Citrus Sinensis ID: 044593

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
GPLRHVIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEERVRLLSATKETQNGAPVEQASVDSERLEGS
Secondary Structure (PSIPRED)
cccccHHHHcccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEccccccHHHHHHccccccccHHHHHHccccEEEEcccHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHccccccEEccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccccccccccccccccEEEEEEcccHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHcccEccccHHHHHHcccEEEEEEcHHHHHHHHHHcccccccccEEEEEEEcccHcHHHHHHHHccccccEEcccccccccccccccccccEcccEEEEEcccccHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHccccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
GPLRHVIRAIdaaqpfdyesqlhTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVhsrsdhspavrqqlnapffadlndlcelhpDVVLLSTSILstqsvlksipfqrlkrstLFVDVLSvkefprnlflkylpqdfdilcthpmfgpesaksswenlpfmydkvrigndeERIKRVDKFLDVFAKEGCRMvemscfdhdkyaagsqfVTHTMGRVLErfgvesspintkgYETLLDLvdntkgdsfdLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKelfgsaeeEEEEERVRLLSATketqngapveqasvdserlegs
Flexible Loop (DISEMBL)
GPLRHVIRAidaaqpfdyesQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTqsvlksipfqrlkrsTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGpesaksswenLPFMYDKvrigndeerIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELfgsaeeeeeEERVRLLsatketqngapveqasvdserlegs
Low Complexity Region (SEG)
GPLRHVIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAeeeeeeeRVRLLSATKETQNGAPVEQASVDSERLEGS
Disordered region (IsUnstruct)
*****VIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSR*****AVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELF****************************************
Disordered Region (DISOPRED)
**LRHVI*AID**********************IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFG***************************************
Disordered Region (DISEMBL)
GPLRHVIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFG************LLSATKE********************
Disordered Region (DISPRO)
GPLRHVIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEERVRLLSATKETQN*A*VEQA***SE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GPLRHVIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYxxxxxxxxxxxxxxxxxxxxxLFGQMFRVYRKELFGSAEEEEEEERVRLLSATKETQNGAPVEQASVDSERLEGS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	335	2.2.26 [Sep-21-2011]
Q9LMR3	358	Arogenate dehydrogenase 2	yes	no	0.907	0.849	0.685	1e-123
Q944B6	640	Arogenate dehydrogenase 1	no	no	0.871	0.456	0.610	1e-107
Q58029	446	Probable arogenate/prephe	yes	no	0.659	0.495	0.243	7e-13
O60078	431	Probable prephenate dehyd	yes	no	0.764	0.593	0.240	9e-09
P07023	373	T-protein OS=Escherichia	N/A	no	0.767	0.689	0.254	2e-06
P20049	452	Prephenate dehydrogenase	yes	no	0.740	0.548	0.219	6e-05
Q02287	373	T-protein OS=Enterobacter	N/A	no	0.489	0.439	0.261	0.0001

>sp|Q9LMR3|TYRA2_ARATH Arogenate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT2 PE=1 SV=1

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/305 (68%), Positives = 255/305 (83%), Gaps = 1/305 (0%)

Query: 7   IRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS 66
           IRAIDAAQ FDYE+QL ++Y KS++LKIAV+GFGNFGQFL+K   RH H L+ HSRSD+S
Sbjct: 34  IRAIDAAQIFDYETQLKSEYRKSSALKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYS 93

Query: 67  PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK 126
            A    + A FF + +DLCE HPDVVLL TSILST+SVL+S PFQRL+RSTLFVDVLSVK
Sbjct: 94  DAA-NSIGARFFDNPHDLCEQHPDVVLLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVK 152

Query: 127 EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186
           EFP+ LF+KYLP++FDILCTHPMFGPES K SW  LPF+YDKVRIG+   R +R +KFL 
Sbjct: 153 EFPKALFIKYLPKEFDILCTHPMFGPESGKHSWSGLPFVYDKVRIGDAASRQERCEKFLR 212

Query: 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNT 246
           +F  EGC+MVEMSC  HD YAAGSQFVTHTMGRVLE++GVESSPINTKGYETLLDLV+NT
Sbjct: 213 IFENEGCKMVEMSCEKHDYYAAGSQFVTHTMGRVLEKYGVESSPINTKGYETLLDLVENT 272

Query: 247 KGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEER 306
             DSF+L+YGLFMYN N+LEQL+RL+MAFES+K++LFG++ + YRK++FG   +  ++  
Sbjct: 273 SSDSFELFYGLFMYNPNALEQLERLDMAFESVKKELFGRLHQQYRKQMFGGEVQSPKKTE 332

Query: 307 VRLLS 311
            +LL+
Sbjct: 333 QKLLN 337

Involved in the biosynthesis of tyrosine. Has a weak prephenate dehydrogenase activity.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 7EC: 8

>sp|Q944B6|TYRA1_ARATH Arogenate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT1 PE=1 SV=1

 Score =  387 bits (993), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 179/293 (61%), Positives = 231/293 (78%), Gaps = 1/293 (0%)

Query: 6   VIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65
           ++R+ D    ++Y SQ+       + LKI ++GFGNFGQFL K   +  HT+L +SRSD+
Sbjct: 339 MMRSEDVVVKYEYNSQVSGSVNDGSRLKIGIVGFGNFGQFLGKTMVKQGHTVLAYSRSDY 398

Query: 66  SPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV 125
           +     +L   +F+DL+DL E HP+V++L TSILST+ VL+S+PFQRLKRSTLFVDVLSV
Sbjct: 399 TDEA-AKLGVSYFSDLDDLFEEHPEVIILCTSILSTEKVLESLPFQRLKRSTLFVDVLSV 457

Query: 126 KEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL 185
           KEFPRNLFL+ LPQDFDILCTHPMFGPES K+ W NL F++DKVRIG D+ R  R + FL
Sbjct: 458 KEFPRNLFLQTLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGMDDRRKSRCNSFL 517

Query: 186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDN 245
           D+FA+EGCRMVEMSC +HD +AAGSQF+THT+GR+LE+  +ES+PI+TKGYETLL LV+N
Sbjct: 518 DIFAREGCRMVEMSCAEHDWHAAGSQFITHTVGRLLEKLSLESTPIDTKGYETLLKLVEN 577

Query: 246 TKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA 298
           T GDSFDLYYGLF+YN N++EQL+R  +AFES+K QLFG++   +  EL  S+
Sbjct: 578 TAGDSFDLYYGLFLYNPNAMEQLERFHVAFESLKTQLFGRLHSQHSHELAKSS 630

Involved in the biosynthesis of tyrosine. Has no prephenate dehydrogenase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|Q58029|Y612_METJA Probable arogenate/prephenate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0612 PE=4 SV=1

 Score = 75.1 bits (183), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 118/251 (47%), Gaps = 30/251 (11%)

Query: 27  VKSTSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRS-DHSPAVRQQLNAPFFADLNDL 84
           +K+T+L I++IG  +  G++ A+        ++V  R  +    V ++L   F  + N  
Sbjct: 1   MKNTNLTISIIGGTDGLGKWFARYLKNKGFNVIVTGRDIEKGKNVEKELGVEF-TNNNIE 59

Query: 85  CELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDIL 144
                D+V+++  I  T+ V+K +    ++   L +D+ S+KE P     +++ +   ++
Sbjct: 60  AAKKGDIVIVAVPINVTERVIKEVA-PHVREGCLLMDITSIKEIPSKAMEEHVKEGVTVI 118

Query: 145 CTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVF---AKEGCRMVEMSCF 201
            THPMFGP +        P +  +V I    E+ K  + F  V+    KEG +++ +   
Sbjct: 119 PTHPMFGPST--------PSLLRQVVILTPSEKHKNTEWFNKVYNFLKKEGAKVIVIPPE 170

Query: 202 DHDKYAAGSQFVTH----TMGRVLERFGVE-------SSPINTKGYETLLDLVDNTKGDS 250
            HD+     Q +TH    ++G  L+   V+       +SPI    YE ++ ++    G +
Sbjct: 171 KHDRIMGIVQGLTHFAFISLGATLKELNVDIKESRKFASPI----YELMISIIGRIIGQN 226

Query: 251 FDLYYGLFMYN 261
             LY  + M+N
Sbjct: 227 PYLYADIQMFN 237

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|O60078|TYR1_SCHPO Probable prephenate dehydrogenase [NADP(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tyr1 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 31/287 (10%)

Query: 31  SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELH-- 88
           + ++ +IGFG+ G+  A+  ++    + V  R ++  +++       +  L D  ++   
Sbjct: 4   TFQVGIIGFGDMGRLYAEYISKAGWRVNVCDRPENYESIQATYGNGGYTVLKDGFQVSRT 63

Query: 89  PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
            D +L S        V+ ++     K   +     S K    N F KYLP+D DI+  H 
Sbjct: 64  SDYILYSVEAEHIDKVV-ALYGPATKVGAIVGGQTSCKAPEMNAFEKYLPEDVDIISCHS 122

Query: 149 MFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAA 208
           M GP+    S    P +   +R    +E  + V++ L  F      +V +S  +HD+  A
Sbjct: 123 MHGPKVNPKS---QPLVI--IRHRASDEHFEIVNEILSCFKSS---VVYLSAKEHDRITA 174

Query: 209 GSQFVTH----TMGRVLERFGVESSPIN--TKGYETL-LDLVDNTKGDSFDLYYGLFMYN 261
            +Q VTH    TMG            IN    G E + ++L        + +Y GL + N
Sbjct: 175 DTQAVTHAAFLTMGLAWHANNQYPWEINRWCGGIENIKMNLSMRIYSSKWHVYAGLAILN 234

Query: 262 KNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEERVR 308
             +  Q+Q+    + S   +LF         +L  S + +E E+R+R
Sbjct: 235 PEAQRQIQQ----YASSVTELF---------KLAISGKAKEYEDRIR 268

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P07023|TYRA_ECOLI T-protein OS=Escherichia coli (strain K12) GN=tyrA PE=1 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 119/307 (38%), Gaps = 50/307 (16%)

Query: 31  SLKIAVI--GFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELH 88
           SL+  VI  G G  G+   K      + + +  + D   A      A   AD        
Sbjct: 97  SLRPVVIVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRA------ADIVADAG------ 144

Query: 89  PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
             +V++S  I  T+ V+  +P   L +  + VD+ SVK  P    L  +  D  +L  HP
Sbjct: 145 --MVIVSVPIHVTEQVIGKLP--PLPKDCILVDLASVKNGPLQAML--VAHDGPVLGLHP 198

Query: 149 MFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAA 208
           MFGP+S          +  +V +  D  + +    FL+     G R+  +S  +HD+  A
Sbjct: 199 MFGPDSGS--------LAKQVVVWCDGRKPEAYQWFLEQIQVWGARLHRISAVEHDQNMA 250

Query: 209 GSQ----FVTHTMGR-------VLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGL 257
             Q    F T   G         LE+    SSPI    Y   L +V         LY  +
Sbjct: 251 FIQALRHFATFAYGLHLAEENVQLEQLLALSSPI----YRLELAMVGRLFAQDPQLYADI 306

Query: 258 FMYNKNSLEQLQRLEMAF-ESIK------QQLFGQMFRVYRKELFGSAEEEEEEERVRLL 310
            M ++ +L  ++R    F E+I+      +Q F   FR         A+  + E RV L 
Sbjct: 307 IMSSERNLALIKRYYKRFGEAIELLEQGDKQAFIDSFRKVEHWFGDYAQRFQSESRVLLR 366

Query: 311 SATKETQ 317
            A    Q
Sbjct: 367 QANDNRQ 373

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P20049|TYR1_YEAST Prephenate dehydrogenase [NADP(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TYR1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 113/273 (41%), Gaps = 25/273 (9%)

Query: 34  IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLND--LCELHPDV 91
           I +IG G+ G   A  F      ++   R ++   ++++  +  F  + +  L     D 
Sbjct: 16  IGIIGLGDMGLLYANKFTDAGWGVICCDREEYYDELKEKYASAKFELVKNGHLVSRQSDY 75

Query: 92  VLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFG 151
           ++ S    +   ++ +      K  T+     S K      F KYLP+D DI+  H + G
Sbjct: 76  IIYSVEASNISKIVATYGPSS-KVGTIVGGQTSCKLPEIEAFEKYLPKDCDIITVHSLHG 134

Query: 152 PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD-VFAKEGCRMVEMSCFDHDKYAAGS 210
           P   K + E  P +     I N   +     +F++ V A    + V ++  +HDK  A +
Sbjct: 135 P---KVNTEGQPLV-----IINHRSQYPESFEFVNSVMACLKSKQVYLTYEEHDKITADT 186

Query: 211 QFVTH----TMGRVLERFGVESSPINT-KGYETLLDLVDNTK----GDSFDLYYGLFMYN 261
           Q VTH    +MG    +  +    +   K Y  L ++  N       + + +Y GL + N
Sbjct: 187 QAVTHAAFLSMGSAWAKIKIYPWTLGVNKWYGGLENVKVNISLRIYSNKWHVYAGLAITN 246

Query: 262 KNSLEQLQRLEMAFESIKQQLFGQMFRVYRKEL 294
            ++ +Q+    + + +   +LF  M     +EL
Sbjct: 247 PSAHQQI----LQYATSATELFSLMIDNKEQEL 275

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q02287|TYRA_ENTAG T-protein OS=Enterobacter agglomerans GN=tyrA PE=4 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 27/191 (14%)

Query: 91  VVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMF 150
           +V++S  I  T+ V+  +P   L    + VD+ SVK  P    L     +  +L  HPMF
Sbjct: 145 MVIISVPIHLTEQVIAQLP--PLPEDCILVDLASVKNRPLQAMLA--AHNGPVLGLHPMF 200

Query: 151 GPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGS 210
           GP+S          +  +V +  D  + +    FL+     G R+  +S  +HD+  A  
Sbjct: 201 GPDSGS--------LAKQVVVWCDGRQPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFI 252

Query: 211 Q----FVTHTMGRVLERFGVE-------SSPINTKGYETLLDLVDNTKGDSFDLYYGLFM 259
           Q    F T   G  L    V        SSPI    Y   L +V         LY  + M
Sbjct: 253 QALRHFATFAYGLHLAEENVNLDQLLALSSPI----YRLELAMVGRLFAQDPQLYADIIM 308

Query: 260 YNKNSLEQLQR 270
            ++++L  ++R
Sbjct: 309 SSESNLALIKR 319

Enterobacter agglomerans (taxid: 549)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
224128622	363	arogenate dehydrogenase [Populus trichoc	0.967	0.892	0.667	1e-128
359482778	686	PREDICTED: LOW QUALITY PROTEIN: arogenat	0.856	0.418	0.732	1e-126
147806271	379	hypothetical protein VITISV_006626 [Viti	0.859	0.759	0.730	1e-126
297844480	353	prephenate dehydrogenase family protein	0.907	0.861	0.691	1e-122
15218283	358	prephenate dehydrogenase family protein	0.907	0.849	0.685	1e-121
21703110	358	At1g15710/F7H2_5 [Arabidopsis thaliana]	0.907	0.849	0.681	1e-121
325516252	377	arogenate dehydrogenase 1 [Solanum penne	0.982	0.872	0.620	1e-120
255579835	690	prephenate dehydrogenase, putative [Rici	0.874	0.424	0.663	1e-118
356513898	685	PREDICTED: arogenate dehydrogenase 1, ch	0.973	0.475	0.628	1e-118
357478359	690	Arogenate dehydrogenase [Medicago trunca	0.976	0.473	0.619	1e-116

>gi|224128622|ref|XP_002329049.1| arogenate dehydrogenase [Populus trichocarpa] gi|222839720|gb|EEE78043.1| arogenate dehydrogenase [Populus trichocarpa]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/331 (66%), Positives = 274/331 (82%), Gaps = 7/331 (2%)

Query: 2   PLRHV--IRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLV 59
           PL++   IR+IDAAQP+DYES L TQ++KS SLKIA++GFGNFGQFL+K  +R  HTLL 
Sbjct: 36  PLKNTLRIRSIDAAQPYDYESHLRTQHLKSQSLKIAILGFGNFGQFLSKTLSRQGHTLLA 95

Query: 60  HSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLF 119
           +SRSD++  + + L   F+++ +DL E HP+VV+L TSILST+ VL+++PFQRLKRSTL 
Sbjct: 96  YSRSDYT-DIAKNLGVTFYSNPHDLFESHPEVVILCTSILSTEKVLQTLPFQRLKRSTLI 154

Query: 120 VDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIK 179
           VDVLSVKEF +N+ LKYLP +FDILCTHPMFGPES K SW  LPF+YDKVRIGN+E+RI 
Sbjct: 155 VDVLSVKEFAKNILLKYLPVEFDILCTHPMFGPESGKISWVGLPFVYDKVRIGNEEDRIT 214

Query: 180 RVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETL 239
           RV++FLDVFAKEGCRMVEM+C +HD+YAAGSQFVTHTMGRVLERFG++SSPINTKGY+TL
Sbjct: 215 RVERFLDVFAKEGCRMVEMTCAEHDRYAAGSQFVTHTMGRVLERFGLDSSPINTKGYDTL 274

Query: 240 LDLVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAE 299
           LDLV+NT GDSF+LYYGLFMYNKN++EQL+RL+MAFE+IK++LFG++  VYRK+LFG+A+
Sbjct: 275 LDLVENTGGDSFELYYGLFMYNKNAMEQLERLDMAFEAIKKELFGKLHHVYRKQLFGNAD 334

Query: 300 EEEEEERVRLLSATKETQNGAPVEQASVDSE 330
           E  EE         K   NGAP     V  E
Sbjct: 335 EGAEERP----KVQKLLHNGAPPSDDVVKQE 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482778|ref|XP_003632837.1| PREDICTED: LOW QUALITY PROTEIN: arogenate dehydrogenase 1, chloroplastic-like [Vitis vinifera]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/288 (73%), Positives = 252/288 (87%), Gaps = 1/288 (0%)

Query: 8   RAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP 67
           RAIDAAQP+DYE+QL TQ+ KS +LKIA+IGFGNFGQFLAK F +  HT+L HSRS++  
Sbjct: 350 RAIDAAQPYDYETQLRTQFNKSNNLKIAIIGFGNFGQFLAKTFVKQGHTVLAHSRSNYVD 409

Query: 68  AVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKE 127
             R+ L   FF D +DLCE HP+VVLL +SILST+SVLKS+PFQRL+R+TLFVDVLSVKE
Sbjct: 410 VARK-LGVSFFQDPHDLCEEHPEVVLLCSSILSTKSVLKSLPFQRLRRNTLFVDVLSVKE 468

Query: 128 FPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDV 187
           FPRNLFL+ LP +FDILCTHPMFGPES K+ W  LPF+YDKVRIGNDE R+ R  KFLD+
Sbjct: 469 FPRNLFLETLPAEFDILCTHPMFGPESGKNGWAGLPFVYDKVRIGNDEFRMARCSKFLDI 528

Query: 188 FAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTK 247
           FA+EGCRMVEM+C +HDKYAAGSQF+THTMGRVLERFG+ES+ INTKGYETLL+LV+NT 
Sbjct: 529 FAREGCRMVEMTCAEHDKYAAGSQFITHTMGRVLERFGLESTEINTKGYETLLNLVENTA 588

Query: 248 GDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELF 295
           GDSFDLYYGLF+YN N++EQL+RL+MAFESIK+++FG M R+YRK+LF
Sbjct: 589 GDSFDLYYGLFVYNNNAMEQLERLDMAFESIKKEIFGYMHRLYRKQLF 636

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806271|emb|CAN59808.1| hypothetical protein VITISV_006626 [Vitis vinifera]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/289 (73%), Positives = 252/289 (87%), Gaps = 1/289 (0%)

Query: 7   IRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS 66
           I AIDAAQP+DYE+QL TQ+ KS +LKIA+IGFGNFGQFLAK F +  HT+L HSRS++ 
Sbjct: 49  ITAIDAAQPYDYETQLRTQFNKSNNLKIAIIGFGNFGQFLAKTFVKQGHTVLAHSRSNYV 108

Query: 67  PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK 126
              R+ L   FF D +DLCE HP+VVLL +SILST+SVLKS+PFQRL+R+TLFVDVLSVK
Sbjct: 109 DVARK-LGVSFFQDPHDLCEEHPEVVLLCSSILSTKSVLKSLPFQRLRRNTLFVDVLSVK 167

Query: 127 EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186
           EFPRNLFL+ LP +FDILCTHPMFGPES K+ W  LPF+YDKVRIGNDE R+ R  KFLD
Sbjct: 168 EFPRNLFLETLPAEFDILCTHPMFGPESGKNGWAGLPFVYDKVRIGNDEFRMARCSKFLD 227

Query: 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNT 246
           +FA+EGCRMVEM+C +HDKYAAGSQF+THTMGRVLERFG+ES+ INTKGYETLL+LV+NT
Sbjct: 228 IFAREGCRMVEMTCAEHDKYAAGSQFITHTMGRVLERFGLESTEINTKGYETLLNLVENT 287

Query: 247 KGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELF 295
            GDSFDLYYGLF+YN N++EQL+RL+MAFESIK+++FG M R+YRK+LF
Sbjct: 288 AGDSFDLYYGLFVYNNNAMEQLERLDMAFESIKKEIFGYMHRLYRKQLF 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844480|ref|XP_002890121.1| prephenate dehydrogenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297335963|gb|EFH66380.1| prephenate dehydrogenase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/305 (69%), Positives = 255/305 (83%), Gaps = 1/305 (0%)

Query: 7   IRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS 66
           IRAIDAAQ FDYE+QL ++Y KS++LKIAV+GFGNFGQFL+K   RH H L+ HSRSD+S
Sbjct: 34  IRAIDAAQIFDYETQLKSEYRKSSALKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYS 93

Query: 67  PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK 126
            A    + A FF + +DLCE HPDVVLL TSILST+SVL+S PFQRL+RSTLFVDVLSVK
Sbjct: 94  DAA-NSIGARFFGNPHDLCEQHPDVVLLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVK 152

Query: 127 EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186
           EFP+ LFLKYLP++FDILCTHPMFGPES K SW  LPF+YDKVRIG+   R +R +KFL 
Sbjct: 153 EFPKALFLKYLPKEFDILCTHPMFGPESGKHSWSGLPFVYDKVRIGDAASRHERCEKFLR 212

Query: 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNT 246
           VF  EGC+MVEMSC  HD YAAGSQFVTHTMGRVLE++GVESSPINTKGYETLLDLV+NT
Sbjct: 213 VFENEGCKMVEMSCEKHDYYAAGSQFVTHTMGRVLEKYGVESSPINTKGYETLLDLVENT 272

Query: 247 KGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEER 306
             DSF+L+YGLFMYN N+LEQL+RL+MAFES+K++LFG++ + YRK++FG   +  ++  
Sbjct: 273 SSDSFELFYGLFMYNPNALEQLERLDMAFESVKKELFGRLHQQYRKQMFGGEVQSSKKTE 332

Query: 307 VRLLS 311
            +LL+
Sbjct: 333 QKLLN 337

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218283|ref|NP_173023.1| prephenate dehydrogenase family protein [Arabidopsis thaliana] gi|75174818|sp|Q9LMR3.1|TYRA2_ARATH RecName: Full=Arogenate dehydrogenase 2, chloroplastic; AltName: Full=TyrAAT2; Flags: Precursor gi|8927650|gb|AAF82141.1|AC034256_5 Contains similarity to embryonic abundant protein (EMB20) from Picea glauca gb|L47749 [Arabidopsis thaliana] gi|16903100|gb|AAL30406.1| arogenate dehydrogenase isoform 2 [Arabidopsis thaliana] gi|332191231|gb|AEE29352.1| prephenate dehydrogenase family protein [Arabidopsis thaliana]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/305 (68%), Positives = 255/305 (83%), Gaps = 1/305 (0%)

Query: 7   IRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS 66
           IRAIDAAQ FDYE+QL ++Y KS++LKIAV+GFGNFGQFL+K   RH H L+ HSRSD+S
Sbjct: 34  IRAIDAAQIFDYETQLKSEYRKSSALKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYS 93

Query: 67  PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK 126
            A    + A FF + +DLCE HPDVVLL TSILST+SVL+S PFQRL+RSTLFVDVLSVK
Sbjct: 94  DAA-NSIGARFFDNPHDLCEQHPDVVLLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVK 152

Query: 127 EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186
           EFP+ LF+KYLP++FDILCTHPMFGPES K SW  LPF+YDKVRIG+   R +R +KFL 
Sbjct: 153 EFPKALFIKYLPKEFDILCTHPMFGPESGKHSWSGLPFVYDKVRIGDAASRQERCEKFLR 212

Query: 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNT 246
           +F  EGC+MVEMSC  HD YAAGSQFVTHTMGRVLE++GVESSPINTKGYETLLDLV+NT
Sbjct: 213 IFENEGCKMVEMSCEKHDYYAAGSQFVTHTMGRVLEKYGVESSPINTKGYETLLDLVENT 272

Query: 247 KGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEER 306
             DSF+L+YGLFMYN N+LEQL+RL+MAFES+K++LFG++ + YRK++FG   +  ++  
Sbjct: 273 SSDSFELFYGLFMYNPNALEQLERLDMAFESVKKELFGRLHQQYRKQMFGGEVQSPKKTE 332

Query: 307 VRLLS 311
            +LL+
Sbjct: 333 QKLLN 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21703110|gb|AAM74497.1| At1g15710/F7H2_5 [Arabidopsis thaliana] gi|23308331|gb|AAN18135.1| At1g15710/F7H2_5 [Arabidopsis thaliana] gi|62320678|dbj|BAD95346.1| arogenate dehydrogenase isoform 2 [Arabidopsis thaliana]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/305 (68%), Positives = 254/305 (83%), Gaps = 1/305 (0%)

Query: 7   IRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS 66
           IRAIDAAQ FDYE+QL ++Y KS++LKIAV+GFGNFGQFL+K   RH H L+ HSRSD+S
Sbjct: 34  IRAIDAAQIFDYETQLKSEYRKSSALKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYS 93

Query: 67  PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK 126
            A    + A FF + +DLCE HPDVVLL TSILST+SVL+S PFQRL+RSTLFVDVLSVK
Sbjct: 94  DAA-NSIGARFFDNPHDLCEQHPDVVLLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVK 152

Query: 127 EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186
           EFP+ LF+KYLP++FDILCTHPMFGPES K SW  LPF+YDKVRIG+   R +R +KFL 
Sbjct: 153 EFPKALFIKYLPKEFDILCTHPMFGPESGKHSWSGLPFVYDKVRIGDAASRQERCEKFLR 212

Query: 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNT 246
           +F  EGC+M EMSC  HD YAAGSQFVTHTMGRVLE++GVESSPINTKGYETLLDLV+NT
Sbjct: 213 IFENEGCKMFEMSCEKHDYYAAGSQFVTHTMGRVLEKYGVESSPINTKGYETLLDLVENT 272

Query: 247 KGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEER 306
             DSF+L+YGLFMYN N+LEQL+RL+MAFES+K++LFG++ + YRK++FG   +  ++  
Sbjct: 273 SSDSFELFYGLFMYNPNALEQLERLDMAFESVKKELFGRLHQQYRKQMFGGEVQSPKKTE 332

Query: 307 VRLLS 311
            +LL+
Sbjct: 333 QKLLN 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325516252|gb|ADZ24704.1| arogenate dehydrogenase 1 [Solanum pennellii]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/335 (62%), Positives = 264/335 (78%), Gaps = 6/335 (1%)

Query: 1   GPLRHVIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVH 60
           G  R  I+AIDAAQP+DYE+ +  QY +S  LKIA++GFGNFGQFLAK+F    H +L H
Sbjct: 49  GCRRLSIKAIDAAQPYDYEALVSNQYAQSGRLKIAIVGFGNFGQFLAKSFVSKGHFVLAH 108

Query: 61  SRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFV 120
           SR+D+S  +   L   FF D +DLCE HPDV++L TSI+ST++VL+S+P QRLKR+TLFV
Sbjct: 109 SRTDYS-QIANSLGVSFFQDPHDLCEQHPDVIVLCTSIISTETVLRSLPIQRLKRNTLFV 167

Query: 121 DVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKR 180
           DVLSVKEFP+N+FL+ LP  FDILCTHPMFGPES K SW++L FM+DKVRIG    R  R
Sbjct: 168 DVLSVKEFPKNIFLQVLPTHFDILCTHPMFGPESGKDSWKDLIFMFDKVRIGEGRSRTAR 227

Query: 181 VDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLL 240
           VDKFLD+F KEGCRMV M+C +HDK+AAGSQF+THTMGRVLE+ G+ES+PINTKGYETLL
Sbjct: 228 VDKFLDIFEKEGCRMVPMTCAEHDKHAAGSQFITHTMGRVLEKLGLESTPINTKGYETLL 287

Query: 241 DLVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEE 300
           +LVDNT  DSFDLYYGLFMYNKN++E+L+RL++AFE++K++LFG +  + RK+LFG AEE
Sbjct: 288 NLVDNTASDSFDLYYGLFMYNKNAMEELERLDLAFEALKKELFGHLHDLLRKQLFGKAEE 347

Query: 301 EEEEERVRLLSATKETQNGAPVEQASVDSERLEGS 335
             +    R+LS  K  +NG  +   S D+ + E +
Sbjct: 348 AGQR---RVLS--KLPRNGYALPAPSSDAVKPENN 377

Source: Solanum pennellii

Species: Solanum pennellii

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579835|ref|XP_002530754.1| prephenate dehydrogenase, putative [Ricinus communis] gi|223529670|gb|EEF31614.1| prephenate dehydrogenase, putative [Ricinus communis]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/297 (66%), Positives = 251/297 (84%), Gaps = 4/297 (1%)

Query: 12  AAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ 71
           AAQP++Y+++       ++ LKIA++GFGNFGQFLAK   R  HT+L +SRSD+S    Q
Sbjct: 373 AAQPYEYKAKTSNCINDNSKLKIAIVGFGNFGQFLAKTLVRQGHTVLAYSRSDYSDEA-Q 431

Query: 72  QLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRN 131
           +L   +F+D NDLCE HP+V+LL TSILST++VLKS+P QRLKRSTLFVDVLSVKEFPRN
Sbjct: 432 KLGVSYFSDANDLCEEHPEVILLCTSILSTENVLKSLPVQRLKRSTLFVDVLSVKEFPRN 491

Query: 132 LFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKE 191
           LFL++LP DFDILCTHPMFGPES K+ W +LPF++DKVR+G+DE R+ R D+FLD+FA+E
Sbjct: 492 LFLQHLPPDFDILCTHPMFGPESGKNGWNHLPFLFDKVRVGSDERRVSRCDRFLDIFARE 551

Query: 192 GCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSF 251
           GCRMVEMSC +HD +AAGSQF+THTMGR+LE+ G+ES+PINTKGYETLL+LV+NT GDSF
Sbjct: 552 GCRMVEMSCSEHDWHAAGSQFITHTMGRILEKLGLESTPINTKGYETLLNLVENTAGDSF 611

Query: 252 DLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEERVR 308
           DLYYGLFMYN N++EQL+RL++AFES+K+QLFG++  V RK+LF   E EE+ + +R
Sbjct: 612 DLYYGLFMYNVNAMEQLERLDLAFESLKKQLFGRLHGVLRKQLF---ENEEKSQVLR 665

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513898|ref|XP_003525645.1| PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Glycine max]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/334 (62%), Positives = 257/334 (76%), Gaps = 8/334 (2%)

Query: 7   IRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS 66
           IRAIDAAQPFDYES++  Q+  S  LKIA++GFGNFGQFLA+   R  HT+L HSRSDHS
Sbjct: 49  IRAIDAAQPFDYESRMAQQFHDSQKLKIAIVGFGNFGQFLAQTLVRQGHTVLAHSRSDHS 108

Query: 67  PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK 126
            A  QQL   FF + +DLCE HP+V+LL +SI+STQ VL ++P QRLKRSTLFVDVLSVK
Sbjct: 109 LAA-QQLGVTFFPNPHDLCEEHPEVILLCSSIISTQRVLLTLPLQRLKRSTLFVDVLSVK 167

Query: 127 EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186
           EFP+NL L  LP DFD+LCTHPMFGP+SA  +W  LPF+Y+KVRIG+DE RI R +KFL 
Sbjct: 168 EFPKNLLLHALPSDFDVLCTHPMFGPQSAPRAWTGLPFVYEKVRIGSDEHRIARCEKFLG 227

Query: 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNT 246
           +FA+EGCRMVEMSC DHDK+AAGSQF+THT+GRVLE   VES+PINTKGYE+LL+LV+NT
Sbjct: 228 IFAREGCRMVEMSCADHDKFAAGSQFITHTVGRVLEMLTVESTPINTKGYESLLNLVENT 287

Query: 247 KGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELF-----GSAEEE 301
            GDSFDL+YGLFMYNKNSLE L+RL+ AFE +++QL G++  V R++LF     G  +  
Sbjct: 288 SGDSFDLFYGLFMYNKNSLEMLERLDFAFEDLRKQLMGRLHDVVREQLFDNAGMGKVQSL 347

Query: 302 EEEERVRLLSATKETQNGAPVEQASVDSERLEGS 335
            +E   +LL   K  QNG+     S+ S  L  S
Sbjct: 348 PDEYVHQLL--LKNGQNGSAAPVLSLPSNDLRSS 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478359|ref|XP_003609465.1| Arogenate dehydrogenase [Medicago truncatula] gi|355510520|gb|AES91662.1| Arogenate dehydrogenase [Medicago truncatula]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/334 (61%), Positives = 253/334 (75%), Gaps = 7/334 (2%)

Query: 6   VIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65
            IRAIDAAQ FDYES++  Q+  S  LKIA+IGFGNFGQFLA  F R  HT+L HSRSD+
Sbjct: 47  TIRAIDAAQSFDYESKIALQFHNSQKLKIAIIGFGNFGQFLATTFVRQGHTVLAHSRSDY 106

Query: 66  SPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV 125
           S AV Q +   FF + +DLCE HP+V+LL TSI+S Q VL S+PFQRLKRSTLFVDVLSV
Sbjct: 107 S-AVAQNIGVKFFPNADDLCEEHPEVILLCTSIISAQQVLLSLPFQRLKRSTLFVDVLSV 165

Query: 126 KEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL 185
           KEFP+N FL+ LP  FDI+C+HPMFGPES  S W+ LPF+Y+KVRIGN+E R+ R +KFL
Sbjct: 166 KEFPKNFFLEILPNYFDIICSHPMFGPESGSSGWKGLPFVYEKVRIGNNETRVSRCEKFL 225

Query: 186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDN 245
           DVF +EGCRMVEMSC DHD+YAAGSQF+THT+GRVL    +ES+PINTKGYE+LL+LV+N
Sbjct: 226 DVFGREGCRMVEMSCADHDRYAAGSQFITHTVGRVLGMLTLESTPINTKGYESLLNLVEN 285

Query: 246 TKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEE 305
           T GDSFDLYYGLFM+NKNSLE L+RL++AFE +++QL   +  V R +LF  A + +   
Sbjct: 286 TSGDSFDLYYGLFMFNKNSLEMLERLDLAFEDLRKQLIAHLHDVVRNQLFEDAVKVQNLG 345

Query: 306 RVRLLSATKETQNGAPV-----EQASVDSERLEG 334
                 A K  QNG+ +      Q S D+ RL G
Sbjct: 346 DDSNHVARKHGQNGSAIVLSSKNQRSADA-RLHG 378

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:2036164	358	AT1G15710 [Arabidopsis thalian	0.907	0.849	0.685	3.6e-112
TAIR|locus:2183532	640	AT5G34930 [Arabidopsis thalian	0.871	0.456	0.610	3.2e-97
TIGR_CMR|CBU_0984	258	CBU_0984 "prephenate dehydroge	0.632	0.821	0.285	3e-21
TIGR_CMR|SPO_1379	264	SPO_1379 "prephenate dehydroge	0.617	0.784	0.257	3.9e-09
POMBASE|SPCC1494.04c	431	tyr1 "prephenate dehydrogenase	0.698	0.542	0.245	1.7e-07
TIGR_CMR|DET_0460	287	DET_0460 "prephenate dehydroge	0.486	0.567	0.293	9.6e-07
UNIPROTKB|P07023	373	tyrA "TyrA" [Escherichia coli	0.638	0.573	0.256	0.00025
SGD|S000000370	452	TYR1 "Prephenate dehydrogenase	0.752	0.557	0.228	0.00034

TAIR|locus:2036164 AT1G15710 [Arabidopsis thaliana (taxid:3702)]

 Score = 1107 (394.7 bits), Expect = 3.6e-112, P = 3.6e-112
 Identities = 209/305 (68%), Positives = 252/305 (82%)

Query:     7 IRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS 66
             IRAIDAAQ FDYE+QL ++Y KS++LKIAV+GFGNFGQFL+K   RH H L+ HSRSD+S
Sbjct:    34 IRAIDAAQIFDYETQLKSEYRKSSALKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYS 93

Query:    67 PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK 126
              A    + A FF + +DLCE HPDVVLL TSILST+SVL+S PFQRL+RSTLFVDVLSVK
Sbjct:    94 DAANS-IGARFFDNPHDLCEQHPDVVLLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVK 152

Query:   127 EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186
             EFP+ LF+KYLP++FDILCTHPMFGPES K SW  LPF+YDKVRIG+   R +R +KFL 
Sbjct:   153 EFPKALFIKYLPKEFDILCTHPMFGPESGKHSWSGLPFVYDKVRIGDAASRQERCEKFLR 212

Query:   187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNT 246
             +F  EGC+MVEMSC  HD YAAGSQFVTHTMGRVLE++GVESSPINTKGYETLLDLV+NT
Sbjct:   213 IFENEGCKMVEMSCEKHDYYAAGSQFVTHTMGRVLEKYGVESSPINTKGYETLLDLVENT 272

Query:   247 KGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAXXXXXXXR 306
               DSF+L+YGLFMYN N+LEQL+RL+MAFES+K++LFG++ + YRK++FG          
Sbjct:   273 SSDSFELFYGLFMYNPNALEQLERLDMAFESVKKELFGRLHQQYRKQMFGGEVQSPKKTE 332

Query:   307 VRLLS 311
              +LL+
Sbjct:   333 QKLLN 337

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004665 "prephenate dehydrogenase (NADP+) activity" evidence=IEA;ISS

GO:0006571 "tyrosine biosynthetic process" evidence=IEA;ISS

GO:0008977 "prephenate dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0006567 "threonine catabolic process" evidence=RCA

TAIR|locus:2183532 AT5G34930 [Arabidopsis thaliana (taxid:3702)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 179/293 (61%), Positives = 231/293 (78%)

Query:     6 VIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65
             ++R+ D    ++Y SQ+       + LKI ++GFGNFGQFL K   +  HT+L +SRSD+
Sbjct:   339 MMRSEDVVVKYEYNSQVSGSVNDGSRLKIGIVGFGNFGQFLGKTMVKQGHTVLAYSRSDY 398

Query:    66 SPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV 125
             +    + L   +F+DL+DL E HP+V++L TSILST+ VL+S+PFQRLKRSTLFVDVLSV
Sbjct:   399 TDEAAK-LGVSYFSDLDDLFEEHPEVIILCTSILSTEKVLESLPFQRLKRSTLFVDVLSV 457

Query:   126 KEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL 185
             KEFPRNLFL+ LPQDFDILCTHPMFGPES K+ W NL F++DKVRIG D+ R  R + FL
Sbjct:   458 KEFPRNLFLQTLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGMDDRRKSRCNSFL 517

Query:   186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDN 245
             D+FA+EGCRMVEMSC +HD +AAGSQF+THT+GR+LE+  +ES+PI+TKGYETLL LV+N
Sbjct:   518 DIFAREGCRMVEMSCAEHDWHAAGSQFITHTVGRLLEKLSLESTPIDTKGYETLLKLVEN 577

Query:   246 TKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA 298
             T GDSFDLYYGLF+YN N++EQL+R  +AFES+K QLFG++   +  EL  S+
Sbjct:   578 TAGDSFDLYYGLFLYNPNAMEQLERFHVAFESLKTQLFGRLHSQHSHELAKSS 630

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004665 "prephenate dehydrogenase (NADP+) activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006571 "tyrosine biosynthetic process" evidence=IEA;ISS

GO:0008977 "prephenate dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006567 "threonine catabolic process" evidence=RCA

TIGR_CMR|CBU_0984 CBU_0984 "prephenate dehydrogenase family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 65/228 (28%), Positives = 120/228 (52%)

Query:    34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVL 93
             I +IG G FG  L++  +      +   + D  P +   +N   F DL  + +L    + 
Sbjct:     9 IGIIGCGRFGALLSEMLSEEFEVSVYDVKPD--PYLTH-IN---FTDLESVLQL--STIF 60

Query:    94 LSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPE 153
             ++  I   ++ +  I  + +K++T+ +DV SVK +P  +   +LP    I+ THP+FGP+
Sbjct:    61 IAVPIHHFKNTIIKIASKLIKKTTV-IDVCSVKCYPVEIMQAHLPPSVGIIATHPLFGPD 119

Query:   154 SAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFV 213
             S + +   L  M    R  +D       + + + F+ +  +++EM+   HD+++A SQ +
Sbjct:   120 SLQKA--QLKMMMHPARDTHD-----CYEFWKNYFSSKKIKILEMTPDQHDRFSARSQSI 172

Query:   214 THTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYN 261
             TH +GR LE  G +S+ ++T GY+ LL ++  T  D +DL+  L  +N
Sbjct:   173 THFIGRTLELMGSQSTEMDTIGYKNLLAVMAQTCNDKWDLFLDLKRFN 220

GO:0006571 "tyrosine biosynthetic process" evidence=ISS

GO:0008977 "prephenate dehydrogenase activity" evidence=ISS

TIGR_CMR|SPO_1379 SPO_1379 "prephenate dehydrogenase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 156 (60.0 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 57/221 (25%), Positives = 93/221 (42%)

Query:    30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHP 89
             T   + + GFG FG+ +A     H   L+      H PA+    N P    +    E   
Sbjct:    20 TFRSVGLFGFGAFGRLIATHLTPHLPCLV------HDPALPDGANLPAGLSIASQAEAAG 73

Query:    90 -DVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
              D+V+L+  +       ++I    L+   +  DV SVK  P  +    LP    ++ THP
Sbjct:    74 CDLVILAMPVAGIAEACRAIA-PHLRPGAVVADVGSVKMTPAAIMQATLPGHVALIGTHP 132

Query:   149 MFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAA 208
             +FGP+SA+            +R G        V  FL   A+ G R++  +   HD+ AA
Sbjct:   133 LFGPQSARHGIAGHKIALCPLR-GRAH---LPVAAFLR--ARLGLRVILTTPEAHDREAA 186

Query:   209 GSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGD 249
               Q +TH + + + R G     + T  ++ L   V+  + D
Sbjct:   187 TVQGLTHLIAQAMNRMGPLPDRMTTASFDLLKQAVEMVRHD 227

GO:0006571 "tyrosine biosynthetic process" evidence=ISS

GO:0008977 "prephenate dehydrogenase activity" evidence=ISS

POMBASE|SPCC1494.04c tyr1 "prephenate dehydrogenase [NADP+] Tyr1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 147 (56.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 62/253 (24%), Positives = 110/253 (43%)

Query:    27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCE 86
             +K T  ++ +IGFG+ G+  A+  ++    + V  R ++  +++       +  L D  +
Sbjct:     1 MKET-FQVGIIGFGDMGRLYAEYISKAGWRVNVCDRPENYESIQATYGNGGYTVLKDGFQ 59

Query:    87 LH--PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDIL 144
             +    D +L S        V+ ++     K   +     S K    N F KYLP+D DI+
Sbjct:    60 VSRTSDYILYSVEAEHIDKVV-ALYGPATKVGAIVGGQTSCKAPEMNAFEKYLPEDVDII 118

Query:   145 CTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHD 204
               H M GP   K + ++ P +   +R    +E  + V++ L  F      +V +S  +HD
Sbjct:   119 SCHSMHGP---KVNPKSQPLVI--IRHRASDEHFEIVNEILSCFKSS---VVYLSAKEHD 170

Query:   205 KYAAGSQFVTH----TMGRVLERFGVESSPINT--KGYETL-LDLVDNTKGDSFDLYYGL 257
             +  A +Q VTH    TMG            IN    G E + ++L        + +Y GL
Sbjct:   171 RITADTQAVTHAAFLTMGLAWHANNQYPWEINRWCGGIENIKMNLSMRIYSSKWHVYAGL 230

Query:   258 FMYNKNSLEQLQR 270
              + N  +  Q+Q+
Sbjct:   231 AILNPEAQRQIQQ 243

GO:0004665 "prephenate dehydrogenase (NADP+) activity" evidence=ISM;IMP

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006571 "tyrosine biosynthetic process" evidence=ISM;IMP

GO:0008977 "prephenate dehydrogenase activity" evidence=IEA

TIGR_CMR|DET_0460 DET_0460 "prephenate dehydrogenase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 137 (53.3 bits), Expect = 9.6e-07, P = 9.6e-07
 Identities = 52/177 (29%), Positives = 86/177 (48%)

Query:    32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHP 89
             +KI ++G  G  GQ+ ++    + H + +  R+    A V  +L +      + L E+  
Sbjct:     1 MKIGILGGSGKMGQWFSRFLTENGHQVWLWGRNPSKLAPVASRLGSQVITQPDQLTEM-- 58

Query:    90 DVVLLSTSILSTQSVLKSI-PFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
             D +++S  I + +  LK I PF   K   +  D+ SVKE P  L  +YLP     L THP
Sbjct:    59 DCLVISVPIDAFEDTLKEIAPFT--KPEQMVFDLCSVKERPVELMHQYLPH-CRTLGTHP 115

Query:   149 MFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDK 205
             +FGP  AKS  +   F+      G + E  ++V  +L+   K G  +  +S  +HD+
Sbjct:   116 VFGP-GAKSL-KGYNFILTPTT-GAETELAEKVKIWLE---KHGSTVSLISPEEHDR 166

GO:0008977 "prephenate dehydrogenase activity" evidence=ISS

UNIPROTKB|P07023 tyrA "TyrA" [Escherichia coli K-12 (taxid:83333)]

 Score = 118 (46.6 bits), Expect = 0.00025, P = 0.00025
 Identities = 62/242 (25%), Positives = 99/242 (40%)

Query:    91 VVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMF 150
             +V++S  I  T+ V+  +P   L +  + VD+ SVK  P    L  +  D  +L  HPMF
Sbjct:   145 MVIVSVPIHVTEQVIGKLP--PLPKDCILVDLASVKNGPLQAML--VAHDGPVLGLHPMF 200

Query:   151 GPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGS 210
             GP+S          +  +V +  D  + +    FL+     G R+  +S  +HD+  A  
Sbjct:   201 GPDSGS--------LAKQVVVWCDGRKPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFI 252

Query:   211 Q----FVTHTMGRVLERFGVESSPI---NTKGYETLLDLVDNTKGDSFDLYYGLFMYNKN 263
             Q    F T   G  L    V+   +   ++  Y   L +V         LY  + M ++ 
Sbjct:   253 QALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSER 312

Query:   264 SLEQLQRLEMAF-ESIK------QQLFGQMFRVYRKELFGS-AXXXXXXXRVRLLSATKE 315
             +L  ++R    F E+I+      +Q F   FR   +  FG  A       RV L  A   
Sbjct:   313 NLALIKRYYKRFGEAIELLEQGDKQAFIDSFRKV-EHWFGDYAQRFQSESRVLLRQANDN 371

Query:   316 TQ 317
              Q
Sbjct:   372 RQ 373

GO:0046417 "chorismate metabolic process" evidence=IEA

GO:0004665 "prephenate dehydrogenase (NADP+) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008977 "prephenate dehydrogenase activity" evidence=IEA;IDA

GO:0004106 "chorismate mutase activity" evidence=IEA;IDA

GO:0006571 "tyrosine biosynthetic process" evidence=IEA;IDA

GO:0009094 "L-phenylalanine biosynthetic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

SGD|S000000370 TYR1 "Prephenate dehydrogenase involved in tyrosine biosynthesis" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 118 (46.6 bits), Expect = 0.00034, P = 0.00034
 Identities = 64/280 (22%), Positives = 119/280 (42%)

Query:    28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-NAPFFADLND-LC 85
             K+T + I +IG G+ G   A  F      ++   R ++   ++++  +A F    N  L 
Sbjct:    11 KATKV-IGIIGLGDMGLLYANKFTDAGWGVICCDREEYYDELKEKYASAKFELVKNGHLV 69

Query:    86 ELHPDVVLLSTSILSTQSVLKSI-PFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDIL 144
                 D ++ S    +   ++ +  P  ++   T+     S K      F KYLP+D DI+
Sbjct:    70 SRQSDYIIYSVEASNISKIVATYGPSSKV--GTIVGGQTSCKLPEIEAFEKYLPKDCDII 127

Query:   145 CTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD-VFAKEGCRMVEMSCFDH 203
               H + GP   K + E  P +     I N   +     +F++ V A    + V ++  +H
Sbjct:   128 TVHSLHGP---KVNTEGQPLV-----IINHRSQYPESFEFVNSVMACLKSKQVYLTYEEH 179

Query:   204 DKYAAGSQFVTH----TMGRVLERFGVESSPINT-KGYETLLDLVDNTK----GDSFDLY 254
             DK  A +Q VTH    +MG    +  +    +   K Y  L ++  N       + + +Y
Sbjct:   180 DKITADTQAVTHAAFLSMGSAWAKIKIYPWTLGVNKWYGGLENVKVNISLRIYSNKWHVY 239

Query:   255 YGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKEL 294
              GL + N ++ +Q+    + + +   +LF  M     +EL
Sbjct:   240 AGLAITNPSAHQQI----LQYATSATELFSLMIDNKEQEL 275


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      335       328   0.00088  116 3  11 22  0.49    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  216 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.13u 0.10s 27.23t   Elapsed:  00:00:01
  Total cpu time:  27.13u 0.10s 27.23t   Elapsed:  00:00:01
  Start:  Fri May 10 01:17:01 2013   End:  Fri May 10 01:17:02 2013

GO:0004665 "prephenate dehydrogenase (NADP+) activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006571 "tyrosine biosynthetic process" evidence=IEA

GO:0006570 "tyrosine metabolic process" evidence=NAS

GO:0008977 "prephenate dehydrogenase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LMR3	TYRA2_ARATH	1, ., 3, ., 1, ., 7, 8	0.6852	0.9074	0.8491	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1.12	LOW CONFIDENCE prediction!
3rd Layer	1.3.1	0.963
3rd Layer	1.3.1.78	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	335
PLN02256	304	PLN02256, PLN02256, arogenate dehydrogenase	0.0
PLN02712	667	PLN02712, PLN02712, arogenate dehydrogenase	1e-156
PLN02712	667	PLN02712, PLN02712, arogenate dehydrogenase	1e-145
COG0287	279	COG0287, TyrA, Prephenate dehydrogenase [Amino aci	4e-27
PRK08655	437	PRK08655, PRK08655, prephenate dehydrogenase; Prov	4e-22
pfam01408	120	pfam01408, GFO_IDH_MocA, Oxidoreductase family, NA	2e-07
PRK06545	359	PRK06545, PRK06545, prephenate dehydrogenase; Vali	1e-06
pfam02153	258	pfam02153, PDH, Prephenate dehydrogenase	5e-06
pfam03807	93	pfam03807, F420_oxidored, NADP oxidoreductase coen	1e-05
PRK06444	197	PRK06444, PRK06444, prephenate dehydrogenase; Prov	3e-05
PRK11199	374	PRK11199, tyrA, bifunctional chorismate mutase/pre	6e-05
pfam01210	157	pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-	2e-04
PRK08507	275	PRK08507, PRK08507, prephenate dehydrogenase; Vali	2e-04
cd05266	251	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	0.002

>gnl|CDD|215144 PLN02256, PLN02256, arogenate dehydrogenase

 Score =  508 bits (1311), Expect = 0.0
 Identities = 194/294 (65%), Positives = 240/294 (81%), Gaps = 1/294 (0%)

Query: 7   IRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS 66
           +RAIDAAQPFDYES+L  +  KS  LKI ++GFGNFGQFLAK F +  HT+L  SRSD+S
Sbjct: 12  VRAIDAAQPFDYESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS 71

Query: 67  PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK 126
             +  +L   FF D +D CE HPDVVLL TSILST++VL+S+P QRLKRSTLFVDVLSVK
Sbjct: 72  -DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVK 130

Query: 127 EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186
           EFP+NL L+ LP++FDILCTHPMFGPES K  W  LPF+YDKVRIG++ ER  R ++FLD
Sbjct: 131 EFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLD 190

Query: 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNT 246
           +F +EGCRMVEMSC +HD+YAAGSQF+THT+GR+L +  +ES+PINTKGYETLL LV+NT
Sbjct: 191 IFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKMELESTPINTKGYETLLRLVENT 250

Query: 247 KGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEE 300
             DSFDLYYGLFMYN N+ E+L+RLE+AF+S+K+QLFG++  V RK+LF  +  
Sbjct: 251 SSDSFDLYYGLFMYNPNATEELERLELAFDSVKKQLFGRLHDVLRKQLFEGSPL 304

Length = 304

>gnl|CDD|215382 PLN02712, PLN02712, arogenate dehydrogenase

 Score =  453 bits (1166), Expect = e-156
 Identities = 200/324 (61%), Positives = 257/324 (79%), Gaps = 3/324 (0%)

Query: 7   IRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS 66
           +R    AQ ++Y +Q+       + LKIA++GFGNFGQFLAK   +  HT+L +SRSD+S
Sbjct: 345 MRFQGVAQKYEYNAQVSGCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS 404

Query: 67  PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK 126
               Q+L   +F+D +DLCE HP+V+LL TSILST+ VLKS+PFQRLKRSTLFVDVLSVK
Sbjct: 405 DEA-QKLGVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVK 463

Query: 127 EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD 186
           EFPRNLFL++LPQDFDILCTHPMFGPES K+ W NL F++DKVRIG+D+ R+ R D FLD
Sbjct: 464 EFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLD 523

Query: 187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNT 246
           +FA+EGCRMVEMSC +HD +AAGSQF+THTMGR+LE+ G+ES+PINTKGYETLL+LV+NT
Sbjct: 524 IFAREGCRMVEMSCAEHDWHAAGSQFITHTMGRLLEKLGLESTPINTKGYETLLNLVENT 583

Query: 247 KGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEER 306
            GDSFDLYYGLFMYN N++EQL+RL++AFES+K+QLFG++  V RK+LF S+E+ +    
Sbjct: 584 AGDSFDLYYGLFMYNVNAMEQLERLDLAFESLKKQLFGRLHGVLRKQLFKSSEKSQVLRE 643

Query: 307 VRLLSATKETQNGAPVEQASVDSE 330
             L+S  K +Q  A +  +    +
Sbjct: 644 ESLVS--KVSQKTAALLTSLDSVQ 665

Length = 667

>gnl|CDD|215382 PLN02712, PLN02712, arogenate dehydrogenase

 Score =  425 bits (1094), Expect = e-145
 Identities = 192/307 (62%), Positives = 240/307 (78%), Gaps = 6/307 (1%)

Query: 29  STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELH 88
           +T LKIA+IGFGN+GQFLAK      HT+L HSRSDHS A R  L   FF D +DLCE H
Sbjct: 50  TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARS-LGVSFFLDPHDLCERH 108

Query: 89  PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
           PDV+LL TSI+ST++VLKS+P QRLKR+TLFVDVLSVKEF +NL L YLP+DFDI+C+HP
Sbjct: 109 PDVILLCTSIISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHP 168

Query: 149 MFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAA 208
           MFGP+SAK  W+ L F+Y+KVRIGN+E R+ R   FL+VF +EGC+MVEMSC +HDKYAA
Sbjct: 169 MFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAA 228

Query: 209 GSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQL 268
            SQF+THT+GRVLE   +ES+PINTKGYE+LLDLV+NT GDSFDLYYGLFMYNKNSLE L
Sbjct: 229 ESQFITHTVGRVLEMLKLESTPINTKGYESLLDLVENTCGDSFDLYYGLFMYNKNSLEML 288

Query: 269 QRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEERVRLLSATKETQNGAPVEQASVD 328
           +RL++AFE++++QLFG++  V RK+LFG+     EE++V +     E         +S+D
Sbjct: 289 ERLDLAFEALRKQLFGRLHGVVRKQLFGN-----EEKKVHVQPNHAENHTYGAAFLSSLD 343

Query: 329 SERLEGS 335
             R +G 
Sbjct: 344 MMRFQGV 350

Length = 667

>gnl|CDD|223364 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism]

 Score =  107 bits (269), Expect = 4e-27
 Identities = 71/298 (23%), Positives = 118/298 (39%), Gaps = 39/298 (13%)

Query: 33  KIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL--H 88
           K+ ++G G  G  LA+A         ++   RS  +     +L       +  L E    
Sbjct: 5   KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAE 64

Query: 89  PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
            D+V+++  I +T+ VLK +    LK+  +  DV SVK        KYLP D   +  HP
Sbjct: 65  ADLVIVAVPIEATEEVLKELAP-HLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP 123

Query: 149 MFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAA 208
           MFGPE+    +EN   +      G ++E ++ V +  +     G R+VEM   +HD+  A
Sbjct: 124 MFGPEADAGLFENAVVVLTPSE-GTEKEWVEEVKRLWE---ALGARLVEMDAEEHDRVMA 179

Query: 209 GSQFVTH----TMGRVLERFGVESSPIN---TKGYETLLDLVDNTK--GDSFDLYYGLFM 259
               + H     +   L +   E   +    + G+       D T+      ++Y  + +
Sbjct: 180 AVSHLPHAAALALANALAKLETEELLVLKLASGGFR------DITRIASSDPEMYADIQL 233

Query: 260 YNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEERVRLLSATKETQ 317
            NK +L     LE   E   + L          EL    E  + E    L    K+ +
Sbjct: 234 SNKEAL-----LEA-IERFAKSL---------DELKELIENGDAEALADLFEEAKKIR 276

Length = 279

>gnl|CDD|236326 PRK08655, PRK08655, prephenate dehydrogenase; Provisional

 Score = 96.2 bits (240), Expect = 4e-22
 Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 63/278 (22%)

Query: 32  LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHP 89
           +KI++IG  G  G++ A+        ++V  R       V ++L   +  D  D  +   
Sbjct: 1   MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKD-A 59

Query: 90  DVVLLSTSILSTQSVLKSI-PFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
           D+V++S  I  T+ V+K + P   +K  +L +DV SVKE P     +Y P+  +IL THP
Sbjct: 60  DIVIISVPINVTEDVIKEVAPH--VKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHP 117

Query: 149 MFGP---------------ESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGC 193
           MFGP               E   + W      +DKV+             FL+   KEG 
Sbjct: 118 MFGPRTPSLKGQVVILTPTEKRSNPW------FDKVK------------NFLE---KEGA 156

Query: 194 RMVEMSCFDHDKYAAGSQFVTH----TMGRVLERFGVE-------SSPINTKGYETLLDL 242
           R++  S  +HD+  +  Q +TH    ++   L+R GV+       +SPI    YE ++D+
Sbjct: 157 RVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASPI----YELMIDI 212

Query: 243 VDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQ 280
           +    G +  LY  + M N     Q+  +   F  IK+
Sbjct: 213 IGRILGQNPYLYASIQMNNP----QIPEIHETF--IKE 244

Length = 437

>gnl|CDD|201778 pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding Rossmann fold

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 32 LKIAVIGFGNFGQFLAKAFARHHHTL----LVHSRSDHSPAVRQQLNAPFFADLNDLCEL 87
          L++ ++G G  G+   +A            ++      + AV +    P ++DL +L   
Sbjct: 1  LRVGIVGAGKIGRRHLRALNESQDGAELVGILDPDPARAEAVAESFGVPAYSDLEELLAD 60

Query: 88 -HPDVVLLST 96
             D V ++T
Sbjct: 61 PDIDAVSVAT 70

This family of enzymes utilise NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot. Length = 120

>gnl|CDD|235824 PRK06545, PRK06545, prephenate dehydrogenase; Validated

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 9/133 (6%)

Query: 34  IAVIGFGNFGQFLAKAFARHHHTLLV--HSRSDHSPAVRQQLNAPFFADLNDLCELH--- 88
           + ++G G  G  LA A       + +  +  S    A           +L    +     
Sbjct: 3   VLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVI--DELAADLQRAAAE 60

Query: 89  PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
            D+++L+  + +T ++L  +    LK   +  DV SVK          L      +  HP
Sbjct: 61  ADLIVLAVPVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP 120

Query: 149 MFGPESAKSSWEN 161
           M G  S KS    
Sbjct: 121 MAG--SHKSGVAA 131

Length = 359

>gnl|CDD|216906 pfam02153, PDH, Prephenate dehydrogenase

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 13/133 (9%)

Query: 90  DVVLLSTSILSTQSVLKSI-PFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
           D+V+L+  I  T  VLK + P   LK   L  DV SVK        + L      +  HP
Sbjct: 47  DIVVLAVPIEVTLEVLKELAPH--LKEGALITDVGSVKVKIVEDAEQLLCDGVGFIGGHP 104

Query: 149 MFGPE------SAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFD 202
           M G E      +  + +E  P +       + E     +    ++    G +++ MS  +
Sbjct: 105 MAGTEKSGPDAARANLFEGAPVILTPTEKTDTE----ALALVRELLEGLGAKVILMSPEE 160

Query: 203 HDKYAAGSQFVTH 215
           HD+  A    + H
Sbjct: 161 HDRVVAVVSHLPH 173

Members of this family are prephenate dehydrogenases EC:1.3.1.12 involved in tyrosine biosynthesis. Length = 258

>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 6/94 (6%)

Query: 33  KIAVIGFGNFGQFLAKAFARH-HHTLLVHSRSDHSPA-VRQQLNA-PFFADLNDLCELHP 89
           KI +IG GN G+ LA+  A   H  ++ +SR+    A + ++L          +  E   
Sbjct: 1   KIGIIGAGNMGEALARGLAAAGHEVVIANSRNPEKAAALAEELGVKATAVSNEEAVE-EA 59

Query: 90  DVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVL 123
           DVV L+        VL  +    LK   + + + 
Sbjct: 60  DVVFLAVKPEDAPEVLAELA-DLLKGKLV-ISIT 91

Length = 93

>gnl|CDD|102381 PRK06444, PRK06444, prephenate dehydrogenase; Provisional

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 25/172 (14%)

Query: 90  DVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPM 149
           D   LS  I +  + ++            FV++ SVK      F KY  +   I+  HP+
Sbjct: 33  DHAFLSVPIDAALNYIE-------SYDNNFVEISSVK----WPFKKYSGK---IVSIHPL 78

Query: 150 FGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG 209
           FGP S              V   ND  R   +++  ++F   G   VEM+  +HD   + 
Sbjct: 79  FGPMSYNDGVHR------TVIFINDISRDNYLNEINEMF--RGYHFVEMTADEHDLLMSE 130

Query: 210 SQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYN 261
                + +  +L+      S I T  ++ LL++ +  + ++++++    +YN
Sbjct: 131 IMVKPYIISMILKDI---KSDIKTGSFDKLLEVSEIKEKENWEVFNDTIIYN 179

Length = 197

>gnl|CDD|183035 PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 67/248 (27%), Positives = 98/248 (39%), Gaps = 48/248 (19%)

Query: 90  DVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL--PQDFDILCTH 147
            +V++S  I  T+ V+  +P   L    + VD+ SVK  P    L     P    +L  H
Sbjct: 144 GMVIVSVPIHLTEEVIARLP--PLPEDCILVDLTSVKNAPLQAMLAAHSGP----VLGLH 197

Query: 148 PMFGPESAKSSWENLPFMYDKVRI---GNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHD 204
           PMFGP+           +  +V +   G   E  +     L+     G R+  +S  +HD
Sbjct: 198 PMFGPDVGS--------LAKQVVVVCDGRQPEAYQW---LLEQIQVWGARLHRISAVEHD 246

Query: 205 KYAAGSQ----FVTHTMGRVLERFGVE-------SSPINTKGYETLLDLVDNTKGDSFDL 253
           +  A  Q    F T   G  L +  V+       SSPI    Y   L +V         L
Sbjct: 247 QNMAFIQALRHFATFAYGLHLAKENVDLEQLLALSSPI----YRLELAMVGRLFAQDPQL 302

Query: 254 YYGLFMYNKNSLEQL----QRLEMAFESIKQ---QLFGQMFR-VYRKELFGS-AEEEEEE 304
           Y  + M +  +L  +    QR   A E ++Q   Q F   FR V  +  FG  AE+  +E
Sbjct: 303 YADIIMSSPENLALIKRYYQRFGEALELLEQGDKQAFIDSFRKV--EHWFGDYAEQFLKE 360

Query: 305 ERVRLLSA 312
            R  L  A
Sbjct: 361 SRSLLQQA 368

Length = 374

>gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN 74
          KIAV+G G++G  LAK  AR+ H + +         + +++N
Sbjct: 1  KIAVLGAGSWGTALAKVLARNGHEVRL---WGRDEELIEEIN 39

NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Length = 157

>gnl|CDD|181452 PRK08507, PRK08507, prephenate dehydrogenase; Validated

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 34/199 (17%)

Query: 32  LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFAD----LNDLCEL 87
           +KI +IG G  G  L  A         V    DH+    ++       D      +L   
Sbjct: 1   MKIGIIGLGLMGGSLGLALKEKGLISKV-YGYDHNELHLKKALELGLVDEIVSFEEL--K 57

Query: 88  HPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTH 147
             DV+ L+  + +   +L  +    +K +T  +D+ S K        K++ ++F  +  H
Sbjct: 58  KCDVIFLAIPVDAIIEILPKL--LDIKENTTIIDLGSTKAKIIESVPKHIRKNF--IAAH 113

Query: 148 PM-----FGPESA-KSSWENLPFMYDKVRI-----GNDEERIKRVDKFLDVFAKEGCRMV 196
           PM      GP++A K  +E       KV +      + E+  +R     ++F+  G R+V
Sbjct: 114 PMAGTENSGPKAAIKGLYEG------KVVVLCDVEKSGEKHQERA---KEIFSGLGMRIV 164

Query: 197 EMSCFDHDKYAAGSQFVTH 215
            M   +HD +AA   +++H
Sbjct: 165 YMDAKEHDLHAA---YISH 180

Length = 275

>gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFFADLNDLCELHP-DV 91
          + ++G G  GQ LA+        +   +RS     A R     P  ADL     L   D 
Sbjct: 1  VLILGCGYLGQRLARQLLAQGWQVTGTTRSPEKLAADRPAGVTPLAADLTQPGLLADVDH 60

Query: 92 VLLST 96
          +++S 
Sbjct: 61 LVISL 65

Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
PLN02256	304	arogenate dehydrogenase	100.0
PLN02712	667	arogenate dehydrogenase	100.0
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	100.0
PLN02712	667	arogenate dehydrogenase	100.0
PRK07417	279	arogenate dehydrogenase; Reviewed	100.0
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	100.0
PRK08818	370	prephenate dehydrogenase; Provisional	100.0
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	100.0
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	100.0
PRK08507	275	prephenate dehydrogenase; Validated	100.0
PRK08655	437	prephenate dehydrogenase; Provisional	100.0
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	100.0
PRK06545	359	prephenate dehydrogenase; Validated	100.0
PRK06444	197	prephenate dehydrogenase; Provisional	100.0
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	100.0
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	100.0
PLN02688	266	pyrroline-5-carboxylate reductase	99.85
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.85
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.83
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.82
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.82
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.8
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.79
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.77
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.77
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.76
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.76
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.75
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.74
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.74
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.73
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.73
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.73
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.72
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.72
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.71
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.71
PRK07680	273	late competence protein ComER; Validated	99.71
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.7
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.7
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.68
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.68
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.67
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.67
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.66
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.65
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.65
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.64
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.62
PLN02858	1378	fructose-bisphosphate aldolase	99.59
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.59
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.59
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.58
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.58
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.58
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.57
PLN02858	1378	fructose-bisphosphate aldolase	99.57
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.55
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.55
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.55
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.54
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.52
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.46
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.46
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.45
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.43
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.43
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.43
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.42
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.41
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	99.4
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.39
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.39
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.37
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.37
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.36
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.36
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.35
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.35
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.34
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.33
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.33
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.33
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	99.31
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.3
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.3
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.3
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.29
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.28
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.27
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.21
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	99.2
PRK07574	385	formate dehydrogenase; Provisional	99.16
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.15
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.14
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.13
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	99.11
PLN03139	386	formate dehydrogenase; Provisional	99.11
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.08
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.07
PRK13243	333	glyoxylate reductase; Reviewed	99.05
PRK12480	330	D-lactate dehydrogenase; Provisional	99.03
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	99.03
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	98.99
PRK06436	303	glycerate dehydrogenase; Provisional	98.97
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.97
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.96
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	98.95
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.93
PRK08605	332	D-lactate dehydrogenase; Validated	98.93
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.92
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.9
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.87
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	98.86
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.84
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	98.84
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	98.84
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	98.83
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.79
PLN02928	347	oxidoreductase family protein	98.78
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	98.76
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.75
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	98.75
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.74
PRK05225	487	ketol-acid reductoisomerase; Validated	98.73
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.72
PRK06487	317	glycerate dehydrogenase; Provisional	98.67
PRK06932	314	glycerate dehydrogenase; Provisional	98.65
PLN02306	386	hydroxypyruvate reductase	98.65
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.65
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.65
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	98.63
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	98.53
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.48
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.45
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	98.4
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.38
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.37
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.35
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.34
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.33
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.33
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.31
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.29
PRK06223	307	malate dehydrogenase; Reviewed	98.28
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	98.28
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.27
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	98.27
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.27
PRK04148	134	hypothetical protein; Provisional	98.25
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.22
PLN02494	477	adenosylhomocysteinase	98.22
PTZ00082	321	L-lactate dehydrogenase; Provisional	98.21
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	98.2
PTZ00117	319	malate dehydrogenase; Provisional	98.19
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.18
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.17
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.15
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.15
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.14
PRK06141	314	ornithine cyclodeaminase; Validated	98.09
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.08
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.08
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.07
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	98.04
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	98.02
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.01
PRK08300	302	acetaldehyde dehydrogenase; Validated	98.01
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.0
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.98
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.97
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.96
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	97.95
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.94
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.93
PLN00203	519	glutamyl-tRNA reductase	97.92
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	97.91
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.89
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	97.88
PRK07340	304	ornithine cyclodeaminase; Validated	97.86
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.85
COG5495	289	Uncharacterized conserved protein [Function unknow	97.85
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.85
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	97.82
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.81
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.8
PRK08618	325	ornithine cyclodeaminase; Validated	97.8
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.8
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.79
PRK06046	326	alanine dehydrogenase; Validated	97.79
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.78
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.78
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.77
PRK09496	453	trkA potassium transporter peripheral membrane com	97.75
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.75
COG0673	342	MviM Predicted dehydrogenases and related proteins	97.75
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.74
TIGR00036	266	dapB dihydrodipicolinate reductase.	97.71
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.71
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.7
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.7
PRK08291	330	ectoine utilization protein EutC; Validated	97.67
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.65
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.63
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.57
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.57
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.56
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.55
COG2910	211	Putative NADH-flavin reductase [General function p	97.54
PRK07589	346	ornithine cyclodeaminase; Validated	97.53
PRK06823	315	ornithine cyclodeaminase; Validated	97.53
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.52
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.51
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.5
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.5
PLN02602	350	lactate dehydrogenase	97.49
PRK11579	346	putative oxidoreductase; Provisional	97.49
PRK06407	301	ornithine cyclodeaminase; Provisional	97.47
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.44
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.42
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.41
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.41
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.39
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.39
PRK15076	431	alpha-galactosidase; Provisional	97.39
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.38
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.38
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	97.37
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.37
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.37
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.37
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.36
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.36
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.36
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.35
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.32
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	97.3
PRK10206	344	putative oxidoreductase; Provisional	97.29
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.27
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.27
PLN02383	344	aspartate semialdehyde dehydrogenase	97.26
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.25
PRK10669	558	putative cation:proton antiport protein; Provision	97.25
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.25
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.24
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.24
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	97.22
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.22
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.2
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.19
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.19
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.19
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.18
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.16
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.16
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.15
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.13
PRK05442	326	malate dehydrogenase; Provisional	97.12
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.1
COG2344	211	AT-rich DNA-binding protein [General function pred	97.1
PRK09496	453	trkA potassium transporter peripheral membrane com	97.09
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.08
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.08
PRK14982	340	acyl-ACP reductase; Provisional	97.07
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	97.07
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.07
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.06
PRK06199	379	ornithine cyclodeaminase; Validated	97.06
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	97.04
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.03
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.03
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.03
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.01
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	96.99
CHL00194	317	ycf39 Ycf39; Provisional	96.98
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	96.98
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.98
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.97
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	96.96
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.95
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.95
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.94
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	96.93
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	96.93
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.92
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.92
PTZ00325	321	malate dehydrogenase; Provisional	96.91
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.91
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.9
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.9
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	96.89
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.87
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.85
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.85
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	96.83
PRK06349	426	homoserine dehydrogenase; Provisional	96.82
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.82
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.81
COG4074	343	Mth H2-forming N5,N10-methylenetetrahydromethanopt	96.81
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.8
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	96.79
PLN00106	323	malate dehydrogenase	96.79
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.79
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.78
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.77
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.77
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.76
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.76
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.75
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.75
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	96.75
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	96.74
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.73
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	96.72
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.72
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.72
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.71
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.7
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	96.7
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	96.7
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.68
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	96.67
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.65
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	96.64
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.64
PRK05086	312	malate dehydrogenase; Provisional	96.6
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	96.58
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.57
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.57
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.56
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.54
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.5
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.49
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.48
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.48
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.46
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.45
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.41
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.39
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.36
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.36
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.35
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.33
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.33
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	96.33
PRK06153	393	hypothetical protein; Provisional	96.33
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	96.31
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.3
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	96.29
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.27
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.26
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.25
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.25
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.24
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.23
PRK08223	287	hypothetical protein; Validated	96.22
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.21
PRK08328	231	hypothetical protein; Provisional	96.2
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	96.19
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.19
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.17
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.14
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.12
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	96.1
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	96.09
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.99
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	95.98
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.96
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	95.91
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.9
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	95.87
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	95.85
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.85
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.85
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	95.84
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.84
PLN02427	386	UDP-apiose/xylose synthase	95.8
PRK07236	386	hypothetical protein; Provisional	95.8
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	95.78
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.78
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.77
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	95.77
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.74
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.7
PLN00198	338	anthocyanidin reductase; Provisional	95.69
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	95.67
COG4408	431	Uncharacterized protein conserved in bacteria [Fun	95.65
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.65
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	95.64
PRK06270	341	homoserine dehydrogenase; Provisional	95.63
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.62
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.57
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.56
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.55
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.54
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	95.54
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	95.51
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.5
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.49
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.49
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.48
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	95.46
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.46
PLN02695	370	GDP-D-mannose-3',5'-epimerase	95.44
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.43
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.42
PLN03209	576	translocon at the inner envelope of chloroplast su	95.39
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	95.39
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.38
PRK08163	396	salicylate hydroxylase; Provisional	95.37
PRK06753	373	hypothetical protein; Provisional	95.37
PRK12779	944	putative bifunctional glutamate synthase subunit b	95.37
PRK14031	444	glutamate dehydrogenase; Provisional	95.33
PRK06182	273	short chain dehydrogenase; Validated	95.32
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	95.32
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.29
PLN02214	342	cinnamoyl-CoA reductase	95.28
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.28
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	95.28
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	95.23
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.23
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	95.22
PRK08374	336	homoserine dehydrogenase; Provisional	95.22
PRK06392	326	homoserine dehydrogenase; Provisional	95.14
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	95.13
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	95.12
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.11
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.11
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	95.09
PLN02650	351	dihydroflavonol-4-reductase	95.09
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	95.09
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.06
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	95.06
PRK05868	372	hypothetical protein; Validated	95.04
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	95.02
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	95.02
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	95.01
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	95.01
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	94.99
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	94.97
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	94.96
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	94.92
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	94.91
PRK07411	390	hypothetical protein; Validated	94.9
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.89
PRK10537	393	voltage-gated potassium channel; Provisional	94.86
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	94.82
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	94.81
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.81
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	94.81
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	94.8
PRK09414	445	glutamate dehydrogenase; Provisional	94.8
PLN02477	410	glutamate dehydrogenase	94.78
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.76
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.75
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	94.75
PRK07538	413	hypothetical protein; Provisional	94.73
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	94.73
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	94.73
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	94.72
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	94.71
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	94.7
PRK06847	375	hypothetical protein; Provisional	94.7
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	94.69
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	94.69
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	94.69
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	94.67
PRK05866	293	short chain dehydrogenase; Provisional	94.66
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.63
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.62
PRK07588	391	hypothetical protein; Provisional	94.59
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	94.59
PRK08013	400	oxidoreductase; Provisional	94.58
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	94.52
PLN02166	436	dTDP-glucose 4,6-dehydratase	94.47
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	94.46
PRK13984	604	putative oxidoreductase; Provisional	94.44
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.42
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.42
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	94.39
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	94.39
PLN02206	442	UDP-glucuronate decarboxylase	94.39
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.39
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	94.37
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	94.36
PRK06057	255	short chain dehydrogenase; Provisional	94.32
PRK10637	457	cysG siroheme synthase; Provisional	94.3
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	94.25
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	94.25
PLN02686	367	cinnamoyl-CoA reductase	94.2
PRK07045	388	putative monooxygenase; Reviewed	94.19
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.17
PLN02948	577	phosphoribosylaminoimidazole carboxylase	94.17
PRK08219	227	short chain dehydrogenase; Provisional	94.17
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	94.15
PRK06185	407	hypothetical protein; Provisional	94.15

>PLN02256 arogenate dehydrogenase

Probab=100.00  E-value=3.8e-56  Score=418.00  Aligned_cols=294  Identities=66%  Similarity=1.125  Sum_probs=262.2

Q ss_pred             hhhHhhhhhcCCCccccchhhcccCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhh
Q 044593            4 RHVIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLND   83 (335)
Q Consensus         4 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~   83 (335)
                      -+..|+++++|+|||+++++.|+.++..++|+|||+|.||++++..|.+.|++|++||+++. .+.+.+.|+...++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e   87 (304)
T PLN02256          9 SLRVRAIDAAQPFDYESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDD   87 (304)
T ss_pred             CcccccccccCCCChHhHHhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHH
Confidence            35689999999999999999999999999999999999999999999999999999999974 35566778877677777


Q ss_pred             HhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593           84 LCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP  163 (335)
Q Consensus        84 ~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~  163 (335)
                      ++..++|+||+|||+..+.++++++..+.++++++|+|++|+|+.+++.+.+.++.+.+||++|||+|++.+...+.+.+
T Consensus        88 ~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~  167 (304)
T PLN02256         88 FCEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLP  167 (304)
T ss_pred             HhhCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCe
Confidence            64136999999999999999999983256889999999999999999999998887778999999999998766678888


Q ss_pred             ceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCcchhhHHHHH
Q 044593          164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLV  243 (335)
Q Consensus       164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~~~~~~~~gf~~~~rl~  243 (335)
                      +++++.++..+..+++.++.++++|+.+|+++++|++++||+++|++|||||++|.+|++...+..+++++||||+||++
T Consensus       168 ~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L~~~~~~~~~~~~~gfrd~tria  247 (304)
T PLN02256        168 FVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKMELESTPINTKGYETLLRLV  247 (304)
T ss_pred             EEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHHHHcCCcccccccccHHHHHHHH
Confidence            88876543213345567889999999999999999999999999999999999999999876555689999999999999


Q ss_pred             HHhhCCChHhHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          244 DNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       244 ~~ia~~~~~lw~~I~~~N~~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      +|+.++||.||+|||..|++++++|++|++.|+++++.|+...++.||++||+.+
T Consensus       248 ~r~~~~~p~lw~dI~~~N~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~  302 (304)
T PLN02256        248 ENTSSDSFDLYYGLFMYNPNATEELERLELAFDSVKKQLFGRLHDVLRKQLFEGS  302 (304)
T ss_pred             HhhcCCCHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccC
Confidence            9999999999999999999999999999999999999999999999999999876

>PLN02712 arogenate dehydrogenase

Probab=100.00  E-value=2.1e-49  Score=406.06  Aligned_cols=293  Identities=67%  Similarity=1.116  Sum_probs=261.6

Q ss_pred             hHhhhhhcCCCccccchhhcccCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHh
Q 044593            6 VIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLC   85 (335)
Q Consensus         6 ~~r~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~   85 (335)
                      .+|.++++|+|||+.......+....|||+|||+|+||+++|++|++.|++|++||++... +.+.+.|+....+.++++
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~  422 (667)
T PLN02712        344 MMRFQGVAQKYEYNAQVSGCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLC  422 (667)
T ss_pred             hhhhhcccCCCCccchhhhccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHH
Confidence            4899999999999999888878888999999999999999999999999999999999654 446678887667777765


Q ss_pred             hcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcce
Q 044593           86 ELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFM  165 (335)
Q Consensus        86 ~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i  165 (335)
                      ..++|+||+|||+..+.+++.++....++++++|+|++|+|..+.+.+.+.++.+.+|+++|||+|++.+..+|.+.+++
T Consensus       423 ~~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~l  502 (667)
T PLN02712        423 EEHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFV  502 (667)
T ss_pred             hcCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhh
Confidence            12589999999999999999988523578999999999999989999998888778899999999999865566667777


Q ss_pred             ecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCcchhhHHHHHHH
Q 044593          166 YDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDN  245 (335)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~~~~~~~~gf~~~~rl~~~  245 (335)
                      |++.+++++....+.++.+.++|+.+|+++++|++++||+++|++||+||+++.+|.+.+.+..+++++||++++.|++|
T Consensus       503 f~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla~~L~~~~~~~~~~~~~gfr~l~~Li~R  582 (667)
T PLN02712        503 FDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMGRLLEKLGLESTPINTKGYETLLNLVEN  582 (667)
T ss_pred             ccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccHHHHHHHHHHHh
Confidence            77765566655667788889999999999999999999999999999999999999988876678899999999999999


Q ss_pred             hhCCChHhHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCch
Q 044593          246 TKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAE  299 (335)
Q Consensus       246 ia~~~~~lw~~I~~~N~~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~  299 (335)
                      ++++||+||+|||+.||++++.|++|...|+.+++.|+.+.+..+|+++|+.++
T Consensus       583 ia~~~p~l~~dI~~~N~~a~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~~  636 (667)
T PLN02712        583 TAGDSFDLYYGLFMYNVNAMEQLERLDLAFESLKKQLFGRLHGVLRKQLFKSSE  636 (667)
T ss_pred             hcCCCHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence            999999999999999999999999999999999999999999999999999975

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-48  Score=358.99  Aligned_cols=258  Identities=24%  Similarity=0.380  Sum_probs=221.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEE--cCCCCcHHHHHhCCCcee--cCh-hhHhhcCCCEEEEecCchhHHHH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVH--SRSDHSPAVRQQLNAPFF--ADL-NDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~--dr~~~~~~~a~~~g~~~~--~~~-~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      ..++|+|+|+|+||+|+|+.|++.|+.|.++  |++....+.+.++|+...  .+. .+.. .++|+||+|||...+.++
T Consensus         2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~-~~aD~VivavPi~~~~~~   80 (279)
T COG0287           2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAA-AEADLVIVAVPIEATEEV   80 (279)
T ss_pred             CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhc-ccCCEEEEeccHHHHHHH
Confidence            4689999999999999999999999977555  555556676777888653  232 3344 679999999999999999


Q ss_pred             HhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHH
Q 044593          105 LKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKF  184 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v  184 (335)
                      ++++. +.+++|++|+|++|+|..+++.+++.++.+.+|+++||||||+...+.|++..+++||    .+..+.+.++++
T Consensus        81 l~~l~-~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp----~~~~~~~~~~~~  155 (279)
T COG0287          81 LKELA-PHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTP----SEGTEKEWVEEV  155 (279)
T ss_pred             HHHhc-ccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcC----CCCCCHHHHHHH
Confidence            99996 6899999999999999999999999987655899999999997334678888888875    333346788999


Q ss_pred             HHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCC-------CCCCCCcchhhHHHHHHHhhCCChHhHHHH
Q 044593          185 LDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVE-------SSPINTKGYETLLDLVDNTKGDSFDLYYGL  257 (335)
Q Consensus       185 ~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~-------~~~~~~~gf~~~~rl~~~ia~~~~~lw~~I  257 (335)
                      .++|+.+|+++++|++++||++||++|||||+++.+|+....+       ...+++++||+++|+    +++||.||+||
T Consensus       156 ~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~~frd~tRi----a~~~P~m~~dI  231 (279)
T COG0287         156 KRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASGGFRDITRI----ASSDPEMYADI  231 (279)
T ss_pred             HHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhccccchhhHHHH----HcCChHHHHHH
Confidence            9999999999999999999999999999999999998754322       146889999999998    89999999999


Q ss_pred             HhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          258 FMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       258 ~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      +.+|+++ ++.+++|.+.|+++++.++++|.+.+.+ +|.++
T Consensus       232 ~~~N~~~~l~~i~~~~~~l~~l~~~i~~~d~~~l~~-~~~~a  272 (279)
T COG0287         232 QLSNKEALLEAIERFAKSLDELKELIENGDAEALAD-LFEEA  272 (279)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH-HHHHH
Confidence            9999995 7999999999999999999999998877 66554

>PLN02712 arogenate dehydrogenase

Probab=100.00  E-value=1.8e-45  Score=376.98  Aligned_cols=269  Identities=68%  Similarity=1.164  Sum_probs=238.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      ..|+|+|||+|+||+++|..|++.|++|++||++... +.+.+.|+....+..+++..++|+||+|||+..+.+++.++.
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~  129 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLP  129 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhh
Confidence            4589999999999999999999999999999998543 457778887777777754246999999999999999999984


Q ss_pred             ccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHH
Q 044593          110 FQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFA  189 (335)
Q Consensus       110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~  189 (335)
                      .+.++++++|+|++|+|..+.+.+.+.++.+..|+++|||||++....+|.+..+++++.+++.+....+.++++.++|+
T Consensus       130 ~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  209 (667)
T PLN02712        130 LQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFE  209 (667)
T ss_pred             hhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHH
Confidence            24688999999999999999999999888778899999999999655567888888876444444444556788889999


Q ss_pred             hcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCcchhhHHHHHHHhhCCChHhHHHHHhhCHhHHHHHH
Q 044593          190 KEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQ  269 (335)
Q Consensus       190 ~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~~~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N~~~~~~l~  269 (335)
                      .+|++++.|++++||+++|++|||||++|++|.....++.++.+++|+.+++++.|++++||+||+|||++||+.++.|+
T Consensus       210 ~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~~~~~~~~~~~~~~~l~l~~Ria~~~p~L~~dI~~~N~~~~~~l~  289 (667)
T PLN02712        210 REGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLKLESTPINTKGYESLLDLVENTCGDSFDLYYGLFMYNKNSLEMLE  289 (667)
T ss_pred             HcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccHHHHHHHHHHHhcCCHHHHHHHHHhCHHHHHHHH
Confidence            99999999999999999999999999999999887777778889999999999999999999999999999996689999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhccCch
Q 044593          270 RLEMAFESIKQQLFGQMFRVYRKELFGSAE  299 (335)
Q Consensus       270 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~  299 (335)
                      +|++.|+++++.|+.+.++.+|+++|+.++
T Consensus       290 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~  319 (667)
T PLN02712        290 RLDLAFEALRKQLFGRLHGVVRKQLFGNEE  319 (667)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence            999999999999999999999999999975

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=100.00  E-value=9.3e-45  Score=338.20  Aligned_cols=253  Identities=17%  Similarity=0.216  Sum_probs=213.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-ecChhhHhhcCCCEEEEecCchhHHHHHhhccc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-FADLNDLCELHPDVVLLSTSILSTQSVLKSIPF  110 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~  110 (335)
                      |||+|||+|+||+++|..|+++|++|++||++++..+.+.+.|... ..+..+.+ .++|+||+|+|+..+.++++++. 
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~-~~aDlVilavp~~~~~~~~~~l~-   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLL-KDCDLVILALPIGLLLPPSEQLI-   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHh-cCCCEEEEcCCHHHHHHHHHHHH-
Confidence            5899999999999999999999999999999988877777777632 22222445 78999999999999999999985 


Q ss_pred             cccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc------ccccCCCcceecccccCCChhHHHHHHHH
Q 044593          111 QRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGNDEERIKRVDKF  184 (335)
Q Consensus       111 ~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~~~~~~~~~~v  184 (335)
                      +.++++++|+|++|+|..+.+.+.+..+   +|+++|||+|++..      ...|.|.+++++|    .+..+++.++.+
T Consensus        79 ~~l~~~~ii~d~~Svk~~~~~~~~~~~~---~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p----~~~~~~~~~~~v  151 (279)
T PRK07417         79 PALPPEAIVTDVGSVKAPIVEAWEKLHP---RFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTP----TENTDLNALAIV  151 (279)
T ss_pred             HhCCCCcEEEeCcchHHHHHHHHHHhhC---CceeeCCcCCCCcchHHHhhHHHhCCCcEEEcc----CCCCCHHHHHHH
Confidence            6788999999999999988877765432   59999999999853      1246777777764    344456778999


Q ss_pred             HHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCC---C-C-----CCCCCcchhhHHHHHHHhhCCChHhHH
Q 044593          185 LDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGV---E-S-----SPINTKGYETLLDLVDNTKGDSFDLYY  255 (335)
Q Consensus       185 ~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~---~-~-----~~~~~~gf~~~~rl~~~ia~~~~~lw~  255 (335)
                      +++|+.+|++++++++++||+++|++||+||+++.+|++...   + .     ..++++||||+||+    +++||+||+
T Consensus       152 ~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~~gfrd~tRi----a~~~p~~w~  227 (279)
T PRK07417        152 EELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLASSGFADTSRV----GGGNPELGV  227 (279)
T ss_pred             HHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhccCcccccccc----cCCChHHHH
Confidence            999999999999999999999999999999999988865321   1 1     26889999999998    899999999


Q ss_pred             HHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          256 GLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       256 ~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      ||+..|+++ +++|++|++.|+++++.|+++|.+.+++ +|.++
T Consensus       228 ~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~-~~~~~  270 (279)
T PRK07417        228 MMAEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQ-KLEQT  270 (279)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            999999987 6999999999999999999999999888 66655

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=100.00  E-value=4.7e-45  Score=336.39  Aligned_cols=239  Identities=19%  Similarity=0.281  Sum_probs=197.8

Q ss_pred             HHHHHHHcC--CeEEEEcCCCCcHHHHHhCCCceecCh-hhHhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEc
Q 044593           46 LAKAFARHH--HTLLVHSRSDHSPAVRQQLNAPFFADL-NDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDV  122 (335)
Q Consensus        46 iA~~L~~~G--~~V~~~dr~~~~~~~a~~~g~~~~~~~-~~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~  122 (335)
                      ||++|+++|  ++|++||+++...+.+.+.|+...... .+.+ .++|+||+|||+..+.++++++. +.++++++|+|+
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~-~~~DlvvlavP~~~~~~~l~~~~-~~~~~~~iv~Dv   78 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAV-EDADLVVLAVPVSAIEDVLEEIA-PYLKPGAIVTDV   78 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHG-GCCSEEEE-S-HHHHHHHHHHHH-CGS-TTSEEEE-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHh-cCCCEEEEcCCHHHHHHHHHHhh-hhcCCCcEEEEe
Confidence            688999999  689999999999888989999753322 4556 79999999999999999999996 689999999999


Q ss_pred             CCCCchHHHHHHhhCCCCCceEeccccCCCCCc------ccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEE
Q 044593          123 LSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMV  196 (335)
Q Consensus       123 ~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~  196 (335)
                      +|+|..+++.+++.++.+.+||++|||||++.+      .+.|.|.+++++|    .+..+.+.++.++++|+.+|++++
T Consensus        79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p----~~~~~~~~~~~~~~l~~~~Ga~~~  154 (258)
T PF02153_consen   79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCP----GEDTDPEALELVEELWEALGARVV  154 (258)
T ss_dssp             -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEE----CTTS-HHHHHHHHHHHHHCT-EEE
T ss_pred             CCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeC----CCCChHHHHHHHHHHHHHCCCEEE
Confidence            999999999999988877899999999999763      3567899988875    333456788999999999999999


Q ss_pred             EeChHHHHHHHHHhhhhHHHHHHHHHHc----CCC---CCCCCCcchhhHHHHHHHhhCCChHhHHHHHhhCHhH-HHHH
Q 044593          197 EMSCFDHDKYAAGSQFVTHTMGRVLERF----GVE---SSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNS-LEQL  268 (335)
Q Consensus       197 ~~~~~eHD~~~A~~s~lph~la~aL~~~----~~~---~~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N~~~-~~~l  268 (335)
                      ++++++||++||++||+||+++.+|+..    ..+   ...+++++|++++|+    ++++|+||++||..|+++ .+.|
T Consensus       155 ~~~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~~frd~tRi----a~~~p~l~~~I~~~N~~~~~~~l  230 (258)
T PF02153_consen  155 EMDAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGGGFRDMTRI----ASSDPELWADIFLSNPENLLEAL  230 (258)
T ss_dssp             E--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTHHHHHHHGG----GGS-HHHHHHHHHHTHHHHHHHH
T ss_pred             EcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcchhHHhhccc----ccCChHHHHHHHHHCHHHHHHHH
Confidence            9999999999999999999999988762    111   235789999999987    899999999999999985 6999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHh
Q 044593          269 QRLEMAFESIKQQLFGQMFRVYRKEL  294 (335)
Q Consensus       269 ~~~~~~l~~l~~~l~~~~~~~~~~~~  294 (335)
                      ++|++.|+++++.|+++|.++|+++|
T Consensus       231 ~~~~~~L~~l~~~l~~~d~~~l~~~l  256 (258)
T PF02153_consen  231 DEFIKELNELREALEAGDEEELEELL  256 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHh
Confidence            99999999999999999999998843

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-43  Score=339.30  Aligned_cols=241  Identities=17%  Similarity=0.204  Sum_probs=197.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..++|+|||+ |+||+|+|++|++. |++|+++|++.+.           ..++.+.+ .+||+||+|||+..+.+++++
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------~~~~~~~v-~~aDlVilavPv~~~~~~l~~   70 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------SLDPATLL-QRADVLIFSAPIRHTAALIEE   70 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------cCCHHHHh-cCCCEEEEeCCHHHHHHHHHH
Confidence            4679999999 99999999999974 8899999986321           23445666 799999999999999999999


Q ss_pred             ccccc---cCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHH
Q 044593          108 IPFQR---LKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKF  184 (335)
Q Consensus       108 l~~~~---l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v  184 (335)
                      +. +.   ++++++|+|++|+|..+++.+.+.   ..+||++|||||++.+ ..|+|.++++|+.    .  ..+.++++
T Consensus        71 l~-~~~~~l~~~~iVtDVgSvK~~i~~~~~~~---~~~fVG~HPMaG~E~s-~lf~g~~~iltp~----~--~~~~~~~v  139 (370)
T PRK08818         71 YV-ALAGGRAAGQLWLDVTSIKQAPVAAMLAS---QAEVVGLHPMTAPPKS-PTLKGRVMVVCEA----R--LQHWSPWV  139 (370)
T ss_pred             Hh-hhhcCCCCCeEEEECCCCcHHHHHHHHhc---CCCEEeeCCCCCCCCC-cccCCCeEEEeCC----C--chhHHHHH
Confidence            85 33   799999999999999888887543   3569999999999976 4688999888752    2  22346789


Q ss_pred             HHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcC----C---C---CCCCCCcchh-hH---HHHHHHhhCCC
Q 044593          185 LDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFG----V---E---SSPINTKGYE-TL---LDLVDNTKGDS  250 (335)
Q Consensus       185 ~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~----~---~---~~~~~~~gf~-~~---~rl~~~ia~~~  250 (335)
                      +++|+.+|+++++|++++||++||++|||||+.+.+++...    .   .   ...+.++||+ ++   +|+    +++|
T Consensus       140 ~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~~~~~~~~~~~~~~~f~~~gFr~d~t~iTRI----Ass~  215 (370)
T PRK08818        140 QSLCSALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLRDYAPLLGELRALMPYRSASFELDTAVIARI----LSLN  215 (370)
T ss_pred             HHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccchhhHHHhhhcchh----hcCC
Confidence            99999999999999999999999999988887655443221    0   0   1268899999 44   566    9999


Q ss_pred             hHhHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---ccCc
Q 044593          251 FDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKEL---FGSA  298 (335)
Q Consensus       251 ~~lw~~I~~~N~~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~---~~~~  298 (335)
                      |+||+|||..|++.++.|++|++.|+++++.++++|.+.+.+ +   |.++
T Consensus       216 P~mW~dI~~~N~~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~-~~~~f~~a  265 (370)
T PRK08818        216 PSIYEDIQFGNPYVGEMLDRLLAQLQELRALVAQGDDAARAR-FRAQFLHA  265 (370)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHH
Confidence            999999999999557999999999999999999999987555 5   6665

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-43  Score=341.10  Aligned_cols=247  Identities=21%  Similarity=0.276  Sum_probs=206.9

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      ..++|+||| +|.||+++|..|+++|++|++||+++.             .+..+++ .+||+||+|+|...+.++++++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~-~~aDlVilavP~~~~~~~~~~l  162 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDIL-ADAGMVIVSVPIHLTEEVIARL  162 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHH-hcCCEEEEeCcHHHHHHHHHHH
Confidence            568999999 999999999999999999999998642             2344555 7899999999999999999998


Q ss_pred             cccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHH
Q 044593          109 PFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVF  188 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~  188 (335)
                      . + ++++++|+|++|+|..++..+.+.++.  .|+++|||+|++.+  ++.+..+++++      .++.+.++.+.++|
T Consensus       163 ~-~-l~~~~iv~Dv~SvK~~~~~~~~~~~~~--~fvg~HPm~G~~~~--~~~~~~vv~~~------~~~~~~~~~~~~l~  230 (374)
T PRK11199        163 P-P-LPEDCILVDLTSVKNAPLQAMLAAHSG--PVLGLHPMFGPDVG--SLAKQVVVVCD------GRQPEAYQWLLEQI  230 (374)
T ss_pred             h-C-CCCCcEEEECCCccHHHHHHHHHhCCC--CEEeeCCCCCCCCc--ccCCCEEEEcC------CCCchHHHHHHHHH
Confidence            5 5 899999999999999888888876543  69999999999864  46666555532      22345678899999


Q ss_pred             HhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHc----CCCC---CCCCCcchhhHHHHHHHhhCCChHhHHHHHhhC
Q 044593          189 AKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERF----GVES---SPINTKGYETLLDLVDNTKGDSFDLYYGLFMYN  261 (335)
Q Consensus       189 ~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~----~~~~---~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N  261 (335)
                      +.+|++++++++++||++||++||+||+++.+++..    +.+.   ..+.+++|++.+.++.||+++||+||+|||..|
T Consensus       231 ~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~~~~~~~~fr~~la~~tRia~~~p~lw~dI~~~N  310 (374)
T PRK11199        231 QVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSS  310 (374)
T ss_pred             HHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcChHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999999999999999999998886432    2221   247899999955555566999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCchhhHH
Q 044593          262 KNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEE  303 (335)
Q Consensus       262 ~~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~  303 (335)
                      +++++.|++|++.|+++++.++++|.+.+.+ +|.++.....
T Consensus       311 ~~~~~~l~~~~~~l~~l~~~l~~~d~~~l~~-~~~~a~~~~~  351 (374)
T PRK11199        311 PENLALIKRYYQRFGEALELLEQGDKQAFID-SFRKVEHWFG  351 (374)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHh
Confidence            9988999999999999999999999999888 6666654333

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-43  Score=322.25  Aligned_cols=314  Identities=54%  Similarity=0.848  Sum_probs=278.2

Q ss_pred             chhhhHhhhhhcCCCccccchhhcccCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecCh
Q 044593            2 PLRHVIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADL   81 (335)
Q Consensus         2 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~   81 (335)
                      |--..+|+++++|.+||......-.......+|+|||+|+||..+|..|.++||.|.++||++ ....++..|...++.+
T Consensus        23 p~~~~~~a~~~~~i~d~~~~~~s~~~~k~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~l  101 (480)
T KOG2380|consen   23 PRSLRIRAIDAAQIFDYMVSEDSIEQWKATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLL  101 (480)
T ss_pred             cHHHHHHhhhhhhhhhcccCcchhhhcccceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccH
Confidence            345679999999999997665443344567899999999999999999999999999999998 5555788898888888


Q ss_pred             hhHhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCC
Q 044593           82 NDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWEN  161 (335)
Q Consensus        82 ~~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g  161 (335)
                      .+++..+.|+|++||....+..++..+.++.++.|++++|+.|+|....+.+.+++|+++.++++|||+||+.....|.|
T Consensus       102 hdlcerhpDvvLlctsilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqg  181 (480)
T KOG2380|consen  102 HDLCERHPDVVLLCTSILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQG  181 (480)
T ss_pred             HHHHhcCCCEEEEEehhhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCcccc
Confidence            88887789999999999999999999976668999999999999999999999999999999999999999977778999


Q ss_pred             CcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCcchhhHHH
Q 044593          162 LPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLD  241 (335)
Q Consensus       162 ~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~~~~~~~~gf~~~~r  241 (335)
                      .|+++.+++++......+.++.+.++|...||++++|+.++||++.|-+|.++|.+...|..+.....|+.++||+.++.
T Consensus       182 lpfVydkvRig~~~~r~ercE~fleIf~cegckmVemS~eeHDkiaAdsQfVTHtagr~lg~aw~~syPintkGyEnlld  261 (480)
T KOG2380|consen  182 LPFVYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMSYEEHDKIAADSQFVTHTAGRSLGSAWAKSYPINTKGYENLLD  261 (480)
T ss_pred             CceEEEEeeccccccchHHHHHHHHHHHhcCCeEEEEEeecccccccchhHHHHHHHHHHHHhhhhhCceecccHHHHHH
Confidence            99999988887655667899999999999999999999999999999999999998887766555577899999999999


Q ss_pred             HHHHhhCCChHhHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCchhhHHHHHHhhhhhhhhhhcCCC
Q 044593          242 LVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAEEEEEEERVRLLSATKETQNGAP  321 (335)
Q Consensus       242 l~~~ia~~~~~lw~~I~~~N~~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (335)
                      |+.+|.+++|++|+++|.+||+++++|++|..+.+++++.+..+.+..+|+++|+.+ .+...+..     .+++.++..
T Consensus       262 LseniysdsfhlyyGLfiyNpnAleqleryd~afeelfkelfsrlhqeyrkq~f~ge-~fvfgkt~-----~lllnD~~l  335 (480)
T KOG2380|consen  262 LSENIYSDSFHLYYGLFIYNPNALEQLERYDTAFEELFKELFSRLHQEYRKQLFKGE-QFVFGKTG-----LLLLNDTIL  335 (480)
T ss_pred             HHHHhhcchhhheeeeeeeChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccc-cccccccc-----cccccccch
Confidence            999999999999999999999999999999999999999999999999999999877 44444443     666666655


Q ss_pred             c
Q 044593          322 V  322 (335)
Q Consensus       322 ~  322 (335)
                      .
T Consensus       336 d  336 (480)
T KOG2380|consen  336 D  336 (480)
T ss_pred             h
Confidence            4

>PRK08507 prephenate dehydrogenase; Validated

Probab=100.00  E-value=1.1e-42  Score=323.65  Aligned_cols=252  Identities=20%  Similarity=0.271  Sum_probs=211.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhCCCc-eecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLNAP-FFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~g~~-~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      |||+|||+|+||+++|..|.+.|+  +|++||++++..+.+.+.|+. ...+..++.  ++|+||+|||+..+.+++.++
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aD~Vilavp~~~~~~~~~~l   78 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK--KCDVIFLAIPVDAIIEILPKL   78 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh--cCCEEEEeCcHHHHHHHHHHH
Confidence            589999999999999999999996  789999998877777778874 344566653  599999999999999999998


Q ss_pred             cccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc-c-----cccCCCcceecccccCCChhHHHHHH
Q 044593          109 PFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA-K-----SSWENLPFMYDKVRIGNDEERIKRVD  182 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~-~-----~~~~g~~~i~~~~~~~~~~~~~~~~~  182 (335)
                      . + ++++++|+|++|+|..+.+.+.+..  +..|+++|||+|.++. +     ..|.|..+++++    .+..+.+.++
T Consensus        79 ~-~-l~~~~iv~d~gs~k~~i~~~~~~~~--~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~----~~~~~~~~~~  150 (275)
T PRK08507         79 L-D-IKENTTIIDLGSTKAKIIESVPKHI--RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCD----VEKSGEKHQE  150 (275)
T ss_pred             h-c-cCCCCEEEECccchHHHHHHHHHhc--CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEec----CCCCCHHHHH
Confidence            5 6 8899999999999998888776653  2469999999987642 1     245677767753    3333456788


