999987643
|