Q ss_pred             HHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcC---CCC---CCCCCcchhhHHHHHHHhhCCChHhHHH
Q 044593          183 KFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFG---VES---SPINTKGYETLLDLVDNTKGDSFDLYYG  256 (335)
Q Consensus       183 ~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~---~~~---~~~~~~gf~~~~rl~~~ia~~~~~lw~~  256 (335)
                      .++++|+.+|++++++++++||+++|++||+||+++.+|+...   .+.   ..+.++||++++|+    ++++|+||+|
T Consensus       151 ~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~~~~~~~~~~~~~~~gfrd~tri----a~~~p~l~~~  226 (275)
T PRK08507        151 RAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHIISFALANTVLKEEDERNIFDLAGGGFRSMSRL----AKSSPAMWSD  226 (275)
T ss_pred             HHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHhhcccchhhhhhc----ccCCHHHHHH
Confidence            9999999999999999999999999999999999999886542   221   26789999999998    8999999999


Q ss_pred             HHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          257 LFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       257 I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      ||..|+++ ++.|++|++.|+++++.|+++|.+.+.+ +|.++
T Consensus       227 i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~-~~~~~  268 (275)
T PRK08507        227 IFKQNKENVLEAIDEFIKELEQFKQLIENEDWEELEE-WMEQA  268 (275)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            99999987 5999999999999999999999998877 55544

>PRK08655 prephenate dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-42  Score=340.69  Aligned_cols=259  Identities=26%  Similarity=0.392  Sum_probs=224.0

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      |||+||| +|.||+++|..|.+.|++|++|||+++.. +.+.+.|+....+..+.+ .++|+||+|+|+..+.+++.++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~-~~aDvVIlavp~~~~~~vl~~l~   79 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAA-KDADIVIISVPINVTEDVIKEVA   79 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHh-ccCCEEEEecCHHHHHHHHHHHH
Confidence            6899997 89999999999999999999999998663 566777887666777776 78999999999999999999985


Q ss_pred             ccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHH
Q 044593          110 FQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFA  189 (335)
Q Consensus       110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~  189 (335)
                       +.++++++|+|++|+|..+.+.+.+.++.+..|+++|||+||...  .+.|..++++|    .+..+.+.++.++++|+
T Consensus        80 -~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~--~~~g~~~il~p----~~~~~~~~~~~v~~ll~  152 (437)
T PRK08655         80 -PHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTP--SLKGQVVILTP----TEKRSNPWFDKVKNFLE  152 (437)
T ss_pred             -hhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCc--ccCCCEEEEec----CCCCCHHHHHHHHHHHH
Confidence             678999999999999999999999888877889999999998753  46777777754    33334567889999999


Q ss_pred             hcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHc----CCC---CCCCCCcchhhHHHHHHHhhCCChHhHHHHHhhCH
Q 044593          190 KEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERF----GVE---SSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNK  262 (335)
Q Consensus       190 ~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~----~~~---~~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N~  262 (335)
                      .+|++++++++++||+++|++||+||+++.+++..    +.+   ...+++++|+++..++.||+++||+||++||..||
T Consensus       153 ~~G~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tRIa~~~p~lw~dI~~~N~  232 (437)
T PRK08655        153 KEGARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASPIYELMIDIIGRILGQNPYLYASIQMNNP  232 (437)
T ss_pred             HcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHHHhcCCHHHHHHHHHhCH
Confidence            99999999999999999999999999988777543    333   23588999999988778889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCch
Q 044593          263 NSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAE  299 (335)
Q Consensus       263 ~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~  299 (335)
                      +..+++++|++.|+++++.++++|++.+.+ +|.++.
T Consensus       233 ~~~~~l~~~~~~l~~l~~~l~~~D~~~l~~-~~~~a~  268 (437)
T PRK08655        233 QIPEIHETFIKECEELSELVKNGDREEFVE-RMKEAA  268 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence            768999999999999999999999999888 565554

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=100.00  E-value=1.3e-42  Score=327.87  Aligned_cols=260  Identities=20%  Similarity=0.266  Sum_probs=218.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhCCCc--eecChhhHhhcCCCEEEEecCchhHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLNAP--FFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~g~~--~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      .+..+||+|||+|.||++++..|.+.|+  +|++||++++..+.+.+.|+.  ...+..+.+ .++|+||+|+|.....+
T Consensus         3 ~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~-~~aDvViiavp~~~~~~   81 (307)
T PRK07502          3 APLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAV-KGADLVILCVPVGASGA   81 (307)
T ss_pred             ccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHh-cCCCEEEECCCHHHHHH
Confidence            3456899999999999999999999985  899999998877777777763  334566666 78999999999999888


Q ss_pred             HHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc-c-----cccCCCcceecccccCCChhH
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA-K-----SSWENLPFMYDKVRIGNDEER  177 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~-~-----~~~~g~~~i~~~~~~~~~~~~  177 (335)
                      +++++. +.++++++|+|++|+|..+.+.+.+.++.+.+|+++|||+|++.. .     ..|.|.++++++    .+..+
T Consensus        82 v~~~l~-~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~----~~~~~  156 (307)
T PRK07502         82 VAAEIA-PHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTP----PEGTD  156 (307)
T ss_pred             HHHHHH-hhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeC----CCCCC
Confidence            998885 678899999999999988888887777766789999999998752 1     345666666653    22334


Q ss_pred             HHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcC--CCC------CCCCCcchhhHHHHHHHhhCC
Q 044593          178 IKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFG--VES------SPINTKGYETLLDLVDNTKGD  249 (335)
Q Consensus       178 ~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~--~~~------~~~~~~gf~~~~rl~~~ia~~  249 (335)
                      .+.++.+.++|+.+|++++++++++||+++|++||+||+++++|+...  .+.      ..++++||||++|+    +++
T Consensus       157 ~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~~~~~~~~~~~~~~~~gfrd~tRi----a~~  232 (307)
T PRK07502        157 PAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSASGFRDFTRI----AAS  232 (307)
T ss_pred             HHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhhhcccchHHHHHhccccccccccc----ccC
Confidence            567889999999999999999999999999999999999999886432  111      15889999999998    899


Q ss_pred             ChHhHHHHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          250 SFDLYYGLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       250 ~~~lw~~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      +|+||+|||..|+++ ++.|++|++.|+++++.|+++|.+.+.+ +|.++
T Consensus       233 ~~~~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~-~~~~~  281 (307)
T PRK07502        233 DPTMWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFD-LFTRT  281 (307)
T ss_pred             ChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            999999999999988 5999999999999999999999999888 66655

>PRK06545 prephenate dehydrogenase; Validated

Probab=100.00  E-value=4.7e-42  Score=330.56  Aligned_cols=256  Identities=18%  Similarity=0.278  Sum_probs=215.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--CCce--ecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--NAPF--FADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--g~~~--~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ++|+|||+|+||+++|.+|+++|++|.+|+++++........  |+..  .+++.+++ .+||+||+|+|+..+.+++++
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~aDlVilavP~~~~~~vl~~   79 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAA-AEADLIVLAVPVDATAALLAE   79 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHh-cCCCEEEEeCCHHHHHHHHHH
Confidence            479999999999999999999999999999888765444333  4322  34556666 799999999999999999999


Q ss_pred             cccc-ccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc------ccccCCCcceecccccCCChhHHHH
Q 044593          108 IPFQ-RLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGNDEERIKR  180 (335)
Q Consensus       108 l~~~-~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~~~~~~~  180 (335)
                      +. + .++++++|+|++|+|..+.+.+++.++...+|+++|||+|++.+      ...|.|.++++++    .+..+.+.
T Consensus        80 l~-~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~----~~~~~~~~  154 (359)
T PRK06545         80 LA-DLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTP----DDHTDPDA  154 (359)
T ss_pred             Hh-hcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEec----CCCCCHHH
Confidence            85 4 47899999999999999999888876666789999999999863      2456777777764    34445677


Q ss_pred             HHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCC-C---CCCCCCcchhhHHHHHHHhhCCChHhHHH
Q 044593          181 VDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGV-E---SSPINTKGYETLLDLVDNTKGDSFDLYYG  256 (335)
Q Consensus       181 ~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~-~---~~~~~~~gf~~~~rl~~~ia~~~~~lw~~  256 (335)
                      ++.++++|+.+|++++++++++||+++|++||+||+++.+|+.... +   ...++++||++++|+    ++++|.||.+
T Consensus       155 ~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al~~~~~~~~~~~~~la~~gfrd~tRi----a~~~p~~w~d  230 (359)
T PRK06545        155 VAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSLAARLAGEHPLALRLAAGGFRDITRI----ASSDPGMWRD  230 (359)
T ss_pred             HHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHHHHhhccCchHHHhhhcccccCCccc----cCCCHHHHHH
Confidence            8899999999999999999999999999999999999998864321 1   235789999999998    7899999999


Q ss_pred             HHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          257 LFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       257 I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      |+.+|+.+ ++.|++|++.|+++++.|+++|.+.+++ +|..+
T Consensus       231 i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~-~~~~~  272 (359)
T PRK06545        231 ILESNAEALLDALDEWIEDLDRARDALESGDAEAIAE-LFDAG  272 (359)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            99999987 6999999999999999999999998887 66655

>PRK06444 prephenate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-38  Score=280.99  Aligned_cols=194  Identities=21%  Similarity=0.360  Sum_probs=163.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhccc
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPF  110 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~  110 (335)
                      |||+|||. |.||.+++..|.++|+.|+                          + .+||+||+|+|...+.++++++. 
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~-~~~DlVilavPv~~~~~~i~~~~-   52 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------I-KKADHAFLSVPIDAALNYIESYD-   52 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------E-CCCCEEEEeCCHHHHHHHHHHhC-
Confidence            69999996 9999999999999999985                          2 57999999999999999998873 


Q ss_pred             cccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHh
Q 044593          111 QRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAK  190 (335)
Q Consensus       111 ~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~  190 (335)
                            .+|+|++|+|..+.+.       ..+||++||||||+.+..++. ..++++     .+..+++.++.++++|+ 
T Consensus        53 ------~~v~Dv~SvK~~i~~~-------~~~~vg~HPMfGp~~a~~~lf-~~~iv~-----~~~~~~~~~~~~~~l~~-  112 (197)
T PRK06444         53 ------NNFVEISSVKWPFKKY-------SGKIVSIHPLFGPMSYNDGVH-RTVIFI-----NDISRDNYLNEINEMFR-  112 (197)
T ss_pred             ------CeEEeccccCHHHHHh-------cCCEEecCCCCCCCcCccccc-ceEEEE-----CCCCCHHHHHHHHHHHc-
Confidence                  2799999999965432       236999999999887542221 244443     22334556788999998 


Q ss_pred             cCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCcchhhHHHHHHHhhCCChHhHHHHHhhCHhHHHHHHH
Q 044593          191 EGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQR  270 (335)
Q Consensus       191 ~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~~~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N~~~~~~l~~  270 (335)
                       |++++.+++++||+++|++|||||++|.+|...  . .++++++||+++|+++++.++||+||+|||.+||++ +.+++
T Consensus       113 -G~~~~~~t~eeHD~~~A~ishLpH~ia~al~~~--~-~~~~t~~fr~l~ria~~~~~~~p~lw~dI~~~N~~a-~~~~~  187 (197)
T PRK06444        113 -GYHFVEMTADEHDLLMSEIMVKPYIISMILKDI--K-SDIKTGSFDKLLEVSEIKEKENWEVFNDTIIYNPYT-NVIND  187 (197)
T ss_pred             -CCEEEEeCHHHHHHHHHHHHHHHHHHHHHHccC--C-CCCCCccHHHHHHHHHHhccCCHHHHHHHHHHCchH-HHHHH
Confidence             899999999999999999999999999998773  2 578999999999999888899999999999999999 88999


Q ss_pred             HHHHHHHH
Q 044593          271 LEMAFESI  278 (335)
Q Consensus       271 ~~~~l~~l  278 (335)
                      |.+.+++.
T Consensus       188 ~~~~~~~~  195 (197)
T PRK06444        188 LIERLNKV  195 (197)
T ss_pred             HHHHHhhc
Confidence            98888764

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=100.00  E-value=3.1e-35  Score=307.49  Aligned_cols=257  Identities=18%  Similarity=0.231  Sum_probs=216.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHhCCCc--eecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPAVRQQLNAP--FFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~~a~~~g~~--~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      .+||+|||+|+||.+++..|.+.|  ++|++||++++..+.+.+.|+.  ...+..+++ .++|+||+|+|+..+.++++
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~-~~aDvVilavp~~~~~~vl~   81 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAV-SGADVIVLAVPVLAMEKVLA   81 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHh-cCCCEEEECCCHHHHHHHHH
Confidence            478999999999999999999998  4899999999887777788875  344566666 78999999999999999999


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCC-CCceEeccccCCCCCc------ccccCCCcceecccccCCChhHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ-DFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGNDEERIK  179 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~-~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~~~~~~  179 (335)
                      ++. +.++++++|+|++|+|..+.+.+++.++. ..+|++.|||+|++..      +..|.+.++++++    ....+.+
T Consensus        82 ~l~-~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~----~~~~~~~  156 (735)
T PRK14806         82 DLK-PLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTP----LAETDPA  156 (735)
T ss_pred             HHH-HhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEEC----CCCCCHH
Confidence            985 67888999999999999888988887753 4689999999999862      2345666666653    3333456


Q ss_pred             HHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcC----CC--CCCCCCcchhhHHHHHHHhhCCChHh
Q 044593          180 RVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFG----VE--SSPINTKGYETLLDLVDNTKGDSFDL  253 (335)
Q Consensus       180 ~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~----~~--~~~~~~~gf~~~~rl~~~ia~~~~~l  253 (335)
                      ..+.++++|+.+|++++++++++||+++|++||+||+++++|++.-    ..  ...+++++|++++|+    ++++|+|
T Consensus       157 ~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~~~~~~~a~~~f~~~tRi----a~~~p~~  232 (735)
T PRK14806        157 ALARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLANREDNLDIFRYAAGGFRDFTRI----AASDPVM  232 (735)
T ss_pred             HHHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHhhcCChhHHHhhhccchhccccc----ccCCHHH
Confidence            7788999999999999999999999999999999998887775432    11  126788999999998    7999999


Q ss_pred             HHHHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          254 YYGLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       254 w~~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      |.||+.+|+.+ ++.|+.|++.|+.+++.+.++|++.+++ +|.++
T Consensus       233 ~~di~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~-~~~~~  277 (735)
T PRK14806        233 WHDIFLANKEAVLRALDHFRDDLDALRAAIEAGDGHALLG-VFTRA  277 (735)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHH
Confidence            99999999987 5999999999999999999999999888 66655

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=100.00  E-value=1.9e-35  Score=305.41  Aligned_cols=198  Identities=16%  Similarity=0.194  Sum_probs=174.4

Q ss_pred             EEEecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCC-CceEeccccCCCCCc------ccccCCCcc
Q 044593           92 VLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD-FDILCTHPMFGPESA------KSSWENLPF  164 (335)
Q Consensus        92 VIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~-~~~v~~HPmaG~~~~------~~~~~g~~~  164 (335)
                      ||+|+|+..+.++++++. +.++++++|+|++|+|..+++.+.+.++.. .+||++|||+|+|.+      ++.|+|.++
T Consensus         1 vila~Pv~~~~~~~~~~~-~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~   79 (673)
T PRK11861          1 VLLAAPVAQTGPLLARIA-PFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV   79 (673)
T ss_pred             CEEEcCHHHHHHHHHHHh-hhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence            689999999999999996 789999999999999999999998887643 469999999999984      356889999


Q ss_pred             eecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCC---C-C--CCCCCcchhh
Q 044593          165 MYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGV---E-S--SPINTKGYET  238 (335)
Q Consensus       165 i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~---~-~--~~~~~~gf~~  238 (335)
                      ++||    .+..+.+.+++++++|+.+|++++.+++++||+++|++|||||++|++|++...   + .  ..++++||||
T Consensus        80 il~p----~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~~~~~~~~~~~~~a~~gfrd  155 (673)
T PRK11861         80 VLCA----LPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQILGESDAELKFSYAAGGFRD  155 (673)
T ss_pred             EEec----CCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHHhhccChhHHHHhcccchhc
Confidence            9975    333456678999999999999999999999999999999999999999976421   1 1  2588999999


Q ss_pred             HHHHHHHhhCCChHhHHHHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCch
Q 044593          239 LLDLVDNTKGDSFDLYYGLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAE  299 (335)
Q Consensus       239 ~~rl~~~ia~~~~~lw~~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~  299 (335)
                      +||+    |++||+||+|||.+|+++ ++.|++|++.|+++++.|+++|++.+.+ +|.++.
T Consensus       156 ~tRi----a~~~p~lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~-~~~~~~  212 (673)
T PRK11861        156 FTRI----AASSPEMWRDVCLANRAALLDELDAYTAVLARLRAAIDAGDGAALEA-VFARSR  212 (673)
T ss_pred             cccc----ccCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHH
Confidence            9998    899999999999999998 6999999999999999999999999877 776663

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.85  E-value=1.4e-19  Score=167.29  Aligned_cols=171  Identities=15%  Similarity=0.120  Sum_probs=132.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC----eEEEE-cCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH----TLLVH-SRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~----~V~~~-dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      |||+|||+|+||++++..|.++|+    +|++| +|+++..+.+.+.|+....++.+++ +++|+||+|+|+..+.+++.
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~-~~aDvVil~v~~~~~~~vl~   79 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVV-KSSDVIILAVKPQVVKDVLT   79 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHH-hcCCEEEEEECcHHHHHHHH
Confidence            789999999999999999999998    89999 9998777767778988777887777 78999999999999999999


Q ss_pred             hccccccCCccEEEEc-CCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDV-LSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~-~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                      ++. +.++++++|+++ ++++   .+.+.+.++.. +++..+|..+...+    .+...++     .....+++..+.++
T Consensus        80 ~l~-~~~~~~~~iIs~~~g~~---~~~l~~~~~~~-~vvr~mP~~~~~~~----~~~~~l~-----~~~~~~~~~~~~v~  145 (266)
T PLN02688         80 ELR-PLLSKDKLLVSVAAGIT---LADLQEWAGGR-RVVRVMPNTPCLVG----EAASVMS-----LGPAATADDRDLVA  145 (266)
T ss_pred             HHH-hhcCCCCEEEEecCCCc---HHHHHHHcCCC-CEEEECCCcHHHHh----CceEEEE-----eCCCCCHHHHHHHH
Confidence            884 567788877766 4443   35555555543 67777776665543    2222222     12223456778999


Q ss_pred             HHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHH
Q 044593          186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMG  218 (335)
Q Consensus       186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la  218 (335)
                      ++|+.+|. ++++++++||.+++.+...|.+++
T Consensus       146 ~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~  177 (266)
T PLN02688        146 TLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIF  177 (266)
T ss_pred             HHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHH
Confidence            99999998 999999999999998887777654

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.85  E-value=9.5e-20  Score=168.59  Aligned_cols=173  Identities=15%  Similarity=0.092  Sum_probs=130.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC---CeEEEEcCCCCcHHHHHh-CCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH---HTLLVHSRSDHSPAVRQQ-LNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G---~~V~~~dr~~~~~~~a~~-~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      +|||+|||+|.||++++..|.++|   ++|.+|+|+++..+.+.+ .|+....+..+++ .++|+||+|+|+..+.++++
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~advVil~v~~~~~~~v~~   80 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAA-QEADVVVLAVKPQVMEEVLS   80 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHH-hcCCEEEEEcCHHHHHHHHH
Confidence            679999999999999999999998   789999999876655554 4776666777776 78999999999999999999


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD  186 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~  186 (335)
                      ++. +.+ +..+|..+++++   .+.+++.++.+.+++..||......+    .+.. .++    ..+..+++..+.+++
T Consensus        81 ~l~-~~~-~~~vvs~~~gi~---~~~l~~~~~~~~~iv~~~P~~p~~~~----~~~~-~i~----~~~~~~~~~~~~v~~  146 (267)
T PRK11880         81 ELK-GQL-DKLVVSIAAGVT---LARLERLLGADLPVVRAMPNTPALVG----AGMT-ALT----ANALVSAEDRELVEN  146 (267)
T ss_pred             HHH-hhc-CCEEEEecCCCC---HHHHHHhcCCCCcEEEecCCchHHHc----CceE-EEe----cCCCCCHHHHHHHHH
Confidence            985 455 334455555554   35666777655678899996644332    2322 222    233345677889999


Q ss_pred             HHHhcCCEEEEeChHHHHHHHHHhhhhHHHHH
Q 044593          187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMG  218 (335)
Q Consensus       187 l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la  218 (335)
                      +|+.+|..++..++++||.+++++++.|.++.
T Consensus       147 l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~  178 (267)
T PRK11880        147 LLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVF  178 (267)
T ss_pred             HHHhCCeEEEECChHhcchHHHHhcChHHHHH
Confidence            99999975555569999999999999887653

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.83  E-value=3.4e-19  Score=165.48  Aligned_cols=175  Identities=14%  Similarity=0.119  Sum_probs=139.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC----eEEEEcCCCCcHHHHH-hCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH----TLLVHSRSDHSPAVRQ-QLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~----~V~~~dr~~~~~~~a~-~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      .+||+|||+|+||++++..|.++|+    +|+++||+++..+.+. +.|+....+..+++ .+||+||+|+|++.+.+++
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~-~~aDiIiLavkP~~~~~vl   80 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVA-NSADILILSIKPDLYSSVI   80 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHH-hhCCEEEEEeChHHHHHHH
Confidence            4589999999999999999999885    6999999987766554 47876667777777 7999999999999999999


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                      +++. +.++++++|+|+...  ..++.+++.++...+++...|......+    .|...+..     ++..+.+..+.++
T Consensus        81 ~~l~-~~~~~~~lvISi~AG--i~i~~l~~~l~~~~~vvR~MPN~~~~vg----~g~t~~~~-----~~~~~~~~~~~v~  148 (272)
T PRK12491         81 NQIK-DQIKNDVIVVTIAAG--KSIKSTENEFDRKLKVIRVMPNTPVLVG----EGMSALCF-----NEMVTEKDIKEVL  148 (272)
T ss_pred             HHHH-HhhcCCcEEEEeCCC--CcHHHHHHhcCCCCcEEEECCChHHHHc----CceEEEEe-----CCCCCHHHHHHHH
Confidence            9985 667888999998655  4568888888755578899998877765    34433331     2333445668889


Q ss_pred             HHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHH
Q 044593          186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGR  219 (335)
Q Consensus       186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~  219 (335)
                      ++|+.+|. ++++++++-|.+.|++...|-.+..
T Consensus       149 ~lf~~~G~-~~~~~E~~~d~~talsgsgPAf~~~  181 (272)
T PRK12491        149 NIFNIFGQ-TEVVNEKLMDVVTSISGSSPAYVYM  181 (272)
T ss_pred             HHHHcCCC-EEEEcHHHhhhHHHhccCcHHHHHH
Confidence            99999995 6888999999999999999886654

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.82  E-value=2e-18  Score=159.60  Aligned_cols=172  Identities=18%  Similarity=0.220  Sum_probs=141.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-HHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh---
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK---  106 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~---  106 (335)
                      +||++||+|.||..+|..|.++||+|++|||+++. .+.+...|.....++.+++ +++|+||+|+|.+. +.+++.   
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa-~~aDvVitmv~~~~~V~~V~~g~~   79 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAA-AEADVVITMLPDDAAVRAVLFGEN   79 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHH-HhCCEEEEecCCHHHHHHHHhCcc
Confidence            58999999999999999999999999999999977 7778888999888888888 89999999999886 677774   


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                      .+. ..+++|++++|++|+.......+.+.+. .+..|+-. |+.|...+.  .+|...+++    +.+   ++.+++++
T Consensus        80 g~~-~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDA-PVsGg~~~A--~~GtLtimv----GG~---~~~f~r~~  148 (286)
T COG2084          80 GLL-EGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDA-PVSGGVPGA--AAGTLTIMV----GGD---AEAFERAK  148 (286)
T ss_pred             chh-hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEec-CccCCchhh--hhCceEEEe----CCC---HHHHHHHH
Confidence            343 5678999999999998777666665553 45678874 999988653  256655553    554   46889999


Q ss_pred             HHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      ++|+.+|.+++++.+.--...+.+++++--
T Consensus       149 pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~  178 (286)
T COG2084         149 PVLEAMGKNIVHVGPVGAGQAAKLANNILL  178 (286)
T ss_pred             HHHHHhcCceEEECCCCchHHHHHHHHHHH
Confidence            999999999999999877778888776644

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.82  E-value=2.1e-18  Score=160.89  Aligned_cols=175  Identities=12%  Similarity=0.151  Sum_probs=132.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcC----CeEEEEcCCCC-cHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHH----HTLLVHSRSDH-SPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G----~~V~~~dr~~~-~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      |..|||+|||+|+||.+++..|.++|    ++|++++|+++ ..+ .+.+.|+....++.+++ .++|+||+|+|++.+.
T Consensus         1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~-~~aDvVilav~p~~~~   79 (279)
T PRK07679          1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELL-TDANILFLAMKPKDVA   79 (279)
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHH-hcCCEEEEEeCHHHHH
Confidence            45689999999999999999999988    78999999864 333 33456877777777777 7899999999999999


Q ss_pred             HHHhhccccccCCccEEEEc-CCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHH
Q 044593          103 SVLKSIPFQRLKRSTLFVDV-LSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRV  181 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~-~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~  181 (335)
                      +++.++. +.++++++|+++ ++++.   +.+++.++.+..+++.||+.....+    .+.. +++    +++..+.+..
T Consensus        80 ~vl~~l~-~~~~~~~liIs~~aGi~~---~~l~~~~~~~~~v~r~mPn~~~~~~----~~~t-~~~----~~~~~~~~~~  146 (279)
T PRK07679         80 EALIPFK-EYIHNNQLIISLLAGVST---HSIRNLLQKDVPIIRAMPNTSAAIL----KSAT-AIS----PSKHATAEHI  146 (279)
T ss_pred             HHHHHHH-hhcCCCCEEEEECCCCCH---HHHHHHcCCCCeEEEECCCHHHHHh----cccE-EEe----eCCCCCHHHH
Confidence            9999985 567888999997 66543   5566666655679999998654432    3333 332    2333445677


Q ss_pred             HHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHH
Q 044593          182 DKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMG  218 (335)
Q Consensus       182 ~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la  218 (335)
                      +.++++|+.+|. ++++++++.|.+++.+...|..++
T Consensus       147 ~~v~~l~~~~G~-~~~v~e~~~~~~~a~~Gsgpa~~~  182 (279)
T PRK07679        147 QTAKALFETIGL-VSVVEEEDMHAVTALSGSGPAYIY  182 (279)
T ss_pred             HHHHHHHHhCCc-EEEeCHHHhhhHHHhhcCHHHHHH
Confidence            899999999996 678888887877887776666443

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.80  E-value=9e-20  Score=156.86  Aligned_cols=157  Identities=18%  Similarity=0.248  Sum_probs=119.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHhh--
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLKS--  107 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~~--  107 (335)
                      |+||+|||+|.||..+|+.|.++|++|++|||+++..+...+.|+....++.+++ +++|+||+|+|.. ++.+++..  
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~-~~~dvvi~~v~~~~~v~~v~~~~~   79 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAA-EQADVVILCVPDDDAVEAVLFGEN   79 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHH-HHBSEEEE-SSSHHHHHHHHHCTT
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHh-hcccceEeecccchhhhhhhhhhH
Confidence            5799999999999999999999999999999999888778888998899999998 8899999999985 57889888  


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD  186 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~  186 (335)
                      +. +.+++|++|+|++++.......+.+.+. .+.+|+.+ |+.|.....  .+|...++.    +++   ++.++++++
T Consensus        80 i~-~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda-pV~Gg~~~a--~~g~l~~~~----gG~---~~~~~~~~~  148 (163)
T PF03446_consen   80 IL-AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDA-PVSGGPPGA--EEGTLTIMV----GGD---EEAFERVRP  148 (163)
T ss_dssp             HG-GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE-EEESHHHHH--HHTTEEEEE----ES----HHHHHHHHH
T ss_pred             Hh-hccccceEEEecCCcchhhhhhhhhhhhhccceeeee-eeecccccc--cccceEEEc----cCC---HHHHHHHHH
Confidence            64 6789999999999987766666766653 56788875 898876432  245534442    343   467889999


Q ss_pred             HHHhcCCEEE-EeC
Q 044593          187 VFAKEGCRMV-EMS  199 (335)
Q Consensus       187 l~~~~G~~v~-~~~  199 (335)
                      +|+.+|.+++ ++.
T Consensus       149 ~l~~~~~~v~~~~G  162 (163)
T PF03446_consen  149 LLEAMGKNVYHYVG  162 (163)
T ss_dssp             HHHHHEEEEEEE-E
T ss_pred             HHHHHhCCceeeeC
Confidence            9999999888 434

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.79  E-value=1.3e-17  Score=156.50  Aligned_cols=171  Identities=18%  Similarity=0.187  Sum_probs=133.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHhh---
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLKS---  107 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~~---  107 (335)
                      |||+|||+|.||..++..|.++|++|++||+++. .+.+.+.|+....++.+++ +++|+||+|+|.+ .+.+++..   
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~-~~advVi~~v~~~~~v~~v~~~~~g   78 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVT-EASDIIFIMVPDTPQVEEVLFGENG   78 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHH-hcCCEEEEeCCChHHHHHHHcCCcc
Confidence            5899999999999999999999999999999875 3445567887777888877 7999999999987 46777643   


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD  186 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~  186 (335)
                      +. +.+++|++|+|++++.....+.+.+.+ ..+..|+. +|+.|...+..  .|...++.    +++   ++.++++++
T Consensus        79 ~~-~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~--~g~l~~~~----gG~---~~~~~~~~p  147 (292)
T PRK15059         79 CT-KASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAR--EGTLSIMV----GGD---EAVFERVKP  147 (292)
T ss_pred             hh-ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHh--cCcEEEEE----cCC---HHHHHHHHH
Confidence            32 346789999999999877666565544 34677888 69999876432  46544542    444   457889999


Q ss_pred             HHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       187 l~~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      +|+.+|.+++++.+..+...+.+++++..
T Consensus       148 ~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~  176 (292)
T PRK15059        148 LFELLGKNITLVGGNGDGQTCKVANQIIV  176 (292)
T ss_pred             HHHHHcCCcEEeCCccHHHHHHHHHHHHH
Confidence            99999999999999888888888765544

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.77  E-value=2.4e-17  Score=154.49  Aligned_cols=172  Identities=18%  Similarity=0.184  Sum_probs=132.6

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH---hhc
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL---KSI  108 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl---~~l  108 (335)
                      ||+|||+|.||..+|..|.+.|++|++|||+++..+.+.+.|.....+..+++ ++||+||+|+|... +..++   ..+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~v~~~~~~~   79 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVT-EQADVIFTMVPDSPQVEEVAFGENGI   79 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHH-hcCCEEEEecCCHHHHHHHHcCcchH
Confidence            69999999999999999999999999999999887777778887777777777 79999999999864 45554   223


Q ss_pred             cccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHH
Q 044593          109 PFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDV  187 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l  187 (335)
                      . +.++++++|+|++++.....+.+.+.+. .+.+|+. +|++|.+.+.  ..+...++.    +++   ++.++.++++
T Consensus        80 ~-~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~-~pv~g~~~~a--~~g~l~i~~----gg~---~~~~~~~~~l  148 (291)
T TIGR01505        80 I-EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD-APVSGGEIGA--IEGTLSIMV----GGD---QAVFDRVKPL  148 (291)
T ss_pred             h-hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe-cCCCCCHHHH--hcCCEEEEe----cCC---HHHHHHHHHH
Confidence            2 3568899999999887655555655553 3567887 7999886432  245444442    443   4677889999


Q ss_pred             HHhcCCEEEEeChHHHHHHHHHhhhhHHH
Q 044593          188 FAKEGCRMVEMSCFDHDKYAAGSQFVTHT  216 (335)
Q Consensus       188 ~~~~G~~v~~~~~~eHD~~~A~~s~lph~  216 (335)
                      ++.+|.+++++.+..+...+.+++++-..
T Consensus       149 l~~lg~~~~~~g~~g~a~~~Kl~~n~~~~  177 (291)
T TIGR01505       149 FEALGKNIVLVGGNGDGQTCKVANQIIVA  177 (291)
T ss_pred             HHHhcCCeEEeCCCCHHHHHHHHHHHHHH
Confidence            99999999999988888778887766554

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.77  E-value=2.1e-17  Score=154.74  Aligned_cols=169  Identities=14%  Similarity=0.108  Sum_probs=136.1

Q ss_pred             EEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHH---hhcccc
Q 044593           36 VIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVL---KSIPFQ  111 (335)
Q Consensus        36 IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl---~~l~~~  111 (335)
                      |||+|.||..+|..|.++|++|++|||+++..+...+.|+....++.+++ +++|+||+|+|.. .+.+++   ..+. +
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~-~~advVil~vp~~~~~~~v~~g~~~l~-~   78 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAA-EGADRVITMLPAGQHVISVYSGDEGIL-P   78 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHH-hcCCEEEEeCCChHHHHHHHcCcchHh-h
Confidence            68999999999999999999999999999887777788887777888887 8999999999984 467777   5563 4


Q ss_pred             ccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHh
Q 044593          112 RLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAK  190 (335)
Q Consensus       112 ~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~  190 (335)
                      .++++++|+|+++++....+.+.+.+. .+..|+.+ |++|...+..  .|...++.    +++   .+.+++++++|+.
T Consensus        79 ~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~~~a~--~g~l~~~~----gg~---~~~~~~~~~~l~~  148 (288)
T TIGR01692        79 KVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA-PVSGGVGGAR--AGTLTFMV----GGV---AEEFAAAEPVLGP  148 (288)
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC-CCCCCHHHHh--hCcEEEEE----CCC---HHHHHHHHHHHHH
Confidence            678999999999998777777766553 46789886 9999875432  45544442    444   3567888999999


Q ss_pred             cCCEEEEeChHHHHHHHHHhhhhHHH
Q 044593          191 EGCRMVEMSCFDHDKYAAGSQFVTHT  216 (335)
Q Consensus       191 ~G~~v~~~~~~eHD~~~A~~s~lph~  216 (335)
                      +|.+++++++..+...+.+++++...
T Consensus       149 ~g~~~~~~g~~g~g~~~Kl~~n~~~~  174 (288)
T TIGR01692       149 MGRNIVHCGDHGAGQAAKICNNMLLG  174 (288)
T ss_pred             hcCCeEeeCCCCHHHHHHHHHHHHHH
Confidence            99999999988889999998877443

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.76  E-value=6.6e-17  Score=148.23  Aligned_cols=173  Identities=17%  Similarity=0.188  Sum_probs=141.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC----CeEEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH----HTLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G----~~V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      ++||+|||+|+||.+|+..|.+.|    .+|++.+|+++..+ .+.++|+..+++..+++ .++|+||+||++..+.+++
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~-~~advv~LavKPq~~~~vl   79 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAV-EEADVVFLAVKPQDLEEVL   79 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHH-hhCCEEEEEeChHhHHHHH
Confidence            479999999999999999999999    48999999998774 77888887656666776 7899999999999999999


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                      .++. + +.++++|+.+...  ..++.++++++ +.+++...|......+    +|...+..     ++..+++..+.+.
T Consensus        80 ~~l~-~-~~~~~lvISiaAG--v~~~~l~~~l~-~~~vvR~MPNt~a~vg----~g~t~i~~-----~~~~~~~~~~~v~  145 (266)
T COG0345          80 SKLK-P-LTKDKLVISIAAG--VSIETLERLLG-GLRVVRVMPNTPALVG----AGVTAISA-----NANVSEEDKAFVE  145 (266)
T ss_pred             HHhh-c-ccCCCEEEEEeCC--CCHHHHHHHcC-CCceEEeCCChHHHHc----Ccceeeec-----CccCCHHHHHHHH
Confidence            9995 4 7788899988544  44588888888 7789999998877765    45544432     2333455667889


Q ss_pred             HHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHH
Q 044593          186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGR  219 (335)
Q Consensus       186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~  219 (335)
                      ++|+.+| ++++++++.-|.+++++...|-.+..
T Consensus       146 ~l~~~~G-~v~~v~E~~~da~TaisGSgPAyv~~  178 (266)
T COG0345         146 ALLSAVG-KVVEVEESLMDAVTALSGSGPAYVFL  178 (266)
T ss_pred             HHHHhcC-CeEEechHHhhHHHHHhcCCHHHHHH
Confidence            9999999 58999999999999999999987653

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.76  E-value=2.5e-17  Score=154.19  Aligned_cols=182  Identities=14%  Similarity=0.043  Sum_probs=133.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-------------------------CCCceecChhhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-------------------------LNAPFFADLNDL   84 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-------------------------~g~~~~~~~~~~   84 (335)
                      ..+||+|||+|.||+++|..|+.+|++|++||++++..+.+.+                         .++..+++..++
T Consensus         2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            3579999999999999999999999999999999875443321                         122346677776


Q ss_pred             hhcCCCEEEEecCch--hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           85 CELHPDVVLLSTSIL--STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        85 ~~~~aDvVIlavp~~--~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                      + ++||+||.|+|.+  ....+++++. +.++++++|++.+|++..  ..+.+.++...+|+++||...+..      ..
T Consensus        82 ~-~~aDlVieavpe~~~~k~~~~~~l~-~~~~~~~ii~sntSt~~~--~~~~~~~~~~~r~vg~Hf~~p~~~------~~  151 (287)
T PRK08293         82 V-KDADLVIEAVPEDPEIKGDFYEELA-KVAPEKTIFATNSSTLLP--SQFAEATGRPEKFLALHFANEIWK------NN  151 (287)
T ss_pred             h-cCCCEEEEeccCCHHHHHHHHHHHH-hhCCCCCEEEECcccCCH--HHHHhhcCCcccEEEEcCCCCCCc------CC
Confidence            6 7999999999976  5678888885 578889999888887632  455555555557999999665432      11


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcC
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFG  225 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~  225 (335)
                      .+.+    ++.+.++++.++.+.++++.+|.+++.+.++.|+.++.-+.+.----|..|...+
T Consensus       152 lvev----v~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g  210 (287)
T PRK08293        152 TAEI----MGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKG  210 (287)
T ss_pred             eEEE----eCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcC
Confidence            2222    2345566788999999999999999999999999988766544333344444444

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.75  E-value=1.2e-16  Score=150.46  Aligned_cols=170  Identities=16%  Similarity=0.154  Sum_probs=132.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcC---CCEEEEecCch-hHHHHHhh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELH---PDVVLLSTSIL-STQSVLKS  107 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~---aDvVIlavp~~-~~~~vl~~  107 (335)
                      |+|+|||+|.||..+|..|.+.|++|++|||+++..+.+.+.|+....++++++ ++   +|+||+|+|.+ .+.+++..
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~-~~~~~advVi~~vp~~~~~~~v~~~   79 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELV-SKLEAPRTIWVMVPAGEVTESVIKD   79 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHH-HhCCCCCEEEEEecCchHHHHHHHH
Confidence            589999999999999999999999999999998877667778887777888876 44   69999999998 78888888


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD  186 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~  186 (335)
                      +. +.++++++|+|++++.......+.+.+ ..+..|+.+ |+.|...+..  .|.+ ++    ++++   ++.++++++
T Consensus        80 i~-~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vda-pV~G~~~~a~--~g~~-~~----~gG~---~~~~~~~~~  147 (299)
T PRK12490         80 LY-PLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDC-GTSGGVWGLR--NGYC-LM----VGGD---KEIYDRLEP  147 (299)
T ss_pred             Hh-ccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeC-CCCCCHHHHh--cCCe-EE----ecCC---HHHHHHHHH
Confidence            84 568899999999888765555554444 346778775 8998865422  5553 33    2444   457889999


Q ss_pred             HHHhcCC---EEEEeChHHHHHHHHHhhhhH
Q 044593          187 VFAKEGC---RMVEMSCFDHDKYAAGSQFVT  214 (335)
Q Consensus       187 l~~~~G~---~v~~~~~~eHD~~~A~~s~lp  214 (335)
                      +++.+|.   +++++.+..-...+.++.++.
T Consensus       148 ~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~  178 (299)
T PRK12490        148 VFKALAPEGPGYVHAGPVGSGHFLKMVHNGI  178 (299)
T ss_pred             HHHHhcCcCCcEEEECCcCHHHHHHHHHHHH
Confidence            9999997   688888766666777766543

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.74  E-value=1e-16  Score=148.11  Aligned_cols=166  Identities=16%  Similarity=0.215  Sum_probs=123.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC----eEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH----TLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~----~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      ..|||+|||+|+||++++..|.+++.    ++++++++++..      +.....++.+++ .++|+||+|+|+..+.+++
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~-~~~D~Vilavkp~~~~~vl   74 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELA-KTCDIIVLAVKPDLAGKVL   74 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHH-HhCCEEEEEeCHHHHHHHH
Confidence            45799999999999999999999872    599999886432      334455666666 7899999999999999999


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCCC---CceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHH
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD---FDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVD  182 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~---~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~  182 (335)
                      .++. +.++++.+|.++++++.   +.+++.++..   +++++.||..   .+    .| ++.+++    .+..+.+..+
T Consensus        75 ~~i~-~~l~~~~iIS~~aGi~~---~~l~~~~~~~~~vvr~mPn~p~~---~g----~g-~t~i~~----~~~~~~~~~~  138 (260)
T PTZ00431         75 LEIK-PYLGSKLLISICGGLNL---KTLEEMVGVEAKIVRVMPNTPSL---VG----QG-SLVFCA----NNNVDSTDKK  138 (260)
T ss_pred             HHHH-hhccCCEEEEEeCCccH---HHHHHHcCCCCeEEEECCCchhH---hc----ce-eEEEEe----CCCCCHHHHH
Confidence            9995 56777788889999875   4555555533   3566666622   21    22 234432    2233455678


Q ss_pred             HHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHH
Q 044593          183 KFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGR  219 (335)
Q Consensus       183 ~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~  219 (335)
                      .++++|+.+|. ++++++++-|.+++++...|-+++.
T Consensus       139 ~v~~l~~~~G~-~~~v~E~~~d~~ta~~gsgPA~~~~  174 (260)
T PTZ00431        139 KVIDIFSACGI-IQEIKEKDMDIATAISGCGPAYVFL  174 (260)
T ss_pred             HHHHHHHhCCc-EEEEChHHcchhhhhcCCHHHHHHH
Confidence            99999999995 7788888999999999988886654

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.74  E-value=2.2e-16  Score=148.47  Aligned_cols=169  Identities=15%  Similarity=0.192  Sum_probs=129.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhhcc-
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIP-  109 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~-  109 (335)
                      +||+|||+|.||..+|..|.++|++|++|||+++..+.+.+.|+....++.+++ +++|+||+|+|.+. +..++.... 
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~-~~aDvVi~~vp~~~~~~~vl~~~~~   80 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAA-AGAEFVITMLPNGDLVRSVLFGENG   80 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHH-hcCCEEEEecCCHHHHHHHHcCccc
Confidence            589999999999999999999999999999999887777777887777888777 79999999999985 677765321 


Q ss_pred             -ccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHH
Q 044593          110 -FQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDV  187 (335)
Q Consensus       110 -~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l  187 (335)
                       .+.++++++|+|++++.....+.+.+.+ ..+..|+. -|+.|.....  ..|...++.    +++   ++.+++++++
T Consensus        81 i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ld-apV~g~~~~a--~~g~l~~~~----gg~---~~~~~~~~p~  150 (296)
T PRK15461         81 VCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMD-VPVGRTSDNA--ITGTLLLLA----GGT---AEQVERATPI  150 (296)
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE-ccCCCCHHHH--HhCcEEEEE----CCC---HHHHHHHHHH
Confidence             2357889999999998776666665544 34577886 4888865432  256554553    444   4578889999


Q ss_pred             HHhcCCEEEEeChHHHHHHHHHhh
Q 044593          188 FAKEGCRMVEMSCFDHDKYAAGSQ  211 (335)
Q Consensus       188 ~~~~G~~v~~~~~~eHD~~~A~~s  211 (335)
                      |+.+|.+++++.+..-...+.++.
T Consensus       151 l~~~g~~~~~~g~~G~g~~~Kl~~  174 (296)
T PRK15461        151 LMAMGNELINAGGPGMGIRVKLIN  174 (296)
T ss_pred             HHHHcCCeEeeCCCCHHHHHHHHH
Confidence            999999999998765555566554

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.73  E-value=2.2e-16  Score=148.26  Aligned_cols=171  Identities=18%  Similarity=0.225  Sum_probs=129.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH---h
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL---K  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl---~  106 (335)
                      +|||+|||+|.||..+|..|.+.|++|++|||+++..+.+.+.|+....+..+++ .++|+||+|+|... +..++   .
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~-~~~d~vi~~vp~~~~~~~v~~~~~   80 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVA-EQCDVIITMLPNSPHVKEVALGEN   80 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHH-hcCCEEEEeCCCHHHHHHHHcCcc
Confidence            4789999999999999999999999999999998877767777887777888887 79999999999765 45555   2


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                      .+. +.++++++|+|+++++....+.+.+.+. .+.+|+. +|++|.....  ..+...++.    +++   .+.++.+.
T Consensus        81 ~~~-~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d-~pv~g~~~~a--~~g~l~i~~----gg~---~~~~~~~~  149 (296)
T PRK11559         81 GII-EGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD-APVSGGEPKA--IDGTLSVMV----GGD---KAIFDKYY  149 (296)
T ss_pred             hHh-hcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE-cCCCCCHHHH--hhCcEEEEE----CCC---HHHHHHHH
Confidence            343 4578999999999998766666665543 3567776 4888876421  234444442    443   45788899


Q ss_pred             HHHHhcCCEEEEeChHHHHHHHHHhhhh
Q 044593          186 DVFAKEGCRMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~l  213 (335)
                      ++++.+|.+++++.+......+.++..+
T Consensus       150 ~~l~~~~~~~~~~g~~g~a~~~Kl~~n~  177 (296)
T PRK11559        150 DLMKAMAGSVVHTGDIGAGNVTKLANQV  177 (296)
T ss_pred             HHHHHhcCCeEEeCCcCHHHHHHHHHHH
Confidence            9999999999988766555666665543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.73  E-value=1.6e-15  Score=143.48  Aligned_cols=165  Identities=15%  Similarity=0.118  Sum_probs=121.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-----------HhCCC-------------ceecChhhHhh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-----------QQLNA-------------PFFADLNDLCE   86 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-----------~~~g~-------------~~~~~~~~~~~   86 (335)
                      +|+|+|||+|.||+++|..|.++|++|++||++++..+.+           .+.|.             ..+.++.+++ 
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~-   80 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV-   80 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh-
Confidence            3689999999999999999999999999999998655432           23342             3556777776 


Q ss_pred             cCCCEEEEecCch--hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcc
Q 044593           87 LHPDVVLLSTSIL--STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPF  164 (335)
Q Consensus        87 ~~aDvVIlavp~~--~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~  164 (335)
                      ++||+||.|+|..  ....++.++. ...+++.+|.  +|++......+.+.+....++++.|||.++...     . ..
T Consensus        81 ~~ad~Vi~avpe~~~~k~~~~~~l~-~~~~~~~ii~--ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~-----~-lv  151 (308)
T PRK06129         81 ADADYVQESAPENLELKRALFAELD-ALAPPHAILA--SSTSALLASAFTEHLAGRERCLVAHPINPPYLI-----P-VV  151 (308)
T ss_pred             CCCCEEEECCcCCHHHHHHHHHHHH-HhCCCcceEE--EeCCCCCHHHHHHhcCCcccEEEEecCCCcccC-----c-eE
Confidence            7999999999987  3566777774 3455555553  445556667777777655679999999875421     1 11


Q ss_pred             eecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593          165 MYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG  209 (335)
Q Consensus       165 i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~  209 (335)
                      .+    ++.+.++++.++.+.++++.+|.++++++++.|+.+...
T Consensus       152 ei----v~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nr  192 (308)
T PRK06129        152 EV----VPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNR  192 (308)
T ss_pred             EE----eCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHH
Confidence            22    344455677889999999999999999998888865443

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.73  E-value=2.7e-16  Score=143.64  Aligned_cols=176  Identities=16%  Similarity=0.153  Sum_probs=140.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~  107 (335)
                      .+.++||+||+|.||..++..|.++||.|++|||+.+.++...+.|.....++.|++ +.+|+||.++|... +.+++..
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVa-e~sDvvitmv~~~~~v~~v~~g  111 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVA-EDSDVVITMVPNPKDVKDVLLG  111 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHH-hhcCEEEEEcCChHhhHHHhcC
Confidence            457899999999999999999999999999999999999889999999999999998 89999999999875 5566543


Q ss_pred             cc--ccccCCccEE-EEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHH
Q 044593          108 IP--FQRLKRSTLF-VDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDK  183 (335)
Q Consensus       108 l~--~~~l~~~~iV-vd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~  183 (335)
                      -.  ...++++... +|.++++......+.+... .+.+|+- -|+.|...+.+  .|.-.++.    +++   ++.+++
T Consensus       112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vD-APVSGg~~~A~--~G~Ltima----gGd---e~~~~~  181 (327)
T KOG0409|consen  112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVD-APVSGGVKGAE--EGTLTIMA----GGD---EALFEA  181 (327)
T ss_pred             CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEe-ccccCCchhhh--cCeEEEEe----cCc---HHHHHH
Confidence            21  1234566666 8999999888777766553 4567876 49999886542  56655653    443   567889


Q ss_pred             HHHHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          184 FLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       184 v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      ...+|+.+|.+++++..--....+.+++++..
T Consensus       182 ~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~  213 (327)
T KOG0409|consen  182 ASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLL  213 (327)
T ss_pred             HHHHHHHhcceEEEecccCchHHHHHHHHHHH
Confidence            99999999999999988877778888776654

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.72  E-value=9.9e-16  Score=144.19  Aligned_cols=170  Identities=14%  Similarity=0.157  Sum_probs=126.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhh--cCCCEEEEecCchhHHHHHhhcc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCE--LHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~--~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      |||+|||+|.||+.+|..|.++|++|.+|||+++..+.+.+.|.....++.++..  ..+|+||+|+|...+.++++++.
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~   80 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA   80 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence            5899999999999999999999999999999998877677777766666655431  46899999999999899999985


Q ss_pred             ccccCCccEEEEcCCCCch-HHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHH
Q 044593          110 FQRLKRSTLFVDVLSVKEF-PRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVF  188 (335)
Q Consensus       110 ~~~l~~~~iVvd~~SvK~~-~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~  188 (335)
                       +.++++.+|+|++++... ..+..+.....+.+|+.+ |+.|...+.  ..|. .++    ++++   ++.++.++++|
T Consensus        81 -~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda-~vsGg~~~a--~~G~-~~~----~gG~---~~~~~~~~~~l  148 (298)
T TIGR00872        81 -PTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDC-GTSGGVWGR--ERGY-CFM----IGGD---GEAFARAEPLF  148 (298)
T ss_pred             -hhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEec-CCCCCHHHH--hcCC-eee----eCCC---HHHHHHHHHHH
Confidence             678899999999887633 333333333456789886 677655432  2453 333    2444   45778899999


Q ss_pred             HhcCC---EEEEeChHHHHHHHHHhhhh
Q 044593          189 AKEGC---RMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       189 ~~~G~---~v~~~~~~eHD~~~A~~s~l  213 (335)
                      +.++.   .++++.+..-...+..+.+.
T Consensus       149 ~~~~~~~~~~~~~G~~G~~~~~K~~~n~  176 (298)
T TIGR00872       149 ADVAPEEQGYLYCGPCGSGHFVKMVHNG  176 (298)
T ss_pred             HHhcCcCCCEEEECCccHhHHHHHHHHH
Confidence            99986   47888776555566665543

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.72  E-value=3.7e-16  Score=155.25  Aligned_cols=174  Identities=14%  Similarity=0.124  Sum_probs=132.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC----CCc---eecChhhHhhcC---CCEEEEecCc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL----NAP---FFADLNDLCELH---PDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~----g~~---~~~~~~~~~~~~---aDvVIlavp~   98 (335)
                      ...++|||||+|.||..||+.|.++|++|++|||+++..+...+.    |..   ...++.+++ +.   +|+||+|+|.
T Consensus         4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v-~~l~~~dvIi~~v~~   82 (493)
T PLN02350          4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFV-LSIQKPRSVIILVKA   82 (493)
T ss_pred             CCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHH-hcCCCCCEEEEECCC
Confidence            356789999999999999999999999999999998766544332    543   456788876 54   9999999998


Q ss_pred             hh-HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChh
Q 044593           99 LS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEE  176 (335)
Q Consensus        99 ~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~  176 (335)
                      +. +.+++..+. +.+++|.+|+|++++.......+.+.+ ..+++|+.+ |+.|.+.+..  .|. .++    ++++  
T Consensus        83 ~~aV~~Vi~gl~-~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~flda-pVSGG~~gA~--~G~-~im----~GG~--  151 (493)
T PLN02350         83 GAPVDQTIKALS-EYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGM-GVSGGEEGAR--NGP-SLM----PGGS--  151 (493)
T ss_pred             cHHHHHHHHHHH-hhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeC-CCcCCHHHhc--CCC-eEE----ecCC--
Confidence            86 577877774 678899999999988654444444443 357889985 9999886532  564 444    2444  


Q ss_pred             HHHHHHHHHHHHHhcCCE------EEEeChHHHHHHHHHhhhhHH
Q 044593          177 RIKRVDKFLDVFAKEGCR------MVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       177 ~~~~~~~v~~l~~~~G~~------v~~~~~~eHD~~~A~~s~lph  215 (335)
                       ++.+++++++|+.+|.+      ++++.+.-....+.++++..-
T Consensus       152 -~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~  195 (493)
T PLN02350        152 -FEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIE  195 (493)
T ss_pred             -HHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHH
Confidence             46789999999999965      888988777778888775533

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.71  E-value=1.2e-15  Score=143.81  Aligned_cols=171  Identities=15%  Similarity=0.159  Sum_probs=132.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcC---CCEEEEecCch-hHHHHHhh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELH---PDVVLLSTSIL-STQSVLKS  107 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~---aDvVIlavp~~-~~~~vl~~  107 (335)
                      |||+|||+|.||..+|..|.++|++|++|||+++..+.+.+.|+....++.+++ +.   +|+||+|+|.. .+.+++..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~-~~~~~~dvvi~~v~~~~~~~~v~~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELV-AKLPAPRVVWLMVPAGEITDATIDE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHH-hhcCCCCEEEEEecCCcHHHHHHHH
Confidence            589999999999999999999999999999999877767778888777888776 44   69999999998 67888887


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD  186 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~  186 (335)
                      +. +.++++++|+|++++.......+.+.+ ..+..|+. -|+.|...+..  .|. .++    ++++   .+.++.+++
T Consensus        80 l~-~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d-apvsG~~~~a~--~g~-~~~----~gG~---~~~~~~~~~  147 (301)
T PRK09599         80 LA-PLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD-VGTSGGVWGLE--RGY-CLM----IGGD---KEAVERLEP  147 (301)
T ss_pred             HH-hhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe-CCCCcCHHHHh--cCC-eEE----ecCC---HHHHHHHHH
Confidence            74 568899999999887765554444433 35678886 69999865432  454 344    2444   457788999


Q ss_pred             HHHhcCC----EEEEeChHHHHHHHHHhhhhHH
Q 044593          187 VFAKEGC----RMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       187 l~~~~G~----~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      +++.++.    +++++.+..-...+.++.+...
T Consensus       148 ~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~  180 (301)
T PRK09599        148 IFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIE  180 (301)
T ss_pred             HHHHHcccccCCeEeECCCcHHHHHHHHHHHHH
Confidence            9999998    7899988766666776654433

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.71  E-value=3.6e-16  Score=145.72  Aligned_cols=174  Identities=10%  Similarity=0.135  Sum_probs=131.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC----CeEEEEcCCCCc-HHHH-HhC-CCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH----HTLLVHSRSDHS-PAVR-QQL-NAPFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G----~~V~~~dr~~~~-~~~a-~~~-g~~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      |+||+|||+|+||++++..|.++|    ++|++|++++.. .+.. .+. ++....+..+++ .++|+||+|+|+..+.+
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~-~~aDvVilavpp~~~~~   79 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIF-TKCDHSFICVPPLAVLP   79 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHH-hhCCEEEEecCHHHHHH
Confidence            468999999999999999999988    689999987532 2222 223 233456667776 78999999999999999


Q ss_pred             HHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHH
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDK  183 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~  183 (335)
                      ++.++. +.++++++|+++...  ...+.+++.++. .+++...|......+    .|...+.     ..+..+.+..+.
T Consensus        80 vl~~l~-~~l~~~~~ivS~~aG--i~~~~l~~~~~~-~~vvR~MPN~~~~~g----~g~t~~~-----~~~~~~~~~~~~  146 (277)
T PRK06928         80 LLKDCA-PVLTPDRHVVSIAAG--VSLDDLLEITPG-LQVSRLIPSLTSAVG----VGTSLVA-----HAETVNEANKSR  146 (277)
T ss_pred             HHHHHH-hhcCCCCEEEEECCC--CCHHHHHHHcCC-CCEEEEeCccHHHHh----hhcEEEe-----cCCCCCHHHHHH
Confidence            999995 567788888877543  445678888764 478888998876655    4543332     123334566788


Q ss_pred             HHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHH
Q 044593          184 FLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGR  219 (335)
Q Consensus       184 v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~  219 (335)
                      ++++|+.+| +++++++++-|.++|+++..|-.++.
T Consensus       147 v~~l~~~~G-~~~~v~E~~~d~~tal~gsgPA~~~~  181 (277)
T PRK06928        147 LEETLSHFS-HVMTIREENMDIASNLTSSSPGFIAA  181 (277)
T ss_pred             HHHHHHhCC-CEEEEchhhCceeeeeecCHHHHHHH
Confidence            999999999 47788888999999999999887654

>PRK07680 late competence protein ComER; Validated

Probab=99.71  E-value=6.5e-16  Score=143.64  Aligned_cols=171  Identities=13%  Similarity=0.173  Sum_probs=122.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC----eEEEEcCCCCcHHHHHh-C-CCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH----TLLVHSRSDHSPAVRQQ-L-NAPFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~----~V~~~dr~~~~~~~a~~-~-g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      |+|+|||+|.||++++..|.++|+    +|++|+|+++..+...+ . |+....+..+++ .++|+||+|+|+..+.+++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~~aDiVilav~p~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVI-SQSDLIFICVKPLDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHH-HhCCEEEEecCHHHHHHHH
Confidence            589999999999999999999983    79999999866543333 3 666667777776 7899999999999999999


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                      +++. +.++++++|+++++.  ...+.+++.++.  ..+..+|... ..   ...|...+..    + +..+.+..+.+.
T Consensus        80 ~~l~-~~l~~~~~iis~~ag--~~~~~L~~~~~~--~~~r~~p~~~-~~---~~~G~t~~~~----g-~~~~~~~~~~~~  145 (273)
T PRK07680         80 QKLA-PHLTDEHCLVSITSP--ISVEQLETLVPC--QVARIIPSIT-NR---ALSGASLFTF----G-SRCSEEDQQKLE  145 (273)
T ss_pred             HHHH-hhcCCCCEEEEECCC--CCHHHHHHHcCC--CEEEECCChH-HH---HhhccEEEee----C-CCCCHHHHHHHH
Confidence            9985 678888899999764  235677776653  3556666321 11   1145433321    2 122334568899


Q ss_pred             HHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHH
Q 044593          186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMG  218 (335)
Q Consensus       186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la  218 (335)
                      ++|+.+| .+++++++..|...++....|-+++
T Consensus       146 ~ll~~~G-~~~~i~e~~~~~~~~l~gs~pa~~~  177 (273)
T PRK07680        146 RLFSNIS-TPLVIEEDITRVSSDIVSCGPAFFS  177 (273)
T ss_pred             HHHHcCC-CEEEEChHhcchhhhhccchHHHHH
Confidence            9999999 5778887777777776665555443

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.70  E-value=3.8e-16  Score=143.99  Aligned_cols=163  Identities=17%  Similarity=0.229  Sum_probs=117.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC---eEEEEcCCCCcHHHHH-hC-CCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH---TLLVHSRSDHSPAVRQ-QL-NAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~---~V~~~dr~~~~~~~a~-~~-g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      |||+|||+|+||+++++.|.+.|+   .+.+++|+++..+... .. ++....+..+++ .++|+||+|+|++.+.+++.
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~-~~aDvVilav~p~~~~~vl~   79 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVV-DRSDVVFLAVRPQIAEEVLR   79 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHH-HhCCEEEEEeCHHHHHHHHH
Confidence            589999999999999999999886   3578999877654333 34 456667777777 78999999999999999998


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD  186 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~  186 (335)
                      ++.   ++++++|+++.+.  ...+.+++.++.+...+..||+.....+    .|.. .++    +.+       +.+++
T Consensus        80 ~l~---~~~~~~vis~~ag--~~~~~l~~~~~~~~~~~r~~P~~~~a~~----~g~t-~~~----~~~-------~~~~~  138 (258)
T PRK06476         80 ALR---FRPGQTVISVIAA--TDRAALLEWIGHDVKLVRAIPLPFVAER----KGVT-AIY----PPD-------PFVAA  138 (258)
T ss_pred             Hhc---cCCCCEEEEECCC--CCHHHHHHHhCCCCCEEEECCCChhhhC----CCCe-Eec----CCH-------HHHHH
Confidence            873   4577777776433  3346666666554567777887443322    2332 222    221       47789


Q ss_pred             HHHhcCCEEEEeChHHHHHHHHHhhhhHHH
Q 044593          187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHT  216 (335)
Q Consensus       187 l~~~~G~~v~~~~~~eHD~~~A~~s~lph~  216 (335)
                      +|+.+|..+...+++++|.+.++.++...+
T Consensus       139 l~~~lG~~~~~~~e~~~d~~~a~~s~~a~~  168 (258)
T PRK06476        139 LFDALGTAVECDSEEEYDLLAAASALMATY  168 (258)
T ss_pred             HHHhcCCcEEECChHhccceeehhccHHHH
Confidence            999999887777899999998887654443

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.70  E-value=5.9e-15  Score=141.03  Aligned_cols=174  Identities=16%  Similarity=0.183  Sum_probs=128.1

Q ss_pred             CeEEEEcccHH--------------------HHHHHHHHHHcCCeEEEEcCCCC-----cHHHHHhCCCceecChhhHhh
Q 044593           32 LKIAVIGFGNF--------------------GQFLAKAFARHHHTLLVHSRSDH-----SPAVRQQLNAPFFADLNDLCE   86 (335)
Q Consensus        32 ~kI~IIG~G~m--------------------G~siA~~L~~~G~~V~~~dr~~~-----~~~~a~~~g~~~~~~~~~~~~   86 (335)
                      |||.|.|+|+-                    |..+|..|.++||+|++||++++     ..+.+.+.|+...++..+++ 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa-   79 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAA-   79 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHH-
Confidence            68889998886                    89999999999999999999986     33446677887777887777 


Q ss_pred             cCCCEEEEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHH-HHHHhhCCC---CCceEeccccC--CCCCccccc
Q 044593           87 LHPDVVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPR-NLFLKYLPQ---DFDILCTHPMF--GPESAKSSW  159 (335)
Q Consensus        87 ~~aDvVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~-~~l~~~l~~---~~~~v~~HPma--G~~~~~~~~  159 (335)
                      .++|+||+|+|... +.+++..+. +.++++++|+|+++++.... +.+.+.++.   ...+...||+.  |.+.     
T Consensus        80 ~~ADvVIlaVP~~~~v~~Vl~~L~-~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~-----  153 (342)
T PRK12557         80 KHGEIHILFTPFGKKTVEIAKNIL-PHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQ-----  153 (342)
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHH-hhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccccc-----
Confidence            89999999999998 889998885 67889999999999987665 566666542   23566677764  3322     


Q ss_pred             CCCcceeccc-ccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHH
Q 044593          160 ENLPFMYDKV-RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTM  217 (335)
Q Consensus       160 ~g~~~i~~~~-~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~l  217 (335)
                       +...+++.. .......+++.+++++++|+.+|.+++++++.    ....+++++|++
T Consensus       154 -g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g----~~~~vk~~~n~l  207 (342)
T PRK12557        154 -HGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPAD----VVSAVADMGSLV  207 (342)
T ss_pred             -chheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHH----HHHHHHHHHHHH
Confidence             111222211 01112234567899999999999999999963    466677777765

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.68  E-value=1.8e-15  Score=138.12  Aligned_cols=176  Identities=13%  Similarity=0.139  Sum_probs=128.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC----eEEEEcCC-CCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH----TLLVHSRS-DHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~----~V~~~dr~-~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      |+.+||+|||+|.||.+++..|.+.|+    ++++++++ ++..+ .+...++..+.+..+++ +++|+||+|||+....
T Consensus         2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DiViiavp~~~~~   80 (245)
T PRK07634          2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHV-TSVDTIVLAMPPSAHE   80 (245)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHH-hcCCEEEEecCHHHHH
Confidence            456899999999999999999998863    37778875 44443 33446776667777777 7899999999999999


Q ss_pred             HHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHH
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVD  182 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~  182 (335)
                      ++++++. +.++ +++|++++..  ...+.+++.++.+..++..||.+..+.+    .|.+.+...     ...+++..+
T Consensus        81 ~v~~~l~-~~~~-~~~vis~~~g--i~~~~l~~~~~~~~~v~r~~Pn~a~~v~----~g~~~~~~~-----~~~~~~~~~  147 (245)
T PRK07634         81 ELLAELS-PLLS-NQLVVTVAAG--IGPSYLEERLPKGTPVAWIMPNTAAEIG----KSISLYTMG-----QSVNETHKE  147 (245)
T ss_pred             HHHHHHH-hhcc-CCEEEEECCC--CCHHHHHHHcCCCCeEEEECCcHHHHHh----cCCeEEeeC-----CCCCHHHHH
Confidence            9999985 5555 4566666432  3446778778765678888997776654    455544421     223456778


Q ss_pred             HHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHH
Q 044593          183 KFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGR  219 (335)
Q Consensus       183 ~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~  219 (335)
                      .++++|+.+|..+ ++++++.|.+.|++...|-.+..
T Consensus       148 ~v~~lf~~~G~~~-~~~e~~~~~~~a~~gs~pa~~~~  183 (245)
T PRK07634        148 TLQLILKGIGTSQ-LCTEEEVHQLTAVTGSAPAFLYY  183 (245)
T ss_pred             HHHHHHHhCCCEE-EECHHHcchHHhhhcchHHHHHH
Confidence            9999999999765 57888888888887777665443

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.68  E-value=2.3e-15  Score=149.38  Aligned_cols=170  Identities=15%  Similarity=0.136  Sum_probs=128.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC----C--CceecChhhHhhc---CCCEEEEecCch-h
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL----N--APFFADLNDLCEL---HPDVVLLSTSIL-S  100 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~----g--~~~~~~~~~~~~~---~aDvVIlavp~~-~  100 (335)
                      +.+|+|||+|.||+++|..|.++||+|++|||+++..+...+.    |  +..+.++++++ .   ++|+||+++|+. .
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v-~~l~~~d~Iil~v~~~~~   79 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELV-NSLKKPRKVILLIKAGEA   79 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHH-hcCCCCCEEEEEeCChHH
Confidence            3589999999999999999999999999999999876544432    5  33567788876 4   589999997665 5


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCch-HHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHH
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKEF-PRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIK  179 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~~-~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~  179 (335)
                      +.++++++. +.+++|.+|+|++++... ..+...+....+++|+.+ |+.|.+.+..  .|. .++    ++++   ++
T Consensus        80 v~~vi~~l~-~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~flda-pVSGG~~gA~--~G~-~lm----~GG~---~~  147 (470)
T PTZ00142         80 VDETIDNLL-PLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGM-GVSGGEEGAR--YGP-SLM----PGGN---KE  147 (470)
T ss_pred             HHHHHHHHH-hhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcC-CCCCCHHHHh--cCC-EEE----EeCC---HH
Confidence            788998885 689999999999877433 333333444567889885 9999876432  454 344    2444   46


Q ss_pred             HHHHHHHHHHhcCCE------EEEeChHHHHHHHHHhhhh
Q 044593          180 RVDKFLDVFAKEGCR------MVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       180 ~~~~v~~l~~~~G~~------v~~~~~~eHD~~~A~~s~l  213 (335)
                      .++.++++|+.++.+      +.++.+.-....+.++++.
T Consensus       148 a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~  187 (470)
T PTZ00142        148 AYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNG  187 (470)
T ss_pred             HHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHH
Confidence            789999999999988      7888887666677777644

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.67  E-value=5.4e-14  Score=133.16  Aligned_cols=168  Identities=14%  Similarity=0.117  Sum_probs=123.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC---------CceecChhhHhhcCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN---------APFFADLNDLCELHP   89 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g---------~~~~~~~~~~~~~~a   89 (335)
                      ..+||+|||+|.||..||..|..+|++|++||++++..+.+.+           .|         +...+++++++ .+|
T Consensus         6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av-~~a   84 (321)
T PRK07066          6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACV-ADA   84 (321)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHh-cCC
Confidence            4578999999999999999999999999999999865432211           22         23456777777 899


Q ss_pred             CEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceec
Q 044593           90 DVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYD  167 (335)
Q Consensus        90 DvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~  167 (335)
                      |+||-|+|...  -..++.++. ..++++++|...+|.  .....+.+.+...-+|+++||...+..-       | +++
T Consensus        85 DlViEavpE~l~vK~~lf~~l~-~~~~~~aIlaSnTS~--l~~s~la~~~~~p~R~~g~HffnP~~~~-------p-LVE  153 (321)
T PRK07066         85 DFIQESAPEREALKLELHERIS-RAAKPDAIIASSTSG--LLPTDFYARATHPERCVVGHPFNPVYLL-------P-LVE  153 (321)
T ss_pred             CEEEECCcCCHHHHHHHHHHHH-HhCCCCeEEEECCCc--cCHHHHHHhcCCcccEEEEecCCccccC-------c-eEE
Confidence            99999999875  456778884 568888866655553  4556677766655689999998776642       2 221


Q ss_pred             ccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhh
Q 044593          168 KVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQ  211 (335)
Q Consensus       168 ~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s  211 (335)
                        +++++.++++.++.+.++++.+|..++.+..+....+..-++
T Consensus       154 --Vv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~  195 (321)
T PRK07066        154 --VLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLL  195 (321)
T ss_pred             --EeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHH
Confidence              234566778899999999999999998886555455444433

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.67  E-value=3.6e-14  Score=142.42  Aligned_cols=165  Identities=15%  Similarity=0.102  Sum_probs=119.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-------------------CC-CceecChhhHhhcCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-------------------LN-APFFADLNDLCELHPD   90 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-------------------~g-~~~~~~~~~~~~~~aD   90 (335)
                      .|||+|||+|.||++||..|.++|++|++||++++..+...+                   .| +...+++.+++ ++||
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~-~~aD   82 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAV-AGAD   82 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHh-cCCC
Confidence            569999999999999999999999999999999876542211                   12 45567777777 8999


Q ss_pred             EEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecc
Q 044593           91 VVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDK  168 (335)
Q Consensus        91 vVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~  168 (335)
                      +||.|+|.+.  ...++.++. ..++++++|...+|.  .....+.+.+....+++..||+.++...      ..+.+  
T Consensus        83 ~Vieavpe~~~vk~~l~~~l~-~~~~~~~iI~SsTsg--i~~s~l~~~~~~~~r~~~~hP~nP~~~~------~Lvev--  151 (495)
T PRK07531         83 WIQESVPERLDLKRRVLAEID-AAARPDALIGSSTSG--FLPSDLQEGMTHPERLFVAHPYNPVYLL------PLVEL--  151 (495)
T ss_pred             EEEEcCcCCHHHHHHHHHHHH-hhCCCCcEEEEcCCC--CCHHHHHhhcCCcceEEEEecCCCcccC------ceEEE--
Confidence            9999999985  455677774 456777665444333  3345666666655678999999866532      11122  


Q ss_pred             cccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593          169 VRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG  209 (335)
Q Consensus       169 ~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~  209 (335)
                        ++++.++++.++.+.++++.+|.+++++..+-+..+...
T Consensus       152 --v~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nr  190 (495)
T PRK07531        152 --VGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVGDR  190 (495)
T ss_pred             --cCCCCCCHHHHHHHHHHHHHcCCEEEeecCCCcchhHHH
Confidence              355556678899999999999999998875544444443

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.66  E-value=4.7e-15  Score=147.10  Aligned_cols=169  Identities=14%  Similarity=0.136  Sum_probs=126.2

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-----CCceecChhhHhh--cCCCEEEEecCc-hhHHHH
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-----NAPFFADLNDLCE--LHPDVVLLSTSI-LSTQSV  104 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-----g~~~~~~~~~~~~--~~aDvVIlavp~-~~~~~v  104 (335)
                      +|+|||+|.||+.||..|.++|++|++|||+++..+.+.+.     ++....++.+++.  +.+|+||+|+|+ ..+.++
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            48999999999999999999999999999999877655544     2445566666541  368999999999 467889


Q ss_pred             HhhccccccCCccEEEEcCCCCchH-HHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHH
Q 044593          105 LKSIPFQRLKRSTLFVDVLSVKEFP-RNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDK  183 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~SvK~~~-~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~  183 (335)
                      +.++. +.+++|.+|+|+++++... .+..++....+++|+.+ |+.|.+.+..  .|. .++    ++++   ++.++.
T Consensus        81 i~~l~-~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvda-pVsGG~~gA~--~G~-~im----~GG~---~~a~~~  148 (467)
T TIGR00873        81 INQLL-PLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGS-GVSGGEEGAR--KGP-SIM----PGGS---AEAWPL  148 (467)
T ss_pred             HHHHH-hhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcC-CCCCCHHHHh--cCC-cCC----CCCC---HHHHHH
Confidence            98885 6789999999999876433 33334444467889986 7777665432  454 333    2444   467899


Q ss_pred             HHHHHHhcCCEE------EEeChHHHHHHHHHhhhh
Q 044593          184 FLDVFAKEGCRM------VEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       184 v~~l~~~~G~~v------~~~~~~eHD~~~A~~s~l  213 (335)
                      ++++|+.++.++      .++.+.--...+.++++.
T Consensus       149 ~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~  184 (467)
T TIGR00873       149 VAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNG  184 (467)
T ss_pred             HHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHH
Confidence            999999999874      788887666677777654

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.65  E-value=5.9e-15  Score=139.61  Aligned_cols=161  Identities=16%  Similarity=0.132  Sum_probs=116.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----CC--------------CceecChhhHhhcCCCE
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----LN--------------APFFADLNDLCELHPDV   91 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----~g--------------~~~~~~~~~~~~~~aDv   91 (335)
                      .+||+|||+|.||+++|..|.++|++|++||++++..+.+.+     .|              +..+++..+.+ ++||+
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~aDl   82 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAV-SGADL   82 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHh-ccCCE
Confidence            578999999999999999999999999999999876543332     12              23445666666 79999


Q ss_pred             EEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceeccc
Q 044593           92 VLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKV  169 (335)
Q Consensus        92 VIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~  169 (335)
                      ||+|+|++.  ...++.++. +.++++++|+..++.  .....+.+.++...+|+++||...+....      .+.+   
T Consensus        83 Vi~av~~~~~~~~~v~~~l~-~~~~~~~ii~s~tsg--~~~~~l~~~~~~~~~~ig~h~~~p~~~~~------l~~i---  150 (311)
T PRK06130         83 VIEAVPEKLELKRDVFARLD-GLCDPDTIFATNTSG--LPITAIAQAVTRPERFVGTHFFTPADVIP------LVEV---  150 (311)
T ss_pred             EEEeccCcHHHHHHHHHHHH-HhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEEccCCCCccCc------eEEE---
Confidence            999999875  677888884 556777777544333  23456766666556799999977665321      1122   


Q ss_pred             ccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHH
Q 044593          170 RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDK  205 (335)
Q Consensus       170 ~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~  205 (335)
                       ++++.++++.++.+.++++.+|..++.+.++....
T Consensus       151 -~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~  185 (311)
T PRK06130        151 -VRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF  185 (311)
T ss_pred             -eCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence             23444567788999999999999999887654443

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.65  E-value=6.3e-15  Score=137.61  Aligned_cols=160  Identities=16%  Similarity=0.089  Sum_probs=116.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHH-----------HHhCC-------------CceecChhhHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAV-----------RQQLN-------------APFFADLNDLC   85 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~-----------a~~~g-------------~~~~~~~~~~~   85 (335)
                      .++||+|||+|.||+++|..|.++|++|+++|++++..+.           +.+.|             +..+++.++ +
T Consensus         2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~   80 (282)
T PRK05808          2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-L   80 (282)
T ss_pred             CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence            3568999999999999999999999999999999876532           22333             223456554 4


Q ss_pred             hcCCCEEEEecCchhH--HHHHhhccccccCCccEE-EEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           86 ELHPDVVLLSTSILST--QSVLKSIPFQRLKRSTLF-VDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        86 ~~~aDvVIlavp~~~~--~~vl~~l~~~~l~~~~iV-vd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                       ++||+||+|+|.+..  .+++.++. +.++++++| +++++.+   ...+.+.++...+++++||+..+...+    +.
T Consensus        81 -~~aDlVi~av~e~~~~k~~~~~~l~-~~~~~~~il~s~ts~~~---~~~la~~~~~~~r~ig~h~~~P~~~~~----~v  151 (282)
T PRK05808         81 -KDADLVIEAATENMDLKKKIFAQLD-EIAKPEAILATNTSSLS---ITELAAATKRPDKVIGMHFFNPVPVMK----LV  151 (282)
T ss_pred             -ccCCeeeecccccHHHHHHHHHHHH-hhCCCCcEEEECCCCCC---HHHHHHhhCCCcceEEeeccCCcccCc----cE
Confidence             799999999997653  68899985 678899988 4455543   346666665556799999999777542    22


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHH
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKY  206 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~  206 (335)
                      . +     +.++.++.+..+.+.++++.+|..++.+. +.+..+
T Consensus       152 e-v-----~~g~~t~~e~~~~~~~l~~~lGk~pv~~~-d~~g~i  188 (282)
T PRK05808        152 E-I-----IRGLATSDATHEAVEALAKKIGKTPVEVK-NAPGFV  188 (282)
T ss_pred             E-E-----eCCCCCCHHHHHHHHHHHHHcCCeeEEec-CccChH
Confidence            1 2     23445667888999999999999988883 443333

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.64  E-value=8e-15  Score=137.33  Aligned_cols=153  Identities=15%  Similarity=0.136  Sum_probs=112.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC-------------CceecChhhHhhc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN-------------APFFADLNDLCEL   87 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g-------------~~~~~~~~~~~~~   87 (335)
                      +||+|||+|.||..+|..|.++|++|++||++++..+.+.+           .|             +..+++..+.+ +
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~-~   80 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV-A   80 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh-c
Confidence            58999999999999999999999999999999876654321           11             23456666666 8


Q ss_pred             CCCEEEEecCchh--HHHHHhhccccccCCccEEE-EcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcc
Q 044593           88 HPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFV-DVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPF  164 (335)
Q Consensus        88 ~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVv-d~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~  164 (335)
                      +||+||.|+|.+.  ...++.++. +.++++++|+ +++++.  + ..+.+.+....++++.|+++.+..      +..+
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~-~~~~~~~il~~~tSt~~--~-~~l~~~~~~~~r~~g~h~~~Pv~~------~~Lv  150 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETAD-AHAPAECYIATNTSTMS--P-TEIASFTKRPERVIAMHFFNPVHK------MKLV  150 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHH-hhCCCCcEEEEcCCCCC--H-HHHHhhcCCcccEEEEecCCCccc------CceE
Confidence            9999999999886  346677774 5678888774 555542  2 456565554457899999953332      1112


Q ss_pred             eecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          165 MYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       165 i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                      .+    ++++.++++.++.++++++.+|.+++++.
T Consensus       151 e~----v~g~~t~~~~~~~~~~~l~~lg~~~v~v~  181 (288)
T PRK09260        151 EL----IRGLETSDETVQVAKEVAEQMGKETVVVN  181 (288)
T ss_pred             EE----eCCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence            22    35555667889999999999999999885

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.62  E-value=1.7e-14  Score=135.53  Aligned_cols=154  Identities=13%  Similarity=0.097  Sum_probs=112.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-----------HhCC-------------CceecChhhHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-----------QQLN-------------APFFADLNDLC   85 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-----------~~~g-------------~~~~~~~~~~~   85 (335)
                      ..+||+|||+|.||.+||..|..+|++|++||++++..+.+           .+.|             +...++. +.+
T Consensus         3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~   81 (295)
T PLN02545          3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EEL   81 (295)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHh
Confidence            35689999999999999999999999999999998665421           1222             1233344 445


Q ss_pred             hcCCCEEEEecC--chhHHHHHhhccccccCCccEEE-EcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           86 ELHPDVVLLSTS--ILSTQSVLKSIPFQRLKRSTLFV-DVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        86 ~~~aDvVIlavp--~~~~~~vl~~l~~~~l~~~~iVv-d~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                       ++||+||.|+|  +.....++.++. +.++++++|+ +++++   ....+.+.+....++++.||+..+...+      
T Consensus        82 -~~aD~Vieav~e~~~~k~~v~~~l~-~~~~~~~il~s~tS~i---~~~~l~~~~~~~~r~~g~h~~~pp~~~~------  150 (295)
T PLN02545         82 -RDADFIIEAIVESEDLKKKLFSELD-RICKPSAILASNTSSI---SITRLASATQRPQQVIGMHFMNPPPIMK------  150 (295)
T ss_pred             -CCCCEEEEcCccCHHHHHHHHHHHH-hhCCCCcEEEECCCCC---CHHHHHhhcCCCcceEEEeccCCcccCc------
Confidence             79999999999  555677888885 5688888886 56655   2355666665556899999999887431      


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                      .+.+    ++++.++.+.++.++++++.+|..++++.
T Consensus       151 lvei----v~g~~t~~e~~~~~~~ll~~lG~~~~~~~  183 (295)
T PLN02545        151 LVEI----IRGADTSDEVFDATKALAERFGKTVVCSQ  183 (295)
T ss_pred             eEEE----eCCCCCCHHHHHHHHHHHHHcCCeeEEec
Confidence            1122    23445567788999999999999888764

>PLN02858 fructose-bisphosphate aldolase

Probab=99.59  E-value=4.9e-14  Score=155.10  Aligned_cols=174  Identities=7%  Similarity=0.019  Sum_probs=135.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH---
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL---  105 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl---  105 (335)
                      ...|||+||+|.||..||..|.++||+|++|||+++..+...+.|.....++.+++ ++||+||+|+|... +.+++   
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a-~~advVi~~l~~~~~v~~V~~g~   81 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAA-KDAAALVVVLSHPDQVDDVFFGD   81 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHH-hcCCEEEEEcCChHHHHHHHhch
Confidence            35689999999999999999999999999999999888777888988888999988 89999999999875 56676   


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCC-CC--CceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHH
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QD--FDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVD  182 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~--~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~  182 (335)
                      ..+. +.+++|.+|+|++++.....+.+.+.+. .+  ..|+.+ |+.|...+.  ..|...++.    +++   ++.++
T Consensus        82 ~g~~-~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa-PVsGg~~~A--~~G~L~imv----GG~---~~~~~  150 (1378)
T PLN02858         82 EGAA-KGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA-YVSKGMSDL--LNGKLMIIA----SGR---SDAIT  150 (1378)
T ss_pred             hhHH-hcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc-cCcCCHHHH--hcCCeEEEE----cCC---HHHHH
Confidence            2342 4578999999999988777766665543 44  568875 999877542  156544542    454   35688


Q ss_pred             HHHHHHHhcCCEEEEe-ChHHHHHHHHHhhhhHH
Q 044593          183 KFLDVFAKEGCRMVEM-SCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       183 ~v~~l~~~~G~~v~~~-~~~eHD~~~A~~s~lph  215 (335)
                      +++++|+.+|.+++++ .+.--...+.+++++-.
T Consensus       151 ~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~  184 (1378)
T PLN02858        151 RAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLE  184 (1378)
T ss_pred             HHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHH
Confidence            9999999999888764 76666677777766533

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.59  E-value=4.8e-13  Score=124.40  Aligned_cols=178  Identities=17%  Similarity=0.229  Sum_probs=129.9

Q ss_pred             CeEEEEcccHH--------------------HHHHHHHHHHcCCeEEEEcCCCCcH-----HHHHhCCCceecChhhHhh
Q 044593           32 LKIAVIGFGNF--------------------GQFLAKAFARHHHTLLVHSRSDHSP-----AVRQQLNAPFFADLNDLCE   86 (335)
Q Consensus        32 ~kI~IIG~G~m--------------------G~siA~~L~~~G~~V~~~dr~~~~~-----~~a~~~g~~~~~~~~~~~~   86 (335)
                      |||.|.|+|+-                    |..+|..|.++||+|++|||++...     +.+.+.|+...++..+++ 
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAA-   79 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAA-   79 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHH-
Confidence            78999999986                    8899999999999999999986533     346677988888888888 


Q ss_pred             cCCCEEEEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHHHH-HHhhC---CCCCceEeccccCCCCCcccccCC
Q 044593           87 LHPDVVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNL-FLKYL---PQDFDILCTHPMFGPESAKSSWEN  161 (335)
Q Consensus        87 ~~aDvVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~-l~~~l---~~~~~~v~~HPmaG~~~~~~~~~g  161 (335)
                      +++|+||+|+|... +.+++..+. +.+++|++|+|++++....... +++.+   ++++.+.+.||-+-|+...   ++
T Consensus        80 a~ADVVIL~LPd~aaV~eVl~GLa-a~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~---~~  155 (341)
T TIGR01724        80 KHGEIHVLFTPFGKGTFSIARTII-EHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQ---HG  155 (341)
T ss_pred             hCCCEEEEecCCHHHHHHHHHHHH-hcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCC---Cc
Confidence            89999999999886 568877764 5788999999999887654433 33323   3567899999988877632   11


Q ss_pred             Ccceecc-cccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          162 LPFMYDK-VRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       162 ~~~i~~~-~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      . +++.. +..+..-.+++.++++.++.++.|..++.++++--.-+.-+.|.++.
T Consensus       156 ~-~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~vta  209 (341)
T TIGR01724       156 H-YVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGSLVTA  209 (341)
T ss_pred             e-eeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHH
Confidence            1 12211 11233335568899999999999999999997543333333443333

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.59  E-value=1.9e-14  Score=125.75  Aligned_cols=151  Identities=19%  Similarity=0.240  Sum_probs=106.4

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC-------------CceecChhhHhhcC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN-------------APFFADLNDLCELH   88 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g-------------~~~~~~~~~~~~~~   88 (335)
                      ||+|||+|.||..||..+..+|++|.+||++++..+.+.+           .|             +..+++++++  .+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~--~~   78 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA--VD   78 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG--CT
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH--hh
Confidence            7999999999999999999999999999999876543221           12             2346777776  48


Q ss_pred             CCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCccee
Q 044593           89 PDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMY  166 (335)
Q Consensus        89 aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~  166 (335)
                      ||+||-|+|.+.  ..+++.++. ..+++++++...+|+  ..+..+.+.++..-+|++.|++..+...       | ++
T Consensus        79 adlViEai~E~l~~K~~~~~~l~-~~~~~~~ilasnTSs--l~i~~la~~~~~p~R~ig~Hf~~P~~~~-------~-lV  147 (180)
T PF02737_consen   79 ADLVIEAIPEDLELKQELFAELD-EICPPDTILASNTSS--LSISELAAALSRPERFIGMHFFNPPHLM-------P-LV  147 (180)
T ss_dssp             ESEEEE-S-SSHHHHHHHHHHHH-CCS-TTSEEEE--SS--S-HHHHHTTSSTGGGEEEEEE-SSTTT----------EE
T ss_pred             hheehhhccccHHHHHHHHHHHH-HHhCCCceEEecCCC--CCHHHHHhccCcCceEEEEecccccccC-------c-eE
Confidence            999999999875  578889885 678899999988766  4557777777666689999998755532       2 22


Q ss_pred             cccccCCChhHHHHHHHHHHHHHhcCCEEEEe
Q 044593          167 DKVRIGNDEERIKRVDKFLDVFAKEGCRMVEM  198 (335)
Q Consensus       167 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~  198 (335)
                      +  +++++.++++.++.+.++++.+|..++.+
T Consensus       148 E--vv~~~~T~~~~~~~~~~~~~~~gk~pv~v  177 (180)
T PF02737_consen  148 E--VVPGPKTSPETVDRVRALLRSLGKTPVVV  177 (180)
T ss_dssp             E--EEE-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred             E--EeCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence            1  13455677889999999999999998876

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.58  E-value=6.2e-14  Score=131.56  Aligned_cols=154  Identities=14%  Similarity=0.100  Sum_probs=110.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC-------------CceecChhhHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN-------------APFFADLNDLC   85 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g-------------~~~~~~~~~~~   85 (335)
                      ..+||+|||+|.||..+|..|..+|++|++||++++..+.+.+           .|             +...++.++ +
T Consensus         3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   81 (292)
T PRK07530          3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-L   81 (292)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-h
Confidence            4578999999999999999999999999999999876543221           23             234455554 4


Q ss_pred             hcCCCEEEEecCch--hHHHHHhhccccccCCccEEE-EcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           86 ELHPDVVLLSTSIL--STQSVLKSIPFQRLKRSTLFV-DVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        86 ~~~aDvVIlavp~~--~~~~vl~~l~~~~l~~~~iVv-d~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                       .+||+||.|+|.+  ....+++++. +.++++++|+ ++++..  + ..+.+.+....++++.|++..+...    .+.
T Consensus        82 -~~aD~Vieavpe~~~~k~~~~~~l~-~~~~~~~ii~s~ts~~~--~-s~la~~~~~~~r~~g~h~~~p~~~~----~~v  152 (292)
T PRK07530         82 -ADCDLVIEAATEDETVKRKIFAQLC-PVLKPEAILATNTSSIS--I-TRLASATDRPERFIGIHFMNPVPVM----KLV  152 (292)
T ss_pred             -cCCCEEEEcCcCCHHHHHHHHHHHH-hhCCCCcEEEEcCCCCC--H-HHHHhhcCCcccEEEeeccCCcccC----ceE
Confidence             7999999999986  3467778884 5688898887 455442  2 3566655444579999998844422    111


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                       .++     ....++++.++.+.++++.+|..++++.
T Consensus       153 -ei~-----~g~~t~~~~~~~~~~~~~~~gk~~v~~~  183 (292)
T PRK07530        153 -ELI-----RGIATDEATFEAAKEFVTKLGKTITVAE  183 (292)
T ss_pred             -EEe-----CCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence             122     2334556788999999999999888774

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.58  E-value=4.9e-14  Score=132.20  Aligned_cols=154  Identities=14%  Similarity=0.080  Sum_probs=114.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh--------------CCC-------------ceecChhh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ--------------LNA-------------PFFADLND   83 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~--------------~g~-------------~~~~~~~~   83 (335)
                      ..||+|||+|.||..+|..|+.+|++|++||++++..+.+.+              .|.             ...++. +
T Consensus         3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~   81 (291)
T PRK06035          3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E   81 (291)
T ss_pred             CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence            468999999999999999999999999999999876543211              121             133444 3


Q ss_pred             HhhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCC
Q 044593           84 LCELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWEN  161 (335)
Q Consensus        84 ~~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g  161 (335)
                      .+ ++||+||.|+|.+.  ..++++++. +.++++++|+.++|.  .....+.+.+....+|++.||+..+...+    .
T Consensus        82 ~~-~~aDlVieav~e~~~~k~~~~~~l~-~~~~~~~il~S~tsg--~~~~~la~~~~~~~r~ig~hf~~P~~~~~----~  153 (291)
T PRK06035         82 SL-SDADFIVEAVPEKLDLKRKVFAELE-RNVSPETIIASNTSG--IMIAEIATALERKDRFIGMHWFNPAPVMK----L  153 (291)
T ss_pred             Hh-CCCCEEEEcCcCcHHHHHHHHHHHH-hhCCCCeEEEEcCCC--CCHHHHHhhcCCcccEEEEecCCCcccCc----c
Confidence            45 78999999999886  577888885 567888888765443  55677777766556899999988665431    1


Q ss_pred             CcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          162 LPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       162 ~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                      . -++     .++.++.+.++.+.++++.+|..++.+.
T Consensus       154 v-Ev~-----~g~~T~~e~~~~~~~~~~~lgk~~v~v~  185 (291)
T PRK06035        154 I-EVV-----RAALTSEETFNTTVELSKKIGKIPIEVA  185 (291)
T ss_pred             E-EEe-----CCCCCCHHHHHHHHHHHHHcCCeEEEeC
Confidence            1 121     2344567788999999999999999885

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.58  E-value=3.2e-14  Score=135.02  Aligned_cols=161  Identities=22%  Similarity=0.246  Sum_probs=109.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------------CCceecChhhHhhcCCCEEEEec
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------------NAPFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------------g~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      ||||+|||+|.||+.+|..|.++|++|++|+|+++..+...+.              ++....+..+.+ +++|+||+|+
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~~v   79 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEAL-ADADLILVAV   79 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHH-hCCCEEEEeC
Confidence            4799999999999999999999999999999998766544443              233455666666 7899999999


Q ss_pred             CchhHHHHHhhccccccCCccEEEEcC-CCCch----HHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceeccccc
Q 044593           97 SILSTQSVLKSIPFQRLKRSTLFVDVL-SVKEF----PRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRI  171 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l~~~~iVvd~~-SvK~~----~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~  171 (335)
                      |...+.+++.++. +.++++++|++++ ++...    ..+.+.+.++..   ....++.||........+.+..+.   +
T Consensus        80 ~~~~~~~v~~~l~-~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~---~~~~~~~~P~~~~~~~~g~~~~~~---~  152 (325)
T PRK00094         80 PSQALREVLKQLK-PLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDL---APIAVLSGPSFAKEVARGLPTAVV---I  152 (325)
T ss_pred             CHHHHHHHHHHHH-hhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCC---CceEEEECccHHHHHHcCCCcEEE---E
Confidence            9999999999885 5778899999886 33221    234455544421   112344555543222234332221   1


Q ss_pred             CCChhHHHHHHHHHHHHHhcCCEEEEeChH
Q 044593          172 GNDEERIKRVDKFLDVFAKEGCRMVEMSCF  201 (335)
Q Consensus       172 ~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~  201 (335)
                      ++.  +.+.++.+.++|+..|.+++..+.-
T Consensus       153 ~~~--~~~~~~~~~~~l~~~~~~~~~~~d~  180 (325)
T PRK00094        153 AST--DEELAERVQELFHSPYFRVYTNTDV  180 (325)
T ss_pred             EeC--CHHHHHHHHHHhCCCCEEEEecCCc
Confidence            221  3467788999999999887666443

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.57  E-value=1.5e-13  Score=130.10  Aligned_cols=159  Identities=16%  Similarity=0.135  Sum_probs=115.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC-CcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH-
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD-HSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL-  105 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~-~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl-  105 (335)
                      ..+.++|+|||+|.||.++|..|+..|++|++++++. ...+.+.+.|+... +..+++ ++||+|++++|+.....++ 
T Consensus        14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa-~~ADVVvLaVPd~~~~~V~~   91 (330)
T PRK05479         14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAA-KWADVIMILLPDEVQAEVYE   91 (330)
T ss_pred             hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHH-hcCCEEEEcCCHHHHHHHHH
Confidence            3467899999999999999999999999998887764 45566777787654 777777 8999999999999888888 


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccc---cCCCcceecccccCCChhHHHHHH
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSS---WENLPFMYDKVRIGNDEERIKRVD  182 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~---~~g~~~i~~~~~~~~~~~~~~~~~  182 (335)
                      +++. +.++++++|+-+.+..   +.......+.+.+++...|......-...   -.|.|.++.   +..+ .+.+..+
T Consensus        92 ~~I~-~~Lk~g~iL~~a~G~~---i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~a---v~~d-~t~~a~~  163 (330)
T PRK05479         92 EEIE-PNLKEGAALAFAHGFN---IHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIA---VHQD-ASGNAKD  163 (330)
T ss_pred             HHHH-hcCCCCCEEEECCCCC---hhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEE---ecCC-CCHHHHH
Confidence            6774 6789999886665542   24444455667788888887655511011   156666652   1122 2345678


Q ss_pred             HHHHHHHhcCCEEE
Q 044593          183 KFLDVFAKEGCRMV  196 (335)
Q Consensus       183 ~v~~l~~~~G~~v~  196 (335)
                      .+..+++.+|+...
T Consensus       164 ~a~~l~~aiG~~~~  177 (330)
T PRK05479        164 LALAYAKGIGGTRA  177 (330)
T ss_pred             HHHHHHHHcCCCcc
Confidence            88999999998743

>PLN02858 fructose-bisphosphate aldolase

Probab=99.57  E-value=1.5e-13  Score=151.25  Aligned_cols=172  Identities=10%  Similarity=0.028  Sum_probs=130.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCc-hhHHHHHh--
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSI-LSTQSVLK--  106 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~-~~~~~vl~--  106 (335)
                      ..++|||||+|.||..||..|.+.|++|++|||+++..+...+.|.....++.+++ ++||+||+|+|. ..+.+++.  
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~-~~aDvVi~~V~~~~~v~~Vl~g~  401 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVA-KDVDVLVIMVANEVQAENVLFGD  401 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHH-hcCCEEEEecCChHHHHHHHhch
Confidence            45899999999999999999999999999999998877667777877677888887 899999999994 45677763  


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCC---CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHH
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP---QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVD  182 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~---~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~  182 (335)
                       .+. +.+++|++|+|++++.....+.+.+.+.   .+..|+.+ |+.|.....  ..|...++.    +++   ++.++
T Consensus       402 ~g~~-~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDA-PVsGg~~~A--~~G~L~imv----gG~---~~~~~  470 (1378)
T PLN02858        402 LGAV-SALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDA-PVSGGVKRA--AMGTLTIMA----SGT---DEALK  470 (1378)
T ss_pred             hhHH-hcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEc-cCCCChhhh--hcCCceEEE----ECC---HHHHH
Confidence             232 4578999999999987766666655443   46778875 888877542  255544543    444   35788


Q ss_pred             HHHHHHHhcCCEEEE-eChHHHHHHHHHhhhh
Q 044593          183 KFLDVFAKEGCRMVE-MSCFDHDKYAAGSQFV  213 (335)
Q Consensus       183 ~v~~l~~~~G~~v~~-~~~~eHD~~~A~~s~l  213 (335)
                      +++++|+.+|.++++ .++......+.+++++
T Consensus       471 ~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~  502 (1378)
T PLN02858        471 SAGSVLSALSEKLYVIKGGCGAGSGVKMVNQL  502 (1378)
T ss_pred             HHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHH
Confidence            999999999988876 4555556677776544

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.55  E-value=6.6e-13  Score=125.54  Aligned_cols=184  Identities=14%  Similarity=0.052  Sum_probs=132.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCC-CCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHhh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRS-DHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLKS  107 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~-~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~~  107 (335)
                      +.+||+|||+|+||.++|..|.+.|++|+++++. ++..+.+.+.|+... +..+++ +++|+|++|+|+. ....++++
T Consensus         2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~-~~ADiVvLaVpp~~~~~~v~~e   79 (314)
T TIGR00465         2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAI-PQADLIMNLLPDEVQHEVYEAE   79 (314)
T ss_pred             CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHH-hcCCEEEEeCCcHhHHHHHHHH
Confidence            4689999999999999999999999988765544 445555667788654 567776 7999999999999 66666777


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCC-------cccccCCCcceecccccCCChhHHHH
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPES-------AKSSWENLPFMYDKVRIGNDEERIKR  180 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~-------~~~~~~g~~~i~~~~~~~~~~~~~~~  180 (335)
                      +. +.++++.+|.-..++   .+..++..+|.+.+++...|......       +    .|.+.++..   ..+ .+.+.
T Consensus        80 i~-~~l~~g~iVs~aaG~---~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G----~G~~~l~a~---~~~-~~~~~  147 (314)
T TIGR00465        80 IQ-PLLKEGKTLGFSHGF---NIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEG----FGVPTLIAV---EQD-PTGEA  147 (314)
T ss_pred             HH-hhCCCCcEEEEeCCc---cHhhccccCCCCCcEEEECCCCCcHHHHHHhhcC----CCeeEEEEe---cCC-CCHHH
Confidence            74 567778654444444   34666667777778888889876652       3    566655421   122 23456


Q ss_pred             HHHHHHHHHhcCCE-------E--EEeChHHHHHHHHHhhhhHHHHHH---HHHHcCCC
Q 044593          181 VDKFLDVFAKEGCR-------M--VEMSCFDHDKYAAGSQFVTHTMGR---VLERFGVE  227 (335)
Q Consensus       181 ~~~v~~l~~~~G~~-------v--~~~~~~eHD~~~A~~s~lph~la~---aL~~~~~~  227 (335)
                      .+.+..+++.+|..       .  .+++.+.-|..++++...|.++-.   +|++.|.+
T Consensus       148 ~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~  206 (314)
T TIGR00465       148 MAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQ  206 (314)
T ss_pred             HHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCC
Confidence            68889999999975       3  266677888899999889887643   45555654

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.55  E-value=1.3e-13  Score=135.44  Aligned_cols=175  Identities=17%  Similarity=0.129  Sum_probs=116.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-------------------CC-CceecChhhHhhcCCCE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-------------------LN-APFFADLNDLCELHPDV   91 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-------------------~g-~~~~~~~~~~~~~~aDv   91 (335)
                      |||+|||+|.||..+|..|.++||+|++||++++..+...+                   .| +..+++..+++ +++|+
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~-~~adv   79 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAI-RDADV   79 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHH-hhCCE
Confidence            68999999999999999999999999999999876653332                   23 34556667766 78999


Q ss_pred             EEEecCch----------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHH-hhCCC------CC-ceEeccccCCCC
Q 044593           92 VLLSTSIL----------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFL-KYLPQ------DF-DILCTHPMFGPE  153 (335)
Q Consensus        92 VIlavp~~----------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~-~~l~~------~~-~~v~~HPmaG~~  153 (335)
                      ||+|+|..          .+..+++.+. +.++++++|++.+++.....+.+. ..+..      +. ..+..+|.+..+
T Consensus        80 vii~vpt~~~~~~~~d~~~v~~~~~~i~-~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~  158 (411)
T TIGR03026        80 IIICVPTPLKEDGSPDLSYVESAAETIA-KHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLRE  158 (411)
T ss_pred             EEEEeCCCCCCCCCcChHHHHHHHHHHH-HhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCCC
Confidence            99999976          3677777774 568899999998876544433332 22111      12 245667765544


Q ss_pred             Ccc-cccCCCcceecccccCCChhHHHHHHHHHHHHHhcC-CEEEEeChHHHHHHHHHhhhhHH
Q 044593          154 SAK-SSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEG-CRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       154 ~~~-~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G-~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      ... ..+...+.++    ++.   +++..+.++++++.++ ..++.++..+.-.++.++.+.-+
T Consensus       159 G~~~~~~~~~~~iv----~G~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~  215 (411)
T TIGR03026       159 GNAVHDLLNPDRIV----GGE---TEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFR  215 (411)
T ss_pred             CChhhhhcCCCEEE----EeC---CHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHH
Confidence            210 0011111222    243   3467788999999997 45666666666777777765554

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.55  E-value=1.1e-13  Score=129.59  Aligned_cols=209  Identities=19%  Similarity=0.269  Sum_probs=144.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------C------CceecChhhHhhcCCCEEEEec
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------N------APFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------g------~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      ++||+|||.|.+|+++|..|.++||+|.+|.|+++..+...+.        |      +..++|+.+++ +++|+|++++
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~-~~ad~iv~av   79 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEAL-DGADIIVIAV   79 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHH-hcCCEEEEEC
Confidence            4799999999999999999999999999999998766544332        2      23467888887 7899999999


Q ss_pred             CchhHHHHHhhccccccCCccEEEEcC-----CCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceeccccc
Q 044593           97 SILSTQSVLKSIPFQRLKRSTLFVDVL-----SVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRI  171 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l~~~~iVvd~~-----SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~  171 (335)
                      |...+.++++++. +.++++.+++.++     .+...+.+.+++.++...  ++  -+.||..+.+...+.|..++   +
T Consensus        80 Ps~~~r~v~~~l~-~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~--~~--vLSGPs~A~EVa~g~pta~~---v  151 (329)
T COG0240          80 PSQALREVLRQLK-PLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP--IA--VLSGPSFAKEVAQGLPTAVV---V  151 (329)
T ss_pred             ChHHHHHHHHHHh-hhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe--EE--EEECccHHHHHhcCCCcEEE---E
Confidence            9999999999995 7888999998874     223345577777777432  22  25688877777788877654   2


Q ss_pred             CCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHH--H-HcCCCC---CCCCCcchhhHHHHHHH
Q 044593          172 GNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVL--E-RFGVES---SPINTKGYETLLDLVDN  245 (335)
Q Consensus       172 ~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL--~-~~~~~~---~~~~~~gf~~~~rl~~~  245 (335)
                      .+  .+.+..++++++|..--++++..+.-.-   +.+...+--++|.+.  . ..+...   ..+-+.|+..++|+...
T Consensus       152 as--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G---veigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~  226 (329)
T COG0240         152 AS--NDQEAAEKVQALFSSPYFRVYTSTDVIG---VEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVA  226 (329)
T ss_pred             ec--CCHHHHHHHHHHhCCCcEEEEecCchhh---hHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHH
Confidence            32  2356778899999998888887762211   223333434443322  1 111111   13557888999998776


Q ss_pred             hhCCChHhH
Q 044593          246 TKGDSFDLY  254 (335)
Q Consensus       246 ia~~~~~lw  254 (335)
                      + +..|+.+
T Consensus       227 l-G~~~~T~  234 (329)
T COG0240         227 L-GAKPETF  234 (329)
T ss_pred             h-CCCcchh
Confidence            4 4445533

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.54  E-value=1e-12  Score=129.10  Aligned_cols=235  Identities=13%  Similarity=0.046  Sum_probs=141.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce--ecChhhH---------------hhcCCCE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF--FADLNDL---------------CELHPDV   91 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~--~~~~~~~---------------~~~~aDv   91 (335)
                      |.+|||+|||+|.||..+|..|+++|++|++||++++..+.. +.|...  ...++++               . ++||+
T Consensus         1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l-~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~-~~aDv   78 (415)
T PRK11064          1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTI-NRGEIHIVEPDLDMVVKTAVEGGYLRATTTP-EPADA   78 (415)
T ss_pred             CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHH-HCCCCCcCCCCHHHHHHHHhhcCceeeeccc-ccCCE
Confidence            456899999999999999999999999999999999877643 333221  1111211               2 47999


Q ss_pred             EEEecCch----------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC-CC-------------ceEecc
Q 044593           92 VLLSTSIL----------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ-DF-------------DILCTH  147 (335)
Q Consensus        92 VIlavp~~----------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~-~~-------------~~v~~H  147 (335)
                      ||+|+|..          .+..+++.+. +.+++|++|++.+++.....+.+...+.. +.             .++...
T Consensus        79 vii~vptp~~~~~~~dl~~v~~~~~~i~-~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~  157 (415)
T PRK11064         79 FLIAVPTPFKGDHEPDLTYVEAAAKSIA-PVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYC  157 (415)
T ss_pred             EEEEcCCCCCCCCCcChHHHHHHHHHHH-HhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEEC
Confidence            99999984          6777888885 67899999999988876655555432211 00             123333


Q ss_pred             c--cCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHH----
Q 044593          148 P--MFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVL----  221 (335)
Q Consensus       148 P--maG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL----  221 (335)
                      |  +.+.....+  .+.+..+    +++.  +++..+.++++++.++..++.++..+.-+++.++.+.-..+-.++    
T Consensus       158 PE~~~~G~~~~~--~~~~~~v----vgG~--~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~  229 (415)
T PRK11064        158 PERVLPGQVMVE--LIKNDRV----IGGM--TPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANEL  229 (415)
T ss_pred             CCccCCCChhhh--hcCCCEE----EEeC--CHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  111110000  1122222    2331  245678889999999877777777777788888776655432111    


Q ss_pred             ----HHcCCCC---------C-C----CCCcch------hhHHHHHHHhhCCChHhHHHHHhhCHhH-HHHHHHHHHHH
Q 044593          222 ----ERFGVES---------S-P----INTKGY------ETLLDLVDNTKGDSFDLYYGLFMYNKNS-LEQLQRLEMAF  275 (335)
Q Consensus       222 ----~~~~~~~---------~-~----~~~~gf------~~~~rl~~~ia~~~~~lw~~I~~~N~~~-~~~l~~~~~~l  275 (335)
                          .+.++|.         . .    ..++||      +|..-|+.. ++.++.||......|..- ...++.+.+.|
T Consensus       230 ~~lae~~GiD~~~v~~~~~~~~ri~~l~pG~G~GG~ClpkD~~~L~~~-~~~~~~l~~~a~~~N~~~~~~v~~~~~~~l  307 (415)
T PRK11064        230 SLICADQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVAQ-NPQQARLIRTAREVNDGKPHWVIDQVKAAV  307 (415)
T ss_pred             HHHHHHhCCCHHHHHHHhccCCCcccCCCCCCCCCccccccHHHHHHh-cCCccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                2334431         0 1    112322      344444332 555678888877777654 23444444333

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.52  E-value=5.8e-13  Score=124.71  Aligned_cols=154  Identities=14%  Similarity=0.124  Sum_probs=112.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHH-----------HHhCCC-------------ceecChhhHhh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAV-----------RQQLNA-------------PFFADLNDLCE   86 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~-----------a~~~g~-------------~~~~~~~~~~~   86 (335)
                      ..||+|||+|.||..||..+..+|++|++||++++..+.           +.+.|.             ..+++.++ + 
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~-   82 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-F-   82 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-h-
Confidence            458999999999999999999999999999999887554           222332             24566654 4 


Q ss_pred             cCCCEEEEecCchh--HHHHHhhcccccc-CCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593           87 LHPDVVLLSTSILS--TQSVLKSIPFQRL-KRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP  163 (335)
Q Consensus        87 ~~aDvVIlavp~~~--~~~vl~~l~~~~l-~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~  163 (335)
                      ++||+||-|+|.+.  ...++.++. ..+ ++++++++.+|+  .+...+........++++.|+...+...+     ..
T Consensus        83 ~~~d~ViEav~E~~~~K~~l~~~l~-~~~~~~~~il~snTS~--~~~~~la~~~~~~~r~~g~hf~~P~~~~~-----lv  154 (286)
T PRK07819         83 ADRQLVIEAVVEDEAVKTEIFAELD-KVVTDPDAVLASNTSS--IPIMKLAAATKRPGRVLGLHFFNPVPVLP-----LV  154 (286)
T ss_pred             CCCCEEEEecccCHHHHHHHHHHHH-HhhCCCCcEEEECCCC--CCHHHHHhhcCCCccEEEEecCCCcccCc-----eE
Confidence            79999999999885  356667774 455 789999988777  33455555555455799999888655431     11


Q ss_pred             ceecccccCCChhHHHHHHHHHHHHH-hcCCEEEEeC
Q 044593          164 FMYDKVRIGNDEERIKRVDKFLDVFA-KEGCRMVEMS  199 (335)
Q Consensus       164 ~i~~~~~~~~~~~~~~~~~~v~~l~~-~~G~~v~~~~  199 (335)
                      -++     ....++++.++.+..++. .+|..++.+.
T Consensus       155 Elv-----~~~~T~~~~~~~~~~~~~~~lgk~pv~v~  186 (286)
T PRK07819        155 ELV-----PTLVTSEATVARAEEFASDVLGKQVVRAQ  186 (286)
T ss_pred             EEe-----CCCCCCHHHHHHHHHHHHHhCCCCceEec
Confidence            122     234456788999999988 5998888873

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.46  E-value=4.8e-13  Score=126.51  Aligned_cols=145  Identities=22%  Similarity=0.326  Sum_probs=100.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      ..|||+|||+|.||+++|..|.++|++|++|+|++.             .++.+++ +++|+||+|+|...+.++++.+.
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~-~~advvi~~vp~~~~~~v~~~l~   68 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVL-ADADVIVSAVSMKGVRPVAEQVQ   68 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHH-hcCCEEEEECChHHHHHHHHHHH
Confidence            458999999999999999999999999999999864             3456666 78999999999998999998884


Q ss_pred             ccccCCccEEEEcCC-CCc----hHHHHHHhhCCCCCceEecccc---CCCCCcccccCCCcceecccccCCChhHHHHH
Q 044593          110 FQRLKRSTLFVDVLS-VKE----FPRNLFLKYLPQDFDILCTHPM---FGPESAKSSWENLPFMYDKVRIGNDEERIKRV  181 (335)
Q Consensus       110 ~~~l~~~~iVvd~~S-vK~----~~~~~l~~~l~~~~~~v~~HPm---aG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~  181 (335)
                      ...++++++|++++. ...    ...+.+...+       ..+|+   .||..+.+...+.+....  +++.+   .+..
T Consensus        69 ~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~-------~~~~v~~i~gp~~a~ei~~~~~~~~~--~ag~~---~~~~  136 (308)
T PRK14619         69 ALNLPPETIIVTATKGLDPETTRTPSQIWQAAF-------PNHPVVVLSGPNLSKEIQQGLPAATV--VASRD---LAAA  136 (308)
T ss_pred             HhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHc-------CCCceEEEECCCcHHHHhcCCCeEEE--EEeCC---HHHH
Confidence            213678899999753 211    1222233222       23454   455543332334332221  12333   4577


Q ss_pred             HHHHHHHHhcCCEEEEeCh
Q 044593          182 DKFLDVFAKEGCRMVEMSC  200 (335)
Q Consensus       182 ~~v~~l~~~~G~~v~~~~~  200 (335)
                      +.++++|...|.+++..+.
T Consensus       137 ~~v~~ll~~~~~~~~~~~d  155 (308)
T PRK14619        137 ETVQQIFSSERFRVYTNSD  155 (308)
T ss_pred             HHHHHHhCCCcEEEEecCC
Confidence            8899999999998886654

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.46  E-value=5e-14  Score=115.77  Aligned_cols=115  Identities=23%  Similarity=0.276  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEE-cCCCCcHHHHHh-CCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVH-SRSDHSPAVRQQ-LNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~-dr~~~~~~~a~~-~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      ...+||+|||+|++|..++++|.++||.|.++ .|++++.+.+.. .+-....++.+++ .++|++|+|||++.+.++.+
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~-~~aDlv~iavpDdaI~~va~   86 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEIL-RDADLVFIAVPDDAIAEVAE   86 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGG-CC-SEEEE-S-CCHHHHHHH
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccccccccc-ccCCEEEEEechHHHHHHHH
Confidence            45789999999999999999999999998765 788766654544 3434445666777 89999999999999999999


Q ss_pred             hccccc--cCCccEEEEcCCCCc-hHHHHHHhhCCCCCceEeccc
Q 044593          107 SIPFQR--LKRSTLFVDVLSVKE-FPRNLFLKYLPQDFDILCTHP  148 (335)
Q Consensus       107 ~l~~~~--l~~~~iVvd~~SvK~-~~~~~l~~~l~~~~~~v~~HP  148 (335)
                      +|. ..  ++++++|+++++... .+++.+++   .+....+.||
T Consensus        87 ~La-~~~~~~~g~iVvHtSGa~~~~vL~p~~~---~Ga~~~s~HP  127 (127)
T PF10727_consen   87 QLA-QYGAWRPGQIVVHTSGALGSDVLAPARE---RGAIVASLHP  127 (127)
T ss_dssp             HHH-CC--S-TT-EEEES-SS--GGGGHHHHH---TT-EEEEEEE
T ss_pred             HHH-HhccCCCCcEEEECCCCChHHhhhhHHH---CCCeEEEeCc
Confidence            995 34  679999999976543 33444433   4567788888

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.45  E-value=1.7e-12  Score=116.97  Aligned_cols=165  Identities=17%  Similarity=0.201  Sum_probs=113.1

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh--------CCCc---eecChhhHhhcCCCEEEEecCch
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ--------LNAP---FFADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~--------~g~~---~~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      |||+||| +|.||++++..|.++|++|++++|+++..+...+        .|+.   ...+..+.+ .++|+||+|+|..
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~-~~aDvVilavp~~   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAA-KRADVVILAVPWD   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHH-hcCCEEEEECCHH
Confidence            6899997 8999999999999999999999999866533222        1221   123445566 7899999999999


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCCch---------------HHHHHHhhCCCCCceEeccccCCCCCccccc--CCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVKEF---------------PRNLFLKYLPQDFDILCTHPMFGPESAKSSW--ENL  162 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~~---------------~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~--~g~  162 (335)
                      .+.++++++. +.++ +++|+|++..-..               ..+.+++.+|.+.++|.+.|..+.+......  .+.
T Consensus        80 ~~~~~l~~l~-~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~~~~  157 (219)
T TIGR01915        80 HVLKTLESLR-DELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDEVDC  157 (219)
T ss_pred             HHHHHHHHHH-Hhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCCCCC
Confidence            9999998884 4454 4889998532211               1255777777546788887765544321100  122


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhc-CCEEEEeChHHHHHH
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKE-GCRMVEMSCFDHDKY  206 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~-G~~v~~~~~~eHD~~  206 (335)
                      ..++    ++.+   +++.+.+.+|.+.+ |++++.+.+-.+.+.
T Consensus       158 ~~~v----~Gdd---~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~  195 (219)
T TIGR01915       158 DVLV----CGDD---EEAKEVVAELAGRIDGLRALDAGPLENAAI  195 (219)
T ss_pred             CEEE----ECCC---HHHHHHHHHHHHhcCCCCcccCCchhhHHH
Confidence            2222    3444   33567788999999 999999887666543

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.43  E-value=2.6e-12  Score=128.89  Aligned_cols=155  Identities=14%  Similarity=0.088  Sum_probs=112.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-----------HhCC-------------CceecChhhHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-----------QQLN-------------APFFADLNDLC   85 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-----------~~~g-------------~~~~~~~~~~~   85 (335)
                      ..+||+|||+|.||..||..+..+|++|++||++++..+.+           .+.|             +..++++.++ 
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l-   82 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL-   82 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh-
Confidence            45689999999999999999999999999999998766432           2234             2346677654 


Q ss_pred             hcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593           86 ELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP  163 (335)
Q Consensus        86 ~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~  163 (335)
                       .+||+||.|+|.+.  ...++.++. ..++++++|...+|+-  ....+.+.+....++++.|.+..+...     ...
T Consensus        83 -~~aDlVIEav~E~~~vK~~vf~~l~-~~~~~~~IlasnTStl--~i~~iA~~~~~p~r~~G~HFf~Papv~-----~Lv  153 (503)
T TIGR02279        83 -ADAGLVIEAIVENLEVKKALFAQLE-ELCPADTIIASNTSSL--SITAIAAGLARPERVAGLHFFNPAPVM-----ALV  153 (503)
T ss_pred             -CCCCEEEEcCcCcHHHHHHHHHHHH-hhCCCCeEEEECCCCC--CHHHHHHhcCcccceEEEeccCccccC-----ceE
Confidence             68999999999864  456677774 5677888877544442  224555556555579999977744432     111


Q ss_pred             ceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                       .    +++++.++++.++.+.++++.+|..++++.
T Consensus       154 -E----vv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~  184 (503)
T TIGR02279       154 -E----VVSGLATAAEVAEQLYETALAWGKQPVHCH  184 (503)
T ss_pred             -E----EeCCCCCCHHHHHHHHHHHHHcCCeeeEeC
Confidence             1    135556677889999999999999998885

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.43  E-value=1.1e-12  Score=125.21  Aligned_cols=155  Identities=15%  Similarity=0.135  Sum_probs=100.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------C------CceecChhhHhhcCCCEEEEec
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------N------APFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------g------~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      +|||+|||+|.||+.+|..|.++|++|++|+|+++..+.....        |      +..++++.+.+ +++|+||+|+
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~-~~aD~Vi~~v   82 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL-AGADFAVVAV   82 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH-cCCCEEEEEC
Confidence            5799999999999999999999999999999987665444332        3      23455677766 7899999999


Q ss_pred             CchhHHHHHhhccccccCCccEEEEcCC-CCch--HHHHHHhhCC----CCCceEeccccCCCCCcccccCCCcceeccc
Q 044593           97 SILSTQSVLKSIPFQRLKRSTLFVDVLS-VKEF--PRNLFLKYLP----QDFDILCTHPMFGPESAKSSWENLPFMYDKV  169 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l~~~~iVvd~~S-vK~~--~~~~l~~~l~----~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~  169 (335)
                      |...+.++++.+     +++.+++++++ ....  ....+.+.++    .+..+     +.||....+...+.+.+..  
T Consensus        83 ~~~~~~~v~~~l-----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~-----~~gP~~a~~~~~~~~~~~~--  150 (328)
T PRK14618         83 PSKALRETLAGL-----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAV-----LSGPNHAEEIARFLPAATV--  150 (328)
T ss_pred             chHHHHHHHHhc-----CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEE-----EECccHHHHHHcCCCeEEE--
Confidence            999988888655     35678888755 2211  0223333322    12222     3344443222233332221  


Q ss_pred             ccCCChhHHHHHHHHHHHHHhcCCEEEEeChH
Q 044593          170 RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCF  201 (335)
Q Consensus       170 ~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~  201 (335)
                      ..+.   +.+.+++++++|+..|.+++..+.-
T Consensus       151 ~~~~---~~~~~~~v~~ll~~~~~~v~~~~di  179 (328)
T PRK14618        151 VASP---EPGLARRVQAAFSGPSFRVYTSRDR  179 (328)
T ss_pred             EEeC---CHHHHHHHHHHhCCCcEEEEecCCc
Confidence            1122   2456788999999999888765433

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.43  E-value=2.3e-11  Score=116.41  Aligned_cols=168  Identities=15%  Similarity=0.181  Sum_probs=113.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-----------------ecChhhHhhcCCCEEE
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-----------------FADLNDLCELHPDVVL   93 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-----------------~~~~~~~~~~~aDvVI   93 (335)
                      +|||+|||+|.||+.+|..|.++|++|++|||++. .+...+.|+..                 .++. +.. .++|+||
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~D~vi   78 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AAL-ATADLVL   78 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhc-cCCCEEE
Confidence            57999999999999999999999999999999753 23344444321                 2333 344 6899999


Q ss_pred             EecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccC----CCCCcccccCCCcceeccc
Q 044593           94 LSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMF----GPESAKSSWENLPFMYDKV  169 (335)
Q Consensus        94 lavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPma----G~~~~~~~~~g~~~i~~~~  169 (335)
                      +|||.....++++.+. +.++++++|+++.+.-. ..+.+++.++....+.+.+|..    ||........|. ..+   
T Consensus        79 l~vk~~~~~~~~~~l~-~~~~~~~iii~~~nG~~-~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~-l~~---  152 (341)
T PRK08229         79 VTVKSAATADAAAALA-GHARPGAVVVSFQNGVR-NADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGA-LAI---  152 (341)
T ss_pred             EEecCcchHHHHHHHH-hhCCCCCEEEEeCCCCC-cHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCc-eEe---
Confidence            9999999999999885 67888899988754322 2356777776432233334422    222111111222 122   


Q ss_pred             ccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhh
Q 044593          170 RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       170 ~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~l  213 (335)
                        +..    +.++.+.++|+..|.++.+.+.-.+..+..++.++
T Consensus       153 --~~~----~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~  190 (341)
T PRK08229        153 --EAS----PALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNL  190 (341)
T ss_pred             --cCC----chHHHHHHHHHhcCCCceecchhHHHHHHHHHHHh
Confidence              222    23578889999999999998887888877776553

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.42  E-value=3.2e-12  Score=128.53  Aligned_cols=154  Identities=16%  Similarity=0.113  Sum_probs=113.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-----------HhCC-------------CceecChhhHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-----------QQLN-------------APFFADLNDLC   85 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-----------~~~g-------------~~~~~~~~~~~   85 (335)
                      ...||+|||+|.||..||..+..+|++|++||++++..+.+           .+.|             +..+++.+++ 
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~-   84 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL-   84 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence            35789999999999999999999999999999999876542           3345             3456677664 


Q ss_pred             hcCCCEEEEecCchh--HHHHHhhccccccCCccEEE-EcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           86 ELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFV-DVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        86 ~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVv-d~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                       .+||+||.|+|.+.  -..++.++. ..+++++++. |++|...   ..+.+.+...-+|++.|.+..+...     ..
T Consensus        85 -~~aDlViEav~E~~~vK~~vf~~l~-~~~~~~ailasntStl~i---~~la~~~~~p~r~~G~hff~Pa~v~-----~L  154 (507)
T PRK08268         85 -ADCDLVVEAIVERLDVKQALFAQLE-AIVSPDCILATNTSSLSI---TAIAAALKHPERVAGLHFFNPVPLM-----KL  154 (507)
T ss_pred             -CCCCEEEEcCcccHHHHHHHHHHHH-hhCCCCcEEEECCCCCCH---HHHHhhcCCcccEEEEeecCCcccC-----ee
Confidence             68999999999885  345666674 4567888885 6666532   3565555544579999977744432     11


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                      . .+    ++++.++.+.++.+.++++.+|..++++.
T Consensus       155 v-Ev----v~g~~Ts~~~~~~~~~l~~~lgk~pv~v~  186 (507)
T PRK08268        155 V-EV----VSGLATDPAVADALYALARAWGKTPVRAK  186 (507)
T ss_pred             E-EE----eCCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence            1 11    34455667889999999999999998885

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.41  E-value=4.6e-13  Score=104.52  Aligned_cols=89  Identities=27%  Similarity=0.431  Sum_probs=73.9

Q ss_pred             eEEEEcccHHHHHHHHHHHHcC---CeEEE-EcCCCCcH-HHHHhCCCceec-ChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           33 KIAVIGFGNFGQFLAKAFARHH---HTLLV-HSRSDHSP-AVRQQLNAPFFA-DLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G---~~V~~-~dr~~~~~-~~a~~~g~~~~~-~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      ||+|||+|+||.+++..|.+.|   ++|++ ++|+++.. +.+.+.++.... +..+++ +++|+||+|+|+..+.+++.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~advvilav~p~~~~~v~~   79 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAA-QEADVVILAVKPQQLPEVLS   79 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHH-HHTSEEEE-S-GGGHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhh-ccCCEEEEEECHHHHHHHHH
Confidence            7999999999999999999999   89984 49999765 455677776555 677877 78999999999999999999


Q ss_pred             hccccccCCccEEEEcCC
Q 044593          107 SIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~S  124 (335)
                      ++  ....++++|+|+..
T Consensus        80 ~i--~~~~~~~~vis~~a   95 (96)
T PF03807_consen   80 EI--PHLLKGKLVISIAA   95 (96)
T ss_dssp             HH--HHHHTTSEEEEEST
T ss_pred             HH--hhccCCCEEEEeCC
Confidence            98  35778899999863

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.40  E-value=9.2e-12  Score=119.92  Aligned_cols=210  Identities=14%  Similarity=0.131  Sum_probs=135.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcC-------CeEEEEcCCCCc-----HHHHHhC--------------CCceecChhh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHH-------HTLLVHSRSDHS-----PAVRQQL--------------NAPFFADLND   83 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G-------~~V~~~dr~~~~-----~~~a~~~--------------g~~~~~~~~~   83 (335)
                      ..+||+|||.|.+|+++|..|.++|       ++|.+|.|+++.     .+...+.              ++..++|+.+
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e   89 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE   89 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence            4589999999999999999999987       799999999852     3323221              2234667777


Q ss_pred             HhhcCCCEEEEecCchhHHHHHhhcccc--ccCCccEEEEcC-CC----C--chHHHHHHhhCCCCCceEeccccCCCCC
Q 044593           84 LCELHPDVVLLSTSILSTQSVLKSIPFQ--RLKRSTLFVDVL-SV----K--EFPRNLFLKYLPQDFDILCTHPMFGPES  154 (335)
Q Consensus        84 ~~~~~aDvVIlavp~~~~~~vl~~l~~~--~l~~~~iVvd~~-Sv----K--~~~~~~l~~~l~~~~~~v~~HPmaG~~~  154 (335)
                      ++ +++|+||++||+..+.++++++. +  .++++.+|+.++ ++    .  ..+.+.+++.++.  .+.   -+.||..
T Consensus        90 av-~~aDiIvlAVPsq~l~~vl~~l~-~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~---~LsGPs~  162 (365)
T PTZ00345         90 AV-EDADLLIFVIPHQFLESVLSQIK-ENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCC---ALSGANV  162 (365)
T ss_pred             HH-hcCCEEEEEcChHHHHHHHHHhc-cccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeE---EEECCCH
Confidence            77 89999999999999999999995 5  677777777653 11    1  2345666666642  221   2567877


Q ss_pred             cccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHH--H-HcCCCC---
Q 044593          155 AKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVL--E-RFGVES---  228 (335)
Q Consensus       155 ~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL--~-~~~~~~---  228 (335)
                      +.+...+.|...+   +.+.  +.+..+.++++|..-.++++..+...-=++.   ..+-.++|.+.  . .++...   
T Consensus       163 A~Eva~~~pt~~v---ias~--~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~---galKNviAIa~Gi~dGl~~G~N~k  234 (365)
T PTZ00345        163 ANDVAREEFSEAT---IGCE--DKDDALIWQRLFDRPYFKINCVPDVIGVEVC---GALKNIIALAAGFCDGLGLGTNTK  234 (365)
T ss_pred             HHHHHcCCCcEEE---EEeC--CHHHHHHHHHHhCCCcEEEEEcCCcccchhh---HHHHHHHHHHHHHHHhcCCChhHH
Confidence            7666678776553   2332  3567788999999888888876632222222   22333333221  1 112211   


Q ss_pred             CCCCCcchhhHHHHHHHhhC-CChHhH
Q 044593          229 SPINTKGYETLLDLVDNTKG-DSFDLY  254 (335)
Q Consensus       229 ~~~~~~gf~~~~rl~~~ia~-~~~~lw  254 (335)
                      ..+-+.|+..+.|+...+.+ .+++.+
T Consensus       235 aalitrgl~Em~~l~~a~g~~~~~~T~  261 (365)
T PTZ00345        235 SAIIRIGLEEMKLFGKIFFPNVMDETF  261 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCccch
Confidence            12446778888887776542 355433

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.39  E-value=6.9e-12  Score=117.37  Aligned_cols=152  Identities=18%  Similarity=0.160  Sum_probs=111.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-----------hCC-------------CceecChhhHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-----------QLN-------------APFFADLNDLC   85 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-----------~~g-------------~~~~~~~~~~~   85 (335)
                      ..+||+|||+|.||+.||..++..|++|+++|++++..+.+.           +.|             +..++++.++ 
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l-   80 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAAL-   80 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHh-
Confidence            468999999999999999999998899999999976543222           112             1223444444 


Q ss_pred             hcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593           86 ELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP  163 (335)
Q Consensus        86 ~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~  163 (335)
                       ++||+||-+++.+.  -.+++.++. ...++++++...+|+  ..+..+.+.+...-+|++.|++..+..-       +
T Consensus        81 -~~~DlVIEAv~E~levK~~vf~~l~-~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m-------~  149 (307)
T COG1250          81 -KDADLVIEAVVEDLELKKQVFAELE-ALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLM-------P  149 (307)
T ss_pred             -ccCCEEEEeccccHHHHHHHHHHHH-hhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcc-------e
Confidence             79999999999885  467888885 678899999887665  4445666666555579999987766532       1


Q ss_pred             ceecccccCCChhHHHHHHHHHHHHHhcCCEEE
Q 044593          164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMV  196 (335)
Q Consensus       164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~  196 (335)
                       +++  ++.+..++++.++.+.++.+.+|..++
T Consensus       150 -LVE--vI~g~~T~~e~~~~~~~~~~~igK~~v  179 (307)
T COG1250         150 -LVE--VIRGEKTSDETVERVVEFAKKIGKTPV  179 (307)
T ss_pred             -eEE--EecCCCCCHHHHHHHHHHHHHcCCCCE
Confidence             221  234555667889999999999995553

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.39  E-value=8e-12  Score=109.94  Aligned_cols=163  Identities=19%  Similarity=0.248  Sum_probs=107.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC-CcHH-HHHhCCCce-ecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD-HSPA-VRQQLNAPF-FADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~-~~~~-~a~~~g~~~-~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      +|+|+|+|.|+||+.+|+.|.+.||+|++-.++. +..+ .+..++... ..++.+++ +.+|+||+++|...+..++.+
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~-~~aDVVvLAVP~~a~~~v~~~   79 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAA-ALADVVVLAVPFEAIPDVLAE   79 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHH-hcCCEEEEeccHHHHHhHHHH
Confidence            5899999999999999999999999998886554 4433 333444432 23455666 789999999999999999999


Q ss_pred             ccccccCCccEEEEcCCC---------------CchHHHHHHhhCCCCCceE-eccccCCCCCcccccC-CCcceecccc
Q 044593          108 IPFQRLKRSTLFVDVLSV---------------KEFPRNLFLKYLPQDFDIL-CTHPMFGPESAKSSWE-NLPFMYDKVR  170 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv---------------K~~~~~~l~~~l~~~~~~v-~~HPmaG~~~~~~~~~-g~~~i~~~~~  170 (335)
                      +. ..+. |++|+|++.-               .....+.+++.+|.. ++| .+|-++-.......-. +...++.   
T Consensus        80 l~-~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~a~~l~~~~~~~~~~~v~v---  153 (211)
T COG2085          80 LR-DALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIPAAVLADLAKPGGRRDVLV---  153 (211)
T ss_pred             HH-HHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccCHHHhccCCCcCCceeEEE---
Confidence            95 4454 8999998653               223446666777653 332 2332222211110001 2222321   


Q ss_pred             cCCChhHHHHHHHHHHHHHhcCCEEEEeChHHH
Q 044593          171 IGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDH  203 (335)
Q Consensus       171 ~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eH  203 (335)
                      +++|   .++.+.+.+|.+.+|++++-..+-+.
T Consensus       154 agDD---~~Ak~~v~~L~~~iG~~~ld~G~L~~  183 (211)
T COG2085         154 AGDD---AEAKAVVAELAEDIGFRPLDAGPLEN  183 (211)
T ss_pred             ecCc---HHHHHHHHHHHHhcCcceeecccccc
Confidence            3443   45677888999999999988876443

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.37  E-value=1.5e-11  Score=121.73  Aligned_cols=160  Identities=14%  Similarity=0.091  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-----CCceecChhhHhhc---CCCEEEEecCchh-HHHHHhhccccc
Q 044593           42 FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-----NAPFFADLNDLCEL---HPDVVLLSTSILS-TQSVLKSIPFQR  112 (335)
Q Consensus        42 mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-----g~~~~~~~~~~~~~---~aDvVIlavp~~~-~~~vl~~l~~~~  112 (335)
                      ||..||+.|.++|++|++|||+++..+...+.     |+....++.+++ +   .+|+||+|+|... +.+++..+. +.
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v-~~l~~~~~Ii~mv~~g~~v~~Vi~~l~-~~   78 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFV-ASLEKPRKILLMVKAGAPVDAVIEQLL-PL   78 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHH-hhCCCCCEEEEECCCchHHHHHHHHHH-hc
Confidence            89999999999999999999999876555542     477778888887 4   4899999999885 688888884 67


Q ss_pred             cCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhc
Q 044593          113 LKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKE  191 (335)
Q Consensus       113 l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~  191 (335)
                      +.+|.+|+|++++.........+.+ ..+++|+.+ |+.|.+.+..  .|. .++    ++++   ++.++.++++|+.+
T Consensus        79 l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvda-pVSGG~~gA~--~G~-siM----~GG~---~~a~~~~~piL~~i  147 (459)
T PRK09287         79 LEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGM-GVSGGEEGAL--HGP-SIM----PGGQ---KEAYELVAPILEKI  147 (459)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEec-CCCCCHHHHh--cCC-EEE----EeCC---HHHHHHHHHHHHHH
Confidence            8999999999876544333333333 457789985 9999876532  564 444    2444   46789999999999


Q ss_pred             CCEE-------EEeChHHHHHHHHHhhhhH
Q 044593          192 GCRM-------VEMSCFDHDKYAAGSQFVT  214 (335)
Q Consensus       192 G~~v-------~~~~~~eHD~~~A~~s~lp  214 (335)
                      +.++       .++.+.--...+.++++..
T Consensus       148 a~~~~~g~~c~~~vG~~GaGh~vKmvhN~i  177 (459)
T PRK09287        148 AAKVEDGEPCVTYIGPDGAGHYVKMVHNGI  177 (459)
T ss_pred             hhhhcCCCCceeeeCCCCHHHHHHHHHHHH
Confidence            9887       8888877777888776543

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.37  E-value=1.3e-11  Score=118.52  Aligned_cols=165  Identities=16%  Similarity=0.171  Sum_probs=112.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCC---------C------ceecChhhHhhcCCCEEEE
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN---------A------PFFADLNDLCELHPDVVLL   94 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g---------~------~~~~~~~~~~~~~aDvVIl   94 (335)
                      .+|||+|||+|.||+++|..|.++| +|++|.++++..+...+.+         .      ..+++..+.+ .++|+||+
T Consensus         6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~-~~aDlVil   83 (341)
T PRK12439          6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAA-NCADVVVM   83 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHH-hcCCEEEE
Confidence            4689999999999999999999999 6888888876655444321         1      2345666666 78999999


Q ss_pred             ecCchhHHHHHhhccccccCCccEEEEcCC-CC----chHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceeccc
Q 044593           95 STSILSTQSVLKSIPFQRLKRSTLFVDVLS-VK----EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKV  169 (335)
Q Consensus        95 avp~~~~~~vl~~l~~~~l~~~~iVvd~~S-vK----~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~  169 (335)
                      |||...+.++++++. +.++++++|+.+.. +.    ....+.+++.++.. ++.   -+.||....+...|.+....  
T Consensus        84 avps~~~~~vl~~i~-~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~-~~~---~l~GP~~a~ev~~g~~t~~v--  156 (341)
T PRK12439         84 GVPSHGFRGVLTELA-KELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGH-PAG---ILAGPNIAREVAEGYAAAAV--  156 (341)
T ss_pred             EeCHHHHHHHHHHHH-hhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCC-CeE---EEECCCHHHHHHcCCCeEEE--
Confidence            999999999999995 67888877776632 21    11235666666532 211   14566654444456654332  


Q ss_pred             ccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHH
Q 044593          170 RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKY  206 (335)
Q Consensus       170 ~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~  206 (335)
                       ++..  +.+..+.++++|+.-+++++..+.-.--.+
T Consensus       157 -ia~~--~~~~~~~v~~lf~~~~~~v~~s~Di~gve~  190 (341)
T PRK12439        157 -LAMP--DQHLATRLSPLFRTRRFRVYTTDDVVGVEM  190 (341)
T ss_pred             -EEeC--CHHHHHHHHHHhCCCCEEEEEcCchHHHHH
Confidence             2222  245678899999999998887764433333

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.36  E-value=1.7e-12  Score=110.98  Aligned_cols=129  Identities=22%  Similarity=0.312  Sum_probs=91.4

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCC--------------CceecChhhHhhcCCCEEEEecCc
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN--------------APFFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g--------------~~~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      ||+|||.|++|.++|..|..+|++|++|.|+++..+...+.+              +..++|+++++ +++|+||+++|.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-~~ad~IiiavPs   79 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-EDADIIIIAVPS   79 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-TT-SEEEE-S-G
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-CcccEEEecccH
Confidence            799999999999999999999999999999986654443321              22467888887 899999999999


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCC-----CCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceec
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLS-----VKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYD  167 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~S-----vK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~  167 (335)
                      ....++++++. ++++++++|+.++-     +...+.+.+++.++... +.   -+.||..+.+...+.|..++
T Consensus        80 ~~~~~~~~~l~-~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~-~~---~lsGP~~A~Ei~~~~pt~~~  148 (157)
T PF01210_consen   80 QAHREVLEQLA-PYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPR-IA---VLSGPSFAEEIAEGKPTAVV  148 (157)
T ss_dssp             GGHHHHHHHHT-TTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCG-EE---EEESS--HHHHHTT--EEEE
T ss_pred             HHHHHHHHHHh-hccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcc-eE---EeeCccHHHHHHcCCCeEEE
Confidence            99999999996 78899999887741     12235577777776542 22   25677776666677666553

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.36  E-value=1.6e-11  Score=128.18  Aligned_cols=164  Identities=15%  Similarity=0.134  Sum_probs=120.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-----------hCC-------------CceecChhhHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-----------QLN-------------APFFADLNDLC   85 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-----------~~g-------------~~~~~~~~~~~   85 (335)
                      ...||+|||+|.||..||..++.+|++|+++|++++..+.+.           +.|             +..+++.+++ 
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  390 (715)
T PRK11730        312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-  390 (715)
T ss_pred             ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-
Confidence            457899999999999999999999999999999987654321           112             2345566554 


Q ss_pred             hcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593           86 ELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP  163 (335)
Q Consensus        86 ~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~  163 (335)
                       ++||+||-|+|.+.  ..+++.++. ..+++++++...+|+  ..+..+.+.+...-+|++.|+...+..-       +
T Consensus       391 -~~aDlViEav~E~l~~K~~vf~~l~-~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~-------~  459 (715)
T PRK11730        391 -ERVDVVVEAVVENPKVKAAVLAEVE-QKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRM-------P  459 (715)
T ss_pred             -cCCCEEEecccCcHHHHHHHHHHHH-hhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCccccc-------c
Confidence             79999999999875  468999995 678999999887766  4456666666655689999987665532       1


Q ss_pred             ceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593          164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG  209 (335)
Q Consensus       164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~  209 (335)
                       +++  ++.++.++++.++.+.++++.+|..++.+. +....++.-
T Consensus       460 -lVE--vv~g~~T~~~~~~~~~~~~~~lgk~pv~v~-d~pGfv~nR  501 (715)
T PRK11730        460 -LVE--VIRGEKTSDETIATVVAYASKMGKTPIVVN-DCPGFFVNR  501 (715)
T ss_pred             -eEE--eeCCCCCCHHHHHHHHHHHHHhCCceEEec-CcCchhHHH
Confidence             221  134555667888999999999999988883 444444433

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.35  E-value=2.3e-11  Score=126.79  Aligned_cols=162  Identities=14%  Similarity=0.119  Sum_probs=119.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHH-HcCCeEEEEcCCCCcHHHHH-----------hC-------------CCceecChhhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFA-RHHHTLLVHSRSDHSPAVRQ-----------QL-------------NAPFFADLNDL   84 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~-~~G~~V~~~dr~~~~~~~a~-----------~~-------------g~~~~~~~~~~   84 (335)
                      ..+||+|||+|.||..||..++ .+|++|+++|++++..+.+.           +.             .+..+++.++ 
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  381 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG-  381 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-
Confidence            4578999999999999999998 58999999999986543221           11             1234556654 


Q ss_pred             hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                      + ++||+||-|+|.+.  ..+++.++. ..+++++++...+|+  ..+..+.+.+....+|++.|+...+...       
T Consensus       382 ~-~~adlViEav~E~l~~K~~v~~~l~-~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~-------  450 (699)
T TIGR02440       382 F-KDVDIVIEAVFEDLALKHQMVKDIE-QECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKM-------  450 (699)
T ss_pred             h-ccCCEEEEeccccHHHHHHHHHHHH-hhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccC-------
Confidence            4 79999999999885  468889985 678899999887666  4456666666555689999998766532       


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHH
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYA  207 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~  207 (335)
                      + +++  ++.++.++++.++.+.++++.+|..++.+. +....+.
T Consensus       451 ~-lVE--vv~g~~T~~~~~~~~~~~~~~~gk~pv~v~-d~pGfi~  491 (699)
T TIGR02440       451 P-LVE--VIPHAGTSEQTIATTVALAKKQGKTPIVVA-DKAGFYV  491 (699)
T ss_pred             c-eEE--EeCCCCCCHHHHHHHHHHHHHcCCeEEEEc-cccchHH
Confidence            1 221  234556677889999999999999999884 4444333

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.35  E-value=2.4e-11  Score=126.79  Aligned_cols=165  Identities=14%  Similarity=0.129  Sum_probs=121.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC-------------CceecChhhH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN-------------APFFADLNDL   84 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g-------------~~~~~~~~~~   84 (335)
                      ...+||+|||+|.||..||..++.+|++|+++|++++..+.+.+           .|             +..+++.+++
T Consensus       311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  390 (714)
T TIGR02437       311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF  390 (714)
T ss_pred             cccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh
Confidence            45679999999999999999999999999999999876543221           11             2234555444


Q ss_pred             hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                        ++||+||-|+|.+.  ..+++.++. ..+++++++...+|+  ..+..+.+.++..-+|++.|+...+..-       
T Consensus       391 --~~aDlViEav~E~l~~K~~vf~~l~-~~~~~~~ilasnTS~--l~i~~ia~~~~~p~r~ig~Hff~P~~~~-------  458 (714)
T TIGR02437       391 --DNVDIVVEAVVENPKVKAAVLAEVE-QHVREDAILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRM-------  458 (714)
T ss_pred             --cCCCEEEEcCcccHHHHHHHHHHHH-hhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEEecCCCcccC-------
Confidence              79999999999885  468999995 678999999887766  4456666666655689999987665532       


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG  209 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~  209 (335)
                      + +++  ++.++.++++.++.+.++++.+|..++.+. +....+..-
T Consensus       459 ~-lvE--vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~-d~pGfi~NR  501 (714)
T TIGR02437       459 P-LVE--VIRGEKSSDETIATVVAYASKMGKTPIVVN-DCPGFFVNR  501 (714)
T ss_pred             c-eEe--ecCCCCCCHHHHHHHHHHHHHcCCEEEEeC-CcccchHHH
Confidence            2 221  234556677889999999999999988884 333334333

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.34  E-value=1.9e-11  Score=116.84  Aligned_cols=206  Identities=12%  Similarity=0.126  Sum_probs=133.0

Q ss_pred             eEEEEcccHHHHHHHHHHHHcC--------CeEEEEcCCC-----CcHHHHHhC--------CC------ceecChhhHh
Q 044593           33 KIAVIGFGNFGQFLAKAFARHH--------HTLLVHSRSD-----HSPAVRQQL--------NA------PFFADLNDLC   85 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G--------~~V~~~dr~~-----~~~~~a~~~--------g~------~~~~~~~~~~   85 (335)
                      ||+|||.|.+|+++|..|..+|        ++|.+|.|++     +..+...+.        |+      ..++|+.+++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            6999999999999999999999        9999999843     222222111        22      2456778877


Q ss_pred             hcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcC-----C--CCchHHHHHHhhCCCCCceEeccccCCCCCcccc
Q 044593           86 ELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVL-----S--VKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSS  158 (335)
Q Consensus        86 ~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~-----S--vK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~  158 (335)
                       +++|+||+|||...+.++++++. +.++++++++.++     .  +...+.+.+++.++.  .+   --+.||..+.+.
T Consensus        81 -~~ADiIIlAVPs~~i~~vl~~l~-~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~---~~lsGP~~A~Ev  153 (342)
T TIGR03376        81 -KGADILVFVIPHQFLEGICKQLK-GHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PC---GVLSGANLANEV  153 (342)
T ss_pred             -hcCCEEEEECChHHHHHHHHHHH-hhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--Ce---EEeeCcchHHHH
Confidence             89999999999999999999995 6788888888763     1  112344566666632  22   226688887677


Q ss_pred             cCCCcceecccccCCChhH--HHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHH--HH-HcCCCC---CC
Q 044593          159 WENLPFMYDKVRIGNDEER--IKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRV--LE-RFGVES---SP  230 (335)
Q Consensus       159 ~~g~~~i~~~~~~~~~~~~--~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~a--L~-~~~~~~---~~  230 (335)
                      ..+.|...+   +.+...+  .+..+.++++|..--++++..+...-=++.+   .+--++|.+  +. .++...   ..
T Consensus       154 a~~~pt~~~---ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~g---alKNv~AIa~Gi~~Gl~~g~N~~aa  227 (342)
T TIGR03376       154 AKEKFSETT---VGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAG---ALKNVVAIAAGFVDGLGWGDNAKAA  227 (342)
T ss_pred             HcCCCceEE---EEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhH---HHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            778776553   2222111  4667889999998888888776332222222   233333322  11 112211   12


Q ss_pred             CCCcchhhHHHHHHHhhCCChH
Q 044593          231 INTKGYETLLDLVDNTKGDSFD  252 (335)
Q Consensus       231 ~~~~gf~~~~rl~~~ia~~~~~  252 (335)
                      +-+.|++.+.|+...+ +.+|+
T Consensus       228 litrgl~Em~~l~~~~-g~~~~  248 (342)
T TIGR03376       228 VMRRGLLEMIKFARMF-FPTGE  248 (342)
T ss_pred             HHHHHHHHHHHHHHHh-CCCCC
Confidence            4567888888888774 44443

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.33  E-value=2.2e-11  Score=127.42  Aligned_cols=156  Identities=13%  Similarity=0.116  Sum_probs=117.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC-------------CceecChhhH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN-------------APFFADLNDL   84 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g-------------~~~~~~~~~~   84 (335)
                      ....+|+|||+|.||+.||..++.+|++|+++|++++..+.+.+           .|             +..+++.+++
T Consensus       333 ~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  412 (737)
T TIGR02441       333 RPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF  412 (737)
T ss_pred             CcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence            45679999999999999999999999999999999876543211           12             2345566554


Q ss_pred             hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                        ++||+||-|+|.+.  ..+++.++. ..+++++++...+|+  ..+..+.+.+...-+|++.|+...+..-       
T Consensus       413 --~~aDlViEAv~E~l~~K~~vf~~l~-~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~ig~Hff~P~~~m-------  480 (737)
T TIGR02441       413 --KNADMVIEAVFEDLSLKHKVIKEVE-AVVPPHCIIASNTSA--LPIKDIAAVSSRPEKVIGMHYFSPVDKM-------  480 (737)
T ss_pred             --ccCCeehhhccccHHHHHHHHHHHH-hhCCCCcEEEEcCCC--CCHHHHHhhcCCccceEEEeccCCcccC-------
Confidence              79999999999885  568999995 678999999877665  4456676666655689999987765532       


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                      + +++  ++.++.++++.++.+..+++.+|..++.+.
T Consensus       481 ~-LvE--vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~  514 (737)
T TIGR02441       481 Q-LLE--IITHDGTSKDTLASAVAVGLKQGKVVIVVK  514 (737)
T ss_pred             c-eEE--EeCCCCCCHHHHHHHHHHHHHCCCeEEEEC
Confidence            1 221  134556677889999999999999988883

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.33  E-value=1.1e-10  Score=109.81  Aligned_cols=169  Identities=13%  Similarity=0.175  Sum_probs=106.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-------------ecChhhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-------------FADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-------------~~~~~~~~~~~aDvVIlavp~   98 (335)
                      |||+|||+|.||+.+|..|.++|++|++++| ++..+...+.|+..             .++..+.. ..+|+||+|+|.
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vilavk~   78 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELT-GPFDLVILAVKA   78 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHcc-CCCCEEEEEecc
Confidence            6899999999999999999999999999999 65555455555421             23344444 689999999999


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCC-Cccccc--CCC-cceecccccCC-
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPE-SAKSSW--ENL-PFMYDKVRIGN-  173 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~-~~~~~~--~g~-~~i~~~~~~~~-  173 (335)
                      ..+.++++++. +.+.++++|+.+...- ...+.+.+.++.. +++++-...+.. .++...  .+. .+.+     +. 
T Consensus        79 ~~~~~~~~~l~-~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~-~v~~g~~~~~~~~~~~g~v~~~~~~~~~i-----G~~  150 (305)
T PRK12921         79 YQLDAAIPDLK-PLVGEDTVIIPLQNGI-GQLEQLEPYFGRE-RVLGGVVFISAQLNGDGVVVQRADHRLTF-----GEI  150 (305)
T ss_pred             cCHHHHHHHHH-hhcCCCCEEEEeeCCC-ChHHHHHHhCCcc-cEEEEEEEEEEEECCCeEEEEcCCCcEEE-----cCC
Confidence            99999999995 5677888777663321 2345666667643 233221111111 111000  111 1122     21 


Q ss_pred             ChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHh
Q 044593          174 DEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGS  210 (335)
Q Consensus       174 ~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~  210 (335)
                      +....+..+.+.++|...|..+...+.-.+..+..++
T Consensus       151 ~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~  187 (305)
T PRK12921        151 PGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLL  187 (305)
T ss_pred             CCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHH
Confidence            1122345667888999999876665555555555543

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=2.9e-11  Score=107.49  Aligned_cols=167  Identities=15%  Similarity=0.158  Sum_probs=123.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhh--cCCCEEEEecCch-hHHHHHhhc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCE--LHPDVVLLSTSIL-STQSVLKSI  108 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~--~~aDvVIlavp~~-~~~~vl~~l  108 (335)
                      |+|+.||+|.||..+++.|.+.||+|++||+|+...+.+...|+...+++++++.  ....+|-+.+|.. .+.++++++
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l   80 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL   80 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence            7899999999999999999999999999999999998888999888888877652  4678999999998 688999999


Q ss_pred             cccccCCccEEEEcCCCCc-hHHHHHHhhCCCCCceEeccccCCCCCccccc-CCCcceecccccCCChhHHHHHHHHHH
Q 044593          109 PFQRLKRSTLFVDVLSVKE-FPRNLFLKYLPQDFDILCTHPMFGPESAKSSW-ENLPFMYDKVRIGNDEERIKRVDKFLD  186 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~SvK~-~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~-~g~~~i~~~~~~~~~~~~~~~~~~v~~  186 (335)
                      + +.+.+|.+|+|-+++.- ...+..++...++++|+-+    |..-+..+. .|..+++     +.+   ++.++.+.+
T Consensus        81 a-~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~----GTSGG~~G~~~G~~lMi-----GG~---~~a~~~~~p  147 (300)
T COG1023          81 A-PLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDV----GTSGGVWGAERGYCLMI-----GGD---EEAVERLEP  147 (300)
T ss_pred             H-hhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEec----cCCCCchhhhcCceEEe-----cCc---HHHHHHHHH
Confidence            6 78999999999876532 2334433444567888865    222221111 3444333     454   468899999


Q ss_pred             HHHhcCC---EEEEeChHHHHHHHHHhh
Q 044593          187 VFAKEGC---RMVEMSCFDHDKYAAGSQ  211 (335)
Q Consensus       187 l~~~~G~---~v~~~~~~eHD~~~A~~s  211 (335)
                      +|+.+-.   -..++.|.--...+.+++
T Consensus       148 if~~lA~ge~Gyl~~Gp~GsGHfvKMVH  175 (300)
T COG1023         148 IFKALAPGEDGYLYCGPSGSGHFVKMVH  175 (300)
T ss_pred             HHHhhCcCcCccccccCCCcchhHHHHh
Confidence            9997754   255666655444566554

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=99.31  E-value=4.6e-11  Score=109.45  Aligned_cols=152  Identities=16%  Similarity=0.129  Sum_probs=114.4

Q ss_pred             CeEEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHH
Q 044593           55 HTLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLF  133 (335)
Q Consensus        55 ~~V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l  133 (335)
                      ++|++++|+++..+ .+.+.|+....++.+++ .++|+||+|||+..+.+++.++. +.+.++++|+++.+.  ..++.+
T Consensus        10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~-~~aDiIiLaVkP~~i~~vl~~l~-~~~~~~~~ivS~~ag--i~~~~l   85 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKELGIVASSDAQEAV-KEADVVFLAVKPQDLEEVLSELK-SEKGKDKLLISIAAG--VTLEKL   85 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHH-hhCCEEEEEeCHHHHHHHHHHHh-hhccCCCEEEEecCC--CCHHHH
Confidence            58999999987654 44566877777777877 78999999999999999999995 456677899988655  455788


Q ss_pred             HhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhh
Q 044593          134 LKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       134 ~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~l  213 (335)
                      ++.++.+..++...|......+    .|...+.     .++..+.+..+.++++|+.+| +++++++++-|.+++++...
T Consensus        86 ~~~~~~~~~ivR~mPn~~~~~~----~g~t~~~-----~~~~~~~~~~~~v~~lf~~~G-~~~~v~E~~~~~~talsgsg  155 (245)
T TIGR00112        86 SQLLGGTRRVVRVMPNTPAKVG----AGVTAIA-----ANANVSEEDRALVLALFKAVG-EVVELPEALMDAVTALSGSG  155 (245)
T ss_pred             HHHcCCCCeEEEECCChHHHHh----CCeEEEe-----cCCCCCHHHHHHHHHHHHhCC-CEEEECHHHcchHHhhccCc
Confidence            8888755578888888765554    3433232     122333456688899999999 57788888999999999888


Q ss_pred             HHHHHHH
Q 044593          214 THTMGRV  220 (335)
Q Consensus       214 ph~la~a  220 (335)
                      |-++...
T Consensus       156 PA~~~~~  162 (245)
T TIGR00112       156 PAYVFLF  162 (245)
T ss_pred             HHHHHHH
Confidence            8866543

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.30  E-value=8e-11  Score=110.57  Aligned_cols=167  Identities=16%  Similarity=0.192  Sum_probs=105.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-----------ecChhhHhhcCCCEEEEecCchh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-----------FADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-----------~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      |||+|||+|.||+.+|..|.+.|++|++++|+++..+...+.|+..           ..+..++  ..+|+||+|||...
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~d~vila~k~~~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL--GPQDLVILAVKAYQ   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc--CCCCEEEEeccccc
Confidence            6899999999999999999999999999999877665555556522           2333333  68999999999999


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccC-----CCCCcccccCCCcceecccccCCCh
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMF-----GPESAKSSWENLPFMYDKVRIGNDE  175 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPma-----G~~~~~~~~~g~~~i~~~~~~~~~~  175 (335)
                      +.++++++. +.+.++++|+.+.... ...+.+.+.++.. .++.+-...     +|..-.....+. ..+     +...
T Consensus        79 ~~~~~~~l~-~~l~~~~~iv~~~nG~-~~~~~l~~~~~~~-~i~~~~~~~~~~~~~p~~v~~~~~g~-~~i-----g~~~  149 (304)
T PRK06522         79 LPAALPSLA-PLLGPDTPVLFLQNGV-GHLEELAAYIGPE-RVLGGVVTHAAELEGPGVVRHTGGGR-LKI-----GEPD  149 (304)
T ss_pred             HHHHHHHHh-hhcCCCCEEEEecCCC-CcHHHHHHhcCcc-cEEEEEEEEeeEecCCCEEEEcCCCC-EEE-----eCCC
Confidence            999999995 6777887777664432 2335566666542 233221111     111100000121 122     2111


Q ss_pred             hHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593          176 ERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG  209 (335)
Q Consensus       176 ~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~  209 (335)
                      ...+..+.+.++|...|..+...+.-++..+..+
T Consensus       150 ~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl  183 (304)
T PRK06522        150 GESAAAEALADLLNAAGLDVEWSPDIRTEIWRKL  183 (304)
T ss_pred             CCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence            1113467788889988887655554455555443

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.30  E-value=5.5e-11  Score=124.19  Aligned_cols=155  Identities=15%  Similarity=0.140  Sum_probs=116.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHH-HcCCeEEEEcCCCCcHHHHH-----------hCC-------------CceecChhhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFA-RHHHTLLVHSRSDHSPAVRQ-----------QLN-------------APFFADLNDL   84 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~-~~G~~V~~~dr~~~~~~~a~-----------~~g-------------~~~~~~~~~~   84 (335)
                      ..+||+|||+|.||..||..++ ..|++|+++|++++..+.+.           +.|             +..+++.++ 
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  386 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG-  386 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-
Confidence            4679999999999999999998 88999999999987544321           111             234456544 


Q ss_pred             hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                      + ++||+||-|+|.+.  ..+++.++. ..+++++++...+|+  ..+..+.+.+....+|++.|+...+..-       
T Consensus       387 ~-~~aDlViEav~E~~~~K~~v~~~le-~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~-------  455 (708)
T PRK11154        387 F-KHADVVIEAVFEDLALKQQMVAEVE-QNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKM-------  455 (708)
T ss_pred             h-ccCCEEeecccccHHHHHHHHHHHH-hhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccC-------
Confidence            4 79999999999875  468899985 678999999987766  4456666666555689999987655532       


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                      + +++  ++.++.++++.++.+.++++.+|..++.+.
T Consensus       456 ~-lVE--vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~  489 (708)
T PRK11154        456 P-LVE--VIPHAKTSAETIATTVALAKKQGKTPIVVR  489 (708)
T ss_pred             c-eEE--EECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence            1 221  234566778889999999999999888874

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.30  E-value=8.9e-11  Score=115.63  Aligned_cols=175  Identities=13%  Similarity=0.061  Sum_probs=108.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc----------------eecChhhHhhcCCCEEE
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP----------------FFADLNDLCELHPDVVL   93 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~----------------~~~~~~~~~~~~aDvVI   93 (335)
                      ..|||+|||+|.||..+|..|++ ||+|++||++++..+... .|..                .+++..+.+ .+||++|
T Consensus         5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~-~~advvi   81 (425)
T PRK15182          5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKI-KECNFYI   81 (425)
T ss_pred             CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHH-cCCCEEE
Confidence            35899999999999999999887 699999999998876554 3432                223333445 7999999


Q ss_pred             EecCch----------hHHHHHhhccccccCCccEEEEcCCCCchHHHHH-HhhCCC--C-----CceEeccccCCCCCc
Q 044593           94 LSTSIL----------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLF-LKYLPQ--D-----FDILCTHPMFGPESA  155 (335)
Q Consensus        94 lavp~~----------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l-~~~l~~--~-----~~~v~~HPmaG~~~~  155 (335)
                      +|+|..          .+....+.+. +.+++|++|++.+++.....+.+ ...+..  +     ..+++..|-+..+..
T Consensus        82 i~Vptp~~~~~~~dl~~v~~a~~~i~-~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~  160 (425)
T PRK15182         82 ITVPTPINTYKQPDLTPLIKASETVG-TVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGD  160 (425)
T ss_pred             EEcCCCCCCCCCcchHHHHHHHHHHH-HhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCc
Confidence            999965          2444455664 57889999999998876554432 222111  1     123444455544321


Q ss_pred             c-cccCCCcceecccccCCChhHHHHHHHHHHHHHhcC-CEEEEeChHHHHHHHHHhhhhHH
Q 044593          156 K-SSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEG-CRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       156 ~-~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G-~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      . ..+...+.++    .+.+   ++..+.+.++++.+. ..++.++.-+-.+++.++.+.-.
T Consensus       161 a~~~~~~~~riv----~G~~---~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~  215 (425)
T PRK15182        161 KKHRLTNIKKIT----SGST---AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQR  215 (425)
T ss_pred             ccccccCCCeEE----ECCC---HHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHH
Confidence            1 0011122222    2333   345567788888764 23455555555667777665544

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.29  E-value=7.2e-11  Score=112.49  Aligned_cols=170  Identities=16%  Similarity=0.280  Sum_probs=107.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------CC------ceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------NA------PFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------g~------~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |||+|||+|.||+.+|..|.++|++|++|+|+++..+...+.        +.      ..+++..+....++|+||+|||
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            689999999999999999999999999999987655433331        11      1234555543147899999999


Q ss_pred             chhHHHHHhhcccc-ccCCccEEEEcC-CCCc----hHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceeccccc
Q 044593           98 ILSTQSVLKSIPFQ-RLKRSTLFVDVL-SVKE----FPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRI  171 (335)
Q Consensus        98 ~~~~~~vl~~l~~~-~l~~~~iVvd~~-SvK~----~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~  171 (335)
                      ...+.++++++. + .+++++.|+.+. +...    .+.+.+.+.++.. .+.   .+.||....+...+.+..+.   +
T Consensus        81 s~~~~~~l~~l~-~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~---~~~Gp~~a~~~~~~~~~~~~---~  152 (326)
T PRK14620         81 TQQLRTICQQLQ-DCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIA---ILSGPSFAKEIAEKLPCSIV---L  152 (326)
T ss_pred             HHHHHHHHHHHH-HhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceE---eecCCcHHHHHHcCCCcEEE---E
Confidence            999999999995 5 677776555442 2211    1234455555432 111   13366543222333333222   1


Q ss_pred             CCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhh
Q 044593          172 GNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQ  211 (335)
Q Consensus       172 ~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s  211 (335)
                      .+.  +.+..+.+.++|..-+.+++..+.-....+.+++-
T Consensus       153 ~~~--~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~  190 (326)
T PRK14620        153 AGQ--NETLGSSLISKLSNENLKIIYSQDIIGVQIGAALK  190 (326)
T ss_pred             ecC--CHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHH
Confidence            222  23456788888988898888877666666555543

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.28  E-value=5.7e-10  Score=105.81  Aligned_cols=175  Identities=15%  Similarity=0.117  Sum_probs=110.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce--------------ecChhhHhhcCCCEEE
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF--------------FADLNDLCELHPDVVL   93 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~--------------~~~~~~~~~~~aDvVI   93 (335)
                      .+..|||+|||+|.||+.+|..|.++|++|+++.|++.  +...+.|+..              .++.+ .. ..+|+||
T Consensus         2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~-~~~D~vi   77 (313)
T PRK06249          2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAE-DM-PPCDWVL   77 (313)
T ss_pred             CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchh-hc-CCCCEEE
Confidence            35678999999999999999999999999999999862  2233444321              11222 23 5799999


Q ss_pred             EecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCC-cccc--cCCC-cceeccc
Q 044593           94 LSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPES-AKSS--WENL-PFMYDKV  169 (335)
Q Consensus        94 lavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~-~~~~--~~g~-~~i~~~~  169 (335)
                      +|||..++.++++.+. +.+++++.|+.+...- ...+.+.+.++.. +++.+-...|... ++..  ..+. ...+.. 
T Consensus        78 lavK~~~~~~~~~~l~-~~~~~~~~iv~lqNG~-~~~e~l~~~~~~~-~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~-  153 (313)
T PRK06249         78 VGLKTTANALLAPLIP-QVAAPDAKVLLLQNGL-GVEEQLREILPAE-HLLGGLCFICSNRVGPGVIHHLAYGRVNLGY-  153 (313)
T ss_pred             EEecCCChHhHHHHHh-hhcCCCCEEEEecCCC-CcHHHHHHHCCCC-cEEEEeeeEeEecCCCeEEEECCCCcEEEec-
Confidence            9999999999999885 6677887777764332 2346677777653 3443322222221 1100  1111 122211 


Q ss_pred             ccCCCh---hHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhh
Q 044593          170 RIGNDE---ERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQ  211 (335)
Q Consensus       170 ~~~~~~---~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s  211 (335)
                       ...+.   ...+..+.+.++|+..|..+...+.-++..+..++.
T Consensus       154 -~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~  197 (313)
T PRK06249        154 -HSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVW  197 (313)
T ss_pred             -CCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhhe
Confidence             11111   013456678889999999887777777777666543

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.27  E-value=2.1e-10  Score=111.76  Aligned_cols=171  Identities=16%  Similarity=0.119  Sum_probs=106.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh----------------CCCce--ecChhhHhhcCCCEEE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ----------------LNAPF--FADLNDLCELHPDVVL   93 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~----------------~g~~~--~~~~~~~~~~~aDvVI   93 (335)
                      |||+|||+|.||..+|..|+. ||+|++||++++..+.+.+                .+...  +.+..+++ .++|+||
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~-~~ad~vi   78 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAY-RDADYVI   78 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhh-cCCCEEE
Confidence            689999999999999988775 9999999999987765443                22222  23355555 7899999


Q ss_pred             EecCch-----------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           94 LSTSIL-----------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        94 lavp~~-----------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                      +|||..           .+.++++.+. . ++++++|++.|++.....+.+.+.+..  ..+..    +|+...++-. .
T Consensus        79 i~Vpt~~~~k~~~~dl~~v~~v~~~i~-~-~~~g~lVV~~STv~pgtt~~l~~~~~~--~~v~~----~PE~l~~G~a-~  149 (388)
T PRK15057         79 IATPTDYDPKTNYFNTSSVESVIKDVV-E-INPYAVMVIKSTVPVGFTAAMHKKYRT--ENIIF----SPEFLREGKA-L  149 (388)
T ss_pred             EeCCCCCccCCCCcChHHHHHHHHHHH-h-cCCCCEEEEeeecCCchHHHHHHHhhc--CcEEE----CcccccCCcc-c
Confidence            999965           4567777774 4 688999999999887777777765432  12333    4443211100 0


Q ss_pred             cceeccc--ccCCChhHHHHHHHHHHHHHh--cCCEEE-EeChHHHHHHHHHhhhhHHH
Q 044593          163 PFMYDKV--RIGNDEERIKRVDKFLDVFAK--EGCRMV-EMSCFDHDKYAAGSQFVTHT  216 (335)
Q Consensus       163 ~~i~~~~--~~~~~~~~~~~~~~v~~l~~~--~G~~v~-~~~~~eHD~~~A~~s~lph~  216 (335)
                      ..+..|.  ++|.+.   +..+.+.+++..  ++..+. .++.-+--+++.++.+.-+.
T Consensus       150 ~d~~~p~rvv~G~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a  205 (388)
T PRK15057        150 YDNLHPSRIVIGERS---ERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLA  205 (388)
T ss_pred             ccccCCCEEEEEcCc---HHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHH
Confidence            1111121  124432   234556666643  444333 34444555677776655443

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.21  E-value=1.8e-11  Score=103.65  Aligned_cols=116  Identities=15%  Similarity=0.139  Sum_probs=83.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcHH-HHHhCCC----ceecChhhHhhcCCCEEEEecCchhH-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSPA-VRQQLNA----PFFADLNDLCELHPDVVLLSTSILST-  101 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~-~a~~~g~----~~~~~~~~~~~~~aDvVIlavp~~~~-  101 (335)
                      .+.++|+|||+|.||.+++..|.+.| ++|+++||+++..+ .+.+.+.    ....+..+.+ +++|+||+|+|.... 
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELL-AEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhcc-ccCCEEEeCcCCCCCC
Confidence            35689999999999999999999986 78999999986543 3444443    1344556655 789999999999874 


Q ss_pred             -HHHHhhccccccCCccEEEEcCCCCch--HHHHHHhhCCCCCceEeccccC
Q 044593          102 -QSVLKSIPFQRLKRSTLFVDVLSVKEF--PRNLFLKYLPQDFDILCTHPMF  150 (335)
Q Consensus       102 -~~vl~~l~~~~l~~~~iVvd~~SvK~~--~~~~l~~~l~~~~~~v~~HPma  150 (335)
                       ..+...  ...++++++|+|+++++..  ..+.++   ..+..|+.+|||.
T Consensus        96 ~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~---~~g~~~v~g~~~~  142 (155)
T cd01065          96 GDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEAR---ALGAKTIDGLEML  142 (155)
T ss_pred             CCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHH---HCCCceeCCHHHH
Confidence             121111  1236789999999988763  333333   2466899999886

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=99.20  E-value=2.6e-09  Score=95.88  Aligned_cols=167  Identities=15%  Similarity=0.200  Sum_probs=122.7

Q ss_pred             CCeEEEEcccHH--------------------HHHHHHHHHHcCCeEEEEcCCCCc-----HHHHHhCCCceecChhhHh
Q 044593           31 SLKIAVIGFGNF--------------------GQFLAKAFARHHHTLLVHSRSDHS-----PAVRQQLNAPFFADLNDLC   85 (335)
Q Consensus        31 ~~kI~IIG~G~m--------------------G~siA~~L~~~G~~V~~~dr~~~~-----~~~a~~~g~~~~~~~~~~~   85 (335)
                      +|||+|.|+|+-                    |+.+|..|+++||+|++.|+|.+.     .+...+.|+..++|..+.+
T Consensus         1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa   80 (340)
T COG4007           1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAA   80 (340)
T ss_pred             CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhh
Confidence            478999999876                    888999999999999999988642     4556778999888777777


Q ss_pred             hcCCCEEEEecCch-hHHHHHhhccccccCCccEEEEcCCCCchHH-HHHHhhCC---CCCceEeccccCCCCCcccccC
Q 044593           86 ELHPDVVLLSTSIL-STQSVLKSIPFQRLKRSTLFVDVLSVKEFPR-NLFLKYLP---QDFDILCTHPMFGPESAKSSWE  160 (335)
Q Consensus        86 ~~~aDvVIlavp~~-~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~-~~l~~~l~---~~~~~v~~HPmaG~~~~~~~~~  160 (335)
                       +++++.|+-||.. .+-.+.++|. ++++.|++|.++|++....+ ..++..+.   .++.+-+.||-.-|....   +
T Consensus        81 -~~~Ei~VLFTPFGk~T~~Iarei~-~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~---h  155 (340)
T COG4007          81 -EHGEIHVLFTPFGKATFGIAREIL-EHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ---H  155 (340)
T ss_pred             -hcceEEEEecccchhhHHHHHHHH-hhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC---C
Confidence             8999999999999 6888999985 78999999999998866544 23344443   345577888866554422   2


Q ss_pred             CCcceeccc-ccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHH
Q 044593          161 NLPFMYDKV-RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDH  203 (335)
Q Consensus       161 g~~~i~~~~-~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eH  203 (335)
                      +. +++... .-+.+-..++.+++..++.++.|..+++++++--
T Consensus       156 ~~-yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv~  198 (340)
T COG4007         156 GH-YVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADVV  198 (340)
T ss_pred             ce-EEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHHH
Confidence            22 222111 0112224567889999999999999999986543

>PRK07574 formate dehydrogenase; Provisional

Probab=99.16  E-value=8.2e-10  Score=107.12  Aligned_cols=111  Identities=18%  Similarity=0.308  Sum_probs=86.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.|+..|++|.+|||+....+.....|+....++++++ ++||+|++++|... +..++.
T Consensus       189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell-~~aDvV~l~lPlt~~T~~li~  267 (385)
T PRK07574        189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLV-SVCDVVTIHCPLHPETEHLFD  267 (385)
T ss_pred             ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHh-hcCCEEEEcCCCCHHHHHHhC
Confidence            4568899999999999999999999999999999987444434456766667888988 89999999999765 566665


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      +-....+++|+++++++..+..-.+.+.+.+..
T Consensus       268 ~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s  300 (385)
T PRK07574        268 ADVLSRMKRGSYLVNTARGKIVDRDAVVRALES  300 (385)
T ss_pred             HHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence            321246899999999987765555666555543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.15  E-value=1.6e-09  Score=103.43  Aligned_cols=170  Identities=17%  Similarity=0.188  Sum_probs=114.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-------------------C-CceecChhhHhhcCCCE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-------------------N-APFFADLNDLCELHPDV   91 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-------------------g-~~~~~~~~~~~~~~aDv   91 (335)
                      |||+|||.|-+|...+.+|++.||+|+++|.+++..+...+-                   | +..++|..++. +++|+
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~-~~adv   79 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAV-KDADV   79 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHH-hcCCE
Confidence            899999999999999999999999999999998877644331                   1 23567777777 89999


Q ss_pred             EEEecCchh----------HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCC---c-eEeccccCCCCCccc
Q 044593           92 VLLSTSILS----------TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDF---D-ILCTHPMFGPESAKS  157 (335)
Q Consensus        92 VIlavp~~~----------~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~---~-~v~~HPmaG~~~~~~  157 (335)
                      +|+|||...          +..+++++. +.++..++|+.=|+|.....+.+.+.+....   . -|.+.|-|=.|..+ 
T Consensus        80 ~fIavgTP~~~dg~aDl~~V~ava~~i~-~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A-  157 (414)
T COG1004          80 VFIAVGTPPDEDGSADLSYVEAVAKDIG-EILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA-  157 (414)
T ss_pred             EEEEcCCCCCCCCCccHHHHHHHHHHHH-hhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch-
Confidence            999997643          677888885 5676668888888887666666665443211   1 24556666555321 


Q ss_pred             ccCCCcceecccc--cCCChhHHHHHHHHHHHHHhc---CCEEEEeChHHHHHHHHHhh
Q 044593          158 SWENLPFMYDKVR--IGNDEERIKRVDKFLDVFAKE---GCRMVEMSCFDHDKYAAGSQ  211 (335)
Q Consensus       158 ~~~g~~~i~~~~~--~~~~~~~~~~~~~v~~l~~~~---G~~v~~~~~~eHD~~~A~~s  211 (335)
                          ...++.|.+  +|....  ...+.++++++.+   ...+++++..+- +++.|.+
T Consensus       158 ----v~D~~~PdRIViG~~~~--~a~~~~~ely~~~~~~~~p~l~t~~~~A-E~IKyaa  209 (414)
T COG1004         158 ----VYDFLYPDRIVIGVRSE--RAAAVLRELYAPFLRQDVPILFTDLREA-ELIKYAA  209 (414)
T ss_pred             ----hhhccCCCeEEEccCCh--hHHHHHHHHHhhhhhcCCCEEEecchHH-HHHHHHH
Confidence                112333332  354322  2456667777664   777888877664 3555544

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.14  E-value=6.7e-09  Score=98.17  Aligned_cols=236  Identities=13%  Similarity=0.113  Sum_probs=139.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec------------ChhhHhhcCCCEEEEecCch
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA------------DLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~------------~~~~~~~~~aDvVIlavp~~   99 (335)
                      |||+|+|+|.||+.++..|.++|++|+++.|++. .+..++.|+....            +..+.. ..+|+||++|+..
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~-~~~Dlviv~vKa~   78 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEAL-GPADLVIVTVKAY   78 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhc-CCCCEEEEEeccc
Confidence            7999999999999999999999999999998876 5545565653211            112222 5799999999999


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEe-ccccCCCCCcccc--cCC-CcceecccccCCCh
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC-THPMFGPESAKSS--WEN-LPFMYDKVRIGNDE  175 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~-~HPmaG~~~~~~~--~~g-~~~i~~~~~~~~~~  175 (335)
                      ++.++++.+. +.+++.+.|+-+-..-+ ..+.+.+.++.. +++. .-+..+...++..  +.| -.+.+..    -++
T Consensus        79 q~~~al~~l~-~~~~~~t~vl~lqNG~g-~~e~l~~~~~~~-~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~----~~~  151 (307)
T COG1893          79 QLEEALPSLA-PLLGPNTVVLFLQNGLG-HEEELRKILPKE-TVLGGVTTHGAVREGPGHVVHTGLGDTVIGE----LRG  151 (307)
T ss_pred             cHHHHHHHhh-hcCCCCcEEEEEeCCCc-HHHHHHHhCCcc-eEEEEEeeeeeEecCCceEEEecCCcEEEcc----CCC
Confidence            9999999996 78899987775533222 335777777654 2332 2222221111111  122 1112211    111


Q ss_pred             hHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHH-HHHHH--------------------HHcC-----CCCC
Q 044593          176 ERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHT-MGRVL--------------------ERFG-----VESS  229 (335)
Q Consensus       176 ~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~-la~aL--------------------~~~~-----~~~~  229 (335)
                      ...+.++.+.++|+..|..+.+.+.-++..+-.++-..+.= +...|                    +...     ..-.
T Consensus       152 ~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~  231 (307)
T COG1893         152 GRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGV  231 (307)
T ss_pred             CchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccC
Confidence            22356788888899999998888777777765554333221 11000                    0000     0001


Q ss_pred             CCCCcchhhHHHHHHHh-hCCChHhHHHHHhhCHhHHHHHHHHHHHHH
Q 044593          230 PINTKGYETLLDLVDNT-KGDSFDLYYGLFMYNKNSLEQLQRLEMAFE  276 (335)
Q Consensus       230 ~~~~~gf~~~~rl~~~i-a~~~~~lw~~I~~~N~~~~~~l~~~~~~l~  276 (335)
                      .+.-..++.+.+....+ +..-+.|+.|+....+-.++.|.-+.-.+.
T Consensus       232 ~~~~~~~~~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i~G~vv~~a  279 (307)
T COG1893         232 ELPEEVVERVLAVIRATDAENYSSMLQDLEKGRPTEIDAINGAVVRLA  279 (307)
T ss_pred             CCCHHHHHHHHHHHHhcccccCchHHHHHHcCCcccHHHHhhHHHHHH
Confidence            12222244455555555 466778888887654434566655544433

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.13  E-value=9.9e-11  Score=102.08  Aligned_cols=110  Identities=16%  Similarity=0.313  Sum_probs=78.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.++..|++|++|||+..........++ ...++++++ ++||+|++++|... +..++.
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell-~~aDiv~~~~plt~~T~~li~  110 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELL-AQADIVSLHLPLTPETRGLIN  110 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHH-HH-SEEEE-SSSSTTTTTSBS
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhc-chhhhhhhhhccccccceeee
Confidence            456899999999999999999999999999999999876544555565 445888888 78999999999643 333333


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      .-....+++|+++++++-....-.+.+.+.+..
T Consensus       111 ~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~  143 (178)
T PF02826_consen  111 AEFLAKMKPGAVLVNVARGELVDEDALLDALES  143 (178)
T ss_dssp             HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred             eeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence            211245789999999986655545556555543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.11  E-value=8.9e-10  Score=104.39  Aligned_cols=170  Identities=14%  Similarity=0.146  Sum_probs=119.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHH-HHhC----CCceecChhhHhh--cCCCEEEEecCchh-H
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAV-RQQL----NAPFFADLNDLCE--LHPDVVLLSTSILS-T  101 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~-a~~~----g~~~~~~~~~~~~--~~aDvVIlavp~~~-~  101 (335)
                      ....||+||+|.||+.+|..+.++|+.|.+|+|+.+..+. ..+.    .+....++++++.  +...-|++.|.... +
T Consensus         2 ~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~V   81 (473)
T COG0362           2 MKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPV   81 (473)
T ss_pred             CccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcH
Confidence            4567999999999999999999999999999999876543 3332    3445667777641  57888999888753 6


Q ss_pred             HHHHhhccccccCCccEEEEcCCCC-chHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHH
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSVK-EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKR  180 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~SvK-~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~  180 (335)
                      ..++++|. |++.+|.+|+|-+++. ..+.+..++.-..+..|||+ -+.|.|.++  ..| |-++.    ++   ++++
T Consensus        82 D~~I~~L~-p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~-GVSGGEeGA--~~G-PSiMp----GG---~~ea  149 (473)
T COG0362          82 DAVIEQLL-PLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGM-GVSGGEEGA--RHG-PSIMP----GG---QKEA  149 (473)
T ss_pred             HHHHHHHH-hhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEec-ccccccccc--ccC-CCcCC----CC---CHHH
Confidence            78889995 8999999999987654 34556666555678899986 477777543  133 33431    33   3568


Q ss_pred             HHHHHHHHHhcCCE------EEEeChHHHHHHHHHhh
Q 044593          181 VDKFLDVFAKEGCR------MVEMSCFDHDKYAAGSQ  211 (335)
Q Consensus       181 ~~~v~~l~~~~G~~------v~~~~~~eHD~~~A~~s  211 (335)
                      ++.++++|..+.++      +.++.+.--...+.+++
T Consensus       150 y~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVH  186 (473)
T COG0362         150 YELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVH  186 (473)
T ss_pred             HHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeee
Confidence            88889988877543      34555544333444433

>PLN03139 formate dehydrogenase; Provisional

Probab=99.11  E-value=2.4e-09  Score=103.83  Aligned_cols=111  Identities=19%  Similarity=0.322  Sum_probs=86.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.|+..|++|.+||++....+...+.|+....++++++ .+||+|++++|... +..++.
T Consensus       196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~sDvV~l~lPlt~~T~~li~  274 (386)
T PLN03139        196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAML-PKCDVVVINTPLTEKTRGMFN  274 (386)
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHH-hhCCEEEEeCCCCHHHHHHhC
Confidence            4578999999999999999999999999999999986544444556776666889988 89999999999654 566664


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      .-....+++|+++++++-....-.+.+.+.+..
T Consensus       275 ~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s  307 (386)
T PLN03139        275 KERIAKMKKGVLIVNNARGAIMDTQAVADACSS  307 (386)
T ss_pred             HHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence            321356899999999987655555666666543

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.08  E-value=4.5e-09  Score=104.73  Aligned_cols=175  Identities=19%  Similarity=0.157  Sum_probs=109.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHhCC-------------------CceecChhhHhhcCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPAVRQQLN-------------------APFFADLNDLCELHP   89 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~~a~~~g-------------------~~~~~~~~~~~~~~a   89 (335)
                      +|||+|||+|.+|..+|..|+++|  ++|+++|.+++..+...+-+                   +..+++..+.+ .++
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i-~~a   79 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHV-AEA   79 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHH-hcC
Confidence            589999999999999999999885  78999999987766433211                   22445556555 799


Q ss_pred             CEEEEecCch---------------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC---CC-ceEeccccC
Q 044593           90 DVVLLSTSIL---------------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ---DF-DILCTHPMF  150 (335)
Q Consensus        90 DvVIlavp~~---------------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~---~~-~~v~~HPma  150 (335)
                      |++|+|||..               .+.++++++. +.++++++|+--+++...+.+.+.+.+..   +. .++...|-+
T Consensus        80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~-~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PEr  158 (473)
T PLN02353         80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIA-DVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEF  158 (473)
T ss_pred             CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHH-hhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCc
Confidence            9999998622               3577888885 67889999887777665555555443321   22 245555655


Q ss_pred             CCCCcc-cccCCCcceecccccCCC--hhHHHHHHHHHHHHHhcC--CEEEEeChHHHHHHHHHhhh
Q 044593          151 GPESAK-SSWENLPFMYDKVRIGND--EERIKRVDKFLDVFAKEG--CRMVEMSCFDHDKYAAGSQF  212 (335)
Q Consensus       151 G~~~~~-~~~~g~~~i~~~~~~~~~--~~~~~~~~~v~~l~~~~G--~~v~~~~~~eHD~~~A~~s~  212 (335)
                      -.+-.. ..+...+-++    +++.  +...+..+.++++++.+-  ..++.++++ .-+++.++..
T Consensus       159 l~~G~a~~d~~~p~riV----iG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~-~AE~~K~~eN  220 (473)
T PLN02353        159 LAEGTAIEDLFKPDRVL----IGGRETPEGQKAVQALKDVYAHWVPEERIITTNLW-SAELSKLAAN  220 (473)
T ss_pred             cCCCCcccccCCCCEEE----EccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHH-HHHHHHHHHH
Confidence            433210 1111122121    2432  222446678888888773  345555554 3455555443

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.07  E-value=1.9e-10  Score=100.95  Aligned_cols=98  Identities=26%  Similarity=0.284  Sum_probs=68.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------------------CCceecChhhHhhcCCCE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------------------NAPFFADLNDLCELHPDV   91 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------------------g~~~~~~~~~~~~~~aDv   91 (335)
                      |||+|||+|.+|..+|..|++.||+|+++|.|++..+...+-                    .+..+++..+.+ .++|+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai-~~adv   79 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAI-KDADV   79 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHH-HH-SE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhh-hccce
Confidence            899999999999999999999999999999998876643321                    112345666655 78999


Q ss_pred             EEEecCchh----------HHHHHhhccccccCCccEEEEcCCCCchHHH
Q 044593           92 VLLSTSILS----------TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRN  131 (335)
Q Consensus        92 VIlavp~~~----------~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~  131 (335)
                      +|+|+|...          +.++++.+. +.++++++|+--|++.....+
T Consensus        80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~-~~l~~~~lvV~~STvppGtt~  128 (185)
T PF03721_consen   80 VFICVPTPSDEDGSPDLSYVESAIESIA-PVLRPGDLVVIESTVPPGTTE  128 (185)
T ss_dssp             EEE----EBETTTSBETHHHHHHHHHHH-HHHCSCEEEEESSSSSTTHHH
T ss_pred             EEEecCCCccccCCccHHHHHHHHHHHH-HHHhhcceEEEccEEEEeeeh
Confidence            999998542          677888885 678899999988877765555

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.05  E-value=9e-10  Score=105.29  Aligned_cols=109  Identities=23%  Similarity=0.345  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.|+..|++|.+|||++.... ....|+. ..++++++ ++||+|++++|... +..++.
T Consensus       147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell-~~aDiV~l~lP~t~~T~~~i~  223 (333)
T PRK13243        147 DVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELL-RESDFVSLHVPLTKETYHMIN  223 (333)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHH-hhCCEEEEeCCCChHHhhccC
Confidence            35689999999999999999999999999999999875432 3344554 34788887 89999999999765 555553


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD  140 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~  140 (335)
                       +. ...+++++++++++.......+++.+.+..+
T Consensus       224 ~~~-~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g  257 (333)
T PRK13243        224 EER-LKLMKPTAILVNTARGKVVDTKALVKALKEG  257 (333)
T ss_pred             HHH-HhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence             22 2468999999999877655556666666443

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.03  E-value=1.5e-09  Score=103.54  Aligned_cols=106  Identities=14%  Similarity=0.232  Sum_probs=79.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH-
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL-  105 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl-  105 (335)
                      ...+++|+|||+|.||+++|+.|+..|++|++||+++.....    ......++++++ ++||+|++++|... +..++ 
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~~~~~~l~ell-~~aDiVil~lP~t~~t~~li~  217 (330)
T PRK12480        143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FLTYKDSVKEAI-KDADIISLHVPANKESYHLFD  217 (330)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hhhccCCHHHHH-hcCCEEEEeCCCcHHHHHHHh
Confidence            356789999999999999999999999999999998754321    122345778887 89999999999875 34444 


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      +.+ ...+++|+++++++-....-...+.+.+..
T Consensus       218 ~~~-l~~mk~gavlIN~aRG~~vd~~aL~~aL~~  250 (330)
T PRK12480        218 KAM-FDHVKKGAILVNAARGAVINTPDLIAAVND  250 (330)
T ss_pred             HHH-HhcCCCCcEEEEcCCccccCHHHHHHHHHc
Confidence            333 356889999999986554444555555543

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.03  E-value=1.4e-08  Score=91.53  Aligned_cols=173  Identities=18%  Similarity=0.176  Sum_probs=132.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC----eEEEEcCCCCcHHH-HHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH----TLLVHSRSDHSPAV-RQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~----~V~~~dr~~~~~~~-a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      |+|++||.|.|..++++.+.+.|.    +++.+-.+...... .+..|+..+.+..+.. +.+|++++|+++..+..++.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~-~~s~v~~~svKp~~i~~vls   79 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVL-QASDVVFLSVKPQVIESVLS   79 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHH-hhccceeEeecchhHHHHhh
Confidence            689999999999999999999985    67777775544443 7788887665556666 78999999999999999999


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD  186 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~  186 (335)
                      ++. +.+..+.+|+.+.-.+  .+..+++.++...+++...|......+    .|.. ++..   ++ ....++.+.+++
T Consensus        80 ~~~-~~~~~~~iivS~aaG~--tl~~l~~~l~~~~rviRvmpNtp~~v~----eg~s-v~~~---g~-~~~~~D~~l~~~  147 (267)
T KOG3124|consen   80 EIK-PKVSKGKIIVSVAAGK--TLSSLESKLSPPTRVIRVMPNTPSVVG----EGAS-VYAI---GC-HATNEDLELVEE  147 (267)
T ss_pred             cCc-cccccceEEEEEeecc--cHHHHHHhcCCCCceEEecCCChhhhh----cCcE-EEee---CC-CcchhhHHHHHH
Confidence            995 5577888999886553  346777777766678998887766554    3444 2221   22 233445688899


Q ss_pred             HHHhcCCEEEEeChHHHHHHHHHhhhhHHHHH
Q 044593          187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMG  218 (335)
Q Consensus       187 l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la  218 (335)
                      ++..+|. +..+++.--|.++++.-.-|-..-
T Consensus       148 ll~~vG~-~~evpE~~iDavTgLsGSgPAy~f  178 (267)
T KOG3124|consen  148 LLSAVGL-CEEVPEKCIDAVTGLSGSGPAYVF  178 (267)
T ss_pred             HHHhcCc-ceeCcHHhhhHHhhccCCcHHHHH
Confidence            9999994 888999999999999888877543

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.00  E-value=1.7e-09  Score=101.57  Aligned_cols=161  Identities=16%  Similarity=0.201  Sum_probs=104.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK-  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~-  106 (335)
                      ..+.++|+|||+|.||..+|+.|+..|++|+++++.....+.+...|+.. .++++++ +.||+|++++|......++. 
T Consensus        13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaa-k~ADVV~llLPd~~t~~V~~~   90 (335)
T PRK13403         13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAV-RTAQVVQMLLPDEQQAHVYKA   90 (335)
T ss_pred             hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHH-hcCCEEEEeCCChHHHHHHHH
Confidence            45788999999999999999999999999999987655555566778754 3788888 89999999999877777774 


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhh-CCCCCceEeccccCCCCCccccc---CCCcceecccccCCChhHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKY-LPQDFDILCTHPMFGPESAKSSW---ENLPFMYDKVRIGNDEERIKRVD  182 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~-l~~~~~~v~~HPmaG~~~~~~~~---~g~~~i~~~~~~~~~~~~~~~~~  182 (335)
                      ++ .+.+++|++++=.-+-.-    ..... .|.++.++-.-|=...+.-.+.|   .|.|.++.   +-.|. +-.+.+
T Consensus        91 ei-l~~MK~GaiL~f~hgfni----~~~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~a---v~qd~-sg~a~~  161 (335)
T PRK13403         91 EV-EENLREGQMLLFSHGFNI----HFGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVA---VHQDA-TGTALH  161 (335)
T ss_pred             HH-HhcCCCCCEEEECCCcce----ecCceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEE---EEECC-CCcHHH
Confidence            45 367899987765432211    01112 24566655444422111101111   46676653   11111 112445


Q ss_pred             HHHHHHHhcCCE---EEEeC
Q 044593          183 KFLDVFAKEGCR---MVEMS  199 (335)
Q Consensus       183 ~v~~l~~~~G~~---v~~~~  199 (335)
                      ......+.+|+.   ++..+
T Consensus       162 ~ala~a~~iG~~ragv~~tt  181 (335)
T PRK13403        162 VALAYAKGVGCTRAGVIETT  181 (335)
T ss_pred             HHHHHHHHcCCCceeEEecc
Confidence            666777888876   55554

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=98.99  E-value=5.7e-09  Score=99.16  Aligned_cols=111  Identities=13%  Similarity=0.209  Sum_probs=83.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...++++||||+|.||+.+|..++..|++|.+||+..... .....+.....++++++ ++||+|++.+|... +..++.
T Consensus       139 el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL-~~sDiv~lh~PlT~eT~g~i~  216 (324)
T COG0111         139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELL-AEADILTLHLPLTPETRGLIN  216 (324)
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHH-hhCCEEEEcCCCCcchhcccC
Confidence            3458899999999999999999999999999999943222 23344566667899998 89999999999764 666665


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD  140 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~  140 (335)
                      .-....+|+|+++++++-......+.+.+.+..+
T Consensus       217 ~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G  250 (324)
T COG0111         217 AEELAKMKPGAILINAARGGVVDEDALLAALDSG  250 (324)
T ss_pred             HHHHhhCCCCeEEEECCCcceecHHHHHHHHHcC
Confidence            3323468999999999866555555666555443

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.97  E-value=1.4e-08  Score=95.83  Aligned_cols=106  Identities=16%  Similarity=0.280  Sum_probs=78.9

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc-eecChhhHhhcCCCEEEEecCchh-HHHH
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP-FFADLNDLCELHPDVVLLSTSILS-TQSV  104 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~-~~~~~~~~~~~~aDvVIlavp~~~-~~~v  104 (335)
                      ....+++|||||+|.||..+|+.++..|++|++|||+...      .+.. ...++++++ .+||+|++++|... +..+
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell-~~aDiv~~~lp~t~~T~~l  190 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIM-KKSDFVLISLPLTDETRGM  190 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHH-hhCCEEEECCCCCchhhcC
Confidence            3567899999999999999999999889999999997532      1322 245788888 89999999999764 4555


Q ss_pred             HhhccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          105 LKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      +..=....+++|+++++++.....-.+.+.+.+..
T Consensus       191 i~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~  225 (303)
T PRK06436        191 INSKMLSLFRKGLAIINVARADVVDKNDMLNFLRN  225 (303)
T ss_pred             cCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence            44211245889999999987655555566555543

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.97  E-value=2.1e-09  Score=91.01  Aligned_cols=91  Identities=22%  Similarity=0.206  Sum_probs=70.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-cHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH-hh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-SPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL-KS  107 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl-~~  107 (335)
                      +.++|+|||+|..|.+.|..|++.|++|++..|... +.+.|++.|.... +..+++ +++|+|++.+|+....+++ ++
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv-~~aDvV~~L~PD~~q~~vy~~~   80 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAV-KKADVVMLLLPDEVQPEVYEEE   80 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHH-HC-SEEEE-S-HHHHHHHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHH-hhCCEEEEeCChHHHHHHHHHH
Confidence            468999999999999999999999999998888876 7788999999765 456666 8999999999999999998 66


Q ss_pred             ccccccCCccEEEEcC
Q 044593          108 IPFQRLKRSTLFVDVL  123 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~  123 (335)
                      +. +.+++|+.++-.-
T Consensus        81 I~-p~l~~G~~L~fah   95 (165)
T PF07991_consen   81 IA-PNLKPGATLVFAH   95 (165)
T ss_dssp             HH-HHS-TT-EEEESS
T ss_pred             HH-hhCCCCCEEEeCC
Confidence            74 7899998877543

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.96  E-value=2e-08  Score=95.71  Aligned_cols=170  Identities=17%  Similarity=0.117  Sum_probs=102.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-------------------CC-CceecChhhHhhcCCCE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-------------------LN-APFFADLNDLCELHPDV   91 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-------------------~g-~~~~~~~~~~~~~~aDv   91 (335)
                      ++|+|||+|-||--+|..++++|++|+++|.|+...+...+                   .| +..+++..++  +.||+
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l--~~~dv   87 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL--KECDV   87 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc--ccCCE
Confidence            89999999999999999999999999999999876653322                   12 2345666665  68999


Q ss_pred             EEEecCchh----------HHHHHhhccccccCCccEEEEcCCCCchHHHHH----Hhh---CCCCCceEeccccCCCCC
Q 044593           92 VLLSTSILS----------TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLF----LKY---LPQDFDILCTHPMFGPES  154 (335)
Q Consensus        92 VIlavp~~~----------~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l----~~~---l~~~~~~v~~HPmaG~~~  154 (335)
                      +|+|||...          +....+.++ +.+++|.+|+-=|++.....+.+    .+.   |..+..|--.|   .||.
T Consensus        88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa-~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay---sPER  163 (436)
T COG0677          88 FIICVPTPLKKYREPDLSYVESAARSIA-PVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY---SPER  163 (436)
T ss_pred             EEEEecCCcCCCCCCChHHHHHHHHHHH-HhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee---Cccc
Confidence            999998642          566777785 78999998886555544333333    222   11112232222   3443


Q ss_pred             cccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593          155 AKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG  209 (335)
Q Consensus       155 ~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~  209 (335)
                      -..+-.-.-..-.+.++++.  ++...+....|.+.+=-.++.++...-.+++.+
T Consensus       164 v~PG~~~~el~~~~kVIgG~--tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl  216 (436)
T COG0677         164 VLPGNVLKELVNNPKVIGGV--TPKCAELAAALYKTIVEGVIPVTSARTAEMVKL  216 (436)
T ss_pred             cCCCchhhhhhcCCceeecC--CHHHHHHHHHHHHHheEEEEEcCChHHHHHHHH
Confidence            21110000111112234433  244556667777776545666654444444444

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=98.95  E-value=2.5e-08  Score=94.27  Aligned_cols=171  Identities=13%  Similarity=0.102  Sum_probs=107.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-CCCceec-----------ChhhHhhcCCCEEEEecCc
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-LNAPFFA-----------DLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-~g~~~~~-----------~~~~~~~~~aDvVIlavp~   98 (335)
                      .|||+|||+|.||+.+|..|.+.|++|++++|+++..+..++ .|+....           ...+.. ..+|+||+||+.
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~-~~~D~viv~vK~   80 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAA-EPIHRLLLACKA   80 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccc-cccCEEEEECCH
Confidence            479999999999999999999999999999998765554443 3442110           001112 468999999999


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCC-ccc--ccCCC-cceecccccCCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPES-AKS--SWENL-PFMYDKVRIGND  174 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~-~~~--~~~g~-~~i~~~~~~~~~  174 (335)
                      ..+.++++.+. +.+.+++.|+-+-+.- ...+.+.+.++.. +++++--..|... ++.  ...+. .+.+     +..
T Consensus        81 ~~~~~al~~l~-~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~-~v~~g~~~~ga~~~~pg~v~~~~~g~~~~-----G~~  152 (305)
T PRK05708         81 YDAEPAVASLA-HRLAPGAELLLLQNGL-GSQDAVAARVPHA-RCIFASSTEGAFRDGDWRVVFAGHGFTWL-----GDP  152 (305)
T ss_pred             HhHHHHHHHHH-hhCCCCCEEEEEeCCC-CCHHHHHHhCCCC-cEEEEEeeeceecCCCCEEEEeceEEEEE-----cCC
Confidence            99999999995 7888888877663322 2335566677654 2333222222221 110  01121 1122     221


Q ss_pred             hhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhh
Q 044593          175 EERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQF  212 (335)
Q Consensus       175 ~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~  212 (335)
                      .  .+..+.+.++|...|..+...+.-+...+..++..
T Consensus       153 ~--~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N  188 (305)
T PRK05708        153 R--NPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALN  188 (305)
T ss_pred             C--CcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHH
Confidence            1  12356677888888887776666677777666543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.93  E-value=5.2e-09  Score=98.04  Aligned_cols=94  Identities=22%  Similarity=0.323  Sum_probs=73.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee--cChhhHhhcCCCEEEEecCchhH-HHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF--ADLNDLCELHPDVVLLSTSILST-QSVL  105 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~~-~~vl  105 (335)
                      ..+.+|+|||+|.||..+|+.|+..|++|++++|+++....+.+.|....  .++.+.+ .++|+||.++|...+ .+.+
T Consensus       149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l-~~aDiVint~P~~ii~~~~l  227 (287)
T TIGR02853       149 IHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKV-AEIDIVINTIPALVLTADVL  227 (287)
T ss_pred             CCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHh-ccCCEEEECCChHHhCHHHH
Confidence            35689999999999999999999999999999999876655666665432  3455666 799999999997643 2222


Q ss_pred             hhccccccCCccEEEEcCCCCch
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEF  128 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~  128 (335)
                           ..++++++|+|+++.+..
T Consensus       228 -----~~~k~~aliIDlas~Pg~  245 (287)
T TIGR02853       228 -----SKLPKHAVIIDLASKPGG  245 (287)
T ss_pred             -----hcCCCCeEEEEeCcCCCC
Confidence                 346789999999987654

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.93  E-value=4.8e-09  Score=100.32  Aligned_cols=106  Identities=20%  Similarity=0.288  Sum_probs=76.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHH-HHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAF-ARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQ-SVL  105 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L-~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~-~vl  105 (335)
                      ...+++|+|||+|.||+++|+.| ...|++|++||+++....   ..++....++++++ +++|+|++++|..... .++
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell-~~aDvIvl~lP~t~~t~~li  218 (332)
T PRK08605        143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAV-EGADIVTLHMPATKYNHYLF  218 (332)
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHH-HhCCEEEEeCCCCcchhhhc
Confidence            34678999999999999999999 456889999999865321   12334445788888 8999999999987643 333


Q ss_pred             h-hccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593          106 K-SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus       106 ~-~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                      . +. .+.+++|+++++++.....-...+.+.+.
T Consensus       219 ~~~~-l~~mk~gailIN~sRG~~vd~~aL~~aL~  251 (332)
T PRK08605        219 NADL-FKHFKKGAVFVNCARGSLVDTKALLDALD  251 (332)
T ss_pred             CHHH-HhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            2 22 24588999999998765444455544443

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.92  E-value=2.1e-08  Score=95.02  Aligned_cols=109  Identities=16%  Similarity=0.162  Sum_probs=78.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~  107 (335)
                      ...++|||||+|.||..+|+.|+..|++|++||++.+.......  .....++++++ .+||+|++++|... +..++..
T Consensus       134 l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l-~~aDvvv~~lPlt~~T~~li~~  210 (312)
T PRK15469        134 REDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFL-SQTRVLINLLPNTPETVGIINQ  210 (312)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHH-hcCCEEEECCCCCHHHHHHhHH
Confidence            46789999999999999999999999999999987643210111  11234677887 89999999999764 5566543


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD  140 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~  140 (335)
                      -....+++|+++++++-....-.+.+.+.+..+
T Consensus       211 ~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g  243 (312)
T PRK15469        211 QLLEQLPDGAYLLNLARGVHVVEDDLLAALDSG  243 (312)
T ss_pred             HHHhcCCCCcEEEECCCccccCHHHHHHHHhcC
Confidence            112468899999999755444445555555443

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.90  E-value=3.9e-08  Score=93.33  Aligned_cols=145  Identities=17%  Similarity=0.146  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHcCCeEEEEcCCCCc-------HHHH-----------HhCCC-------------ceecC--hhhHhhcC
Q 044593           42 FGQFLAKAFARHHHTLLVHSRSDHS-------PAVR-----------QQLNA-------------PFFAD--LNDLCELH   88 (335)
Q Consensus        42 mG~siA~~L~~~G~~V~~~dr~~~~-------~~~a-----------~~~g~-------------~~~~~--~~~~~~~~   88 (335)
                      ||..||..++.+|++|++||++++.       .+.+           .+.|.             ...++  ..+.+ ++
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~-~~   79 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADAL-AD   79 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHh-cc
Confidence            7999999999999999999999853       1111           11221             22322  44556 89


Q ss_pred             CCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCccee
Q 044593           89 PDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMY  166 (335)
Q Consensus        89 aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~  166 (335)
                      ||+||.|+|.+.  ...++.++. ..++++++|..++|.  .....+.+.+...-++++.|+...|..-       + ++
T Consensus        80 aD~ViEav~E~~~~K~~~f~~l~-~~~~~~~ilaSntS~--~~~~~la~~~~~p~r~~g~Hf~~Pp~~~-------~-lv  148 (314)
T PRK08269         80 ADLVFEAVPEVLDAKREALRWLG-RHVDADAIIASTTST--FLVTDLQRHVAHPERFLNAHWLNPAYLM-------P-LV  148 (314)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHH-hhCCCCcEEEEcccc--CCHHHHHhhcCCcccEEEEecCCccccC-------c-eE
Confidence            999999999885  356777874 578899999776665  4556677666555579999988776632       1 11


Q ss_pred             cccccCCChhHHHHHHHHHHHHHhcCCEEEEeCh
Q 044593          167 DKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSC  200 (335)
Q Consensus       167 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~  200 (335)
                      +  +++++.++++.++.+.++++.+|.+++++..
T Consensus       149 E--Vv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d  180 (314)
T PRK08269        149 E--VSPSDATDPAVVDRLAALLERIGKVPVVCGP  180 (314)
T ss_pred             E--EeCCCCCCHHHHHHHHHHHHHcCCcEEEecC
Confidence            1  1345566778899999999999999988853

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.87  E-value=3.8e-09  Score=93.40  Aligned_cols=162  Identities=17%  Similarity=0.079  Sum_probs=113.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CCC--------------ceecChhhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LNA--------------PFFADLNDL   84 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g~--------------~~~~~~~~~   84 (335)
                      +.-||+|+|.|.+|+++|..|+..||+|..||..++....|.+           .|.              ..++++.++
T Consensus         2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~   81 (313)
T KOG2305|consen    2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL   81 (313)
T ss_pred             CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence            4569999999999999999999999999999998765443321           222              246788888


Q ss_pred             hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                      . +++=.|--|+|.+-  -..+++++. ..+.+.+++...+|+  .....+.+.+-+..+.+..||+..|-+-+     .
T Consensus        82 v-k~Ai~iQEcvpE~L~lkk~ly~qlD-~i~d~~tIlaSSTSt--~mpS~~s~gL~~k~q~lvaHPvNPPyfiP-----L  152 (313)
T KOG2305|consen   82 V-KGAIHIQECVPEDLNLKKQLYKQLD-EIADPTTILASSTST--FMPSKFSAGLINKEQCLVAHPVNPPYFIP-----L  152 (313)
T ss_pred             H-hhhhhHHhhchHhhHHHHHHHHHHH-HhcCCceEEeccccc--cChHHHhhhhhhhhheeEecCCCCCcccc-----h
Confidence            8 77877788999875  356677774 445676666655444  44455555454445678889998776432     1


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHH
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDK  205 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~  205 (335)
                      .-+     ++.+.+.++.+++..++.+++|-+++....+.-..
T Consensus       153 vEl-----VPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf  190 (313)
T KOG2305|consen  153 VEL-----VPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGF  190 (313)
T ss_pred             hee-----ccCCCCChhHHHHHHHHHHHhCCCCcccccccccc
Confidence            111     24455566788899999999999988887665443

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=98.86  E-value=9.4e-09  Score=104.02  Aligned_cols=110  Identities=18%  Similarity=0.299  Sum_probs=83.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.++..|++|++||+... .+.+.+.|+....++++++ .+||+|++++|.. .+..++.
T Consensus       135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell-~~aDvV~l~lPlt~~T~~li~  212 (525)
T TIGR01327       135 ELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYIS-PERAEQLGVELVDDLDELL-ARADFITVHTPLTPETRGLIG  212 (525)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCCEEcCCHHHHH-hhCCEEEEccCCChhhccCcC
Confidence            45678999999999999999999999999999998643 2334566776556788988 8999999999976 3555552


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      .=....+++++++++++.....-.+++.+.+..
T Consensus       213 ~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~  245 (525)
T TIGR01327       213 AEELAKMKKGVIIVNCARGGIIDEAALYEALEE  245 (525)
T ss_pred             HHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHc
Confidence            111245889999999987655555566555543

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.84  E-value=2.9e-08  Score=96.21  Aligned_cols=104  Identities=16%  Similarity=0.201  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-----HHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-----TQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-----~~~  103 (335)
                      ..+++|||||+|.||+.+|+.+...|++|.+||+......     +.....++++++ ++||+|++++|...     +..
T Consensus       114 l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~-----~~~~~~~l~ell-~~aDiV~lh~Plt~~g~~~T~~  187 (381)
T PRK00257        114 LAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE-----GDGDFVSLERIL-EECDVISLHTPLTKEGEHPTRH  187 (381)
T ss_pred             cCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc-----cCccccCHHHHH-hhCCEEEEeCcCCCCccccccc
Confidence            4678999999999999999999999999999998643211     222345788888 79999999999753     445


Q ss_pred             HHhhccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                      ++.+-....+++|+++++++-....-.+++.+.+.
T Consensus       188 li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~  222 (381)
T PRK00257        188 LLDEAFLASLRPGAWLINASRGAVVDNQALREALL  222 (381)
T ss_pred             cCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence            55322124588999999998665444455655553

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.84  E-value=1.5e-08  Score=102.57  Aligned_cols=108  Identities=15%  Similarity=0.215  Sum_probs=83.1

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.++..|++|++||+.... +.+...|+... ++++++ ++||+|++++|... +..++.
T Consensus       137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell-~~aDiV~l~lP~t~~t~~li~  213 (526)
T PRK13581        137 ELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELL-ARADFITLHTPLTPETRGLIG  213 (526)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHH-hhCCEEEEccCCChHhhcCcC
Confidence            346889999999999999999999999999999987542 23455677655 788888 89999999999863 555553


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                       +. ...+++++++++++.....-.+.+.+.+..
T Consensus       214 ~~~-l~~mk~ga~lIN~aRG~~vde~aL~~aL~~  246 (526)
T PRK13581        214 AEE-LAKMKPGVRIINCARGGIIDEAALAEALKS  246 (526)
T ss_pred             HHH-HhcCCCCeEEEECCCCceeCHHHHHHHHhc
Confidence             22 246889999999987655555666666644

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=98.84  E-value=2e-08  Score=95.35  Aligned_cols=109  Identities=18%  Similarity=0.362  Sum_probs=81.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...++++||||+|.||..+|+.++..|++|..|||++. .+...+.+..+.. +++++ +++|+|++.+|... +..++.
T Consensus       143 ~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell-~~sDii~l~~Plt~~T~hLin  219 (324)
T COG1052         143 DLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELL-AESDIISLHCPLTPETRHLIN  219 (324)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHH-HhCCEEEEeCCCChHHhhhcC
Confidence            35689999999999999999999988899999999987 3333444455555 88888 89999999999775 555554


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      .-....++++.++++++-....-.+++-+.+..
T Consensus       220 ~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~  252 (324)
T COG1052         220 AEELAKMKPGAILVNTARGGLVDEQALIDALKS  252 (324)
T ss_pred             HHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence            322246889999999975544444555555543

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.83  E-value=6.1e-08  Score=95.19  Aligned_cols=107  Identities=16%  Similarity=0.219  Sum_probs=79.8

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.++..|++|.+||+.+...    ..++....++++++ ++||+|++++|... +..++.
T Consensus       148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell-~~sDiVslh~Plt~~T~~li~  222 (409)
T PRK11790        148 EVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELL-AQSDVVSLHVPETPSTKNMIG  222 (409)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHH-hhCCEEEEcCCCChHHhhccC
Confidence            4578999999999999999999999999999999864321    12334445789998 89999999999754 556664


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      .-....+++|+++++++-..-.-.+++.+.+..
T Consensus       223 ~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~  255 (409)
T PRK11790        223 AEELALMKPGAILINASRGTVVDIDALADALKS  255 (409)
T ss_pred             HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHc
Confidence            322346899999999986544444555555543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.79  E-value=3.3e-08  Score=83.38  Aligned_cols=113  Identities=19%  Similarity=0.263  Sum_probs=81.2

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee--------------cChhhHhhcCCCEEEEecCch
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF--------------ADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~--------------~~~~~~~~~~aDvVIlavp~~   99 (335)
                      |+|+|+|.||..+|..|.+.|++|.+++|++ ..+...+.|+...              .+..+.. ..+|+||+||+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~viv~vKa~   78 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADA-GPYDLVIVAVKAY   78 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHH-STESEEEE-SSGG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhcc-CCCcEEEEEeccc
Confidence            7899999999999999999999999999998 6555555555321              1111223 6899999999999


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFG  151 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG  151 (335)
                      +..++++.+. +.+.+++.|+-+-+.- ...+.+.+.++.. +++.+-..+|
T Consensus        79 ~~~~~l~~l~-~~~~~~t~iv~~qNG~-g~~~~l~~~~~~~-~v~~g~~~~g  127 (151)
T PF02558_consen   79 QLEQALQSLK-PYLDPNTTIVSLQNGM-GNEEVLAEYFPRP-RVLGGVTTIG  127 (151)
T ss_dssp             GHHHHHHHHC-TGEETTEEEEEESSSS-SHHHHHHCHSTGS-GEEEEEEEEE
T ss_pred             chHHHHHHHh-hccCCCcEEEEEeCCC-CcHHHHHHHcCCC-cEEEEEEeEe
Confidence            9999999995 7888886666554332 3447777777643 4444444444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PLN02928 oxidoreductase family protein

Probab=98.78  E-value=2.6e-08  Score=95.78  Aligned_cols=110  Identities=19%  Similarity=0.250  Sum_probs=78.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH------------hCCCceecChhhHhhcCCCEEEEe
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ------------QLNAPFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~------------~~g~~~~~~~~~~~~~~aDvVIla   95 (335)
                      ...+++|||||+|.||..+|+.++..|++|++|||+........            ..+. ...++++++ .+||+|+++
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell-~~aDiVvl~  233 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFA-GEADIVVLC  233 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHH-hhCCEEEEC
Confidence            45689999999999999999999999999999999743211110            0011 345788888 899999999


Q ss_pred             cCchh-HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593           96 TSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus        96 vp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      +|... +..++..-....+++|+++++++-..-.-.+++.+.+..
T Consensus       234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~  278 (347)
T PLN02928        234 CTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES  278 (347)
T ss_pred             CCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence            99654 445553221246889999999986554444556555544

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=98.76  E-value=2.9e-08  Score=94.06  Aligned_cols=107  Identities=17%  Similarity=0.215  Sum_probs=79.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.++..|++|.+||+.....    ..++. ..++++++ ++||+|++++|... +..++.
T Consensus       142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell-~~sDvv~lh~Plt~~T~~li~  215 (311)
T PRK08410        142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELL-KTSDIISIHAPLNEKTKNLIA  215 (311)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHh-hcCCEEEEeCCCCchhhcccC
Confidence            4578999999999999999999999999999999964321    22332 34788888 89999999999764 555554


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD  140 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~  140 (335)
                      .-....+|+++++++++-....-.+++.+.+..+
T Consensus       216 ~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g  249 (311)
T PRK08410        216 YKELKLLKDGAILINVGRGGIVNEKDLAKALDEK  249 (311)
T ss_pred             HHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence            3223468899999999765444445565555443

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.75  E-value=2.6e-08  Score=96.31  Aligned_cols=104  Identities=15%  Similarity=0.235  Sum_probs=75.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-----HHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-----TQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-----~~~  103 (335)
                      ..+++|||||+|.||+.+|+.+...|++|.+||+.....    ... ....++++++ .+||+|++++|...     +..
T Consensus       114 L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell-~~sDiI~lh~PLt~~g~~~T~~  187 (378)
T PRK15438        114 LHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELV-QEADILTFHTPLFKDGPYKTLH  187 (378)
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHH-hhCCEEEEeCCCCCCccccccc
Confidence            468899999999999999999999999999999753211    111 1245788888 79999999999654     444


Q ss_pred             HHhhccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                      ++.+-....+++|+++++++-....-.+++.+.+.
T Consensus       188 li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~  222 (378)
T PRK15438        188 LADEKLIRSLKPGAILINACRGAVVDNTALLTCLN  222 (378)
T ss_pred             ccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence            44321124588999999997654444455555553

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=98.75  E-value=4.3e-08  Score=93.35  Aligned_cols=110  Identities=21%  Similarity=0.380  Sum_probs=80.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHH-HcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFA-RHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL  105 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~-~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl  105 (335)
                      ...++++||||+|.||..+|+.++ ..|++|.+||+...... ....++.. .++++++ ++||+|++++|... +..++
T Consensus       142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~~~~~-~~l~ell-~~sDvv~lh~plt~~T~~li  218 (323)
T PRK15409        142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERFNARY-CDLDTLL-QESDFVCIILPLTDETHHLF  218 (323)
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhcCcEe-cCHHHHH-HhCCEEEEeCCCChHHhhcc
Confidence            457899999999999999999997 78899999998753221 23445543 4788888 89999999999764 55555


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD  140 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~  140 (335)
                      ..-....+++++++++++-....-.+++.+.+..+
T Consensus       219 ~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g  253 (323)
T PRK15409        219 GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG  253 (323)
T ss_pred             CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence            43222468899999999765444445665555443

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.74  E-value=8.7e-09  Score=91.08  Aligned_cols=155  Identities=13%  Similarity=0.126  Sum_probs=104.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-----------C-C-----------------ceecC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-----------N-A-----------------PFFAD   80 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-----------g-~-----------------~~~~~   80 (335)
                      ..+.|+|||.|.||+.||+-.+..|++|+++|++++.+..+.+-           + .                 ...++
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn   89 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN   89 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence            45789999999999999999999999999999998766544321           1 0                 12345


Q ss_pred             hhhHhhcCCCEEEEecCch--hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccc
Q 044593           81 LNDLCELHPDVVLLSTSIL--STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSS  158 (335)
Q Consensus        81 ~~~~~~~~aDvVIlavp~~--~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~  158 (335)
                      ..+++ .++|+||-++-..  .-..+++++. ...++.++++..+|.  ..+..+...+....+|.|.|-+.....=   
T Consensus        90 v~~~v-~dadliiEAivEn~diK~~lF~~l~-~~ak~~~il~tNTSS--l~lt~ia~~~~~~srf~GlHFfNPvPvM---  162 (298)
T KOG2304|consen   90 VSDAV-SDADLIIEAIVENLDIKRKLFKDLD-KIAKSSTILATNTSS--LSLTDIASATQRPSRFAGLHFFNPVPVM---  162 (298)
T ss_pred             HHHhh-hhhHHHHHHHHHhHHHHHHHHHHHH-hhcccceEEeecccc--eeHHHHHhhccChhhhceeeccCCchhH---
Confidence            56666 7899998776443  3467788884 456788887765443  2234455455555689999954433321   


Q ss_pred             cCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEe
Q 044593          159 WENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEM  198 (335)
Q Consensus       159 ~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~  198 (335)
                       +    +++  ++.++.++++.++.+.++-+.+|..++..
T Consensus       163 -K----LvE--Vir~~~TS~eTf~~l~~f~k~~gKttVac  195 (298)
T KOG2304|consen  163 -K----LVE--VIRTDDTSDETFNALVDFGKAVGKTTVAC  195 (298)
T ss_pred             -H----Hhh--hhcCCCCCHHHHHHHHHHHHHhCCCceee
Confidence             1    111  12345566778888999999999766655

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.73  E-value=2.9e-07  Score=89.93  Aligned_cols=163  Identities=14%  Similarity=0.111  Sum_probs=107.2

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEE------EEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLL------VHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~------~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ...++++|+|||+|.+|.+.|..|+..|++|+      ++|.+.+..+.|.+.|+.. .+..+++ +.||+|++.+|...
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~-~~ADvVviLlPDt~  109 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELI-PQADLVINLTPDKQ  109 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHH-HhCCEEEEcCChHH
Confidence            44578999999999999999999999999988      4444455666677778865 4677777 89999999999998


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccC-CCCCccccc---CCCcceecccccC-CCh
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMF-GPESAKSSW---ENLPFMYDKVRIG-NDE  175 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPma-G~~~~~~~~---~g~~~i~~~~~~~-~~~  175 (335)
                      -..+.+++. +.+++|..+.=.-+-.  + ..-.-..|.++.++-.-|=. |++.- +.|   .|.|.++.  +.. .|.
T Consensus       110 q~~v~~~i~-p~LK~Ga~L~fsHGFn--i-~~~~i~~~~dvdVimvAPKgpG~~vR-~~y~~G~Gvp~l~A--V~~~qD~  182 (487)
T PRK05225        110 HSDVVRAVQ-PLMKQGAALGYSHGFN--I-VEVGEQIRKDITVVMVAPKCPGTEVR-EEYKRGFGVPTLIA--VHPENDP  182 (487)
T ss_pred             HHHHHHHHH-hhCCCCCEEEecCCce--e-eeCceeCCCCCcEEEECCCCCCchHH-HHHhcCCCceEEEE--EeecCCC
Confidence            677777784 7899998776432221  1 11111235667766555533 22221 111   46676653  111 222


Q ss_pred             hHHHHHHHHHHHHHhcCCE---EEEeC
Q 044593          176 ERIKRVDKFLDVFAKEGCR---MVEMS  199 (335)
Q Consensus       176 ~~~~~~~~v~~l~~~~G~~---v~~~~  199 (335)
                       +..+.+....+...+|+.   ++..+
T Consensus       183 -~g~a~~~ala~a~~iG~~ragv~~tt  208 (487)
T PRK05225        183 -KGEGMAIAKAWAAATGGHRAGVLESS  208 (487)
T ss_pred             -CchHHHHHHHHHHHhCCCccceeecc
Confidence             223556667777888876   55554

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.72  E-value=8e-08  Score=90.47  Aligned_cols=94  Identities=19%  Similarity=0.287  Sum_probs=73.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee--cChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF--ADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ...|++|||+|.+|..++..|+..|.+|+++||+++..+.+.+.|....  .++.+.+ .++|+||.|+|...+.   ++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l-~~aDiVI~t~p~~~i~---~~  226 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEV-GKIDIIFNTIPALVLT---KE  226 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHh-CCCCEEEECCChhhhh---HH
Confidence            5789999999999999999999999999999999877776777787543  3455666 7899999999975432   12


Q ss_pred             ccccccCCccEEEEcCCCCch
Q 044593          108 IPFQRLKRSTLFVDVLSVKEF  128 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~  128 (335)
                      . ...++++.+|+|+++....
T Consensus       227 ~-l~~~~~g~vIIDla~~pgg  246 (296)
T PRK08306        227 V-LSKMPPEALIIDLASKPGG  246 (296)
T ss_pred             H-HHcCCCCcEEEEEccCCCC
Confidence            2 1346789999999876544

>PRK06487 glycerate dehydrogenase; Provisional

Probab=98.67  E-value=6.8e-08  Score=91.78  Aligned_cols=104  Identities=13%  Similarity=0.186  Sum_probs=77.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.++..|++|.+||+.....      .. ...++++++ ++||+|++++|... +..++.
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~------~~-~~~~l~ell-~~sDiv~l~lPlt~~T~~li~  216 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA------RP-DRLPLDELL-PQVDALTLHCPLTEHTRHLIG  216 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc------cc-cccCHHHHH-HhCCEEEECCCCChHHhcCcC
Confidence            4578899999999999999999999999999999864321      11 124688888 89999999999754 555554


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      .-....+|+++++++++-....-.+++.+.+..
T Consensus       217 ~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~  249 (317)
T PRK06487        217 ARELALMKPGALLINTARGGLVDEQALADALRS  249 (317)
T ss_pred             HHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence            322346889999999986544444555555543

>PRK06932 glycerate dehydrogenase; Provisional

Probab=98.65  E-value=6.7e-08  Score=91.70  Aligned_cols=105  Identities=13%  Similarity=0.195  Sum_probs=77.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.++..|++|.+||+.....     ... ...++++++ .+||+|++++|... +..++.
T Consensus       144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~-----~~~-~~~~l~ell-~~sDiv~l~~Plt~~T~~li~  216 (314)
T PRK06932        144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV-----CRE-GYTPFEEVL-KQADIVTLHCPLTETTQNLIN  216 (314)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc-----ccc-ccCCHHHHH-HhCCEEEEcCCCChHHhcccC
Confidence            4578999999999999999999999999999999864211     011 134788888 89999999999654 555554


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      .-....+|+|+++++++-..-.-.+++.+.+..
T Consensus       217 ~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~  249 (314)
T PRK06932        217 AETLALMKPTAFLINTGRGPLVDEQALLDALEN  249 (314)
T ss_pred             HHHHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence            322346889999999986554444566555543

>PLN02306 hydroxypyruvate reductase

Probab=98.65  E-value=4.2e-07  Score=88.49  Aligned_cols=111  Identities=13%  Similarity=0.150  Sum_probs=78.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHH-HcCCeEEEEcCCCCcH-HH-HHhCC------------CceecChhhHhhcCCCEE
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFA-RHHHTLLVHSRSDHSP-AV-RQQLN------------APFFADLNDLCELHPDVV   92 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~-~~G~~V~~~dr~~~~~-~~-a~~~g------------~~~~~~~~~~~~~~aDvV   92 (335)
                      ...+++|||||+|.||..+|+.+. ..|++|.+||+..... .. ....|            +....++++++ .+||+|
T Consensus       162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell-~~sDiV  240 (386)
T PLN02306        162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVL-READVI  240 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHH-hhCCEE
Confidence            356899999999999999999985 7799999999886422 10 11111            12235788888 899999


Q ss_pred             EEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593           93 LLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus        93 Ilavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      ++++|... +..++..-....+++|+++++++-....-.+++.+.+..
T Consensus       241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s  288 (386)
T PLN02306        241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA  288 (386)
T ss_pred             EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence            99999653 555554322356899999999975544444555555543

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.65  E-value=1.2e-07  Score=88.00  Aligned_cols=120  Identities=15%  Similarity=0.194  Sum_probs=78.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc--CCe-EEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH--HHT-LLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~--G~~-V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      +|||+|||+|.||..++..+.+.  +++ +.++|++++..+ .+...+...+++.++++ .++|+|++|+|+....++..
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell-~~~DvVvi~a~~~~~~~~~~   79 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELV-EDVDLVVECASVNAVEEVVP   79 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHh-cCCCEEEEcCChHHHHHHHH
Confidence            37999999999999999999876  355 467899986544 34455666677888887 78999999999988877776


Q ss_pred             hccccccCCccEEEEcCCCC-chHHHHHHhhCC-CCC-ceEeccccCCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVK-EFPRNLFLKYLP-QDF-DILCTHPMFGPE  153 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK-~~~~~~l~~~l~-~~~-~~v~~HPmaG~~  153 (335)
                      .+. . ..++.++++++... ....+.+.+... .+. -+++.+++.|..
T Consensus        80 ~al-~-~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d  127 (265)
T PRK13304         80 KSL-E-NGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLD  127 (265)
T ss_pred             HHH-H-cCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHH
Confidence            652 1 22333343332221 122333333222 222 366666666554

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.65  E-value=1.4e-07  Score=87.74  Aligned_cols=79  Identities=24%  Similarity=0.398  Sum_probs=63.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc--CCeEE-EEcCCCCcH-HHHHhCCC-ceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH--HHTLL-VHSRSDHSP-AVRQQLNA-PFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~--G~~V~-~~dr~~~~~-~~a~~~g~-~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      |+.+||||||+|.||..++..|.+.  ++++. ++|++++.. +.+.+.|. ..+++.++++ .++|+|++|+|.....+
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell-~~~D~Vvi~tp~~~h~e   82 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLA-THADIVVEAAPASVLRA   82 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHh-cCCCEEEECCCcHHHHH
Confidence            5678999999999999999999873  67775 789988654 34555564 4567888887 78999999999998777


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      +....
T Consensus        83 ~~~~a   87 (271)
T PRK13302         83 IVEPV   87 (271)
T ss_pred             HHHHH
Confidence            76654

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=98.63  E-value=1.8e-07  Score=88.45  Aligned_cols=110  Identities=18%  Similarity=0.368  Sum_probs=83.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~  107 (335)
                      ..+++|+|+|+|.||..+|+.|...|..+..+.|++...+.+.+.+.. ..+.++.+ .++|+|++|+|... +..++..
T Consensus       160 ~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~-~~sD~ivv~~pLt~~T~~liNk  237 (336)
T KOG0069|consen  160 LEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELL-ANSDVIVVNCPLTKETRHLINK  237 (336)
T ss_pred             ccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHH-hhCCEEEEecCCCHHHHHHhhH
Confidence            357899999999999999999999997777778877766656655554 45667777 89999999999875 5666653


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD  140 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~  140 (335)
                      -....++++.+|++++-.+-.-.+.+.+.+..+
T Consensus       238 ~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG  270 (336)
T KOG0069|consen  238 KFIEKMKDGAVLVNTARGAIIDEEALVEALKSG  270 (336)
T ss_pred             HHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence            223568999999999766545556666666543

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.53  E-value=4.1e-07  Score=85.38  Aligned_cols=169  Identities=14%  Similarity=0.137  Sum_probs=112.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH--Hh---CCCceecChhhHhh--cCCCEEEEecCchh-HH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR--QQ---LNAPFFADLNDLCE--LHPDVVLLSTSILS-TQ  102 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a--~~---~g~~~~~~~~~~~~--~~aDvVIlavp~~~-~~  102 (335)
                      .+.|+.||++.||..++.....+|+.|.+|+|.....+..  .+   ..+....++++++.  +...+|++-++... +.
T Consensus         6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD   85 (487)
T KOG2653|consen    6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD   85 (487)
T ss_pred             ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence            4689999999999999999999999999999998655322  22   23445677777752  57889998887765 66


Q ss_pred             HHHhhccccccCCccEEEEcCCCC-chHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHH
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLSVK-EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRV  181 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~SvK-~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~  181 (335)
                      .+++++. +++.+|.+|+|-++.. ....+..++....+.-||++ -+.|.|.++   +--|-++.    +++   .++.
T Consensus        86 ~~I~~L~-p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~-GVSGGEEGA---R~GPSlMp----Gg~---~~Aw  153 (487)
T KOG2653|consen   86 QFIEELV-PYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGS-GVSGGEEGA---RYGPSLMP----GGS---KEAW  153 (487)
T ss_pred             HHHHHHH-hhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEec-CccCccccc---ccCCccCC----CCC---hHHH
Confidence            7888885 7899999999986543 23444455444567778886 466666442   22243431    232   4566


Q ss_pred             HHHHHHHHhcCCE-------EEEeChHHHHHHHHHhh
Q 044593          182 DKFLDVFAKEGCR-------MVEMSCFDHDKYAAGSQ  211 (335)
Q Consensus       182 ~~v~~l~~~~G~~-------v~~~~~~eHD~~~A~~s  211 (335)
                      ..++++|..+-++       +.++.+.--...+.+++
T Consensus       154 p~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVH  190 (487)
T KOG2653|consen  154 PHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVH  190 (487)
T ss_pred             HHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhc
Confidence            6777777655322       34555544344454443

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.48  E-value=7.7e-07  Score=75.82  Aligned_cols=93  Identities=13%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH--HHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST--QSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~--~~vl~  106 (335)
                      ..++++.|+|+|.+|..+|+.|+..|.+|+++|++|-..-.|...|+... +.++++ ..+|++|.+|....+  .+-+.
T Consensus        21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~-~~adi~vtaTG~~~vi~~e~~~   98 (162)
T PF00670_consen   21 LAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEAL-RDADIFVTATGNKDVITGEHFR   98 (162)
T ss_dssp             -TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHT-TT-SEEEE-SSSSSSB-HHHHH
T ss_pred             eCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHH-hhCCEEEECCCCccccCHHHHH
Confidence            35789999999999999999999999999999999965545777788764 577777 899999999987653  45554


Q ss_pred             hccccccCCccEEEEcCCCCch
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEF  128 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~  128 (335)
                      +     ++++++|.++++....
T Consensus        99 ~-----mkdgail~n~Gh~d~E  115 (162)
T PF00670_consen   99 Q-----MKDGAILANAGHFDVE  115 (162)
T ss_dssp             H-----S-TTEEEEESSSSTTS
T ss_pred             H-----hcCCeEEeccCcCcee
Confidence            4     5689999999876543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.45  E-value=1.3e-06  Score=77.52  Aligned_cols=91  Identities=15%  Similarity=0.193  Sum_probs=65.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-HhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-QQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL  105 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl  105 (335)
                      ..++++|+|+|+|.||..+|+.|.+.|++|+++|++++..+.. ...|....+. .++...+||+++-|..... ..+.+
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~  103 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTI  103 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHH
Confidence            3467899999999999999999999999999999998765433 3336554433 4443247999997766553 35555


Q ss_pred             hhccccccCCccEEEEcCCC
Q 044593          106 KSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      +++.      ..+|++-++.
T Consensus       104 ~~l~------~~~v~~~AN~  117 (200)
T cd01075         104 PQLK------AKAIAGAANN  117 (200)
T ss_pred             HHcC------CCEEEECCcC
Confidence            5552      3477777654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=98.40  E-value=1.9e-05  Score=73.63  Aligned_cols=162  Identities=12%  Similarity=0.093  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce--------------ecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           41 NFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF--------------FADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        41 ~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~--------------~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      .||+.+|..|.++|++|++++|+ +..+..++.|+..              .+++++ . ..+|+||+|||..++.++++
T Consensus         1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~-~~~D~iiv~vKs~~~~~~l~   77 (293)
T TIGR00745         1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-L-PPADLVIITVKAYQTEEAAA   77 (293)
T ss_pred             CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-c-CCCCEEEEeccchhHHHHHH
Confidence            37999999999999999999997 4444455555421              112333 3 57999999999999999999


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCC-ccccc--CCC-cceecccccCCChhHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPES-AKSSW--ENL-PFMYDKVRIGNDEERIKRVD  182 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~-~~~~~--~g~-~~i~~~~~~~~~~~~~~~~~  182 (335)
                      .+. +.+.++++|+.+...-. ..+.+.+.++.. +++.+.+..|... ++...  .+. .+.     ++..+...+..+
T Consensus        78 ~l~-~~l~~~~~iv~~qNG~g-~~~~l~~~~~~~-~v~~g~~~~~~~~~~pg~v~~~~~~~~~-----iG~~~~~~~~~~  149 (293)
T TIGR00745        78 LLL-PLIGKNTKVLFLQNGLG-HEERLRELLPAR-RILGGVVTHGAVREEPGVVHHAGLGATK-----IGDYVGENEAVE  149 (293)
T ss_pred             HhH-hhcCCCCEEEEccCCCC-CHHHHHHHhCcc-CEEEEEEEEeeEEcCCcEEEEeccccEE-----EecCCCchHHHH
Confidence            995 67888888877643322 235566666543 3444433333322 11000  111 111     222111124567


Q ss_pred             HHHHHHHhcCCEEEEeChHHHHHHHHHhhhh
Q 044593          183 KFLDVFAKEGCRMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       183 ~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~l  213 (335)
                      .+.++|+..|.++...+.-....+..++...
T Consensus       150 ~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~  180 (293)
T TIGR00745       150 ALAELLNEAGIPAELHGDILAAIWKKLLVNA  180 (293)
T ss_pred             HHHHHHHhCCCCCEecchHHHHHHHHHhhee
Confidence            7888999989887666655555555554333

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.38  E-value=1.2e-06  Score=86.76  Aligned_cols=92  Identities=14%  Similarity=0.217  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-h
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK-S  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~-~  107 (335)
                      ..+++|+|||+|.||..+|..++..|++|+++++++.....+...|+.. .++++++ +.+|+||+|+...   .++. +
T Consensus       252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell-~~ADIVI~atGt~---~iI~~e  326 (476)
T PTZ00075        252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVV-ETADIFVTATGNK---DIITLE  326 (476)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHH-hcCCEEEECCCcc---cccCHH
Confidence            4688999999999999999999999999999999886654455567643 3567777 8999999997533   3332 2


Q ss_pred             ccccccCCccEEEEcCCCC
Q 044593          108 IPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK  126 (335)
                      . ...++++.+|++++...
T Consensus       327 ~-~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        327 H-MRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             H-HhccCCCcEEEEcCCCc
Confidence            2 23578999999998764

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.37  E-value=1.5e-06  Score=82.48  Aligned_cols=94  Identities=22%  Similarity=0.315  Sum_probs=69.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCc-HHHHHhCCCcee--cChhhHhhcCCCEEEEecCchhHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHS-PAVRQQLNAPFF--ADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~-~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      ...++|+|||+|.||..++..|...| .+|++++|+++. .+.+.+.|....  .+..+.+ .++|+||.|||......+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l-~~aDvVi~at~~~~~~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELL-NEADVVISATGAPHYAKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHH-hcCCEEEECCCCCchHHH
Confidence            35789999999999999999999866 589999999865 466777776432  2344555 789999999998876444


Q ss_pred             HhhccccccCCccEEEEcC
Q 044593          105 LKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~  123 (335)
                      +.........++.+|+|++
T Consensus       255 ~~~~~~~~~~~~~~viDla  273 (311)
T cd05213         255 VERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             HHHHHhhCCCCCeEEEEeC
Confidence            4443111123567999987

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.35  E-value=1.7e-06  Score=69.79  Aligned_cols=77  Identities=21%  Similarity=0.390  Sum_probs=62.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHc--CCeE-EEEcCCCCcHH-HHHhCCCceecChhhHhh-cCCCEEEEecCchhHHHHHh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARH--HHTL-LVHSRSDHSPA-VRQQLNAPFFADLNDLCE-LHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~--G~~V-~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~vl~  106 (335)
                      +||+|||+|.+|......+.+.  +.++ .++|++++..+ .+++.|+..+++.++++. .+.|+|++|||...-.+++.
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~   80 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK   80 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence            5899999999999999999887  3465 47899986554 467789988899998872 37999999999998777776


Q ss_pred             hc
Q 044593          107 SI  108 (335)
Q Consensus       107 ~l  108 (335)
                      ..
T Consensus        81 ~~   82 (120)
T PF01408_consen   81 KA   82 (120)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.34  E-value=1.6e-06  Score=70.58  Aligned_cols=92  Identities=20%  Similarity=0.288  Sum_probs=61.5

Q ss_pred             eEEEEc-ccHHHHHHHHHHHHc-CCeEEEE-cCCCCcHHHHHhCC--Cc---e-ecChhhHhhcCCCEEEEecCchhHHH
Q 044593           33 KIAVIG-FGNFGQFLAKAFARH-HHTLLVH-SRSDHSPAVRQQLN--AP---F-FADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        33 kI~IIG-~G~mG~siA~~L~~~-G~~V~~~-dr~~~~~~~a~~~g--~~---~-~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ||+||| .|.+|..++..+.+. ++++..+ +++.+..+.+...+  +.   . ..+...+...++|+||+|+|.+...+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            689999 599999999999984 7777655 65532222222211  11   0 11111111147999999999999888


Q ss_pred             HHhhccccccCCccEEEEcCCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ++..+. ..+++|++|+|++|+
T Consensus        81 ~~~~~~-~~~~~g~~viD~s~~  101 (122)
T smart00859       81 IAPLLP-KAAEAGVKVIDLSSA  101 (122)
T ss_pred             HHHHHH-hhhcCCCEEEECCcc
Confidence            776553 456899999999986

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.33  E-value=6.6e-07  Score=74.46  Aligned_cols=95  Identities=20%  Similarity=0.279  Sum_probs=64.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCCCcH-HHHHhCC---Cc--eecChhhHhhcCCCEEEEecCchh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSDHSP-AVRQQLN---AP--FFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~~~~-~~a~~~g---~~--~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ..+..++.|||+|.+|.+++.+|.+.|.+ |++++|+.+.. +.+...+   +.  ...+..+.. .++|+||.|||...
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~-~~~DivI~aT~~~~   87 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEAL-QEADIVINATPSGM   87 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHH-HTESEEEE-SSTTS
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHH-hhCCeEEEecCCCC
Confidence            45788999999999999999999999985 99999997654 4444442   21  234455555 78999999999875


Q ss_pred             H---HHHHhhccccccCCccEEEEcCCCCch
Q 044593          101 T---QSVLKSIPFQRLKRSTLFVDVLSVKEF  128 (335)
Q Consensus       101 ~---~~vl~~l~~~~l~~~~iVvd~~SvK~~  128 (335)
                      .   .+.+.... .   .-++|+|++ +...
T Consensus        88 ~~i~~~~~~~~~-~---~~~~v~Dla-~Pr~  113 (135)
T PF01488_consen   88 PIITEEMLKKAS-K---KLRLVIDLA-VPRD  113 (135)
T ss_dssp             TSSTHHHHTTTC-H---HCSEEEES--SS-S
T ss_pred             cccCHHHHHHHH-h---hhhceeccc-cCCC
Confidence            3   23333221 0   014999996 5433

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.33  E-value=1.7e-06  Score=81.04  Aligned_cols=75  Identities=23%  Similarity=0.317  Sum_probs=61.1

Q ss_pred             CCCCeEEEEccc-HHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFG-NFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G-~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|+|||.| .||..+|..|.++|+.|++|++...              ++.+++ ++||+||+|++...   .+..
T Consensus       157 l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~-~~ADIVIsavg~~~---~v~~  218 (301)
T PRK14194        157 LTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALC-RQADIVVAAVGRPR---LIDA  218 (301)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHH-hcCCEEEEecCChh---cccH
Confidence            457999999995 9999999999999999999987643              456666 78999999998764   2222


Q ss_pred             ccccccCCccEEEEcCC
Q 044593          108 IPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~S  124 (335)
                         ..+++|++|+|++-
T Consensus       219 ---~~ik~GaiVIDvgi  232 (301)
T PRK14194        219 ---DWLKPGAVVIDVGI  232 (301)
T ss_pred             ---hhccCCcEEEEecc
Confidence               23789999999974

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.31  E-value=4.6e-06  Score=78.91  Aligned_cols=89  Identities=20%  Similarity=0.251  Sum_probs=61.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhC-----------CCceecChhhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQL-----------NAPFFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~-----------g~~~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      |||+|||+|.||..+|..++..|+ +|+++|++++..+ .+.+.           .+..+.+.++ + ++||+||+|++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~-~~aDiVIitag~   79 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-T-ANSDIVVITAGL   79 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-h-CCCCEEEEcCCC
Confidence            699999999999999999999887 8999999766432 12110           1123456666 4 799999999873


Q ss_pred             h----------------hHHHHHhhccccccCCccEEEEcCC
Q 044593           99 L----------------STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~----------------~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .                .+.++.+++. +. .++.+|+.+++
T Consensus        80 p~~~~~sR~~l~~~N~~iv~~i~~~I~-~~-~p~~~iIv~tN  119 (305)
T TIGR01763        80 PRKPGMSREDLLSMNAGIVREVTGRIM-EH-SPNPIIVVVSN  119 (305)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHH-HH-CCCeEEEEecC
Confidence            1                1344555553 33 45666666654

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.29  E-value=5.2e-06  Score=81.55  Aligned_cols=93  Identities=11%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-h
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK-S  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~-~  107 (335)
                      ..+++|+|+|+|.||..+|..++..|.+|+++|+++.....+...|... .+.++++ +.+|+||.|+....   ++. +
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal-~~aDVVI~aTG~~~---vI~~~  284 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAA-ELGDIFVTATGNKD---VITAE  284 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHH-hCCCEEEECCCCHH---HHHHH
Confidence            3678999999999999999999999999999999987665566667653 3567777 79999999986543   332 2


Q ss_pred             ccccccCCccEEEEcCCCCc
Q 044593          108 IPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~  127 (335)
                      . ...+++|+++++++....
T Consensus       285 ~-~~~mK~GailiNvG~~d~  303 (425)
T PRK05476        285 H-MEAMKDGAILANIGHFDN  303 (425)
T ss_pred             H-HhcCCCCCEEEEcCCCCC
Confidence            2 134789999999987653

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.28  E-value=6.1e-06  Score=77.99  Aligned_cols=90  Identities=21%  Similarity=0.246  Sum_probs=59.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHH-HHh---C----CC--c--eecChhhHhhcCCCEEEEecC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAV-RQQ---L----NA--P--FFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~-a~~---~----g~--~--~~~~~~~~~~~~aDvVIlavp   97 (335)
                      ++||+|||+|.||..+|..+...|+ +|+++|++++..+. +.+   .    +.  .  .+++.++ + ++||+||+++.
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~-~~aDiVii~~~   79 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-I-AGSDVVVITAG   79 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-H-CCCCEEEECCC
Confidence            4799999999999999999998876 99999998865421 111   1    11  1  2345544 4 79999999863


Q ss_pred             --c--------------hhHHHHHhhccccccCCccEEEEcCC
Q 044593           98 --I--------------LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 --~--------------~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                        .              ..+.++++++. +.. ++.+++.+++
T Consensus        80 ~p~~~~~~r~~~~~~n~~i~~~i~~~i~-~~~-~~~~viv~tN  120 (307)
T PRK06223         80 VPRKPGMSRDDLLGINAKIMKDVAEGIK-KYA-PDAIVIVVTN  120 (307)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHH-HHC-CCeEEEEecC
Confidence              2              22455666663 333 5555665543

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=98.28  E-value=8.5e-05  Score=67.85  Aligned_cols=128  Identities=13%  Similarity=0.135  Sum_probs=93.7

Q ss_pred             CCceecChhhHhhcCCCEEEEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCC
Q 044593           74 NAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFG  151 (335)
Q Consensus        74 g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG  151 (335)
                      |+..++|..+++ +++|++|+-+|... ...+++.+. +++++|++|+++|++.+.....+-+.++ +++.+.+.||-+-
T Consensus       128 GvkVtsDD~EAv-k~aei~I~ftPfG~~t~~Iikki~-~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaV  205 (342)
T PRK00961        128 GLKVTTDDREAV-ADADIVITWLPKGGMQPDIIEKFA-DDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGAV  205 (342)
T ss_pred             CceEecCcHHHh-cCCCEEEEecCCCCCchHHHHHHH-hhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence            555666767777 89999999999987 588899885 7899999999999987766655544454 5678999999887


Q ss_pred             CCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhH
Q 044593          152 PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVT  214 (335)
Q Consensus       152 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lp  214 (335)
                      |+..     |+.++-      ..-.++++++++.++.++.|..++.+.++--.-+.-+.|.++
T Consensus       206 Pgt~-----Gq~~i~------egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~VT  257 (342)
T PRK00961        206 PEMK-----GQVYIA------EGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVT  257 (342)
T ss_pred             CCCC-----Cceecc------cccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHH
Confidence            7752     443332      222456789999999999999999999753333333333333

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.27  E-value=5.7e-06  Score=80.84  Aligned_cols=92  Identities=12%  Similarity=0.165  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS-  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~-  107 (335)
                      ..+++|+|+|+|.+|..+|..++..|.+|+++|+++.....+...|.... +.++++ ..+|+||.++....   ++.. 
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal-~~aDVVItaTG~~~---vI~~~  267 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAA-KIGDIFITATGNKD---VIRGE  267 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHH-hcCCEEEECCCCHH---HHHHH
Confidence            46789999999999999999999999999999999876555666776443 456666 78999999987543   3322 


Q ss_pred             ccccccCCccEEEEcCCCC
Q 044593          108 IPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK  126 (335)
                      . ...+++|+++++++...
T Consensus       268 ~-~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       268 H-FENMKDGAIVANIGHFD  285 (406)
T ss_pred             H-HhcCCCCcEEEEECCCC
Confidence            2 13578999999988654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=98.27  E-value=9.1e-05  Score=67.77  Aligned_cols=116  Identities=11%  Similarity=0.153  Sum_probs=90.0

Q ss_pred             CCceecChhhHhhcCCCEEEEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCC
Q 044593           74 NAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFG  151 (335)
Q Consensus        74 g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG  151 (335)
                      |+..++|..+++ +++|++|+-+|... ...+++.+. +++++|++|+++|++.+.....+-+.++ +++.+.+.||-+-
T Consensus       126 GvkVtsDD~EAv-~~aei~I~ftPfG~~q~~Iikkii-~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaV  203 (340)
T TIGR01723       126 GLKVTTDDREAV-EDADIIITWLPKGNKQPDIIKKFI-DDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPGCV  203 (340)
T ss_pred             CceEecCcHHHh-cCCCEEEEEcCCCCCchHHHHHHH-hhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCCCC
Confidence            555667777777 89999999999987 588898885 7899999999999997766655544454 5678999999887


Q ss_pred             CCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHH
Q 044593          152 PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFD  202 (335)
Q Consensus       152 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~e  202 (335)
                      |+.     .++.++..      .-.++++++++.++.++.|..++.+.++-
T Consensus       204 Pgt-----~~q~Yi~e------gyAtEEqI~klveL~~sa~k~ay~~PA~L  243 (340)
T TIGR01723       204 PEM-----KGQVYIAE------GYASEEAVNKLYELGKKARGKAFKMPANL  243 (340)
T ss_pred             CCC-----CCceEeec------ccCCHHHHHHHHHHHHHhCCCeeecchhh
Confidence            774     24444432      22346789999999999999999998763

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.27  E-value=3.5e-06  Score=77.88  Aligned_cols=161  Identities=17%  Similarity=0.225  Sum_probs=104.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-cHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-SPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK-  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~-  106 (335)
                      .+.+||+|||+|.-|.+-|..|+.+|.+|++--|... +.+.|.+.|..+. +.++++ +.+|+|++-+|+....++++ 
T Consensus        16 LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~-k~ADvim~L~PDe~q~~vy~~   93 (338)
T COG0059          16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAA-KRADVVMILLPDEQQKEVYEK   93 (338)
T ss_pred             hcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHh-hcCCEEEEeCchhhHHHHHHH
Confidence            4678999999999999999999999999876655544 4788999998865 456777 89999999999999999998 


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCccccc---CCCcceecccccCCChhHHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSW---ENLPFMYDKVRIGNDEERIKRVDK  183 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~---~g~~~i~~~~~~~~~~~~~~~~~~  183 (335)
                      ++. |.+++|..+.=.-+.. .....+  ..|+++.++-.-|=...+.-.+.+   .|.|.++.   +-.|. +-.+.+.
T Consensus        94 ~I~-p~Lk~G~aL~FaHGfN-ihf~~i--~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiA---V~qD~-sG~a~~~  165 (338)
T COG0059          94 EIA-PNLKEGAALGFAHGFN-IHFGLI--VPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIA---VHQDA-SGKALDI  165 (338)
T ss_pred             Hhh-hhhcCCceEEeccccc-eeccee--cCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEE---EEeCC-CchHHHH
Confidence            775 7899998654322211 111111  124556555444432211100111   46776663   11221 1235566


Q ss_pred             HHHHHHhcC---CEEEEeC
Q 044593          184 FLDVFAKEG---CRMVEMS  199 (335)
Q Consensus       184 v~~l~~~~G---~~v~~~~  199 (335)
                      ...+.+.+|   +-++..+
T Consensus       166 Ala~AkgiGg~RaGvieTT  184 (338)
T COG0059         166 ALAYAKGIGGTRAGVIETT  184 (338)
T ss_pred             HHHHHHhcCCCccceEeee
Confidence            677788888   3366654

>PRK04148 hypothetical protein; Provisional

Probab=98.25  E-value=5e-06  Score=68.81  Aligned_cols=94  Identities=13%  Similarity=0.185  Sum_probs=72.8

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-----ecChhhHhhcCCCEEEEecCchhHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-----FADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-----~~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      ..+.+||.+||+| .|..+|..|.+.|++|+++|.++...+.+++.+...     ++..-++- +++|+|.-+-|+..+.
T Consensus        14 ~~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y-~~a~liysirpp~el~   91 (134)
T PRK04148         14 KGKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIY-KNAKLIYSIRPPRDLQ   91 (134)
T ss_pred             cccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHH-hcCCEEEEeCCCHHHH
Confidence            3356899999999 999999999999999999999999888788877743     22223444 7899999999988876


Q ss_pred             HHHhhccccccCCccEEEEcCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .-+-+++ ..++...+|...++
T Consensus        92 ~~~~~la-~~~~~~~~i~~l~~  112 (134)
T PRK04148         92 PFILELA-KKINVPLIIKPLSG  112 (134)
T ss_pred             HHHHHHH-HHcCCCEEEEcCCC
Confidence            6666664 44666667776665

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.22  E-value=6.4e-06  Score=80.70  Aligned_cols=90  Identities=11%  Similarity=0.210  Sum_probs=71.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-hc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK-SI  108 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~-~l  108 (335)
                      .+.+|+|+|+|.||..++..++..|.+|+++|+++.....+...|+... +.++.+ ..+|+||.|+....   ++. ..
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v-~~aDVVI~atG~~~---~i~~~~  275 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAV-KEGDIFVTTTGNKD---IITGEH  275 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHH-cCCCEEEECCCCHH---HHHHHH
Confidence            5789999999999999999999999999999999988888888898543 345666 78999999987543   222 21


Q ss_pred             cccccCCccEEEEcCCC
Q 044593          109 PFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~Sv  125 (335)
                       ...+++|.++++++..
T Consensus       276 -l~~mk~GgilvnvG~~  291 (413)
T cd00401         276 -FEQMKDGAIVCNIGHF  291 (413)
T ss_pred             -HhcCCCCcEEEEeCCC
Confidence             1347789999998754

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02494 adenosylhomocysteinase

Probab=98.22  E-value=7.7e-06  Score=80.85  Aligned_cols=90  Identities=12%  Similarity=0.182  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH--HHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST--QSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~--~~vl~  106 (335)
                      ..+++|+|+|+|.||..+|..++..|.+|+++++++.....+...|.... +.++++ ..+|+||.++....+  .+.+ 
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal-~~ADVVI~tTGt~~vI~~e~L-  328 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVV-SEADIFVTTTGNKDIIMVDHM-  328 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHH-hhCCEEEECCCCccchHHHHH-
Confidence            35789999999999999999999999999999999876555667777543 566776 789999998775532  2333 


Q ss_pred             hccccccCCccEEEEcCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~Sv  125 (335)
                          ..+++++++++++..
T Consensus       329 ----~~MK~GAiLiNvGr~  343 (477)
T PLN02494        329 ----RKMKNNAIVCNIGHF  343 (477)
T ss_pred             ----hcCCCCCEEEEcCCC
Confidence                347799999999863

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=98.21  E-value=1.1e-05  Score=76.93  Aligned_cols=66  Identities=20%  Similarity=0.256  Sum_probs=48.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHH----h---CCC----ceecChhhHhhcCCCEEEEe
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQ----Q---LNA----PFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~----~---~g~----~~~~~~~~~~~~~aDvVIla   95 (335)
                      .+.+||+|||+|.||..+|..+...|+ +|+++|++++..+ .+.    .   .+.    ..+++.++ + ++||+||++
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~-l-~~aDiVI~t   81 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYED-I-AGSDVVIVT   81 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHH-h-CCCCEEEEC
Confidence            356799999999999999999999995 8999999987431 111    1   111    12356554 4 799999997


Q ss_pred             c
Q 044593           96 T   96 (335)
Q Consensus        96 v   96 (335)
                      .
T Consensus        82 a   82 (321)
T PTZ00082         82 A   82 (321)
T ss_pred             C
Confidence            6

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=98.20  E-value=3.5e-06  Score=78.28  Aligned_cols=97  Identities=13%  Similarity=0.246  Sum_probs=64.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhC---CCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQL---NAPFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~---g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      ..++++|+|+|.+|.+++..|.+.|++|++++|+++..+ .+...   +.....+..+....++|+||.|||......+-
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~  195 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNID  195 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCC
Confidence            467899999999999999999999999999999976432 23222   22122223322214799999999986322111


Q ss_pred             h-hccccccCCccEEEEcCCCC
Q 044593          106 K-SIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       106 ~-~l~~~~l~~~~iVvd~~SvK  126 (335)
                      . .+....++++.+|+|+....
T Consensus       196 ~~~~~~~~l~~~~~v~D~~y~p  217 (270)
T TIGR00507       196 EPPVPAEKLKEGMVVYDMVYNP  217 (270)
T ss_pred             CCCCCHHHcCCCCEEEEeccCC
Confidence            0 11113467889999997543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.19  E-value=1.3e-05  Score=76.39  Aligned_cols=114  Identities=15%  Similarity=0.130  Sum_probs=69.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcHH-HHHh-------CCC----ceecChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSPA-VRQQ-------LNA----PFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~-~a~~-------~g~----~~~~~~~~~~~~~aDvVIlav   96 (335)
                      +.+||+|||+|.||.+++..+...| .++.++|++++..+ .+.+       .+.    ..+++.+ .+ ++||+||++.
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l-~~ADiVVita   81 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DI-KDSDVVVITA   81 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-Hh-CCCCEEEECC
Confidence            4679999999999999999999888 58999999986432 1111       111    1234555 44 7999999998


Q ss_pred             --Cc--------------hhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC-CCceEecc
Q 044593           97 --SI--------------LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ-DFDILCTH  147 (335)
Q Consensus        97 --p~--------------~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~-~~~~v~~H  147 (335)
                        |.              ..+.++.+.+. + ..|+.+++.+++.-......+.+..+. ..++++.+
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~-~-~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVK-K-YCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHH-H-HCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence              32              12445666663 2 346666666554322333334333221 13566554

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.18  E-value=4.3e-06  Score=80.92  Aligned_cols=88  Identities=25%  Similarity=0.295  Sum_probs=66.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHhCC---Cce----e---cChhhHhhcCCCEEEEecCch
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSPAVRQQLN---APF----F---ADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~~a~~~g---~~~----~---~~~~~~~~~~aDvVIlavp~~   99 (335)
                      +|||.|||+|.+|+.+|..|+++| .+|++.||+.+.++.+.+..   +..    .   ..+.+++ ++.|+||.|.|..
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li-~~~d~VIn~~p~~   79 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALI-KDFDLVINAAPPF   79 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHH-hcCCEEEEeCCch
Confidence            589999999999999999999999 89999999988876665543   321    1   2334555 7889999999999


Q ss_pred             hHHHHHhhccccccCCccEEEEcC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      ....+++..    ++.|.-++|++
T Consensus        80 ~~~~i~ka~----i~~gv~yvDts   99 (389)
T COG1748          80 VDLTILKAC----IKTGVDYVDTS   99 (389)
T ss_pred             hhHHHHHHH----HHhCCCEEEcc
Confidence            877777543    23445555554

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.17  E-value=9e-06  Score=66.24  Aligned_cols=87  Identities=22%  Similarity=0.304  Sum_probs=60.3

Q ss_pred             eEEEEc-ccHHHHHHHHHHHHcC-CeE-EEEcCCC-CcHHHHHhCC----C---ceec-ChhhHhhcCCCEEEEecCchh
Q 044593           33 KIAVIG-FGNFGQFLAKAFARHH-HTL-LVHSRSD-HSPAVRQQLN----A---PFFA-DLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        33 kI~IIG-~G~mG~siA~~L~~~G-~~V-~~~dr~~-~~~~~a~~~g----~---~~~~-~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ||+||| .|.+|+.+.+.|.+.- +++ .+++++. .........+    .   .... +..++  .++|+||+|+|...
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Dvvf~a~~~~~   78 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL--SDVDVVFLALPHGA   78 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH--TTESEEEE-SCHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh--hcCCEEEecCchhH
Confidence            799999 8999999999999854 354 5566666 2222222221    2   1222 33333  78999999999998


Q ss_pred             HHHHHhhccccccCCccEEEEcCCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ..++...+    ++.|..|+|.++.
T Consensus        79 ~~~~~~~~----~~~g~~ViD~s~~   99 (121)
T PF01118_consen   79 SKELAPKL----LKAGIKVIDLSGD   99 (121)
T ss_dssp             HHHHHHHH----HHTTSEEEESSST
T ss_pred             HHHHHHHH----hhCCcEEEeCCHH
Confidence            88888776    4578899999875

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.15  E-value=9.6e-06  Score=76.05  Aligned_cols=75  Identities=21%  Similarity=0.309  Sum_probs=61.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEc-CCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHS-RSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~d-r~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      ..+++|+||| .|.||..+|..|.++|+.|++|+ |++               ++.+++ +++|+||.|++...   .++
T Consensus       156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~-~~ADIVIsavg~~~---~v~  216 (296)
T PRK14188        156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVC-RRADILVAAVGRPE---MVK  216 (296)
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHH-hcCCEEEEecCChh---hcc
Confidence            4689999999 99999999999999999999995 554               245566 78999999999765   333


Q ss_pred             hccccccCCccEEEEcCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ..   .+++|++|+|++..
T Consensus       217 ~~---~lk~GavVIDvGin  232 (296)
T PRK14188        217 GD---WIKPGATVIDVGIN  232 (296)
T ss_pred             hh---eecCCCEEEEcCCc
Confidence            32   37899999999854

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.15  E-value=8.9e-06  Score=73.59  Aligned_cols=93  Identities=19%  Similarity=0.266  Sum_probs=67.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh--CCCce----ecChhhHh---hcCCCEEEEecCchhHH
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ--LNAPF----FADLNDLC---ELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~--~g~~~----~~~~~~~~---~~~aDvVIlavp~~~~~  102 (335)
                      |+|.|||+|.+|.++|+.|.+.|++|+++|++++..+....  .+...    .++.+.+.   ..++|++|.+|..+...
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N   80 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVN   80 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHH
Confidence            78999999999999999999999999999999987765333  44321    22332221   26899999999999888


Q ss_pred             HHHhhccccccCCccEEEEcCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .++..+....+....+|+-+.+
T Consensus        81 ~i~~~la~~~~gv~~viar~~~  102 (225)
T COG0569          81 SVLALLALKEFGVPRVIARARN  102 (225)
T ss_pred             HHHHHHHHHhcCCCcEEEEecC
Confidence            8877775333444556665543

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.14  E-value=2e-05  Score=72.70  Aligned_cols=100  Identities=20%  Similarity=0.195  Sum_probs=68.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHc-CCeEE-EEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARH-HHTLL-VHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~-G~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      +|||+|||+ |.||..++..+.+. +++++ ++|++++........++..+.++++++ .++|+||.++|+....+++..
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll-~~~DvVid~t~p~~~~~~~~~   79 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVL-ADADVLIDFTTPEATLENLEF   79 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhc-cCCCEEEECCCHHHHHHHHHH
Confidence            479999998 99999999998864 67764 588887654323444666667888877 689999999998887777665


Q ss_pred             ccccccCCcc-EEEEcCCCCchHHHHHHh
Q 044593          108 IPFQRLKRST-LFVDVLSVKEFPRNLFLK  135 (335)
Q Consensus       108 l~~~~l~~~~-iVvd~~SvK~~~~~~l~~  135 (335)
                      ..    +.|. +|+-+.+......+.+.+
T Consensus        80 al----~~G~~vvigttG~s~~~~~~l~~  104 (257)
T PRK00048         80 AL----EHGKPLVIGTTGFTEEQLAELEE  104 (257)
T ss_pred             HH----HcCCCEEEECCCCCHHHHHHHHH
Confidence            52    2333 443333333334444544

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.09  E-value=5.8e-06  Score=78.54  Aligned_cols=90  Identities=20%  Similarity=0.261  Sum_probs=63.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHH-cC-CeEEEEcCCCCcHH-HHHh---CC--CceecChhhHhhcCCCEEEEecCchh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFAR-HH-HTLLVHSRSDHSPA-VRQQ---LN--APFFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~-~G-~~V~~~dr~~~~~~-~a~~---~g--~~~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ....+|+|||+|.||..++.++.. .+ .+|++|+|+++..+ .+.+   .|  +....+..+++ .++|+|+.|||.. 
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av-~~aDIVi~aT~s~-  200 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAV-RQADIISCATLST-  200 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHH-hcCCEEEEeeCCC-
Confidence            456799999999999999987765 44 68999999986543 3333   24  34556777777 7999999999865 


Q ss_pred             HHHHHhhccccccCCccEEEEcCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                       ..++..   ..+++|+.|.-+++
T Consensus       201 -~pvl~~---~~l~~g~~i~~ig~  220 (314)
T PRK06141        201 -EPLVRG---EWLKPGTHLDLVGN  220 (314)
T ss_pred             -CCEecH---HHcCCCCEEEeeCC
Confidence             223321   34678885554544

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.08  E-value=1.4e-05  Score=76.22  Aligned_cols=93  Identities=15%  Similarity=0.113  Sum_probs=68.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcHHH-H---HhCCC--ceecChhhHhhcCCCEEEEecCchh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPAV-R---QQLNA--PFFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~-a---~~~g~--~~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ....+++|||+|.+|.+.+.++...  ..+|.+|||+++..+. +   .+.|+  ....+.++++ +++|+|+.|||...
T Consensus       126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav-~~aDiVitaT~s~~  204 (325)
T TIGR02371       126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAV-EGCDILVTTTPSRK  204 (325)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHh-ccCCEEEEecCCCC
Confidence            3457899999999999988887653  3589999999876532 2   23453  3467888888 89999999998753


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCc
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                        .++.   ...+++|+.|..+++-+.
T Consensus       205 --P~~~---~~~l~~g~~v~~vGs~~p  226 (325)
T TIGR02371       205 --PVVK---ADWVSEGTHINAIGADAP  226 (325)
T ss_pred             --cEec---HHHcCCCCEEEecCCCCc
Confidence              2221   134689999999987543

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.08  E-value=5.9e-06  Score=77.38  Aligned_cols=118  Identities=16%  Similarity=0.101  Sum_probs=73.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhCC-----Cce--ecChhhHhhcCCCEEEEecCch
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQLN-----APF--FADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~g-----~~~--~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      ...++|.|||+|.+|.+++..|...|. +|+++||+.+..+ .+...+     ...  ..+..+.+ .++|+||.|||..
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~-~~aDiVInaTp~G  203 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAAL-AAADGLVHATPTG  203 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhh-CCCCEEEECCcCC
Confidence            356799999999999999999999997 8999999976543 333221     111  22333344 6899999999976


Q ss_pred             hHHHHHhhccccccCCccEEEEcCC--CCchHHHHHHhhCCCCCceEeccccC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLS--VKEFPRNLFLKYLPQDFDILCTHPMF  150 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~S--vK~~~~~~l~~~l~~~~~~v~~HPma  150 (335)
                      .....-..+....++++.+|.|+.-  ..+..++..++   .+.+.+.+..|.
T Consensus       204 m~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~---~G~~~~~G~~ML  253 (284)
T PRK12549        204 MAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARA---LGCRTLDGGGMA  253 (284)
T ss_pred             CCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHH---CCCeEecCHHHH
Confidence            4211001121134677889999853  23344444433   344455444443

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.07  E-value=1.5e-05  Score=70.80  Aligned_cols=92  Identities=17%  Similarity=0.305  Sum_probs=70.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHHc--CCe-EEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARH--HHT-LLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~--G~~-V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      |+|+|||+|.||..+...+...  +++ +.+||++.+... .....+....++++++. .+.|+++-|....++.+...+
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~-~~~DlvVEaAS~~Av~e~~~~   79 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELI-AEVDLVVEAASPEAVREYVPK   79 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHh-hccceeeeeCCHHHHHHHhHH
Confidence            6899999999999999888764  344 688999987764 33445555568889988 899999999999998887776


Q ss_pred             ccccccCCccEEEEcCCCC
Q 044593          108 IPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK  126 (335)
                      +..  -..+.+|++++...
T Consensus        80 ~L~--~g~d~iV~SVGALa   96 (255)
T COG1712          80 ILK--AGIDVIVMSVGALA   96 (255)
T ss_pred             HHh--cCCCEEEEechhcc
Confidence            632  23567888887554

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=98.04  E-value=6.5e-05  Score=70.61  Aligned_cols=160  Identities=13%  Similarity=0.202  Sum_probs=96.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc--CC-----eEEEEcCCCCcH----HH---HHhC--------CC------ceecC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH--HH-----TLLVHSRSDHSP----AV---RQQL--------NA------PFFAD   80 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~--G~-----~V~~~dr~~~~~----~~---a~~~--------g~------~~~~~   80 (335)
                      +...||+|||.|++|+++|+.+.++  ++     +|..|-+.++..    .+   ....        |+      ...+|
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            3457999999999999999998774  12     455554333211    11   1110        22      24567


Q ss_pred             hhhHhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcC-----CCCc----hHHHHHHhhCCCCCceEeccccCC
Q 044593           81 LNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVL-----SVKE----FPRNLFLKYLPQDFDILCTHPMFG  151 (335)
Q Consensus        81 ~~~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~-----SvK~----~~~~~l~~~l~~~~~~v~~HPmaG  151 (335)
                      +.+++ .++|++|..+|.+.+..++++|. .+++++...+++.     +-++    -+.+.+.+.++-...+     +.|
T Consensus        99 l~ea~-~dADilvf~vPhQf~~~ic~~l~-g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~v-----L~G  171 (372)
T KOG2711|consen   99 LVEAA-KDADILVFVVPHQFIPRICEQLK-GYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSV-----LMG  171 (372)
T ss_pred             HHHHh-ccCCEEEEeCChhhHHHHHHHHh-cccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCcee-----ecC
Confidence            88887 89999999999999999999996 7899998887763     1011    1234444544433333     344


Q ss_pred             CCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          152 PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       152 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                      +..+.+....   -|+..+++.... .+.-..+.++|..-.+++...+
T Consensus       172 aNiA~EVa~~---~f~e~tIg~~~~-~~~~~~l~~lf~~p~FrV~~~~  215 (372)
T KOG2711|consen  172 ANIASEVANE---KFCETTIGYKDK-KEAGILLKKLFRTPYFRVVVVE  215 (372)
T ss_pred             CchHHHHHhc---cccceeEeccch-hhcchHHHHHhCCCceEEEEec
Confidence            4443222222   122223333211 1122357889999999877765

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=98.02  E-value=3.5e-05  Score=62.46  Aligned_cols=103  Identities=11%  Similarity=0.111  Sum_probs=70.2

Q ss_pred             CeEEEEc----ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           32 LKIAVIG----FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        32 ~kI~IIG----~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ++|+|||    -+.+|..+...|.+.|++|+.+++......     |...+.++.+.- ...|++++++|...+.+++++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----G~~~y~sl~e~p-~~iDlavv~~~~~~~~~~v~~   74 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----GIKCYPSLAEIP-EPIDLAVVCVPPDKVPEIVDE   74 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----TEE-BSSGGGCS-ST-SEEEE-S-HHHHHHHHHH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----cEEeeccccCCC-CCCCEEEEEcCHHHHHHHHHH
Confidence            4799999    699999999999999999999988765543     666777777643 689999999999999999999


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEe
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC  145 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~  145 (335)
                      +.  .+..+.+++-.++......+.+++   .+.++++
T Consensus        75 ~~--~~g~~~v~~~~g~~~~~~~~~a~~---~gi~vig  107 (116)
T PF13380_consen   75 AA--ALGVKAVWLQPGAESEELIEAARE---AGIRVIG  107 (116)
T ss_dssp             HH--HHT-SEEEE-TTS--HHHHHHHHH---TT-EEEE
T ss_pred             HH--HcCCCEEEEEcchHHHHHHHHHHH---cCCEEEe
Confidence            84  255667777766443333333333   3566664

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.01  E-value=1.6e-05  Score=78.58  Aligned_cols=94  Identities=22%  Similarity=0.346  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCCCce--ecChhhHhhcCCCEEEEecCchhH---
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLNAPF--FADLNDLCELHPDVVLLSTSILST---  101 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~~---  101 (335)
                      ...++|+|||+|.||..++..|...|+ +|++++|+++.. ..+.+.|...  ..+..+.+ .++|+||.||+....   
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l-~~aDvVI~aT~s~~~~i~  258 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEAL-AEADIVISSTGAPHPIIG  258 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHh-ccCCEEEECCCCCCcEEc
Confidence            456899999999999999999999997 899999998654 4566666432  23344555 789999999986642   


Q ss_pred             HHHHhhccccccCCccEEEEcC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      .+.++......-..+.+++|++
T Consensus       259 ~~~l~~~~~~~~~~~~vviDla  280 (423)
T PRK00045        259 KGMVERALKARRHRPLLLVDLA  280 (423)
T ss_pred             HHHHHHHHhhccCCCeEEEEeC
Confidence            3344332101112457899986

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=98.01  E-value=3.4e-05  Score=72.41  Aligned_cols=94  Identities=21%  Similarity=0.199  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CCeE-EEEcCCCCc--HHHHHhCCCce-ecChhhHhh----cCCCEEEEecCch
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HHTL-LVHSRSDHS--PAVRQQLNAPF-FADLNDLCE----LHPDVVLLSTSIL   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V-~~~dr~~~~--~~~a~~~g~~~-~~~~~~~~~----~~aDvVIlavp~~   99 (335)
                      |+.+||+|||+|.||..+...+.+. +.++ .++|++++.  .+.+++.|+.. +.+.++++.    .+.|+|+.|||..
T Consensus         2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~   81 (302)
T PRK08300          2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG   81 (302)
T ss_pred             CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence            4568999999999999988777764 4576 467888764  35678889875 467777762    3689999999998


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK  126 (335)
                      ...+.....    .+.|+.|+|.++..
T Consensus        82 ~H~e~a~~a----~eaGk~VID~sPA~  104 (302)
T PRK08300         82 AHVRHAAKL----REAGIRAIDLTPAA  104 (302)
T ss_pred             HHHHHHHHH----HHcCCeEEECCccc
Confidence            877776655    35788999987654

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.00  E-value=1.9e-05  Score=68.17  Aligned_cols=77  Identities=21%  Similarity=0.311  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEcccHH-HHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           28 KSTSLKIAVIGFGNF-GQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~m-G~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      ...+.+|.|||.|.| |..++..|.+.|.+|++++|+.+              ++.+.+ .++|+||.||+...   ++.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~--------------~l~~~l-~~aDiVIsat~~~~---ii~  102 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK--------------NLKEHT-KQADIVIVAVGKPG---LVK  102 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch--------------hHHHHH-hhCCEEEEcCCCCc---eec
Confidence            356799999999997 77799999999999999998742              334455 78999999999764   222


Q ss_pred             hccccccCCccEEEEcCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .   ..++++.+|+|++.-
T Consensus       103 ~---~~~~~~~viIDla~p  118 (168)
T cd01080         103 G---DMVKPGAVVIDVGIN  118 (168)
T ss_pred             H---HHccCCeEEEEccCC
Confidence            1   236678999999854

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.98  E-value=3.3e-05  Score=71.63  Aligned_cols=77  Identities=21%  Similarity=0.301  Sum_probs=54.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc-CCeEE-EEcCCCCcHHHHHh--CCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH-HHTLL-VHSRSDHSPAVRQQ--LNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~-G~~V~-~~dr~~~~~~~a~~--~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      ++||+|||+|.||..+++.+.+. +.++. +++++....+....  .++..+++.+++. .++|+|+.|+|.....+...
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~-~~~DvVve~t~~~~~~e~~~   79 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALP-QRPDLVVECAGHAALKEHVV   79 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhc-cCCCEEEECCCHHHHHHHHH
Confidence            47999999999999999999875 45653 44554332221222  2556677787773 67999999999987766666


Q ss_pred             hc
Q 044593          107 SI  108 (335)
Q Consensus       107 ~l  108 (335)
                      ..
T Consensus        80 ~a   81 (265)
T PRK13303         80 PI   81 (265)
T ss_pred             HH
Confidence            54

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.97  E-value=4.9e-05  Score=72.06  Aligned_cols=87  Identities=20%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc-CCeEEE-EcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH-HHTLLV-HSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~-G~~V~~-~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      +.+||+|||+|+||..++.++.+. ++++++ +|+++... .....++....+..++. .++|+|++|+|...-.+....
T Consensus         2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~-~~~~~~v~~~~d~~e~l-~~iDVViIctPs~th~~~~~~   79 (324)
T TIGR01921         2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAET-LDTETPVYAVADDEKHL-DDVDVLILCMGSATDIPEQAP   79 (324)
T ss_pred             CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHH-HhhcCCccccCCHHHhc-cCCCEEEEcCCCccCHHHHHH
Confidence            458999999999999999999875 678764 69986221 12234444445555565 789999999997654333332


Q ss_pred             ccccccCCccEEEEc
Q 044593          108 IPFQRLKRSTLFVDV  122 (335)
Q Consensus       108 l~~~~l~~~~iVvd~  122 (335)
                      +    +..|.-|+|.
T Consensus        80 ~----L~aG~NVV~s   90 (324)
T TIGR01921        80 Y----FAQFANTVDS   90 (324)
T ss_pred             H----HHcCCCEEEC
Confidence            2    3344455554

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.96  E-value=1.2e-05  Score=75.04  Aligned_cols=95  Identities=15%  Similarity=0.230  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcHH-HHHhCCC----ceecChhhHhhcCCCEEEEecCchhHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSPA-VRQQLNA----PFFADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~-~a~~~g~----~~~~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      ...+++.|+|+|.+|.+++.+|...| .+|++++|+.+..+ .+.+.+.    ....+..+.+ .++|+||-|||.....
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~-~~~DivInaTp~g~~~  199 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEEL-ADFDLIINATSAGMSG  199 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhcc-ccCCEEEECCcCCCCC
Confidence            35678999999999999999999999 69999999976543 3333221    1111223444 6899999999977532


Q ss_pred             HH-HhhccccccCCccEEEEcCC
Q 044593          103 SV-LKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       103 ~v-l~~l~~~~l~~~~iVvd~~S  124 (335)
                      .. ...+....++++.+|+|+.-
T Consensus       200 ~~~~~~~~~~~l~~~~~v~DivY  222 (278)
T PRK00258        200 ELPLPPLPLSLLRPGTIVYDMIY  222 (278)
T ss_pred             CCCCCCCCHHHcCCCCEEEEeec
Confidence            10 01111134678899999964

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=97.95  E-value=3.9e-05  Score=75.88  Aligned_cols=71  Identities=15%  Similarity=0.095  Sum_probs=51.3

Q ss_pred             CeEEEEcccHHHHHHHH--HH----HHcCCeEEEEcCCCCcHHHHHh--------CC----CceecChhhHhhcCCCEEE
Q 044593           32 LKIAVIGFGNFGQFLAK--AF----ARHHHTLLVHSRSDHSPAVRQQ--------LN----APFFADLNDLCELHPDVVL   93 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~--~L----~~~G~~V~~~dr~~~~~~~a~~--------~g----~~~~~~~~~~~~~~aDvVI   93 (335)
                      +||+|||.|.||.+++.  .+    ...|++|++||++++..+....        .+    +..++|..+++ ++||+||
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal-~~AD~Vi   79 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREAL-DGADFVI   79 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHh-cCCCEEE
Confidence            58999999999998666  34    3457899999999875542211        12    23466777777 8999999


Q ss_pred             EecCchhHHH
Q 044593           94 LSTSILSTQS  103 (335)
Q Consensus        94 lavp~~~~~~  103 (335)
                      .++|......
T Consensus        80 ~ai~~~~~~~   89 (423)
T cd05297          80 NTIQVGGHEY   89 (423)
T ss_pred             EeeEecCccc
Confidence            9999755433

linked to 3D####ucture

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.94  E-value=6.6e-05  Score=71.06  Aligned_cols=65  Identities=20%  Similarity=0.405  Sum_probs=48.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHH-HHHhC-------CC--ce-ecChhhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPA-VRQQL-------NA--PF-FADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~-~a~~~-------g~--~~-~~~~~~~~~~~aDvVIlavp~   98 (335)
                      +||+|||+|.+|+++|..|...|  ++|+++|++++..+ .+.++       +.  .. ..+.++ + .+||+||+++..
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l-~~aDIVIitag~   78 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-C-KDADIVVITAGA   78 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-h-CCCCEEEEccCC
Confidence            48999999999999999999999  58999999987543 22221       11  12 233344 4 799999999975

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.93  E-value=3.5e-05  Score=76.07  Aligned_cols=93  Identities=22%  Similarity=0.370  Sum_probs=65.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcH-HHHHhCCCce--ecChhhHhhcCCCEEEEecCchhH---
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSP-AVRQQLNAPF--FADLNDLCELHPDVVLLSTSILST---  101 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~-~~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~~---  101 (335)
                      ....+|+|||+|.||..++..|...| .+|++++|+.+.. +.+...|...  ..+..+.+ .++|+||.||+....   
T Consensus       178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l-~~aDvVi~aT~s~~~ii~  256 (417)
T TIGR01035       178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYL-AEADIVISSTGAPHPIVS  256 (417)
T ss_pred             ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHH-hhCCEEEECCCCCCceEc
Confidence            45689999999999999999999999 6899999998653 4566655432  23445555 789999999976542   


Q ss_pred             HHHHhhccccccCCccEEEEcC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      .+.++... ..-+...+++|++
T Consensus       257 ~e~l~~~~-~~~~~~~~viDla  277 (417)
T TIGR01035       257 KEDVERAL-RERTRPLFIIDIA  277 (417)
T ss_pred             HHHHHHHH-hcCCCCeEEEEeC
Confidence            33444331 1001235889986

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PLN00203 glutamyl-tRNA reductase

Probab=97.92  E-value=2.8e-05  Score=78.43  Aligned_cols=94  Identities=26%  Similarity=0.417  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhC-CCc----eecChhhHhhcCCCEEEEecCchh-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQL-NAP----FFADLNDLCELHPDVVLLSTSILS-  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~-g~~----~~~~~~~~~~~~aDvVIlavp~~~-  100 (335)
                      ....+|+|||+|.||..++..|...|+ +|++++|+.+..+ .+... +..    ...+..+.+ .++|+||.||+... 
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al-~~aDVVIsAT~s~~p  342 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACA-AEADVVFTSTSSETP  342 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHH-hcCCEEEEccCCCCC
Confidence            347899999999999999999999997 7999999986643 34443 322    223455556 78999999987554 


Q ss_pred             --HHHHHhhcccc--ccCCccEEEEcC
Q 044593          101 --TQSVLKSIPFQ--RLKRSTLFVDVL  123 (335)
Q Consensus       101 --~~~vl~~l~~~--~l~~~~iVvd~~  123 (335)
                        ..+.++.+...  .-....+++|++
T Consensus       343 vI~~e~l~~~~~~~~~~~~~~~~IDLA  369 (519)
T PLN00203        343 LFLKEHVEALPPASDTVGGKRLFVDIS  369 (519)
T ss_pred             eeCHHHHHHhhhcccccCCCeEEEEeC
Confidence              45666665210  001225899986

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=97.91  E-value=4.3e-05  Score=72.07  Aligned_cols=62  Identities=27%  Similarity=0.371  Sum_probs=44.7

Q ss_pred             EEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHH---h----CCC----ceecChhhHhhcCCCEEEEecC
Q 044593           34 IAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQ---Q----LNA----PFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~---~----~g~----~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |+|||+|.||..+|..+...|+ +|+++|++++..+ .+.   .    .+.    ..+.+.++ + ++||+||++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l-~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-I-AGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-h-CCCCEEEEecC
Confidence            6899999999999999998876 9999999976432 111   1    011    12345554 4 79999999873

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=3e-05  Score=72.18  Aligned_cols=76  Identities=14%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|+|||. |.||..+|..|.++|+.|++|....              .++.+.+ ++||+||.|++....   ++.
T Consensus       156 l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t--------------~~l~~~~-~~ADIVI~avg~~~~---v~~  217 (284)
T PRK14179        156 LEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT--------------RNLAEVA-RKADILVVAIGRGHF---VTK  217 (284)
T ss_pred             CCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC--------------CCHHHHH-hhCCEEEEecCcccc---CCH
Confidence            35789999997 9999999999999999999993221              1456666 799999999997653   222


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                         ..+++|++|+|++..
T Consensus       218 ---~~ik~GavVIDvgin  232 (284)
T PRK14179        218 ---EFVKEGAVVIDVGMN  232 (284)
T ss_pred             ---HHccCCcEEEEecce
Confidence               237899999999754

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.89  E-value=0.00012  Score=69.55  Aligned_cols=69  Identities=20%  Similarity=0.381  Sum_probs=50.2

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC--------CCcee-cChhhHhhcCCCEEEE
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL--------NAPFF-ADLNDLCELHPDVVLL   94 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~--------g~~~~-~~~~~~~~~~aDvVIl   94 (335)
                      ++...+||+|||+|.+|+++|..|...|.  ++.++|++++..+ .+.++        ..... .+.++ + ++||+||+
T Consensus         2 ~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~-~~adivIi   79 (315)
T PRK00066          2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-C-KDADLVVI   79 (315)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-h-CCCCEEEE
Confidence            45667899999999999999999999887  8999999876532 22221        11222 33444 4 89999999


Q ss_pred             ecC
Q 044593           95 STS   97 (335)
Q Consensus        95 avp   97 (335)
                      +.-
T Consensus        80 tag   82 (315)
T PRK00066         80 TAG   82 (315)
T ss_pred             ecC
Confidence            764

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=97.88  E-value=9.1e-05  Score=69.24  Aligned_cols=90  Identities=21%  Similarity=0.269  Sum_probs=66.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHH-cCCeE-EEEcCCCCc--HHHHHhCCCce-ecChhhHhh-cCCCEEEEecCchhHHHHH
Q 044593           32 LKIAVIGFGNFGQFLAKAFAR-HHHTL-LVHSRSDHS--PAVRQQLNAPF-FADLNDLCE-LHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~-~G~~V-~~~dr~~~~--~~~a~~~g~~~-~~~~~~~~~-~~aDvVIlavp~~~~~~vl  105 (335)
                      +||+|||+|.||..++..+.+ .++++ .++|+++++  .+.+++.|+.. +.+.++++. .+.|+|++|||.....+..
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a   81 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA   81 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence            689999999999988777765 35676 467888865  45677888864 446677652 3689999999999877766


Q ss_pred             hhccccccCCccEEEEcCCC
Q 044593          106 KSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ...    ++.|..|+|..+.
T Consensus        82 ~~a----l~aGk~VIdekPa   97 (285)
T TIGR03215        82 RLL----AELGKIVIDLTPA   97 (285)
T ss_pred             HHH----HHcCCEEEECCcc
Confidence            554    3467788887544

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.86  E-value=6.1e-05  Score=71.22  Aligned_cols=92  Identities=20%  Similarity=0.156  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHH-cCC-eEEEEcCCCCcH-HHHHhC---CCce-ecChhhHhhcCCCEEEEecCchhH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFAR-HHH-TLLVHSRSDHSP-AVRQQL---NAPF-FADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~-~G~-~V~~~dr~~~~~-~~a~~~---g~~~-~~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      ....+++|||+|.+|...+.++.. .+. +|.+|+|+++.. +.+.+.   ++.. ..+.++++ .++|+||.|||... 
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av-~~aDiVitaT~s~~-  200 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIP-EAVDLVVTATTSRT-  200 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHh-hcCCEEEEccCCCC-
Confidence            456799999999999999999975 554 799999998654 333332   3332 35677777 89999999999775 


Q ss_pred             HHHHhhccccccCCccEEEEcCCCCc
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                       .++.    ..+++|+.|.-+++-+.
T Consensus       201 -Pl~~----~~~~~g~hi~~iGs~~p  221 (304)
T PRK07340        201 -PVYP----EAARAGRLVVAVGAFTP  221 (304)
T ss_pred             -ceeC----ccCCCCCEEEecCCCCC
Confidence             3332    23689999999987654

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.85  E-value=6.2e-05  Score=73.14  Aligned_cols=94  Identities=16%  Similarity=0.194  Sum_probs=64.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-hCCCce---e---cChhhHhhcCCCEEEEecCch--h
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-QLNAPF---F---ADLNDLCELHPDVVLLSTSIL--S  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-~~g~~~---~---~~~~~~~~~~aDvVIlavp~~--~  100 (335)
                      ...+|.|||+|.+|...+..++..|.+|+++|++++..+.+. ..+...   .   .++.+.+ .++|+||.|++..  .
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l-~~aDvVI~a~~~~g~~  244 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAV-KRADLLIGAVLIPGAK  244 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHH-ccCCEEEEccccCCCC
Confidence            456899999999999999999999999999999987654443 334321   1   2234455 7899999998432  1


Q ss_pred             HHHHH-hhccccccCCccEEEEcCCC
Q 044593          101 TQSVL-KSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 ~~~vl-~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ...++ ++.. ..++++.+|+|++.-
T Consensus       245 ~p~lit~~~l-~~mk~g~vIvDva~d  269 (370)
T TIGR00518       245 APKLVSNSLV-AQMKPGAVIVDVAID  269 (370)
T ss_pred             CCcCcCHHHH-hcCCCCCEEEEEecC
Confidence            11111 1111 236788999998744

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=0.00011  Score=65.46  Aligned_cols=162  Identities=12%  Similarity=0.044  Sum_probs=92.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec---ChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA---DLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~---~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      ..+.+++||.|..|........+.++.+..  .+..+.+.++.+--....   +..... +-.+++|+-+|...+.++..
T Consensus         9 ~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~--i~srS~~~a~~LaE~~~a~p~d~~~~a-el~~~vfv~vpd~~~s~vaa   85 (289)
T COG5495           9 ARVVVGIVGTGRLGRAALLRADHVVVACSA--ISSRSRDRAQNLAETYVAPPLDVAKSA-ELLLLVFVDVPDALYSGVAA   85 (289)
T ss_pred             eeeEEEEeecchHHHHHHHHhcchheeehh--hhhcCHHHHhhchhccCCCccchhhCh-hhhceEEecchHHHHHHHHH
Confidence            457899999999999843333333333322  222233333332111111   112222 44688999999886666655


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccc---cCCCcceecccccCCChhHHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSS---WENLPFMYDKVRIGNDEERIKRVDK  183 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~---~~g~~~i~~~~~~~~~~~~~~~~~~  183 (335)
                      ..   ...+|++|++|++..+.  ..+...-..+.--.+.||.|.....++.   .++..+.+.    ..|   ...+..
T Consensus        86 ~~---~~rpg~iv~HcSga~~~--~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~----eaD---~~g~ai  153 (289)
T COG5495          86 TS---LNRPGTIVAHCSGANGS--GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGIT----EAD---DVGYAI  153 (289)
T ss_pred             hc---ccCCCeEEEEccCCCch--hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEee----ccc---ccccHH
Confidence            44   25799999999876442  3333322234445688998866543221   234433331    122   234567


Q ss_pred             HHHHHHhcCCEEEEeChHHHHHH
Q 044593          184 FLDVFAKEGCRMVEMSCFDHDKY  206 (335)
Q Consensus       184 v~~l~~~~G~~v~~~~~~eHD~~  206 (335)
                      ++++...+|++++.+.+++.-.+
T Consensus       154 ~q~la~emgg~~f~V~~~~r~lY  176 (289)
T COG5495         154 VQSLALEMGGEPFCVREEARILY  176 (289)
T ss_pred             HHHHHHHhCCCceeechhHHHHH
Confidence            78999999999999988765443

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.85  E-value=4.1e-05  Score=72.51  Aligned_cols=65  Identities=22%  Similarity=0.369  Sum_probs=48.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHH-HHHhCC-C-------c-eecChhhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPA-VRQQLN-A-------P-FFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~-~a~~~g-~-------~-~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      |||+|||+|.+|.++|..|...|  .+|.++|++++..+ .+.++. .       . .+.+.++ + ++||+||+|++.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l-~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-C-KGADVVVITAGA   77 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-h-CCCCEEEEccCC
Confidence            68999999999999999999999  58999999986543 222211 1       1 1234444 4 799999999985

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=97.82  E-value=6.6e-05  Score=70.46  Aligned_cols=92  Identities=16%  Similarity=0.292  Sum_probs=72.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHhhc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLKSI  108 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~~l  108 (335)
                      .++++||+|+|.||+-+|..++..|..|++||+=.. .+.+...|++.. +++++. ..||+|-+-+|.. .+..++.+-
T Consensus       145 ~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~v-sl~Eil-~~ADFitlH~PLtP~T~~lin~~  221 (406)
T KOG0068|consen  145 RGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLV-SLEEIL-PKADFITLHVPLTPSTEKLLNDE  221 (406)
T ss_pred             eccEEEEeecccchHHHHHHHHhcCceEEeecCCCc-hHHHHhccceee-eHHHHH-hhcCEEEEccCCCcchhhccCHH
Confidence            478999999999999999999999999999986543 334777888764 467776 7899999999965 366666543


Q ss_pred             cccccCCccEEEEcCC
Q 044593          109 PFQRLKRSTLFVDVLS  124 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~S  124 (335)
                      ....+|+|..|++++-
T Consensus       222 tfA~mKkGVriIN~aR  237 (406)
T KOG0068|consen  222 TFAKMKKGVRIINVAR  237 (406)
T ss_pred             HHHHhhCCcEEEEecC
Confidence            2345899999999964

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.81  E-value=7.9e-05  Score=61.03  Aligned_cols=100  Identities=20%  Similarity=0.248  Sum_probs=64.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHH-cCCeE-EEEcCCCCc-H--HHH-----HhCCCceecChhhHhhcCCCEEEEecCchh
Q 044593           32 LKIAVIGF-GNFGQFLAKAFAR-HHHTL-LVHSRSDHS-P--AVR-----QQLNAPFFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~-~G~~V-~~~dr~~~~-~--~~a-----~~~g~~~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      |||+|+|+ |.||..++..+.+ .++++ .++|+++.. .  +..     ...|+..+++++++. ..+|+||-.+-+..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~-~~~DVvIDfT~p~~   79 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELL-EEADVVIDFTNPDA   79 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHT-TH-SEEEEES-HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhc-ccCCEEEEcCChHH
Confidence            68999999 9999999999998 67785 567888721 1  111     134566778888887 67999999997777


Q ss_pred             HHHHHhhccccccCCcc-EEEEcCCCCchHHHHHHhh
Q 044593          101 TQSVLKSIPFQRLKRST-LFVDVLSVKEFPRNLFLKY  136 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~-iVvd~~SvK~~~~~~l~~~  136 (335)
                      +.+.++...    +.+. +|+=+++-.....+.+++.
T Consensus        80 ~~~~~~~~~----~~g~~~ViGTTG~~~~~~~~l~~~  112 (124)
T PF01113_consen   80 VYDNLEYAL----KHGVPLVIGTTGFSDEQIDELEEL  112 (124)
T ss_dssp             HHHHHHHHH----HHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred             hHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHH
Confidence            777776653    2233 4444444433444555554

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.80  E-value=9.2e-05  Score=68.06  Aligned_cols=92  Identities=14%  Similarity=0.192  Sum_probs=64.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC---CeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH---HTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G---~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      .+||+|||+|.||..++..+.+.+   +++ .+++++++..+...+ .....+++++++...+|+||-|.+...+.+...
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~   80 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-RVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAE   80 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-cCcccCCHHHHhhcCCCEEEECCCHHHHHHHHH
Confidence            479999999999999999987642   554 457777644432322 255677888863378999999999998888777


Q ss_pred             hccccccCCccEEEEcCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .+..  -..+-++++++..
T Consensus        81 ~iL~--~g~dlvv~SvGAL   97 (267)
T PRK13301         81 GCLT--AGLDMIICSAGAL   97 (267)
T ss_pred             HHHh--cCCCEEEEChhHh
Confidence            6621  1234456665543

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.80  E-value=7.2e-05  Score=71.42  Aligned_cols=92  Identities=17%  Similarity=0.195  Sum_probs=67.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHH-cCC-eEEEEcCCCCcHH-HHH----hCCCc--eecChhhHhhcCCCEEEEecCch
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFAR-HHH-TLLVHSRSDHSPA-VRQ----QLNAP--FFADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~-~G~-~V~~~dr~~~~~~-~a~----~~g~~--~~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      ....+++|||+|.+|.+.+.++.. .+. +|.+|+|+++..+ .+.    +.++.  ...+.++++ .++|+||.|||..
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~aDiVi~aT~s~  203 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAI-EEADIIVTVTNAK  203 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHH-hcCCEEEEccCCC
Confidence            346789999999999999988764 454 7999999987543 222    23443  356777777 8999999999977


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCCc
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                      .  .++.    ..+++|+.|..+++-+.
T Consensus       204 ~--p~i~----~~l~~G~hV~~iGs~~p  225 (325)
T PRK08618        204 T--PVFS----EKLKKGVHINAVGSFMP  225 (325)
T ss_pred             C--cchH----HhcCCCcEEEecCCCCc
Confidence            4  2333    13679999999987643

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.80  E-value=9.8e-05  Score=70.95  Aligned_cols=90  Identities=20%  Similarity=0.159  Sum_probs=63.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc-CCeEEE-EcCCCCcHH-HHHhCC------------------CceecChhhHhhcCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH-HHTLLV-HSRSDHSPA-VRQQLN------------------APFFADLNDLCELHP   89 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~-G~~V~~-~dr~~~~~~-~a~~~g------------------~~~~~~~~~~~~~~a   89 (335)
                      ++||+|+|+|.||..+++.+.+. ++++++ +|++++... .+...|                  +....+..++. .++
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~-~~v   79 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLL-EKA   79 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhh-ccC
Confidence            46999999999999999998864 567754 576654332 233222                  22334556665 689


Q ss_pred             CEEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           90 DVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        90 DvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      |+||.|+|.....+.....    ++.|+.+++.++.
T Consensus        80 DVVIdaT~~~~~~e~a~~~----~~aGk~VI~~~~~  111 (341)
T PRK04207         80 DIVVDATPGGVGAKNKELY----EKAGVKAIFQGGE  111 (341)
T ss_pred             CEEEECCCchhhHHHHHHH----HHCCCEEEEcCCC
Confidence            9999999998877777654    4467888888775

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.79  E-value=5.6e-05  Score=74.56  Aligned_cols=70  Identities=16%  Similarity=0.229  Sum_probs=48.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      |+.++|+|||+|.+|.++|+.|++.|++|+++|+++.........+-....+..... .++|++|.+.+..
T Consensus         1 ~~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvV~s~gi~   70 (418)
T PRK00683          1 MGLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFP-EQVDLVVRSPGIK   70 (418)
T ss_pred             CCCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHh-cCCCEEEECCCCC
Confidence            345789999999999999999999999999999887543211100001112223333 5799999987654

>PRK06046 alanine dehydrogenase; Validated

Probab=97.79  E-value=7.3e-05  Score=71.40  Aligned_cols=92  Identities=18%  Similarity=0.228  Sum_probs=66.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CC-eEEEEcCCCCcHHH-HHh----CCC--ceecChhhHhhcCCCEEEEecCch
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HH-TLLVHSRSDHSPAV-RQQ----LNA--PFFADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~-~V~~~dr~~~~~~~-a~~----~g~--~~~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      ....+|+|||+|.+|...+.++... +. +|.+|||+++..+. +.+    .+.  ....+.++++ + +|+|+.|||..
T Consensus       127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~-aDiVv~aTps~  204 (326)
T PRK06046        127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEAC-D-CDILVTTTPSR  204 (326)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHh-h-CCEEEEecCCC
Confidence            3457899999999999999999753 44 68899999865432 222    243  3456777776 5 99999999976


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCCc
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                      .  .++.   ...+++|+.|..+++-+.
T Consensus       205 ~--P~~~---~~~l~~g~hV~~iGs~~p  227 (326)
T PRK06046        205 K--PVVK---AEWIKEGTHINAIGADAP  227 (326)
T ss_pred             C--cEec---HHHcCCCCEEEecCCCCC
Confidence            4  2222   134689999999987654

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.78  E-value=0.00017  Score=68.37  Aligned_cols=65  Identities=17%  Similarity=0.198  Sum_probs=47.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC-------C---CceecChhhHhhcCCCEEEEecC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL-------N---APFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~-------g---~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      .+||+|||+|.+|+++|..|...|.  ++.++|++++..+ .+.++       .   +..+.+.++ + ++||+||++.-
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~-~~adivvitaG   80 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-T-ANSKVVIVTAG   80 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-h-CCCCEEEECCC
Confidence            4699999999999999999998885  7999999876432 12221       1   112345665 4 79999999653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.78  E-value=9.9e-05  Score=70.49  Aligned_cols=90  Identities=16%  Similarity=0.154  Sum_probs=65.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHH-cCC-eEEEEcCCCCcHH-HHHh----CCCc--eecChhhHhhcCCCEEEEecCchh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFAR-HHH-TLLVHSRSDHSPA-VRQQ----LNAP--FFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~-~G~-~V~~~dr~~~~~~-~a~~----~g~~--~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ...+++|||+|.+|...+.+|.. .+. +|++|+|+++..+ .+.+    .|+.  ...+..+.+ .++|+||.|||...
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av-~~aDiVvtaT~s~~  206 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAM-SGADIIVTTTPSET  206 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHh-ccCCEEEEecCCCC
Confidence            45689999999999999999974 564 7999999986543 3332    2543  356677777 89999999999754


Q ss_pred             HHHHHhhccccccCCccEEEEcCCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                        .++.   ...+++|+.|..+++-
T Consensus       207 --p~i~---~~~l~~g~~i~~vg~~  226 (326)
T TIGR02992       207 --PILH---AEWLEPGQHVTAMGSD  226 (326)
T ss_pred             --cEec---HHHcCCCcEEEeeCCC
Confidence              2222   1346788888888754

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.77  E-value=9.7e-05  Score=71.06  Aligned_cols=90  Identities=17%  Similarity=0.242  Sum_probs=60.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHc-CCeEEE-EcCCCCcHHHHHhCC-Cc-----eecChhh-HhhcCCCEEEEecCchh
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARH-HHTLLV-HSRSDHSPAVRQQLN-AP-----FFADLND-LCELHPDVVLLSTSILS  100 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~-G~~V~~-~dr~~~~~~~a~~~g-~~-----~~~~~~~-~~~~~aDvVIlavp~~~  100 (335)
                      ++||+|||+ |.+|..+++.|.+. +++++. +++...........+ +.     .+.+.++ .. .++|+|++|+|...
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~-~~vD~Vf~alP~~~   80 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEIL-AGADVVFLALPHGV   80 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHh-cCCCEEEECCCcHH
Confidence            479999996 99999999999876 567644 554332222121111 11     1222222 33 67999999999998


Q ss_pred             HHHHHhhccccccCCccEEEEcCCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ..++...+.    +.|..|+|.++-
T Consensus        81 ~~~~v~~a~----~aG~~VID~S~~  101 (343)
T PRK00436         81 SMDLAPQLL----EAGVKVIDLSAD  101 (343)
T ss_pred             HHHHHHHHH----hCCCEEEECCcc
Confidence            888887763    368899999875

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.75  E-value=6.6e-05  Score=74.50  Aligned_cols=90  Identities=19%  Similarity=0.222  Sum_probs=62.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-CCCcee----cCh---hhH-hhcCCCEEEEecCchhHH
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-LNAPFF----ADL---NDL-CELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-~g~~~~----~~~---~~~-~~~~aDvVIlavp~~~~~  102 (335)
                      |+|.|+|+|.+|..++..|.+.|++|+++|++++..+.+.+ .|+...    .+.   .++ + .++|.||++++.+...
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~-~~a~~vi~~~~~~~~n   79 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGA-EDADLLIAVTDSDETN   79 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCC-CcCCEEEEecCChHHH
Confidence            68999999999999999999999999999999887765554 454321    122   222 3 6899999999987765


Q ss_pred             HHHhhccccccCCccEEEEc
Q 044593          103 SVLKSIPFQRLKRSTLFVDV  122 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~  122 (335)
                      ..+........+...+|+.+
T Consensus        80 ~~~~~~~r~~~~~~~ii~~~   99 (453)
T PRK09496         80 MVACQIAKSLFGAPTTIARV   99 (453)
T ss_pred             HHHHHHHHHhcCCCeEEEEE
Confidence            54433321222344555554

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.75  E-value=7.7e-05  Score=65.65  Aligned_cols=93  Identities=20%  Similarity=0.134  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHH-HHhC----CCce----ecCh---hhHhhcCCCEEEEe
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAV-RQQL----NAPF----FADL---NDLCELHPDVVLLS   95 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~-a~~~----g~~~----~~~~---~~~~~~~aDvVIla   95 (335)
                      .+.+++.|+|. |.+|..++..|.+.|++|++++|+.+..+. +...    +...    ..+.   .+.+ .++|+||.|
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~diVi~a  104 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAI-KGADVVFAA  104 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHH-hcCCEEEEC
Confidence            35689999995 999999999999999999999998754332 2211    2211    1222   2445 789999999


Q ss_pred             cCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           96 TSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        96 vp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      +|.....  .... ....+++.+++|+.-.
T Consensus       105 t~~g~~~--~~~~-~~~~~~~~vv~D~~~~  131 (194)
T cd01078         105 GAAGVEL--LEKL-AWAPKPLAVAADVNAV  131 (194)
T ss_pred             CCCCcee--chhh-hcccCceeEEEEccCC
Confidence            9977641  1111 1224457899998644

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=97.75  E-value=9.7e-05  Score=70.31  Aligned_cols=78  Identities=18%  Similarity=0.250  Sum_probs=59.1

Q ss_pred             CCCCeEEEEcccHHH-HHHHHHHHHcC--Ce-EEEEcCCCCcH-HHHHhCCCc-eecChhhHhh-cCCCEEEEecCchhH
Q 044593           29 STSLKIAVIGFGNFG-QFLAKAFARHH--HT-LLVHSRSDHSP-AVRQQLNAP-FFADLNDLCE-LHPDVVLLSTSILST  101 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG-~siA~~L~~~G--~~-V~~~dr~~~~~-~~a~~~g~~-~~~~~~~~~~-~~aDvVIlavp~~~~  101 (335)
                      ++++||||||+|.++ ...+..+.+.+  .+ |.++|++++.. +.+.+.|+. .+++.++++. .+.|+|++|+|+..-
T Consensus         1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H   80 (342)
T COG0673           1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH   80 (342)
T ss_pred             CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence            467899999999666 45888888866  24 56779998764 567778885 7788888873 237999999999886


Q ss_pred             HHHHh
Q 044593          102 QSVLK  106 (335)
Q Consensus       102 ~~vl~  106 (335)
                      .++..
T Consensus        81 ~e~~~   85 (342)
T COG0673          81 AELAL   85 (342)
T ss_pred             HHHHH
Confidence            65553

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.74  E-value=0.00021  Score=66.10  Aligned_cols=88  Identities=22%  Similarity=0.255  Sum_probs=58.9

Q ss_pred             EEEEcc-cHHHHHHHHHHHHcC----CeEEEEcCCCCcHHHH-H-------hC---CCceecChhhHhhcCCCEEEEecC
Q 044593           34 IAVIGF-GNFGQFLAKAFARHH----HTLLVHSRSDHSPAVR-Q-------QL---NAPFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        34 I~IIG~-G~mG~siA~~L~~~G----~~V~~~dr~~~~~~~a-~-------~~---g~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |+|||+ |.||..++..|...|    .+|+++|++++..+.. .       ..   .+..++|..+.+ ++||+||++.-
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~-~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAF-KDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHh-CCCCEEEECCC
Confidence            689999 999999999999988    6899999998654311 1       11   222344545556 89999999652


Q ss_pred             c----------------hhHHHHHhhccccccCCccEEEEcCC
Q 044593           98 I----------------LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~----------------~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .                ..+.++.+.+. . ..++++++.++.
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~-~-~~p~a~~i~~tN  120 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIE-K-YSPDAWIIVVSN  120 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHH-H-HCCCeEEEEecC
Confidence            2                12445555553 2 346777777653

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=97.71  E-value=0.00048  Score=63.91  Aligned_cols=100  Identities=23%  Similarity=0.253  Sum_probs=64.8

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHH-cCCeEE-EEcCCC-CcH--HHHHh-----CCCceecChhhHhhcCCCEEEEecCchh
Q 044593           32 LKIAVIG-FGNFGQFLAKAFAR-HHHTLL-VHSRSD-HSP--AVRQQ-----LNAPFFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~-~G~~V~-~~dr~~-~~~--~~a~~-----~g~~~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      +||+|+| +|.||..+++.+.+ .+++++ ++|++. ...  .....     .|+..+++++++. ..+|+||.++|+..
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~-~~~DvVIdfT~p~~   80 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVE-TDPDVLIDFTTPEG   80 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhc-CCCCEEEECCChHH
Confidence            6999999 69999999999986 467764 578543 221  11111     3555667887774 67999999999998


Q ss_pred             HHHHHhhccccccCCc-cEEEEcCCCCchHHHHHHhh
Q 044593          101 TQSVLKSIPFQRLKRS-TLFVDVLSVKEFPRNLFLKY  136 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~-~iVvd~~SvK~~~~~~l~~~  136 (335)
                      ..+.+....    +.| .+|+-+.+......+.+.+.
T Consensus        81 ~~~~~~~al----~~g~~vVigttg~~~e~~~~l~~a  113 (266)
T TIGR00036        81 VLNHLKFAL----EHGVRLVVGTTGFSEEDKQELADL  113 (266)
T ss_pred             HHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHHH
Confidence            877776652    233 34444433333334444443

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.71  E-value=4.3e-05  Score=64.06  Aligned_cols=65  Identities=20%  Similarity=0.320  Sum_probs=46.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC-------C--CceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL-------N--APFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~-------g--~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |||+|||+ |.+|+++|..|...+.  ++.++|++++..+ .+.++       +  .....+..+.+ ++||+||++.-
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~~aDivvitag   78 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEAL-KDADIVVITAG   78 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGG-TTESEEEETTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccc-ccccEEEEecc
Confidence            79999999 9999999999999875  8999999975332 22221       1  11222333344 79999999873

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.70  E-value=0.00011  Score=68.46  Aligned_cols=76  Identities=16%  Similarity=0.242  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.|||.|. +|..+|..|.+.|..|+++++..              .++.+.+ .+||+||.|++....   +..
T Consensus       156 l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~-~~ADIVIsAvg~p~~---i~~  217 (286)
T PRK14175        156 LEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYL-KDADVIVSAVGKPGL---VTK  217 (286)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHH-hhCCEEEECCCCCcc---cCH
Confidence            4678999999977 99999999999999999998653              2345556 799999999987542   221


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                         ..+++|++|+|+++.
T Consensus       218 ---~~vk~gavVIDvGi~  232 (286)
T PRK14175        218 ---DVVKEGAVIIDVGNT  232 (286)
T ss_pred             ---HHcCCCcEEEEcCCC
Confidence               347789999999875

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.70  E-value=0.00012  Score=71.47  Aligned_cols=92  Identities=25%  Similarity=0.367  Sum_probs=66.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCc-HHHHHhCCCce--ecChhhHhhcCCCEEEEecCchh---H
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHS-PAVRQQLNAPF--FADLNDLCELHPDVVLLSTSILS---T  101 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~-~~~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~---~  101 (335)
                      -+..++.|||+|-||...|+.|.++|. +|++.+|+.+. .+++.+.|..+  .+++.+.+ .++|+||.||....   .
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l-~~~DvVissTsa~~~ii~  254 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEAL-AEADVVISSTSAPHPIIT  254 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhh-hhCCEEEEecCCCccccC
Confidence            467899999999999999999999994 89999999865 46788888543  34555556 79999999986553   1


Q ss_pred             HHHHhhccccccCCccEEEEcC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      .+-+.....  -++.-+++|++
T Consensus       255 ~~~ve~a~~--~r~~~livDia  274 (414)
T COG0373         255 REMVERALK--IRKRLLIVDIA  274 (414)
T ss_pred             HHHHHHHHh--cccCeEEEEec
Confidence            233333211  12235889986

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.67  E-value=0.00018  Score=68.88  Aligned_cols=91  Identities=19%  Similarity=0.250  Sum_probs=64.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHH-cC-CeEEEEcCCCCcHH-HHHh----CCCc--eecChhhHhhcCCCEEEEecCch
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFAR-HH-HTLLVHSRSDHSPA-VRQQ----LNAP--FFADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~-~G-~~V~~~dr~~~~~~-~a~~----~g~~--~~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      ...++|+|||+|.+|.+.+.++.. .+ .+|.+|+|+++..+ .+.+    .|+.  ...+.++++ .++|+||.|||..
T Consensus       130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al-~~aDiVi~aT~s~  208 (330)
T PRK08291        130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAV-AGADIIVTTTPSE  208 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHH-ccCCEEEEeeCCC
Confidence            345799999999999999999885 45 48999999987543 2332    2554  356777777 7899999999976


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .  .++..   ..+++++.|..+++-
T Consensus       209 ~--p~i~~---~~l~~g~~v~~vg~d  229 (330)
T PRK08291        209 E--PILKA---EWLHPGLHVTAMGSD  229 (330)
T ss_pred             C--cEecH---HHcCCCceEEeeCCC
Confidence            4  22222   135677777776653

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.65  E-value=0.00021  Score=68.77  Aligned_cols=89  Identities=17%  Similarity=0.234  Sum_probs=61.3

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHc-CCeEE-EEcCCCCcHH-HHHhC----CC-c-eec--ChhhHhhcCCCEEEEecCch
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARH-HHTLL-VHSRSDHSPA-VRQQL----NA-P-FFA--DLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~-G~~V~-~~dr~~~~~~-~a~~~----g~-~-~~~--~~~~~~~~~aDvVIlavp~~   99 (335)
                      |||+|||+ |.+|..+++.|.+. ++++. +++++...-+ .....    +. . ...  +..++. .++|+||+|+|..
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~DvVf~alP~~   79 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIA-EDADVVFLALPHG   79 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhh-cCCCEEEECCCch
Confidence            68999997 99999999999876 46776 5465432111 11111    11 1 122  344554 5899999999999


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ...++...+.    ..|+.|+|+++-
T Consensus        80 ~s~~~~~~~~----~~G~~VIDlS~~  101 (346)
T TIGR01850        80 VSAELAPELL----AAGVKVIDLSAD  101 (346)
T ss_pred             HHHHHHHHHH----hCCCEEEeCChh
Confidence            8888887763    367899999865

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.63  E-value=0.00025  Score=71.21  Aligned_cols=89  Identities=18%  Similarity=0.207  Sum_probs=66.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-ecC--------------------------hhh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-FAD--------------------------LND   83 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-~~~--------------------------~~~   83 (335)
                      ..|+.|+|+|.+|...+..++..|..|+++|++++..+.++.+|... ..+                          ..+
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e  243 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA  243 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999998888788777653 101                          122


Q ss_pred             HhhcCCCEEEEec-----Cch--hHHHHHhhccccccCCccEEEEcCCC
Q 044593           84 LCELHPDVVLLST-----SIL--STQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        84 ~~~~~aDvVIlav-----p~~--~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .+ +++|+||-|+     |..  .+++.+     ..+++|.+|+|++.-
T Consensus       244 ~~-~~~DIVI~TalipG~~aP~Lit~emv-----~~MKpGsvIVDlA~d  286 (511)
T TIGR00561       244 QA-KEVDIIITTALIPGKPAPKLITEEMV-----DSMKAGSVIVDLAAE  286 (511)
T ss_pred             Hh-CCCCEEEECcccCCCCCCeeehHHHH-----hhCCCCCEEEEeeeC
Confidence            23 6899999988     332  233333     346799999999743

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.57  E-value=0.00022  Score=77.05  Aligned_cols=90  Identities=19%  Similarity=0.182  Sum_probs=62.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcC-Ce-------------EEEEcCCCCcHHH-HHhC-CC---ce-ecChhhHhh--c
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHH-HT-------------LLVHSRSDHSPAV-RQQL-NA---PF-FADLNDLCE--L   87 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G-~~-------------V~~~dr~~~~~~~-a~~~-g~---~~-~~~~~~~~~--~   87 (335)
                      +++||+|||+|.||...+..|.+.. ++             |++.|++.+..+. +... ++   .. ..+.+++..  .
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            4679999999999999999998753 33             8889999865543 3333 43   22 445555431  5


Q ss_pred             CCCEEEEecCchhHHHHHhhccccccCCccEEEEcC
Q 044593           88 HPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus        88 ~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      ++|+||+|+|......+++..    ++.|.-+++.+
T Consensus       648 ~~DaVIsalP~~~H~~VAkaA----ieaGkHvv~ek  679 (1042)
T PLN02819        648 QVDVVISLLPASCHAVVAKAC----IELKKHLVTAS  679 (1042)
T ss_pred             CCCEEEECCCchhhHHHHHHH----HHcCCCEEECc
Confidence            799999999998766666654    33455555554

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.57  E-value=0.00027  Score=56.59  Aligned_cols=91  Identities=14%  Similarity=0.170  Sum_probs=62.1

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee----cChhhH---hhcCCCEEEEecCchhHHHHHh
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF----ADLNDL---CELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~----~~~~~~---~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      |.|+|+|.+|..++..|.+.+.+|+++|++++..+.+.+.|+...    ++.+.+   -..++|.+|++++.+...-.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~   80 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA   80 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence            679999999999999999977799999999988888888886531    222221   1268999999999886443332


Q ss_pred             hccccccCCccEEEEcCC
Q 044593          107 SIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~S  124 (335)
                      .......+...+++-+.+
T Consensus        81 ~~~r~~~~~~~ii~~~~~   98 (116)
T PF02254_consen   81 LLARELNPDIRIIARVND   98 (116)
T ss_dssp             HHHHHHTTTSEEEEEESS
T ss_pred             HHHHHHCCCCeEEEEECC
Confidence            221122333456665544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.56  E-value=0.00023  Score=66.43  Aligned_cols=118  Identities=18%  Similarity=0.174  Sum_probs=75.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCC---C-ceecChhhHhh-cCCCEEEEecCchhHH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLN---A-PFFADLNDLCE-LHPDVVLLSTSILSTQ  102 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g---~-~~~~~~~~~~~-~~aDvVIlavp~~~~~  102 (335)
                      +..++.|+|+|-.+.+++..|++.|. +|++++|+.+.. +++...+   . .......++.. .++|+||-|||.....
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~  204 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAG  204 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCC
Confidence            46889999999999999999999995 899999998654 3333332   1 11111222210 2589999999987643


Q ss_pred             HHHh-hccccccCCccEEEEcC--CCCchHHHHHHhhCCCCCceEeccccC
Q 044593          103 SVLK-SIPFQRLKRSTLFVDVL--SVKEFPRNLFLKYLPQDFDILCTHPMF  150 (335)
Q Consensus       103 ~vl~-~l~~~~l~~~~iVvd~~--SvK~~~~~~l~~~l~~~~~~v~~HPma  150 (335)
                      ..-. -+....++++.++.|+-  ...++.++..++   .+..++.+..|.
T Consensus       205 ~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~A~~---~G~~~idGl~Ml  252 (283)
T COG0169         205 PEGDSPVPAELLPKGAIVYDVVYNPLETPLLREARA---QGAKTIDGLGML  252 (283)
T ss_pred             CCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHHHHH---cCCeEECcHHHH
Confidence            3111 11113477889999984  334555555544   234466666665

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.55  E-value=0.00048  Score=65.06  Aligned_cols=87  Identities=20%  Similarity=0.305  Sum_probs=57.1

Q ss_pred             EEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHH-HHHhC-------C-Cce--ecChhhHhhcCCCEEEEecCchh
Q 044593           34 IAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPA-VRQQL-------N-APF--FADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~-~a~~~-------g-~~~--~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      |+|||+|.+|+++|..+...|  .+++++|++++..+ .+.++       . ...  ..+.++ + ++||+||++.....
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~-l-~~aDiVIitag~p~   78 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYAD-A-ADADIVVITAGAPR   78 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHH-h-CCCCEEEEcCCCCC
Confidence            689999999999999999988  58999999886543 12211       1 111  233444 4 79999999886421


Q ss_pred             ----------------HHHHHhhccccccCCccEEEEcCC
Q 044593          101 ----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 ----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                                      +.++.+.+. . ..++.+|+.+++
T Consensus        79 ~~~~~R~~l~~~n~~i~~~~~~~i~-~-~~p~~~viv~sN  116 (300)
T cd00300          79 KPGETRLDLINRNAPILRSVITNLK-K-YGPDAIILVVSN  116 (300)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH-H-hCCCeEEEEccC
Confidence                            334444453 2 336667776653

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.54  E-value=0.00012  Score=63.41  Aligned_cols=67  Identities=25%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-----hCCCceecChhhHhhcCCCEEEEecCch
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-----QLNAPFFADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-----~~g~~~~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      |||+||| .|..|+.|+.-..++||+|+++-||+.......     +..+..-+...+.+ .+.|+||.+....
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l-~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDL-AGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhh-cCCceEEEeccCC
Confidence            7999999 599999999999999999999999987654211     11221122223444 6899999987654

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.53  E-value=0.0003  Score=67.65  Aligned_cols=94  Identities=15%  Similarity=0.109  Sum_probs=67.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc-C-CeEEEEcCCCCcHH-HH---HhCCC--ceecChhhHhhcCCCEEEEecCchhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH-H-HTLLVHSRSDHSPA-VR---QQLNA--PFFADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~-G-~~V~~~dr~~~~~~-~a---~~~g~--~~~~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      ...+++|||+|..|.+.+.++..- . .+|.+|+|+++..+ .+   .+.++  ....+.++++ .++|+|+.|||....
T Consensus       128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av-~~ADIIvtaT~S~~~  206 (346)
T PRK07589        128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAV-EGADIITTVTADKTN  206 (346)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHH-hcCCEEEEecCCCCC
Confidence            457899999999999998887763 3 38999999987543 22   22344  3457788888 899999999985443


Q ss_pred             HHHHhhccccccCCccEEEEcCCCCc
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                      ..+++.   ..+++|+.|.-++|-+.
T Consensus       207 ~Pvl~~---~~lkpG~hV~aIGs~~p  229 (346)
T PRK07589        207 ATILTD---DMVEPGMHINAVGGDCP  229 (346)
T ss_pred             CceecH---HHcCCCcEEEecCCCCC
Confidence            234432   35789999888887654

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.53  E-value=0.00048  Score=65.45  Aligned_cols=93  Identities=15%  Similarity=0.185  Sum_probs=68.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-C-CeEEEEcCCCCcHH-H---HHhCCCce--ecChhhHhhcCCCEEEEecCchh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-H-HTLLVHSRSDHSPA-V---RQQLNAPF--FADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G-~~V~~~dr~~~~~~-~---a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ....+++|||+|..|.+.+.++... . .+|.+|+|+++..+ .   .++.++..  ..+.++++ .++|+|+.||+...
T Consensus       126 ~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av-~~ADIV~taT~s~~  204 (315)
T PRK06823        126 QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVA-HAANLIVTTTPSRE  204 (315)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHh-cCCCEEEEecCCCC
Confidence            3467899999999999999998764 2 38999999987643 2   23334443  56778887 89999999998654


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCc
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                        .+++.   ..+++|+.|.-+++-+.
T Consensus       205 --P~~~~---~~l~~G~hi~~iGs~~p  226 (315)
T PRK06823        205 --PLLQA---EDIQPGTHITAVGADSP  226 (315)
T ss_pred             --ceeCH---HHcCCCcEEEecCCCCc
Confidence              33321   35789999999987644

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.52  E-value=0.00018  Score=70.81  Aligned_cols=72  Identities=17%  Similarity=0.400  Sum_probs=55.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCc-HHHHHhCC-Cc--eecChhhHhhcCCCEEEEecCchh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHS-PAVRQQLN-AP--FFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~-~~~a~~~g-~~--~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ....+||.|||+|.||..++..|...|. +|++++|+.+. ...+.+.+ ..  ...++.+.+ .++|+||.||+...
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l-~~aDiVI~aT~a~~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLI-KKADIIIAAVNVLE  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHh-ccCCEEEECcCCCC
Confidence            3467899999999999999999999995 79999999764 34555554 32  224445555 78999999998765

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.51  E-value=0.00038  Score=70.07  Aligned_cols=94  Identities=18%  Similarity=0.263  Sum_probs=68.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-cCh---------------hh-------H-h
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-ADL---------------ND-------L-C   85 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-~~~---------------~~-------~-~   85 (335)
                      ...||.|+|+|.+|...+..++..|.+|+++|++++..+.++++|.... .+.               .+       . .
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~  243 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA  243 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence            4689999999999999999999999999999999999888999988622 100               01       1 1


Q ss_pred             h--cCCCEEEEecCchh--HHHH-HhhccccccCCccEEEEcCC
Q 044593           86 E--LHPDVVLLSTSILS--TQSV-LKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        86 ~--~~aDvVIlavp~~~--~~~v-l~~l~~~~l~~~~iVvd~~S  124 (335)
                      .  .++|+||-|+....  ...+ .++.- ..+++|.+|+|++.
T Consensus       244 ~~~~gaDVVIetag~pg~~aP~lit~~~v-~~mkpGgvIVdvg~  286 (509)
T PRK09424        244 EQAKEVDIIITTALIPGKPAPKLITAEMV-ASMKPGSVIVDLAA  286 (509)
T ss_pred             hccCCCCEEEECCCCCcccCcchHHHHHH-HhcCCCCEEEEEcc
Confidence            0  36999999986432  1122 23331 34678999999864

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.50  E-value=0.00066  Score=51.76  Aligned_cols=65  Identities=17%  Similarity=0.304  Sum_probs=49.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ...++++|+|.|.+|..++..+.+. +.+|++|||                           |++|.|++......-- .
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------------di~i~~~~~~~~~~~~-~   72 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------------DILVTATPAGVPVLEE-A   72 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------------CEEEEcCCCCCCchHH-H
Confidence            4567999999999999999999998 568999988                           8899999876532110 1


Q ss_pred             ccccccCCccEEEEcC
Q 044593          108 IPFQRLKRSTLFVDVL  123 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~  123 (335)
                      +  ..++++.+|+|++
T Consensus        73 ~--~~~~~~~~v~~~a   86 (86)
T cd05191          73 T--AKINEGAVVIDLA   86 (86)
T ss_pred             H--HhcCCCCEEEecC
Confidence            2  2356788999863

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.50  E-value=0.00065  Score=56.87  Aligned_cols=78  Identities=19%  Similarity=0.260  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      +..+++|.|+| .+..|..++..|.+.|..|+.++++..              ++.+.+ ++||+||.+++....     
T Consensus        25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~--------------~l~~~v-~~ADIVvsAtg~~~~-----   84 (140)
T cd05212          25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI--------------QLQSKV-HDADVVVVGSPKPEK-----   84 (140)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc--------------CHHHHH-hhCCEEEEecCCCCc-----
Confidence            34688999999 689999999999999999999986543              334556 799999999986632     


Q ss_pred             hccccccCCccEEEEcCCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK  126 (335)
                       +....+++|++|+|++..+
T Consensus        85 -i~~~~ikpGa~Vidvg~~~  103 (140)
T cd05212          85 -VPTEWIKPGATVINCSPTK  103 (140)
T ss_pred             -cCHHHcCCCCEEEEcCCCc
Confidence             3235689999999998654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PLN02602 lactate dehydrogenase

Probab=97.49  E-value=0.00062  Score=65.62  Aligned_cols=64  Identities=17%  Similarity=0.279  Sum_probs=46.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC-------C-Ccee--cChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL-------N-APFF--ADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~-------g-~~~~--~~~~~~~~~~aDvVIlavp   97 (335)
                      +||+|||+|.+|+++|..+...|.  ++.++|++++..+ .+.++       + ....  .+.++ + ++||+||++.-
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~-~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-T-AGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-h-CCCCEEEECCC
Confidence            699999999999999999998875  7999999886432 22221       1 1222  34455 4 79999999853

>PRK11579 putative oxidoreductase; Provisional

Probab=97.49  E-value=0.0005  Score=66.05  Aligned_cols=76  Identities=16%  Similarity=0.222  Sum_probs=54.2

Q ss_pred             CCeEEEEcccHHHHH-HHHHHHHc-CCeEE-EEcCCCCcHHHHHhC-CCceecChhhHhh-cCCCEEEEecCchhHHHHH
Q 044593           31 SLKIAVIGFGNFGQF-LAKAFARH-HHTLL-VHSRSDHSPAVRQQL-NAPFFADLNDLCE-LHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        31 ~~kI~IIG~G~mG~s-iA~~L~~~-G~~V~-~~dr~~~~~~~a~~~-g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~vl  105 (335)
                      .+||||||+|.||.. .+..+... +++++ ++|++++...  ... +...+++.++++. .+.|+|++|||...-.++.
T Consensus         4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~   81 (346)
T PRK11579          4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA   81 (346)
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence            479999999999984 56666654 57775 6788865432  233 4456788888872 3689999999998766655


Q ss_pred             hhc
Q 044593          106 KSI  108 (335)
Q Consensus       106 ~~l  108 (335)
                      ...
T Consensus        82 ~~a   84 (346)
T PRK11579         82 KAA   84 (346)
T ss_pred             HHH
Confidence            543

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.47  E-value=0.00045  Score=65.28  Aligned_cols=93  Identities=12%  Similarity=0.020  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CC-eEEEEcCCCCcHH-HHHh----CCC--ceecChhhHhhcCCCEEEEecCch
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HH-TLLVHSRSDHSPA-VRQQ----LNA--PFFADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~-~V~~~dr~~~~~~-~a~~----~g~--~~~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      ....+++|||+|..|.+.+.++... .. +|.+|+|+++..+ .+.+    .|+  ....+.++++ .+||+|+.||+..
T Consensus       115 ~da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav-~~aDIV~taT~s~  193 (301)
T PRK06407        115 KNVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAAL-RDADTITSITNSD  193 (301)
T ss_pred             cCCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHH-hcCCEEEEecCCC
Confidence            3567899999999999999998874 33 8999999987643 2222    254  3457788888 8999999999966


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCCc
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                      .  .++.   ...+++|+.|.-+++-+.
T Consensus       194 ~--P~~~---~~~l~pg~hV~aiGs~~p  216 (301)
T PRK06407        194 T--PIFN---RKYLGDEYHVNLAGSNYP  216 (301)
T ss_pred             C--cEec---HHHcCCCceEEecCCCCC
Confidence            4  2332   134678888888887543

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.44  E-value=0.00053  Score=64.13  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.|||.|. .|..++..|.+.|..|+++++...              ++.+.+ .++|+||.||+...   .+. 
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~--------------~L~~~~-~~aDIvI~AtG~~~---~v~-  217 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ--------------NLPELV-KQADIIVGAVGKPE---LIK-  217 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch--------------hHHHHh-ccCCEEEEccCCCC---cCC-
Confidence            4678999999987 999999999999999999987322              234445 78999999996333   221 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...++++++|+|++..
T Consensus       218 --~~~lk~gavViDvg~n  233 (283)
T PRK14192        218 --KDWIKQGAVVVDAGFH  233 (283)
T ss_pred             --HHHcCCCCEEEEEEEe
Confidence              2457899999999743

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.42  E-value=0.0004  Score=64.79  Aligned_cols=76  Identities=21%  Similarity=0.218  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcccHH-HHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGNF-GQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~m-G~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|+|||.|.+ |.-++..|.+.|..|+++....              .++.+.+ +++|+||.|++...   ++. 
T Consensus       156 l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------~~l~~~~-~~ADIVV~avG~~~---~i~-  216 (285)
T PRK14189        156 LRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------RDLAAHT-RQADIVVAAVGKRN---VLT-  216 (285)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------CCHHHHh-hhCCEEEEcCCCcC---ccC-
Confidence            35789999998776 9999999999999999876432              2445566 79999999999543   222 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++..
T Consensus       217 --~~~ik~gavVIDVGin  232 (285)
T PRK14189        217 --ADMVKPGATVIDVGMN  232 (285)
T ss_pred             --HHHcCCCCEEEEcccc
Confidence              2468899999999854

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.41  E-value=0.0005  Score=65.90  Aligned_cols=90  Identities=14%  Similarity=0.128  Sum_probs=60.2

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCC---eEEEEcCCCCcHHHHHhCCCc-eecChh-hHhhcCCCEEEEecCchhHHHH
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHH---TLLVHSRSDHSPAVRQQLNAP-FFADLN-DLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~dr~~~~~~~a~~~g~~-~~~~~~-~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      ++||+||| .|..|.-+.+.|.+.||   ++....++...-+...-.|.. ...+.. ... .++|+||+|+|.....++
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~-~~vDvVf~A~g~g~s~~~   79 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDF-SGVDIALFSAGGSVSKKY   79 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHH-cCCCEEEECCChHHHHHH
Confidence            47999999 69999999999999877   445554443221111111211 112222 223 689999999999988888


Q ss_pred             HhhccccccCCccEEEEcCCC
Q 044593          105 LKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ...+    ++.|..|+|.++-
T Consensus        80 ~~~~----~~~G~~VIDlS~~   96 (334)
T PRK14874         80 APKA----AAAGAVVIDNSSA   96 (334)
T ss_pred             HHHH----HhCCCEEEECCch
Confidence            8766    3467899999863

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.41  E-value=0.0011  Score=56.64  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=53.2

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.|||- +.+|..++..|.+.|..|+.++...+              ++.+.. +++|+||.|+.....      
T Consensus        34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~--------------~l~~~~-~~ADIVVsa~G~~~~------   92 (160)
T PF02882_consen   34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK--------------NLQEIT-RRADIVVSAVGKPNL------   92 (160)
T ss_dssp             TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS--------------SHHHHH-TTSSEEEE-SSSTT-------
T ss_pred             CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC--------------ccccee-eeccEEeeeeccccc------
Confidence            46889999995 57999999999999999999876643              334555 789999999986543      


Q ss_pred             ccccccCCccEEEEcCCCC
Q 044593          108 IPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK  126 (335)
                      +....+++|++|+|++...
T Consensus        93 i~~~~ik~gavVIDvG~~~  111 (160)
T PF02882_consen   93 IKADWIKPGAVVIDVGINY  111 (160)
T ss_dssp             B-GGGS-TTEEEEE--CEE
T ss_pred             cccccccCCcEEEecCCcc
Confidence            2235689999999998653

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.39  E-value=0.00018  Score=67.80  Aligned_cols=63  Identities=27%  Similarity=0.395  Sum_probs=44.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC---------CCceec--ChhhHhhcCCCEEEEec
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL---------NAPFFA--DLNDLCELHPDVVLLST   96 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~---------g~~~~~--~~~~~~~~~aDvVIlav   96 (335)
                      +||+|||+|.+|+++|..|...+.  ++.++|++++..+ .+.++         ......  +.++ + +++|+||++.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~-~-~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYED-L-KGADIVVITA   77 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhh-h-cCCCEEEEeC
Confidence            699999999999999999977663  8999999954332 22221         111222  2344 4 7999999987

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.39  E-value=0.00097  Score=63.22  Aligned_cols=64  Identities=23%  Similarity=0.392  Sum_probs=45.4

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCC--CcHH-HHH-------hCCC--c--eecChhhHhhcCCCEEEE
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSD--HSPA-VRQ-------QLNA--P--FFADLNDLCELHPDVVLL   94 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~--~~~~-~a~-------~~g~--~--~~~~~~~~~~~~aDvVIl   94 (335)
                      |||+|||+ |.+|..++..|...|+  +|+++|+++  +..+ .+.       ..+.  .  ...+.++ + .++|+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l-~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-V-AGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-h-CCCCEEEE
Confidence            79999997 9999999999999986  599999965  2221 010       1121  1  2234454 4 89999999


Q ss_pred             ecC
Q 044593           95 STS   97 (335)
Q Consensus        95 avp   97 (335)
                      |..
T Consensus        79 tag   81 (309)
T cd05294          79 TAG   81 (309)
T ss_pred             ecC
Confidence            985

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK15076 alpha-galactosidase; Provisional

Probab=97.39  E-value=0.00053  Score=67.97  Aligned_cols=68  Identities=13%  Similarity=0.040  Sum_probs=47.6

Q ss_pred             CCeEEEEcccHHHHHHHH--HHH--H--cCCeEEEEcCCCCcHHHHH--------hCC----CceecChhhHhhcCCCEE
Q 044593           31 SLKIAVIGFGNFGQFLAK--AFA--R--HHHTLLVHSRSDHSPAVRQ--------QLN----APFFADLNDLCELHPDVV   92 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~--~L~--~--~G~~V~~~dr~~~~~~~a~--------~~g----~~~~~~~~~~~~~~aDvV   92 (335)
                      ++||+|||.|.||.+.+.  .+.  .  .+.+|+++|++++..+.+.        ..+    +..++|..+.+ ++||+|
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal-~dADfV   79 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREAL-QGADYV   79 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHh-CCCCEE
Confidence            379999999999976655  443  1  2468999999986654221        122    22456766766 899999


Q ss_pred             EEecCch
Q 044593           93 LLSTSIL   99 (335)
Q Consensus        93 Ilavp~~   99 (335)
                      |.+.-..
T Consensus        80 v~ti~vg   86 (431)
T PRK15076         80 INAIQVG   86 (431)
T ss_pred             eEeeeeC
Confidence            9988765

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.38  E-value=0.00066  Score=59.62  Aligned_cols=93  Identities=17%  Similarity=0.172  Sum_probs=64.6

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhCCCcee--cC----hhhHhhcCCCEEEEecCch
Q 044593           28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQLNAPFF--AD----LNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~g~~~~--~~----~~~~~~~~aDvVIlavp~~   99 (335)
                      +..+++|.||| ...+|.-+|..|.+.|..|+++|.+.-... ......-..+  .+    +.+.+ ++||+||.|++..
T Consensus        59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~-~~ADIVIsAvG~~  137 (197)
T cd01079          59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCL-SQSDVVITGVPSP  137 (197)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHh-hhCCEEEEccCCC
Confidence            35689999999 678899999999999999999986542211 0000001111  12    45666 8999999999866


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK  126 (335)
                      ...     +....+++|++|+|++..+
T Consensus       138 ~~~-----i~~d~ik~GavVIDVGi~~  159 (197)
T cd01079         138 NYK-----VPTELLKDGAICINFASIK  159 (197)
T ss_pred             CCc-----cCHHHcCCCcEEEEcCCCc
Confidence            541     2234688999999998664

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.38  E-value=0.00058  Score=70.55  Aligned_cols=72  Identities=14%  Similarity=0.290  Sum_probs=58.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecChhhHh---hcCCCEEEEecCchhHH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADLNDLC---ELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~~~~~---~~~aDvVIlavp~~~~~  102 (335)
                      .++|.|+|+|.+|..+++.|.+.|++++++|.|++..+.+++.|...    .++.+-+-   .++||.+|++++.+...
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n  478 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDT  478 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence            57899999999999999999999999999999999888888888742    22322221   16899999999988654

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.37  E-value=0.0049  Score=59.57  Aligned_cols=183  Identities=18%  Similarity=0.203  Sum_probs=107.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-H--HHhC--CC--------------------ceecChhhH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-V--RQQL--NA--------------------PFFADLNDL   84 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~--a~~~--g~--------------------~~~~~~~~~   84 (335)
                      |.+|.|+|.|..+-.+|..+++.+. +|-++.|.....+ .  +.+.  +.                    ..+.+.+++
T Consensus         1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i   80 (429)
T PF10100_consen    1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI   80 (429)
T ss_pred             CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence            4589999999999999999998764 7888888653322 1  1111  11                    023455565


Q ss_pred             hhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCc--hHHHHHHhhCCCCCceEeccccCCCCCcccccCC-
Q 044593           85 CELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKE--FPRNLFLKYLPQDFDILCTHPMFGPESAKSSWEN-  161 (335)
Q Consensus        85 ~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~--~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g-  161 (335)
                      . .+-|.+|+|||.++..+|+++|....++.=..|+=++.+-+  -.++.+-.....++.+|+.--=.|...-.   .+ 
T Consensus        81 ~-g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~---d~~  156 (429)
T PF10100_consen   81 E-GEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWS---DGE  156 (429)
T ss_pred             c-ccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceec---cCC
Confidence            5 67899999999999999999996444443334444443322  22333333334456666654333333210   11 


Q ss_pred             Cc-ceeccc-----ccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHh--hhhHHHH
Q 044593          162 LP-FMYDKV-----RIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGS--QFVTHTM  217 (335)
Q Consensus       162 ~~-~i~~~~-----~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~--s~lph~l  217 (335)
                      .+ -+++..     .+++...+...+.++..+++.+|-.+..|+..-|-+.-..+  -|-|.++
T Consensus       157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfm  220 (429)
T PF10100_consen  157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFM  220 (429)
T ss_pred             CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhh
Confidence            01 111111     12333333456788999999999999999866555433222  2455555

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.37  E-value=0.00026  Score=61.05  Aligned_cols=93  Identities=17%  Similarity=0.203  Sum_probs=59.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce--e------------------------cChhh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF--F------------------------ADLND   83 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~--~------------------------~~~~~   83 (335)
                      ...||.|+|.|..|..-+..+...|++|+.+|.+++..+.....+...  .                        ..+.+
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~   98 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE   98 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence            458999999999999999999999999999999877665555544321  1                        01223


Q ss_pred             HhhcCCCEEEEecC--chhHHHHHhhccccccCCccEEEEcC
Q 044593           84 LCELHPDVVLLSTS--ILSTQSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus        84 ~~~~~aDvVIlavp--~~~~~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      .+ ..+|+||.++-  ......++.+-....++++.+|+|++
T Consensus        99 ~i-~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   99 FI-APADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HH-HH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HH-hhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            33 67999998553  33333333221113467999999995

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.37  E-value=0.00031  Score=70.51  Aligned_cols=86  Identities=17%  Similarity=0.284  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhCCCce--ecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQLNAPF--FADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      ...++++|+|+|.+|.+++..|.+.|++|++++|+++..+ .+...+...  ..+..+ + .++|+||.|||....  +.
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l-~~~DiVInatP~g~~--~~  405 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-L-HRIDIIINCLPPSVT--IP  405 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-c-CCCCEEEEcCCCCCc--ch
Confidence            4567999999999999999999999999999999876543 333333221  122222 3 679999999998752  11


Q ss_pred             hhccccccCCccEEEEcCCC
Q 044593          106 KSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .     .+.  .+|+|+...
T Consensus       406 ~-----~l~--~~v~D~~Y~  418 (477)
T PRK09310        406 K-----AFP--PCVVDINTL  418 (477)
T ss_pred             h-----HHh--hhEEeccCC
Confidence            1     122  388898654

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.37  E-value=0.00086  Score=63.93  Aligned_cols=90  Identities=18%  Similarity=0.235  Sum_probs=63.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec---Ch--hhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA---DL--NDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~---~~--~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ..+.+|+|+|+|-+|..-.+..+..|.+|+++|+++++.+.++++|....-   +.  .+.+.+.+|+||.+++...+..
T Consensus       165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~~~~  244 (339)
T COG1064         165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGPATLEP  244 (339)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCChhhHHH
Confidence            347899999999999888888888999999999999999999999875321   11  1111123899998888444455


Q ss_pred             HHhhccccccCCccEEEEcC
Q 044593          104 VLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~  123 (335)
                      .++.+     +++..++-++
T Consensus       245 ~l~~l-----~~~G~~v~vG  259 (339)
T COG1064         245 SLKAL-----RRGGTLVLVG  259 (339)
T ss_pred             HHHHH-----hcCCEEEEEC
Confidence            55444     3444544444

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.36  E-value=0.00067  Score=64.66  Aligned_cols=89  Identities=19%  Similarity=0.177  Sum_probs=67.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc-CC-eEEEEcCCCCcHHH-H---HhC-C--CceecChhhHhhcCCCEEEEecCchh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH-HH-TLLVHSRSDHSPAV-R---QQL-N--APFFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~-G~-~V~~~dr~~~~~~~-a---~~~-g--~~~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      .-..++|||+|..+.....++..- +. +|.+|+|+++..+. +   .+. +  +....+.++++ ++||+|+.|||...
T Consensus       129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av-~~aDiIvt~T~s~~  207 (330)
T COG2423         129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAV-EGADIVVTATPSTE  207 (330)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHh-hcCCEEEEecCCCC
Confidence            356899999999999999999874 33 89999999976542 2   222 3  24567778888 89999999999887


Q ss_pred             HHHHHhhccccccCCccEEEEcCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                        .+++   ...+++|+.|.-+++
T Consensus       208 --Pil~---~~~l~~G~hI~aiGa  226 (330)
T COG2423         208 --PVLK---AEWLKPGTHINAIGA  226 (330)
T ss_pred             --Ceec---HhhcCCCcEEEecCC
Confidence              3332   245789999998886

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.36  E-value=0.0016  Score=58.96  Aligned_cols=89  Identities=13%  Similarity=0.186  Sum_probs=62.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC---eEEEEcCC----CCc--------HHHHHhCCCc-eecChhhHhhcCCCEE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH---TLLVHSRS----DHS--------PAVRQQLNAP-FFADLNDLCELHPDVV   92 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~---~V~~~dr~----~~~--------~~~a~~~g~~-~~~~~~~~~~~~aDvV   92 (335)
                      .+.+||.|+|+|.+|..++..|...|.   +|+++||+    .+.        .+.+++.+.. ...++.+.+ .++|+|
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l-~~~dvl  101 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEAL-KGADVF  101 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHH-hcCCEE
Confidence            456799999999999999999999996   59999998    332        2233433211 112554555 789999


Q ss_pred             EEecCchhH-HHHHhhccccccCCccEEEEcC
Q 044593           93 LLSTSILST-QSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus        93 Ilavp~~~~-~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      |-++|.... .++++.+     .++.+|++++
T Consensus       102 IgaT~~G~~~~~~l~~m-----~~~~ivf~ls  128 (226)
T cd05311         102 IGVSRPGVVKKEMIKKM-----AKDPIVFALA  128 (226)
T ss_pred             EeCCCCCCCCHHHHHhh-----CCCCEEEEeC
Confidence            999985543 3455444     3667888876

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.36  E-value=0.00046  Score=64.81  Aligned_cols=94  Identities=14%  Similarity=0.177  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCC---CcH-HHHHhC---C--Cce----ecC---hhhHhhcCCCE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSD---HSP-AVRQQL---N--APF----FAD---LNDLCELHPDV   91 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~---~~~-~~a~~~---g--~~~----~~~---~~~~~~~~aDv   91 (335)
                      .+.+++.|+|+|.+|.+++..|.+.|++ |++++|++   +.. +.+.+.   +  +..    ..+   ..+.+ ..+|+
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-~~~Di  202 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEI-ASSDI  202 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhh-ccCCE
Confidence            3467899999999999999999999985 99999996   222 222221   1  111    111   12233 57899


Q ss_pred             EEEecCchhHHHHHh-hc-cccccCCccEEEEcC
Q 044593           92 VLLSTSILSTQSVLK-SI-PFQRLKRSTLFVDVL  123 (335)
Q Consensus        92 VIlavp~~~~~~vl~-~l-~~~~l~~~~iVvd~~  123 (335)
                      ||.|||.......-. -+ ....++++.+|.|+.
T Consensus       203 lINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v  236 (289)
T PRK12548        203 LVNATLVGMKPNDGETNIKDTSVFRKDLVVADTV  236 (289)
T ss_pred             EEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEec
Confidence            999999775321000 01 012366788999985

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.35  E-value=0.001  Score=59.22  Aligned_cols=80  Identities=10%  Similarity=0.065  Sum_probs=57.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-H-HHHHhCCCceec-Ch-hhHhhcCCCEEEEecCchhHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-P-AVRQQLNAPFFA-DL-NDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~-~~a~~~g~~~~~-~~-~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ...+++|.|||.|.+|...+..|.+.|++|++++++... . +.+....+.... .. .+.+ .++|+||.||.......
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l-~~adlViaaT~d~elN~   85 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDI-VDAFLVIAATNDPRVNE   85 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhc-CCceEEEEcCCCHHHHH
Confidence            356789999999999999999999999999999876532 2 323222232211 11 1223 68999999999998877


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      .+...
T Consensus        86 ~i~~~   90 (202)
T PRK06718         86 QVKED   90 (202)
T ss_pred             HHHHH
Confidence            76655

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.32  E-value=0.00028  Score=68.78  Aligned_cols=86  Identities=23%  Similarity=0.305  Sum_probs=58.0

Q ss_pred             EEEEcccHHHHHHHHHHHHcC-C-eEEEEcCCCCcHHHHHh--C--CCc----eecC---hhhHhhcCCCEEEEecCchh
Q 044593           34 IAVIGFGNFGQFLAKAFARHH-H-TLLVHSRSDHSPAVRQQ--L--NAP----FFAD---LNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G-~-~V~~~dr~~~~~~~a~~--~--g~~----~~~~---~~~~~~~~aDvVIlavp~~~  100 (335)
                      |+|+|+|.+|+.++..|.+.+ + +|++.||+.+..+...+  .  .+.    ...+   +.+++ +++|+||.|+|+..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~-~~~dvVin~~gp~~   79 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELL-RGCDVVINCAGPFF   79 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHH-TTSSEEEE-SSGGG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHH-hcCCEEEECCccch
Confidence            789999999999999999886 4 89999999877543432  2  221    1222   34556 79999999999886


Q ss_pred             HHHHHhhccccccCCccEEEEcCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...+++..    ++.|+-.+|++.
T Consensus        80 ~~~v~~~~----i~~g~~yvD~~~   99 (386)
T PF03435_consen   80 GEPVARAC----IEAGVHYVDTSY   99 (386)
T ss_dssp             HHHHHHHH----HHHT-EEEESS-
T ss_pred             hHHHHHHH----HHhCCCeeccch
Confidence            66666554    346677888543

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=97.30  E-value=0.00048  Score=64.09  Aligned_cols=114  Identities=14%  Similarity=0.182  Sum_probs=70.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHH---H
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSV---L  105 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v---l  105 (335)
                      ..++.|+|+|..|.+++.+|.+.|. +|++++|+++.. +.+...+.....+..  . ..+|+||-|||.......   .
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~--~-~~~dlvINaTp~Gm~~~~~~~~  198 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLG--G-IEADILVNVTPIGMAGGPEADK  198 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcc--c-ccCCEEEECCccccCCCCcccc
Confidence            3589999999999999999999997 699999998654 334444432211111  2 468999999997643110   0


Q ss_pred             hhccccccCCccEEEEcCC--CCchHHHHHHhhCCCCCceEeccccC
Q 044593          106 KSIPFQRLKRSTLFVDVLS--VKEFPRNLFLKYLPQDFDILCTHPMF  150 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~S--vK~~~~~~l~~~l~~~~~~v~~HPma  150 (335)
                      ..+....++++.+|.|+.-  -.+..++..++   .+...+.+..|.
T Consensus       199 ~pi~~~~l~~~~~v~D~vY~P~~T~ll~~A~~---~G~~~i~Gl~ML  242 (272)
T PRK12550        199 LAFPEAEIDAASVVFDVVALPAETPLIRYARA---RGKTVITGAEVI  242 (272)
T ss_pred             CCCCHHHcCCCCEEEEeecCCccCHHHHHHHH---CcCeEeCCHHHH
Confidence            0121234677889999852  22333343332   344555444443

>PRK10206 putative oxidoreductase; Provisional

Probab=97.29  E-value=0.00068  Score=65.19  Aligned_cols=78  Identities=17%  Similarity=0.172  Sum_probs=54.5

Q ss_pred             CCeEEEEcccHHHHH-HHHHHHH--cCCeE-EEEcCCCCcHHHHHhCC-CceecChhhHhh-cCCCEEEEecCchhHHHH
Q 044593           31 SLKIAVIGFGNFGQF-LAKAFAR--HHHTL-LVHSRSDHSPAVRQQLN-APFFADLNDLCE-LHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        31 ~~kI~IIG~G~mG~s-iA~~L~~--~G~~V-~~~dr~~~~~~~a~~~g-~~~~~~~~~~~~-~~aDvVIlavp~~~~~~v  104 (335)
                      +.||||||+|.++.. .+..+..  .+++| .++|++++..+.+.+.+ +..+++.++++. .+.|+|++|+|...-.++
T Consensus         1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~   80 (344)
T PRK10206          1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY   80 (344)
T ss_pred             CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence            358999999998763 3454533  25676 46899876555555555 456778888872 368999999999876665


Q ss_pred             Hhhc
Q 044593          105 LKSI  108 (335)
Q Consensus       105 l~~l  108 (335)
                      ....
T Consensus        81 ~~~a   84 (344)
T PRK10206         81 AKRA   84 (344)
T ss_pred             HHHH
Confidence            5543

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.27  E-value=0.001  Score=63.81  Aligned_cols=90  Identities=17%  Similarity=0.207  Sum_probs=57.2

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCC---eEEEEcCCCCcHHHHHhCCC--cee-cChhhHhhcCCCEEEEecCchhHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHH---TLLVHSRSDHSPAVRQQLNA--PFF-ADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~dr~~~~~~~a~~~g~--~~~-~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      +++||+|+| .|.+|.-+.+.|.+.+|   ++..+......-+.....|.  ... .+..+ . +++|++|+|+|.....
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~-~~vD~vFla~p~~~s~   80 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-F-SQVQLAFFAAGAAVSR   80 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-h-cCCCEEEEcCCHHHHH
Confidence            458999999 59999999999998776   33333222111110111121  111 12223 3 6899999999987777


Q ss_pred             HHHhhccccccCCccEEEEcCCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .+...+    .+.|..|+|.++-
T Consensus        81 ~~v~~~----~~~G~~VIDlS~~   99 (336)
T PRK05671         81 SFAEKA----RAAGCSVIDLSGA   99 (336)
T ss_pred             HHHHHH----HHCCCeEEECchh
Confidence            766665    2468899999864

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.27  E-value=0.0027  Score=60.51  Aligned_cols=67  Identities=21%  Similarity=0.189  Sum_probs=45.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCCCc--H-HHHHhC---------CCceecChhhHhhcCC
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSDHS--P-AVRQQL---------NAPFFADLNDLCELHP   89 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~~~--~-~~a~~~---------g~~~~~~~~~~~~~~a   89 (335)
                      +..||+|||+ |.+|+++|..|...|.       ++.++|+++..  . ..+.++         +.....+..+.+ ++|
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~da   80 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF-KDV   80 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh-CCC
Confidence            4579999998 9999999999998874       79999996521  2 122221         111222333444 799


Q ss_pred             CEEEEecC
Q 044593           90 DVVLLSTS   97 (335)
Q Consensus        90 DvVIlavp   97 (335)
                      |+||++.-
T Consensus        81 DvVVitAG   88 (323)
T TIGR01759        81 DAALLVGA   88 (323)
T ss_pred             CEEEEeCC
Confidence            99999764

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.26  E-value=0.00093  Score=64.28  Aligned_cols=89  Identities=17%  Similarity=0.127  Sum_probs=59.4

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCC---eEEEE--cCCCCcHHHHHhCCC--ceecChhhHhhcCCCEEEEecCchhH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHH---TLLVH--SRSDHSPAVRQQLNA--PFFADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~--dr~~~~~~~a~~~g~--~~~~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      ..+||+||| .|..|.-+.+.|.+.+|   ++..+  .++....  ....|.  .......+.+ .++|+||+|+|....
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~--~~~~~~~~~v~~~~~~~~-~~~D~vf~a~p~~~s   82 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKK--VTFEGRDYTVEELTEDSF-DGVDIALFSAGGSIS   82 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCe--eeecCceeEEEeCCHHHH-cCCCEEEECCCcHHH
Confidence            467999999 69999999999998777   34333  3333211  111222  1111112334 689999999999988


Q ss_pred             HHHHhhccccccCCccEEEEcCCC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .++...+.    ..|+.|+|.++-
T Consensus        83 ~~~~~~~~----~~g~~VIDlS~~  102 (344)
T PLN02383         83 KKFGPIAV----DKGAVVVDNSSA  102 (344)
T ss_pred             HHHHHHHH----hCCCEEEECCch
Confidence            88887652    368899999864

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.25  E-value=0.00098  Score=64.99  Aligned_cols=90  Identities=18%  Similarity=0.210  Sum_probs=61.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHhCC-------CceecChh-hHhhcCCCEEEEecCch
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQLN-------APFFADLN-DLCELHPDVVLLSTSIL   99 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~~~g-------~~~~~~~~-~~~~~~aDvVIlavp~~   99 (335)
                      ..+||+|+| .|.+|.-+.+.|.+. +++|..+.++...-+......       .....+.+ +.. +++|+||+|+|..
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~-~~~DvVf~Alp~~  115 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF-SDVDAVFCCLPHG  115 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh-cCCCEEEEcCCHH
Confidence            567999999 599999999999988 568887765533221111111       11111222 113 6899999999998


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ...++...+     ..++.|+|+++-
T Consensus       116 ~s~~i~~~~-----~~g~~VIDlSs~  136 (381)
T PLN02968        116 TTQEIIKAL-----PKDLKIVDLSAD  136 (381)
T ss_pred             HHHHHHHHH-----hCCCEEEEcCch
Confidence            877777765     256899999864

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.25  E-value=0.0011  Score=67.87  Aligned_cols=71  Identities=14%  Similarity=0.088  Sum_probs=56.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecChhhH---hhcCCCEEEEecCchhH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADLNDL---CELHPDVVLLSTSILST  101 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~~~~---~~~~aDvVIlavp~~~~  101 (335)
                      ..+|.|+|+|.+|..+++.|.+.|++|+++|.|++..+.+++.|...    .++.+.+   -.+++|.++++++.+..
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~  494 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYE  494 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHH
Confidence            47899999999999999999999999999999998888788887742    2232211   11689999999988653

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.25  E-value=0.00031  Score=66.69  Aligned_cols=94  Identities=20%  Similarity=0.217  Sum_probs=56.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc-CC-eEEEEcCCCCcHH----HHHhCCCc--eecChhhHhhcCCCEEEEecCchhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH-HH-TLLVHSRSDHSPA----VRQQLNAP--FFADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~-G~-~V~~~dr~~~~~~----~a~~~g~~--~~~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      ...+++|||+|..|.+-+.++... +. +|.+|+|+++..+    ...+.++.  ...+.++++ .+||+|+.|||....
T Consensus       127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av-~~aDii~taT~s~~~  205 (313)
T PF02423_consen  127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAV-RGADIIVTATPSTTP  205 (313)
T ss_dssp             T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHH-TTSSEEEE----SSE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhc-ccCCEEEEccCCCCC
Confidence            456899999999999999998763 43 8999999986542    22333544  456788888 899999999997762


Q ss_pred             HHHHhhccccccCCccEEEEcCCCCc
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                      ..++.   ...+++|+.|..+++-+.
T Consensus       206 ~P~~~---~~~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  206 APVFD---AEWLKPGTHINAIGSYTP  228 (313)
T ss_dssp             EESB----GGGS-TT-EEEE-S-SST
T ss_pred             Ccccc---HHHcCCCcEEEEecCCCC
Confidence            12222   245789999999987543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.24  E-value=0.0011  Score=62.93  Aligned_cols=89  Identities=20%  Similarity=0.310  Sum_probs=56.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhC--C---Cce--e-cC--hhhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQL--N---APF--F-AD--LNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~--g---~~~--~-~~--~~~~~~~~aDvVIlavp~   98 (335)
                      |||+|||+ |.+|+++|..|...|.  ++.++|++ .....+.++  +   ...  . .+  +.+.+ +++|+||++.-.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~-~daDivvitaG~   78 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKAL-KGADVVVIPAGV   78 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhc-CCCCEEEEeCCC
Confidence            69999999 9999999999998885  89999998 322112111  1   111  1 22  23444 899999997643


Q ss_pred             hh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           99 LS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..                +.++.+.+. + ..++++|+.+++
T Consensus        79 ~~k~g~tR~dll~~N~~i~~~i~~~i~-~-~~p~a~vivvtN  118 (310)
T cd01337          79 PRKPGMTRDDLFNINAGIVRDLATAVA-K-ACPKALILIISN  118 (310)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHH-H-hCCCeEEEEccC
Confidence            11                233444443 2 356778887764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.24  E-value=0.003  Score=56.81  Aligned_cols=91  Identities=19%  Similarity=0.123  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCC----------CcHHHHHhCC-Ccee-----cChhhHhhcCCC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSD----------HSPAVRQQLN-APFF-----ADLNDLCELHPD   90 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~----------~~~~~a~~~g-~~~~-----~~~~~~~~~~aD   90 (335)
                      ..++++|+|.|+|++|+.+|+.|.+.|.. |.+.|.+.          +..+...+.+ +...     .+.+++...+||
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D   99 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD   99 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence            45689999999999999999999999885 56678876          4444333332 2211     122333325799


Q ss_pred             EEEEecCchhH-HHHHhhccccccCCccEEEEcCC
Q 044593           91 VVLLSTSILST-QSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        91 vVIlavp~~~~-~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ++|-|.+.+.+ .+....+.      -.+|+..++
T Consensus       100 VlipaA~~~~i~~~~a~~l~------a~~V~e~AN  128 (217)
T cd05211         100 IFAPCALGNVIDLENAKKLK------AKVVAEGAN  128 (217)
T ss_pred             EEeeccccCccChhhHhhcC------ccEEEeCCC
Confidence            99999988764 34444442      236666554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=97.22  E-value=0.00039  Score=54.20  Aligned_cols=77  Identities=14%  Similarity=0.246  Sum_probs=56.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHH-HcCCeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcC--CCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFA-RHHHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELH--PDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~-~~G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--aDvVIlavp~~~~~~vl~  106 (335)
                      ..+|.|+|+|.+|..++..+. ..|+.+ .++|.+++... -.-.|+....+.+++. +.  .|+.|+|+|.....++..
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G-~~i~gipV~~~~~~l~-~~~~i~iaii~VP~~~a~~~~~   80 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG-KEIGGIPVYGSMDELE-EFIEIDIAIITVPAEAAQEVAD   80 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT-SEETTEEEESSHHHHH-HHCTTSEEEEES-HHHHHHHHH
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC-cEECCEEeeccHHHhh-hhhCCCEEEEEcCHHHHHHHHH
Confidence            458999999999999985554 457754 67788887442 1123666776777775 44  999999999999888887


Q ss_pred             hcc
Q 044593          107 SIP  109 (335)
Q Consensus       107 ~l~  109 (335)
                      ++.
T Consensus        81 ~~~   83 (96)
T PF02629_consen   81 ELV   83 (96)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.22  E-value=0.00053  Score=64.17  Aligned_cols=105  Identities=15%  Similarity=0.114  Sum_probs=65.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhC----CC--ceecCh---hhHhhcCCCEEEEecC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQL----NA--PFFADL---NDLCELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~----g~--~~~~~~---~~~~~~~aDvVIlavp   97 (335)
                      ...+++.|+|+|-.|.+++.+|.+.|. +|++++|+.+..+ .+...    +.  ....+.   .+.. ..+|+||-|||
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~-~~~divINaTp  203 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVI-AAADGVVNATP  203 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHH-hhcCEEEEcCC
Confidence            346789999999999999999999997 7999999976543 33322    11  011121   2233 57999999999


Q ss_pred             chhHHHHHhhccccccCCccEEEEcC--CCCchHHHHHH
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVL--SVKEFPRNLFL  134 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~--SvK~~~~~~l~  134 (335)
                      .......-..+....+.++.+|.|+.  ...+..++..+
T Consensus       204 ~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~  242 (283)
T PRK14027        204 MGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAAR  242 (283)
T ss_pred             CCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCHHHHHHH
Confidence            76421100001112356778999984  23334444444

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.20  E-value=0.0012  Score=68.53  Aligned_cols=72  Identities=14%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecChhhHh---hcCCCEEEEecCchhHH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADLNDLC---ELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~~~~~---~~~aDvVIlavp~~~~~  102 (335)
                      .++|.|+|+|.+|..+++.|.+.|++++++|.|++..+.+++.|...    .++.+-+-   .+++|.+|++++.+...
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n  478 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS  478 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence            57899999999999999999999999999999999888788888753    22332221   15899999999987643

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.19  E-value=0.0014  Score=62.43  Aligned_cols=66  Identities=23%  Similarity=0.188  Sum_probs=45.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCCCc--HH-HHHhC---------CCceecChhhHhhcCCC
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSDHS--PA-VRQQL---------NAPFFADLNDLCELHPD   90 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~~~--~~-~a~~~---------g~~~~~~~~~~~~~~aD   90 (335)
                      .+||+|||+ |.+|+++|..|...|.       ++.++|+++..  .+ .+.++         .+....+..+.+ ++||
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~daD   80 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAF-KDAD   80 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHh-CCCC
Confidence            569999998 9999999999998775       79999996432  11 11111         112223333444 7999


Q ss_pred             EEEEecC
Q 044593           91 VVLLSTS   97 (335)
Q Consensus        91 vVIlavp   97 (335)
                      +||++.-
T Consensus        81 ivvitaG   87 (322)
T cd01338          81 WALLVGA   87 (322)
T ss_pred             EEEEeCC
Confidence            9999764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.19  E-value=0.0012  Score=58.62  Aligned_cols=36  Identities=19%  Similarity=0.249  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      ....||.|||+|.+|+.++..|...|. +++++|.+.
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            456799999999999999999999997 899999883

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.19  E-value=0.0019  Score=55.08  Aligned_cols=78  Identities=13%  Similarity=0.094  Sum_probs=56.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCC-Ccee-cC--hhhHhhcCCCEEEEecCchhHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN-APFF-AD--LNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g-~~~~-~~--~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      +.++++|.|||.|.+|...++.|.+.|++|++++++  ..+...+++ +... ..  ..+ + .++|+||.||..+.+..
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~d-l-~~a~lViaaT~d~e~N~   85 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDD-I-KDAHLIYAATNQHAVNM   85 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhc-C-CCceEEEECCCCHHHHH
Confidence            456889999999999999999999999999999644  222233333 2211 11  122 3 68999999999998877


Q ss_pred             HHhhcc
Q 044593          104 VLKSIP  109 (335)
Q Consensus       104 vl~~l~  109 (335)
                      .+....
T Consensus        86 ~i~~~a   91 (157)
T PRK06719         86 MVKQAA   91 (157)
T ss_pred             HHHHHH
Confidence            776653

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.18  E-value=0.0015  Score=61.90  Aligned_cols=80  Identities=20%  Similarity=0.222  Sum_probs=57.5

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      ++||+||| .|..|.-+.+.|.++.. ++.....+... .      .   .+.++.. .++|++|+|+|.....++..++
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~------~---~~~~~~~-~~~DvvFlalp~~~s~~~~~~~   70 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-D------A---AARRELL-NAADVAILCLPDDAAREAVALI   70 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-c------c---cCchhhh-cCCCEEEECCCHHHHHHHHHHH
Confidence            67999999 69999999999988764 55444333221 1      1   1223344 6899999999999888888776


Q ss_pred             cccccCCccEEEEcCCC
Q 044593          109 PFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~Sv  125 (335)
                      .    +.|+.|+|.++-
T Consensus        71 ~----~~g~~VIDlSad   83 (313)
T PRK11863         71 D----NPATRVIDASTA   83 (313)
T ss_pred             H----hCCCEEEECChh
Confidence            3    368899999853

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.16  E-value=0.0013  Score=61.40  Aligned_cols=75  Identities=17%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.|||-|. +|..++..|.+.|..|+++.+..              .++.+.+ +++|+||.|++-...   +. 
T Consensus       157 l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~-~~ADIvi~avG~p~~---v~-  217 (285)
T PRK10792        157 TYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHV-RNADLLVVAVGKPGF---IP-  217 (285)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHH-hhCCEEEEcCCCccc---cc-
Confidence            3578999999776 99999999999999999987642              2345566 799999999954432   11 


Q ss_pred             ccccccCCccEEEEcCC
Q 044593          108 IPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~S  124 (335)
                        ...+++|++|+|++-
T Consensus       218 --~~~vk~gavVIDvGi  232 (285)
T PRK10792        218 --GEWIKPGAIVIDVGI  232 (285)
T ss_pred             --HHHcCCCcEEEEccc
Confidence              245789999999984

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.16  E-value=0.0012  Score=61.99  Aligned_cols=93  Identities=16%  Similarity=0.176  Sum_probs=59.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCC---c-HHHHHhCC----Cc-eecCh------hhHhhcCCCEEE
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDH---S-PAVRQQLN----AP-FFADL------NDLCELHPDVVL   93 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~---~-~~~a~~~g----~~-~~~~~------~~~~~~~aDvVI   93 (335)
                      ..+++.|+|+|..+.+++..|...|. +|++++|+++   . .+++...+    .. ...++      .+.. .++|+||
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~-~~aDivI  201 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEAL-ASADILT  201 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhc-ccCCEEE
Confidence            45789999999999999999999886 8999999964   2 22333222    11 11122      1223 5789999


Q ss_pred             EecCchhHHHHHhhc--cccccCCccEEEEcC
Q 044593           94 LSTSILSTQSVLKSI--PFQRLKRSTLFVDVL  123 (335)
Q Consensus        94 lavp~~~~~~vl~~l--~~~~l~~~~iVvd~~  123 (335)
                      .|||.......-..+  ....++++.+|.|+.
T Consensus       202 NaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v  233 (288)
T PRK12749        202 NGTKVGMKPLENESLVNDISLLHPGLLVTECV  233 (288)
T ss_pred             ECCCCCCCCCCCCCCCCcHHHCCCCCEEEEec
Confidence            999986532110101  012356788999985

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.15  E-value=0.0012  Score=62.55  Aligned_cols=63  Identities=17%  Similarity=0.354  Sum_probs=45.3

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC----------CCce-ecChhhHhhcCCCEEEEecC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL----------NAPF-FADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~----------g~~~-~~~~~~~~~~~aDvVIlavp   97 (335)
                      ||+|||+|.+|+++|..|...+.  ++.++|++++..+ .+.++          .+.. ..+.++ + ++||+||++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~-~-~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDD-C-ADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHH-h-CCCCEEEECCC
Confidence            79999999999999999998885  7999999876432 22221          1112 234444 4 79999999763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.13  E-value=0.00087  Score=62.72  Aligned_cols=70  Identities=13%  Similarity=0.025  Sum_probs=51.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCCC----ceec---ChhhHhhcCCCEEEEecCchh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLNA----PFFA---DLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g~----~~~~---~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ..+++.|||+|.+|.+++.+|.+.|. +|++++|+.+.. +.+...+.    ....   +..+.. .++|+||-|||...
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~-~~~DiVInaTp~g~  202 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIE-KAAEVLVSTVPADV  202 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcc-cCCCEEEECCCCCC
Confidence            46789999999999999999999997 799999997654 33333221    1111   222333 67999999999764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK05442 malate dehydrogenase; Provisional

Probab=97.12  E-value=0.0022  Score=61.20  Aligned_cols=67  Identities=24%  Similarity=0.204  Sum_probs=44.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCCCc--HH-HHHhC---------CCceecChhhHhhcCC
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSDHS--PA-VRQQL---------NAPFFADLNDLCELHP   89 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~~~--~~-~a~~~---------g~~~~~~~~~~~~~~a   89 (335)
                      +.+||+|||+ |.+|+++|..|...|.       ++.++|+++..  .+ .+.++         ......+..+.+ ++|
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~-~da   81 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAF-KDA   81 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHh-CCC
Confidence            4679999998 9999999999887663       79999996431  11 11111         122233333445 899


Q ss_pred             CEEEEecC
Q 044593           90 DVVLLSTS   97 (335)
Q Consensus        90 DvVIlavp   97 (335)
                      |+||++.-
T Consensus        82 DiVVitaG   89 (326)
T PRK05442         82 DVALLVGA   89 (326)
T ss_pred             CEEEEeCC
Confidence            99999764

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.10  E-value=0.0012  Score=61.62  Aligned_cols=76  Identities=18%  Similarity=0.180  Sum_probs=58.8

Q ss_pred             CCCCeEEEEccc-HHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFG-NFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G-~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.|||-| .+|..+|..|.+.|..|+++....              .++.+.+ ++||+||.|++....   +. 
T Consensus       155 l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~-~~ADIvV~AvG~p~~---i~-  215 (285)
T PRK14191        155 IKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYT-QNADIVCVGVGKPDL---IK-  215 (285)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHH-HhCCEEEEecCCCCc---CC-
Confidence            357899999987 999999999999999999885432              1234556 799999999975543   22 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++..
T Consensus       216 --~~~vk~GavVIDvGi~  231 (285)
T PRK14191        216 --ASMVKKGAVVVDIGIN  231 (285)
T ss_pred             --HHHcCCCcEEEEeecc
Confidence              2457899999999843

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.10  E-value=0.00067  Score=58.83  Aligned_cols=84  Identities=12%  Similarity=0.197  Sum_probs=57.1

Q ss_pred             cccCCCCCeEEEEcccHHHHHHHHHH--HHcCCeE-EEEcCCCCcHH-HHHhCCCceecChhhHhh-cCCCEEEEecCch
Q 044593           25 QYVKSTSLKIAVIGFGNFGQFLAKAF--ARHHHTL-LVHSRSDHSPA-VRQQLNAPFFADLNDLCE-LHPDVVLLSTSIL   99 (335)
Q Consensus        25 ~~~~~~~~kI~IIG~G~mG~siA~~L--~~~G~~V-~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~   99 (335)
                      .+...++-++.|||+|++|.+++.+-  .++|+++ .+||.+++..- .....-+...++++..+. .+.|+.|+|||..
T Consensus        78 ~Lg~~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~  157 (211)
T COG2344          78 LLGQDKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE  157 (211)
T ss_pred             HhCCCcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence            44556778999999999999998543  3567765 67899987442 111111112234444441 3799999999999


Q ss_pred             hHHHHHhhc
Q 044593          100 STQSVLKSI  108 (335)
Q Consensus       100 ~~~~vl~~l  108 (335)
                      ...++.+.+
T Consensus       158 ~AQ~vad~L  166 (211)
T COG2344         158 HAQEVADRL  166 (211)
T ss_pred             HHHHHHHHH
Confidence            888888777

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.09  E-value=0.0023  Score=63.52  Aligned_cols=94  Identities=17%  Similarity=0.156  Sum_probs=63.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--CCce----ecChhhH---hhcCCCEEEEecCchh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--NAPF----FADLNDL---CELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--g~~~----~~~~~~~---~~~~aDvVIlavp~~~  100 (335)
                      ..++|.|+|+|.+|..+++.|.+.|++|+++|++++..+.+.+.  ++..    .++...+   ...++|.||++++.+.
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~  309 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE  309 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence            46899999999999999999999999999999999876655543  3321    1222222   1168999999998775


Q ss_pred             HHHHHhhccccccCCccEEEEcCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..-....+. ..+....+|+-+.+
T Consensus       310 ~n~~~~~~~-~~~~~~~ii~~~~~  332 (453)
T PRK09496        310 ANILSSLLA-KRLGAKKVIALVNR  332 (453)
T ss_pred             HHHHHHHHH-HHhCCCeEEEEECC
Confidence            443333332 22344456655543

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.08  E-value=0.0019  Score=57.38  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS   63 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~   63 (335)
                      .+..||+|||+|.+|+.+|..|...|. +++++|.+
T Consensus        19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            456799999999999999999999998 79999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.08  E-value=0.0016  Score=61.80  Aligned_cols=92  Identities=20%  Similarity=0.243  Sum_probs=60.2

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCC-eEEEEcCCC-CcHHHHHh----CCCc---e-ecChhhHhhcCCCEEEEecCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHH-TLLVHSRSD-HSPAVRQQ----LNAP---F-FADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~dr~~-~~~~~a~~----~g~~---~-~~~~~~~~~~~aDvVIlavp~   98 (335)
                      +++||+||| .|--|.-+.+.|..... ++..+..+. ........    .|..   . .-+.+++...+||+||+|+|.
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh   80 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH   80 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence            368999999 69999999999988753 766655443 21111111    1221   1 112333321569999999999


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ....++..++    +.++..|+|+|.-
T Consensus        81 g~s~~~v~~l----~~~g~~VIDLSad  103 (349)
T COG0002          81 GVSAELVPEL----LEAGCKVIDLSAD  103 (349)
T ss_pred             hhHHHHHHHH----HhCCCeEEECCcc
Confidence            9988888776    3356779999753

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.07  E-value=0.0013  Score=63.03  Aligned_cols=90  Identities=19%  Similarity=0.287  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHc-C-CeEEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARH-H-HTLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~-G-~~V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      ...++|.|+|+ |.||+.+++.|... | .++++++|+++... .+.+.+.....++.+.+ .++|+||.++...... +
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l-~~aDiVv~~ts~~~~~-~  230 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEAL-PEADIVVWVASMPKGV-E  230 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHH-ccCCEEEECCcCCcCC-c
Confidence            45689999997 99999999999854 5 58999999876543 33333322223455666 7899999988653311 0


Q ss_pred             HhhccccccCCccEEEEcC
Q 044593          105 LKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~  123 (335)
                      +.   ...++++.+++|++
T Consensus       231 I~---~~~l~~~~~viDiA  246 (340)
T PRK14982        231 ID---PETLKKPCLMIDGG  246 (340)
T ss_pred             CC---HHHhCCCeEEEEec
Confidence            11   12356889999996

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=97.07  E-value=0.00063  Score=60.94  Aligned_cols=78  Identities=14%  Similarity=0.282  Sum_probs=51.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHH--HHcCCeEEE-EcCCCCcHHHHHhCCCc--eecChhhHhh-cCCCEEEEecCchhHHH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAF--ARHHHTLLV-HSRSDHSPAVRQQLNAP--FFADLNDLCE-LHPDVVLLSTSILSTQS  103 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L--~~~G~~V~~-~dr~~~~~~~a~~~g~~--~~~~~~~~~~-~~aDvVIlavp~~~~~~  103 (335)
                      ...+|+|||+|.+|..++..+  ...|+++++ +|++++...... .|+.  ...++.+++. .++|.|++|+|.....+
T Consensus        83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~  161 (213)
T PRK05472         83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAAQE  161 (213)
T ss_pred             CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHH
Confidence            457899999999999999864  345788764 688764332111 1221  2234455541 35999999999887766


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      +...+
T Consensus       162 i~~~l  166 (213)
T PRK05472        162 VADRL  166 (213)
T ss_pred             HHHHH
Confidence            55544

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.07  E-value=0.0043  Score=56.22  Aligned_cols=92  Identities=15%  Similarity=0.187  Sum_probs=58.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEE-EEcC----------CCCcHH-HHHhCCC-ce-----ecChhhHhhcCC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLL-VHSR----------SDHSPA-VRQQLNA-PF-----FADLNDLCELHP   89 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~-~~dr----------~~~~~~-~a~~~g~-~~-----~~~~~~~~~~~a   89 (335)
                      ..+.++|+|.|+|.+|+.+++.|.+.|.+|+ +.|.          |.+.+. ...+.|- ..     ..+.+++...+|
T Consensus        28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~~  107 (227)
T cd01076          28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELDC  107 (227)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeecc
Confidence            4578999999999999999999999999987 5566          322222 1222231 10     112233332579


Q ss_pred             CEEEEecCchhH-HHHHhhccccccCCccEEEEcCCC
Q 044593           90 DVVLLSTSILST-QSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        90 DvVIlavp~~~~-~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      |++|-|.+...+ .+.+..+.      -.+|+..++.
T Consensus       108 Dvlip~a~~~~i~~~~~~~l~------a~~I~egAN~  138 (227)
T cd01076         108 DILIPAALENQITADNADRIK------AKIIVEAANG  138 (227)
T ss_pred             cEEEecCccCccCHHHHhhce------eeEEEeCCCC
Confidence            999999987764 45555552      1356655443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.06  E-value=0.0022  Score=59.88  Aligned_cols=75  Identities=20%  Similarity=0.325  Sum_probs=58.5

Q ss_pred             CCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           30 TSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        30 ~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      .++++.|||-|. +|.-++..|.+.|..|+++....              .++.+.. ++||+||.|+.-..   .+.  
T Consensus       163 ~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~-~~ADIvv~AvG~p~---~i~--  222 (287)
T PRK14176        163 EGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYT-LDADILVVATGVKH---LIK--  222 (287)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHH-hhCCEEEEccCCcc---ccC--
Confidence            578999999776 99999999999999999987432              2345556 78999999876443   221  


Q ss_pred             cccccCCccEEEEcCCC
Q 044593          109 PFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~Sv  125 (335)
                       ...+++|++|+|++..
T Consensus       223 -~~~vk~gavVIDvGin  238 (287)
T PRK14176        223 -ADMVKEGAVIFDVGIT  238 (287)
T ss_pred             -HHHcCCCcEEEEeccc
Confidence             2458899999999864

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.06  E-value=0.0015  Score=63.74  Aligned_cols=92  Identities=16%  Similarity=0.225  Sum_probs=64.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc--CC-eEEEEcCCCCcHH-HHH----hC-C---CceecChhhHhhcCCCEEEEec
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH--HH-TLLVHSRSDHSPA-VRQ----QL-N---APFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~--G~-~V~~~dr~~~~~~-~a~----~~-g---~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      ....+++|||+|.+|.+...++...  .. +|.+|+|+++..+ .+.    .. |   +....+.++++ .+||+|+.||
T Consensus       153 ~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav-~~ADIVvtaT  231 (379)
T PRK06199        153 KDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVV-RGSDIVTYCN  231 (379)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHH-cCCCEEEEcc
Confidence            3457899999999999999999873  23 8999999987543 222    22 3   33457788888 8999999999


Q ss_pred             Cchh----HHHHHhhccccccCCccEEEEcCC
Q 044593           97 SILS----TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        97 p~~~----~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +...    ...++..   ..+++|+.|.-+++
T Consensus       232 ~s~~~~~s~~Pv~~~---~~lkpG~hv~~ig~  260 (379)
T PRK06199        232 SGETGDPSTYPYVKR---EWVKPGAFLLMPAA  260 (379)
T ss_pred             CCCCCCCCcCcEecH---HHcCCCcEEecCCc
Confidence            7532    1133321   34678988876665

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=97.04  E-value=0.0044  Score=61.78  Aligned_cols=85  Identities=13%  Similarity=0.092  Sum_probs=66.4

Q ss_pred             CCCeEEEEcc----cHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           30 TSLKIAVIGF----GNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        30 ~~~kI~IIG~----G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ...+|+|||.    |.+|..+.+.|.+.||  +|+.+++.....     .|+..+.++.++- ...|++|+++|...+.+
T Consensus         6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp-~~~Dlavi~vp~~~~~~   79 (447)
T TIGR02717         6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIP-DPVDLAVIVVPAKYVPQ   79 (447)
T ss_pred             CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCC-CCCCEEEEecCHHHHHH
Confidence            4578999998    8899999999999998  677666654322     3777888888886 67899999999999999


Q ss_pred             HHhhccccccCCccEEEEc
Q 044593          104 VLKSIPFQRLKRSTLFVDV  122 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~  122 (335)
                      +++++..  ..-+.+|+-.
T Consensus        80 ~l~e~~~--~gv~~~vi~s   96 (447)
T TIGR02717        80 VVEECGE--KGVKGAVVIT   96 (447)
T ss_pred             HHHHHHh--cCCCEEEEEC
Confidence            9998842  3344555533

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.03  E-value=0.0022  Score=61.57  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      .+..+|.|||+|.+|+.+|..|...|+ +++++|++.
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            356789999999999999999999998 899999885

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.03  E-value=0.0017  Score=51.25  Aligned_cols=88  Identities=13%  Similarity=0.084  Sum_probs=56.1

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-ecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-FADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      +.++.+|.|||.|.+|..=++.|.+.|.+|++++++.   . ..+..+.. ....++.+ .++|+||.|++.....+.+.
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~-~~~~~i~~~~~~~~~~l-~~~~lV~~at~d~~~n~~i~   78 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---E-FSEGLIQLIRREFEEDL-DGADLVFAATDDPELNEAIY   78 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---H-HHHTSCEEEESS-GGGC-TTESEEEE-SS-HHHHHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---h-hhhhHHHHHhhhHHHHH-hhheEEEecCCCHHHHHHHH
Confidence            3467899999999999999999999999999998875   1 11122221 11223334 78999999998877665554


Q ss_pred             hccccccCCccEEEEcCC
Q 044593          107 SIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~S  124 (335)
                      ...    +...+++++..
T Consensus        79 ~~a----~~~~i~vn~~D   92 (103)
T PF13241_consen   79 ADA----RARGILVNVVD   92 (103)
T ss_dssp             HHH----HHTTSEEEETT
T ss_pred             HHH----hhCCEEEEECC
Confidence            442    22335555543

>cd00704 MDH Malate dehydrogenase

Probab=97.03  E-value=0.0032  Score=60.04  Aligned_cols=64  Identities=19%  Similarity=0.169  Sum_probs=43.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCC--CcHH-HHHh---------CCCceecChhhHhhcCCCE
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSD--HSPA-VRQQ---------LNAPFFADLNDLCELHPDV   91 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~--~~~~-~a~~---------~g~~~~~~~~~~~~~~aDv   91 (335)
                      .||+|||+ |.+|+.++..|...|.       ++.++|+++  +..+ .+.+         .+.....+..+.+ ++||+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~-~~aDi   79 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAF-KDVDV   79 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHh-CCCCE
Confidence            38999998 9999999999998663       499999987  4321 0100         0112223344555 89999


Q ss_pred             EEEec
Q 044593           92 VLLST   96 (335)
Q Consensus        92 VIlav   96 (335)
                      ||++.
T Consensus        80 VVitA   84 (323)
T cd00704          80 AILVG   84 (323)
T ss_pred             EEEeC
Confidence            99876

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.01  E-value=0.0018  Score=62.03  Aligned_cols=91  Identities=13%  Similarity=0.184  Sum_probs=59.6

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCC---eEEEEcCCCC---cHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHH---TLLVHSRSDH---SPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~dr~~~---~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      +..+||+||| .|..|.-+.+.|.+..|   ++..+..+..   ... .....+.+. +.++....++|++|+|+|....
T Consensus         2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s   79 (336)
T PRK08040          2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGGKSVTVQ-DAAEFDWSQAQLAFFVAGREAS   79 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECCcceEEE-eCchhhccCCCEEEECCCHHHH
Confidence            3568999999 59999999999998544   5554432221   111 111112222 3333211579999999999988


Q ss_pred             HHHHhhccccccCCccEEEEcCCC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .++...+.    +.|+.|+|.++-
T Consensus        80 ~~~~~~~~----~~g~~VIDlS~~   99 (336)
T PRK08040         80 AAYAEEAT----NAGCLVIDSSGL   99 (336)
T ss_pred             HHHHHHHH----HCCCEEEECChH
Confidence            88877662    468899999864

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.00  E-value=0.0039  Score=62.61  Aligned_cols=68  Identities=15%  Similarity=0.139  Sum_probs=50.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCCceec--ChhhHhhcCCCEEEEec
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNAPFFA--DLNDLCELHPDVVLLST   96 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~~~~~--~~~~~~~~~aDvVIlav   96 (335)
                      +..++||.|+|+|..|.++|+.|.+.|++|+++|++.... +...+.|+....  +..+.+ .++|+||.+-
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~-~~~d~vV~Sp   82 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQL-DSFSLVVTSP   82 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHh-cCCCEEEeCC
Confidence            3456789999999999999999999999999999876433 223456876542  222334 6799999863

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=96.99  E-value=0.0078  Score=59.68  Aligned_cols=94  Identities=19%  Similarity=0.145  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHc-------CC--eEEEEcCCCCcHH-HHHhC---------CCceecChhhHhhcC
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARH-------HH--TLLVHSRSDHSPA-VRQQL---------NAPFFADLNDLCELH   88 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~-------G~--~V~~~dr~~~~~~-~a~~~---------g~~~~~~~~~~~~~~   88 (335)
                      .+.-||+|||+ |.+|+++|..|...       |.  +++++|++++..+ .+.++         .+....+..+.+ ++
T Consensus        98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~-kd  176 (444)
T PLN00112         98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVF-QD  176 (444)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHh-Cc
Confidence            34579999999 99999999999987       65  7899999987543 12211         222223333444 89


Q ss_pred             CCEEEEecCchh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           89 PDVVLLSTSILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        89 aDvVIlavp~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ||+||++.-...                +.++.+.+. .+..++.+|+-+++
T Consensus       177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~-~~a~p~~ivIVVsN  227 (444)
T PLN00112        177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALN-EVASRNVKVIVVGN  227 (444)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEcCC
Confidence            999999764311                233444442 22356777776653

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.98  E-value=0.0017  Score=61.50  Aligned_cols=65  Identities=12%  Similarity=0.175  Sum_probs=48.3

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp   97 (335)
                      |||.|+| .|.+|+.++..|.+.|++|.+.+|+++........++..    ..+   +.+++ .++|+||.++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al-~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSF-KGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHH-CCCCEEEECCC
Confidence            6899999 699999999999999999999999865433233345532    122   33445 78999998764

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=96.98  E-value=0.0033  Score=60.39  Aligned_cols=67  Identities=22%  Similarity=0.388  Sum_probs=53.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc--CCeE-EEEcCCCCc-HHHHHhCCCceecChhhHhhcCCCEEEEecCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH--HHTL-LVHSRSDHS-PAVRQQLNAPFFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~--G~~V-~~~dr~~~~-~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      ...||+|||+ .||...+.++.+.  ++++ .++|++++. .+.+.+.|+..+++.++++ .+.|++++++|.
T Consensus         2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell-~d~Di~~V~ipt   72 (343)
T TIGR01761         2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELP-DDIDIACVVVRS   72 (343)
T ss_pred             CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHh-cCCCEEEEEeCC
Confidence            3579999999 6899999999875  4676 467999865 4567778988888999998 778888888754

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.98  E-value=0.0044  Score=55.25  Aligned_cols=73  Identities=15%  Similarity=0.057  Sum_probs=52.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-H-HHHHhCCCcee---cChhhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-P-AVRQQLNAPFF---ADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~-~~a~~~g~~~~---~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ..+++|.|||.|.+|..-++.|.+.|.+|++++++... . +.+.+..+...   ....+ + .++|+||.||.......
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~d-l-~~~~lVi~at~d~~ln~   84 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADI-L-EGAFLVIAATDDEELNR   84 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHH-h-CCcEEEEECCCCHHHHH
Confidence            45779999999999999999999999999999987642 2 32333233321   12233 4 78999999998875543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.97  E-value=0.0024  Score=63.74  Aligned_cols=65  Identities=17%  Similarity=0.094  Sum_probs=48.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEe
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIla   95 (335)
                      .++||.|||+|..|.+.|..|.+.|++|+++|..+.......+.|+.......+.. .++|+||.+
T Consensus         8 ~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~-~~~d~vv~s   72 (460)
T PRK01390          8 AGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADW-SGFAALVLS   72 (460)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHH-cCCCEEEEC
Confidence            46789999999999999999999999999999775433334456775432112223 579998874

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.96  E-value=0.0027  Score=61.22  Aligned_cols=91  Identities=18%  Similarity=0.197  Sum_probs=60.4

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHh---C-----------CCcee-cChhhHhhcCCC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQ---L-----------NAPFF-ADLNDLCELHPD   90 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~---~-----------g~~~~-~~~~~~~~~~aD   90 (335)
                      |+++||+|+| .|.+|+.+.+.|.+... +++++.+++... +....   .           .+... .+.+. . .++|
T Consensus         1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~D   78 (349)
T PRK08664          1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-V-DDVD   78 (349)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-h-cCCC
Confidence            3468999998 89999999999987654 887774443221 10110   0           01111 23333 3 6899


Q ss_pred             EEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           91 VVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        91 vVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      +|+.|+|.....++.+.+.    ..|..++|.++.
T Consensus        79 vVf~a~p~~~s~~~~~~~~----~~G~~vIDls~~  109 (349)
T PRK08664         79 IVFSALPSDVAGEVEEEFA----KAGKPVFSNASA  109 (349)
T ss_pred             EEEEeCChhHHHHHHHHHH----HCCCEEEECCch
Confidence            9999999988777776552    367889999875

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.95  E-value=0.0031  Score=58.79  Aligned_cols=76  Identities=13%  Similarity=0.185  Sum_probs=60.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.||| ...+|.-++..|.+.|..|++++....              ++.+.. ++||+||.|+.-...   +. 
T Consensus       157 l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~--------------~l~~~~-~~ADIvIsAvGk~~~---i~-  217 (284)
T PRK14177        157 VTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ--------------NLPSIV-RQADIIVGAVGKPEF---IK-  217 (284)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC--------------CHHHHH-hhCCEEEEeCCCcCc---cC-
Confidence            4578999999 689999999999999999998875432              345556 799999999986543   22 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++..
T Consensus       218 --~~~ik~gavVIDvGin  233 (284)
T PRK14177        218 --ADWISEGAVLLDAGYN  233 (284)
T ss_pred             --HHHcCCCCEEEEecCc
Confidence              2468899999999864

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.95  E-value=0.0024  Score=54.98  Aligned_cols=62  Identities=24%  Similarity=0.251  Sum_probs=48.3

Q ss_pred             EEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecCh---hhHhhcCCCEEEEecCc
Q 044593           34 IAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADL---NDLCELHPDVVLLSTSI   98 (335)
Q Consensus        34 I~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~---~~~~~~~aDvVIlavp~   98 (335)
                      |.|+|. |.+|..++..|.+.|++|+++.|+++..+.  ..++..    ..+.   .+++ .++|.||.+++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al-~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAAL-KGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHH-TTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhh-hhcchhhhhhhh
Confidence            789995 999999999999999999999999886654  444432    2233   3444 799999999974

...

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.94  E-value=0.0025  Score=59.54  Aligned_cols=76  Identities=18%  Similarity=0.231  Sum_probs=59.6

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.||| ...+|.-++..|.+.|..|+++....              .++.+.. ++||+||.|+.-...   +. 
T Consensus       153 l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~-~~ADIvIsAvGkp~~---i~-  213 (287)
T PRK14173        153 LAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVT-RRADVLVVAVGRPHL---IT-  213 (287)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEecCCcCc---cC-
Confidence            4578999999 68999999999999999999886443              2345566 789999999986542   22 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ..++++|++|+|++..
T Consensus       214 --~~~vk~GavVIDVGin  229 (287)
T PRK14173        214 --PEMVRPGAVVVDVGIN  229 (287)
T ss_pred             --HHHcCCCCEEEEccCc
Confidence              2468899999999854

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=96.93  E-value=0.0015  Score=63.76  Aligned_cols=77  Identities=17%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             CeEEEEcccHHHH-HHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc---e---------------e--cChhhHh--hcC
Q 044593           32 LKIAVIGFGNFGQ-FLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP---F---------------F--ADLNDLC--ELH   88 (335)
Q Consensus        32 ~kI~IIG~G~mG~-siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~---~---------------~--~~~~~~~--~~~   88 (335)
                      |||.++|+|+||+ .++..|.+.|++|+++|+++...+...+.|.-   .               .  .+.+++.  ..+
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~   80 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE   80 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence            7999999999997 55888889999999999887766655554431   0               0  0112221  047


Q ss_pred             CCEEEEecCchhHHHHHhhc
Q 044593           89 PDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        89 aDvVIlavp~~~~~~vl~~l  108 (335)
                      +|+|+++|+......+...+
T Consensus        81 ~dlvt~~v~~~~~~s~~~~l  100 (381)
T PRK02318         81 ADLVTTAVGPNILPFIAPLI  100 (381)
T ss_pred             CCEEEeCCCcccchhHHHHH
Confidence            89999999887766655555

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=96.93  E-value=0.0033  Score=59.04  Aligned_cols=76  Identities=16%  Similarity=0.172  Sum_probs=59.7

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.||| ...+|.-++..|.+.|..|+++....              .++.+.+ +++|+||.|+.-.   .++  
T Consensus       165 l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T--------------~nl~~~~-~~ADIvv~AvGk~---~~i--  224 (299)
T PLN02516        165 IKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT--------------PDPESIV-READIVIAAAGQA---MMI--  224 (299)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEcCCCc---Ccc--
Confidence            4579999999 68899999999999999999886432              2345666 8999999998754   222  


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                       ....+++|++|+|++..
T Consensus       225 -~~~~vk~gavVIDvGin  241 (299)
T PLN02516        225 -KGDWIKPGAAVIDVGTN  241 (299)
T ss_pred             -CHHHcCCCCEEEEeecc
Confidence             23568899999999854

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.92  E-value=0.0025  Score=59.23  Aligned_cols=76  Identities=16%  Similarity=0.306  Sum_probs=59.9

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..++++.||| ...+|.-++..|.+.|..|+++....              .++.+.. ++||+||.|+.-...   +. 
T Consensus       156 l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~-~~ADIvIsAvGkp~~---i~-  216 (278)
T PRK14172        156 IEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVC-KKADILVVAIGRPKF---ID-  216 (278)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEcCCCcCc---cC-
Confidence            4578999999 68899999999999999999887542              2345566 789999999986543   22 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++-.
T Consensus       217 --~~~ik~gavVIDvGin  232 (278)
T PRK14172        217 --EEYVKEGAIVIDVGTS  232 (278)
T ss_pred             --HHHcCCCcEEEEeecc
Confidence              3468899999999743

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.92  E-value=0.0033  Score=58.57  Aligned_cols=76  Identities=16%  Similarity=0.290  Sum_probs=59.6

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      -.+++|.||| ...+|.-++..|.+.|..|+++....              .++.+.. ++||+||.|+.-...   +. 
T Consensus       154 l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~-~~ADIvI~AvG~p~~---i~-  214 (282)
T PRK14169        154 VAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLT-KEADILVVAVGVPHF---IG-  214 (282)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHH-hhCCEEEEccCCcCc---cC-
Confidence            3578999999 68899999999999999998885432              2345556 789999999986653   22 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++..
T Consensus       215 --~~~vk~GavVIDvGin  230 (282)
T PRK14169        215 --ADAVKPGAVVIDVGIS  230 (282)
T ss_pred             --HHHcCCCcEEEEeecc
Confidence              2468899999999854

>PTZ00325 malate dehydrogenase; Provisional

Probab=96.91  E-value=0.0019  Score=61.56  Aligned_cols=66  Identities=23%  Similarity=0.274  Sum_probs=44.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHh-------CCCceecCh---hhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHH--HTLLVHSRSDHSPAVRQQ-------LNAPFFADL---NDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G--~~V~~~dr~~~~~~~a~~-------~g~~~~~~~---~~~~~~~aDvVIlav   96 (335)
                      ++.||+|||+ |.+|+.+|..|...+  .++.++|++.... .+.+       ..+...++.   .+.+ +++|+||++.
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g-~a~Dl~~~~~~~~v~~~td~~~~~~~l-~gaDvVVita   84 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG-VAADLSHIDTPAKVTGYADGELWEKAL-RGADLVLICA   84 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc-cccchhhcCcCceEEEecCCCchHHHh-CCCCEEEECC
Confidence            5679999998 999999999998666  4899999943211 1111       111222221   3445 8999999876


Q ss_pred             C
Q 044593           97 S   97 (335)
Q Consensus        97 p   97 (335)
                      -
T Consensus        85 G   85 (321)
T PTZ00325         85 G   85 (321)
T ss_pred             C
Confidence            3

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.91  E-value=0.004  Score=58.82  Aligned_cols=78  Identities=17%  Similarity=0.196  Sum_probs=55.7

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      .||+|+| .|..|.-+.+.|....+ ++.....+..         .. ..+.+++. .++|++|+|+|.....++...+.
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-~~~~~~~~-~~~D~vFlalp~~~s~~~~~~~~   70 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-AAERAKLL-NAADVAILCLPDDAAREAVSLVD   70 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-cCCHhHhh-cCCCEEEECCCHHHHHHHHHHHH
Confidence            4899999 69999999999998753 5543322211         00 11334555 68999999999998888877662


Q ss_pred             ccccCCccEEEEcCC
Q 044593          110 FQRLKRSTLFVDVLS  124 (335)
Q Consensus       110 ~~~l~~~~iVvd~~S  124 (335)
                          ..|+.|+|.++
T Consensus        71 ----~~g~~VIDlSa   81 (310)
T TIGR01851        71 ----NPNTCIIDAST   81 (310)
T ss_pred             ----hCCCEEEECCh
Confidence                36889999985

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.90  E-value=0.0032  Score=58.74  Aligned_cols=76  Identities=13%  Similarity=0.229  Sum_probs=59.8

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.||| ...+|.-+|..|.+.|..|+++....              .++.+.+ ++||+||.|+.....   +. 
T Consensus       156 l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~-~~ADIvI~AvG~p~~---i~-  216 (284)
T PRK14190        156 ISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELT-KQADILIVAVGKPKL---IT-  216 (284)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHH-HhCCEEEEecCCCCc---CC-
Confidence            3578999999 78999999999999999999886432              2445566 799999999975542   22 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++..
T Consensus       217 --~~~ik~gavVIDvGi~  232 (284)
T PRK14190        217 --ADMVKEGAVVIDVGVN  232 (284)
T ss_pred             --HHHcCCCCEEEEeecc
Confidence              3468899999999754

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.90  E-value=0.0028  Score=59.49  Aligned_cols=76  Identities=18%  Similarity=0.183  Sum_probs=59.7

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.||| ...+|.-++..|.+.|..|+++....              .++.+.+ ++||+||.|+.-...   +. 
T Consensus       156 l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~-~~ADIvIsAvGkp~~---i~-  216 (297)
T PRK14186        156 IAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASIT-READILVAAAGRPNL---IG-  216 (297)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEccCCcCc---cC-
Confidence            4578999999 68899999999999999998885432              2345566 789999999985542   22 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ..++++|++|+|++..
T Consensus       217 --~~~ik~gavVIDvGin  232 (297)
T PRK14186        217 --AEMVKPGAVVVDVGIH  232 (297)
T ss_pred             --HHHcCCCCEEEEeccc
Confidence              3468899999999855

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=96.89  E-value=0.0024  Score=61.38  Aligned_cols=87  Identities=15%  Similarity=0.184  Sum_probs=57.7

Q ss_pred             eEEEEc-ccHHHHHHHHHHHHcCCe---EEEEcCCCCcHHHHHhCCCce-ecCh-hhHhhcCCCEEEEecCchhHHHHHh
Q 044593           33 KIAVIG-FGNFGQFLAKAFARHHHT---LLVHSRSDHSPAVRQQLNAPF-FADL-NDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        33 kI~IIG-~G~mG~siA~~L~~~G~~---V~~~dr~~~~~~~a~~~g~~~-~~~~-~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      ||+||| .|.+|..+.+.|.+.+|.   +..+.++...-+.....|... ..+. .+.. .++|+||+|+|.....++..
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~-~~~D~v~~a~g~~~s~~~a~   79 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESF-EGIDIALFSAGGSVSKEFAP   79 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHh-cCCCEEEECCCHHHHHHHHH
Confidence            689999 699999999999998875   334434332211111123211 1111 2223 68999999999998888877


Q ss_pred             hccccccCCccEEEEcCC
Q 044593          107 SIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~S  124 (335)
                      .+    ++.|..|+|.++
T Consensus        80 ~~----~~~G~~VID~ss   93 (339)
T TIGR01296        80 KA----AKCGAIVIDNTS   93 (339)
T ss_pred             HH----HHCCCEEEECCH
Confidence            65    346789999986

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.87  E-value=0.0035  Score=58.38  Aligned_cols=76  Identities=14%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      -.+++|.||| ...+|.-++..|.++|..|+++.....              ++.+.. ++||+||.|++-...   +. 
T Consensus       156 l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~--------------dl~~~~-k~ADIvIsAvGkp~~---i~-  216 (282)
T PRK14180        156 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT--------------DLKSHT-TKADILIVAVGKPNF---IT-  216 (282)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC--------------CHHHHh-hhcCEEEEccCCcCc---CC-
Confidence            3578999999 688999999999999999998865432              344555 789999999986543   22 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++..
T Consensus       217 --~~~vk~gavVIDvGin  232 (282)
T PRK14180        217 --ADMVKEGAVVIDVGIN  232 (282)
T ss_pred             --HHHcCCCcEEEEeccc
Confidence              2458899999999854

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.85  E-value=0.0033  Score=58.62  Aligned_cols=76  Identities=18%  Similarity=0.269  Sum_probs=59.8

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.||| ...+|.-++..|.+.|..|+++....              .++.+.+ ++||+||.|+.-...   +. 
T Consensus       155 l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~-~~ADIvI~AvG~~~~---i~-  215 (284)
T PRK14170        155 IEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVA-KEADILVVATGLAKF---VK-  215 (284)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEecCCcCc---cC-
Confidence            4578999999 68889999999999999999886432              2345566 799999999986543   22 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++..
T Consensus       216 --~~~vk~GavVIDvGin  231 (284)
T PRK14170        216 --KDYIKPGAIVIDVGMD  231 (284)
T ss_pred             --HHHcCCCCEEEEccCc
Confidence              2468899999999865

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.85  E-value=0.004  Score=58.31  Aligned_cols=75  Identities=20%  Similarity=0.317  Sum_probs=59.5

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      -.+++|.||| ...+|.-++..|.+.|..|+++....              .++.+.+ ++||+||.|+.-...   +  
T Consensus       158 l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~-~~ADIvVsAvGkp~~---i--  217 (294)
T PRK14187        158 LSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYC-SKADILVAAVGIPNF---V--  217 (294)
T ss_pred             CCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEccCCcCc---c--
Confidence            4578999999 68899999999999999999887543              2345566 799999999986543   2  


Q ss_pred             ccccccCCccEEEEcCC
Q 044593          108 IPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~S  124 (335)
                       ...++++|++|+|++-
T Consensus       218 -~~~~ik~gaiVIDVGi  233 (294)
T PRK14187        218 -KYSWIKKGAIVIDVGI  233 (294)
T ss_pred             -CHHHcCCCCEEEEecc
Confidence             2346889999999974

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=96.83  E-value=0.0011  Score=62.85  Aligned_cols=88  Identities=18%  Similarity=0.280  Sum_probs=56.0

Q ss_pred             eEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhC--C---Ccee--c-C--hhhHhhcCCCEEEEecCch
Q 044593           33 KIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQL--N---APFF--A-D--LNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        33 kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~--g---~~~~--~-~--~~~~~~~~aDvVIlavp~~   99 (335)
                      ||+|||+ |.+|+++|..|...++  ++.++|+++ ....+.++  +   ....  . +  +.+.+ +++|+||++.-..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~-~daDivvitaG~~   78 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAADLSHIPTAASVKGFSGEEGLENAL-KGADVVVIPAGVP   78 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEchhhcCCcCceEEEecCCCchHHHc-CCCCEEEEeCCCC
Confidence            7999999 9999999999988876  799999987 21111111  1   1111  1 1  23445 8999999977432


Q ss_pred             h----------------HHHHHhhccccccCCccEEEEcCC
Q 044593          100 S----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 ~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .                +.++.+.+. . ..++++|+.+++
T Consensus        79 ~~~g~~R~dll~~N~~I~~~i~~~i~-~-~~p~~iiivvsN  117 (312)
T TIGR01772        79 RKPGMTRDDLFNVNAGIVKDLVAAVA-E-SCPKAMILVITN  117 (312)
T ss_pred             CCCCccHHHHHHHhHHHHHHHHHHHH-H-hCCCeEEEEecC
Confidence            1                233444443 2 357777777764

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=96.82  E-value=0.0027  Score=62.89  Aligned_cols=70  Identities=16%  Similarity=0.200  Sum_probs=47.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc--------C--CeE-EEEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH--------H--HTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~--------G--~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp   97 (335)
                      +..||+|||+|.||+.++..|.++        |  .+| .++|++..........+...+++.++++. .+.|+|+.|++
T Consensus         2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg   81 (426)
T PRK06349          2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG   81 (426)
T ss_pred             CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence            457999999999999999888553        2  354 46688765432111123345677777762 35799999987


Q ss_pred             ch
Q 044593           98 IL   99 (335)
Q Consensus        98 ~~   99 (335)
                      ..
T Consensus        82 ~~   83 (426)
T PRK06349         82 GI   83 (426)
T ss_pred             Cc
Confidence            53

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.82  E-value=0.0034  Score=58.49  Aligned_cols=76  Identities=18%  Similarity=0.216  Sum_probs=59.6

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.||| ...+|.-++..|.+.|..|+++....              .++.+.. ++||+||.|+.-...   +. 
T Consensus       155 l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~-~~ADIvIsAvGkp~~---i~-  215 (282)
T PRK14166        155 LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYT-RQADLIIVAAGCVNL---LR-  215 (282)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEcCCCcCc---cC-
Confidence            4678999999 68899999999999999999887543              2345566 789999999986543   22 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++-.
T Consensus       216 --~~~vk~GavVIDvGin  231 (282)
T PRK14166        216 --SDMVKEGVIVVDVGIN  231 (282)
T ss_pred             --HHHcCCCCEEEEeccc
Confidence              2458899999999843

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.81  E-value=0.0039  Score=62.87  Aligned_cols=67  Identities=15%  Similarity=0.110  Sum_probs=51.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec--ChhhHhhcCCCEEEEecC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA--DLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~--~~~~~~~~~aDvVIlavp   97 (335)
                      .+++|.|+|+|..|.+.++.|...|++|+++|+++...+.+++.|+....  ...+.+ .++|+||.+..
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l-~~~D~VV~SpG   79 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQI-ADYALVVTSPG   79 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHh-hcCCEEEECCC
Confidence            45789999999999999999999999999999776555445667875432  222334 67999998653

>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]

Probab=96.81  E-value=0.056  Score=48.31  Aligned_cols=131  Identities=10%  Similarity=0.115  Sum_probs=86.0

Q ss_pred             CCceecChhhHhhcCCCEEEEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHHH-HHHhhCCCCCceEeccccCC
Q 044593           74 NAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRN-LFLKYLPQDFDILCTHPMFG  151 (335)
Q Consensus        74 g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~-~l~~~l~~~~~~v~~HPmaG  151 (335)
                      |+..++|..+++ +++|+||.=.|-.. -..+++.+. ..+++|++|++.|++.+.-.. .+++....+.++-+.||-+-
T Consensus       126 g~~vttddreav-edad~iitwlpkg~~qpdiikkfi-ddipegaivthactipttkf~kifed~gredlnvtsyhpg~v  203 (343)
T COG4074         126 GIVVTTDDREAV-EDADMIITWLPKGGVQPDIIKKFI-DDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYHPGTV  203 (343)
T ss_pred             eeEEecCcHhhh-cCCCeEEEeccCCCCCccHHHHHH-hcCCCCceEeeecccchHHHHHHHHHhCccccceeccCCCCC
Confidence            445667777887 89999999888664 345666663 567899999999987654333 33333335568889999888


Q ss_pred             CCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHH
Q 044593          152 PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTM  217 (335)
Q Consensus       152 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~l  217 (335)
                      |+.     +|+.++-+      .-.+++.++.+-++=+..-...+.+...--.-+.-++|.++..+
T Consensus       204 pem-----kgqvyiae------gyaseeavn~lyelg~karg~afk~pa~llgpvcdmcsavtaiv  258 (343)
T COG4074         204 PEM-----KGQVYIAE------GYASEEAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIV  258 (343)
T ss_pred             ccc-----cCcEEEec------ccccHHHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHH
Confidence            884     56644432      12345677777776665544567777665555566666665543

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.80  E-value=0.0044  Score=59.54  Aligned_cols=89  Identities=15%  Similarity=0.236  Sum_probs=59.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHH-cCCe---EEEEcCCCC---cHHHHHhCCCcee-cChhhHhhcCCCEEEEecCchh
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFAR-HHHT---LLVHSRSDH---SPAVRQQLNAPFF-ADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~-~G~~---V~~~dr~~~---~~~~a~~~g~~~~-~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      +.+||+||| .|..|.-+.+.|.+ ..++   +..+.....   ..... ...+... .+..++  .++|++|+|+|...
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~-~~~l~v~~~~~~~~--~~~Divf~a~~~~~   80 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFK-GREIIIQEAKINSF--EGVDIAFFSAGGEV   80 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeC-CcceEEEeCCHHHh--cCCCEEEECCChHH
Confidence            347999999 59999999999995 5666   544432221   11111 0112211 233333  68999999999998


Q ss_pred             HHHHHhhccccccCCccEEEEcCCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ..++...+    .+.|+.|+|.+|.
T Consensus        81 s~~~~~~~----~~~G~~VID~Ss~  101 (347)
T PRK06728         81 SRQFVNQA----VSSGAIVIDNTSE  101 (347)
T ss_pred             HHHHHHHH----HHCCCEEEECchh
Confidence            88877765    3468999999874

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=96.79  E-value=0.013  Score=55.01  Aligned_cols=88  Identities=10%  Similarity=0.078  Sum_probs=64.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCe-EEEEcCC--CCcHHHHHhCCCceecChhhHhhcC--CCEEEEecCchhHHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHT-LLVHSRS--DHSPAVRQQLNAPFFADLNDLCELH--PDVVLLSTSILSTQS  103 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~-V~~~dr~--~~~~~~a~~~g~~~~~~~~~~~~~~--aDvVIlavp~~~~~~  103 (335)
                      +..||.|.| .|.+|+.+...|.+.|++ |+.+++.  .+..     .|+..+.+..++. +.  .|++|+++|...+.+
T Consensus         7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v-----~G~~~y~sv~dlp-~~~~~DlAvi~vp~~~v~~   80 (291)
T PRK05678          7 KDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTV-----LGLPVFNTVAEAV-EATGANASVIYVPPPFAAD   80 (291)
T ss_pred             CCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeE-----eCeeccCCHHHHh-hccCCCEEEEEcCHHHHHH
Confidence            456899999 599999999999998886 3344544  2222     3777888888886 55  899999999999999


Q ss_pred             HHhhccccccCCccEEEEcCCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ++++...  ..-+..|+-.++.
T Consensus        81 ~l~e~~~--~gvk~avI~s~Gf  100 (291)
T PRK05678         81 AILEAID--AGIDLIVCITEGI  100 (291)
T ss_pred             HHHHHHH--CCCCEEEEECCCC
Confidence            9998742  2333445544444

>PLN00106 malate dehydrogenase

Probab=96.79  E-value=0.0022  Score=61.11  Aligned_cols=65  Identities=23%  Similarity=0.317  Sum_probs=45.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhC-------CCce---ecChhhHhhcCCCEEEEecC
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQL-------NAPF---FADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~-------g~~~---~~~~~~~~~~~aDvVIlavp   97 (335)
                      ..||+|||+ |.+|+++|..|...+.  ++.++|+++. ...+.++       .+..   .++..+.+ +++|+||++.-
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~-~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l-~~aDiVVitAG   95 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT-PGVAADVSHINTPAQVRGFLGDDQLGDAL-KGADLVIIPAG   95 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC-CeeEchhhhCCcCceEEEEeCCCCHHHHc-CCCCEEEEeCC
Confidence            469999998 9999999999997775  8999999872 1111111       1111   12334555 89999999763

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.79  E-value=0.0047  Score=61.72  Aligned_cols=66  Identities=17%  Similarity=0.177  Sum_probs=49.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-----HHHHhCCCceec--ChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-----AVRQQLNAPFFA--DLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-----~~a~~~g~~~~~--~~~~~~~~~aDvVIlav   96 (335)
                      .++||+|+|+|..|.++|+.|.+.|++|+++|+++...     +...+.|+....  ...+.+ .++|+||++.
T Consensus        13 ~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~~~dlVV~Sp   85 (458)
T PRK01710         13 KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKL-DGFDVIFKTP   85 (458)
T ss_pred             cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHh-ccCCEEEECC
Confidence            35789999999999999999999999999999875311     235566775432  222334 6899999874

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.78  E-value=0.0039  Score=58.05  Aligned_cols=76  Identities=14%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             CCCCeEEEEccc-HHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFG-NFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G-~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.|||-+ .+|.-+|..|.++|..|+++....              .++.+.+ ++||+||.|+.-...   +. 
T Consensus       155 l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~-~~ADIvV~AvGkp~~---i~-  215 (281)
T PRK14183        155 VKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHT-KKADIVIVGVGKPNL---IT-  215 (281)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHH-hhCCEEEEecCcccc---cC-
Confidence            457899999965 999999999999999998875432              2345556 799999999975543   22 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++..
T Consensus       216 --~~~vk~gavvIDvGin  231 (281)
T PRK14183        216 --EDMVKEGAIVIDIGIN  231 (281)
T ss_pred             --HHHcCCCcEEEEeecc
Confidence              2468899999999854

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.77  E-value=0.0023  Score=65.09  Aligned_cols=95  Identities=20%  Similarity=0.232  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCCce--ecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNAPF--FADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      ...+++.|+|.|.+|.+++..|.+.|++|++++|+.+.. +.+...+...  ..+..+.....+|+||-|+|.......-
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~  456 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVD  456 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCC
Confidence            346789999999999999999999999999999986543 3333333221  1222221113578999899877532110


Q ss_pred             -hhccccccCCccEEEEcC
Q 044593          106 -KSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       106 -~~l~~~~l~~~~iVvd~~  123 (335)
                       ..+....++++.+|+|+.
T Consensus       457 ~~pl~~~~l~~~~~v~D~v  475 (529)
T PLN02520        457 ETPISKHALKHYSLVFDAV  475 (529)
T ss_pred             CCcccHhhCCCCCEEEEec
Confidence             012113466778999985

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.77  E-value=0.0029  Score=58.81  Aligned_cols=76  Identities=13%  Similarity=0.176  Sum_probs=59.2

Q ss_pred             CCCCeEEEEccc-HHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFG-NFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G-~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+.+|.|||-+ ..|..+|..|...|..|+.+.++..              ++.+.+ ++||+||.|++-..   ++. 
T Consensus       150 l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~--------------~L~~~~-~~ADIvI~Avgk~~---lv~-  210 (279)
T PRK14178        150 IAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE--------------NLKAEL-RQADILVSAAGKAG---FIT-  210 (279)
T ss_pred             CCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChh--------------HHHHHH-hhCCEEEECCCccc---ccC-
Confidence            457899999976 9999999999999999998876532              345556 79999999997442   222 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++..
T Consensus       211 --~~~vk~GavVIDVgi~  226 (279)
T PRK14178        211 --PDMVKPGATVIDVGIN  226 (279)
T ss_pred             --HHHcCCCcEEEEeecc
Confidence              2347899999999854

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.76  E-value=0.004  Score=58.17  Aligned_cols=75  Identities=15%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..++++.||| ...+|.-++..|.+.|..|+++....              .++.+.+ ++||+||.|+.-..   ++. 
T Consensus       157 l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~-~~ADIvV~AvGkp~---~i~-  217 (288)
T PRK14171        157 LTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSIT-SKADIVVAAIGSPL---KLT-  217 (288)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEccCCCC---ccC-
Confidence            4578999999 68899999999999999999886432              2345566 78999999998543   222 


Q ss_pred             ccccccCCccEEEEcCC
Q 044593          108 IPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~S  124 (335)
                        ...+++|++|+|++-
T Consensus       218 --~~~vk~GavVIDvGi  232 (288)
T PRK14171        218 --AEYFNPESIVIDVGI  232 (288)
T ss_pred             --HHHcCCCCEEEEeec
Confidence              246889999999973

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.76  E-value=0.004  Score=58.04  Aligned_cols=76  Identities=16%  Similarity=0.211  Sum_probs=59.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHH--cCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFAR--HHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~--~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      ..++++.||| .+.+|.-++..|.+  .+..|+++....              .++.+.+ ++||+||.|+.-...   +
T Consensus       156 l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T--------------~~l~~~~-k~ADIvV~AvGkp~~---i  217 (284)
T PRK14193        156 LAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT--------------RDLAAHT-RRADIIVAAAGVAHL---V  217 (284)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC--------------CCHHHHH-HhCCEEEEecCCcCc---c
Confidence            3578999999 68999999999988  688898886542              2445666 799999999986542   2


Q ss_pred             hhccccccCCccEEEEcCCC
Q 044593          106 KSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~Sv  125 (335)
                         ...++++|++|+|++..
T Consensus       218 ---~~~~ik~GavVIDvGin  234 (284)
T PRK14193        218 ---TADMVKPGAAVLDVGVS  234 (284)
T ss_pred             ---CHHHcCCCCEEEEcccc
Confidence               23568899999999854

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.75  E-value=0.0053  Score=53.24  Aligned_cols=32  Identities=25%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      ||+|||+|.+|+.++..|...|. +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            68999999999999999999998 699999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.75  E-value=0.0047  Score=61.73  Aligned_cols=66  Identities=20%  Similarity=0.216  Sum_probs=49.2

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHHcCCeEEEEcCCCCc-HHHHHhCCCceec-ChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQF-LAKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFFA-DLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~s-iA~~L~~~G~~V~~~dr~~~~-~~~a~~~g~~~~~-~~~~~~~~~aDvVIlav   96 (335)
                      .+++|.|||+|..|.+ +|+.|.+.|++|+++|.++.. .+...+.|+.... ...+.+ .++|+||++-
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~-~~~d~vv~sp   74 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENI-KDADVVVYSS   74 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHC-CCCCEEEECC
Confidence            4578999999999999 899999999999999987642 2334556776532 223334 6799999854

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=96.75  E-value=0.0047  Score=59.19  Aligned_cols=75  Identities=15%  Similarity=0.166  Sum_probs=59.5

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.||| ...+|.-++..|.+.|..|+++....              .++.+.+ ++||+||.|+.-...   +  
T Consensus       229 l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~-r~ADIVIsAvGkp~~---i--  288 (364)
T PLN02616        229 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEIT-READIIISAVGQPNM---V--  288 (364)
T ss_pred             CCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHH-hhCCEEEEcCCCcCc---C--
Confidence            4678999999 78899999999999999999886432              2345666 899999999986543   2  


Q ss_pred             ccccccCCccEEEEcCC
Q 044593          108 IPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~S  124 (335)
                       ....+++|++|+|++-
T Consensus       289 -~~d~vK~GAvVIDVGI  304 (364)
T PLN02616        289 -RGSWIKPGAVVIDVGI  304 (364)
T ss_pred             -CHHHcCCCCEEEeccc
Confidence             2346889999999974

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=96.74  E-value=0.0094  Score=56.92  Aligned_cols=64  Identities=19%  Similarity=0.127  Sum_probs=42.3

Q ss_pred             eEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCCCcH-HHHHhC-----------CCceecChhhHhhcCCCEE
Q 044593           33 KIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSDHSP-AVRQQL-----------NAPFFADLNDLCELHPDVV   92 (335)
Q Consensus        33 kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~~~~-~~a~~~-----------g~~~~~~~~~~~~~~aDvV   92 (335)
                      ||+|||+ |.+|++++..|...+.       ++.++|+++... ..+..+           ++...++..+.+ ++||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~-~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAF-TDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHh-CCCCEE
Confidence            6999999 9999999999988653       599999965421 111111           111122323445 799999


Q ss_pred             EEecC
Q 044593           93 LLSTS   97 (335)
Q Consensus        93 Ilavp   97 (335)
                      |++.-
T Consensus        80 VitAG   84 (324)
T TIGR01758        80 ILVGA   84 (324)
T ss_pred             EEcCC
Confidence            99663

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.73  E-value=0.007  Score=50.42  Aligned_cols=32  Identities=19%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      ||.|||+|.+|+.+++.|...|. +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            68999999999999999999998 799999885

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=96.72  E-value=0.0049  Score=58.90  Aligned_cols=66  Identities=24%  Similarity=0.298  Sum_probs=45.7

Q ss_pred             EEEEcccHHHHHHHHHHHHc-CCeEEE-EcCCCCcH-HHHHhCCCc------------------eecChhhHhhcCCCEE
Q 044593           34 IAVIGFGNFGQFLAKAFARH-HHTLLV-HSRSDHSP-AVRQQLNAP------------------FFADLNDLCELHPDVV   92 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~-G~~V~~-~dr~~~~~-~~a~~~g~~------------------~~~~~~~~~~~~aDvV   92 (335)
                      |+|+|+|.||..+++++.+. +.+|++ .|.+++.. ..+..+|+.                  ...+++++. .++|+|
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl-~~vDiV   79 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLL-EKVDIV   79 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHh-hcCCEE
Confidence            68999999999999998764 467654 57665532 333333322                  233567776 789999


Q ss_pred             EEecCchh
Q 044593           93 LLSTSILS  100 (335)
Q Consensus        93 Ilavp~~~  100 (335)
                      +.|+|...
T Consensus        80 ve~Tp~~~   87 (333)
T TIGR01546        80 VDATPGGI   87 (333)
T ss_pred             EECCCCCC
Confidence            99998765

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.72  E-value=0.0046  Score=62.04  Aligned_cols=69  Identities=23%  Similarity=0.217  Sum_probs=50.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-c----HHHHHhCCCceecC-hhhHhhcCCCEEEEecC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-S----PAVRQQLNAPFFAD-LNDLCELHPDVVLLSTS   97 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~----~~~a~~~g~~~~~~-~~~~~~~~aDvVIlavp   97 (335)
                      ....++|.|||.|.+|.++|..|.+.|++|+++|+++. .    .+..++.|+..... ..+.. ..+|+||+++-
T Consensus        13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~-~~~D~Vv~s~G   87 (480)
T PRK01438         13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLP-EDTDLVVTSPG   87 (480)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcccc-CCCCEEEECCC
Confidence            34567999999999999999999999999999997653 1    23345668765321 11223 57999999873

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.72  E-value=0.0043  Score=59.30  Aligned_cols=64  Identities=17%  Similarity=0.208  Sum_probs=45.6

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEec
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      .....++|.|||+|-||...++.|.++|. +|++.+|+....... +...    ..-++. .++|+||.|+
T Consensus       170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~-~~~~----~~~~~~-~~~DvVIs~t  234 (338)
T PRK00676        170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYR-TVVR----EELSFQ-DPYDVIFFGS  234 (338)
T ss_pred             CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchh-hhhh----hhhhcc-cCCCEEEEcC
Confidence            34567899999999999999999999995 799999997532210 0000    001223 6899999974

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.71  E-value=0.0045  Score=57.63  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=59.2

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.||| ...+|.-++..|.+.|..|+++....              .++.+.. ++||+||.|+.-..   .+. 
T Consensus       155 l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~-~~ADIvI~AvGk~~---~i~-  215 (282)
T PRK14182        155 PKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEV-GRADILVAAIGKAE---LVK-  215 (282)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEecCCcC---ccC-
Confidence            3578999999 68899999999999999999886442              2345556 78999999998543   222 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++..
T Consensus       216 --~~~ik~gaiVIDvGin  231 (282)
T PRK14182        216 --GAWVKEGAVVIDVGMN  231 (282)
T ss_pred             --HHHcCCCCEEEEeece
Confidence              3468899999999854

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.70  E-value=0.0057  Score=60.74  Aligned_cols=69  Identities=17%  Similarity=0.228  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-cH----HHHHhCCCcee-c-ChhhHhhcCCCEEEEecCc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-SP----AVRQQLNAPFF-A-DLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~~----~~a~~~g~~~~-~-~~~~~~~~~aDvVIlavp~   98 (335)
                      ++.++|.|+|.|.+|..+|..|.+.|++|+++|++.. ..    +...+.|+... . ..++.. .++|+||.++-.
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~d~vv~~~g~   78 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFL-EGVDLVVVSPGV   78 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHh-hcCCEEEECCCC
Confidence            4578999999999999999999999999999999852 22    22334465432 1 122333 679999998754

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=96.70  E-value=0.011  Score=55.48  Aligned_cols=92  Identities=11%  Similarity=0.108  Sum_probs=66.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcC--CCEEEEecCchhHHHHHh
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELH--PDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--aDvVIlavp~~~~~~vl~  106 (335)
                      +..||.|.| .|.+|..+-..+...|++ .++..++..-. ..-.|+..+.+..++. +.  .|++++++|...+.++++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~-~~v~G~~~y~sv~dlp-~~~~~Dlavi~vpa~~v~~~l~   81 (286)
T TIGR01019         5 KDTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGG-TTVLGLPVFDSVKEAV-EETGANASVIFVPAPFAADAIF   81 (286)
T ss_pred             CCCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCc-ceecCeeccCCHHHHh-hccCCCEEEEecCHHHHHHHHH
Confidence            456899999 799999999999999987 55555554100 1124777888888886 44  799999999999999999


Q ss_pred             hccccccCCccEEEEcCCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK  126 (335)
                      +...  ..-+.+|+-.++..
T Consensus        82 e~~~--~Gvk~avIis~Gf~   99 (286)
T TIGR01019        82 EAID--AGIELIVCITEGIP   99 (286)
T ss_pred             HHHH--CCCCEEEEECCCCC
Confidence            8742  23334555444443

ATP citrate lyases appear to form an outgroup.

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=96.70  E-value=0.0051  Score=49.46  Aligned_cols=80  Identities=26%  Similarity=0.279  Sum_probs=48.8

Q ss_pred             cccHHHHHHHHHHHHc----CCeE-EEEcCC--CCcHHHHHhCCCceecChhhHhhc--CCCEEEEecCchhHHHHHhhc
Q 044593           38 GFGNFGQFLAKAFARH----HHTL-LVHSRS--DHSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        38 G~G~mG~siA~~L~~~----G~~V-~~~dr~--~~~~~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp~~~~~~vl~~l  108 (335)
                      |+|.||+.++..|.+.    +++| .+++++  ..........+.....++++++ .  +.|+||=|++.....+.+...
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dvvVE~t~~~~~~~~~~~~   79 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELI-DDPDIDVVVECTSSEAVAEYYEKA   79 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHH-THTT-SEEEE-SSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHh-cCcCCCEEEECCCchHHHHHHHHH
Confidence            8999999999999886    4565 456887  1111222233455667777776 5  788888888877666655443


Q ss_pred             cccccCCccEEEEc
Q 044593          109 PFQRLKRSTLFVDV  122 (335)
Q Consensus       109 ~~~~l~~~~iVvd~  122 (335)
                          ++.|.-|+..
T Consensus        80 ----L~~G~~VVt~   89 (117)
T PF03447_consen   80 ----LERGKHVVTA   89 (117)
T ss_dssp             ----HHTTCEEEES
T ss_pred             ----HHCCCeEEEE
Confidence                4455555543

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.68  E-value=0.021  Score=56.71  Aligned_cols=66  Identities=15%  Similarity=0.131  Sum_probs=48.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc----HHHHHhCCCcee--cChhhHhhcC-CCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS----PAVRQQLNAPFF--ADLNDLCELH-PDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~----~~~a~~~g~~~~--~~~~~~~~~~-aDvVIlav   96 (335)
                      .+++|.|+|.|.+|.+.|+.|.+.|++|+++|++...    .+...+.|+...  .+..+.. .. +|+||.+.
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~d~vV~s~   76 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELL-DEDFDLMVKNP   76 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHh-cCcCCEEEECC
Confidence            4678999999999999999999999999999987532    133445576543  2233333 33 89998865

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=96.67  E-value=0.0045  Score=59.05  Aligned_cols=76  Identities=20%  Similarity=0.234  Sum_probs=59.6

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.||| ...+|.-+|..|.+.|..|+++....              .++.+.. ++||+||.|+.-...   +. 
T Consensus       212 l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~-~~ADIvIsAvGkp~~---v~-  272 (345)
T PLN02897        212 IAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQIT-RKADIVIAAAGIPNL---VR-  272 (345)
T ss_pred             CCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHH-hhCCEEEEccCCcCc---cC-
Confidence            4689999999 68899999999999999998886432              2345566 799999999986543   22 


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                        ...+++|++|+|++..
T Consensus       273 --~d~vk~GavVIDVGin  288 (345)
T PLN02897        273 --GSWLKPGAVVIDVGTT  288 (345)
T ss_pred             --HHHcCCCCEEEEcccc
Confidence              2468899999999854

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.65  E-value=0.0063  Score=57.11  Aligned_cols=75  Identities=15%  Similarity=0.327  Sum_probs=57.8

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHc----CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARH----HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~----G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ..+++|.||| ...+|.-+|..|.+.    +..|+++....              .++.+.+ ++||+||.|+.-...  
T Consensus       159 l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~-~~ADIvVsAvGkp~~--  221 (297)
T PRK14168        159 TSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHC-QRADILIVAAGVPNL--  221 (297)
T ss_pred             CCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHH-hhCCEEEEecCCcCc--
Confidence            4578999999 789999999999987    67888875432              2345566 799999999875543  


Q ss_pred             HHhhccccccCCccEEEEcCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~S  124 (335)
                          +....+++|++|+|++-
T Consensus       222 ----i~~~~ik~gavVIDvGi  238 (297)
T PRK14168        222 ----VKPEWIKPGATVIDVGV  238 (297)
T ss_pred             ----cCHHHcCCCCEEEecCC
Confidence                22356889999999974

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=96.64  E-value=0.018  Score=56.14  Aligned_cols=68  Identities=19%  Similarity=0.184  Sum_probs=44.4

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCC-e----E--EEE--cCCCCcHH-HHHh---------CCCceecChhhHhhcC
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHH-T----L--LVH--SRSDHSPA-VRQQ---------LNAPFFADLNDLCELH   88 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~-~----V--~~~--dr~~~~~~-~a~~---------~g~~~~~~~~~~~~~~   88 (335)
                      ...-||+|||+ |.+|+++|..|...|. .    |  .++  |++.+..+ .+.+         .++....+..+.+ ++
T Consensus        42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~-kd  120 (387)
T TIGR01757        42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVF-ED  120 (387)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHh-CC
Confidence            34689999999 9999999999998764 2    3  445  77765432 1111         1222223333444 89


Q ss_pred             CCEEEEecC
Q 044593           89 PDVVLLSTS   97 (335)
Q Consensus        89 aDvVIlavp   97 (335)
                      ||+||++.-
T Consensus       121 aDIVVitAG  129 (387)
T TIGR01757       121 ADWALLIGA  129 (387)
T ss_pred             CCEEEECCC
Confidence            999999653

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.64  E-value=0.0056  Score=58.85  Aligned_cols=89  Identities=16%  Similarity=0.165  Sum_probs=57.7

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcC-CeEEEE-cCCCCcHH-HHHhC------C----Cc--eecC-hhhHhhcCCCEEEE
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHH-HTLLVH-SRSDHSPA-VRQQL------N----AP--FFAD-LNDLCELHPDVVLL   94 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G-~~V~~~-dr~~~~~~-~a~~~------g----~~--~~~~-~~~~~~~~aDvVIl   94 (335)
                      +||+|+| .|.||.-+++.|.+.. +++..+ +.++..-+ .....      +    +.  ...+ ..+.. .++|+|++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvVf~   79 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS-KDVDIVFS   79 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh-ccCCEEEE
Confidence            5899999 5999999999998876 577655 54432111 11101      0    11  1111 12233 68999999


Q ss_pred             ecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           95 STSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        95 avp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      |+|.....++...+    ...|+.|+|.++.
T Consensus        80 a~p~~~s~~~~~~~----~~~G~~VIDlsg~  106 (341)
T TIGR00978        80 ALPSEVAEEVEPKL----AEAGKPVFSNASN  106 (341)
T ss_pred             eCCHHHHHHHHHHH----HHCCCEEEECChh
Confidence            99999877777655    2367889999865

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK05086 malate dehydrogenase; Provisional

Probab=96.60  E-value=0.0053  Score=58.30  Aligned_cols=89  Identities=18%  Similarity=0.211  Sum_probs=56.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHH-c--CCeEEEEcCCCCc----HHHHHhCC--Cce----ecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGF-GNFGQFLAKAFAR-H--HHTLLVHSRSDHS----PAVRQQLN--APF----FADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~-~--G~~V~~~dr~~~~----~~~a~~~g--~~~----~~~~~~~~~~~aDvVIlavp   97 (335)
                      |||+|||+ |.+|.+++..+.. .  +++++++|+++..    .+. ...+  ...    .+++.+.+ +++|+||+|.-
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl-~~~~~~~~i~~~~~~d~~~~l-~~~DiVIitaG   78 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDL-SHIPTAVKIKGFSGEDPTPAL-EGADVVLISAG   78 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhh-hcCCCCceEEEeCCCCHHHHc-CCCCEEEEcCC
Confidence            79999998 9999999988854 2  3589999998653    221 1111  111    23434455 78999999875


Q ss_pred             ch----------------hHHHHHhhccccccCCccEEEEcCC
Q 044593           98 IL----------------STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~----------------~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..                .+.++++.+. . ..++.+|+.+++
T Consensus        79 ~~~~~~~~R~dll~~N~~i~~~ii~~i~-~-~~~~~ivivvsN  119 (312)
T PRK05086         79 VARKPGMDRSDLFNVNAGIVKNLVEKVA-K-TCPKACIGIITN  119 (312)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHH-H-hCCCeEEEEccC
Confidence            31                1334444553 2 356667776654

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=96.58  E-value=0.006  Score=58.07  Aligned_cols=89  Identities=10%  Similarity=0.134  Sum_probs=67.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      .++++.|.|+|-.|..+|..++..|.+|.+++.+|-..-.|.-.|..+.+ .++++ ..+|++|.||-...+...= .+ 
T Consensus       208 aGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~-m~~Aa-~~gDifiT~TGnkdVi~~e-h~-  283 (420)
T COG0499         208 AGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMT-MEEAA-KTGDIFVTATGNKDVIRKE-HF-  283 (420)
T ss_pred             cCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEE-hHHhh-hcCCEEEEccCCcCccCHH-HH-
Confidence            56889999999999999999999999999999998544336666877654 45555 7899999999866532211 11 


Q ss_pred             ccccCCccEEEEcC
Q 044593          110 FQRLKRSTLFVDVL  123 (335)
Q Consensus       110 ~~~l~~~~iVvd~~  123 (335)
                       ..++.++++.+.+
T Consensus       284 -~~MkDgaIl~N~G  296 (420)
T COG0499         284 -EKMKDGAILANAG  296 (420)
T ss_pred             -HhccCCeEEeccc
Confidence             2367888988876

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.57  E-value=0.0066  Score=56.69  Aligned_cols=76  Identities=16%  Similarity=0.266  Sum_probs=58.6

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHc----CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARH----HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~----G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ..++++.||| ...+|.-++..|.++    +..|+++....              .++.+.+ ++||+||.|+.-...  
T Consensus       151 l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~-~~ADIvV~AvG~p~~--  213 (287)
T PRK14181        151 LHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEIL-KTADIIIAAIGVPLF--  213 (287)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEccCCcCc--
Confidence            4579999999 688999999999988    67888876432              2345566 789999999986542  


Q ss_pred             HHhhccccccCCccEEEEcCCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                       +.   ...+++|++|+|++..
T Consensus       214 -i~---~~~ik~GavVIDvGin  231 (287)
T PRK14181        214 -IK---EEMIAEKAVIVDVGTS  231 (287)
T ss_pred             -cC---HHHcCCCCEEEEeccc
Confidence             22   3468899999999854

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.57  E-value=0.0084  Score=62.66  Aligned_cols=69  Identities=22%  Similarity=0.286  Sum_probs=51.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC---------------------cHHHHHhCCCceec--------
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH---------------------SPAVRQQLNAPFFA--------   79 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~---------------------~~~~a~~~g~~~~~--------   79 (335)
                      .+.++|+|||.|..|.+.|..|++.|++|+++|+.+.                     ..+.+.+.|+.+..        
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i  404 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI  404 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence            3578999999999999999999999999999998753                     12334556764321        


Q ss_pred             ChhhHhhcCCCEEEEecCc
Q 044593           80 DLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        80 ~~~~~~~~~aDvVIlavp~   98 (335)
                      +..++. .++|.||+++-.
T Consensus       405 ~~~~~~-~~~DavilAtGa  422 (654)
T PRK12769        405 SLESLL-EDYDAVFVGVGT  422 (654)
T ss_pred             CHHHHH-hcCCEEEEeCCC
Confidence            223343 578999998854

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.56  E-value=0.0065  Score=58.83  Aligned_cols=89  Identities=17%  Similarity=0.207  Sum_probs=58.0

Q ss_pred             CCeEEEEc-ccHHHHHHHH-HHHHcCCe---EEEEcCCCCcHHH--HHhCCCcee--cChhhHhhcCCCEEEEecCchhH
Q 044593           31 SLKIAVIG-FGNFGQFLAK-AFARHHHT---LLVHSRSDHSPAV--RQQLNAPFF--ADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~-~L~~~G~~---V~~~dr~~~~~~~--a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      |++|+||| .|.+|.-+.+ .|.+..+.   +..+.......+.  .........  .+..++  .++|++|+|+|....
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~--~~~Divf~a~~~~~s   78 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDAL--KKLDIIITCQGGDYT   78 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHh--cCCCEEEECCCHHHH
Confidence            37999999 5999999998 66666665   6655543221111  111111111  223333  689999999999988


Q ss_pred             HHHHhhccccccCCc--cEEEEcCCC
Q 044593          102 QSVLKSIPFQRLKRS--TLFVDVLSV  125 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~--~iVvd~~Sv  125 (335)
                      .++...+.    +.|  ++|+|.+|.
T Consensus        79 ~~~~~~~~----~aG~~~~VID~Ss~  100 (369)
T PRK06598         79 NEVYPKLR----AAGWQGYWIDAAST  100 (369)
T ss_pred             HHHHHHHH----hCCCCeEEEECChH
Confidence            88887763    356  679999864

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.54  E-value=0.0093  Score=56.29  Aligned_cols=62  Identities=18%  Similarity=0.244  Sum_probs=42.7

Q ss_pred             EEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC---------CCceecChhhHhhcCCCEEEEecCc
Q 044593           36 VIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL---------NAPFFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        36 IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~---------g~~~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      |||+|.+|+++|..|...+.  ++.++|++++..+ .+.++         ......+..+.+ ++||+||++.-.
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~-~daDivVitag~   74 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDC-KDADLVVITAGA   74 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHH-CCCCEEEECCCC
Confidence            79999999999999998875  7999999876432 22221         112222222344 899999997643

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.50  E-value=0.0083  Score=54.26  Aligned_cols=36  Identities=19%  Similarity=0.207  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      .+..||.|||+|.+|+.+|..|...|. +++++|.+.
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            346799999999999999999999997 888898764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.49  E-value=0.009  Score=57.39  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      .+..||.|||+|.+|+.+|..|...|. +++++|.+.
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            356799999999999999999999998 899999874

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.48  E-value=0.0094  Score=56.60  Aligned_cols=89  Identities=21%  Similarity=0.235  Sum_probs=59.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCC--e-EEEE--cCCCCcH-HHHHhCCCcee---cChhhHhhcCCCEEEEecCchh
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHH--T-LLVH--SRSDHSP-AVRQQLNAPFF---ADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~--~-V~~~--dr~~~~~-~~a~~~g~~~~---~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      +++|+|+| .|.+|..+...|.+..+  + +.++  .|+.... -.+....+..-   .+..+.  +++|++|.|.+.+.
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~--~~~Divf~~ag~~~   78 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVF--SDVDIVFFAAGGSV   78 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCcccccccccc--ccCCEEEEeCchHH
Confidence            47899999 69999999999999654  2 3333  4443222 11222212211   222222  68999999999998


Q ss_pred             HHHHHhhccccccCCccEEEEcCCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ..++...+.    +.|++|+|.+|.
T Consensus        79 s~~~~p~~~----~~G~~VIdnsSa   99 (334)
T COG0136          79 SKEVEPKAA----EAGCVVIDNSSA   99 (334)
T ss_pred             HHHHHHHHH----HcCCEEEeCCcc
Confidence            888887763    478999999885

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.48  E-value=0.01  Score=61.88  Aligned_cols=69  Identities=26%  Similarity=0.293  Sum_probs=51.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC---------------------cHHHHHhCCCcee--------c
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH---------------------SPAVRQQLNAPFF--------A   79 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~---------------------~~~~a~~~g~~~~--------~   79 (335)
                      .+.+||+|||.|..|.+.|..|++.|++|++|++.+.                     ..+...+.|+.+.        .
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            3578999999999999999999999999999998863                     1234455666431        1


Q ss_pred             ChhhHhhcCCCEEEEecCc
Q 044593           80 DLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        80 ~~~~~~~~~aDvVIlavp~   98 (335)
                      +..++. .+.|.||+++-.
T Consensus       388 ~~~~l~-~~~DaV~latGa  405 (639)
T PRK12809        388 TFSDLT-SEYDAVFIGVGT  405 (639)
T ss_pred             CHHHHH-hcCCEEEEeCCC
Confidence            233444 578999998864

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.46  E-value=0.0048  Score=48.98  Aligned_cols=81  Identities=12%  Similarity=0.145  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHcCCeEEEEcCCCCcHHHHH---hCCCceecChhhHhhcCCCEEEEecCchhHHH-HHhhccccccCCccE
Q 044593           43 GQFLAKAFARHHHTLLVHSRSDHSPAVRQ---QLNAPFFADLNDLCELHPDVVLLSTSILSTQS-VLKSIPFQRLKRSTL  118 (335)
Q Consensus        43 G~siA~~L~~~G~~V~~~dr~~~~~~~a~---~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~-vl~~l~~~~l~~~~i  118 (335)
                      +--++..|.+.|.+|.+||+.-.......   ..++...+++.+.+ +++|+||++|+-..... -.+.+. ..++++.+
T Consensus        19 ~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vvl~t~h~~f~~l~~~~~~-~~~~~~~~   96 (106)
T PF03720_consen   19 ALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEAL-KGADAVVLATDHDEFRELDWEEIA-KLMRKPPV   96 (106)
T ss_dssp             HHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHH-TTESEEEESS--GGGGCCGHHHHH-HHSCSSEE
T ss_pred             HHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHh-cCCCEEEEEecCHHHhccCHHHHH-HhcCCCCE
Confidence            45688999999999999998865444222   24677777888877 89999999999877554 122332 23457889


Q ss_pred             EEEcCCC
Q 044593          119 FVDVLSV  125 (335)
Q Consensus       119 Vvd~~Sv  125 (335)
                      |+|+-++
T Consensus        97 iiD~~~~  103 (106)
T PF03720_consen   97 IIDGRNI  103 (106)
T ss_dssp             EEESSST
T ss_pred             EEECccc
Confidence            9998654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.45  E-value=0.0056  Score=57.30  Aligned_cols=91  Identities=16%  Similarity=0.225  Sum_probs=63.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-CCc---eec---ChhhHhhcCCCEEEEec--CchhH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-NAP---FFA---DLNDLCELHPDVVLLST--SILST  101 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-g~~---~~~---~~~~~~~~~aDvVIlav--p~~~~  101 (335)
                      .-||.|||.|.+|.--|+.....|.+|++.|+|.+.+...... +..   ..+   .+++.+ .++|+||=++  |....
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v-~~aDlvIgaVLIpgaka  246 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAV-KKADLVIGAVLIPGAKA  246 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHh-hhccEEEEEEEecCCCC
Confidence            4689999999999999999888899999999998766533332 222   122   345555 7899999776  33332


Q ss_pred             HH-HHhhccccccCCccEEEEcC
Q 044593          102 QS-VLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       102 ~~-vl~~l~~~~l~~~~iVvd~~  123 (335)
                      .. +.+++. ..++||.+|+|++
T Consensus       247 PkLvt~e~v-k~MkpGsVivDVA  268 (371)
T COG0686         247 PKLVTREMV-KQMKPGSVIVDVA  268 (371)
T ss_pred             ceehhHHHH-HhcCCCcEEEEEE
Confidence            22 233332 3578999999986

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.41  E-value=0.011  Score=53.03  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS   63 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~   63 (335)
                      .+..+|+|||+|.+|+.++..|...|. +++++|.+
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            356789999999999999999999997 69999988

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.39  E-value=0.0071  Score=55.25  Aligned_cols=36  Identities=14%  Similarity=0.252  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      .+..||.|+|+|.+|+.++..|...|. +++++|.+.
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            456799999999999999999999997 889999875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.36  E-value=0.012  Score=59.50  Aligned_cols=65  Identities=28%  Similarity=0.261  Sum_probs=46.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc--HHHHHhC--CCceec--ChhhHhhcCCCEEEEe
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS--PAVRQQL--NAPFFA--DLNDLCELHPDVVLLS   95 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~--~~~a~~~--g~~~~~--~~~~~~~~~aDvVIla   95 (335)
                      .+++|.|+|.|..|.++|+.|.+.|++|+++|.+...  .+...+.  |+....  ...+.+ .++|+||++
T Consensus         6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~-~~~d~vv~s   76 (498)
T PRK02006          6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALL-DGVDLVALS   76 (498)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHh-cCCCEEEEC
Confidence            4578999999999999999999999999999976532  2223344  443321  123344 689999996

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.36  E-value=0.013  Score=56.58  Aligned_cols=87  Identities=18%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHh-CCCceecCh-h--------hHhh-cCCCEEEEecCchh
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQ-LNAPFFADL-N--------DLCE-LHPDVVLLSTSILS  100 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~-~g~~~~~~~-~--------~~~~-~~aDvVIlavp~~~  100 (335)
                      ++.|+|+|.||...+..++..|. +|++.|++++.++.|++ .|.....+. .        +... ..+|++|-|+....
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~  250 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP  250 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence            89999999999999888888885 78888999999998988 454422221 1        1110 25899999998433


Q ss_pred             HHHHHhhccccccCCccEEEEcC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                         .+.+.. ..++++..|+-++
T Consensus       251 ---~~~~ai-~~~r~gG~v~~vG  269 (350)
T COG1063         251 ---ALDQAL-EALRPGGTVVVVG  269 (350)
T ss_pred             ---HHHHHH-HHhcCCCEEEEEe
Confidence               222221 2355666666554

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.35  E-value=0.013  Score=53.68  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=31.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      +..||+|||+|.+|+.++..|...|. +++++|.+.
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            46799999999999999999999997 889998774

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.33  E-value=0.0084  Score=53.87  Aligned_cols=64  Identities=27%  Similarity=0.256  Sum_probs=49.2

Q ss_pred             EEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc--HHHHHhCCCce----ecC---hhhHhhcCCCEEEEecCc
Q 044593           34 IAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS--PAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        34 I~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~--~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp~   98 (335)
                      |+|+| .|.+|+.++.+|.+.+++|.+.-|++..  .+...+.|+..    ..+   +.+++ +++|.||++++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al-~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAAL-KGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHH-TTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHH-cCCceEEeecCc
Confidence            78999 5999999999999999999999998743  34455677753    222   33345 799999999994

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.33  E-value=0.0084  Score=57.29  Aligned_cols=65  Identities=15%  Similarity=0.137  Sum_probs=44.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHcC-------CeEEEEcCCCCc--HHHHHhC-----------CCceecChhhHhhcCC
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARHH-------HTLLVHSRSDHS--PAVRQQL-----------NAPFFADLNDLCELHP   89 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~G-------~~V~~~dr~~~~--~~~a~~~-----------g~~~~~~~~~~~~~~a   89 (335)
                      ..||+|+|+ |.+|++++..|...+       .+|.++|+++..  .+ ....           .+....+..+.+ ++|
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~-g~~~Dl~d~~~~~~~~~~~~~~~~~~l-~~a   79 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALE-GVVMELQDCAFPLLKSVVATTDPEEAF-KDV   79 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccc-ceeeehhhccccccCCceecCCHHHHh-CCC
Confidence            468999998 999999999998854       489999996531  11 1111           111234544555 899


Q ss_pred             CEEEEecC
Q 044593           90 DVVLLSTS   97 (335)
Q Consensus        90 DvVIlavp   97 (335)
                      |+||++.-
T Consensus        80 DiVI~tAG   87 (325)
T cd01336          80 DVAILVGA   87 (325)
T ss_pred             CEEEEeCC
Confidence            99998763

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.33  E-value=0.026  Score=53.61  Aligned_cols=81  Identities=20%  Similarity=0.290  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHc---CCeEE-EEcCCCCc-HHHHHhCCC---ceecChhhHhh-cCCCEEEEecCc
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARH---HHTLL-VHSRSDHS-PAVRQQLNA---PFFADLNDLCE-LHPDVVLLSTSI   98 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~---G~~V~-~~dr~~~~-~~~a~~~g~---~~~~~~~~~~~-~~aDvVIlavp~   98 (335)
                      .+..-|+||+|+|.|++-++++|.-.   +|.|+ +.||+.+. .+.|.+.++   ..+.+.++++. ..+|+|.+++|.
T Consensus         3 ~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~   82 (351)
T KOG2741|consen    3 DSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPN   82 (351)
T ss_pred             CCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCC
Confidence            34567999999999999999998653   67765 56887653 567888887   35677888872 356999999999


Q ss_pred             hhHHHHHhhc
Q 044593           99 LSTQSVLKSI  108 (335)
Q Consensus        99 ~~~~~vl~~l  108 (335)
                      .+-.+++..+
T Consensus        83 ~qH~evv~l~   92 (351)
T KOG2741|consen   83 PQHYEVVMLA   92 (351)
T ss_pred             ccHHHHHHHH
Confidence            8877766544

>PRK06153 hypothetical protein; Provisional

Probab=96.33  E-value=0.01  Score=57.58  Aligned_cols=34  Identities=21%  Similarity=0.446  Sum_probs=31.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS   63 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~   63 (335)
                      +..+|+|||+|..|+.++..|++.|. +++++|.+
T Consensus       175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            45799999999999999999999997 88999876

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=96.31  E-value=0.012  Score=56.21  Aligned_cols=89  Identities=18%  Similarity=0.179  Sum_probs=56.8

Q ss_pred             eEEEEcccHHHHHHHHHHHHcC----CeEEEE-cCCCC-cHHHHHhCCC-----------------------ce--ecCh
Q 044593           33 KIAVIGFGNFGQFLAKAFARHH----HTLLVH-SRSDH-SPAVRQQLNA-----------------------PF--FADL   81 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G----~~V~~~-dr~~~-~~~~a~~~g~-----------------------~~--~~~~   81 (335)
                      ||+|+|+|.||..+.+.+.+.+    ++|..+ |.... ......+.+.                       ..  ..++
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p   80 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP   80 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence            6999999999999999988754    676554 43322 2222222211                       01  1244


Q ss_pred             hhHhh--cCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           82 NDLCE--LHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        82 ~~~~~--~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .++.+  .++|+||.|++.....+....    +++.|+.++++++-
T Consensus        81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~----~l~aGa~~V~~SaP  122 (325)
T TIGR01532        81 EALPWRALGVDLVLDCTGVYGNREQGER----HIRAGAKRVLFSHP  122 (325)
T ss_pred             hhccccccCCCEEEEccchhccHHHHHH----HHHcCCeEEEecCC
Confidence            44432  479999999998876665543    35678888888753

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.30  E-value=0.028  Score=53.63  Aligned_cols=89  Identities=18%  Similarity=0.197  Sum_probs=62.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec-----ChhhHhh--cCCCEEEEecCchh-
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA-----DLNDLCE--LHPDVVLLSTSILS-  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~-----~~~~~~~--~~aDvVIlavp~~~-  100 (335)
                      ...+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|+...-     +..+...  ...|+||-|+.... 
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~  248 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSS  248 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHH
Confidence            46799999999999999999898998 688999999888889999875321     1222210  13788888877532 


Q ss_pred             HHHHHhhccccccCCccEEEEcC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      +...++-     ++++..++.++
T Consensus       249 ~~~~~~~-----l~~~G~iv~~G  266 (343)
T PRK09880        249 INTCLEV-----TRAKGVMVQVG  266 (343)
T ss_pred             HHHHHHH-----hhcCCEEEEEc
Confidence            3333333     44566666665

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=96.29  E-value=0.024  Score=56.28  Aligned_cols=68  Identities=13%  Similarity=0.151  Sum_probs=47.0

Q ss_pred             CeEEEEcccHH-HHHHHHHHHHc-----CCeEEEEcCCCCcHHHH--------HhCCC----ceecChhhHhhcCCCEEE
Q 044593           32 LKIAVIGFGNF-GQFLAKAFARH-----HHTLLVHSRSDHSPAVR--------QQLNA----PFFADLNDLCELHPDVVL   93 (335)
Q Consensus        32 ~kI~IIG~G~m-G~siA~~L~~~-----G~~V~~~dr~~~~~~~a--------~~~g~----~~~~~~~~~~~~~aDvVI   93 (335)
                      |||+|||.|.. +-.+...|...     +-+|+.+|.+++..+..        .+.|.    ..++|..+++ ++||+||
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl-~gADfVi   79 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAF-TDADFVF   79 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHh-CCCCEEE
Confidence            79999999874 22344444433     24899999999765432        22232    3578888888 8999999


Q ss_pred             EecCchh
Q 044593           94 LSTSILS  100 (335)
Q Consensus        94 lavp~~~  100 (335)
                      .+.-...
T Consensus        80 ~~irvGg   86 (437)
T cd05298          80 AQIRVGG   86 (437)
T ss_pred             EEeeeCC
Confidence            9886654

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.27  E-value=0.015  Score=54.43  Aligned_cols=76  Identities=20%  Similarity=0.324  Sum_probs=58.1

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHc----CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARH----HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~----G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ..+++|.||| ...+|.-++..|.+.    +..|+++....              .++.+.+ ++||+||.|+.-...  
T Consensus       155 l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~-~~ADIvIsAvGkp~~--  217 (293)
T PRK14185        155 TSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKEC-LEADIIIAALGQPEF--  217 (293)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHH-hhCCEEEEccCCcCc--
Confidence            4578999999 688999999999987    56888775432              2345566 789999999986543  


Q ss_pred             HHhhccccccCCccEEEEcCCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                       +.   ...+++|++|+|++..
T Consensus       218 -i~---~~~vk~gavVIDvGin  235 (293)
T PRK14185        218 -VK---ADMVKEGAVVIDVGTT  235 (293)
T ss_pred             -cC---HHHcCCCCEEEEecCc
Confidence             22   2458899999999854

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.26  E-value=0.017  Score=57.96  Aligned_cols=69  Identities=28%  Similarity=0.353  Sum_probs=51.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC---------------------cHHHHHhCCCceec--------C
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH---------------------SPAVRQQLNAPFFA--------D   80 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~---------------------~~~~a~~~g~~~~~--------~   80 (335)
                      +.++|.|||.|..|.+.|..|++.|++|+++++.+.                     ..+.+.+.|+....        .
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~  219 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDIS  219 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccC
Confidence            568999999999999999999999999999998753                     12345666764321        1


Q ss_pred             hhhHhhcCCCEEEEecCch
Q 044593           81 LNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        81 ~~~~~~~~aDvVIlavp~~   99 (335)
                      ..++. ..+|.||+|+-..
T Consensus       220 ~~~~~-~~~D~vilAtGa~  237 (467)
T TIGR01318       220 LDDLL-EDYDAVFLGVGTY  237 (467)
T ss_pred             HHHHH-hcCCEEEEEeCCC
Confidence            23333 4689999988643

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.25  E-value=0.043  Score=50.39  Aligned_cols=104  Identities=20%  Similarity=0.156  Sum_probs=68.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcC-CeE-EEEcCCCCcH--HHH------HhCCCceecChhhHhhcCCCEEEEecCc
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHH-HTL-LVHSRSDHSP--AVR------QQLNAPFFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G-~~V-~~~dr~~~~~--~~a------~~~g~~~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      ++|||+|+|+ |.||..+.+.+.+.. +++ -++|+.+...  ..+      ...|+...+++.... .++|++|=-|-+
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~-~~~DV~IDFT~P   79 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVK-ADADVLIDFTTP   79 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcc-cCCCEEEECCCc
Confidence            3689999996 999999999998875 564 5678876422  111      223455555555544 789999976666


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL  137 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l  137 (335)
                      ..+.+.++....   .+-.+|+=+++....-.+.+++..
T Consensus        80 ~~~~~~l~~~~~---~~~~lVIGTTGf~~e~~~~l~~~a  115 (266)
T COG0289          80 EATLENLEFALE---HGKPLVIGTTGFTEEQLEKLREAA  115 (266)
T ss_pred             hhhHHHHHHHHH---cCCCeEEECCCCCHHHHHHHHHHH
Confidence            766666665421   123467777666665566665543

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.25  E-value=0.027  Score=53.94  Aligned_cols=69  Identities=19%  Similarity=0.299  Sum_probs=49.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcC---CCCcHHHHHhCCCceecChh----h--HhhcCCCEEEEecCch
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSR---SDHSPAVRQQLNAPFFADLN----D--LCELHPDVVLLSTSIL   99 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr---~~~~~~~a~~~g~~~~~~~~----~--~~~~~aDvVIlavp~~   99 (335)
                      .+.+|.|+|+|.+|...+..++..|.+|+++++   +++..+.+++.|+......+    +  .. ..+|+||-|+...
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~-~~~d~vid~~g~~  249 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLV-GEFDLIIEATGVP  249 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhc-CCCCEEEECcCCH
Confidence            467899999999999999999999999999998   45566778888875321110    0  11 3467777777643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.24  E-value=0.014  Score=54.52  Aligned_cols=76  Identities=21%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHH----cCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFAR----HHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~----~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ..++++.||| ...+|.-++..|.+    .+..|+.+..+.              .++.+.+ ++||+||.|++...+  
T Consensus       155 l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~-~~ADIVI~AvG~p~l--  217 (286)
T PRK14184        155 PAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEEC-READFLFVAIGRPRF--  217 (286)
T ss_pred             CCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHH-HhCCEEEEecCCCCc--
Confidence            3578999999 68899999999998    677888887543              2345566 789999999975543  


Q ss_pred             HHhhccccccCCccEEEEcCCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                       +.   ...+++|++|+|++-.
T Consensus       218 -i~---~~~vk~GavVIDVGi~  235 (286)
T PRK14184        218 -VT---ADMVKPGAVVVDVGIN  235 (286)
T ss_pred             -CC---HHHcCCCCEEEEeeee
Confidence             22   2457899999999743

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.23  E-value=0.016  Score=54.43  Aligned_cols=75  Identities=17%  Similarity=0.250  Sum_probs=56.8

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHc----CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARH----HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~----G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      -.+++|.||| ...+|.-+|..|.+.    +..|+++....              .++.+.. ++||+||.|+.-..   
T Consensus       155 l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~-~~ADIvIsAvGkp~---  216 (297)
T PRK14167        155 TEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKT-RRADIVVAAAGVPE---  216 (297)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHH-hhCCEEEEccCCcC---
Confidence            4578999999 688999999999887    67888875432              2345556 79999999986544   


Q ss_pred             HHhhccccccCCccEEEEcCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ++.   ...+++|++|+|++-
T Consensus       217 ~i~---~~~ik~gaiVIDvGi  234 (297)
T PRK14167        217 LID---GSMLSEGATVIDVGI  234 (297)
T ss_pred             ccC---HHHcCCCCEEEEccc
Confidence            222   246889999999974

>PRK08223 hypothetical protein; Validated

Probab=96.22  E-value=0.017  Score=54.11  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=31.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      +..+|.|||+|.+|+.++..|+..|. ++.++|.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            46799999999999999999999997 889998875

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.21  E-value=0.015  Score=56.71  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS   63 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~   63 (335)
                      .+..||.|||+|.+|+.++..|...|. +++++|.+
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            356799999999999999999999997 79999987

>PRK08328 hypothetical protein; Provisional

Probab=96.20  E-value=0.018  Score=52.28  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=32.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~   65 (335)
                      +..||+|||+|.+|+.++..|...|. +++++|.+.-
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v   62 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP   62 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            46789999999999999999999997 7999998753

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=96.19  E-value=0.014  Score=54.76  Aligned_cols=106  Identities=20%  Similarity=0.139  Sum_probs=71.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHh-------------------CCCceecChhhHhhcCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQ-------------------LNAPFFADLNDLCELHP   89 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~~-------------------~g~~~~~~~~~~~~~~a   89 (335)
                      ++||.-||+|.+|+-....++-+  ..+|+++|.+...+.....                   .+..+.++.+..+ .++
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai-~ea   79 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAI-KEA   79 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHh-hhc
Confidence            47899999999999876655543  2478899988765542221                   1223456777777 899


Q ss_pred             CEEEEecCch---------------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593           90 DVVLLSTSIL---------------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus        90 DvVIlavp~~---------------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                      |+|+++|...               .++...+.++ +.-....+|+.-+++.....+.+...+.
T Consensus        80 dlvfisvntptkt~g~gkg~aadlky~es~ar~ia-~~s~~~kivvekstvpv~aaesi~~il~  142 (481)
T KOG2666|consen   80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMIA-DVSVSDKIVVEKSTVPVKAAESIEKILN  142 (481)
T ss_pred             ceEEEEecCCcccccCCCCcccchhHHHHHHHHHH-HhccCCeEEEeeccccchHHHHHHHHHh
Confidence            9999987432               2455555554 3445667999888876666666766664

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.19  E-value=0.012  Score=52.02  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=31.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      +..||.|||+|.+|+.+++.|...|. +++++|.+.
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            45789999999999999999999997 799999874

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.17  E-value=0.051  Score=54.01  Aligned_cols=66  Identities=18%  Similarity=0.158  Sum_probs=48.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc--HHHHHh--CCCceec-C-hhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS--PAVRQQ--LNAPFFA-D-LNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~--~~~a~~--~g~~~~~-~-~~~~~~~~aDvVIlav   96 (335)
                      ..++|.|+|.|..|.+.|+.|.+.|++|+++|.++..  .....+  .|+.... . ..... .++|+||.+.
T Consensus         4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~-~~~d~vv~sp   75 (445)
T PRK04308          4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALD-NGFDILALSP   75 (445)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHH-hCCCEEEECC
Confidence            4679999999999999999999999999999987643  222232  3665422 1 22333 5799999865

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.14  E-value=0.038  Score=51.18  Aligned_cols=47  Identities=19%  Similarity=0.223  Sum_probs=40.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCCCcHHHHHhCCCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSDHSPAVRQQLNAP   76 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~~~~~~a~~~g~~   76 (335)
                      ...+|.|+|.|.+|...+..++..|.+ |++.+++++..+.++++|+.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  167 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT  167 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence            467899999999999999999999986 88889888888888888874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.12  E-value=0.022  Score=59.52  Aligned_cols=70  Identities=26%  Similarity=0.320  Sum_probs=50.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc---------------------HHHHHhCCCceec-------
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS---------------------PAVRQQLNAPFFA-------   79 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~---------------------~~~a~~~g~~~~~-------   79 (335)
                      ....++|+|||.|..|.+.|..|++.|++|+++|+++..                     .+...+.|+....       
T Consensus       190 ~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d  269 (652)
T PRK12814        190 PKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD  269 (652)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCc
Confidence            345789999999999999999999999999999987532                     2234455664311       


Q ss_pred             -ChhhHhhcCCCEEEEecCc
Q 044593           80 -DLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        80 -~~~~~~~~~aDvVIlavp~   98 (335)
                       +.+++. ..+|.||+||-.
T Consensus       270 v~~~~~~-~~~DaVilAtGa  288 (652)
T PRK12814        270 ITLEELQ-KEFDAVLLAVGA  288 (652)
T ss_pred             cCHHHHH-hhcCEEEEEcCC
Confidence             123333 468999998854

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=96.10  E-value=0.018  Score=50.29  Aligned_cols=69  Identities=16%  Similarity=0.151  Sum_probs=43.3

Q ss_pred             eEEEEcccHHHHH--HHHHHHHc----CCeEEEEcCCCCcHHH--------HHhCCC----ceecChhhHhhcCCCEEEE
Q 044593           33 KIAVIGFGNFGQF--LAKAFARH----HHTLLVHSRSDHSPAV--------RQQLNA----PFFADLNDLCELHPDVVLL   94 (335)
Q Consensus        33 kI~IIG~G~mG~s--iA~~L~~~----G~~V~~~dr~~~~~~~--------a~~~g~----~~~~~~~~~~~~~aDvVIl   94 (335)
                      ||+|||.|..-..  +...+...    +.+|..+|+|++.++.        +++.|.    ..++|..+++ +++|+||.
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl-~gADfVi~   79 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREAL-EGADFVIN   79 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHH-TTESEEEE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHh-CCCCEEEE
Confidence            7999999876433  23333322    2389999999876542        223343    3478888888 89999999


Q ss_pred             ecCchhHH
Q 044593           95 STSILSTQ  102 (335)
Q Consensus        95 avp~~~~~  102 (335)
                      +.-.....
T Consensus        80 ~irvGg~~   87 (183)
T PF02056_consen   80 QIRVGGLE   87 (183)
T ss_dssp             ---TTHHH
T ss_pred             EeeecchH
Confidence            98776543

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=96.09  E-value=0.019  Score=53.19  Aligned_cols=75  Identities=20%  Similarity=0.249  Sum_probs=58.3

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      .++++.|||- ..+|.-++..|...++.|+++.....              ++.+.. +++|+||.|+--..+   ++  
T Consensus       155 ~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~--------------~l~~~~-k~ADIvv~AvG~p~~---i~--  214 (283)
T COG0190         155 RGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTK--------------DLASIT-KNADIVVVAVGKPHF---IK--  214 (283)
T ss_pred             CCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCC--------------CHHHHh-hhCCEEEEecCCccc---cc--
Confidence            5789999995 56799999999999999999875532              334556 789999999875432   22  


Q ss_pred             cccccCCccEEEEcCCC
Q 044593          109 PFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~Sv  125 (335)
                       .+.+++|.+|+|++..
T Consensus       215 -~d~vk~gavVIDVGin  230 (283)
T COG0190         215 -ADMVKPGAVVIDVGIN  230 (283)
T ss_pred             -cccccCCCEEEecCCc
Confidence             2568999999999854

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.00  E-value=0.019  Score=53.99  Aligned_cols=76  Identities=13%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHH----cCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFAR----HHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~----~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ..+++|.||| ...+|.-++..|.+    .+..|+.+..+..              ++.+.+ ++||+||.|++-..   
T Consensus       157 l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~--------------~l~~~~-~~ADIvI~Avg~~~---  218 (295)
T PRK14174        157 TKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATK--------------DIPSYT-RQADILIAAIGKAR---  218 (295)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCch--------------hHHHHH-HhCCEEEEecCccC---
Confidence            4578999999 68899999999987    5788888765532              235556 78999999996442   


Q ss_pred             HHhhccccccCCccEEEEcCCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ++.   ...+++|++|+|++..
T Consensus       219 li~---~~~vk~GavVIDVgi~  237 (295)
T PRK14174        219 FIT---ADMVKPGAVVIDVGIN  237 (295)
T ss_pred             ccC---HHHcCCCCEEEEeecc
Confidence            222   2457899999999743

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.99  E-value=0.027  Score=49.87  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      .+..||.|||+|.+|+.+++.|...|. +++++|.+.
T Consensus        19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            346799999999999999999999997 799999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=95.98  E-value=0.02  Score=56.92  Aligned_cols=63  Identities=19%  Similarity=0.300  Sum_probs=46.7

Q ss_pred             eEEEEcccHHHHH-HHHHHHHcCCeEEEEcCCCCc-HHHHHhCCCceec-ChhhHhhcCCCEEEEec
Q 044593           33 KIAVIGFGNFGQF-LAKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFFA-DLNDLCELHPDVVLLST   96 (335)
Q Consensus        33 kI~IIG~G~mG~s-iA~~L~~~G~~V~~~dr~~~~-~~~a~~~g~~~~~-~~~~~~~~~aDvVIlav   96 (335)
                      +|.|||.|..|.+ +|+.|++.|++|+++|.+... .+..++.|+.... ...+.+ .++|+||++.
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~-~~~d~vV~sp   66 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENL-DDADVVVVSA   66 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHC-CCCCEEEECC
Confidence            5889999999998 999999999999999976542 2334556776532 122334 6799999854

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.96  E-value=0.017  Score=57.38  Aligned_cols=64  Identities=16%  Similarity=0.082  Sum_probs=46.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH----HHHHhCCCceec--ChhhHhhcCCCEEEEe
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP----AVRQQLNAPFFA--DLNDLCELHPDVVLLS   95 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~----~~a~~~g~~~~~--~~~~~~~~~aDvVIla   95 (335)
                      ++||+|+|+|.-|.+.++.|.+.|++|+++|.++...    ......++....  ...+.. .++|+||.+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~-~~~d~vV~S   76 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDL-AEFDLVVKS   76 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhcc-ccCCEEEEC
Confidence            7899999999999999999999999999999776542    112234544321  111333 679999985

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=95.91  E-value=0.017  Score=55.33  Aligned_cols=63  Identities=24%  Similarity=0.377  Sum_probs=44.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-HhCCC-ceecC---hhhHhhcCCCEEEE
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-QQLNA-PFFAD---LNDLCELHPDVVLL   94 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-~~~g~-~~~~~---~~~~~~~~aDvVIl   94 (335)
                      +++|||||-|..|..++.+-...|++|++.|.+++.-... .+.-+ ...+|   +.+++ +.||+|-.
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela-~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELA-AKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHH-hhCCEEEE
Confidence            4689999999999999999999999999999988643211 11111 12222   34555 67888754

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.90  E-value=0.024  Score=56.32  Aligned_cols=65  Identities=14%  Similarity=0.171  Sum_probs=47.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc--HHHHHh--CCCceec--ChhhHhhcCCCEEEEec
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS--PAVRQQ--LNAPFFA--DLNDLCELHPDVVLLST   96 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~--~~~a~~--~g~~~~~--~~~~~~~~~aDvVIlav   96 (335)
                      .-.|+|||.|..|.++|+.|.+.|++|+++|.++..  .+...+  .|+....  ...+.+ .++|+||++-
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-~~~d~vV~sp   76 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELL-VQASEIIISP   76 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHh-cCCCEEEECC
Confidence            457999999999999999999999999999987542  222333  3765532  123334 6899998854

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=95.87  E-value=0.027  Score=53.93  Aligned_cols=90  Identities=18%  Similarity=0.211  Sum_probs=56.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC-CeEEE-EcCC--CCcHHHHHhC----CC-------------------ce--ecChh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH-HTLLV-HSRS--DHSPAVRQQL----NA-------------------PF--FADLN   82 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G-~~V~~-~dr~--~~~~~~a~~~----g~-------------------~~--~~~~~   82 (335)
                      +||+|.|+|.||..+.+.+.+.+ +++.+ .|+.  .+......+.    |-                   ..  ..++.
T Consensus         3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~~   82 (334)
T PRK08955          3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAIA   82 (334)
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCChh
Confidence            69999999999999999987654 56644 3433  2233333222    11                   01  11444


Q ss_pred             hHhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           83 DLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        83 ~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ++.+.++|+||.|+......+....    ++..|+.++|+++.
T Consensus        83 ~~~w~gvDiVle~tG~~~s~~~a~~----hl~aGak~V~iSap  121 (334)
T PRK08955         83 DTDWSGCDVVIEASGVMKTKALLQA----YLDQGVKRVVVTAP  121 (334)
T ss_pred             hCCccCCCEEEEccchhhcHHHHHH----HHHCCCEEEEECCC
Confidence            4433589999999987765555543    35577888887654

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=95.85  E-value=0.022  Score=56.27  Aligned_cols=63  Identities=16%  Similarity=0.189  Sum_probs=45.8

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-HH----HHH-hCCCceec-ChhhHhhcCCCEEEEec
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-PA----VRQ-QLNAPFFA-DLNDLCELHPDVVLLST   96 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~~----~a~-~~g~~~~~-~~~~~~~~~aDvVIlav   96 (335)
                      ||.|||.|..|.++|+.|.+.|++|+++|.++.. ..    ... ..|+.... ...+.+ .++|+||.+.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~-~~~d~vv~sp   70 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDL-NNADLVVKSP   70 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHh-ccCCEEEECC
Confidence            5899999999999999999999999999987542 11    122 34775432 113334 6899998855

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.85  E-value=0.049  Score=52.03  Aligned_cols=67  Identities=19%  Similarity=0.216  Sum_probs=47.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHH-cC-CeEEEEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFAR-HH-HTLLVHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~-~G-~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~   98 (335)
                      ...+|.|+|+|.+|...+..+++ .| .+|+++|++++..+.+++.+.....  ++... ..+|+||-|+..
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~--~~~~~~~g~d~viD~~G~  232 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLI--DDIPEDLAVDHAFECVGG  232 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeeh--hhhhhccCCcEEEECCCC
Confidence            46799999999999988887776 44 5899999998887777665543211  12210 247888888873

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.85  E-value=0.019  Score=59.00  Aligned_cols=70  Identities=23%  Similarity=0.201  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC---------------------cHHHHHhCCCceec------C-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH---------------------SPAVRQQLNAPFFA------D-   80 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~---------------------~~~~a~~~g~~~~~------~-   80 (335)
                      ..+++|+|||.|.+|.+.|..|++.|++|+++|+.+.                     ..+.+.+.|+....      + 
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~  214 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI  214 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence            4678999999999999999999999999999996532                     22446677774321      1 


Q ss_pred             -hhhHhhcCCCEEEEecCch
Q 044593           81 -LNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        81 -~~~~~~~~aDvVIlavp~~   99 (335)
                       ..+.. .++|+||+|+...
T Consensus       215 ~~~~~~-~~~D~Vi~AtG~~  233 (564)
T PRK12771        215 TLEQLE-GEFDAVFVAIGAQ  233 (564)
T ss_pred             CHHHHH-hhCCEEEEeeCCC
Confidence             22233 4689999998644

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.84  E-value=0.026  Score=60.49  Aligned_cols=67  Identities=21%  Similarity=0.195  Sum_probs=49.8

Q ss_pred             CCCCeEEEEcccHHHHHH-HHHHHHcCCeEEEEcCCCCc-HHHHHhCCCceec-ChhhHhhcCCCEEEEec
Q 044593           29 STSLKIAVIGFGNFGQFL-AKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFFA-DLNDLCELHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~si-A~~L~~~G~~V~~~dr~~~~-~~~a~~~g~~~~~-~~~~~~~~~aDvVIlav   96 (335)
                      +++++|.|||+|..|.+. |+.|.+.|++|+++|.++.. .+...+.|+.... ...+.+ .++|+||++-
T Consensus         2 ~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~-~~~d~vV~Sp   71 (809)
T PRK14573          2 MKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHV-PEDAVVVYSS   71 (809)
T ss_pred             CCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHc-CCCCEEEECC
Confidence            345679999999999997 99999999999999987542 3334566876532 223444 6799999854

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.84  E-value=0.014  Score=54.71  Aligned_cols=65  Identities=15%  Similarity=0.214  Sum_probs=46.3

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp   97 (335)
                      |+|.|+| .|.+|..++..|.+.|++|++++|+++........++..    ..+   +.+++ +.+|+||.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~-~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAV-AGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHH-hCCCEEEEece
Confidence            5899999 699999999999999999999999875432222224321    122   33444 67899998763

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02427 UDP-apiose/xylose synthase

Probab=95.80  E-value=0.023  Score=55.17  Aligned_cols=68  Identities=19%  Similarity=0.235  Sum_probs=46.4

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHhC-------CCce----ecC---hhhHhhcCCCE
Q 044593           28 KSTSLKIAVIG-FGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQL-------NAPF----FAD---LNDLCELHPDV   91 (335)
Q Consensus        28 ~~~~~kI~IIG-~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~~~-------g~~~----~~~---~~~~~~~~aDv   91 (335)
                      ..+.|||.|.| .|.+|+.++..|.++ |++|+++|++..........       ++..    ..+   ..+++ .++|+
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~-~~~d~   89 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLI-KMADL   89 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHh-hcCCE
Confidence            34568999999 699999999999998 59999999876543322211       1211    112   23344 67999


Q ss_pred             EEEec
Q 044593           92 VLLST   96 (335)
Q Consensus        92 VIlav   96 (335)
                      ||-+.
T Consensus        90 ViHlA   94 (386)
T PLN02427         90 TINLA   94 (386)
T ss_pred             EEEcc
Confidence            99755

>PRK07236 hypothetical protein; Provisional

Probab=95.80  E-value=0.014  Score=56.68  Aligned_cols=38  Identities=26%  Similarity=0.195  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .|+.++|.|||.|..|.++|..|++.|++|+++++.+.
T Consensus         3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          3 HMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            46678999999999999999999999999999998763

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=95.78  E-value=0.057  Score=51.19  Aligned_cols=47  Identities=15%  Similarity=0.054  Sum_probs=41.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCCCcHHHHHhCCCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSDHSPAVRQQLNAP   76 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~~~~~~a~~~g~~   76 (335)
                      ...+|.|+|.|.+|...+..++..|.+ |++.+++++..+.+++.|+.
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~  210 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD  210 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC
Confidence            467999999999999999999999988 99999988887778777763

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.78  E-value=0.022  Score=42.43  Aligned_cols=34  Identities=35%  Similarity=0.417  Sum_probs=31.4

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ||.|||.|.+|.-+|..|.+.|.+|+++++++..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            6899999999999999999999999999988753

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.77  E-value=0.014  Score=57.20  Aligned_cols=33  Identities=36%  Similarity=0.344  Sum_probs=31.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      .+|.|||.|.+|.++|..|++.|++|+++|+++
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            489999999999999999999999999999986

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=95.77  E-value=0.058  Score=51.30  Aligned_cols=89  Identities=17%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhhc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSI  108 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l  108 (335)
                      .+.+|.|+|.|.+|...+..++..|.+|++.+++++..+.++++|+...-+..+......|+++.++.... ....++  
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~~~~~--  242 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGLVPPALE--  242 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHHHHHHHH--
Confidence            46799999999999988888888899999999999888889999985432211111134687777765432 222222  


Q ss_pred             cccccCCccEEEEcC
Q 044593          109 PFQRLKRSTLFVDVL  123 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~  123 (335)
                         .++++..++-++
T Consensus       243 ---~l~~~G~~v~~G  254 (329)
T TIGR02822       243 ---ALDRGGVLAVAG  254 (329)
T ss_pred             ---hhCCCcEEEEEe
Confidence               345555555554

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.74  E-value=0.029  Score=55.89  Aligned_cols=64  Identities=23%  Similarity=0.276  Sum_probs=46.6

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-H----HHHHhCCCceecC--hh-----hHhhcCCCEEEEecC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-P----AVRQQLNAPFFAD--LN-----DLCELHPDVVLLSTS   97 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~----~~a~~~g~~~~~~--~~-----~~~~~~aDvVIlavp   97 (335)
                      ||.|||.|..|.+.|+.|.+.|++|.++|+++.. .    ....+.|+.....  ..     ... .++|+||.+..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~-~~~d~vv~s~g   77 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWL-DQPDLVVVSPG   77 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHh-hcCCEEEECCC
Confidence            7999999999999999999999999999987642 2    1234567754321  11     233 67999998543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.70  E-value=0.047  Score=54.77  Aligned_cols=36  Identities=39%  Similarity=0.507  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      ...++|+|||.|..|.+.|..|++.|++|+++++.+
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~  176 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD  176 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            456899999999999999999999999999999864

>PLN00198 anthocyanidin reductase; Provisional

Probab=95.69  E-value=0.044  Score=52.10  Aligned_cols=41  Identities=17%  Similarity=0.213  Sum_probs=35.0

Q ss_pred             ccCCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           26 YVKSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        26 ~~~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ++++.+++|.|.| .|.+|+.++..|.+.|++|.+..|+...
T Consensus         4 ~~~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~   45 (338)
T PLN00198          4 LTPTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN   45 (338)
T ss_pred             ccCCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            3456688999999 7999999999999999999888777643

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=95.67  E-value=0.045  Score=54.22  Aligned_cols=68  Identities=19%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             CeEEEEcccHH-HHHHHHHHHHc-----CCeEEEEcCCCCcHHH--------HHhCCC----ceecChhhHhhcCCCEEE
Q 044593           32 LKIAVIGFGNF-GQFLAKAFARH-----HHTLLVHSRSDHSPAV--------RQQLNA----PFFADLNDLCELHPDVVL   93 (335)
Q Consensus        32 ~kI~IIG~G~m-G~siA~~L~~~-----G~~V~~~dr~~~~~~~--------a~~~g~----~~~~~~~~~~~~~aDvVI   93 (335)
                      |||+|||.|.. .-.+...|...     +-+|+.+|.+++..+.        +.+.|.    ..++|.++++ .+||+||
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al-~gADfVi   79 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAI-IDADFVI   79 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHh-CCCCEEE
Confidence            69999999873 33344555443     2489999999876542        223343    3578888888 8999999


Q ss_pred             EecCchh
Q 044593           94 LSTSILS  100 (335)
Q Consensus        94 lavp~~~  100 (335)
                      .+.-...
T Consensus        80 ~~irvGg   86 (425)
T cd05197          80 NQFRVGG   86 (425)
T ss_pred             EeeecCC
Confidence            9886554

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.65  E-value=0.2  Score=47.38  Aligned_cols=188  Identities=13%  Similarity=0.141  Sum_probs=108.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCc---HHHHHhCCCc---------------------eecChhhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHS---PAVRQQLNAP---------------------FFADLNDL   84 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~---~~~a~~~g~~---------------------~~~~~~~~   84 (335)
                      .+.++.++|+|...-.+|.-+...| +++-.++|....   ...+.+.+-.                     +..+.+++
T Consensus         3 ~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~   82 (431)
T COG4408           3 NMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQA   82 (431)
T ss_pred             cccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHh
Confidence            4678999999999999999999887 577777765432   2233333211                     12345555


Q ss_pred             hhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCc--hHHHHHHhhCCCCCceEeccccCCCCCc--cc-cc
Q 044593           85 CELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKE--FPRNLFLKYLPQDFDILCTHPMFGPESA--KS-SW  159 (335)
Q Consensus        85 ~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~--~~~~~l~~~l~~~~~~v~~HPmaG~~~~--~~-~~  159 (335)
                      . .+-+-+|+|||.++..+++++|.-..++.=..++-++++-+  ..+..+...++.++.+++.----|..+-  ++ ..
T Consensus        83 ~-~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~~~p~  161 (431)
T COG4408          83 V-GDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDAEQPN  161 (431)
T ss_pred             h-chhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeecccCcc
Confidence            5 67899999999999999999985333332222332322221  2333333344556677765433332210  00 00


Q ss_pred             CCCcceecc-cccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHh--hhhHHHHH
Q 044593          160 ENLPFMYDK-VRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGS--QFVTHTMG  218 (335)
Q Consensus       160 ~g~~~i~~~-~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~--s~lph~la  218 (335)
                      +..+..+.. ..+++...+...++.+..+++..|..+..+....|.+.-..+  -|-|.+++
T Consensus       162 ~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlfln  223 (431)
T COG4408         162 RALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLN  223 (431)
T ss_pred             hHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhh
Confidence            000001100 012433333456778899999999999998777666543332  25566654

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.65  E-value=0.034  Score=53.78  Aligned_cols=36  Identities=22%  Similarity=0.212  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      .+..||.|||+|.+|+.++..|...|. +++++|.+.
T Consensus        26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            346799999999999999999999997 788888774

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=95.64  E-value=0.055  Score=51.42  Aligned_cols=67  Identities=18%  Similarity=0.147  Sum_probs=50.1

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH---HHHhCC-C-----------ceecChhhHhhcCCCEEE
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA---VRQQLN-A-----------PFFADLNDLCELHPDVVL   93 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~---~a~~~g-~-----------~~~~~~~~~~~~~aDvVI   93 (335)
                      .+++|.|-| .|-||+++.+.|.++||.|.+.-|+++..+   .+.++. .           ....+...++ .+||.||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai-~gcdgVf   83 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAI-DGCDGVF   83 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHH-hCCCEEE
Confidence            678999999 599999999999999999999999986532   233331 1           1234556666 8999999


Q ss_pred             E-ecC
Q 044593           94 L-STS   97 (335)
Q Consensus        94 l-avp   97 (335)
                      = |.|
T Consensus        84 H~Asp   88 (327)
T KOG1502|consen   84 HTASP   88 (327)
T ss_pred             EeCcc
Confidence            5 444

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.63  E-value=0.04  Score=53.01  Aligned_cols=69  Identities=25%  Similarity=0.310  Sum_probs=44.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc----------CCeEE-EEcCCCC-------cH----HHHHhCCCc-------eecCh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH----------HHTLL-VHSRSDH-------SP----AVRQQLNAP-------FFADL   81 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~----------G~~V~-~~dr~~~-------~~----~~a~~~g~~-------~~~~~   81 (335)
                      .+||+|+|+|.||+.+++.|.+.          +.+|+ ++|++..       ..    +.+.+.+..       .+.+.
T Consensus         2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~   81 (341)
T PRK06270          2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG   81 (341)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence            46899999999999999999765          35654 5575321       11    112222321       12356


Q ss_pred             hhHhh-cCCCEEEEecCch
Q 044593           82 NDLCE-LHPDVVLLSTSIL   99 (335)
Q Consensus        82 ~~~~~-~~aDvVIlavp~~   99 (335)
                      .+++. .+.|+||.|||..
T Consensus        82 ~ell~~~~~DvVvd~T~s~  100 (341)
T PRK06270         82 LEVIRSVDADVVVEATPTN  100 (341)
T ss_pred             HHHhhccCCCEEEECCcCc
Confidence            66551 3689999999964

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.62  E-value=0.016  Score=47.88  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=30.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      ..||+|+|+|.+|+.++..|...|. +++++|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4689999999999999999999998 799999874

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.57  E-value=0.031  Score=53.58  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=33.0

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .++|||.|.| +|-+|+.++..|.+.|++|+++|+...
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~   50 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFST   50 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4568999999 699999999999999999999998653

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.56  E-value=0.057  Score=50.65  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=32.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      +.++|.|.| +|-+|+.++..|.+.|++|.+++|+...
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~   40 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPND   40 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence            457999999 6999999999999999999999887653

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.55  E-value=0.03  Score=52.62  Aligned_cols=31  Identities=16%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS   63 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~   63 (335)
                      ||.|||+|.+|+.+|+.|...|. +++++|.+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            69999999999999999999997 78888764

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.54  E-value=0.054  Score=54.37  Aligned_cols=120  Identities=13%  Similarity=0.152  Sum_probs=72.8

Q ss_pred             hhHhhhhhcCCCccccchhhccc-CCCCCeEEEEcc----------cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC
Q 044593            5 HVIRAIDAAQPFDYESQLHTQYV-KSTSLKIAVIGF----------GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL   73 (335)
Q Consensus         5 ~~~r~~~~~~~~~~~~~~~~~~~-~~~~~kI~IIG~----------G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~   73 (335)
                      ...++++..|+...-.++...+. .....||+|+|+          ..-...++..|.+.|.+|.+||+--...+.....
T Consensus       297 ~~~~~iN~~~~~~vv~~~~~~l~~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~  376 (473)
T PLN02353        297 KQVIKMNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDL  376 (473)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhcccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHh
Confidence            34556666665422122222221 246789999997          3356788999999999999999874332211111


Q ss_pred             ----------------------CCceecChhhHhhcCCCEEEEecCchhHHHH-HhhccccccCCccEEEEcCCCC
Q 044593           74 ----------------------NAPFFADLNDLCELHPDVVLLSTSILSTQSV-LKSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus        74 ----------------------g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v-l~~l~~~~l~~~~iVvd~~SvK  126 (335)
                                            ++....+..+++ +++|+||++|+-...... ++.+. ..+++..+|+|.-++-
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~aD~vvi~t~~~ef~~l~~~~~~-~~m~~~~~viD~rn~l  450 (473)
T PLN02353        377 SMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEAT-KGAHGICILTEWDEFKTLDYQKIY-DNMQKPAFVFDGRNVL  450 (473)
T ss_pred             hcccccccccccccccccccccceeeeCCHHHHh-cCCCEEEECCCChHhcccCHHHHH-HhccCCCEEEECCCCC
Confidence                                  123344555666 899999999998765432 22221 2233445899987663

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=95.54  E-value=0.075  Score=52.37  Aligned_cols=73  Identities=16%  Similarity=0.120  Sum_probs=50.4

Q ss_pred             CCCCeEEEEcccHHHHHH--HHHHHHc----CCeEEEEcCCCCcHH----H----HHhCCC----ceecChhhHhhcCCC
Q 044593           29 STSLKIAVIGFGNFGQFL--AKAFARH----HHTLLVHSRSDHSPA----V----RQQLNA----PFFADLNDLCELHPD   90 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~si--A~~L~~~----G~~V~~~dr~~~~~~----~----a~~~g~----~~~~~~~~~~~~~aD   90 (335)
                      |+.+||+|||.|..+..-  ...+...    +.++..+|.+++..+    .    .++.|.    ..++|.++++ .+||
T Consensus         1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl-~gAd   79 (442)
T COG1486           1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREAL-EGAD   79 (442)
T ss_pred             CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHh-cCCC
Confidence            457899999999876432  2222222    348999999987655    1    223444    3467888888 8999


Q ss_pred             EEEEecCchhHH
Q 044593           91 VVLLSTSILSTQ  102 (335)
Q Consensus        91 vVIlavp~~~~~  102 (335)
                      +||.+.-+....
T Consensus        80 fVi~~~rvG~l~   91 (442)
T COG1486          80 FVITQIRVGGLE   91 (442)
T ss_pred             EEEEEEeeCCcc
Confidence            999998776543

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=95.51  E-value=0.036  Score=51.81  Aligned_cols=88  Identities=14%  Similarity=0.177  Sum_probs=63.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcccc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQ  111 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~~  111 (335)
                      +-+.|.|+|-+|...|.+|+..|..|++...+|-..-.|.-.|..++ .+++++ .++|++|.+|--..+  +..+. ..
T Consensus       215 Kv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~-~e~difVTtTGc~di--i~~~H-~~  289 (434)
T KOG1370|consen  215 KVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAI-REVDIFVTTTGCKDI--ITGEH-FD  289 (434)
T ss_pred             cEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhh-hcCCEEEEccCCcch--hhHHH-HH
Confidence            34456699999999999999999999999999843322444466654 567777 899999998875543  12222 23


Q ss_pred             ccCCccEEEEcCC
Q 044593          112 RLKRSTLFVDVLS  124 (335)
Q Consensus       112 ~l~~~~iVvd~~S  124 (335)
                      .+++++||.+++-
T Consensus       290 ~mk~d~IvCN~Gh  302 (434)
T KOG1370|consen  290 QMKNDAIVCNIGH  302 (434)
T ss_pred             hCcCCcEEecccc
Confidence            4678889988763

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.50  E-value=0.043  Score=53.38  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS   63 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~   63 (335)
                      .+..+|.|||+|.+|+.++..|...|. +++++|.+
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            346799999999999999999999996 89999887

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.49  E-value=0.029  Score=55.19  Aligned_cols=61  Identities=18%  Similarity=0.250  Sum_probs=42.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEe
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIla   95 (335)
                      |+|.|+|+|.-|.++|+.|. .|++|+++|.++.... ..+.|+... ..+.....++|+||.+
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~~~~~~~~~~d~vv~s   61 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-PSNDFDPNKSDLEIPS   61 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-cHHHcCcCCCCEEEEC
Confidence            68999999999999999999 9999999996543222 223466553 2111110368988875

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.49  E-value=0.062  Score=50.57  Aligned_cols=86  Identities=13%  Similarity=0.057  Sum_probs=55.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKS  107 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~  107 (335)
                      ...++.|+|+|.+|...+..++..|.+ |.++|++++..+.+....+...  ..+.- ..+|+||-|+.... ....++.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~--~~~~~-~g~Dvvid~~G~~~~~~~~~~~  220 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDP--EKDPR-RDYRAIYDASGDPSLIDTLVRR  220 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccCh--hhccC-CCCCEEEECCCCHHHHHHHHHh
Confidence            356899999999999999888888986 6677887766655554432211  11122 45899999888653 3444443


Q ss_pred             ccccccCCccEEEEcC
Q 044593          108 IPFQRLKRSTLFVDVL  123 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~  123 (335)
                           ++++..++-++
T Consensus       221 -----l~~~G~iv~~G  231 (308)
T TIGR01202       221 -----LAKGGEIVLAG  231 (308)
T ss_pred             -----hhcCcEEEEEe
Confidence                 34555555554

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.48  E-value=0.093  Score=47.36  Aligned_cols=78  Identities=14%  Similarity=0.178  Sum_probs=56.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC--cHHHHHhCCCceec---ChhhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH--SPAVRQQLNAPFFA---DLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~--~~~~a~~~g~~~~~---~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      .+.++|.|||.|.+|..=+..|.+.|.+|+++.+.-.  -.+.+....+....   +..++  .++++||.||....+..
T Consensus        23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl--~g~~LViaATdD~~vN~  100 (223)
T PRK05562         23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFI--KDKHLIVIATDDEKLNN  100 (223)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHh--CCCcEEEECCCCHHHHH
Confidence            4578999999999999999999999999999977643  22333322333211   22333  78999999999888776


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      -+...
T Consensus       101 ~I~~~  105 (223)
T PRK05562        101 KIRKH  105 (223)
T ss_pred             HHHHH
Confidence            66555

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=95.46  E-value=0.02  Score=55.93  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=31.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      |+|.|||.|.+|.++|..|++.|++|+++|++..
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            5899999999999999999999999999999753

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.46  E-value=0.058  Score=53.47  Aligned_cols=66  Identities=20%  Similarity=0.168  Sum_probs=46.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCCceec--ChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNAPFFA--DLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~~~~~--~~~~~~~~~aDvVIlav   96 (335)
                      ..++|.|||.|..|.+.++.|++.|++|+++|.++... ....+.|+....  .....+ ..+|+||.+-
T Consensus         5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~-~~~d~vv~sp   73 (438)
T PRK03806          5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWL-LAADLIVASP   73 (438)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHh-cCCCEEEECC
Confidence            35689999999999999999999999999999765432 111233765432  122334 5789777643

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=95.44  E-value=0.024  Score=54.99  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      ....|||.|.| .|.+|+.++..|.+.|++|++++|..
T Consensus        18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            34678999999 59999999999999999999999864

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.43  E-value=0.11  Score=46.69  Aligned_cols=91  Identities=22%  Similarity=0.245  Sum_probs=59.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---c--Chhh-H---hhcCCCEEEEecCc-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---A--DLND-L---CELHPDVVLLSTSI-   98 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~--~~~~-~---~~~~aDvVIlavp~-   98 (335)
                      ....+|.|+|.|.+|..++..++..|.+|++.+++++..+.+.+.|....   .  +..+ +   .....|++|-+++. 
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            34679999999889999999999999999999998877666666654311   1  1111 0   01357888888776 


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ......++.+     +++..+++++.
T Consensus       213 ~~~~~~~~~l-----~~~G~~v~~~~  233 (271)
T cd05188         213 ETLAQALRLL-----RPGGRIVVVGG  233 (271)
T ss_pred             HHHHHHHHhc-----ccCCEEEEEcc
Confidence            4444444433     34445555543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.42  E-value=0.036  Score=49.45  Aligned_cols=40  Identities=13%  Similarity=0.185  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593           28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP   67 (335)
Q Consensus        28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~   67 (335)
                      ++++++|.|.| .|.+|..+++.|.+.|++|++++|++...
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~   42 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAA   42 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHH
Confidence            34567899999 59999999999999999999999997643

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.39  E-value=0.04  Score=56.31  Aligned_cols=38  Identities=16%  Similarity=0.140  Sum_probs=33.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP   67 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~   67 (335)
                      .++.|.|.| .|.+|..+++.|.+.|++|++++|+.+..
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl  117 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA  117 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence            456788999 59999999999999999999999997654

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=95.39  E-value=0.036  Score=53.60  Aligned_cols=88  Identities=14%  Similarity=0.216  Sum_probs=55.9

Q ss_pred             CeEEEEc-ccHHHHHHHHHHH-HcCCe---EEEEcCCC--CcHHHHHhCCCceecCh-h-hHhhcCCCEEEEecCchhHH
Q 044593           32 LKIAVIG-FGNFGQFLAKAFA-RHHHT---LLVHSRSD--HSPAVRQQLNAPFFADL-N-DLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~-~~G~~---V~~~dr~~--~~~~~a~~~g~~~~~~~-~-~~~~~~aDvVIlavp~~~~~  102 (335)
                      ++|+|+| .|.+|..+...|. +..+.   +..+....  ...-........ ..+. . +.. .++|++|.|.+.+...
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~-v~~~~~~~~~-~~vDivffa~g~~~s~   78 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGT-LQDAFDIDAL-KALDIIITCQGGDYTN   78 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcce-EEcCcccccc-cCCCEEEEcCCHHHHH
Confidence            5899999 5999999999998 66664   34443322  111101111111 1122 1 123 6899999999988777


Q ss_pred             HHHhhccccccCCc--cEEEEcCCC
Q 044593          103 SVLKSIPFQRLKRS--TLFVDVLSV  125 (335)
Q Consensus       103 ~vl~~l~~~~l~~~--~iVvd~~Sv  125 (335)
                      ++...+.    +.|  ++|+|.+|.
T Consensus        79 ~~~p~~~----~aG~~~~VIDnSSa   99 (366)
T TIGR01745        79 EIYPKLR----ESGWQGYWIDAASS   99 (366)
T ss_pred             HHHHHHH----hCCCCeEEEECChh
Confidence            7777653    467  789999874

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.38  E-value=0.045  Score=52.44  Aligned_cols=39  Identities=23%  Similarity=0.293  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      .+..|+|.|.| .|.+|+.+++.|.+.|++|++.+|+...
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~   46 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAK   46 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            45688999999 6999999999999999999998887643

>PRK08163 salicylate hydroxylase; Provisional

Probab=95.37  E-value=0.023  Score=55.11  Aligned_cols=36  Identities=19%  Similarity=0.176  Sum_probs=33.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      +.++|.|||.|..|.++|..|++.|++|+++++++.
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            357899999999999999999999999999998764

>PRK06753 hypothetical protein; Provisional

Probab=95.37  E-value=0.022  Score=54.84  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=32.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      |+|.|||.|..|.++|..|++.|++|+++++++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            6899999999999999999999999999998864

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=95.37  E-value=0.043  Score=59.67  Aligned_cols=70  Identities=23%  Similarity=0.169  Sum_probs=50.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc---------------------HHHHHhCCCcee--------c
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS---------------------PAVRQQLNAPFF--------A   79 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~---------------------~~~a~~~g~~~~--------~   79 (335)
                      .+++||+|||.|.-|.+.|..|.+.||+|++|++.+..                     .+..++.|+.+.        -
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~di  383 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTA  383 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEE
Confidence            45789999999999999999999999999999986421                     112344566421        1


Q ss_pred             ChhhHhhcCCCEEEEecCc
Q 044593           80 DLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        80 ~~~~~~~~~aDvVIlavp~   98 (335)
                      +.+++...++|.||+||-.
T Consensus       384 t~~~l~~~~yDAV~LAtGA  402 (944)
T PRK12779        384 TLEDLKAAGFWKIFVGTGA  402 (944)
T ss_pred             eHHHhccccCCEEEEeCCC
Confidence            3444431268999999854

>PRK14031 glutamate dehydrogenase; Provisional

Probab=95.33  E-value=0.1  Score=51.71  Aligned_cols=34  Identities=18%  Similarity=0.174  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEE-Ec
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLV-HS   61 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~-~d   61 (335)
                      +.++++|+|.|+|++|...|+.|.+.|.+|++ .|
T Consensus       225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD  259 (444)
T PRK14031        225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD  259 (444)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            35688999999999999999999999999876 56

>PRK06182 short chain dehydrogenase; Validated

Probab=95.32  E-value=0.045  Score=50.23  Aligned_cols=46  Identities=17%  Similarity=0.100  Sum_probs=36.9

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNA   75 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~   75 (335)
                      ++++|.|.| .|.+|..+++.|.+.|++|++.+|+++..+.....++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~   48 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGV   48 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCC
Confidence            457899999 5999999999999999999999999765543333343

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=95.32  E-value=0.046  Score=53.12  Aligned_cols=63  Identities=29%  Similarity=0.322  Sum_probs=43.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCC-ceecC---hhhHhhcCCCEEEE
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNA-PFFAD---LNDLCELHPDVVLL   94 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~-~~~~~---~~~~~~~~aDvVIl   94 (335)
                      +++|+|||.|..|..++.+.++.|++|+++|.+++.. ....+.-+ ....|   +.+++ +.||+|..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a-~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELA-EQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHH-hcCCEEEe
Confidence            4689999999999999999999999999999887542 21111111 11233   33445 68998754

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.29  E-value=0.034  Score=52.23  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=47.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecChhhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADLNDL   84 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~~~~   84 (335)
                      .+..++|+|+|.+|.+.+...+.+|. +|+++|.|++..+.+++.|+...-++.++
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~  247 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDL  247 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhc
Confidence            45789999999999999999999996 89999999999999999999765555543

>PLN02214 cinnamoyl-CoA reductase

Probab=95.28  E-value=0.059  Score=51.55  Aligned_cols=37  Identities=16%  Similarity=0.246  Sum_probs=32.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ++++|.|.|. |.+|+.++..|.++|++|++.+|+.+.
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~   46 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD   46 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence            5678999995 999999999999999999999987653

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.28  E-value=0.064  Score=52.85  Aligned_cols=115  Identities=14%  Similarity=0.157  Sum_probs=72.9

Q ss_pred             chhhhHhhhhhcCCCccccchhhcccCCCCCeEEEEcc----------cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH
Q 044593            2 PLRHVIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGF----------GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ   71 (335)
Q Consensus         2 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~----------G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~   71 (335)
                      |+-...|+++-.|+...-.++...+......+|+|+|+          ..-.-.++..|.+.|.+|.+||+.-..... .
T Consensus       284 ~l~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~-~  362 (411)
T TIGR03026       284 ELIEAAREINDSQPDYVVEKILDLLGPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEV-K  362 (411)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhhcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhh-h
Confidence            45566777777776432223333333456789999997          224668899999999999999987533221 1


Q ss_pred             hCCCceecChhhHhhcCCCEEEEecCchhHHHH-HhhccccccCCccEEEEc
Q 044593           72 QLNAPFFADLNDLCELHPDVVLLSTSILSTQSV-LKSIPFQRLKRSTLFVDV  122 (335)
Q Consensus        72 ~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v-l~~l~~~~l~~~~iVvd~  122 (335)
                      ..+  ...+..+.+ +++|+||++|+-....++ .+.+. ..+ ...+|+|.
T Consensus       363 ~~~--~~~~~~~~~-~~ad~~v~~t~~~~~~~~~~~~~~-~~~-~~~~v~D~  409 (411)
T TIGR03026       363 GLP--LIDDLEEAL-KGADALVILTDHDEFKDLDLEKIK-DLM-KGKVVVDT  409 (411)
T ss_pred             hcc--cCCCHHHHH-hCCCEEEEecCCHHHhccCHHHHH-Hhc-CCCEEEeC
Confidence            111  235666777 899999999997765432 22332 122 23478885

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=95.28  E-value=0.069  Score=50.67  Aligned_cols=32  Identities=22%  Similarity=0.298  Sum_probs=29.0

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      ||.|||+|.+|..+++.|...|. +++++|.+.
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~   33 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT   33 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence            68999999999999999999997 789988763

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=95.23  E-value=0.028  Score=54.45  Aligned_cols=38  Identities=29%  Similarity=0.261  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .++...|.|||.|..|.++|..|.+.|++|+++|+++.
T Consensus         4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            34556799999999999999999999999999998753

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.23  E-value=0.022  Score=52.98  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=49.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHhC---------CCce-ecChhhH---hhcCCCEEEEe
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQL---------NAPF-FADLNDL---CELHPDVVLLS   95 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~~~---------g~~~-~~~~~~~---~~~~aDvVIla   95 (335)
                      ..||++||.|.+--+.-......  |..|.++|++++..+.+++.         ++.+ +.+..+.   + .++|+|++|
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-~~~DvV~lA  199 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-KEYDVVFLA  199 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEEEE-
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-ccCCEEEEh
Confidence            35999999999987766555554  45789999999876544321         2222 1222111   2 579999999


Q ss_pred             cCch----hHHHHHhhccccccCCccEEEE
Q 044593           96 TSIL----STQSVLKSIPFQRLKRSTLFVD  121 (335)
Q Consensus        96 vp~~----~~~~vl~~l~~~~l~~~~iVvd  121 (335)
                      .-..    .-.+++..+. ..+++|+.|+-
T Consensus       200 alVg~~~e~K~~Il~~l~-~~m~~ga~l~~  228 (276)
T PF03059_consen  200 ALVGMDAEPKEEILEHLA-KHMAPGARLVV  228 (276)
T ss_dssp             TT-S----SHHHHHHHHH-HHS-TTSEEEE
T ss_pred             hhcccccchHHHHHHHHH-hhCCCCcEEEE
Confidence            8777    6788999985 67889987764

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=95.22  E-value=0.0012  Score=62.32  Aligned_cols=128  Identities=9%  Similarity=-0.101  Sum_probs=87.2

Q ss_pred             hhhcccCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH
Q 044593           22 LHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        22 ~~~~~~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      ++....-....|+||.|.|.||.+........|+.+++|-+.. ..+.+.+.++...+...+.+ +.. +++.|...-..
T Consensus       353 lS~laivdSw~klGI~p~~hmicstplfri~~Gvsey~f~~pg-lld~~i~~ai~~~sf~~Ddl-Efv-v~~r~wS~~vs  429 (480)
T KOG2380|consen  353 LSLLAIVDSWFKLGIDPYDHMICSTPLFRIFLGVSEYLFLKPG-LLDQTIDAAIHDKSFIKDDL-EFV-VSAREWSSVVS  429 (480)
T ss_pred             eeeEEeecchhccccccCCceeecccceeEEeccEEEEecCCc-hHHHHHHHhhccccccchhH-HHH-HHHhHHhhhhh
Confidence            3444444567899999999999999988888899999887653 34445556666555444443 222 44555555555


Q ss_pred             HHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGP  152 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~  152 (335)
                      ...++.++++.++..+.+.++-+.+..+-+.+-+.++.+....+.|||+|+
T Consensus       430 ~k~f~~ykkqfl~~q~~F~p~l~ea~~~gN~mi~tll~~~~~~~~~~~~~~  480 (480)
T KOG2380|consen  430 FKNFDIYKKQFLSVQKFFEPMLPEANLIGNEMIKTLLSHSSDRSAAEKRNT  480 (480)
T ss_pred             hhhhHHHHHHHHHHHHHhhhccchhhchhhHHHHHHHHhhhhhhhccccCC
Confidence            566666654556666777888778777777776666666667788999875

>PRK08374 homoserine dehydrogenase; Provisional

Probab=95.22  E-value=0.045  Score=52.56  Aligned_cols=86  Identities=19%  Similarity=0.308  Sum_probs=49.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHH--------cC--CeEE-EEcCCC-----CcH--HH----HHhCCC-c-ee-------c
Q 044593           31 SLKIAVIGFGNFGQFLAKAFAR--------HH--HTLL-VHSRSD-----HSP--AV----RQQLNA-P-FF-------A   79 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~--------~G--~~V~-~~dr~~-----~~~--~~----a~~~g~-~-~~-------~   79 (335)
                      .++|+|+|+|++|+.+++.|.+        .|  .+|. +.|++.     +..  ..    ..+.+. . +.       .
T Consensus         2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~   81 (336)
T PRK08374          2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF   81 (336)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence            4799999999999999998877        46  3443 346442     111  11    111111 0 11       1


Q ss_pred             ChhhHh-hcCCCEEEEecCchhHHHHHhhccccccCCccEEE
Q 044593           80 DLNDLC-ELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFV  120 (335)
Q Consensus        80 ~~~~~~-~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVv  120 (335)
                      +..+++ ..++|+||-+++.....++....    +..|.-|+
T Consensus        82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~a----l~~G~~VV  119 (336)
T PRK08374         82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEA----LKEGKSVV  119 (336)
T ss_pred             CHHHHHhcCCCCEEEECCCcHHHHHHHHHH----HhhCCcEE
Confidence            444554 14689999888776665555544    34555444

>PRK06392 homoserine dehydrogenase; Provisional

Probab=95.14  E-value=0.033  Score=53.20  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=20.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHHc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARH   53 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~   53 (335)
                      |||+|||+|++|+.+++.|.+.
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~   22 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSR   22 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC
Confidence            5899999999999999999873

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=95.13  E-value=0.047  Score=52.15  Aligned_cols=64  Identities=16%  Similarity=0.158  Sum_probs=42.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHH-hCCCce-ec----C---hhhHhhcCCCEEEEe
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQ-QLNAPF-FA----D---LNDLCELHPDVVLLS   95 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~-~~g~~~-~~----~---~~~~~~~~aDvVIla   95 (335)
                      +|||.|.|. |.+|+.++..|.+. |++|++++|+........ ..++.. ..    +   ..+++ +++|+||-+
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~~d~ViH~   75 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHV-KKCDVILPL   75 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHH-cCCCEEEEC
Confidence            478999995 99999999999886 699999998764322121 122321 11    2   12344 689999953

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=95.12  E-value=0.085  Score=50.52  Aligned_cols=90  Identities=16%  Similarity=0.207  Sum_probs=52.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc---CCeEEEEcC-C-CCcHHHHHhC----CC-------------------cee--cC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH---HHTLLVHSR-S-DHSPAVRQQL----NA-------------------PFF--AD   80 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~---G~~V~~~dr-~-~~~~~~a~~~----g~-------------------~~~--~~   80 (335)
                      |+||+|=|+|+||..+.+.+.+.   ..+|+.+.- . .+......+.    |-                   ...  .+
T Consensus         1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d   80 (337)
T PRK07403          1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN   80 (337)
T ss_pred             CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence            46999999999999999997654   356665532 1 1222222221    10                   011  23


Q ss_pred             hhhHhhc--CCCEEEEecCchhHHHHHhhccccccCCccEEEEcCC
Q 044593           81 LNDLCEL--HPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        81 ~~~~~~~--~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +.++-+.  ++|+||.|+......+....    +++.|+..+++++
T Consensus        81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~----hl~aGak~V~iSa  122 (337)
T PRK07403         81 PLNLPWKEWGIDLIIESTGVFVTKEGASK----HIQAGAKKVLITA  122 (337)
T ss_pred             cccCChhhcCCCEEEeccchhhhHHHHHH----HhhCCcEEEEeCC
Confidence            3443223  79999999987765554443    2445666666654

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.11  E-value=0.07  Score=48.58  Aligned_cols=32  Identities=25%  Similarity=0.305  Sum_probs=28.8

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      ||.|||+|.+|..+++.|...|. +++++|.+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            68999999999999999999997 788888763

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.11  E-value=0.025  Score=55.29  Aligned_cols=37  Identities=19%  Similarity=0.486  Sum_probs=33.4

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .+++||.|+| .|.+|..+++.|.+.|++|++++|+..
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~   95 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS   95 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence            4578999999 599999999999999999999999864

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=95.09  E-value=0.021  Score=53.40  Aligned_cols=58  Identities=28%  Similarity=0.403  Sum_probs=38.1

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHh-hcCCCEEEEecC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLC-ELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~-~~~aDvVIlavp   97 (335)
                      |||.|+| .|.+|+.+...|.+.|++|+.++|++-.        +.......+++ ....|+||.|.-
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~d--------l~d~~~~~~~~~~~~pd~Vin~aa   60 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRSDLD--------LTDPEAVAKLLEAFKPDVVINCAA   60 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS---------TTSHHHHHHHHHHH--SEEEE---
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcC--------CCCHHHHHHHHHHhCCCeEeccce
Confidence            7999999 6999999999999999999999877321        11111122222 136899999863

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PLN02650 dihydroflavonol-4-reductase

Probab=95.09  E-value=0.076  Score=50.76  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=32.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ..++|.|.| .|.+|+.++..|.+.|++|++.+|+...
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~   41 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPAN   41 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcch
Confidence            467899999 6999999999999999999998887654

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=95.09  E-value=0.033  Score=52.41  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=29.1

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      +|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            699999999999999999999999999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.06  E-value=0.13  Score=51.18  Aligned_cols=64  Identities=17%  Similarity=0.248  Sum_probs=45.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcH--HHHHhCCCceecC--hhhHhhcCCCEEEEec
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSP--AVRQQLNAPFFAD--LNDLCELHPDVVLLST   96 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~--~~a~~~g~~~~~~--~~~~~~~~aDvVIlav   96 (335)
                      .++|.|||+|..|.+.+..|.+.  |++|+++|.++...  +... .|+.....  ..+.+ .++|+||++.
T Consensus         7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~-~g~~~~~g~~~~~~~-~~~d~vV~Sp   76 (438)
T PRK04663          7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLP-EDVELHSGGWNLEWL-LEADLVVTNP   76 (438)
T ss_pred             CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhh-cCCEEEeCCCChHHh-ccCCEEEECC
Confidence            36899999999999999999887  58999999765322  2222 37755211  22334 6799998855

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=95.06  E-value=0.036  Score=53.06  Aligned_cols=91  Identities=19%  Similarity=0.199  Sum_probs=53.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCC----CcHHHHHhC----C-------------------Cce--ec
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSD----HSPAVRQQL----N-------------------APF--FA   79 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~----~~~~~a~~~----g-------------------~~~--~~   79 (335)
                      ++||+|.|+|.||..+.+.|.+.++  ++.++..|.    +......+.    |                   +..  ..
T Consensus         1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~   80 (336)
T PRK13535          1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHER   80 (336)
T ss_pred             CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence            3689999999999999999987532  344442221    111111111    0                   001  12


Q ss_pred             ChhhHhh--cCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           80 DLNDLCE--LHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        80 ~~~~~~~--~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ++.++.+  .++|+||.|+......+.....    +..|+.++++++.
T Consensus        81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~----l~aGAk~V~iSap  124 (336)
T PRK13535         81 DIASLPWRELGVDVVLDCTGVYGSREDGEAH----IAAGAKKVLFSHP  124 (336)
T ss_pred             CcccCcccccCCCEEEEccchhhhHHHHHHH----HHcCCEEEEecCC
Confidence            4444332  4799999999887666655433    4567777776543

>PRK05868 hypothetical protein; Validated

Probab=95.04  E-value=0.033  Score=53.98  Aligned_cols=35  Identities=20%  Similarity=0.147  Sum_probs=32.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      |++|.|||.|..|.++|..|++.|++|+++++.+.
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            46899999999999999999999999999998764

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=95.02  E-value=0.044  Score=39.80  Aligned_cols=30  Identities=27%  Similarity=0.306  Sum_probs=27.5

Q ss_pred             EEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           36 VIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        36 IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      |||.|.-|.+.|..|++.|++|+++++++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            899999999999999999999999999875

...

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=95.02  E-value=0.033  Score=51.24  Aligned_cols=63  Identities=17%  Similarity=0.195  Sum_probs=43.3

Q ss_pred             EEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee--cChhhHhhcCCCEEEEecC
Q 044593           34 IAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF--ADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        34 I~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp   97 (335)
                      |.|.| +|.+|+.+++.|.+.|++|++++|++.........++...  ....+.+ .++|+||.+..
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~Vvh~a~   66 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEAL-EGADAVINLAG   66 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhc-CCCCEEEECCC
Confidence            46888 6999999999999999999999998765422111122111  1222334 67999998774

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=95.01  E-value=0.1  Score=51.98  Aligned_cols=37  Identities=32%  Similarity=0.378  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      +...++|.|||.|..|.+.|..|.+.|++|+++|+++
T Consensus       137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~  173 (457)
T PRK11749        137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD  173 (457)
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence            3457899999999999999999999999999999864

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=95.01  E-value=0.064  Score=52.70  Aligned_cols=31  Identities=19%  Similarity=0.452  Sum_probs=25.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHH-cCCeEEE-EcC
Q 044593           32 LKIAVIGFGNFGQFLAKAFAR-HHHTLLV-HSR   62 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~-~G~~V~~-~dr   62 (335)
                      +||||.|+|.||..+++.+.. .+.+|+. .|+
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp  118 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDP  118 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCC
Confidence            599999999999999999875 5678766 453

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=94.99  E-value=0.073  Score=50.99  Aligned_cols=89  Identities=18%  Similarity=0.161  Sum_probs=55.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHHc-CCeEEEEcC---CCCcHHHHHhC----CC-------------------ce--ecChh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARH-HHTLLVHSR---SDHSPAVRQQL----NA-------------------PF--FADLN   82 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~-G~~V~~~dr---~~~~~~~a~~~----g~-------------------~~--~~~~~   82 (335)
                      +||+|-|+|.||..+.+.+.+. +.+|+.++-   +.+......+.    |-                   ..  ..++.
T Consensus         3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp~   82 (337)
T PTZ00023          3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDPA   82 (337)
T ss_pred             eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCChh
Confidence            6999999999999999997654 467766531   22233322221    11                   01  12344


Q ss_pred             hHhh--cCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCC
Q 044593           83 DLCE--LHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        83 ~~~~--~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ++-+  .++|+||.|+......+....    +++.|+.++|+++
T Consensus        83 ~lpW~~~gvDiVle~tG~~~s~~~a~~----~l~aGak~V~iSa  122 (337)
T PTZ00023         83 AIPWGKNGVDVVCESTGVFLTKEKAQA----HLKGGAKKVIMSA  122 (337)
T ss_pred             hCCccccCCCEEEEecchhcCHHHHHH----HhhCCCEEEEeCC
Confidence            4422  378999999987766555543    3557777777765

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=94.97  E-value=0.098  Score=49.30  Aligned_cols=37  Identities=16%  Similarity=0.204  Sum_probs=32.4

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      .+++|.|.| .|.||+.++..|.+.|++|++.+|++..
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~   41 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKD   41 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcc
Confidence            467899999 6999999999999999999888887653

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=94.96  E-value=0.11  Score=52.39  Aligned_cols=35  Identities=40%  Similarity=0.512  Sum_probs=32.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      ..++|.|||.|..|.+.|..|++.|++|+++++.+
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~  176 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED  176 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            45799999999999999999999999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=94.92  E-value=0.14  Score=45.75  Aligned_cols=78  Identities=17%  Similarity=0.110  Sum_probs=56.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-c-HHHHHhCCCcee---cChhhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-S-PAVRQQLNAPFF---ADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~-~~~a~~~g~~~~---~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ..+++|.|||.|.+|..=++.|.+.|.+|+++..... . ...+.+.++...   -+..++  .++++||.||+.....+
T Consensus        10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~--~~~~lviaAt~d~~ln~   87 (210)
T COG1648          10 LEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL--DDAFLVIAATDDEELNE   87 (210)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhh--cCceEEEEeCCCHHHHH
Confidence            3578999999999999999999999999999987762 2 233444443321   233344  46999999999987765


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      -+.+.
T Consensus        88 ~i~~~   92 (210)
T COG1648          88 RIAKA   92 (210)
T ss_pred             HHHHH
Confidence            55544

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=94.91  E-value=0.079  Score=52.39  Aligned_cols=68  Identities=15%  Similarity=0.187  Sum_probs=46.0

Q ss_pred             CeEEEEcccHHHH-HHHHHHHHc-----CCeEEEEcCC-CCcHHH--------HHhCC----CceecChhhHhhcCCCEE
Q 044593           32 LKIAVIGFGNFGQ-FLAKAFARH-----HHTLLVHSRS-DHSPAV--------RQQLN----APFFADLNDLCELHPDVV   92 (335)
Q Consensus        32 ~kI~IIG~G~mG~-siA~~L~~~-----G~~V~~~dr~-~~~~~~--------a~~~g----~~~~~~~~~~~~~~aDvV   92 (335)
                      |||+|||.|..-+ .+...|...     +-+|+.+|++ ++..+.        ..+.|    +..++|..+++ .++|+|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al-~gadfV   79 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREAL-EGADFV   79 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHh-CCCCEE
Confidence            6999999988633 344555442     2489999999 555432        12233    23567888888 899999


Q ss_pred             EEecCchh
Q 044593           93 LLSTSILS  100 (335)
Q Consensus        93 Ilavp~~~  100 (335)
                      |.+.-...
T Consensus        80 i~~~~vg~   87 (419)
T cd05296          80 FTQIRVGG   87 (419)
T ss_pred             EEEEeeCC
Confidence            99886544

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK07411 hypothetical protein; Validated

Probab=94.90  E-value=0.06  Score=52.74  Aligned_cols=36  Identities=17%  Similarity=0.117  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      .+..||+|||+|.+|+.++..|...|. +++++|.+.
T Consensus        36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            346799999999999999999999997 788888763

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.89  E-value=0.07  Score=52.31  Aligned_cols=35  Identities=23%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      +..||.|||+|.+|+.++..|...|. +++++|.+.
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            46799999999999999999999997 788998763

>PRK10537 voltage-gated potassium channel; Provisional

Probab=94.86  E-value=0.14  Score=50.14  Aligned_cols=69  Identities=10%  Similarity=-0.013  Sum_probs=48.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecChhhHh---hcCCCEEEEecCchhH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADLNDLC---ELHPDVVLLSTSILST  101 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~~~~~---~~~aDvVIlavp~~~~  101 (335)
                      ...|.|+|+|.+|..+++.|.+.|.+++++|.+..  +...+.|...    .++.+.+.   .++|+.||++++.+..
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~  315 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL--EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDAD  315 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchh--hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHH
Confidence            46799999999999999999999999999987632  2233334431    12222221   1689999999887764

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.82  E-value=0.082  Score=49.88  Aligned_cols=39  Identities=15%  Similarity=0.249  Sum_probs=31.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      .+++|+|+|+|-+|..=.+..++.|++|+++|++....+
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kke  219 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKE  219 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHH
Confidence            478999999988887666666778999999999985544

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=94.81  E-value=0.19  Score=47.98  Aligned_cols=47  Identities=13%  Similarity=0.194  Sum_probs=41.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP   76 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~   76 (335)
                      ...+|.|+|.|.+|...+..++..|.+|++.+++++..+.++++|+.
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~  212 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGAD  212 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc
Confidence            46799999999999999999999999999999998888778777763

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.81  E-value=0.11  Score=49.53  Aligned_cols=72  Identities=11%  Similarity=0.184  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecChhhH----------hhcCCCEEEEecC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADLNDL----------CELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~~~~----------~~~~aDvVIlavp   97 (335)
                      ..+..++|+|+|.+|-+....++..|. .|+++|.++++.++|+++|...+-+..+.          ....+|..|-|+-
T Consensus       184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G  263 (366)
T COG1062         184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVG  263 (366)
T ss_pred             CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccC
Confidence            346789999999999999999999997 78999999999999999998754332211          1025677777765


Q ss_pred             chh
Q 044593           98 ILS  100 (335)
Q Consensus        98 ~~~  100 (335)
                      ...
T Consensus       264 ~~~  266 (366)
T COG1062         264 NVE  266 (366)
T ss_pred             CHH
Confidence            443

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=94.81  E-value=0.054  Score=50.10  Aligned_cols=63  Identities=24%  Similarity=0.210  Sum_probs=44.3

Q ss_pred             eEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc----eecChh---hHhh-----cC-CCEEEEecCc
Q 044593           33 KIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP----FFADLN---DLCE-----LH-PDVVLLSTSI   98 (335)
Q Consensus        33 kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~----~~~~~~---~~~~-----~~-aDvVIlavp~   98 (335)
                      +|.|+| .|.+|+.++..|.+.|++|.+..|+++...   ..++.    ...|.+   +++.     .. +|.|+++.|.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~---~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~   77 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA---GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP   77 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc---CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence            588999 599999999999999999999999986432   12221    122322   2220     24 8999988774

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=94.80  E-value=0.089  Score=50.27  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHc-CCeEEEEc-CCC-CcHHHHHhC----CC-------------------ce--ecChhh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARH-HHTLLVHS-RSD-HSPAVRQQL----NA-------------------PF--FADLND   83 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~-G~~V~~~d-r~~-~~~~~a~~~----g~-------------------~~--~~~~~~   83 (335)
                      +||+|-|+|.||..+.+.+.+. +.+|+.++ ..+ +......+.    |-                   ..  ..++.+
T Consensus         3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~   82 (331)
T PRK15425          3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   82 (331)
T ss_pred             eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChhh
Confidence            5999999999999999997654 56777663 221 222323232    10                   01  114444


Q ss_pred             Hhhc--CCCEEEEecCchhHHHHHhhccccccCCccEEEEcCC
Q 044593           84 LCEL--HPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        84 ~~~~--~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +.+.  ++|+||.|+......+....    +++.|+.++|+++
T Consensus        83 ~~w~~~gvDiVle~tG~f~s~~~a~~----hl~aGak~V~iSa  121 (331)
T PRK15425         83 LKWDEVGVDVVAEATGLFLTDETARK----HITAGAKKVVMTG  121 (331)
T ss_pred             CcccccCCCEEEEecchhhcHHHHHH----HHHCCCEEEEeCC
Confidence            3323  78888888876655554432    3456777777764

>PRK09414 glutamate dehydrogenase; Provisional

Probab=94.80  E-value=0.072  Score=52.93  Aligned_cols=94  Identities=7%  Similarity=0.015  Sum_probs=57.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEE-c----------CCCCcHHHHH-hC-C-Cce--------ecChhhHhh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVH-S----------RSDHSPAVRQ-QL-N-APF--------FADLNDLCE   86 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~-d----------r~~~~~~~a~-~~-g-~~~--------~~~~~~~~~   86 (335)
                      .++++|+|.|+|++|+..|+.|.+.|.+|+++ |          .|.+.+.... +. | +..        ..+.+++..
T Consensus       230 l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~  309 (445)
T PRK09414        230 FEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWS  309 (445)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccc
Confidence            46789999999999999999999999998876 7          3322221111 11 1 110        112333332


Q ss_pred             cCCCEEEEecCchhH-HHHHhhccccccCCccEEEEcCCC
Q 044593           87 LHPDVVLLSTSILST-QSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        87 ~~aDvVIlavp~~~~-~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .+||++|-|.....+ .+-...+. +  ..-.+|+..++.
T Consensus       310 ~d~DVliPaAl~n~It~~~a~~i~-~--~~akiIvEgAN~  346 (445)
T PRK09414        310 VPCDIALPCATQNELDEEDAKTLI-A--NGVKAVAEGANM  346 (445)
T ss_pred             cCCcEEEecCCcCcCCHHHHHHHH-H--cCCeEEEcCCCC
Confidence            479999999887764 34444441 0  012466666544

>PLN02477 glutamate dehydrogenase

Probab=94.78  E-value=0.14  Score=50.33  Aligned_cols=91  Identities=13%  Similarity=0.107  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEE-EEcCC----------CCcH-HHHHhCC-Cce-----ecChhhHhhcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLL-VHSRS----------DHSP-AVRQQLN-APF-----FADLNDLCELHPD   90 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~-~~dr~----------~~~~-~~a~~~g-~~~-----~~~~~~~~~~~aD   90 (335)
                      .++++|+|.|+|++|+.+|+.|.+.|.+|+ +.|.+          .+.+ +...+.| +..     .-+.+++...+||
T Consensus       204 l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~D  283 (410)
T PLN02477        204 IAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCD  283 (410)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceecccc
Confidence            467899999999999999999999999987 55765          2211 1111111 110     1123333325899


Q ss_pred             EEEEecCchh-HHHHHhhccccccCCccEEEEcCCC
Q 044593           91 VVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        91 vVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ++|-|.-... ..+....+.      -.+|+..++.
T Consensus       284 vliP~Al~~~I~~~na~~i~------ak~I~egAN~  313 (410)
T PLN02477        284 VLIPAALGGVINKENAADVK------AKFIVEAANH  313 (410)
T ss_pred             EEeeccccccCCHhHHHHcC------CcEEEeCCCC
Confidence            9998854444 244444442      2366666544

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.76  E-value=0.1  Score=52.21  Aligned_cols=65  Identities=20%  Similarity=0.239  Sum_probs=43.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-CCcee-cChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-NAPFF-ADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-g~~~~-~~~~~~~~~~aDvVIlav   96 (335)
                      .++||+|+|+|.-|.+.++.|.+ |.+|+++|.++.......+. ..... ....+.. .++|+||++-
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vV~SP   71 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRW-QNLDKIVLSP   71 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHh-hCCCEEEECC
Confidence            46799999999999999999995 99999999654432212221 11111 1122334 6799998854

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.75  E-value=0.066  Score=51.17  Aligned_cols=37  Identities=19%  Similarity=0.129  Sum_probs=33.2

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ++++|.|.| .|.+|+.++..|.+.|++|++++|++..
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~   40 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPT   40 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCcc
Confidence            468999999 6999999999999999999999988753

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=94.75  E-value=0.15  Score=48.00  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=32.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      .+++|.|.| .|.+|+.++..|.+.|++|++..|+...
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTD   41 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence            467999999 6999999999999999999988777643

>PRK07538 hypothetical protein; Provisional

Probab=94.73  E-value=0.04  Score=54.03  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=31.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      |+|.|||.|..|.++|..|++.|++|+++++.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            6899999999999999999999999999998764

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=94.73  E-value=0.14  Score=49.12  Aligned_cols=35  Identities=20%  Similarity=0.459  Sum_probs=27.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc-CCeEEE-EcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH-HHTLLV-HSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~-G~~V~~-~dr~~~   65 (335)
                      .+||+|+|+|.||...++.+.+. +.++++ .|++.+
T Consensus         5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~   41 (338)
T PLN02358          5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFIT   41 (338)
T ss_pred             ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCC
Confidence            47999999999999999998764 467654 566543

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=94.73  E-value=0.046  Score=53.09  Aligned_cols=34  Identities=29%  Similarity=0.404  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      ..+|.|||.|..|.++|..|.+.|++|+++|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            3589999999999999999999999999999764

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.72  E-value=0.032  Score=52.82  Aligned_cols=89  Identities=10%  Similarity=0.063  Sum_probs=56.2

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCe---EEEEcCC-CCcHHHHHhCCCce-ecChh-hHhhcCCCEEEEecCchhHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHT---LLVHSRS-DHSPAVRQQLNAPF-FADLN-DLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~---V~~~dr~-~~~~~~a~~~g~~~-~~~~~-~~~~~~aDvVIlavp~~~~~  102 (335)
                      ..++|+| | .|.+|..+-..|.+.++.   +..++.. ...-+...-.|-.. ..+++ +.. ++.|++|+ .+.+...
T Consensus         2 ~~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f-~~vDia~f-ag~~~s~   78 (322)
T PRK06901          2 ATLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEW-ADFNYVFF-AGKMAQA   78 (322)
T ss_pred             CcceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCc-ccCCEEEE-cCHHHHH
Confidence            4678999 9 599999999999999874   4454433 11111010011111 11121 123 68999999 8877666


Q ss_pred             HHHhhccccccCCccEEEEcCCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ++....    .+.|++|+|.+|.
T Consensus        79 ~~ap~a----~~aG~~VIDnSsa   97 (322)
T PRK06901         79 EHLAQA----AEAGCIVIDLYGI   97 (322)
T ss_pred             HHHHHH----HHCCCEEEECChH
Confidence            666644    4579999999874

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=94.71  E-value=0.058  Score=49.89  Aligned_cols=62  Identities=19%  Similarity=0.276  Sum_probs=42.7

Q ss_pred             EEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhc-CCCEEEEec
Q 044593           34 IAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL-HPDVVLLST   96 (335)
Q Consensus        34 I~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~-~aDvVIlav   96 (335)
                      |.|-| .|.||..+...|.+.||+|++..|++.....-....+...+.+++.. . ++|+||--.
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~-~~~~DavINLA   64 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADAL-TLGIDAVINLA   64 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcc-cCCCCEEEECC
Confidence            45666 89999999999999999999999998655422222222223334443 3 599999643

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=94.70  E-value=0.31  Score=46.33  Aligned_cols=93  Identities=11%  Similarity=0.074  Sum_probs=66.4

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcC--CCEEEEecCchhHHHHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELH--PDVVLLSTSILSTQSVL  105 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--aDvVIlavp~~~~~~vl  105 (335)
                      +..||.|-| .|.-|+..+....+.|-+| -++.+...-.+ ....|+..+.+..++. +.  +|+.++++|...+.+.+
T Consensus        28 ~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkgg~~-v~~~Gvpvy~sv~ea~-~~~~~D~avI~VPa~~v~dai  105 (317)
T PTZ00187         28 KNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTT-HLKHGLPVFATVKEAK-KATGADASVIYVPPPHAASAI  105 (317)
T ss_pred             CCCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCCCce-EecCCccccCCHHHHh-cccCCCEEEEecCHHHHHHHH
Confidence            467999999 6999999999999999875 45666541111 1124788888998887 55  89999999999988888


Q ss_pred             hhccccccCCccEEEEcCCCC
Q 044593          106 KSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK  126 (335)
                      .+...  ..-..+|+-+.+..
T Consensus       106 ~Ea~~--aGI~~~ViiteGfp  124 (317)
T PTZ00187        106 IEAIE--AEIPLVVCITEGIP  124 (317)
T ss_pred             HHHHH--cCCCEEEEECCCCc
Confidence            77632  22233455444443

>PRK06847 hypothetical protein; Provisional

Probab=94.70  E-value=0.049  Score=52.38  Aligned_cols=36  Identities=19%  Similarity=0.098  Sum_probs=32.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ++++|.|||.|..|.++|..|++.|++|+++++++.
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            357899999999999999999999999999998764

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=94.69  E-value=0.4  Score=45.25  Aligned_cols=93  Identities=8%  Similarity=0.061  Sum_probs=66.3

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcC--CCEEEEecCchhHHH
Q 044593           28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELH--PDVVLLSTSILSTQS  103 (335)
Q Consensus        28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--aDvVIlavp~~~~~~  103 (335)
                      -.+..||.|.| .|..|+..-..+.+.|-+| -+++......+   -.|+..+.+..++. ..  .|+.|+++|...+.+
T Consensus         9 ~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~~~~---i~G~~~y~sv~dlp-~~~~~DlAvI~vPa~~v~~   84 (300)
T PLN00125          9 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAK-AETKANASVIYVPPPFAAA   84 (300)
T ss_pred             ecCCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCCCce---EcCeeccCCHHHHh-hccCCCEEEEecCHHHHHH
Confidence            34568999999 7999999999999999775 45666531111   13777888888876 44  799999999999999


Q ss_pred             HHhhccccccCCccEEEEcCCCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~SvK  126 (335)
                      ++++...  ..-..+|+-.++..
T Consensus        85 al~e~~~--~Gvk~~vIisaGf~  105 (300)
T PLN00125         85 AILEAME--AELDLVVCITEGIP  105 (300)
T ss_pred             HHHHHHH--cCCCEEEEECCCCC
Confidence            9988742  22233444444443

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=94.69  E-value=0.71  Score=44.22  Aligned_cols=43  Identities=14%  Similarity=0.322  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHH-cCCeEE-EEcCCCCcHHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFAR-HHHTLL-VHSRSDHSPAVR   70 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~-~G~~V~-~~dr~~~~~~~a   70 (335)
                      ..+.-|||+||+|.||+-++..... .|++|. +.|++....+.+
T Consensus        14 ~G~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A   58 (438)
T COG4091          14 EGKPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRA   58 (438)
T ss_pred             cCCceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHH
Confidence            4567899999999999999988776 588875 458887655444

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=94.69  E-value=0.3  Score=44.97  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEE-EEc
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLL-VHS   61 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~-~~d   61 (335)
                      ..++.||+|.|+|++|+..|+.|.+.|.+|+ +.|
T Consensus        35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD   69 (254)
T cd05313          35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD   69 (254)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            3467899999999999999999999999887 545

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.67  E-value=0.25  Score=46.86  Aligned_cols=89  Identities=20%  Similarity=0.200  Sum_probs=60.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec---Ch---hhHhhcCCCEEEEecCchh-H
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA---DL---NDLCELHPDVVLLSTSILS-T  101 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~---~~---~~~~~~~aDvVIlavp~~~-~  101 (335)
                      ....+|.|.|.|.+|..++..++..|.+|++++++++..+.+.+.|+...-   +.   .... ..+|+++-|++... .
T Consensus       168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~-~~~d~v~~~~g~~~~~  246 (337)
T cd05283         168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAA-GSLDLIIDTVSASHDL  246 (337)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhcc-CCceEEEECCCCcchH
Confidence            346789999999999999999999999999999988777777777764211   11   1112 45788888877653 3


Q ss_pred             HHHHhhccccccCCccEEEEcC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      ...+..+     +++..+++++
T Consensus       247 ~~~~~~l-----~~~G~~v~~g  263 (337)
T cd05283         247 DPYLSLL-----KPGGTLVLVG  263 (337)
T ss_pred             HHHHHHh-----cCCCEEEEEe
Confidence            4444333     3445566654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK05866 short chain dehydrogenase; Provisional

Probab=94.66  E-value=0.091  Score=49.11  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=33.8

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP   67 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~   67 (335)
                      ++.++|.|.| .|.+|..+|..|.+.|++|++.+|+++..
T Consensus        38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l   77 (293)
T PRK05866         38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLL   77 (293)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            3457899999 59999999999999999999999987543

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.63  E-value=0.046  Score=52.93  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc---CCeEEEEcCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH---HHTLLVHSRS   63 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~---G~~V~~~dr~   63 (335)
                      |+..+|.|||.|..|.++|..|++.   |++|+++|+.
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            4567899999999999999999998   9999999994

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.62  E-value=0.17  Score=48.75  Aligned_cols=47  Identities=17%  Similarity=0.247  Sum_probs=40.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAP   76 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~   76 (335)
                      ...+|.|+|.|.+|...+..++..|. +|++.+++++..+.++++|+.
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  238 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT  238 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence            35789999999999999999899998 699999998888888888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK07588 hypothetical protein; Provisional

Probab=94.59  E-value=0.047  Score=53.02  Aligned_cols=34  Identities=29%  Similarity=0.331  Sum_probs=31.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ++|.|||.|..|.++|..|++.|++|+++++.++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            5899999999999999999999999999997754

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=94.59  E-value=0.07  Score=49.16  Aligned_cols=56  Identities=20%  Similarity=0.313  Sum_probs=39.6

Q ss_pred             eEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhc--CCCEEEEecC
Q 044593           33 KIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTS   97 (335)
Q Consensus        33 kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp   97 (335)
                      ||.|+| .|.+|+.++..|.+.|++|++++|+.-        .+....+..+++ .  +.|+||.+..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~--------d~~~~~~~~~~~-~~~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL--------DLTDPEALERLL-RAIRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc--------CCCCHHHHHHHH-HhCCCCEEEECCc
Confidence            689999 599999999999999999999998621        111111223333 3  3599998764

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK08013 oxidoreductase; Provisional

Probab=94.58  E-value=0.052  Score=53.07  Aligned_cols=35  Identities=17%  Similarity=0.166  Sum_probs=32.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ...|.|||.|..|.++|..|++.|++|.++|+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            35799999999999999999999999999998764

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.52  E-value=0.068  Score=49.65  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=32.0

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP   67 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~   67 (335)
                      |+|.|.| .|-+|+.++..|.+.|++|.++||.....
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~   37 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGL   37 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccc
Confidence            4599999 69999999999999999999999987544

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=94.47  E-value=0.087  Score=52.39  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=31.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      +.|||.|.| .|.+|+.++..|.+.|++|+++|+..
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~  154 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFF  154 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            458999999 69999999999999999999999864

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=94.46  E-value=0.057  Score=52.46  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=32.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      ....|.|||.|..|.++|..|.+.|++|.++|+.+
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            44689999999999999999999999999999864

>PRK13984 putative oxidoreductase; Provisional

Probab=94.44  E-value=0.18  Score=52.16  Aligned_cols=70  Identities=24%  Similarity=0.243  Sum_probs=50.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc---------------------HHHHHhCCCcee------c-
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS---------------------PAVRQQLNAPFF------A-   79 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~---------------------~~~a~~~g~~~~------~-   79 (335)
                      ..+.++|.|||.|..|.+.|..|.+.|++|+++++++..                     .+...+.|+...      . 
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~  359 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD  359 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc
Confidence            346789999999999999999999999999999876521                     123445565421      1 


Q ss_pred             -ChhhHhhcCCCEEEEecCc
Q 044593           80 -DLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        80 -~~~~~~~~~aDvVIlavp~   98 (335)
                       +.+++. ..+|.||+|+..
T Consensus       360 ~~~~~~~-~~yD~vilAtGa  378 (604)
T PRK13984        360 IPLEELR-EKHDAVFLSTGF  378 (604)
T ss_pred             CCHHHHH-hcCCEEEEEcCc
Confidence             223333 578999999864

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.42  E-value=0.17  Score=47.36  Aligned_cols=36  Identities=17%  Similarity=0.289  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      +...+|.|+|+|.+|.-+|+.|...|. +|+++|.+.
T Consensus        17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            456789999999999999999999997 799998764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.42  E-value=0.059  Score=52.62  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=32.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ...+|.|||.|..|.++|..|.+.|++|.++++.+.
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            356899999999999999999999999999998753

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=94.39  E-value=0.059  Score=50.69  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=29.8

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRS   63 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~   63 (335)
                      .|.|||.|.+|.++|..|++.|++|++++++
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            4899999999999999999999999999998

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=94.39  E-value=0.066  Score=51.58  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=33.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      +..++|.|||.|.+|.+.|..|++.|++|+++|+.+-
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~   38 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA   38 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            3567999999999999999999999999999998763

>PLN02206 UDP-glucuronate decarboxylase

Probab=94.39  E-value=0.1  Score=51.93  Aligned_cols=35  Identities=20%  Similarity=0.317  Sum_probs=31.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      +.|||.|.| .|.+|+.++..|.++|++|+++|+..
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~  153 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFF  153 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            568999999 69999999999999999999998753

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.39  E-value=0.14  Score=51.39  Aligned_cols=66  Identities=15%  Similarity=0.094  Sum_probs=45.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-cHH---HHHhCCCcee-cChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-SPA---VRQQLNAPFF-ADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~~~---~a~~~g~~~~-~~~~~~~~~~aDvVIlav   96 (335)
                      .++||+|+|+|.-|.+.++.|.+.|.+|+++|.++. ...   ...+.+.... ....+.+ .++|+||.+-
T Consensus         7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~d~vV~Sp   77 (468)
T PRK04690          7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRL-AAFDVVVKSP   77 (468)
T ss_pred             CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHc-cCCCEEEECC
Confidence            367899999999999999999999999999996542 221   1222222211 1223334 6799999854

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=94.37  E-value=0.059  Score=51.78  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=30.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      -.|.|||.|.+|.++|..|++.|++|+++|+..
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            469999999999999999999999999999875

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=94.36  E-value=0.23  Score=39.27  Aligned_cols=87  Identities=20%  Similarity=0.201  Sum_probs=51.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHH----hCCCc---ee-cCh----hhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQ----QLNAP---FF-ADL----NDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~----~~g~~---~~-~~~----~~~~~~~aDvVIlav   96 (335)
                      ..++|.-+|+|. |......+... +.+|+++|.++...+.++    ..+..   .. .+.    .... ...|+|++..
T Consensus        19 ~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~v~~~~   96 (124)
T TIGR02469        19 PGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL-PEPDRVFIGG   96 (124)
T ss_pred             CCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc-CCCCEEEECC
Confidence            456899999988 44433333333 358999999987665443    23321   11 121    1222 4689999876


Q ss_pred             CchhHHHHHhhccccccCCccEE
Q 044593           97 SILSTQSVLKSIPFQRLKRSTLF  119 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l~~~~iV  119 (335)
                      +.....++++.+. ..+++|..+
T Consensus        97 ~~~~~~~~l~~~~-~~Lk~gG~l  118 (124)
T TIGR02469        97 SGGLLQEILEAIW-RRLRPGGRI  118 (124)
T ss_pred             cchhHHHHHHHHH-HHcCCCCEE
Confidence            6555666777664 456665543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK06057 short chain dehydrogenase; Provisional

Probab=94.32  E-value=0.089  Score=47.67  Aligned_cols=40  Identities=15%  Similarity=0.140  Sum_probs=34.9

Q ss_pred             CCCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593           28 KSTSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSP   67 (335)
Q Consensus        28 ~~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~   67 (335)
                      .+++++|.|+|. |.||..+++.|.+.|++|++++|++...
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~   44 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAG   44 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            356789999995 9999999999999999999999987543

>PRK10637 cysG siroheme synthase; Provisional

Probab=94.30  E-value=0.18  Score=50.45  Aligned_cols=76  Identities=11%  Similarity=-0.052  Sum_probs=53.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC--cHHHHHhCCCceec---ChhhHhhcCCCEEEEecCchhHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH--SPAVRQQLNAPFFA---DLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~--~~~~a~~~g~~~~~---~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      +.++++|.|||.|.+|..=+..|.+.|.+|+++.+.-.  ..+.+.+..+....   ...+ + .++++||.||....+.
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~d-l-~~~~lv~~at~d~~~n   86 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESL-L-DTCWLAIAATDDDAVN   86 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHH-h-CCCEEEEECCCCHHHh
Confidence            35688999999999999999999999999999976532  22323322332211   2233 3 7899999999887655


Q ss_pred             HHH
Q 044593          103 SVL  105 (335)
Q Consensus       103 ~vl  105 (335)
                      .-+
T Consensus        87 ~~i   89 (457)
T PRK10637         87 QRV   89 (457)
T ss_pred             HHH
Confidence            443

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.25  E-value=0.098  Score=47.55  Aligned_cols=65  Identities=22%  Similarity=0.224  Sum_probs=50.3

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----e---cChhhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----F---ADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~---~~~~~~~~~~aDvVIlavp~   98 (335)
                      |+|.|.| .|.+|+.++..|.+.|++|.+..|+++...... .++..    .   .++.... .+.|.++++.+.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~-~G~~~~~~i~~~   73 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGA-KGVDGVLLISGL   73 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHh-ccccEEEEEecc
Confidence            6899998 799999999999999999999999987765444 55532    1   2233344 789999998883

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=94.25  E-value=0.061  Score=52.39  Aligned_cols=33  Identities=33%  Similarity=0.438  Sum_probs=31.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRS   63 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~   63 (335)
                      .+.|.|||.|..|.++|..|++.|++|.++++.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            468999999999999999999999999999997

>PLN02686 cinnamoyl-CoA reductase

Probab=94.20  E-value=0.1  Score=50.46  Aligned_cols=39  Identities=13%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      .+++++|.|.| .|.+|+.++..|.+.|++|.++.++...
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~   89 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQED   89 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            45678999999 5999999999999999999887776543

>PRK07045 putative monooxygenase; Reviewed

Probab=94.19  E-value=0.071  Score=51.73  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=32.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ...+|.|||.|..|.+.|..|+++|++|+++++.+.
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR   39 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence            456899999999999999999999999999998764

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.17  E-value=0.088  Score=47.16  Aligned_cols=38  Identities=16%  Similarity=0.139  Sum_probs=33.7

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ++.++|.|.| .|.+|.++++.|.+.|++|++.+|+++.
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~   42 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDD   42 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            4567899999 7999999999999999999999998653

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=94.17  E-value=0.14  Score=52.71  Aligned_cols=69  Identities=20%  Similarity=0.285  Sum_probs=47.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH--HHHhCCCceecCh---hhHhhcCCCEEEEecC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA--VRQQLNAPFFADL---NDLCELHPDVVLLSTS   97 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~--~a~~~g~~~~~~~---~~~~~~~aDvVIlavp   97 (335)
                      .+..+||+|||.|..|..++.+.++.|++|+++|.+++...  .+...-+....|.   .+++ +++|+|.....
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a-~~~dvIt~e~e   92 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFA-KRCDVLTVEIE   92 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHH-HHCCEEEEecC
Confidence            35678999999999999999999999999999999875322  1111111112343   3344 67898876543

>PRK08219 short chain dehydrogenase; Provisional

Probab=94.17  E-value=0.1  Score=45.96  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP   67 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~   67 (335)
                      +++|.|.| .|.+|..++..|.+. ++|++.+|++...
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~   39 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERL   39 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHH
Confidence            56899998 699999999999999 9999999986543

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=94.15  E-value=0.065  Score=52.56  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=31.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~   65 (335)
                      |||+|||.|.-|.++|..|+++|+ +|+++++.+.
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            689999999999999999999985 9999998764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06185 hypothetical protein; Provisional

Probab=94.15  E-value=0.069  Score=52.06  Aligned_cols=35  Identities=20%  Similarity=0.275  Sum_probs=32.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      ....|.|||.|..|.++|..|++.|++|+++|+++
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            44679999999999999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	335
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	2e-29
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	4e-14
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	8e-14
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	2e-11
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	9e-11
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	1e-10
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	1e-09
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	6e-08
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	1e-07
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	4e-07
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	8e-07
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	2e-06
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	8e-06
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	1e-05
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	2e-05
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	3e-05
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	4e-05
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	7e-05
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	1e-04
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	2e-04
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	3e-04
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	4e-04
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	5e-04

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Length = 298

 Score =  113 bits (284), Expect = 2e-29
 Identities = 61/320 (19%), Positives = 116/320 (36%), Gaps = 45/320 (14%)

Query: 18  YESQLHTQYVKSTSL--KIAVI-GFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN 74
           Y ++    +    S   KI ++ G+G  G   A+      + + +  R D + A     N
Sbjct: 6   YANENQFGFKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILAN 65

Query: 75  APFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFL 134
           A              DVV++S  I  T   ++ +    L  + L  D+ SVK  P    L
Sbjct: 66  A--------------DVVIVSVPINLTLETIERLK-PYLTENMLLADLTSVKREPLAKML 110

Query: 135 KYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCR 194
           +        L  HPMFG +   +S         +V +  D    +R +  L+     G +
Sbjct: 111 EVHTGAV--LGLHPMFGAD--IASMAK------QVVVRCDGRFPERYEWLLEQIQIWGAK 160

Query: 195 MVEMSCFDHDKYAAGSQFVTH----TMGRVLERFGVESSPIN---TKGYETLLDLVDNTK 247
           + + +  +HD      Q + H      G  L +  +  + +    +  Y   L ++    
Sbjct: 161 IYQTNATEHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMIGRLF 220

Query: 248 GDSFDLYYGLFMYNKNSLEQLQRLEMAFESIK--------QQLFGQMFRVYRKELFGSAE 299
               +LY  + M    +L  ++ L+  ++           Q       +V  ++ FG   
Sbjct: 221 AQDAELYADIIMDKSENLAVIETLKQTYDEALTFFENNDRQGFIDAFHKV--RDWFGDYS 278

Query: 300 EEEEEERVRLLSATKETQNG 319
           E+  +E  +LL    + + G
Sbjct: 279 EQFLKESRQLLQQANDLKQG 298

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 Length = 281

 Score = 70.7 bits (174), Expect = 4e-14
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 25/190 (13%)

Query: 33  KIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPAVRQQLNAP--FFADLNDLCELH 88
            + ++G G  G   AK+  R      +  +  +  S +    L         +  + +  
Sbjct: 3   NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFS 62

Query: 89  PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
           PD V+LS+ + + + + K +    L       D  SVK          L + F  +  HP
Sbjct: 63  PDFVMLSSPVRTFREIAKKLS-YILSEDATVTDQGSVKGKLVYDLENILGKRF--VGGHP 119

Query: 149 M-----FGPESAKSSWENLPFMYDKVRI-----GNDEERIKRVDKFLDVFAKEGCRMVEM 198
           +      G E +     NL +   K  I       D++R+K V +    +   G  +  M
Sbjct: 120 IAGTEKSGVEYSLD---NL-Y-EGKKVILTPTKKTDKKRLKLVKRV---WEDVGGVVEYM 171

Query: 199 SCFDHDKYAA 208
           S   HD    
Sbjct: 172 SPELHDYVFG 181

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Length = 314

 Score = 70.0 bits (172), Expect = 8e-14
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 25/190 (13%)

Query: 33  KIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPAVRQQLNAP--FFADLNDLCELH 88
            + ++G G  G   AK+  R      +  +  +  S +    L         +  + +  
Sbjct: 35  NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFS 94

Query: 89  PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
           PD V+LS+ + + + + K +    L       D  SVK          L + F  +  HP
Sbjct: 95  PDFVMLSSPVRTFREIAKKLS-YILSEDATVTDQGSVKGKLVYDLENILGKRF--VGGHP 151

Query: 149 M-----FGPESAKSSWENLPFMYDKVRI-----GNDEERIKRVDKFLDVFAKEGCRMVEM 198
           +      G E +     NL +   K  I       D++R+K V +    +   G  +  M
Sbjct: 152 IAGTEKSGVEYSLD---NL-Y-EGKKVILTPTKKTDKKRLKLVKRV---WEDVGGVVEYM 203

Query: 199 SCFDHDKYAA 208
           S   HD    
Sbjct: 204 SPELHDYVFG 213

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266

 Score = 62.9 bits (152), Expect = 2e-11
 Identities = 33/216 (15%), Positives = 75/216 (34%), Gaps = 18/216 (8%)

Query: 31  SLKIAVIGFGNFGQFLAKAFARHHHTLL-VHSRS-DHSPAVRQQLNAPFFADLNDLCELH 88
              I +IG GN    LAKA  R    ++ V+SR+ + +  + Q++ A +  DL ++   +
Sbjct: 10  DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNP-Y 68

Query: 89  PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP 148
             + ++S    +   +L+ I   + + + +     S+        + +          +P
Sbjct: 69  AKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPH------YGVFYP 122

Query: 149 MFG-PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRM-VEMSCFDHDKY 206
           M    +  +  ++ +PF        +  E    +       +        E     H   
Sbjct: 123 MQTFSKQREVDFKEIPFFI----EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAA 178

Query: 207 AAGSQFVTHTMG---RVLERFGVESSPINTKGYETL 239
                F  H       +L+++ +    +     ET 
Sbjct: 179 VFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETA 214

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A Length = 290

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 42/191 (21%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 33  KIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPAVRQQLNAP--FFADLNDLCELH 88
            I + G G  G  LA    R H  + ++ ++RSD S  +  +        AD        
Sbjct: 8   TIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAA-L 66

Query: 89  PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC-TH 147
            DV++L+  I  T   +K +    LK   +  D  S K         YL         +H
Sbjct: 67  ADVIILAVPIKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSH 126

Query: 148 PM-----FGPESAKSSWENLPFMYDKVRI-----GNDEERIKRVDKFLDVFAKEGCRMVE 197
           PM      G  +A     NL F  +   I           I  +       +    R VE
Sbjct: 127 PMAGSHKSGAVAANV---NL-F-ENAYYIFSPSCLTKPNTIPALQDL---LSGLHARYVE 178

Query: 198 MSCFDHDKYAA 208
           +   +HD   +
Sbjct: 179 IDAAEHDCVTS 189

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Length = 279

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 34/193 (17%)

Query: 32  LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS--PAVRQQLNAPFFADLNDLCELHP 89
           +KI V+G G  G  LA    R  H L+  SR   +   AV +QL      DL+ L     
Sbjct: 1   MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQT--A 58

Query: 90  DVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK----EFPRNLFLKYLPQDFDILC 145
            ++ L T I      L+ +    L  + +  DV SVK    E    L+  ++        
Sbjct: 59  KIIFLCTPIQLILPTLEKL-IPHLSPTAIVTDVASVKTAIAEPASQLWSGFIG------- 110

Query: 146 THPM-----FGPESAKSSWENLPFMYDKVRI-----GNDEERIKRVDKFLDVFAKEGCRM 195
            HPM      G + A+    NL F  +   +       D E++  +          G ++
Sbjct: 111 GHPMAGTAAQGIDGAEE---NL-F-VNAPYVLTPTEYTDPEQLACLRSV---LEPLGVKI 162

Query: 196 VEMSCFDHDKYAA 208
              +  DHD+  A
Sbjct: 163 YLCTPADHDQAVA 175

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Length = 341

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 35/191 (18%), Positives = 65/191 (34%), Gaps = 20/191 (10%)

Query: 33  KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL---HP 89
            + ++G G  G  L +     +H++  ++RS               ADL    +      
Sbjct: 10  PVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAED 69

Query: 90  DVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPM 149
            +++L+  + +  S+L ++       +  F DV+SVK    +       Q   +  +HPM
Sbjct: 70  ALIVLAVPMTAIDSLLDAV--HTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVG-SHPM 126

Query: 150 FGPESAKSSWEN------------LPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVE 197
            G  +A S W              + F         +   I      + +    G  +V 
Sbjct: 127 AG--TANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVP 184

Query: 198 MSCFDHDKYAA 208
                HD  AA
Sbjct: 185 SRVGPHDAAAA 195

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 52.4 bits (125), Expect = 6e-08
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 15/137 (10%)

Query: 33  KIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDV 91
            +A++G  G  G  + +      H L     +       Q +  P   D +   +   DV
Sbjct: 13  TVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPL-TDGDGWID-EADV 70

Query: 92  VLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDIL------C 145
           V+L+      + V + I   R++  T+ + + +   +        +P+  DI       C
Sbjct: 71  VVLALPDNIIEKVAEDI-VPRVRPGTIVLILDAAAPYAG-----VMPERADITYFIGHPC 124

Query: 146 THPMFGPESAKSSWENL 162
             P+F  E+  ++  + 
Sbjct: 125 HPPLFNDETDPAARTDY 141

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 29/204 (14%), Positives = 55/204 (26%), Gaps = 24/204 (11%)

Query: 31  SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPD 90
           SL +  +G G   +F  +     +    + SRS        ++     A L    E    
Sbjct: 2   SLVLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPE-LNG 60

Query: 91  VVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMF 150
           VV +       ++V   +              LS + F ++      P            
Sbjct: 61  VVFVIVPDRYIKTVANHLNLGD-AVLVHCSGFLSSEIFKKSGRASIHP-------NFSFS 112

Query: 151 GPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFD----HDKY 206
             E A    + + F      +  DE  +  V     +  +   +   +        H   
Sbjct: 113 SLEKALEMKDQIVFG-----LEGDERGLPIV---KKIAEEISGKYFVIPSEKKKAYHLAA 164

Query: 207 AAGSQFVTHTMG---RVLERFGVE 227
              S F         R+    G++
Sbjct: 165 VIASNFPVALAYLSKRIYTLLGLD 188

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 2/144 (1%)

Query: 21  QLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFAD 80
             H + +    +KIAV+G G  G+ +A A A   H + + +R   +   R + +A     
Sbjct: 9   HHHHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPP 68

Query: 81  LNDLCELHPDVVLLSTSILSTQS--VLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP 138
            +     HP V L + + ++  +  V+ +        +       ++           L 
Sbjct: 69  FSQWLPEHPHVHLAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLD 128

Query: 139 QDFDILCTHPMFGPESAKSSWENL 162
               +  T      +S     +  
Sbjct: 129 FSHGMPPTLNPVNTDSLGEQIQRT 152

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215

 Score = 48.4 bits (115), Expect = 8e-07
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 20 SQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRS 63
          S      V   + K+ ++G G+F + LA         ++V SR+
Sbjct: 17 SDSSLAKVPDEAPKVGILGSGDFARSLATRLVGSGFKVVVGSRN 60

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRS 63
               + + G G+FG+ L     +  ++++  SR+
Sbjct: 17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRN 51

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Length = 209

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 23 HTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA 68
          H + +    ++I + G GN GQ +   F    H +  +   D +  
Sbjct: 11 HHENLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATT 56

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 49/313 (15%), Positives = 99/313 (31%), Gaps = 84/313 (26%)

Query: 9   AIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNF---GQFLAKAFARHHH-TLLVHSRSD 64
           A+D    +  + ++          KI  +   N       L       +       SRSD
Sbjct: 167 ALDVCLSYKVQCKM--------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 65  HSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTSIL---STQSVLKSIPFQ-------R 112
           HS  ++ ++++   A+L  L +   + + +L    +L          +           R
Sbjct: 219 HSSNIKLRIHS-IQAELRRLLKSKPYENCLL----VLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 113 LKRSTLFVDVLSVKEFP-------------RNLFLKYLPQDFDIL----C-THP----MF 150
            K+ T F+   +                  ++L LKYL      L      T+P    + 
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 151 GPESAK---SSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRM--VEMSCFDHDK 205
             ES +   ++W+N    +  V   N ++    ++  L+V      R     +S F    
Sbjct: 334 A-ESIRDGLATWDN----WKHV---NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS- 384

Query: 206 YAAGSQFVTHTMGRVLERFGVESSPINTKGYETLLD------LVD-NTKGDSFDLYYGLF 258
                    H    +L     +    +      +++      LV+   K  +  +   ++
Sbjct: 385 --------AHIPTILLSLIWFDVIKSDV---MVVVNKLHKYSLVEKQPKESTISI-PSIY 432

Query: 259 MYNKNSLEQLQRL 271
           +  K  LE    L
Sbjct: 433 LELKVKLENEYAL 445

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 42/279 (15%), Positives = 87/279 (31%), Gaps = 72/279 (25%)

Query: 53  HHHTLLVHSRSDHS-PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI--- 108
           HHH         +    +       F  + +  C+   DV  +  SILS + +   I   
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFD--CK---DVQDMPKSILSKEEI-DHIIMS 57

Query: 109 PFQRLKRSTLFVDVL------SVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL 162
               +  +      L       V++F      + L  ++  L +      E  + S    
Sbjct: 58  K-DAVSGTLRLFWTLLSKQEEMVQKF----VEEVLRINYKFLMSP--IKTEQRQPSMMTR 110

Query: 163 PFMYDKVRIGNDEE--------RIK------------RVDKFLDVFAKEGC---RMVEMS 199
            ++  + R+ ND +        R++            R  K + +    G     +    
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 200 CFDHDKYAAGSQFVTHTM-GRV--LERFGVESSPINTKGYETLLDLVDNTKGDSFDLYYG 256
           C  +         V   M  ++  L      +SP      ET+L+++         L Y 
Sbjct: 171 CLSYK--------VQCKMDFKIFWL-NLKNCNSP------ETVLEMLQK-------LLYQ 208

Query: 257 LFMYNKNSLEQLQRLEMAFESIKQQLFGQMF-RVYRKEL 294
           +     +  +    +++   SI+ +L   +  + Y   L
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Length = 144

 Score = 44.0 bits (105), Expect = 8e-06
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 13/102 (12%)

Query: 33  KIAVIGFGNFGQFLAKAFARHHHTLLVHSRS-DHSPAVRQQLNAPFFADLNDLCEL--HP 89
           KI ++G G     +A  F+   + + V  R+ DH  A  ++    +   +ND+  L  + 
Sbjct: 23  KILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYV-LINDIDSLIKNN 81

Query: 90  DVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRN 131
           DV++ +TS  S   +   +  + L    LF+D L     P N
Sbjct: 82  DVIITATS--SKTPI---VEERSLMPGKLFID-LGN---PPN 114

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Length = 236

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 33 KIAVIGFGNFGQFLAKAFARHHHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDV 91
           + +IG+G  G+FLA+   R+   +  +         +           +++  +   DV
Sbjct: 2  LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKM--------VRGIDEFLQREMDV 53

Query: 92 VLLSTS 97
           + + S
Sbjct: 54 AVEAAS 59

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 33  KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPD-- 90
            +AV+G G  G  +A+ FA     + V +R     A   ++    F  ++   +   D  
Sbjct: 157 NVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPF-HISKAAQELRDVD 215

Query: 91  -VVLLSTSILSTQSVLKSIPFQRLKRSTLFVDV 122
             +    +++ T +VL       +   T  +D+
Sbjct: 216 VCINTIPALVVTANVLA-----EMPSHTFVIDL 243

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 26  YVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLV---HSRSDHSPAVRQQLNAPFFADLN 82
           Y +S ++K+  IGFG     +A    +     +     + ++      ++L     A + 
Sbjct: 19  YFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVA 78

Query: 83  DLCELHPDVVLLSTSILSTQSVLKSIP--FQRLKRSTLFVD 121
           ++     DV+    S+++ Q+ L+        L    L+ D
Sbjct: 79  EVAG-ECDVIF---SLVTAQAALEVAQQAGPHLCEGALYAD 115

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* Length = 354

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 5/82 (6%)

Query: 20 SQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP----AVRQQLNA 75
            +    +    ++ A++G G        A  +H     +    D  P    A  ++  A
Sbjct: 2  HMIVIPPITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGA 61

Query: 76 PFFADLNDLCEL-HPDVVLLST 96
             A L D+      D+V+L+T
Sbjct: 62 RGHASLTDMLAQTDADIVILTT 83

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} Length = 315

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--NAPFFADLNDLCE 86
          ++ +++A+IG G +G+   +  A      LV   +  +P     +       +D   +  
Sbjct: 8  NSPVRLALIGAGRWGKNYIRTIAGLPGAALV-RLASSNPDNLALVPPGCVIESDWRSVVS 66

Query: 87 L-HPDVVLLST 96
              + V+++T
Sbjct: 67 APEVEAVIIAT 77

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} Length = 307

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 31  SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ----------LNAPFFAD 80
           SLKI +IG G+ G   A   + +H   +V  R + + A++ +            A   AD
Sbjct: 2   SLKIGIIGGGSVGLLCAYYLSLYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSAD 61

Query: 81  LNDLCELHPDVVLLSTSILSTQSVLKSI 108
            +   +   D+++++      QSV  S+
Sbjct: 62  TSINSD--FDLLVVTVKQHQLQSVFSSL 87

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Length = 212

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 32 LKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPA 68
          +++A++G  GN G+ LA   A   H ++V SR +    
Sbjct: 1  MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAE 38

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} Length = 354

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP----AVRQQLNAPFFADLNDLCEL 87
          + +A IG G +   +A A+ +     LV      +        ++ N    A +  L   
Sbjct: 6  VGVAAIGLGRWAYVMADAYTKSEKLKLVTC-YSRTEDKREKFGKRYNCAGDATMEALLA- 63

Query: 88 HPDV 91
            DV
Sbjct: 64 REDV 67

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 9/69 (13%)

Query: 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLND------LCE 86
          KI + G G+ G  LA+      H +    R   S            AD+        +  
Sbjct: 5  KILIAGCGDLGLELARRLTAQGHEVTGLRR---SAQPMPAGVQTLIADVTRPDTLASIVH 61

Query: 87 LHPDVVLLS 95
          L P++++  
Sbjct: 62 LRPEILVYC 70

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRS-DHSPAVRQQLNAPFFADLNDLCEL 87
          S ++KI +IG G     + K   +  H L++   S + S  + +QL  P+     DL + 
Sbjct: 1  SNAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLID- 59

Query: 88 HPDVVLLS 95
            D+V+L 
Sbjct: 60 QVDLVILG 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	335
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	100.0
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	100.0
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	100.0
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	100.0
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	100.0
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	100.0
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.96
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.93
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.92
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.91
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.89
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.88
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.88
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.88
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.85
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.84
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.84
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.82
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.82
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.82
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.81
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.81
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.8
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.8
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.8
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.79
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.78
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.78
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.78
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.76
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.75
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.75
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.73
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.73
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.73
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.71
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.7
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.7
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.69
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.69
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.69
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.68
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.68
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.68
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.67
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.67
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.67
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.67
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.66
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.65
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.65
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.64
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.63
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.62
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.61
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.6
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.59
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.59
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.58
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.57
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.57
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.57
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.56
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.56
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.56
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.55
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.55
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.54
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.54
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.54
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.53
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.53
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.51
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.49
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.48
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.48
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.48
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.48
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.47
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.46
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.17
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.44
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.43
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.36
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.36
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.35
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.35
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.35
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.34
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.33
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.33
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.32
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.32
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.31
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.31
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.31
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.3
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.28
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.27
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.26
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.26
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.25
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.25
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.25
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.25
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.22
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.22
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.22
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.21
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.21
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.2
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.19
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	99.18
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.18
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.16
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.16
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.14
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.14
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.12
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	99.02
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.01
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.98
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.94
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.92
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.9
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.9
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.88
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.88
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.87
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.85
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.83
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.82
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.81
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.81
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.78
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.76
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.73
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.73
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.71
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.65
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.64
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.64
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.63
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.62
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.61
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.61
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.6
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.6
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.59
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.59
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	98.59
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.58
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.58
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.56
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.56
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.55
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.55
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.54
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.53
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.52
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.52
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.51
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.5
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.5
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.48
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.48
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.48
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.47
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.47
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.46
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.45
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.44
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.42
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.41
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.41
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.41
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.38
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.38
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.37
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.37
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.36
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.36
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.35
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.35
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.34
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.33
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.33
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.33
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.32
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.32
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.32
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.31
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.31
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.31
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.3
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.3
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.3
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.29
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.29
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.29
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.28
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.27
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.26
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.26
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.25
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.25
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.24
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.24
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	98.24
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	98.22
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.21
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.21
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.17
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	98.17
4had_A	350	Probable oxidoreductase protein; structural genomi	98.16
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.16
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.14
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.13
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	98.13
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.13
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.12
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.1
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.09
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.07
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	98.07
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.06
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.06
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.05
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.04
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.04
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	98.03
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.03
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.03
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.02
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.01
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.01
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.01
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.01
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	98.0
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	98.0
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.0
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.99
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	97.96
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.96
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	97.96
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.95
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.95
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	97.95
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.94
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	97.94
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.92
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	97.92
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	97.92
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.91
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.9
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	97.89
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.88
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.88
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.86
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.85
4h3v_A	390	Oxidoreductase domain protein; structural genomics	97.85
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.84
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.83
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.81
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.79
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.79
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	97.79
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.78
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.78
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.76
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.75
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	97.74
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.73
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.73
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.72
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.71
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.71
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.71
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.7
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.7
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.7
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.7
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	97.68
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	97.68
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.66
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.66
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	97.66
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.66
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.65
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	97.62
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.62
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.6
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.59
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.58
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	97.57
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.56
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.55
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.55
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.52
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.5
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.49
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.49
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.48
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.46
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.43
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	97.43
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.42
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.38
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	97.38
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.37
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.36
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.35
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.34
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	97.33
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.32
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.32
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	97.32
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.31
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.31
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.29
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.25
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.24
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	97.22
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.22
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.21
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.19
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.18
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.16
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.15
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.13
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.13
1lnq_A	336	MTHK channels, potassium channel related protein;	97.11
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	97.1
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.09
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.08
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.05
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.05
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.02
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.02
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.02
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.99
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	96.98
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	96.98
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.97
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.95
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.94
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.92
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.92
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	96.87
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.87
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.84
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	96.83
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.82
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.78
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.77
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.74
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.74
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	96.72
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	96.72
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.71
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.7
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.7
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.67
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.67
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.67
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.65
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.65
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.64
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.63
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.62
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.61
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.61
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.59
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.59
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.57
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.56
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.55
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.54
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	96.54
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.54
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	96.52
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.52
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.52
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.51
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.5
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.49
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.49
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.48
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.48
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.47
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.46
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	96.46
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.45
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.45
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.45
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.44
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.42
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.41
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.39
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.37
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	96.37
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	96.37
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.37
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.36
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.35
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	96.34
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.34
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.34
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.33
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.32
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	96.31
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.29
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.29
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	96.29
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.28
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.25
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.25
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.25
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.24
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.24
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.24
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.23
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.2
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	96.2
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	96.2
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	96.19
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	96.18
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	96.18
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.16
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.16
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.15
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.15
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	96.12
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.12
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.11
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.1
2csu_A	457	457AA long hypothetical protein; structural genomi	96.09
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.09
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.09
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	96.08
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.06
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.06
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	96.02
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.02
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.98
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.97
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.96
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	95.95
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.95
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.94
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	95.93
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.93
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	95.93
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.91
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.91
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	95.9
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.89
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	95.89
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.88
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	95.87
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.86
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	95.86
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	95.83
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.82
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.82
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	95.81
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.8
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	95.8
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	95.79
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	95.78
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	95.78
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	95.77
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.75
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.75
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.74
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.72
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	95.72
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.71
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	95.71
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	95.7
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.7
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.69
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.69
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	95.67
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.66
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.64
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	95.64
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.63
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.63
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	95.62
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.6
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.6
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	95.59
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.58
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	95.58
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.57
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	95.55
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.51
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.48

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=100.00  E-value=6.4e-46  Score=350.16  Aligned_cols=260  Identities=16%  Similarity=0.187  Sum_probs=223.4

Q ss_pred             ccCCCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhCCCc--eecChhh-HhhcCCCEEEEecCchh
Q 044593           26 YVKSTSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLNAP--FFADLND-LCELHPDVVLLSTSILS  100 (335)
Q Consensus        26 ~~~~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~g~~--~~~~~~~-~~~~~aDvVIlavp~~~  100 (335)
                      +..+..|||+|||+|+||+++|..|++.|+  +|++|||+++..+.+.+.|+.  ..+++.+ ++ .+||+||+|||+..
T Consensus        28 ~~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~-~~aDvVilavp~~~  106 (314)
T 3ggo_A           28 LKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVED-FSPDFVMLSSPVRT  106 (314)
T ss_dssp             -CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGG-GCCSEEEECSCGGG
T ss_pred             hhhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhh-ccCCEEEEeCCHHH
Confidence            344556899999999999999999999999  999999999888878888884  4567777 66 89999999999999


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc------ccccCCCcceecccccCCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGND  174 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~  174 (335)
                      +.++++++. +.++++++|+|++|+|..+.+.+.+.++.  +|+++|||+|++.+      .+.|.|.++++++    .+
T Consensus       107 ~~~vl~~l~-~~l~~~~iv~d~~Svk~~~~~~~~~~l~~--~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~----~~  179 (314)
T 3ggo_A          107 FREIAKKLS-YILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTP----TK  179 (314)
T ss_dssp             HHHHHHHHH-HHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEECCCCCCCSGGGCCTTTTTTCEEEECC----CT
T ss_pred             HHHHHHHHh-hccCCCcEEEECCCCcHHHHHHHHHhcCC--CEEecCcccCCcccchhhhhhhhhcCCEEEEEe----CC
Confidence            999999985 67899999999999999888888877654  79999999998863      1345677777753    34


Q ss_pred             hhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHc----CC---CCCCCCCcchhhHHHHHHHhh
Q 044593          175 EERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERF----GV---ESSPINTKGYETLLDLVDNTK  247 (335)
Q Consensus       175 ~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~----~~---~~~~~~~~gf~~~~rl~~~ia  247 (335)
                      ..+++.++.++++|+.+|++++++++++||+++|++||+||+++++|++.    +.   ....++++|||+++||    +
T Consensus       180 ~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~~l~~~~~~~~~~~~~~~~~a~~~frd~tRi----a  255 (314)
T 3ggo_A          180 KTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRI----A  255 (314)
T ss_dssp             TSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSCCGGGCCTTTTTTHHHH----T
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhhccccHHHHHHH----h
Confidence            44567889999999999999999999999999999999999999888643    22   1235889999999998    8


Q ss_pred             CCChHhHHHHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          248 GDSFDLYYGLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       248 ~~~~~lw~~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      ++||+||+|||..|+++ ++.|++|++.|+++++.|+++|.+.+.+ +|.++
T Consensus       256 ~~~p~~w~di~~~N~~~~~~~l~~~~~~l~~l~~~l~~~d~~~l~~-~~~~a  306 (314)
T 3ggo_A          256 KSDPIMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVE-YLKEV  306 (314)
T ss_dssp             TSCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHH-HHHHH
T ss_pred             cCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            99999999999999998 6999999999999999999999999887 56555

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=100.00  E-value=2.2e-46  Score=356.37  Aligned_cols=257  Identities=16%  Similarity=0.190  Sum_probs=219.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhh---cCCCEEEEecCchhHHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCE---LHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~---~~aDvVIlavp~~~~~~vl  105 (335)
                      ...+||+|||+|+||+++|..|+++|++|++||++++..+.+.+.|+....++.+++.   .++|+||+|||+..+.+++
T Consensus         6 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl   85 (341)
T 3ktd_A            6 DISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLL   85 (341)
T ss_dssp             CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHH
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHH
Confidence            3467999999999999999999999999999999998888788899977778776651   2579999999999999999


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCC-c-----ccccCCCcceecccccCCChhHHH
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPES-A-----KSSWENLPFMYDKVRIGNDEERIK  179 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~-~-----~~~~~g~~~i~~~~~~~~~~~~~~  179 (335)
                      +++. + ++++++|+|++|+|..+.+.+.+.++ +.+|+++|||+|++. +     .+.|.|.++++++.    +..+.+
T Consensus        86 ~~l~-~-~~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~----~~~~~e  158 (341)
T 3ktd_A           86 DAVH-T-HAPNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFD----QLFDGT  158 (341)
T ss_dssp             HHHH-H-HCTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCG----GGTSSC
T ss_pred             HHHH-c-cCCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhhhHHhcCCeEEEEeC----CCCChh
Confidence            9985 4 48999999999999998888887765 568999999999984 2     24567778888652    222233


Q ss_pred             --------HHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCC----CCCCCCcchhhHHHHHHHhh
Q 044593          180 --------RVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVE----SSPINTKGYETLLDLVDNTK  247 (335)
Q Consensus       180 --------~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~----~~~~~~~gf~~~~rl~~~ia  247 (335)
                              .++.++++|+.+|+++++|++++||+++|++||+||+++++|+.....    ...++++||||++||    +
T Consensus       159 ~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~aL~~~~~~~~~~~~~laa~gfrd~tRi----a  234 (341)
T 3ktd_A          159 DINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAETLAIVGDNGGALSLSLAAGSYRDSTRV----A  234 (341)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTGG----G
T ss_pred             hhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHccccHHHHHHH----h
Confidence                    788999999999999999999999999999999999999998764321    124789999999998    8


Q ss_pred             CCChHhHHHHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          248 GDSFDLYYGLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       248 ~~~~~lw~~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      ++||+||++||..|+++ ++.|++|++.|+++++.|+++| +.+.+ +|.++
T Consensus       235 ~s~p~lw~di~~~N~~~~~~~l~~~~~~L~~l~~~l~~~d-~~l~~-~~~~~  284 (341)
T 3ktd_A          235 GTDPGLVRAMCESNAGPLVKALDEALAILHEAREGLTAEQ-PNIEQ-LADNG  284 (341)
T ss_dssp             GSCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSSS-CCCHH-HHHHH
T ss_pred             cCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHccc-HHHHH-HHHHH
Confidence            99999999999999987 5999999999999999999999 77666 67666

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=100.00  E-value=9.8e-38  Score=292.09  Aligned_cols=261  Identities=18%  Similarity=0.239  Sum_probs=199.4

Q ss_pred             HhhhhhcCCC-ccccchhhcccCCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhH
Q 044593            7 IRAIDAAQPF-DYESQLHTQYVKSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDL   84 (335)
Q Consensus         7 ~r~~~~~~~~-~~~~~~~~~~~~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~   84 (335)
                      +|++|..|.. .|     .+..+ .++||+||| +|.||+++|..|.+.|++|++|||+++.             +..+.
T Consensus         2 ~~~~~~~~~~~~~-----~~~~~-~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~   62 (298)
T 2pv7_A            2 MRESYANENQFGF-----KTINS-DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESI   62 (298)
T ss_dssp             -----------CC-----CCSCT-TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHH
T ss_pred             hhhHHhhhhccCc-----cccCC-CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------CHHHH
Confidence            4667766653 22     12222 356999999 9999999999999999999999998752             34455


Q ss_pred             hhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcc
Q 044593           85 CELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPF  164 (335)
Q Consensus        85 ~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~  164 (335)
                      + .+||+||+|||+..+.++++++. +.++++++|+|++|+|..+.+.+.+.++  .+|+++|||+|++.  ..+.|.++
T Consensus        63 ~-~~aDvVilavp~~~~~~vl~~l~-~~l~~~~iv~~~~svk~~~~~~~~~~~~--~~~v~~hP~~g~~~--~~~~g~~~  136 (298)
T 2pv7_A           63 L-ANADVVIVSVPINLTLETIERLK-PYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPMFGADI--ASMAKQVV  136 (298)
T ss_dssp             H-TTCSEEEECSCGGGHHHHHHHHG-GGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEECSCTTC--SCCTTCEE
T ss_pred             h-cCCCEEEEeCCHHHHHHHHHHHH-hhcCCCcEEEECCCCCcHHHHHHHHhcC--CCEEeeCCCCCCCc--hhhcCCeE
Confidence            6 78999999999999999999985 6788999999999999888887777664  57999999999985  34567766


Q ss_pred             eecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHc----CCC---CCCCCCcchh
Q 044593          165 MYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERF----GVE---SSPINTKGYE  237 (335)
Q Consensus       165 i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~----~~~---~~~~~~~gf~  237 (335)
                      ++++.    +  +.+.++.++++|+.+|++++++++++||.++|+++|+||++++++...    +.+   ...+++++|+
T Consensus       137 ~l~~~----~--~~~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~~~la~~~f~  210 (298)
T 2pv7_A          137 VRCDG----R--FPERYEWLLEQIQIWGAKIYQTNATEHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYR  210 (298)
T ss_dssp             EEEEE----E--CGGGTHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHH
T ss_pred             EEecC----C--CHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcCHHHH
Confidence            77542    1  234567889999999999999999999999999999999988777543    222   1247889999


Q ss_pred             hHHHHHHHhhCCChHhHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCch
Q 044593          238 TLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSAE  299 (335)
Q Consensus       238 ~~~rl~~~ia~~~~~lw~~I~~~N~~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~  299 (335)
                      +...++.|+++++|.||++|+..|+.+...|+.|++.|+++++.|+++|.+.+.+ +|.++.
T Consensus       211 ~~~~~~~ria~~~p~~~~di~~sn~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~-~~~~a~  271 (298)
T 2pv7_A          211 LELAMIGRLFAQDAELYADIIMDKSENLAVIETLKQTYDEALTFFENNDRQGFID-AFHKVR  271 (298)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence            9433333448999999999999999874499999999999999999999998877 554443

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=100.00  E-value=2.3e-36  Score=280.91  Aligned_cols=259  Identities=17%  Similarity=0.277  Sum_probs=209.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHhCCCc--eecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQLNAP--FFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~~~g~~--~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      |++|||+|||+|.||+++|..|.+.  |++|++||++++..+.+.+.|+.  .+.++.+++ .++|+||+|||+....++
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~-~~aDvVilavp~~~~~~v   82 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFA-ALADVIILAVPIKKTIDF   82 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTG-GGCSEEEECSCHHHHHHH
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhh-cCCCEEEEcCCHHHHHHH
Confidence            5578999999999999999999988  57999999998877667677773  456776666 789999999999999999


Q ss_pred             Hhhccccc-cCCccEEEEcCCCCchHHHHHHhhCCC-CCceEeccccCCCCCc------ccccCCCcceecccccCCChh
Q 044593          105 LKSIPFQR-LKRSTLFVDVLSVKEFPRNLFLKYLPQ-DFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGNDEE  176 (335)
Q Consensus       105 l~~l~~~~-l~~~~iVvd~~SvK~~~~~~l~~~l~~-~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~~~  176 (335)
                      ++++. +. ++++++|+|+++++..+.+.+.+.++. +.+|++.|||+|++..      .+.|.|.++++++.    ...
T Consensus        83 ~~~l~-~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~----~~~  157 (290)
T 3b1f_A           83 IKILA-DLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPS----CLT  157 (290)
T ss_dssp             HHHHH-TSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEEC----TTC
T ss_pred             HHHHH-hcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecC----CCC
Confidence            99985 67 889999999999987766777777765 6789999999986642      12345655565431    122


Q ss_pred             HHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHc----CCC---CCCCCCcchhhHHHHHHHhhCC
Q 044593          177 RIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERF----GVE---SSPINTKGYETLLDLVDNTKGD  249 (335)
Q Consensus       177 ~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~----~~~---~~~~~~~gf~~~~rl~~~ia~~  249 (335)
                      +.+.++.++++|+.+|++++++++++||.+++.+||++|+++.++.+.    +.+   ...+.+++|++++|+    +++
T Consensus       158 ~~~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~s~~~~~~a~~~~~~~~~~g~~~~~~~~la~~~~~~~~rl----a~~  233 (290)
T 3b1f_A          158 KPNTIPALQDLLSGLHARYVEIDAAEHDCVTSQISHFPHIIASSLMKQAGDFSESHEMTKHFAAGGFRDMTRI----AES  233 (290)
T ss_dssp             CTTHHHHHHHHTGGGCCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCTHHHHHCCHHHHHTTGG----GGS
T ss_pred             CHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhHHhhccccHHhhhhh----hcC
Confidence            345678899999999999999999999999999999999988776542    211   124778999999988    688


Q ss_pred             ChHhHHHHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          250 SFDLYYGLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       250 ~~~lw~~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      +|.||.+++..|+.. .+.++.|++.|+.+++.|+++|.+.+++ +|.++
T Consensus       234 ~p~~~~~~~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~-~~~~~  282 (290)
T 3b1f_A          234 EPGMWTSILLTNQEAVLDRIENFKQRLDEVSNLIKARDENAIWA-FFNQS  282 (290)
T ss_dssp             CHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            999999999999987 6999999999999999999999999888 66554

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=100.00  E-value=6.5e-35  Score=269.94  Aligned_cols=255  Identities=16%  Similarity=0.190  Sum_probs=209.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhCCCc--eecChhhHhhc-CCCEEEEecCchhHHHHH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLNAP--FFADLNDLCEL-HPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~g~~--~~~~~~~~~~~-~aDvVIlavp~~~~~~vl  105 (335)
                      +|||+|||+|.||++++..|.+.|+  +|++||++++..+.+.+.|+.  ..+++.+.+ . ++|+||+|||+..+.+++
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~aDvVilavp~~~~~~v~   79 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVE-DFSPDFVMLSSPVRTFREIA   79 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGG-GTCCSEEEECSCHHHHHHHH
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHh-cCCCCEEEEcCCHHHHHHHH
Confidence            3689999999999999999999998  999999998877777778875  355676776 8 999999999999999999


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcc------cccCCCcceecccccCCChhHHH
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAK------SSWENLPFMYDKVRIGNDEERIK  179 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~------~~~~g~~~i~~~~~~~~~~~~~~  179 (335)
                      .++. +.++++++|+|+++++....+.+.+.++.  .+++.|||+|++...      +.+.+.++++++    ....+.+
T Consensus        80 ~~l~-~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~----~~~~~~~  152 (281)
T 2g5c_A           80 KKLS-YILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTP----TKKTDKK  152 (281)
T ss_dssp             HHHH-HHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSSTTTTCEEEECC----CSSSCHH
T ss_pred             HHHH-hhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhHHhCCCCEEEec----CCCCCHH
Confidence            9884 57889999999999998777777777654  399999999876421      234566666653    2233456


Q ss_pred             HHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHH----cCCC---CCCCCCcchhhHHHHHHHhhCCChH
Q 044593          180 RVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLER----FGVE---SSPINTKGYETLLDLVDNTKGDSFD  252 (335)
Q Consensus       180 ~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~----~~~~---~~~~~~~gf~~~~rl~~~ia~~~~~  252 (335)
                      .++.++++|+.+|++++++++++||.++++++|+||++++++.+    .+.+   ...+.+++|++++|+    +.++|.
T Consensus       153 ~~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~----~~~~p~  228 (281)
T 2g5c_A          153 RLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRI----AKSDPI  228 (281)
T ss_dssp             HHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGCCTTTGGGC-------CCSCHH
T ss_pred             HHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhhccccHHHHhHH----hcCCHH
Confidence            78899999999999999999999999999999999998776643    2322   235789999999998    679999


Q ss_pred             hHHHHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          253 LYYGLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       253 lw~~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      +|.+|+.+|+.. ++.|+.|++.|+.+++.++++|.+.+++ +|.++
T Consensus       229 ~~~~~~~sn~~~~~~~l~~~~~~l~~~~~~i~~~d~~~l~~-~~~~~  274 (281)
T 2g5c_A          229 MWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVE-YLKEV  274 (281)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            999999999976 6999999999999999999999999888 56544

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=100.00  E-value=2.2e-32  Score=252.58  Aligned_cols=252  Identities=19%  Similarity=0.258  Sum_probs=207.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc--eecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP--FFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~--~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      |||+|||+|.||++++..|.+.|++|++|||+++..+.+.+.|+.  ...++.++  .++|+||+|+|+..+.++++++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~D~vi~av~~~~~~~~~~~l~   78 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL--QTAKIIFLCTPIQLILPTLEKLI   78 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG--TTCSEEEECSCHHHHHHHHHHHG
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh--CCCCEEEEECCHHHHHHHHHHHH
Confidence            689999999999999999999999999999998877667777774  45566665  58999999999999999999985


Q ss_pred             ccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc-c-----cccCCCcceecccccCCChhHHHHHHH
Q 044593          110 FQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA-K-----SSWENLPFMYDKVRIGNDEERIKRVDK  183 (335)
Q Consensus       110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~-~-----~~~~g~~~i~~~~~~~~~~~~~~~~~~  183 (335)
                       +.++++++|+|++++|....+.+.+.++   ++++.||++|++.. +     +.+.+.++++++    .+..+.+..+.
T Consensus        79 -~~~~~~~~vv~~~~~~~~~~~~~~~~~~---~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~----~~~~~~~~~~~  150 (279)
T 2f1k_A           79 -PHLSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTP----TEYTDPEQLAC  150 (279)
T ss_dssp             -GGSCTTCEEEECCSCCHHHHHHHHHHST---TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEE----CTTCCHHHHHH
T ss_pred             -hhCCCCCEEEECCCCcHHHHHHHHHHhC---CEeecCcccCCccCCHHHHhHHHhCCCcEEEec----CCCCCHHHHHH
Confidence             6788999999999998877777776654   68999999987652 1     234555555543    22234567889


Q ss_pred             HHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCC--C-------CCCCCCcchhhHHHHHHHhhCCChHhH
Q 044593          184 FLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGV--E-------SSPINTKGYETLLDLVDNTKGDSFDLY  254 (335)
Q Consensus       184 v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~--~-------~~~~~~~gf~~~~rl~~~ia~~~~~lw  254 (335)
                      ++++|+.+|++++++++.+||.++++++|+||.++.++.....  +       ...+.+++|++++|+    +.++|.+|
T Consensus       151 v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~----~~~~p~~~  226 (279)
T 2f1k_A          151 LRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRV----GGGNPELG  226 (279)
T ss_dssp             HHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTG----GGSCHHHH
T ss_pred             HHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCcccchhcc----cCCCHHHH
Confidence            9999999999999999999999999999999999988865321  1       124678899999988    67999999


Q ss_pred             HHHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          255 YGLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       255 ~~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      .+++.+|+.. ++.|+.|++.|+.++..+.++|.+.+.. .|.++
T Consensus       227 ~~~~~s~~~~~~~~l~~~~~~l~~~~~~i~~~d~~a~~~-~~~~~  270 (279)
T 2f1k_A          227 TMMATYNQRALLKSLQDYRQHLDQLITLISNQQWPELHR-LLQQT  270 (279)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH-HHHHH
Confidence            9999999987 6999999999999999999999998777 55444

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.96  E-value=3.1e-30  Score=245.39  Aligned_cols=242  Identities=14%  Similarity=0.146  Sum_probs=190.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-HHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK-  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~-  106 (335)
                      ...|+|+|||+|.||+++|..|++.|++|+++|++++. .+.+.+.|+... ++.+++ .++|+||+|||+....+++. 
T Consensus        14 l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~-~~aDvVilavp~~~~~~v~~~   91 (338)
T 1np3_A           14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAV-AAADVVMILTPDEFQGRLYKE   91 (338)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHH-HTCSEEEECSCHHHHHHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHH-hcCCEEEEeCCcHHHHHHHHH
Confidence            34679999999999999999999999999999999865 667778888665 777777 79999999999999999998 


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCc-ccccC---CCcceecccccCCChhHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESA-KSSWE---NLPFMYDKVRIGNDEERIKRV  181 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~-~~~~~---g~~~i~~~~~~~~~~~~~~~~  181 (335)
                      ++. +.++++++|+|++|++.    .+.+.. +.+..|++.|| .||... .+.|.   |.++++++.. .   .+.+..
T Consensus        92 ~i~-~~l~~~~ivi~~~gv~~----~~~~~~~~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~-~---~~~~a~  161 (338)
T 1np3_A           92 EIE-PNLKKGATLAFAHGFSI----HYNQVVPRADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQ-D---ASGNAK  161 (338)
T ss_dssp             HTG-GGCCTTCEEEESCCHHH----HTTSSCCCTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEE-C---SSSCHH
T ss_pred             HHH-hhCCCCCEEEEcCCchh----HHHhhcCCCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecC-C---CCHHHH
Confidence            885 67899999999987643    233333 44567999999 566532 12333   7787776421 1   123456


Q ss_pred             HHHHHHHHhcCC-E--EEEeChHHHHHHHHHhhh------hHHHHHHHH---HHcCCCCC--------------CC-CCc
Q 044593          182 DKFLDVFAKEGC-R--MVEMSCFDHDKYAAGSQF------VTHTMGRVL---ERFGVESS--------------PI-NTK  234 (335)
Q Consensus       182 ~~v~~l~~~~G~-~--v~~~~~~eHD~~~A~~s~------lph~la~aL---~~~~~~~~--------------~~-~~~  234 (335)
                      +.+.++++.+|+ +  ++.+++++||...++++|      +||+++.++   ++.|.+..              .+ ..+
T Consensus       162 ~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a~~e~~~~~~~~~~~~~~g  241 (338)
T 1np3_A          162 NVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEG  241 (338)
T ss_dssp             HHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHhc
Confidence            788899999998 6  899999999999999999      999998877   66655421              23 567


Q ss_pred             chhhHHHHHHHhhCCChHhHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 044593          235 GYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRVYRK  292 (335)
Q Consensus       235 gf~~~~rl~~~ia~~~~~lw~~I~~~N~~~~~~l~~~~~~l~~l~~~l~~~~~~~~~~  292 (335)
                      ||+++ |+    ++++|.+|.||+..|+ .++  ++|++.|+++++.|+++  +.+++
T Consensus       242 g~~~~-r~----a~s~p~~~~d~~~~~~-~~~--~~~~~~l~~~~~~i~~~--~~~~~  289 (338)
T 1np3_A          242 GIANM-NY----SISNNAEYGEYVTGPE-VIN--AESRAAMRNALKRIQDG--EYAKM  289 (338)
T ss_dssp             HHHHH-HH----HSCHHHHHHHHHHHHH-HSC--HHHHHHHHHHHHHHHTT--HHHHH
T ss_pred             CHHHH-HH----hcCCHHHHhhhhcCCc-ccc--HHHHHHHHHHHHHHhCC--HHHHH
Confidence            88887 75    8999999999999999 434  89999999999999984  34455

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.93  E-value=2.2e-25  Score=206.66  Aligned_cols=232  Identities=14%  Similarity=0.120  Sum_probs=166.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      +|||+|||+ |.||++++..|.+.|++|++|||+++..+.+.+.|+... +..+.+ .++|+||+|+|+..+.++++++.
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~-~~aDvVi~av~~~~~~~v~~~l~   88 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWI-DEADVVVLALPDNIIEKVAEDIV   88 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGG-GTCSEEEECSCHHHHHHHHHHHG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHh-cCCCEEEEcCCchHHHHHHHHHH
Confidence            579999999 999999999999999999999999877666666776543 555666 78999999999999999999985


Q ss_pred             ccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc----ccccCCC-------cceecccccCCChhHH
Q 044593          110 FQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA----KSSWENL-------PFMYDKVRIGNDEERI  178 (335)
Q Consensus       110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~----~~~~~g~-------~~i~~~~~~~~~~~~~  178 (335)
                       +.++++++|+|+++. . ..+.+.+ +..+.+|++.||++|++..    ...+.|.       ..++.+  .+   .+.
T Consensus        89 -~~l~~~~ivv~~s~~-~-~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~--~~---~~~  159 (286)
T 3c24_A           89 -PRVRPGTIVLILDAA-A-PYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCAL--MQ---GPE  159 (286)
T ss_dssp             -GGSCTTCEEEESCSH-H-HHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEE--EE---SCT
T ss_pred             -HhCCCCCEEEECCCC-c-hhHHHHh-hhCCCeEEecCCCCccccccccchhhccCcccccccceeeeec--cC---CCH
Confidence             678899999996543 2 3344444 3335689999999998732    1123442       222221  11   234


Q ss_pred             HHHHHHHHHHHhcCC---EEEEeChHHHHHH-HHHh--hhhHHHHHHH--HHH----cCCCCC---CCCCcchhhHHHHH
Q 044593          179 KRVDKFLDVFAKEGC---RMVEMSCFDHDKY-AAGS--QFVTHTMGRV--LER----FGVESS---PINTKGYETLLDLV  243 (335)
Q Consensus       179 ~~~~~v~~l~~~~G~---~v~~~~~~eHD~~-~A~~--s~lph~la~a--L~~----~~~~~~---~~~~~gf~~~~rl~  243 (335)
                      +.++.++++|+.+|.   +++++++++||.+ .+++  ++.+|+++.+  |..    .+++..   .+..++|+....  
T Consensus       160 ~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~~~~~~--  237 (286)
T 3c24_A          160 EHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIA--  237 (286)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--
Confidence            567889999999999   8999999999999 8888  8999987654  532    355421   234455665543  


Q ss_pred             HHhhCCChHhHHHHHhhCHhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 044593          244 DNTKGDSFDLYYGLFMYNKNSLEQLQRLEMAFESIKQQLFGQMFRV  289 (335)
Q Consensus       244 ~~ia~~~~~lw~~I~~~N~~~~~~l~~~~~~l~~l~~~l~~~~~~~  289 (335)
                       ++..++|.+|.||+..|             ++.++..|+++|++.
T Consensus       238 -~~~~~~p~~~~di~~~~-------------i~~~~~~l~~~~~~~  269 (286)
T 3c24_A          238 -MWFGYSPKVPSDAALRL-------------MEFAKDIVVKEDWRE  269 (286)
T ss_dssp             -HHTTSSCCC---CCSTT-------------HHHHHHHHBCTTGGG
T ss_pred             -HHHhhCCchhHHHHHHH-------------HHHHHHHHhccCHHH
Confidence             34678999999999998             355555665555543

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.92  E-value=5.8e-24  Score=194.14  Aligned_cols=235  Identities=17%  Similarity=0.173  Sum_probs=169.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcC----CeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHH----HTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G----~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      |++|||+|||+|.||++++..|.++|    ++|++|||+++.      .|+....++.+++ .++|+||+|+|+..+.++
T Consensus         2 m~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~-~~~D~vi~~v~~~~~~~v   74 (262)
T 2rcy_A            2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELA-RHCDIIVCAVKPDIAGSV   74 (262)
T ss_dssp             CSSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHH-HHCSEEEECSCTTTHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHH-hcCCEEEEEeCHHHHHHH
Confidence            34679999999999999999999999    799999999876      5777777777776 789999999999999999


Q ss_pred             HhhccccccCCccEEEEcCCCCchHHHHHHhhCCCC---CceEeccccCCCCCcccccCCCcceecccccCCChhHHHHH
Q 044593          105 LKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD---FDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRV  181 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~---~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~  181 (335)
                      +.++. +.++++.+|+++++++..   .+++.++.+   +++++.||+.+.+       | ..++++    .+..+.+.+
T Consensus        75 ~~~l~-~~l~~~~vv~~~~gi~~~---~l~~~~~~~~~~v~~~p~~p~~~~~-------g-~~~~~~----~~~~~~~~~  138 (262)
T 2rcy_A           75 LNNIK-PYLSSKLLISICGGLNIG---KLEEMVGSENKIVWVMPNTPCLVGE-------G-SFIYCS----NKNVNSTDK  138 (262)
T ss_dssp             HHHSG-GGCTTCEEEECCSSCCHH---HHHHHHCTTSEEEEEECCGGGGGTC-------E-EEEEEE----CTTCCHHHH
T ss_pred             HHHHH-HhcCCCEEEEECCCCCHH---HHHHHhCCCCcEEEECCChHHHHcC-------C-eEEEEe----CCCCCHHHH
Confidence            99995 567555677777777653   455555543   3567788887653       3 334432    222345678


Q ss_pred             HHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHH---H----HHcCCCCC---CCCCcchhhHHHHHHHhhCCCh
Q 044593          182 DKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRV---L----ERFGVESS---PINTKGYETLLDLVDNTKGDSF  251 (335)
Q Consensus       182 ~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~a---L----~~~~~~~~---~~~~~gf~~~~rl~~~ia~~~~  251 (335)
                      +.++++|+.+|. +++++++.||.+++++++.||.+...   +    .+.+++..   .+..++|++..+++.+ .+.+|
T Consensus       139 ~~~~~ll~~~G~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~~~  216 (262)
T 2rcy_A          139 KYVNDIFNSCGI-IHEIKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKK-SDQPV  216 (262)
T ss_dssp             HHHHHHHHTSEE-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-CSSCH
T ss_pred             HHHHHHHHhCCC-EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCCH
Confidence            899999999996 99999999999999999998876332   2    23344321   2334556666665322 27789


Q ss_pred             HhHHHHHhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 044593          252 DLYYGLFMYNKNS-LEQLQRLEMAFESIKQQLFGQMFRVY  290 (335)
Q Consensus       252 ~lw~~I~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~~~  290 (335)
                      .||.+++..|+.. .+.++.|.+.  .++..+.+.....+
T Consensus       217 ~~l~d~~~~~~~t~~~~l~~l~~~--~~~~~~~~a~~~~~  254 (262)
T 2rcy_A          217 QQLKDNIVSPGGITAVGLYSLEKN--SFKYTVMNAVEAAC  254 (262)
T ss_dssp             HHHHHHHCCTTSHHHHHHHHHHHT--THHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHC--ChHHHHHHHHHHHH
Confidence            9999999888765 5777777654  45555555444443

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.91  E-value=9.6e-24  Score=195.52  Aligned_cols=229  Identities=14%  Similarity=0.100  Sum_probs=169.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC---eEEEEcCCCCcHHHHHh-CCCceecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH---TLLVHSRSDHSPAVRQQ-LNAPFFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~---~V~~~dr~~~~~~~a~~-~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      |++|||+|||+|+||++++..|.++|+   +|++|||+++..+.+.+ .|+..+.++.+++ +++|+||+|||+..+.++
T Consensus         1 M~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~-~~aDvVilav~p~~~~~v   79 (280)
T 3tri_A            1 MNTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGA-LNADVVVLAVKPHQIKMV   79 (280)
T ss_dssp             -CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHH-SSCSEEEECSCGGGHHHH
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHH-hcCCeEEEEeCHHHHHHH
Confidence            356899999999999999999999998   89999999987765554 5888888888887 899999999999999999


Q ss_pred             Hhhccccc-cCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHH
Q 044593          105 LKSIPFQR-LKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDK  183 (335)
Q Consensus       105 l~~l~~~~-l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~  183 (335)
                      ++++. +. ++++++|+++++.  ...+.+++.++.+.+++++||+.....+    .|...+.     +++..+++..+.
T Consensus        80 l~~l~-~~~l~~~~iiiS~~ag--i~~~~l~~~l~~~~~vvr~mPn~p~~v~----~g~~~l~-----~~~~~~~~~~~~  147 (280)
T 3tri_A           80 CEELK-DILSETKILVISLAVG--VTTPLIEKWLGKASRIVRAMPNTPSSVR----AGATGLF-----ANETVDKDQKNL  147 (280)
T ss_dssp             HHHHH-HHHHTTTCEEEECCTT--CCHHHHHHHHTCCSSEEEEECCGGGGGT----CEEEEEE-----CCTTSCHHHHHH
T ss_pred             HHHHH-hhccCCCeEEEEecCC--CCHHHHHHHcCCCCeEEEEecCChHHhc----CccEEEE-----eCCCCCHHHHHH
Confidence            99995 56 7888787776433  2246677777766789999997654432    2333222     234445677889


Q ss_pred             HHHHHHhcCCEEEEe-ChHHHHHHHHHhhhhHHHHHH---HHH----HcCCCCC---CCCCcchhhHHHHHHHhhCCChH
Q 044593          184 FLDVFAKEGCRMVEM-SCFDHDKYAAGSQFVTHTMGR---VLE----RFGVESS---PINTKGYETLLDLVDNTKGDSFD  252 (335)
Q Consensus       184 v~~l~~~~G~~v~~~-~~~eHD~~~A~~s~lph~la~---aL~----~~~~~~~---~~~~~gf~~~~rl~~~ia~~~~~  252 (335)
                      ++++|+.+|. ++++ ++++||.+++++++.|+.+..   +|.    +.|++..   .+....+....+++.+ .+.+|.
T Consensus       148 v~~l~~~iG~-~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~~G~a~~~~~-~~~~p~  225 (280)
T 3tri_A          148 AESIMRAVGL-VIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALE-TEQSVV  225 (280)
T ss_dssp             HHHHHGGGEE-EEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-CSSCHH
T ss_pred             HHHHHHHCCC-eEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCCHH
Confidence            9999999996 5555 778999999999999997642   333    3344321   2444556666666544 467899


Q ss_pred             hHHHHHhhCHhH-HHHHHHHH
Q 044593          253 LYYGLFMYNKNS-LEQLQRLE  272 (335)
Q Consensus       253 lw~~I~~~N~~~-~~~l~~~~  272 (335)
                      .|.+...++.-. .+.|+.|+
T Consensus       226 ~l~~~v~spgGtT~~~l~~le  246 (280)
T 3tri_A          226 QLRQFVTSPGGTTEQAIKVLE  246 (280)
T ss_dssp             HHHHHHCCTTSHHHHHHHHHH
T ss_pred             HHHHhccCCChHHHHHHHHHH
Confidence            999998888744 56666554

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.89  E-value=2.1e-22  Score=190.01  Aligned_cols=229  Identities=14%  Similarity=0.117  Sum_probs=164.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcC----CeEEEEcCCCC--cHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHH----HTLLVHSRSDH--SPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G----~~V~~~dr~~~--~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      +++|||+|||+|.||+++|..|.++|    ++|++|||+++  ..+.+.+.|+....++.+++ .++|+||+|||+..+.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~-~~aDvVilav~~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETV-QHSDVLFLAVKPHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHH-HHCSEEEECSCGGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHh-ccCCEEEEEeCHHHHH
Confidence            45689999999999999999999999    89999999986  55556677888777787777 7899999999999999


Q ss_pred             HHHhhccccccCCccEEEEcCC-CCchHHHHHHhhCCC---CCceEeccccCCCCCcccccCCCcceecccccCCChhHH
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLS-VKEFPRNLFLKYLPQ---DFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERI  178 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~S-vK~~~~~~l~~~l~~---~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~  178 (335)
                      +++.++. +.++++++|+|+++ ++.   +.+.+.++.   +.+++.+||+.+....    .|.. +++    +++..+.
T Consensus        99 ~vl~~l~-~~l~~~~ivvs~s~gi~~---~~l~~~l~~~~~~~~vv~~~p~~p~~~~----~g~~-v~~----~g~~~~~  165 (322)
T 2izz_A           99 FILDEIG-ADIEDRHIVVSCAAGVTI---SSIEKKLSAFRPAPRVIRCMTNTPVVVR----EGAT-VYA----TGTHAQV  165 (322)
T ss_dssp             HHHHHHG-GGCCTTCEEEECCTTCCH---HHHHHHHHTTSSCCEEEEEECCGGGGGT----CEEE-EEE----ECTTCCH
T ss_pred             HHHHHHH-hhcCCCCEEEEeCCCCCH---HHHHHHHhhcCCCCeEEEEeCCcHHHHc----CCeE-EEE----eCCCCCH
Confidence            9999985 67888999999854 432   333333321   3478999998877653    3332 332    2332335


Q ss_pred             HHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHH---HH----HHcCCCCC---CCCCcchhhHHHHHHHhhC
Q 044593          179 KRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGR---VL----ERFGVESS---PINTKGYETLLDLVDNTKG  248 (335)
Q Consensus       179 ~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~---aL----~~~~~~~~---~~~~~gf~~~~rl~~~ia~  248 (335)
                      +..+.++++|+.+|.. ++++++.||.+++++.+.|+.++.   ++    .+.+++..   .+...++....+++.+ .+
T Consensus       166 ~~~~~v~~ll~~~G~~-~~~~e~~~~~~~a~~g~gpa~~~~~~eala~a~~~~Gl~~~~a~~l~~~~~~g~~~~~~~-~~  243 (322)
T 2izz_A          166 EDGRLMEQLLSSVGFC-TEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLH-SE  243 (322)
T ss_dssp             HHHHHHHHHHHTTEEE-EECCGGGHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-CS
T ss_pred             HHHHHHHHHHHhCCCE-EEeCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cC
Confidence            6778899999999965 567899999999999888886542   22    23355421   2334556666665432 25


Q ss_pred             CChHhHHHHHhhCHhH-HHHHHHHHH
Q 044593          249 DSFDLYYGLFMYNKNS-LEQLQRLEM  273 (335)
Q Consensus       249 ~~~~lw~~I~~~N~~~-~~~l~~~~~  273 (335)
                      .+|.+|.+.+..|... ...++.+.+
T Consensus       244 ~~p~~l~~~v~sp~g~t~~~l~~l~~  269 (322)
T 2izz_A          244 QHPGQLKDNVSSPGGATIHALHVLES  269 (322)
T ss_dssp             SCHHHHHHHHCCTTSHHHHHHHHHHH
T ss_pred             CCHHHHHHhCCCCCcHHHHHHHHHHH
Confidence            5899999999887644 566665544

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.88  E-value=8.1e-23  Score=183.44  Aligned_cols=148  Identities=11%  Similarity=0.093  Sum_probs=123.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      ..|||+|||+|+||+++|..|+++|++|++||+.                  ++ + .++|  |+|||.+.+.+++.++.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~-~~aD--ilavP~~ai~~vl~~l~   62 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-I-RDFE--LVVIDAHGVEGYVEKLS   62 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-G-GGCS--EEEECSSCHHHHHHHHH
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-h-ccCC--EEEEcHHHHHHHHHHHH
Confidence            4689999999999999999999999999999983                  22 3 5789  99999999999999995


Q ss_pred             ccccCCccEEEEc-CCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHH
Q 044593          110 FQRLKRSTLFVDV-LSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVF  188 (335)
Q Consensus       110 ~~~l~~~~iVvd~-~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~  188 (335)
                       +.++++++|+|+ +|+|..+++.+.+   .+..|+++|||+|..          ++++.    .   +++.++.++++|
T Consensus        63 -~~l~~g~ivvd~sgs~~~~vl~~~~~---~g~~fvg~HPm~g~~----------~~i~a----~---d~~a~~~l~~L~  121 (232)
T 3dfu_A           63 -AFARRGQMFLHTSLTHGITVMDPLET---SGGIVMSAHPIGQDR----------WVASA----L---DELGETIVGLLV  121 (232)
T ss_dssp             -TTCCTTCEEEECCSSCCGGGGHHHHH---TTCEEEEEEEEETTE----------EEEEE----S---SHHHHHHHHHHH
T ss_pred             -HhcCCCCEEEEECCcCHHHHHHHHHh---CCCcEEEeeeCCCCc----------eeeeC----C---CHHHHHHHHHHH
Confidence             678999999997 5677777666653   356899999998642          34331    2   245778899999


Q ss_pred             HhcCCEEEEeChHHHHHHHHHhhhhHHHHHHH
Q 044593          189 AKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRV  220 (335)
Q Consensus       189 ~~~G~~v~~~~~~eHD~~~A~~s~lph~la~a  220 (335)
                      +.+|++++.+++++||.+.|.++|+||+++.+
T Consensus       122 ~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~  153 (232)
T 3dfu_A          122 GELGGSIVEIADDKRAQLAAALTYAGFLSTLQ  153 (232)
T ss_dssp             HHTTCEECCCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998754

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.88  E-value=1.4e-22  Score=184.05  Aligned_cols=225  Identities=13%  Similarity=0.119  Sum_probs=145.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC----eEEEEcCCCCcHHHHH-hCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH----TLLVHSRSDHSPAVRQ-QLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~----~V~~~dr~~~~~~~a~-~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      +|||+|||+|.||.+++..|.++|+    +|++|||+++..+.+. +.|+....++.+++ +++|+||+|||+..+.+++
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~-~~aDvVilav~~~~~~~v~   80 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVA-KNADILILSIKPDLYASII   80 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHH-HHCSEEEECSCTTTHHHHC
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHH-HhCCEEEEEeCHHHHHHHH
Confidence            4799999999999999999999998    9999999987765454 46888888888877 7899999999999999999


Q ss_pred             hhccccccCCccEEEE-cCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHH
Q 044593          106 KSIPFQRLKRSTLFVD-VLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKF  184 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd-~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v  184 (335)
                      +++. +.++++++|++ +++++.   +.+++.++.+.++++.||......+    .|...++     ..+..+++.++.+
T Consensus        81 ~~l~-~~l~~~~~vvs~~~gi~~---~~l~~~~~~~~~~v~~~p~~p~~~~----~g~~~~~-----~~~~~~~~~~~~~  147 (247)
T 3gt0_A           81 NEIK-EIIKNDAIIVTIAAGKSI---ESTENAFNKKVKVVRVMPNTPALVG----EGMSALC-----PNEMVTEKDLEDV  147 (247)
T ss_dssp             ---C-CSSCTTCEEEECSCCSCH---HHHHHHHCSCCEEEEEECCGGGGGT----CEEEEEE-----ECTTCCHHHHHHH
T ss_pred             HHHH-hhcCCCCEEEEecCCCCH---HHHHHHhCCCCcEEEEeCChHHHHc----CceEEEE-----eCCCCCHHHHHHH
Confidence            9995 67888888775 455543   4566666656678888886544332    2332222     2233445678899


Q ss_pred             HHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHH---HHH----HcCCCCC---CCCCcchhhHHHHHHHhhCCChHhH
Q 044593          185 LDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGR---VLE----RFGVESS---PINTKGYETLLDLVDNTKGDSFDLY  254 (335)
Q Consensus       185 ~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~---aL~----~~~~~~~---~~~~~gf~~~~rl~~~ia~~~~~lw  254 (335)
                      +++|+.+|. ++++++++||.+++++++.|+.+..   +|.    +.+++..   .+...++....+++.+ .+.+|..|
T Consensus       148 ~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~~~-~~~~p~~l  225 (247)
T 3gt0_A          148 LNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLE-TGIHPGEL  225 (247)
T ss_dssp             HHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-SCC-----
T ss_pred             HHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-cCCCHHHH
Confidence            999999996 8888999999999999999986543   332    3454421   1223344444444433 35567777


Q ss_pred             HHHHhhCHhH-HHHHHHH
Q 044593          255 YGLFMYNKNS-LEQLQRL  271 (335)
Q Consensus       255 ~~I~~~N~~~-~~~l~~~  271 (335)
                      .+...++.-. .+.|..|
T Consensus       226 ~~~v~spgG~t~~gl~~l  243 (247)
T 3gt0_A          226 KDMVCSPGGTTIEAVATL  243 (247)
T ss_dssp             ------------------
T ss_pred             HHhcCCCCchHHHHHHHH
Confidence            7766555432 4444443

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.88  E-value=1.3e-21  Score=178.38  Aligned_cols=237  Identities=16%  Similarity=0.215  Sum_probs=163.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-hCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-QLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      .+|||+|||+|.||..++..|.+.|++|.+|||+++..+... +.|+..+.++.+++ .++|+||+|+|+....+++.++
T Consensus         2 ~~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~D~Vi~~v~~~~~~~v~~~l   80 (259)
T 2ahr_A            2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLI-DQVDLVILGIKPQLFETVLKPL   80 (259)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHH-HTCSEEEECSCGGGHHHHHTTS
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHH-hcCCEEEEEeCcHhHHHHHHHh
Confidence            457999999999999999999999999999999987665443 45887777888877 7999999999988888888776


Q ss_pred             cccccCCccEEEEcC-CCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHH
Q 044593          109 PFQRLKRSTLFVDVL-SVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDV  187 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~-SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l  187 (335)
                      .     ++++|+++. +++.   +.+.+.++.+.+++..||.......    .|.. .++    .....+.+.++.++++
T Consensus        81 ~-----~~~~vv~~~~~~~~---~~l~~~~~~~~~~v~~~p~~~~~~~----~g~~-~i~----~~~~~~~~~~~~~~~l  143 (259)
T 2ahr_A           81 H-----FKQPIISMAAGISL---QRLATFVGQDLPLLRIMPNMNAQIL----QSST-ALT----GNALVSQELQARVRDL  143 (259)
T ss_dssp             C-----CCSCEEECCTTCCH---HHHHHHHCTTSCEEEEECCGGGGGT----CEEE-EEE----ECTTCCHHHHHHHHHH
T ss_pred             c-----cCCEEEEeCCCCCH---HHHHHhcCCCCCEEEEcCCchHHHc----CceE-EEE----cCCCCCHHHHHHHHHH
Confidence            2     677899885 4543   3455555544456654442211111    3322 222    1222245678889999


Q ss_pred             HHhcCCEEEEeChHHHHHHHHH-------hhhhHHHHHHHHHHcCCCCC---CCCCcchhhHHHHHHHhhCCChHhHHHH
Q 044593          188 FAKEGCRMVEMSCFDHDKYAAG-------SQFVTHTMGRVLERFGVESS---PINTKGYETLLDLVDNTKGDSFDLYYGL  257 (335)
Q Consensus       188 ~~~~G~~v~~~~~~eHD~~~A~-------~s~lph~la~aL~~~~~~~~---~~~~~gf~~~~rl~~~ia~~~~~lw~~I  257 (335)
                      |+.+| +++++++++||.++++       +.+++|.++.++.+.+++..   .+..+++++..+++.. .+.+|.+|.+.
T Consensus       144 l~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~l~~~  221 (259)
T 2ahr_A          144 TDSFG-STFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKT-SSQSPHDFIDA  221 (259)
T ss_dssp             HHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-SSSCHHHHHHH
T ss_pred             HHhCC-CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHh
Confidence            99999 7999999999999875       45666677766777776532   2445678888777543 23469999998


Q ss_pred             HhhCHhH-HHHHHHHHHHHHHHHHHHHhhHHH
Q 044593          258 FMYNKNS-LEQLQRLEMAFESIKQQLFGQMFR  288 (335)
Q Consensus       258 ~~~N~~~-~~~l~~~~~~l~~l~~~l~~~~~~  288 (335)
                      +..|... ...++.|.+  ..++..+.+....
T Consensus       222 ~~~p~~~~~~~~~~l~~--~g~~~~~~~a~~~  251 (259)
T 2ahr_A          222 ICSPGGTTIAGLMELER--LGLTATVSSAIDK  251 (259)
T ss_dssp             HCCTTSHHHHHHHHHHH--HTHHHHHHHHHHH
T ss_pred             CCCCChhHHHHHHHHHH--CChHHHHHHHHHH
Confidence            8877654 466666643  2344444444333

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.85  E-value=3e-20  Score=169.49  Aligned_cols=222  Identities=14%  Similarity=0.159  Sum_probs=156.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHh-CCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSPAVRQQ-LNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~~a~~-~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      |||+|||+|.||++++..|.+.| ++|++|||+++..+...+ .|+....+..+++  ++|+||+|+|+..+.+++.++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~--~~D~vi~~v~~~~~~~v~~~l~   78 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH--SDDVLILAVKPQDMEAACKNIR   78 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC--TTSEEEECSCHHHHHHHHTTCC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh--cCCEEEEEeCchhHHHHHHHhc
Confidence            68999999999999999999999 999999999876654444 5887766666653  7999999999888999999885


Q ss_pred             ccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHH
Q 044593          110 FQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFA  189 (335)
Q Consensus       110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~  189 (335)
                       +  + +++|+|+++....  +.+.+.++.+.+++.++|.......    .|...++.     .+..+.+.++.++++|+
T Consensus        79 -~--~-~~ivv~~~~g~~~--~~l~~~~~~~~~~v~~~~~~~~~~~----~g~~~i~~-----~~~~~~~~~~~~~~l~~  143 (263)
T 1yqg_A           79 -T--N-GALVLSVAAGLSV--GTLSRYLGGTRRIVRVMPNTPGKIG----LGVSGMYA-----EAEVSETDRRIADRIMK  143 (263)
T ss_dssp             -C--T-TCEEEECCTTCCH--HHHHHHTTSCCCEEEEECCGGGGGT----CEEEEEEC-----CTTSCHHHHHHHHHHHH
T ss_pred             -c--C-CCEEEEecCCCCH--HHHHHHcCCCCcEEEEcCCHHHHHc----CceEEEEc-----CCCCCHHHHHHHHHHHH
Confidence             4  5 8899999544332  6677777765567776543222211    33333321     22224567888999999


Q ss_pred             hcCCEEEEeC-hHHHHHHHHHhhhhHHHHHHHH-------HHcCCCCC---CCCCcchhhHHHHHHHhhCCChHhHHHHH
Q 044593          190 KEGCRMVEMS-CFDHDKYAAGSQFVTHTMGRVL-------ERFGVESS---PINTKGYETLLDLVDNTKGDSFDLYYGLF  258 (335)
Q Consensus       190 ~~G~~v~~~~-~~eHD~~~A~~s~lph~la~aL-------~~~~~~~~---~~~~~gf~~~~rl~~~ia~~~~~lw~~I~  258 (335)
                      .+|.++ +++ ++.||.++|++++.|+.++..+       .+.+.+..   .+...+++...+++.+ .+.+|.+|.+..
T Consensus       144 ~~g~~~-~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  221 (263)
T 1yqg_A          144 SVGLTV-WLDDEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQ-TGEDFEKLQKNV  221 (263)
T ss_dssp             TTEEEE-ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHT
T ss_pred             hCCCEE-EeCChhhccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHhc
Confidence            999876 787 8899999999998888765433       22344321   2334556666666543 234588999988


Q ss_pred             hhCHhH-HHHHHHHH
Q 044593          259 MYNKNS-LEQLQRLE  272 (335)
Q Consensus       259 ~~N~~~-~~~l~~~~  272 (335)
                      ..|... ...++.|.
T Consensus       222 ~~~~~~~~~~l~~l~  236 (263)
T 1yqg_A          222 TSKGGTTHEAVEAFR  236 (263)
T ss_dssp             CCTTSHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHH
Confidence            877754 46666653

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.84  E-value=5.3e-20  Score=172.60  Aligned_cols=177  Identities=10%  Similarity=0.088  Sum_probs=140.6

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHH
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVL  105 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl  105 (335)
                      ....+|||+|||+|.||..+|..|.+.|++|++|||+++..+.+.+.|+...+++.+++ +++|+||+|+|.. .+.+++
T Consensus        17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~-~~aDvvi~~vp~~~~~~~v~   95 (310)
T 3doj_A           17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVI-KKCKYTIAMLSDPCAALSVV   95 (310)
T ss_dssp             -CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHH-HHCSEEEECCSSHHHHHHHH
T ss_pred             ccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHH-HhCCEEEEEcCCHHHHHHHH
Confidence            34567899999999999999999999999999999999888777788988888888887 7899999999975 678888


Q ss_pred             ---hhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHH
Q 044593          106 ---KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRV  181 (335)
Q Consensus       106 ---~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~  181 (335)
                         +++. +.++++++|+|+++++....+.+.+.+. .+..|+. ||++|.....  ..|...++.    +++   .+.+
T Consensus        96 ~~~~~l~-~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a--~~g~l~i~~----gg~---~~~~  164 (310)
T 3doj_A           96 FDKGGVL-EQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKKPA--EDGQLIILA----AGD---KALF  164 (310)
T ss_dssp             HSTTCGG-GGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHH--HHTCEEEEE----EEC---HHHH
T ss_pred             hCchhhh-hccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHH--hcCCeEEEE----cCC---HHHH
Confidence               7774 5788999999999988766666655442 3567877 8999876532  245444443    333   4578


Q ss_pred             HHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          182 DKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       182 ~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      +.++++|+.+|.+++++++.....++.++++...
T Consensus       165 ~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~  198 (310)
T 3doj_A          165 EESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIM  198 (310)
T ss_dssp             HHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEeCCcCHHHHHHHHHHHHH
Confidence            8999999999999999987777777887766554

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.84  E-value=3.5e-20  Score=171.75  Aligned_cols=172  Identities=15%  Similarity=0.139  Sum_probs=139.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCc-hhHHHHH---hh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSI-LSTQSVL---KS  107 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~-~~~~~vl---~~  107 (335)
                      |||+|||+|.||..+|..|.++|++|++|||+++..+.+.+.|+...+++.+++ .++|+||+|+|. ..+.+++   ++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~~aDvvi~~vp~~~~~~~v~~~~~~   80 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVV-ESCPVTFAMLADPAAAEEVCFGKHG   80 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHH-HHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHH-hcCCEEEEEcCCHHHHHHHHcCcch
Confidence            799999999999999999999999999999999888777888988888888887 789999999995 5788888   77


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD  186 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~  186 (335)
                      +. +.++++++|+|+++++....+.+.+.+. .+..|+. ||++|+....  ..+...++.    +++   ++.++.+++
T Consensus        81 l~-~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a--~~g~l~~~~----gg~---~~~~~~~~~  149 (287)
T 3pef_A           81 VL-EGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPA--EDGTLIILA----AGD---RNLYDEAMP  149 (287)
T ss_dssp             HH-HHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHH--HHTCEEEEE----EEC---HHHHHHHHH
T ss_pred             Hh-hcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHH--hcCCEEEEE----eCC---HHHHHHHHH
Confidence            74 5688999999999887766665554443 3567887 8999877532  234433442    333   457788999


Q ss_pred             HHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          187 VFAKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       187 l~~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      +|+.+|.+++++++..|+.++.+++++..
T Consensus       150 ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~  178 (287)
T 3pef_A          150 GFEKMGKKIIHLGDVGKGAEMKLVVNMVM  178 (287)
T ss_dssp             HHHHHEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred             HHHHhCCCeEEeCCCCHHHHHHHHHHHHH
Confidence            99999999999998999999988877654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.82  E-value=2.2e-19  Score=167.74  Aligned_cols=172  Identities=11%  Similarity=0.072  Sum_probs=134.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-ecChhhHhhcCCCEEEEecCch-hHHHHH--
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-FADLNDLCELHPDVVLLSTSIL-STQSVL--  105 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-~~~~~~~~~~~aDvVIlavp~~-~~~~vl--  105 (335)
                      +.|||+|||+|.||..+|..|.++|++|++|||+++..+.+.+.|... ..++.+++ +++|+||+|+|.. .+..++  
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~-~~aDvvi~~vp~~~~~~~v~~~   84 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFA-GVVDALVILVVNAAQVRQVLFG   84 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTT-TTCSEEEECCSSHHHHHHHHC-
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHH-hcCCEEEEECCCHHHHHHHHhC
Confidence            468999999999999999999999999999999998887777888877 77888887 7999999999986 577777  


Q ss_pred             -hhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHH
Q 044593          106 -KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDK  183 (335)
Q Consensus       106 -~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~  183 (335)
                       +++. +.++++++|+|+++++....+.+.+.+. .+..|+. ||++|.....  ..|...++.    +++   ++.++.
T Consensus        85 ~~~l~-~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a--~~g~l~~~~----gg~---~~~~~~  153 (303)
T 3g0o_A           85 EDGVA-HLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGAVKA--AQGEMTVMA----SGS---EAAFTR  153 (303)
T ss_dssp             -CCCG-GGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHH--HTTCEEEEE----ECC---HHHHHH
T ss_pred             hhhHH-hhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhh--hcCCeEEEe----CCC---HHHHHH
Confidence             7774 6788999999999988766666655443 3567887 9999877432  245444442    333   467889


Q ss_pred             HHHHHHhcCCEEEEeCh-HHHHHHHHHhhhh
Q 044593          184 FLDVFAKEGCRMVEMSC-FDHDKYAAGSQFV  213 (335)
Q Consensus       184 v~~l~~~~G~~v~~~~~-~eHD~~~A~~s~l  213 (335)
                      ++++|+.+|.+++++++ ......+.+++++
T Consensus       154 ~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~  184 (303)
T 3g0o_A          154 LKPVLDAVASNVYRISDTPGAGSTVKIIHQL  184 (303)
T ss_dssp             HHHHHHHHEEEEEEEESSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEECCCCCcHHHHHHHHHHH
Confidence            99999999999988876 4555566665544

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.82  E-value=3.2e-19  Score=166.68  Aligned_cols=173  Identities=14%  Similarity=0.126  Sum_probs=139.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhh--
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKS--  107 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~--  107 (335)
                      |+||||||+|.||..+|+.|.++||+|++|||+++..+...+.|.....++.+++ +.+|+||+|+|... +.+++..  
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~-~~~dvv~~~l~~~~~v~~V~~~~~   81 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAV-QGADVVISMLPASQHVEGLYLDDD   81 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHH-TTCSEEEECCSCHHHHHHHHHSSS
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHH-hcCCceeecCCchHHHHHHHhchh
Confidence            5699999999999999999999999999999999888878888999999999998 89999999999876 5677754  


Q ss_pred             -ccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          108 -IPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       108 -l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                       +. +.+++|++|+|++++.......+.+.+ ..+..|+.+ |+.|...+..  .|...++.    +++   ++.+++++
T Consensus        82 g~~-~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDa-PVsGg~~~A~--~G~L~imv----GG~---~~~~~~~~  150 (300)
T 3obb_A           82 GLL-AHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDA-PVSGGTAGAA--AGTLTFMV----GGD---AEALEKAR  150 (300)
T ss_dssp             SST-TSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEEC-CEESCHHHHH--HTCEEEEE----ESC---HHHHHHHH
T ss_pred             hhh-hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEec-CCCCCHHHHH--hCCEEEEE----eCC---HHHHHHHH
Confidence             32 567899999999999877777776655 356789875 9998775422  46544442    444   46789999


Q ss_pred             HHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      ++|+.+|.+++++.+.-....+.+++++..
T Consensus       151 p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~  180 (300)
T 3obb_A          151 PLFEAMGRNIFHAGPDGAGQVAKVCNNQLL  180 (300)
T ss_dssp             HHHHHHEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCEEEeCCccHHHHHHHHHHHHH
Confidence            999999999999988777777887665533

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.81  E-value=9.8e-19  Score=164.17  Aligned_cols=176  Identities=13%  Similarity=0.181  Sum_probs=131.7

Q ss_pred             hcccCCCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC--CcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh
Q 044593           24 TQYVKSTSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD--HSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        24 ~~~~~~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~--~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      +++..+.+|||+|||+|.||..+|..|.++|+ +|++|||++  +..+.+.+.|+...+++.+++ .++|+||+|||+..
T Consensus        17 ~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~-~~aDvVi~~vp~~~   95 (312)
T 3qsg_A           17 NLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVA-GECDVIFSLVTAQA   95 (312)
T ss_dssp             --------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHH-HHCSEEEECSCTTT
T ss_pred             cccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHH-hcCCEEEEecCchh
Confidence            33344567899999999999999999999999 999999974  566667788988888888887 78999999999999


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-C--CCceEeccccCCCCCcccccCCCcceecccccCCChhH
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-Q--DFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEER  177 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~--~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~  177 (335)
                      ..+++.++. +.++++++|+|++|++......+.+.+. .  +..|+. +|++|+....   .+...+++    +++.. 
T Consensus        96 ~~~~~~~l~-~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd-~pv~g~~~~~---~g~l~i~v----gg~~~-  165 (312)
T 3qsg_A           96 ALEVAQQAG-PHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAA-VAVMSAVKPH---GHRVPLVV----DGDGA-  165 (312)
T ss_dssp             HHHHHHHHG-GGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEE-EEECSCSTTT---GGGSEEEE----ESTTH-
T ss_pred             HHHHHHhhH-hhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEe-ccccCCchhh---cCCEEEEe----cCChH-
Confidence            888888885 6788999999999998776666655443 2  567876 5999976432   34333442    34432 


Q ss_pred             HHHHHHHHHHHHhcCCEEEEeCh-HHHHHHHHHhhhhH
Q 044593          178 IKRVDKFLDVFAKEGCRMVEMSC-FDHDKYAAGSQFVT  214 (335)
Q Consensus       178 ~~~~~~v~~l~~~~G~~v~~~~~-~eHD~~~A~~s~lp  214 (335)
                          +.++++|+.+|.+++++++ -.--..+.++++..
T Consensus       166 ----~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~  199 (312)
T 3qsg_A          166 ----RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAV  199 (312)
T ss_dssp             ----HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHH
Confidence                6788999999999999986 34455666665543

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.81  E-value=3.8e-19  Score=164.72  Aligned_cols=173  Identities=13%  Similarity=0.125  Sum_probs=135.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHH---h
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVL---K  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl---~  106 (335)
                      +|||+|||+|.||..+|..|.++|++|++|||+++..+.+.+.|+...+++.+++ +++|+||+|+|.. .+.+++   +
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~~advvi~~v~~~~~~~~v~~~~~   79 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVC-AACDITIAMLADPAAAREVCFGAN   79 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHH-HHCSEEEECCSSHHHHHHHHHSTT
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHH-HcCCEEEEEcCCHHHHHHHHcCch
Confidence            4689999999999999999999999999999999887777777888888888887 7899999999986 688888   7


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                      .+. +.++++++|+|+++++....+.+.+.+. .+..|+.. |++|.....  ..|...++.    +++   ++.++.++
T Consensus        80 ~l~-~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a--~~g~l~~~~----gg~---~~~~~~~~  148 (287)
T 3pdu_A           80 GVL-EGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA-PVSGTKKPA--EDGTLIILA----AGD---QSLFTDAG  148 (287)
T ss_dssp             CGG-GTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEECCHHHH--HHTCEEEEE----EEC---HHHHHHTH
T ss_pred             hhh-hcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC-CccCCHHHH--hcCCEEEEE----eCC---HHHHHHHH
Confidence            774 5788999999999987766666655443 35678774 888876421  134433432    333   45778899


Q ss_pred             HHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      ++|+.+|.+++++++......+.++++...
T Consensus       149 ~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~  178 (287)
T 3pdu_A          149 PAFAALGKKCLHLGEVGQGARMKLVVNMIM  178 (287)
T ss_dssp             HHHHHHEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCEEEcCCCChHHHHHHHHHHHH
Confidence            999999999999987766777777665543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.80  E-value=7.8e-22  Score=197.80  Aligned_cols=234  Identities=14%  Similarity=0.120  Sum_probs=167.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~  106 (335)
                      ...+++|+|||+|+||+++|+.|+..|++|++||++.. .+.+.+.|+... ++++++ .+||+|++|+|.. .+..++.
T Consensus       139 ~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~e~~-~~aDvV~l~~P~~~~t~~~i~  215 (529)
T 1ygy_A          139 EIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS-PARAAQLGIELL-SLDDLL-ARADFISVHLPKTPETAGLID  215 (529)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC-HHHHHHHTCEEC-CHHHHH-HHCSEEEECCCCSTTTTTCBC
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCcEEc-CHHHHH-hcCCEEEECCCCchHHHHHhC
Confidence            45688999999999999999999999999999999874 344666787654 788877 7899999999998 6667665


Q ss_pred             h-ccccccCCccEEEEcCCCCchHHHHHHhhCCC------CCceEeccccCCCCCcccccCCCcceecccccCCChhHHH
Q 044593          107 S-IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ------DFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIK  179 (335)
Q Consensus       107 ~-l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~------~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~  179 (335)
                      + + .+.++++++|+|++.........+.+.+..      ...|++.|||+.    ...|...+++++|..-+......+
T Consensus       216 ~~~-~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~----~~L~~~~~vilTPh~~~~t~ea~~  290 (529)
T 1ygy_A          216 KEA-LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTD----SPLFELAQVVVTPHLGASTAEAQD  290 (529)
T ss_dssp             HHH-HTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSC----CGGGGCTTEEECSSCSSCBHHHHH
T ss_pred             HHH-HhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCC----chHHhCCCEEEccccCCCCHHHHH
Confidence            4 3 246889999999986544433444444433      235789999852    246777788888753222222111


Q ss_pred             H--HHHHHHHHHhcCCEE----EEeC-hHHHHHHHHHhhhhHHH-HHHHHHHcCCCCCCCCCcchhhHHHHHHHhhCCCh
Q 044593          180 R--VDKFLDVFAKEGCRM----VEMS-CFDHDKYAAGSQFVTHT-MGRVLERFGVESSPINTKGYETLLDLVDNTKGDSF  251 (335)
Q Consensus       180 ~--~~~v~~l~~~~G~~v----~~~~-~~eHD~~~A~~s~lph~-la~aL~~~~~~~~~~~~~gf~~~~rl~~~ia~~~~  251 (335)
                      .  ...+++++..++..+    +.++ +++||.+.      ||+ ++..+..   ....+.+++|++++++    ++++|
T Consensus       291 ~~~~~~~~~l~~~l~~~~~~~~v~~~~~~~hd~i~------P~l~La~~lg~---~~~qla~g~~~ditri----a~G~~  357 (529)
T 1ygy_A          291 RAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVA------PWLDLVRKLGV---LAGVLSDELPVSLSVQ----VRGEL  357 (529)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTBCSCCSTTSCTTTT------THHHHHHHHHH---HHHHTSSSCCSEEEEE----EEEGG
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccCCcccccchhhh------hHHHHHHHHHH---HHHHHhCCCceEEEEE----EEeec
Confidence            1  112555666665543    6788 89999876      665 1222211   1124667889999987    89999


Q ss_pred             HhHHHHHhhCHhHH-HHHHHHHHHHHHHHHHHH
Q 044593          252 DLYYGLFMYNKNSL-EQLQRLEMAFESIKQQLF  283 (335)
Q Consensus       252 ~lw~~I~~~N~~~~-~~l~~~~~~l~~l~~~l~  283 (335)
                      .+ .+++..|+.++ ..|+.+.+.+..+++++.
T Consensus       358 ~~-~~i~~~n~a~l~g~L~~~~~~~~~~vnA~~  389 (529)
T 1ygy_A          358 AA-EEVEVLRLSALRGLFSAVIEDAVTFVNAPA  389 (529)
T ss_dssp             GG-SCCHHHHHHHHHHHTGGGSCTTCCCCCHHH
T ss_pred             cc-cCCcHHHHHHHHHhcCCCCCCCccccCHHH
Confidence            99 88999999885 889988888777777744

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.80  E-value=7.9e-19  Score=163.55  Aligned_cols=172  Identities=14%  Similarity=0.133  Sum_probs=137.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHhhcc
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLKSIP  109 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~~l~  109 (335)
                      .|||+|||+|.||..+|..|.++|++|++|||+++..+.+.+.|+...+++.+++ + +|+||+|+|.. .+.++++++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~-aDvvi~~vp~~~~~~~v~~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVA-A-ADLIHITVLDDAQVREVVGELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHT-T-SSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHH-h-CCEEEEECCChHHHHHHHHHHH
Confidence            5799999999999999999999999999999999888778888998888999987 7 99999999965 6788888885


Q ss_pred             ccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHH
Q 044593          110 FQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVF  188 (335)
Q Consensus       110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~  188 (335)
                       +.++++++|+|+++++....+.+.+.+. .+..|+. +|++|+....  ..+...++.    +++   ++.++.++++|
T Consensus        93 -~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a--~~g~l~~~~----gg~---~~~~~~~~~ll  161 (296)
T 3qha_A           93 -GHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVD-APVSGGAAAA--ARGELATMV----GAD---REVYERIKPAF  161 (296)
T ss_dssp             -TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEE-CCEESCHHHH--HHTCEEEEE----ECC---HHHHHHHHHHH
T ss_pred             -HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEe-CCCcCCHHHH--hcCCccEEe----cCC---HHHHHHHHHHH
Confidence             6788999999999988766666655543 3567776 5998876431  234433432    343   45788999999


Q ss_pred             HhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          189 AKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       189 ~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      +.+|.+++++++......+.++++...
T Consensus       162 ~~~g~~~~~~g~~g~a~~~Kl~~N~~~  188 (296)
T 3qha_A          162 KHWAAVVIHAGEPGAGTRMKLARNMLT  188 (296)
T ss_dssp             HHHEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred             HHHcCCeEEcCChhHHHHHHHHHHHHH
Confidence            999999999977777777877776554

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.79  E-value=2.7e-18  Score=157.04  Aligned_cols=169  Identities=18%  Similarity=0.227  Sum_probs=126.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCCCcHHHHH-hCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSDHSPAVRQ-QLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~~~~~~a~-~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      +|||+|||+|.||..++..|.+.|++ |.+|||+++..+.+. ..|+....++.+++ .++|+||+|+|.....++++++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~Dvvi~av~~~~~~~v~~~l   88 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVN-PYAKLYIVSLKDSAFAELLQGI   88 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSC-SCCSEEEECCCHHHHHHHHHHH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHh-cCCCEEEEecCHHHHHHHHHHH
Confidence            47999999999999999999999998 899999987665443 45887777887777 7899999999999989999888


Q ss_pred             cccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccC---CCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          109 PFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMF---GPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPma---G~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                      . +.++++++|+|+++....  +.+.+.++.   .-..||++   |+..  ..+.+.++++.    +.   +++.++.++
T Consensus        89 ~-~~~~~~~ivv~~s~~~~~--~~l~~~~~~---~~~~~~~~~~~g~~~--~~~~~~~~~v~----~~---~~~~~~~~~  153 (266)
T 3d1l_A           89 V-EGKREEALMVHTAGSIPM--NVWEGHVPH---YGVFYPMQTFSKQRE--VDFKEIPFFIE----AS---STEDAAFLK  153 (266)
T ss_dssp             H-TTCCTTCEEEECCTTSCG--GGSTTTCSS---EEEEEECCCC---CC--CCCTTCCEEEE----ES---SHHHHHHHH
T ss_pred             H-hhcCCCcEEEECCCCCch--HHHHHHHHh---ccCcCCceecCCCch--hhcCCCeEEEe----cC---CHHHHHHHH
Confidence            4 568899999999877543  334444433   11245554   4332  12344554441    22   245678899


Q ss_pred             HHHHhcCCEEEEeChHH---HHHHHHHhhhhHH
Q 044593          186 DVFAKEGCRMVEMSCFD---HDKYAAGSQFVTH  215 (335)
Q Consensus       186 ~l~~~~G~~v~~~~~~e---HD~~~A~~s~lph  215 (335)
                      ++|+.+|.+++++++++   ||.+++++++++.
T Consensus       154 ~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~  186 (266)
T 3d1l_A          154 AIASTLSNRVYDADSEQRKSLHLAAVFTCNFTN  186 (266)
T ss_dssp             HHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999876   8888999888874

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.78  E-value=3.6e-18  Score=160.68  Aligned_cols=169  Identities=16%  Similarity=0.074  Sum_probs=129.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCC-------CcHHHHHhCCCceec-ChhhHhhcCCCEEEEecCchh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSD-------HSPAVRQQLNAPFFA-DLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~-------~~~~~a~~~g~~~~~-~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ++|||+|||+|.||..+|..|.++| ++|++|||++       +..+.+.+.|+  .+ ++.+++ +++|+||+|||+..
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~-~~aDvVi~avp~~~   99 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGI-ACADVVLSLVVGAA   99 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGG-GGCSEEEECCCGGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHH-hcCCEEEEecCCHH
Confidence            4689999999999999999999999 9999999997       23344556677  55 777777 78999999999999


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHH
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIK  179 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~  179 (335)
                      ..+.+.++. +.++++++|+|+++++....+.+.+.+. .+..|+. +|++||+...   .+...++    ++++..   
T Consensus       100 ~~~~~~~i~-~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d-~pv~g~~~a~---~g~l~i~----vgg~~~---  167 (317)
T 4ezb_A          100 TKAVAASAA-PHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVE-GAVMARVPPY---AEKVPIL----VAGRRA---  167 (317)
T ss_dssp             HHHHHHHHG-GGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEE-EEECSCSTTT---GGGSEEE----EESTTH---
T ss_pred             HHHHHHHHH-hhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe-ccCCCCchhh---cCCEEEE----EeCChH---
Confidence            888888885 6789999999999998777777766553 3567775 5999976432   3443344    244432   


Q ss_pred             HHHHHHHHHHhcCCEEEEeCh-HHHHHHHHHhhhhHH
Q 044593          180 RVDKFLDVFAKEGCRMVEMSC-FDHDKYAAGSQFVTH  215 (335)
Q Consensus       180 ~~~~v~~l~~~~G~~v~~~~~-~eHD~~~A~~s~lph  215 (335)
                        +.++++|+.+|.+++++++ ..-...+.++.+.-.
T Consensus       168 --~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~  202 (317)
T 4ezb_A          168 --VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMI  202 (317)
T ss_dssp             --HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHH
Confidence              6788999999999999986 455556666555433

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.78  E-value=2e-18  Score=161.00  Aligned_cols=173  Identities=12%  Similarity=0.123  Sum_probs=127.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH-HHHHh-hc
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST-QSVLK-SI  108 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~-~~vl~-~l  108 (335)
                      .+||||||+|.||..+|..|.++||+|++|||+++..+.+.+.|.....++.+++ +++|+||+|+|.+.. .+++. .+
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~-~~~dvvi~~l~~~~~~~~v~~~~~   83 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAI-TPGGIVFSVLADDAAVEELFSMEL   83 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGC-CTTCEEEECCSSHHHHHHHSCHHH
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHH-hcCCceeeeccchhhHHHHHHHHH
Confidence            4589999999999999999999999999999999888777788998888999988 899999999998763 44442 34


Q ss_pred             cccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHH
Q 044593          109 PFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDV  187 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l  187 (335)
                      . +.++++++|+|++++.....+.+.+.+. .+..|+.+ |+.|...+.  ..|...++.    +++   .+.+++++++
T Consensus        84 ~-~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~lda-pVsGg~~~a--~~g~l~im~----gG~---~~~~~~~~~~  152 (297)
T 4gbj_A           84 V-EKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGA-PIFARPEAV--RAKVGNICL----SGN---AGAKERIKPI  152 (297)
T ss_dssp             H-HHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEECCHHHH--HHTCCEEEE----EEC---HHHHHHHHHH
T ss_pred             H-hhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecC-CcCCCcccc--ccccceeec----ccc---hhHHHHHHHH
Confidence            2 4678999999999987766666665543 46788875 888876532  145444442    333   4577899999


Q ss_pred             HHhcCCEEEEeC-hHHHHHHHHHhhhhHH
Q 044593          188 FAKEGCRMVEMS-CFDHDKYAAGSQFVTH  215 (335)
Q Consensus       188 ~~~~G~~v~~~~-~~eHD~~~A~~s~lph  215 (335)
                      |+.+|.+++++. +......+.+++++..
T Consensus       153 l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~  181 (297)
T 4gbj_A          153 VENFVKGVFDFGDDPGAANVIKLAGNFMI  181 (297)
T ss_dssp             HHTTCSEEEECCSCTTHHHHHHHHHHHHH
T ss_pred             HHHhhCCeEEecCCccHHHHHHHHHHHHH
Confidence            999999988886 4456667777665543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.78  E-value=3.2e-18  Score=161.18  Aligned_cols=174  Identities=17%  Similarity=0.163  Sum_probs=136.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK-  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~-  106 (335)
                      ..+|||+|||+|.||..+|..|.+.|++|++|||+++..+.+.+.|+....++.+++ +++|+||+|+|.. .+..++. 
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~-~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAA-RDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHH-TTCSEEEECCSSHHHHHHHHTT
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHH-hcCCEEEEECCCHHHHHHHHcc
Confidence            456899999999999999999999999999999999887777777988888998888 8999999999964 6777776 


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHH
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKF  184 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v  184 (335)
                       .+. +.++++++|+|+++++....+.+.+.+. .+..|+. .|++|+....  ..|...++.    +++   ++.++.+
T Consensus       108 ~~~~-~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a--~~g~l~i~~----gg~---~~~~~~~  176 (320)
T 4dll_A          108 QGVA-AAMKPGSLFLDMASITPREARDHAARLGALGIAHLD-TPVSGGTVGA--EQGTLVIMA----GGK---PADFERS  176 (320)
T ss_dssp             TCHH-HHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECHHHHH--HHTCEEEEE----ESC---HHHHHHH
T ss_pred             hhHH-hhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEe-CCCcCCHhHH--hcCCeeEEe----CCC---HHHHHHH
Confidence             663 5688999999999988766666655442 3567887 4999876431  134433432    343   4577889


Q ss_pred             HHHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          185 LDVFAKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       185 ~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      +++|+.+ .+++++++.....++.+++++..
T Consensus       177 ~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~  206 (320)
T 4dll_A          177 LPLLKVF-GRATHVGPHGSGQLTKLANQMIV  206 (320)
T ss_dssp             HHHHHHH-EEEEEEESTTHHHHHHHHHHHHH
T ss_pred             HHHHHhc-CCEEEeCCccHHHHHHHHHHHHH
Confidence            9999999 88998877777777777766543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.76  E-value=2.9e-18  Score=163.88  Aligned_cols=171  Identities=13%  Similarity=0.139  Sum_probs=136.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCC---CEEEEecCchhHHHHHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHP---DVVLLSTSILSTQSVLK  106 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~a---DvVIlavp~~~~~~vl~  106 (335)
                      ++|||+|||+|.||..+|..|.++|++|++|||+++..+.+.+.|+....++.+++ .++   |+||+|||...+.+++.
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~-~~a~~~DvVi~~vp~~~v~~vl~   99 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFC-AKLVKPRVVWLMVPAAVVDSMLQ   99 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHH-HHSCSSCEEEECSCGGGHHHHHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHH-hcCCCCCEEEEeCCHHHHHHHHH
Confidence            46899999999999999999999999999999999888778888988888888887 677   99999999998899999


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                      ++. +.++++++|+|+++++......+.+.+ ..+..|+.+ |++|+..+.  ..|. .++    ++++   ++.++.++
T Consensus       100 ~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vda-pVsGg~~~a--~~G~-~im----~GG~---~~a~~~~~  167 (358)
T 4e21_A          100 RMT-PLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDV-GTSGGIFGL--ERGY-CLM----IGGE---KQAVERLD  167 (358)
T ss_dssp             HHG-GGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEE-EEECGGGHH--HHCC-EEE----EESC---HHHHHHTH
T ss_pred             HHH-hhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeC-CCCCCHHHH--hcCC-eee----ecCC---HHHHHHHH
Confidence            885 678999999999999865545454433 356788874 999887542  2454 333    2444   46788899


Q ss_pred             HHHHhcC--------------------CEEEEeChHHHHHHHHHhhhh
Q 044593          186 DVFAKEG--------------------CRMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       186 ~l~~~~G--------------------~~v~~~~~~eHD~~~A~~s~l  213 (335)
                      ++|+.+|                    ..++++.+......+.++++.
T Consensus       168 ~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~  215 (358)
T 4e21_A          168 PVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNG  215 (358)
T ss_dssp             HHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHH
T ss_pred             HHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHH
Confidence            9999999                    357888777777778776653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.75  E-value=8.9e-18  Score=155.42  Aligned_cols=166  Identities=13%  Similarity=0.073  Sum_probs=126.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-----------C--------------CceecChhh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-----------N--------------APFFADLND   83 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-----------g--------------~~~~~~~~~   83 (335)
                      |..+||+|||+|.||+.+|..|+++|++|++||++++..+.+.+.           |              +..++++.+
T Consensus         2 m~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~   81 (283)
T 4e12_A            2 TGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQ   81 (283)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHH
Confidence            346799999999999999999999999999999998765544332           1              345667777


Q ss_pred             HhhcCCCEEEEecCch--hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCC
Q 044593           84 LCELHPDVVLLSTSIL--STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWEN  161 (335)
Q Consensus        84 ~~~~~aDvVIlavp~~--~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g  161 (335)
                      ++ ++||+||+|+|.+  ....++.++. +.+++++++++++|+..  ...+.+.++...++++.||+.....      +
T Consensus        82 ~~-~~aDlVi~av~~~~~~~~~v~~~l~-~~~~~~~il~s~tS~~~--~~~la~~~~~~~~~ig~h~~~p~~~------~  151 (283)
T 4e12_A           82 AV-KDADLVIEAVPESLDLKRDIYTKLG-ELAPAKTIFATNSSTLL--PSDLVGYTGRGDKFLALHFANHVWV------N  151 (283)
T ss_dssp             HT-TTCSEEEECCCSCHHHHHHHHHHHH-HHSCTTCEEEECCSSSC--HHHHHHHHSCGGGEEEEEECSSTTT------S
T ss_pred             Hh-ccCCEEEEeccCcHHHHHHHHHHHH-hhCCCCcEEEECCCCCC--HHHHHhhcCCCcceEEEccCCCccc------C
Confidence            76 7999999999998  6778888884 67889999998877754  3555555555568999999874432      2


Q ss_pred             CcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHH
Q 044593          162 LPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAA  208 (335)
Q Consensus       162 ~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A  208 (335)
                      ..+.++    +.+.++.+.++.+.++++.+|..++.++.+.|+.++.
T Consensus       152 ~lvevv----~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~n  194 (283)
T 4e12_A          152 NTAEVM----GTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVLN  194 (283)
T ss_dssp             CEEEEE----ECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHH
T ss_pred             ceEEEE----eCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCEEeh
Confidence            222222    3344556788999999999999999998888876544

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.75  E-value=4.7e-17  Score=152.26  Aligned_cols=159  Identities=12%  Similarity=0.088  Sum_probs=123.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK-  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~-  106 (335)
                      ..+|||+|||+|.||..+|..|.+.|++|++|||+++..+.+.+.|+....++.+++ +++|+||+|+|... +.+++. 
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~-~~aDvVi~~vp~~~~~~~v~~~   85 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAAL-SASPATIFVLLDNHATHEVLGM   85 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHH-HHSSEEEECCSSHHHHHHHHTS
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHH-hcCCEEEEEeCCHHHHHHHhcc
Confidence            356899999999999999999999999999999999877767777888888888887 78999999999875 788886 


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHH
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKF  184 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v  184 (335)
                       .+.  .++++++|+|+++++....+.+.+.+. .+..|+.+ |++|.....  -.+...++.    +++   ++.++.+
T Consensus        86 ~~l~--~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda-pv~g~~~~~--~~~~~~i~~----gg~---~~~~~~~  153 (306)
T 3l6d_A           86 PGVA--RALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG-MIVAYPRNV--GHRESHSIH----TGD---REAFEQH  153 (306)
T ss_dssp             TTHH--HHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE-EEESCGGGT--TCTTCEEEE----EEC---HHHHHHH
T ss_pred             cchh--hccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec-ccccCcccc--cCCceEEEE----cCC---HHHHHHH
Confidence             553  367899999999998877766655442 45778875 888754211  022223332    333   4678899


Q ss_pred             HHHHHhcCCEEEEe--Ch
Q 044593          185 LDVFAKEGCRMVEM--SC  200 (335)
Q Consensus       185 ~~l~~~~G~~v~~~--~~  200 (335)
                      +++|+.+|.+++++  ++
T Consensus       154 ~~ll~~lg~~~~~~~~g~  171 (306)
T 3l6d_A          154 RALLEGLAGHTVFLPWDE  171 (306)
T ss_dssp             HHHHHTTCSEEEECCHHH
T ss_pred             HHHHHHhcCCEEEecCCC
Confidence            99999998899999  64

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.73  E-value=4.2e-17  Score=150.95  Aligned_cols=174  Identities=18%  Similarity=0.205  Sum_probs=130.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh--
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK--  106 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~--  106 (335)
                      ++|||+|||+|.||..++..|.+.|++|++|| +++..+...+.|+....++.+++ .++|+||+|+|... +..++.  
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~-~~~D~vi~~vp~~~~~~~v~~~~   79 (295)
T 1yb4_A            2 NAMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVT-EFADIIFIMVPDTPQVEDVLFGE   79 (295)
T ss_dssp             --CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHH-HTCSEEEECCSSHHHHHHHHHST
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHH-hcCCEEEEECCCHHHHHHHHhCc
Confidence            35799999999999999999999999999999 88776666666887777888877 79999999998876 678887  


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCC-CCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHH
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ-DFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKF  184 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~-~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v  184 (335)
                       ++. +.++++++|+|+++......+.+.+.++. +.+|+. .|+.+.....  ..|...++.    +.+   .+.++.+
T Consensus        80 ~~l~-~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~-~p~~~~~~~a--~~g~~~~~~----~~~---~~~~~~~  148 (295)
T 1yb4_A           80 HGCA-KTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLD-APVSGGEIGA--REGTLSIMV----GGE---QKVFDRV  148 (295)
T ss_dssp             TSST-TSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEE-CCEESHHHHH--HHTCEEEEE----ESC---HHHHHHH
T ss_pred             hhHh-hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE-ccCCCCHHHH--HcCCeEEEE----CCC---HHHHHHH
Confidence             674 56889999999988764444555555432 456664 4777643211  123322332    332   4567889


Q ss_pred             HHHHHhcCCEEEEeChHHHHHHHHHhhhhHHH
Q 044593          185 LDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHT  216 (335)
Q Consensus       185 ~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~  216 (335)
                      +++|+.+|.+++++++..++.+++++++..+.
T Consensus       149 ~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~  180 (295)
T 1yb4_A          149 KPLFDILGKNITLVGGNGDGQTCKVANQIIVA  180 (295)
T ss_dssp             HHHHHHHEEEEEEEESTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHH
Confidence            99999999999999888899888888776553

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.73  E-value=3e-17  Score=152.35  Aligned_cols=173  Identities=18%  Similarity=0.223  Sum_probs=130.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCc-hhHHHHH---h
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSI-LSTQSVL---K  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~-~~~~~vl---~  106 (335)
                      .|||+|||+|.||..++..|.+.|++|++|||+++..+...+.|+....++.+++ .++|+||+|+|. ..+..++   +
T Consensus         5 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~D~vi~~v~~~~~~~~~~~~~~   83 (299)
T 1vpd_A            5 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIA-EQCDVIITMLPNSPHVKEVALGEN   83 (299)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHH-HHCSEEEECCSSHHHHHHHHHSTT
T ss_pred             cceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHH-hCCCEEEEECCCHHHHHHHHhCcc
Confidence            4799999999999999999999999999999998877667777887777888877 789999999994 4577787   5


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                      ++. +.++++++|+|+++......+.+.+.++ .+..|+.. |++|.....  ..+...++.    +++   .+.++.++
T Consensus        84 ~l~-~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-pv~~~~~~~--~~~~~~~~~----~~~---~~~~~~~~  152 (299)
T 1vpd_A           84 GII-EGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDA-PVSGGEPKA--IDGTLSVMV----GGD---KAIFDKYY  152 (299)
T ss_dssp             CHH-HHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC-CEESHHHHH--HHTCEEEEE----ESC---HHHHHHHH
T ss_pred             hHh-hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEe-cCCCCHhHH--hcCCEEEEe----CCC---HHHHHHHH
Confidence            664 5678999999998876544556655553 35677765 887754321  122222332    332   45678899


Q ss_pred             HHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          186 DVFAKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       186 ~l~~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      ++|+.+|.+++++++..+..+++++++.-.
T Consensus       153 ~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~  182 (299)
T 1vpd_A          153 DLMKAMAGSVVHTGDIGAGNVTKLANQVIV  182 (299)
T ss_dssp             HHHHTTEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeEEeCCcCHHHHHHHHHHHHH
Confidence            999999999999988888888877665543

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.73  E-value=2e-17  Score=163.51  Aligned_cols=173  Identities=11%  Similarity=0.076  Sum_probs=130.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCC---C--ceecChhhHhhc---CCCEEEEecCch-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN---A--PFFADLNDLCEL---HPDVVLLSTSIL-   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g---~--~~~~~~~~~~~~---~aDvVIlavp~~-   99 (335)
                      +.+|+|+|||+|.||..+|..|.++|++|++|||+++..+.+.+.+   .  ..+.++.+++ +   ++|+||+|||.. 
T Consensus         2 ~~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v-~~l~~aDvVil~Vp~~~   80 (484)
T 4gwg_A            2 NAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMV-SKLKKPRRIILLVKAGQ   80 (484)
T ss_dssp             -CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHH-HTBCSSCEEEECSCSSH
T ss_pred             CCCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHH-hhccCCCEEEEecCChH
Confidence            3568999999999999999999999999999999998776665543   2  2356788876 4   599999999996 


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHH
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERI  178 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~  178 (335)
                      .+.++++++. +.++++++|+|+++++......+.+.+ ..+.+|+.+ |++|.+.+.  ..|. .++.    +++   +
T Consensus        81 ~v~~vl~~l~-~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~-pVsGg~~gA--~~G~-~im~----GG~---~  148 (484)
T 4gwg_A           81 AVDDFIEKLV-PLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGS-GVSGGEEGA--RYGP-SLMP----GGN---K  148 (484)
T ss_dssp             HHHHHHHHHG-GGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE-EEESHHHHH--HHCC-EEEE----EEC---G
T ss_pred             HHHHHHHHHH-HhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccC-CccCCHHHH--hcCC-eeec----CCC---H
Confidence            6888999885 689999999999998764434333333 346789885 999877532  2454 3332    333   3


Q ss_pred             HHHHHHHHHHHhcCCEE-------EEeChHHHHHHHHHhhhhH
Q 044593          179 KRVDKFLDVFAKEGCRM-------VEMSCFDHDKYAAGSQFVT  214 (335)
Q Consensus       179 ~~~~~v~~l~~~~G~~v-------~~~~~~eHD~~~A~~s~lp  214 (335)
                      +.++.++++|+.+|.++       +++.+......+.++++.-
T Consensus       149 ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i  191 (484)
T 4gwg_A          149 EAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGI  191 (484)
T ss_dssp             GGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHH
Confidence            56788999999999987       7787777777788776553

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.71  E-value=3.8e-16  Score=146.23  Aligned_cols=160  Identities=14%  Similarity=0.168  Sum_probs=120.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecC-chhHHHHHhhcc
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTS-ILSTQSVLKSIP  109 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp-~~~~~~vl~~l~  109 (335)
                      .|||+|||+|.||..+|..|.+.|++|++|||+++..+.+.+.|+....++.+++ .++|+||+|+| +..+..++..+.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~DvVi~av~~~~~~~~v~~~~~  108 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVV-STCDITFACVSDPKAAKDLVLGPS  108 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHH-HHCSEEEECCSSHHHHHHHHHSTT
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHH-hcCCEEEEeCCCHHHHHHHHcCch
Confidence            4899999999999999999999999999999998877666777887777777777 78999999999 667888887642


Q ss_pred             --ccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593          110 --FQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD  186 (335)
Q Consensus       110 --~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~  186 (335)
                        .+.++++++|+|++++.....+.+.+.++ .+..|+++ |++|.....  -.+...++.    +++   .+.++.+++
T Consensus       109 ~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~-p~~g~~~~~--~~g~~~~~~----~g~---~~~~~~v~~  178 (316)
T 2uyy_A          109 GVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEA-PVSGNQQLS--NDGMLVILA----AGD---RGLYEDCSS  178 (316)
T ss_dssp             CGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEESCHHHH--HHTCEEEEE----EEC---HHHHHHTHH
T ss_pred             hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEc-CccCChhHH--hhCCEEEEe----CCC---HHHHHHHHH
Confidence              14578899999999887655566655553 35678876 787754321  133322332    232   356788899


Q ss_pred             HHHhcCCEEEEeChH
Q 044593          187 VFAKEGCRMVEMSCF  201 (335)
Q Consensus       187 l~~~~G~~v~~~~~~  201 (335)
                      +|+.+|.+++++++.
T Consensus       179 ll~~~g~~~~~~~~~  193 (316)
T 2uyy_A          179 CFQAMGKTSFFLGEV  193 (316)
T ss_dssp             HHHHHEEEEEECSST
T ss_pred             HHHHhcCCEEEeCCC
Confidence            999999988888653

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.70  E-value=6e-17  Score=160.47  Aligned_cols=174  Identities=14%  Similarity=0.138  Sum_probs=129.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC----CCceecChhhHhhcC---CCEEEEecCch-
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL----NAPFFADLNDLCELH---PDVVLLSTSIL-   99 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~----g~~~~~~~~~~~~~~---aDvVIlavp~~-   99 (335)
                      .|..++|+|||+|.||+.+|..|.++|++|++|||+++..+...+.    |+..+.++.+++ .+   +|+||+|||.. 
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v-~~l~~aDvVil~Vp~~~   90 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFV-ESLETPRRILLMVKAGA   90 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHH-HTBCSSCEEEECSCSSS
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHH-hCCCCCCEEEEECCCHH
Confidence            3567899999999999999999999999999999998776544443    677777888876 55   99999999994 


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHH
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERI  178 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~  178 (335)
                      .+.++++++. +.++++++|+|++++.......+.+.++ .+..|+++ |+.|.+...  ..|. .++.    +++   +
T Consensus        91 ~v~~vl~~l~-~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~-pv~gg~~~a--~~g~-~i~~----gg~---~  158 (480)
T 2zyd_A           91 GTDAAIDSLK-PYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGT-GVSGGEEGA--LKGP-SIMP----GGQ---K  158 (480)
T ss_dssp             HHHHHHHHHG-GGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE-EEESHHHHH--HHCC-EEEE----ESC---H
T ss_pred             HHHHHHHHHH-hhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCC-ccccCHhHH--hcCC-eEEe----cCC---H
Confidence            7899999885 6788999999999887554444544443 35678864 888766421  1343 3332    333   4


Q ss_pred             HHHHHHHHHHHhcCCE-------EEEeChHHHHHHHHHhhhhH
Q 044593          179 KRVDKFLDVFAKEGCR-------MVEMSCFDHDKYAAGSQFVT  214 (335)
Q Consensus       179 ~~~~~v~~l~~~~G~~-------v~~~~~~eHD~~~A~~s~lp  214 (335)
                      +.++.++++|+.+|.+       +.++++......+.++.+..
T Consensus       159 ~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~  201 (480)
T 2zyd_A          159 EAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGI  201 (480)
T ss_dssp             HHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHH
Confidence            6788999999999998       67787776666776655443

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.70  E-value=9.5e-16  Score=142.52  Aligned_cols=176  Identities=15%  Similarity=0.134  Sum_probs=123.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee------------cChhhHhh--cCCCEEEEe
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF------------ADLNDLCE--LHPDVVLLS   95 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~------------~~~~~~~~--~~aDvVIla   95 (335)
                      ++|||+|||+|.||+.+|..|.++|++|++|||+++..+...+.|+...            .+..++..  .++|+||+|
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~   81 (316)
T 2ew2_A            2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIAL   81 (316)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEEC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEE
Confidence            4589999999999999999999999999999999877665555554321            13333330  289999999


Q ss_pred             cCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc-c----cccCCCcceecccc
Q 044593           96 TSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA-K----SSWENLPFMYDKVR  170 (335)
Q Consensus        96 vp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~-~----~~~~g~~~i~~~~~  170 (335)
                      +|...+.++++++. +.++++++|+++++.-. ..+.+.+.++.. +++++|++.+.... +    ....|.+.+..   
T Consensus        82 v~~~~~~~v~~~l~-~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~-~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~---  155 (316)
T 2ew2_A           82 TKAQQLDAMFKAIQ-PMITEKTYVLCLLNGLG-HEDVLEKYVPKE-NILVGITMWTAGLEGPGRVKLLGDGEIELEN---  155 (316)
T ss_dssp             SCHHHHHHHHHHHG-GGCCTTCEEEECCSSSC-THHHHTTTSCGG-GEEEEEECCCCEEEETTEEEECSCCCEEEEE---
T ss_pred             eccccHHHHHHHHH-HhcCCCCEEEEecCCCC-cHHHHHHHcCCc-cEEEEEeeeeeEEcCCCEEEEecCCcEEEee---
Confidence            99999999999985 67889999999864322 346677666643 67777776655432 1    11234333321   


Q ss_pred             cCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhh
Q 044593          171 IGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       171 ~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~l  213 (335)
                        ....+.+..+.++++|+..|.+++..+......+..++.+.
T Consensus       156 --~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~  196 (316)
T 2ew2_A          156 --IDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNG  196 (316)
T ss_dssp             --SSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHT
T ss_pred             --cCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhh
Confidence              12334567889999999999988888766666677665543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.69  E-value=1.9e-16  Score=147.21  Aligned_cols=152  Identities=18%  Similarity=0.161  Sum_probs=113.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-------CCceecChhhHhhcCCCEEEEecCchh--
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-------NAPFFADLNDLCELHPDVVLLSTSILS--  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-------g~~~~~~~~~~~~~~aDvVIlavp~~~--  100 (335)
                      ..+||+|||+|.||++||..|+ +|++|++||++++..+.+.+.       ++...+++.+ + ++||+||.|+|.+.  
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~-~~aDlVieavpe~~~v   87 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-V-KDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-G-GGCSEEEECCCSCHHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-H-cCCCEEEEcCcCCHHH
Confidence            4689999999999999999999 999999999999877766665       5666777776 5 78999999999987  


Q ss_pred             HHHHHhhccccccCCccEEE-EcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHH
Q 044593          101 TQSVLKSIPFQRLKRSTLFV-DVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIK  179 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVv-d~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~  179 (335)
                      ...++.++. . + ++++++ |++|++.   ..+.+.+....++++.||+..+..      +..+.+    ++++.++++
T Consensus        88 k~~l~~~l~-~-~-~~~IlasntSti~~---~~~a~~~~~~~r~~G~Hf~~Pv~~------~~lvei----v~g~~t~~~  151 (293)
T 1zej_A           88 KVEVLREVE-R-L-TNAPLCSNTSVISV---DDIAERLDSPSRFLGVHWMNPPHV------MPLVEI----VISRFTDSK  151 (293)
T ss_dssp             HHHHHHHHH-T-T-CCSCEEECCSSSCH---HHHHTTSSCGGGEEEEEECSSTTT------CCEEEE----EECTTCCHH
T ss_pred             HHHHHHHHh-c-C-CCCEEEEECCCcCH---HHHHHHhhcccceEeEEecCcccc------CCEEEE----ECCCCCCHH
Confidence            356667774 3 4 898886 4555533   445554444457999999984332      222222    234445677


Q ss_pred             HHHHHHHHHHhcCCEEEEeCh
Q 044593          180 RVDKFLDVFAKEGCRMVEMSC  200 (335)
Q Consensus       180 ~~~~v~~l~~~~G~~v~~~~~  200 (335)
                      .++.+.++++.+|.+++++..
T Consensus       152 ~~~~~~~l~~~lGk~~v~v~d  172 (293)
T 1zej_A          152 TVAFVEGFLRELGKEVVVCKG  172 (293)
T ss_dssp             HHHHHHHHHHHTTCEEEEEES
T ss_pred             HHHHHHHHHHHcCCeEEEecc
Confidence            899999999999999999874

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.69  E-value=8.7e-17  Score=148.24  Aligned_cols=168  Identities=17%  Similarity=0.136  Sum_probs=124.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhhcc
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIP  109 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~  109 (335)
                      +|||+|||+|.||..++..|.+ |++|++|||+++..+.+.+.|+...+ +.+++ .++|+||+|+|... +..+++++.
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~-~~~D~vi~~v~~~~~~~~v~~~l~   77 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERV-AEARVIFTCLPTTREVYEVAEALY   77 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGG-GGCSEEEECCSSHHHHHHHHHHHT
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHH-hCCCEEEEeCCChHHHHHHHHHHH
Confidence            3689999999999999999999 99999999998876655555766555 66666 78999999999875 788888874


Q ss_pred             ccccCCccEEEEcCCCCchHHHHHHhhCCC-CCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHH
Q 044593          110 FQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ-DFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVF  188 (335)
Q Consensus       110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~-~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~  188 (335)
                       +.++++++|+|+++......+.+.+.++. +..|+.. |++|+....  ..|...++.    +.+   .+.++.++++|
T Consensus        78 -~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~--~~g~~~~~~----~~~---~~~~~~~~~ll  146 (289)
T 2cvz_A           78 -PYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGA--EAGTLTVML----GGP---EEAVERVRPFL  146 (289)
T ss_dssp             -TTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHH--HHTCEEEEE----ESC---HHHHHHHGGGC
T ss_pred             -hhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHH--hhCCeEEEE----CCC---HHHHHHHHHHH
Confidence             56889999999988766555666665543 4577775 887655321  134333332    232   45678889999


Q ss_pred             HhcCCEEEEeChHHHHHHHHHhhhh
Q 044593          189 AKEGCRMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       189 ~~~G~~v~~~~~~eHD~~~A~~s~l  213 (335)
                       .+|.+++++++..+..++.++...
T Consensus       147 -~~g~~~~~~~~~~~~~~~k~~~n~  170 (289)
T 2cvz_A          147 -AYAKKVVHVGPVGAGHAVKAINNA  170 (289)
T ss_dssp             -TTEEEEEEEESTTHHHHHHHHHHH
T ss_pred             -hhcCCeEEcCCCcHHHHHHHHHHH
Confidence             999888888777777776665443

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.69  E-value=2e-16  Score=140.11  Aligned_cols=153  Identities=15%  Similarity=0.247  Sum_probs=115.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      ..|||+|||+|.||+++|..|.+.|++|++|||+++                  .+ .++|+||+|+|...+.++++++.
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~-~~aD~vi~av~~~~~~~v~~~l~   78 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------AT-TLGEIVIMAVPYPALAALAKQYA   78 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CS-SCCSEEEECSCHHHHHHHHHHTH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------Hh-ccCCEEEEcCCcHHHHHHHHHHH
Confidence            478999999999999999999999999999999875                  23 68999999999888999999985


Q ss_pred             ccccCCccEEEEcCC-------------CCchHHHHHHhhCCCCCceEe-ccccCCCCCcccccCC-CcceecccccCCC
Q 044593          110 FQRLKRSTLFVDVLS-------------VKEFPRNLFLKYLPQDFDILC-THPMFGPESAKSSWEN-LPFMYDKVRIGND  174 (335)
Q Consensus       110 ~~~l~~~~iVvd~~S-------------vK~~~~~~l~~~l~~~~~~v~-~HPmaG~~~~~~~~~g-~~~i~~~~~~~~~  174 (335)
                       +.++ +++|+|+++             ++..+.+.+++.++ +.+++. +||+++|..+.....+ .+..+.   ++++
T Consensus        79 -~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~---~~g~  152 (209)
T 2raf_A           79 -TQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAATLQSGQVNGKEPTTVL---VAGN  152 (209)
T ss_dssp             -HHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHHHHHHSEETTTEECEEE---EEES
T ss_pred             -HhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHhhccccccCCCCCceeE---EcCC
Confidence             5677 899999977             33333677888886 457887 8998888764322233 222211   1222


Q ss_pred             hhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593          175 EERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG  209 (335)
Q Consensus       175 ~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~  209 (335)
                        +.+..+.++++|+.+|++++.+++-+...++..
T Consensus       153 --~~~~~~~v~~ll~~~G~~~~~~~~i~~a~~~K~  185 (209)
T 2raf_A          153 --DDSAKQRFTRALADSPLEVKDAGKLKRARELEA  185 (209)
T ss_dssp             --CHHHHHHHHHHTTTSSCEEEEEESGGGHHHHHH
T ss_pred             --CHHHHHHHHHHHHHcCCceEeCCCHhHHHHhcc
Confidence              345778899999999999999987655555554

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.68  E-value=1.3e-16  Score=158.58  Aligned_cols=171  Identities=14%  Similarity=0.094  Sum_probs=129.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----CCCceecChhhHhhcC---CCEEEEecCch-h
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----LNAPFFADLNDLCELH---PDVVLLSTSIL-S  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----~g~~~~~~~~~~~~~~---aDvVIlavp~~-~  100 (335)
                      ...+|+|||+|.||+.+|..|.++|++|++|||+++..+...+     .|+..+.++.+++ ..   +|+||+|||.. .
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v-~~l~~aDvVil~Vp~~~~   87 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFI-SKLKRPRKVMLLVKAGAP   87 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHH-HTSCSSCEEEECCCSSHH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHH-hcCCCCCEEEEEcCChHH
Confidence            3568999999999999999999999999999999987766655     5777777888876 55   99999999995 7


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHH
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIK  179 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~  179 (335)
                      +.++++++. +.++++++|+|++++.......+.+.+. .+..|++. |++|.+.+.  ..|. .++.    +++   ++
T Consensus        88 v~~vl~~l~-~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~-pVsgg~~~a--~~G~-~im~----gg~---~e  155 (497)
T 2p4q_A           88 VDALINQIV-PLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGS-GVSGGEEGA--RYGP-SLMP----GGS---EE  155 (497)
T ss_dssp             HHHHHHHHG-GGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE-EEESHHHHH--HHCC-EEEE----EEC---GG
T ss_pred             HHHHHHHHH-HhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCC-CcccChhHh--hcCC-eEEe----cCC---HH
Confidence            899999885 6789999999999887654444544443 35678864 888766431  1344 2332    233   34


Q ss_pred             HHHHHHHHHHhcCCE------EEEeChHHHHHHHHHhhhh
Q 044593          180 RVDKFLDVFAKEGCR------MVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       180 ~~~~v~~l~~~~G~~------v~~~~~~eHD~~~A~~s~l  213 (335)
                      .++.++++|+.+|.+      ++++++......+.++.+.
T Consensus       156 ~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~  195 (497)
T 2p4q_A          156 AWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNG  195 (497)
T ss_dssp             GHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHH
Confidence            678889999999998      6777776666666665544

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.68  E-value=2.5e-16  Score=146.25  Aligned_cols=173  Identities=16%  Similarity=0.158  Sum_probs=128.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh--
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK--  106 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~--  106 (335)
                      +.|||+|||+|.||..++..|.+.|++|++|||+++..+...+.|+....++.+++ .++|+||+|+|... +..++.  
T Consensus         3 ~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~D~vi~~vp~~~~~~~v~~~~   81 (301)
T 3cky_A            3 KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVA-AASDIIFTSLPNAGIVETVMNGP   81 (301)
T ss_dssp             -CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHH-HHCSEEEECCSSHHHHHHHHHST
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHH-hCCCEEEEECCCHHHHHHHHcCc
Confidence            35799999999999999999999999999999998777666666887777888877 78999999998654 777774  


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHH
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKF  184 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v  184 (335)
                       ++. +.++++++|+++++......+.+.+.++ .+.+|+. +|+.+.....  ..|...++.    +.+   .+.++.+
T Consensus        82 ~~l~-~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~-~p~~~~~~~a--~~g~~~~~~----~g~---~~~~~~v  150 (301)
T 3cky_A           82 GGVL-SACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD-APVSGGTKGA--EAGTLTIMV----GAS---EAVFEKI  150 (301)
T ss_dssp             TCHH-HHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEE-CCEESHHHHH--HHTCEEEEE----ESC---HHHHHHH
T ss_pred             chHh-hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE-ccCCCCHHHH--HcCCeEEEE----CCC---HHHHHHH
Confidence             663 5678999999998876444455555443 3567775 5887755221  124323332    232   4567889


Q ss_pred             HHHHHhcCCEEEEeChHHHHHHHHHhhhhH
Q 044593          185 LDVFAKEGCRMVEMSCFDHDKYAAGSQFVT  214 (335)
Q Consensus       185 ~~l~~~~G~~v~~~~~~eHD~~~A~~s~lp  214 (335)
                      +++|+.+|.++++++...+..++.++.+..
T Consensus       151 ~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~  180 (301)
T 3cky_A          151 QPVLSVIGKDIYHVGDTGAGDAVKIVNNLL  180 (301)
T ss_dssp             HHHHHHHEEEEEEEESTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence            999999999988888888888877765543

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.68  E-value=1.4e-16  Score=152.17  Aligned_cols=219  Identities=15%  Similarity=0.142  Sum_probs=139.1

Q ss_pred             hcccCC--CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCC--------------CceecChhhHhhc
Q 044593           24 TQYVKS--TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN--------------APFFADLNDLCEL   87 (335)
Q Consensus        24 ~~~~~~--~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g--------------~~~~~~~~~~~~~   87 (335)
                      .|.++|  ..|||+|||+|.||+++|..|.++|++|++|+|+++..+...+.+              +..++++.+++ .
T Consensus        20 ~~~~~m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~-~   98 (356)
T 3k96_A           20 FQSNAMEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASL-E   98 (356)
T ss_dssp             -------CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHH-T
T ss_pred             hhhhcccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHH-h
Confidence            444443  368999999999999999999999999999999987665454433              23456777777 7


Q ss_pred             CCCEEEEecCchhHHHHHhhccccccCCccEEEEcCC-CC---chHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593           88 HPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLS-VK---EFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP  163 (335)
Q Consensus        88 ~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~S-vK---~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~  163 (335)
                      ++|+||+|||...+.++++++. +.++++++|++++. +.   ..+.+.+.+.++.. .+.   -+.||....+...+.|
T Consensus        99 ~aDvVilaVp~~~~~~vl~~i~-~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~-~~~---vlsgP~~a~ev~~g~p  173 (356)
T 3k96_A           99 GVTDILIVVPSFAFHEVITRMK-PLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQV-PMA---VISGPSLATEVAANLP  173 (356)
T ss_dssp             TCCEEEECCCHHHHHHHHHHHG-GGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSC-CEE---EEESSCCHHHHHTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-HhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCC-CEE---EEECccHHHHHHcCCC
Confidence            9999999999999999999995 68899999998753 21   12234566656532 211   2456665544445666


Q ss_pred             ceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCCC---CCCCCcchhhHH
Q 044593          164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVES---SPINTKGYETLL  240 (335)
Q Consensus       164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~~---~~~~~~gf~~~~  240 (335)
                      ..++   +++.  +.+..+.++++|+..|++++..+.-..-.+.+++-++-.+.+-.....+...   ..+.+.++..+.
T Consensus       174 t~~v---ia~~--~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~  248 (356)
T 3k96_A          174 TAVS---LASN--NSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMG  248 (356)
T ss_dssp             EEEE---EEES--CHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             eEEE---EecC--CHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Confidence            5443   2222  3467789999999999998887755544444443333222111111111111   012345677777


Q ss_pred             HHHHHhhCCChHhH
Q 044593          241 DLVDNTKGDSFDLY  254 (335)
Q Consensus       241 rl~~~ia~~~~~lw  254 (335)
                      +++.. .+.+|+.+
T Consensus       249 ~l~~a-~G~~~~t~  261 (356)
T 3k96_A          249 RLVSV-FGGKQETL  261 (356)
T ss_dssp             HHHHH-TTCCHHHH
T ss_pred             HHHHH-hCCChHhh
Confidence            77765 45566544

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.67  E-value=1.2e-15  Score=149.59  Aligned_cols=159  Identities=13%  Similarity=0.079  Sum_probs=118.4

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH--------HHHHhCCC-------------ceecChhhHh
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP--------AVRQQLNA-------------PFFADLNDLC   85 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~--------~~a~~~g~-------------~~~~~~~~~~   85 (335)
                      ..+..+||+|||+|.||++||..|+++|++|++||++++..        +.+.+.|.             ..+++++ .+
T Consensus        50 ~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al  128 (460)
T 3k6j_A           50 EAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KL  128 (460)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GC
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HH
Confidence            44567899999999999999999999999999999998621        12333443             2456665 45


Q ss_pred             hcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593           86 ELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP  163 (335)
Q Consensus        86 ~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~  163 (335)
                       ++||+||.|+|.+.  ...++.++. +.++++++|++++|+-  .+..+.+.++...+|++.||+.++...+      .
T Consensus       129 -~~aDlVIeAVpe~~~vk~~v~~~l~-~~~~~~aIlasnTSsl--~i~~ia~~~~~p~r~iG~HffnPv~~m~------L  198 (460)
T 3k6j_A          129 -SNCDLIVESVIEDMKLKKELFANLE-NICKSTCIFGTNTSSL--DLNEISSVLRDPSNLVGIHFFNPANVIR------L  198 (460)
T ss_dssp             -TTCSEEEECCCSCHHHHHHHHHHHH-TTSCTTCEEEECCSSS--CHHHHHTTSSSGGGEEEEECCSSTTTCC------E
T ss_pred             -ccCCEEEEcCCCCHHHHHHHHHHHH-hhCCCCCEEEecCCCh--hHHHHHHhccCCcceEEEEecchhhhCC------E
Confidence             79999999999763  467888885 6789999998877663  3466766665555799999999554321      1


Q ss_pred             ceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeCh
Q 044593          164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSC  200 (335)
Q Consensus       164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~  200 (335)
                      +-+    ++++.++++.++.+.++++.+|..++++..
T Consensus       199 vEI----v~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d  231 (460)
T 3k6j_A          199 VEI----IYGSHTSSQAIATAFQACESIKKLPVLVGN  231 (460)
T ss_dssp             EEE----ECCSSCCHHHHHHHHHHHHHTTCEEEEESS
T ss_pred             EEE----EeCCCCCHHHHHHHHHHHHHhCCEEEEEec
Confidence            111    234445678899999999999999999863

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.67  E-value=8.6e-16  Score=136.90  Aligned_cols=168  Identities=15%  Similarity=0.198  Sum_probs=121.1

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEE-EcCCCCcHHH-HHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLV-HSRSDHSPAV-RQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~-~dr~~~~~~~-a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      .|++|||+|||+|.||.++|..|.+.|++|++ +||+++..+. +.+.|+....+..+.+ .++|+||+|+|+..+.+++
T Consensus        20 ~m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~-~~aDvVilavp~~~~~~v~   98 (220)
T 4huj_A           20 FQSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDA-LQADVVILAVPYDSIADIV   98 (220)
T ss_dssp             GGGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHH-TTSSEEEEESCGGGHHHHH
T ss_pred             hhcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHH-hcCCEEEEeCChHHHHHHH
Confidence            35678999999999999999999999999998 9999876643 4556776655555556 7899999999999999999


Q ss_pred             hhccccccCCccEEEEcCCCCc------------hHHHHHHhhCCCCCceEeccccCCCCCcc--cccCCCcceeccccc
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKE------------FPRNLFLKYLPQDFDILCTHPMFGPESAK--SSWENLPFMYDKVRI  171 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~------------~~~~~l~~~l~~~~~~v~~HPmaG~~~~~--~~~~g~~~i~~~~~~  171 (335)
                      .++. + + ++++|+|+++.-.            ...+.+++.++ +.+++.++|........  ..+.+.+..+.  +.
T Consensus        99 ~~l~-~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~~v~~~g~~~~~~~~~v~--~~  172 (220)
T 4huj_A           99 TQVS-D-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPAAVLAADPDKGTGSRVLF--LS  172 (220)
T ss_dssp             TTCS-C-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCHHHHTSCSBCSSCEEEEE--EE
T ss_pred             HHhh-c-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCHHHhhhCcccCCCCeeEE--Ee
Confidence            9995 4 4 5889999875431            15678888887 45677777654433211  01122222111  01


Q ss_pred             CCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHH
Q 044593          172 GNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDK  205 (335)
Q Consensus       172 ~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~  205 (335)
                      +.   +++..+.++++++.+|.+++.+.+-...+
T Consensus       173 g~---~~~~~~~v~~l~~~~G~~~~~~G~l~~a~  203 (220)
T 4huj_A          173 GN---HSDANRQVAELISSLGFAPVDLGTLAASG  203 (220)
T ss_dssp             ES---CHHHHHHHHHHHHHTTCEEEECCSHHHHH
T ss_pred             CC---CHHHHHHHHHHHHHhCCCeEeeCChhhcc
Confidence            22   25677899999999999999998765543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.67  E-value=9.6e-16  Score=142.84  Aligned_cols=156  Identities=15%  Similarity=0.083  Sum_probs=114.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-----------hCC------------------CceecC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-----------QLN------------------APFFAD   80 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-----------~~g------------------~~~~~~   80 (335)
                      .++||+|||+|.||..+|..|.++|++|++||++++..+.+.           +.|                  +..+++
T Consensus        14 ~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~   93 (302)
T 1f0y_A           14 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD   93 (302)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecC
Confidence            457899999999999999999999999999999987654321           233                  234567


Q ss_pred             hhhHhhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccc
Q 044593           81 LNDLCELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSS  158 (335)
Q Consensus        81 ~~~~~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~  158 (335)
                      +.+.+ .+||+||+|+|.+.  ...++.++. +.++++++|++++|+-  ....+.+.++...++++.||+......   
T Consensus        94 ~~~~~-~~aD~Vi~avp~~~~~~~~v~~~l~-~~~~~~~iv~s~ts~i--~~~~l~~~~~~~~~~~g~h~~~P~~~~---  166 (302)
T 1f0y_A           94 AASVV-HSTDLVVEAIVENLKVKNELFKRLD-KFAAEHTIFASNTSSL--QITSIANATTRQDRFAGLHFFNPVPVM---  166 (302)
T ss_dssp             HHHHT-TSCSEEEECCCSCHHHHHHHHHHHT-TTSCTTCEEEECCSSS--CHHHHHTTSSCGGGEEEEEECSSTTTC---
T ss_pred             HHHhh-cCCCEEEEcCcCcHHHHHHHHHHHH-hhCCCCeEEEECCCCC--CHHHHHHhcCCcccEEEEecCCCcccC---
Confidence            77666 79999999999875  467788885 5688899998766553  335666656544579999998744321   


Q ss_pred             cCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          159 WENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       159 ~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                         ..+.+    ++++..+++.++.+.++++.+|..++++.
T Consensus       167 ---~~~~i----~~g~~~~~e~~~~~~~l~~~~G~~~v~~~  200 (302)
T 1f0y_A          167 ---KLVEV----IKTPMTSQKTFESLVDFSKALGKHPVSCK  200 (302)
T ss_dssp             ---CEEEE----ECCTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ---ceEEE----eCCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence               11122    23434456788999999999998888875

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.67  E-value=2.5e-16  Score=145.05  Aligned_cols=153  Identities=16%  Similarity=0.165  Sum_probs=101.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeE-EEEcCCCCcHHHH-HhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTL-LVHSRSDHSPAVR-QQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V-~~~dr~~~~~~~a-~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      +|||+|||+|.||++++..|.+. ++| .+|||+++..+.+ ...|. .+.++.+++ .++|+||+|||+....+++.++
T Consensus         2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~-~~~DvVilav~~~~~~~v~~~l   78 (276)
T 2i76_A            2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHP-ELNGVVFVIVPDRYIKTVANHL   78 (276)
T ss_dssp             --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCC-C---CEEECSCTTTHHHHHTTT
T ss_pred             CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHH-hcCCEEEEeCChHHHHHHHHHh
Confidence            47999999999999999999988 999 5999998765444 45676 556666666 7899999999999999999887


Q ss_pred             cccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCC---CCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          109 PFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGP---ESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~---~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                      .    +++++|+|+++....  +.+++     ..+.+.||++..   ......+.+.++.++     .+.   +..+.++
T Consensus        79 ~----~~~~ivi~~s~~~~~--~~l~~-----~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~-----~~~---~~~~~~~  139 (276)
T 2i76_A           79 N----LGDAVLVHCSGFLSS--EIFKK-----SGRASIHPNFSFSSLEKALEMKDQIVFGLE-----GDE---RGLPIVK  139 (276)
T ss_dssp             C----CSSCCEEECCSSSCG--GGGCS-----SSEEEEEECSCC--CTTGGGCGGGCCEEEC-----CCT---TTHHHHH
T ss_pred             c----cCCCEEEECCCCCcH--HHHHH-----hhccccchhhhcCCCchhHHHhCCCeEEEE-----eCh---HHHHHHH
Confidence            3    578899998744221  22221     145667886632   211111344444442     222   2367888


Q ss_pred             HHHHhcCCEEEEeChHHHHH
Q 044593          186 DVFAKEGCRMVEMSCFDHDK  205 (335)
Q Consensus       186 ~l~~~~G~~v~~~~~~eHD~  205 (335)
                      ++++.+|.+++++++++|+.
T Consensus       140 ~l~~~lG~~~~~v~~~~~~~  159 (276)
T 2i76_A          140 KIAEEISGKYFVIPSEKKKA  159 (276)
T ss_dssp             HHHHHHCSCEEECCGGGHHH
T ss_pred             HHHHHhCCCEEEECHHHHHH
Confidence            99999999999999888774

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.66  E-value=8.5e-16  Score=152.09  Aligned_cols=173  Identities=15%  Similarity=0.137  Sum_probs=128.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC----CCceecChhhHhhcC---CCEEEEecCch-h
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL----NAPFFADLNDLCELH---PDVVLLSTSIL-S  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~----g~~~~~~~~~~~~~~---aDvVIlavp~~-~  100 (335)
                      |+.+||+|||+|.||+.+|..|.++|++|++|||+++..+...+.    |+..+.++.+++ ..   +|+||+|||.. .
T Consensus         3 m~~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v-~~l~~aDvVilavp~~~~   81 (474)
T 2iz1_A            3 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFV-GSLEKPRRIMLMVQAGAA   81 (474)
T ss_dssp             CTTBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHH-HTBCSSCEEEECCCTTHH
T ss_pred             CCCCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHH-hhccCCCEEEEEccCchH
Confidence            335799999999999999999999999999999998766544432    676677888876 55   99999999995 6


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHH
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIK  179 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~  179 (335)
                      +.++++++. +.++++++|+|++++.......+.+.++ .+..|++ .|++|++...  ..|. .++.    ++   +.+
T Consensus        82 v~~vl~~l~-~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~-~pv~gg~~~a--~~g~-~i~~----gg---~~~  149 (474)
T 2iz1_A           82 TDATIKSLL-PLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIG-TGVSGGEKGA--LLGP-SMMP----GG---QKE  149 (474)
T ss_dssp             HHHHHHHHG-GGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEE-EEECSHHHHH--HHCC-CEEE----EE---CHH
T ss_pred             HHHHHHHHH-hhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEEC-CCCCCChhhh--ccCC-eEEe----cC---CHH
Confidence            888998885 6788999999998876554455656665 3567875 5888765421  1343 2332    22   246


Q ss_pred             HHHHHHHHHHhcCCE--------EEEeChHHHHHHHHHhhhhH
Q 044593          180 RVDKFLDVFAKEGCR--------MVEMSCFDHDKYAAGSQFVT  214 (335)
Q Consensus       180 ~~~~v~~l~~~~G~~--------v~~~~~~eHD~~~A~~s~lp  214 (335)
                      .++.++++|+.+|.+        +.++++......+.++.+..
T Consensus       150 ~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~  192 (474)
T 2iz1_A          150 AYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGI  192 (474)
T ss_dssp             HHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHH
Confidence            788899999999988        56777666666666655443

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.65  E-value=8.5e-16  Score=142.29  Aligned_cols=170  Identities=14%  Similarity=0.166  Sum_probs=120.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHhhcc-
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLKSIP-  109 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~~l~-  109 (335)
                      |||+|||+|.||..++..|.+.|++|++|||+++..+.+.+.|+....++.+++ .++|+||+|+|.. .+..++.++. 
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~Dvvi~~vp~~~~~~~v~~~~~~   79 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVA-EKADRIITMLPTSINAIEAYSGANG   79 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHH-HHCSEEEECCSSHHHHHHHHHSTTS
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHH-hcCCEEEEeCCCHHHHHHHHhCchh
Confidence            689999999999999999999999999999999877767777887777888877 7899999999754 6778887642 


Q ss_pred             -ccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHH
Q 044593          110 -FQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDV  187 (335)
Q Consensus       110 -~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l  187 (335)
                       .+.++++++|+|+++++....+.+.+.++ .+..|+ .+|+.+......  .+...++.    +.+   .+.++.++++
T Consensus        80 ~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~-~~p~~~g~~~a~--~~~~~~~~----~~~---~~~~~~v~~l  149 (296)
T 2gf2_A           80 ILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFM-DAPVSGGVGAAR--SGNLTFMV----GGV---EDEFAAAQEL  149 (296)
T ss_dssp             GGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE-ECCEESHHHHHH--HTCEEEEE----ESC---GGGHHHHHHH
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE-EcCCCCChhHHh--cCcEEEEe----CCC---HHHHHHHHHH
Confidence             13568899999988776655554443332 234454 468876542110  23322332    233   3456788999


Q ss_pred             HHhcCCEEEEeChHHHHHHHHHhhh
Q 044593          188 FAKEGCRMVEMSCFDHDKYAAGSQF  212 (335)
Q Consensus       188 ~~~~G~~v~~~~~~eHD~~~A~~s~  212 (335)
                      |+.+|.+++.+........+.+.++
T Consensus       150 ~~~~g~~~~~~~~~g~~~~~kl~~n  174 (296)
T 2gf2_A          150 LGCMGSNVVYCGAVGTGQAAKICNN  174 (296)
T ss_dssp             HTTTEEEEEEEESTTHHHHHHHHHH
T ss_pred             HHHHcCCeEEeCCccHHHHHHHHHH
Confidence            9999998888766554445544443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.65  E-value=9.1e-16  Score=138.97  Aligned_cols=185  Identities=15%  Similarity=0.176  Sum_probs=125.4

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc--------------HH-HHHhCCCceecChhhHhhcCCCE
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS--------------PA-VRQQLNAPFFADLNDLCELHPDV   91 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~--------------~~-~a~~~g~~~~~~~~~~~~~~aDv   91 (335)
                      .....+||+|||+|.||+++|..|.++|++|++|||+++.              .+ .+.+.+.....++.+++ +++|+
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~aDv   93 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVA-AGAEL   93 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHH-HHCSE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHH-hcCCE
Confidence            3456899999999999999999999999999999999865              22 22334555566777777 78999


Q ss_pred             EEEecCchhHHHHHhhc-cccccCCccEEEEcCCC---------------CchHHHHHHhhCCCCCceEeccccCCCCC-
Q 044593           92 VLLSTSILSTQSVLKSI-PFQRLKRSTLFVDVLSV---------------KEFPRNLFLKYLPQDFDILCTHPMFGPES-  154 (335)
Q Consensus        92 VIlavp~~~~~~vl~~l-~~~~l~~~~iVvd~~Sv---------------K~~~~~~l~~~l~~~~~~v~~HPmaG~~~-  154 (335)
                      ||+|+|+....+++.++ . +.+ ++++|+|+++.               .....+.+++.++. .+++.+.|...... 
T Consensus        94 Vilavp~~~~~~~~~~i~~-~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~-~~vv~~~~~~~a~v~  170 (245)
T 3dtt_A           94 VVNATEGASSIAALTAAGA-ENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE-AKVVKTLNTMNASLM  170 (245)
T ss_dssp             EEECSCGGGHHHHHHHHCH-HHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTT-SEEEECSTTSCHHHH
T ss_pred             EEEccCcHHHHHHHHHhhh-hhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCC-CeEEEeecccCHHHh
Confidence            99999999988888887 4 445 88999999831               12455778888864 45555443332111 


Q ss_pred             c-cccc-CCCcceecccccCCChhHHHHHHHHHHHHHhcCCE-EEEeChHHHHHHHHHhhhhHHHHHHHH
Q 044593          155 A-KSSW-ENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCR-MVEMSCFDHDKYAAGSQFVTHTMGRVL  221 (335)
Q Consensus       155 ~-~~~~-~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~-v~~~~~~eHD~~~A~~s~lph~la~aL  221 (335)
                      + .... .+...++    ++++  +.+..+.++++|+.+|++ ++.+.+-.....+..+..+-..++.++
T Consensus       171 ~~~~~a~~g~~~~~----v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~~~~  234 (245)
T 3dtt_A          171 VDPGRAAGGDHSVF----VSGN--DAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLWGAL  234 (245)
T ss_dssp             HCGGGTGGGCCCEE----EECS--CHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHHHHH
T ss_pred             cCccccCCCCeeEE----EECC--CHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHHHHc
Confidence            1 1111 2222222    1222  246788999999999986 678877776777777665555555443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.64  E-value=5.4e-16  Score=153.80  Aligned_cols=170  Identities=11%  Similarity=0.061  Sum_probs=125.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----CCCceecChhhHhh--cCCCEEEEecCch-hHHH
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----LNAPFFADLNDLCE--LHPDVVLLSTSIL-STQS  103 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----~g~~~~~~~~~~~~--~~aDvVIlavp~~-~~~~  103 (335)
                      |||+|||+|.||+.+|..|.++|++|++|||+++..+...+     .|+..+.++++++.  +++|+||+|||.. .+.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            68999999999999999999999999999999987765655     56767778887751  3899999999996 6889


Q ss_pred             HHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHH
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVD  182 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~  182 (335)
                      ++.++. +.++++++|+|++++.......+.+.++ .+..|++ .|++|++...  ..|. .++.    +++   .+.++
T Consensus        83 vl~~l~-~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~-~pv~g~~~~a--~~g~-~i~~----gg~---~e~~~  150 (482)
T 2pgd_A           83 FIEKLV-PLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVG-SGVSGGEDGA--RYGP-SLMP----GGN---KEAWP  150 (482)
T ss_dssp             HHHHHH-HHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHHH--HHCC-EEEE----EEC---TTTHH
T ss_pred             HHHHHH-hhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeC-CCCCCChhhh--ccCC-eEEe----CCC---HHHHH
Confidence            998885 6788999999998776544344444443 3567875 5888776431  1343 2332    222   34678


Q ss_pred             HHHHHHHhcCCEE-------EEeChHHHHHHHHHhhhh
Q 044593          183 KFLDVFAKEGCRM-------VEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       183 ~v~~l~~~~G~~v-------~~~~~~eHD~~~A~~s~l  213 (335)
                      .++++|+.+|.++       .++++......+.++.+.
T Consensus       151 ~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~  188 (482)
T 2pgd_A          151 HIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNG  188 (482)
T ss_dssp             HHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHH
Confidence            8899999999886       566666666666665543

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.63  E-value=1.3e-15  Score=150.92  Aligned_cols=155  Identities=15%  Similarity=0.113  Sum_probs=115.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CCC-------------ceecChhhHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LNA-------------PFFADLNDLC   85 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g~-------------~~~~~~~~~~   85 (335)
                      ..+||+|||+|.||++||..|+++|++|++||++++..+.+.+           .|.             ..+++++. +
T Consensus         4 ~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (483)
T 3mog_A            4 NVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA-L   82 (483)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG-G
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH-h
Confidence            4679999999999999999999999999999999887654432           332             23556654 4


Q ss_pred             hcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593           86 ELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP  163 (335)
Q Consensus        86 ~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~  163 (335)
                       ++||+||+|+|.+.  ..+++.++. +.++++++|++.+|+.  ....+.+.++...++++.||+.+....+      .
T Consensus        83 -~~aDlVIeAVpe~~~vk~~v~~~l~-~~~~~~~IlasntSti--~i~~ia~~~~~p~~~ig~hf~~Pa~v~~------L  152 (483)
T 3mog_A           83 -AAADLVIEAASERLEVKKALFAQLA-EVCPPQTLLTTNTSSI--SITAIAAEIKNPERVAGLHFFNPAPVMK------L  152 (483)
T ss_dssp             -GGCSEEEECCCCCHHHHHHHHHHHH-HHSCTTCEEEECCSSS--CHHHHTTTSSSGGGEEEEEECSSTTTCC------E
T ss_pred             -cCCCEEEEcCCCcHHHHHHHHHHHH-HhhccCcEEEecCCCC--CHHHHHHHccCccceEEeeecChhhhCC------e
Confidence             78999999999984  467888885 6788999986544442  2255666665555799999999776431      1


Q ss_pred             ceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                      +.+    ++++.++++.++.+.++++.+|..++++.
T Consensus       153 vev----v~g~~Ts~e~~~~~~~l~~~lGk~~v~v~  184 (483)
T 3mog_A          153 VEV----VSGLATAAEVVEQLCELTLSWGKQPVRCH  184 (483)
T ss_dssp             EEE----EECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEE----ecCCCCCHHHHHHHHHHHHHhCCEEEEEe
Confidence            122    23444567788999999999999988885

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.62  E-value=6.3e-15  Score=134.27  Aligned_cols=161  Identities=11%  Similarity=0.151  Sum_probs=115.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcC--CCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSR--SDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr--~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      |||+|||+|.||..+|..|.+.|++|++||+  +++..+.+.+.|+.  .++.+++ .++|+||+|+|+....+.+.++.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~-~~aDvvi~~v~~~~~~~~~~~~~   77 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDV-YSCPVVISAVTPGVALGAARRAG   77 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHH-HTSSEEEECSCGGGHHHHHHHHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHH-hcCCEEEEECCCHHHHHHHHHHH
Confidence            6899999999999999999999999999998  44445545555766  5667776 79999999999987655566663


Q ss_pred             ccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHH
Q 044593          110 FQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFA  189 (335)
Q Consensus       110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~  189 (335)
                       +.+++  +|+|+++++....+.+.+.++... |+. +|+.++....  ..|.+ ++.    +++..     +.+++ |+
T Consensus        78 -~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g-~~~-~~v~~~~~~~--~~g~~-~~~----~g~~~-----~~~~~-l~  139 (264)
T 1i36_A           78 -RHVRG--IYVDINNISPETVRMASSLIEKGG-FVD-AAIMGSVRRK--GADIR-IIA----SGRDA-----EEFMK-LN  139 (264)
T ss_dssp             -TTCCS--EEEECSCCCHHHHHHHHHHCSSSE-EEE-EEECSCHHHH--GGGCE-EEE----ESTTH-----HHHHG-GG
T ss_pred             -HhcCc--EEEEccCCCHHHHHHHHHHHhhCC-eee-eeeeCCcccc--ccCCe-EEe----cCCcH-----HHhhh-HH
Confidence             45655  999998887666677777776533 665 5887754321  13544 432    33321     56778 99


Q ss_pred             hcCCEEEEeCh-HHHHHHHHHhhhh
Q 044593          190 KEGCRMVEMSC-FDHDKYAAGSQFV  213 (335)
Q Consensus       190 ~~G~~v~~~~~-~eHD~~~A~~s~l  213 (335)
                      .+|.+++++++ -....++.++...
T Consensus       140 ~~g~~~~~~~~~~g~~~~~kl~~n~  164 (264)
T 1i36_A          140 RYGLNIEVRGREPGDASAIKMLRSS  164 (264)
T ss_dssp             GGTCEEEECSSSTTHHHHHHHHHHH
T ss_pred             HcCCeeEECCCCcCHHHHHHHHHHH
Confidence            99999889886 3556666665544

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.61  E-value=8.8e-15  Score=142.73  Aligned_cols=190  Identities=14%  Similarity=0.076  Sum_probs=133.3

Q ss_pred             CCC-CeEEEEcccHHHHHHHHHHHHc------CCeEEEEcCC-CCcHHHHHhCCCce----ecChhhHhhcCCCEEEEec
Q 044593           29 STS-LKIAVIGFGNFGQFLAKAFARH------HHTLLVHSRS-DHSPAVRQQLNAPF----FADLNDLCELHPDVVLLST   96 (335)
Q Consensus        29 ~~~-~kI~IIG~G~mG~siA~~L~~~------G~~V~~~dr~-~~~~~~a~~~g~~~----~~~~~~~~~~~aDvVIlav   96 (335)
                      .++ +||+|||+|+||.++|..|++.      |++|++.+++ +...+.+.+.|+..    ..++.+++ +++|+||+++
T Consensus        51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa-~~ADVVILaV  129 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETV-SGSDLVLLLI  129 (525)
T ss_dssp             TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHH-HHCSEEEECS
T ss_pred             hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHH-hcCCEEEECC
Confidence            355 8999999999999999999999      9998765554 56677788889875    25677887 7899999999


Q ss_pred             CchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHh---hCCCCCceEeccccCCCCC-------c-ccccCCCcce
Q 044593           97 SILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLK---YLPQDFDILCTHPMFGPES-------A-KSSWENLPFM  165 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~---~l~~~~~~v~~HPmaG~~~-------~-~~~~~g~~~i  165 (335)
                      |+....+++.++. +.+++|++|+...+.   .+..+++   .++.++.++..||......       + ...+.|.+.+
T Consensus       130 P~~~~~eVl~eI~-p~LK~GaILs~AaGf---~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~l  205 (525)
T 3fr7_A          130 SDAAQADNYEKIF-SHMKPNSILGLSHGF---LLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSS  205 (525)
T ss_dssp             CHHHHHHHHHHHH-HHSCTTCEEEESSSH---HHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEE
T ss_pred             ChHHHHHHHHHHH-HhcCCCCeEEEeCCC---CHHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccEE
Confidence            9998888998885 789999998877764   3345553   5567788999999765443       1 1124677755


Q ss_pred             ecccccCCChhHHHHHHHHHHHHHhcCCE-EEEeChHHHH---H---HHHHhhhhHHHH---HHHHHHcCCC
Q 044593          166 YDKVRIGNDEERIKRVDKFLDVFAKEGCR-MVEMSCFDHD---K---YAAGSQFVTHTM---GRVLERFGVE  227 (335)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~v~~l~~~~G~~-v~~~~~~eHD---~---~~A~~s~lph~l---a~aL~~~~~~  227 (335)
                      ++..   .+ .+.+..+.+..+++.+|.. ++..+..++.   .   ..+++..+|.++   ..+++..|.+
T Consensus       206 iAv~---qd-~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAlieA~~d~lVe~G~~  273 (525)
T 3fr7_A          206 FAVH---QD-VDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMD  273 (525)
T ss_dssp             EEEE---EC-SSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEcC---CC-CCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHHHHHHHHHHHcCCC
Confidence            5421   11 1224567888999999975 5555554433   2   234445555543   3445565654

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.60  E-value=3e-15  Score=148.24  Aligned_cols=168  Identities=13%  Similarity=0.164  Sum_probs=122.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-CC-------CceecChhhHhhc---CCCEEEEecCch-
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-LN-------APFFADLNDLCEL---HPDVVLLSTSIL-   99 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-~g-------~~~~~~~~~~~~~---~aDvVIlavp~~-   99 (335)
                      |||+|||+|.||+.+|..|.++|++|++|||+++..+...+ .|       +..+.++.+++ .   ++|+||+|||.. 
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v-~~l~~aDvVilaVp~~~   80 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA-ASLKKPRKALILVQAGA   80 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHH-HHBCSSCEEEECCCCSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHH-hcccCCCEEEEecCChH
Confidence            68999999999999999999999999999999876654443 35       55567777776 4   599999999996 


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHH
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERI  178 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~  178 (335)
                      .+.++++++. +.++++++|+|++++.......+.+.++ .+..|++ .|+.|++...  ..|. .++.    +++   .
T Consensus        81 ~v~~vl~~l~-~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~-~pv~gg~~~a--~~g~-~i~~----gg~---~  148 (478)
T 1pgj_A           81 ATDSTIEQLK-KVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLG-MGISGGEEGA--RKGP-AFFP----GGT---L  148 (478)
T ss_dssp             HHHHHHHHHH-HHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEE-EEEESHHHHH--HHCC-EEEE----EEC---H
T ss_pred             HHHHHHHHHH-hhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEE-eeccCCHHHH--hcCC-eEec----cCC---H
Confidence            6889998885 6788999999998776544444444443 3567776 4888765421  1333 2332    232   4


Q ss_pred             HHHHHHHHHHHhcCCE-------EEEeChHHHHHHHHHhhh
Q 044593          179 KRVDKFLDVFAKEGCR-------MVEMSCFDHDKYAAGSQF  212 (335)
Q Consensus       179 ~~~~~v~~l~~~~G~~-------v~~~~~~eHD~~~A~~s~  212 (335)
                      +.++.++++|+.+|.+       ++++++......+.++++
T Consensus       149 ~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N  189 (478)
T 1pgj_A          149 SVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHN  189 (478)
T ss_dssp             HHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHH
Confidence            5678899999999987       677777666666666544

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.59  E-value=6.1e-15  Score=141.52  Aligned_cols=175  Identities=14%  Similarity=0.132  Sum_probs=118.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcC-------CeEEEEcCCCC-----cHHHHHhC--------------CCceecChh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHH-------HTLLVHSRSDH-----SPAVRQQL--------------NAPFFADLN   82 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G-------~~V~~~dr~~~-----~~~~a~~~--------------g~~~~~~~~   82 (335)
                      ..+|||+|||+|.||+++|..|.++|       ++|++|||+++     ..+...+.              ++..++++.
T Consensus        19 ~~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~   98 (375)
T 1yj8_A           19 DGPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLA   98 (375)
T ss_dssp             HSCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTH
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHH
Confidence            34679999999999999999999999       99999999987     55433331              233456677


Q ss_pred             hHhhcCCCEEEEecCchhHHHHHhhcccc----ccCCccEEEEcCCC-Cc------hHHHHHHhhCCCCCceEeccccCC
Q 044593           83 DLCELHPDVVLLSTSILSTQSVLKSIPFQ----RLKRSTLFVDVLSV-KE------FPRNLFLKYLPQDFDILCTHPMFG  151 (335)
Q Consensus        83 ~~~~~~aDvVIlavp~~~~~~vl~~l~~~----~l~~~~iVvd~~Sv-K~------~~~~~l~~~l~~~~~~v~~HPmaG  151 (335)
                      +++ .++|+||+|||...+.+++.++. +    .++++++|+++++. ..      .+.+.+.+.++.. ..+    ..|
T Consensus        99 ea~-~~aDvVilav~~~~~~~vl~~i~-~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~v----~~g  171 (375)
T 1yj8_A           99 SVI-NDADLLIFIVPCQYLESVLASIK-ESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIP-CSA----LSG  171 (375)
T ss_dssp             HHH-TTCSEEEECCCHHHHHHHHHHHT-C---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSC-EEE----EEC
T ss_pred             HHH-cCCCEEEEcCCHHHHHHHHHHHh-hhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCC-EEE----EeC
Confidence            766 78999999999999999999985 6    78899999998743 21      2334444444311 111    234


Q ss_pred             CCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          152 PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       152 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      |....+...+.+..+.   ++..  +.+..+.++++|+..|.+++..+......+.++.-+..+
T Consensus       172 p~~a~~v~~g~~~~~~---~~~~--~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~  230 (375)
T 1yj8_A          172 ANIAMDVAMENFSEAT---IGGN--DKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIIT  230 (375)
T ss_dssp             SCCHHHHHTTCCEEEE---EECS--CHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHH
T ss_pred             CchHHHHHhCCCeEEE---EecC--CHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHH
Confidence            4432222345443332   1221  235678899999999999888887666666655444433

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.59  E-value=6.7e-15  Score=138.38  Aligned_cols=174  Identities=14%  Similarity=0.137  Sum_probs=118.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcC--CCCcHHHHHhCCC-----------ceec--ChhhHhhcCCCEEEEec
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSR--SDHSPAVRQQLNA-----------PFFA--DLNDLCELHPDVVLLST   96 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr--~~~~~~~a~~~g~-----------~~~~--~~~~~~~~~aDvVIlav   96 (335)
                      |||+|||+|.||+.+|..|.++|++|++|||  +++..+...+.|.           ...+  ++.+.+ .++|+||+|+
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~D~vi~~v   79 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL-ENAEVVLLGV   79 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH-TTCSEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHH-hcCCEEEEcC
Confidence            6899999999999999999999999999999  8776665666553           2333  555656 7899999999


Q ss_pred             CchhHHHHHhhccccccCCccEEEEcC-CC---CchHHHHHHhhCCC--CCceEeccccCCCCCcccccCCCcceecccc
Q 044593           97 SILSTQSVLKSIPFQRLKRSTLFVDVL-SV---KEFPRNLFLKYLPQ--DFDILCTHPMFGPESAKSSWENLPFMYDKVR  170 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l~~~~iVvd~~-Sv---K~~~~~~l~~~l~~--~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~  170 (335)
                      |...+.+++.++. + ++++++|++++ ++   +....+.+.+.++.  +..+ ....+.||........+.+..+.   
T Consensus        80 ~~~~~~~v~~~i~-~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~-~~~~~~~p~~~~~~~~g~~~~~~---  153 (335)
T 1txg_A           80 STDGVLPVMSRIL-P-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRE-RTVAITGPAIAREVAKRMPTTVV---  153 (335)
T ss_dssp             CGGGHHHHHHHHT-T-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGG-GEEEEESSCCHHHHHTTCCEEEE---
T ss_pred             ChHHHHHHHHHHh-c-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCC-cEEEEECCCcHHHHHccCCcEEE---
Confidence            9999999999995 6 88899999986 44   22122334444432  1101 11224455543222334433222   


Q ss_pred             cCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhH
Q 044593          171 IGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVT  214 (335)
Q Consensus       171 ~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lp  214 (335)
                      ++..  +.+..+.++++|+..|.+++..+.-.+..+.+++.+..
T Consensus       154 ~~~~--~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~  195 (335)
T 1txg_A          154 FSSP--SESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVY  195 (335)
T ss_dssp             EECS--CHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEeC--CHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHH
Confidence            1222  24567889999999999888887777766665544433

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.58  E-value=8.4e-15  Score=130.06  Aligned_cols=167  Identities=14%  Similarity=0.152  Sum_probs=111.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      ..+|||+|||+|.||..++..|.+.|++|+++||+++..+...+.|+... +..+++ .++|+||+|+|......++. +
T Consensus        26 ~~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~-~~~DvVi~av~~~~~~~v~~-l  102 (215)
T 2vns_A           26 DEAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAV-SSPEVIFVAVFREHYSSLCS-L  102 (215)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHT-TSCSEEEECSCGGGSGGGGG-G
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHH-hCCCEEEECCChHHHHHHHH-H
Confidence            35689999999999999999999999999999999876665555576654 666766 78999999999887666665 5


Q ss_pred             cccccCCccEEEEcCCCCchH--------HHHHHhhCCCCCceEe-ccccCCCCCcccccCCCcceecccccCCChhHHH
Q 044593          109 PFQRLKRSTLFVDVLSVKEFP--------RNLFLKYLPQDFDILC-THPMFGPESAKSSWENLPFMYDKVRIGNDEERIK  179 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~SvK~~~--------~~~l~~~l~~~~~~v~-~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~  179 (335)
                      . +.+ ++++|+|+++.....        .+.+.+.++. .+++. .+++.+.........+...++.   .+.   +.+
T Consensus       103 ~-~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~-~~vv~~~n~~~~~~~~~~~~~g~~~~~~---~g~---~~~  173 (215)
T 2vns_A          103 S-DQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPT-CTVVKAFNVISAWTLQAGPRDGNRQVPI---CGD---QPE  173 (215)
T ss_dssp             H-HHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTT-SEEEEECTTBCHHHHHTCSCSSCCEEEE---EES---CHH
T ss_pred             H-Hhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCC-CeEEeccccccHhHhcccccCCceeEEE---ecC---CHH
Confidence            3 344 789999998875421        2344466653 34443 2333322211111123221221   222   245


Q ss_pred             HHHHHHHHHHhcCCEEEEeChHHHHHHH
Q 044593          180 RVDKFLDVFAKEGCRMVEMSCFDHDKYA  207 (335)
Q Consensus       180 ~~~~v~~l~~~~G~~v~~~~~~eHD~~~  207 (335)
                      ..+.++++|+.+|.+++.+++......+
T Consensus       174 ~~~~v~~ll~~~G~~~~~~g~~~~~~~~  201 (215)
T 2vns_A          174 AKRAVSEMALAMGFMPVDMGSLASAWEV  201 (215)
T ss_dssp             HHHHHHHHHHHTTCEEEECCSGGGHHHH
T ss_pred             HHHHHHHHHHHcCCceEeecchhhhhHh
Confidence            7788999999999999999876554443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.57  E-value=1.1e-13  Score=134.84  Aligned_cols=174  Identities=15%  Similarity=0.117  Sum_probs=121.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC------------------CCceecChhhHhhcCC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL------------------NAPFFADLNDLCELHP   89 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~------------------g~~~~~~~~~~~~~~a   89 (335)
                      .+.+|||+|||+|.||..+|..|++ |++|++||++++..+...+.                  ++..++++.+++ ++|
T Consensus        33 ~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~-~~a  110 (432)
T 3pid_A           33 GSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY-RNA  110 (432)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH-TTC
T ss_pred             ccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH-hCC
Confidence            3567899999999999999999998 99999999998876644431                  345567877777 899


Q ss_pred             CEEEEecCch-----------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCccc-
Q 044593           90 DVVLLSTSIL-----------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKS-  157 (335)
Q Consensus        90 DvVIlavp~~-----------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~-  157 (335)
                      |+||+|||..           .+.++++.+. + ++++++|++.+++.....+.+.+.+...  .+...|.++.+.... 
T Consensus       111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~-~-l~~g~iVV~~STv~pgtt~~l~~~l~~~--~v~~sPe~~~~G~A~~  186 (432)
T 3pid_A          111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVT-E-INPNAVMIIKSTIPVGFTRDIKERLGID--NVIFSPEFLREGRALY  186 (432)
T ss_dssp             SEEEECCCCEEETTTTEEECHHHHHHHHHHH-H-HCTTSEEEECSCCCTTHHHHHHHHHTCC--CEEECCCCCCTTSHHH
T ss_pred             CEEEEeCCCccccccccccHHHHHHHHHHHH-h-cCCCcEEEEeCCCChHHHHHHHHHHhhc--cEeecCccCCcchhhh
Confidence            9999999986           4778888885 5 8999999999999887778777766542  455578887664310 


Q ss_pred             ccCCCcceecccccCCChhHHHHHHHHHHHHHh--cC--CEEEEeChHHHHHHHHHhhhhHH
Q 044593          158 SWENLPFMYDKVRIGNDEERIKRVDKFLDVFAK--EG--CRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       158 ~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~--~G--~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      .+...+.++    ++.+.   +.++.+.+++..  ++  ..++.+++. -.+++.++.+.-.
T Consensus       187 ~~l~p~rIv----vG~~~---~~~~~~~~ll~~~~~~~~~~v~~~~~~-~AE~~Kl~~N~~~  240 (432)
T 3pid_A          187 DNLHPSRIV----IGERS---ARAERFADLLKEGAIKQDIPTLFTDST-EAEAIKLFANTYL  240 (432)
T ss_dssp             HHHSCSCEE----ESSCS---HHHHHHHHHHHHHCSSSSCCEEECCHH-HHHHHHHHHHHHH
T ss_pred             cccCCceEE----ecCCH---HHHHHHHHHHHhhhccCCCeEEecCcc-HHHHHHHHHHHHH
Confidence            001111222    34443   356777888875  43  345566554 4566776655444

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.57  E-value=2.1e-14  Score=134.71  Aligned_cols=160  Identities=13%  Similarity=0.089  Sum_probs=119.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-----------hCCC--------------ceecChhh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-----------QLNA--------------PFFADLND   83 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-----------~~g~--------------~~~~~~~~   83 (335)
                      +...||+|||+|.||+.||..++.+|++|++||++++..+.+.           +.|.              ..++++.+
T Consensus         4 p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~   83 (319)
T 3ado_A            4 PAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE   83 (319)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence            3467999999999999999999999999999999987543221           1121              23567777


Q ss_pred             HhhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCC
Q 044593           84 LCELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWEN  161 (335)
Q Consensus        84 ~~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g  161 (335)
                      .+ ++||+||-|+|.+.  -.+++.++. ..+++++++...+|+  ..+..+.+.+...-+|++.||...+..-      
T Consensus        84 a~-~~ad~ViEav~E~l~iK~~lf~~l~-~~~~~~aIlaSNTSs--l~is~ia~~~~~p~r~ig~HffNP~~~m------  153 (319)
T 3ado_A           84 AV-EGVVHIQECVPENLDLKRKIFAQLD-SIVDDRVVLSSSSSC--LLPSKLFTGLAHVKQCIVAHPVNPPYYI------  153 (319)
T ss_dssp             HT-TTEEEEEECCCSCHHHHHHHHHHHH-TTCCSSSEEEECCSS--CCHHHHHTTCTTGGGEEEEEECSSTTTC------
T ss_pred             Hh-ccCcEEeeccccHHHHHHHHHHHHH-HHhhhcceeehhhhh--ccchhhhhhccCCCcEEEecCCCCcccc------
Confidence            66 89999999999875  578999995 678999999887766  4456677666655689999998776642      


Q ss_pred             CcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHH
Q 044593          162 LPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFD  202 (335)
Q Consensus       162 ~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~e  202 (335)
                       | +++  +++++.++.+.++.+.++.+.+|.+++.+..+.
T Consensus       154 -~-LVE--iv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~  190 (319)
T 3ado_A          154 -P-LVE--LVPHPETSPATVDRTHALMRKIGQSPVRVLKEI  190 (319)
T ss_dssp             -C-EEE--EEECTTCCHHHHHHHHHHHHHTTCEEEECSSCC
T ss_pred             -c-hHH--hcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCC
Confidence             2 222  234566778889999999999999988775443

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.57  E-value=2e-14  Score=141.34  Aligned_cols=176  Identities=16%  Similarity=0.159  Sum_probs=117.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-------------------C-CCceecChhhHhhcCCCE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-------------------L-NAPFFADLNDLCELHPDV   91 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-------------------~-g~~~~~~~~~~~~~~aDv   91 (335)
                      |||+|||+|.||..+|..|.++|++|++||++++..+...+                   . ++..++++.+++ +++|+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~-~~aDv   81 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAV-PEADI   81 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHG-GGCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHH-hcCCE
Confidence            79999999999999999999999999999999876654433                   1 134566777776 78999


Q ss_pred             EEEecCch----------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC---CCc-eEeccccCCCCCccc
Q 044593           92 VLLSTSIL----------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ---DFD-ILCTHPMFGPESAKS  157 (335)
Q Consensus        92 VIlavp~~----------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~---~~~-~v~~HPmaG~~~~~~  157 (335)
                      ||+|||..          .+.++++++. +.++++++|++.+++.....+.+.+.+..   +.. .+..+-..||+...+
T Consensus        82 ViiaVptp~~~~~~~dl~~v~~v~~~i~-~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~e  160 (450)
T 3gg2_A           82 IFIAVGTPAGEDGSADMSYVLDAARSIG-RAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKE  160 (450)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHH-HHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCT
T ss_pred             EEEEcCCCcccCCCcChHHHHHHHHHHH-hhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhhcc
Confidence            99999988          7889999985 67899999999998765555544433211   000 011122335554322


Q ss_pred             ccC----CCc-ceecccccCCChhHHHHHHHHHHHHHhcCC---EEEEeChHHHHHHHHHhhhhHHH
Q 044593          158 SWE----NLP-FMYDKVRIGNDEERIKRVDKFLDVFAKEGC---RMVEMSCFDHDKYAAGSQFVTHT  216 (335)
Q Consensus       158 ~~~----g~~-~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~---~v~~~~~~eHD~~~A~~s~lph~  216 (335)
                      +..    ..| .++    ++++  +++..+.++++++.++.   .++..+. .--+++.+..+.-..
T Consensus       161 G~~~~~~~~p~~iv----vG~~--~~~~~~~~~~l~~~~~~~~~~~~~~d~-~~aE~~Kl~~N~~~a  220 (450)
T 3gg2_A          161 GNAIDDFMKPDRVV----VGVD--SDRARELITSLYKPMLLNNFRVLFMDI-ASAEMTKYAANAMLA  220 (450)
T ss_dssp             TSHHHHHHSCSCEE----EEES--SHHHHHHHHHHHTTTCCSCCCEEEECH-HHHHHHHHHHHHHHH
T ss_pred             cchhhhccCCCEEE----EEcC--CHHHHHHHHHHHHHHhcCCCeEEecCH-HHHHHHHHHHHHHHH
Confidence            111    111 122    2332  24577889999998875   3444454 445677776665443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.56  E-value=3e-14  Score=139.55  Aligned_cols=175  Identities=15%  Similarity=0.171  Sum_probs=115.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-------------------CC-CceecChhhHhhcCCCE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-------------------LN-APFFADLNDLCELHPDV   91 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-------------------~g-~~~~~~~~~~~~~~aDv   91 (335)
                      |||+|||+|.||..+|..|.++|++|++||++++..+...+                   .| +..++++.+.+ .++|+
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~-~~aDv   79 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAV-LDSDV   79 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH-HTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHh-ccCCE
Confidence            69999999999999999999999999999999877654444                   23 44566777666 79999


Q ss_pred             EEEecCchh----------HHHHHhhccccccCC---ccEEEEcCCCCchH-HHHHHhhCCC--CCce-EeccccCCCCC
Q 044593           92 VLLSTSILS----------TQSVLKSIPFQRLKR---STLFVDVLSVKEFP-RNLFLKYLPQ--DFDI-LCTHPMFGPES  154 (335)
Q Consensus        92 VIlavp~~~----------~~~vl~~l~~~~l~~---~~iVvd~~SvK~~~-~~~l~~~l~~--~~~~-v~~HPmaG~~~  154 (335)
                      ||+|||...          +.++++++. +.+++   +++|++.+++.... .+.+.+.++.  +..+ +..+-+++|+.
T Consensus        80 viiaVptp~~~~~~~dl~~v~~v~~~i~-~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~  158 (436)
T 1mv8_A           80 SFICVGTPSKKNGDLDLGYIETVCREIG-FAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEF  158 (436)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHH-HHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCC
T ss_pred             EEEEcCCCcccCCCcchHHHHHHHHHHH-HHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECccc
Confidence            999999766          888888885 57888   89999988776544 4444433321  1111 11111223443


Q ss_pred             ccccc-----CCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHH
Q 044593          155 AKSSW-----ENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       155 ~~~~~-----~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph  215 (335)
                      ..++.     ...+.++    ++.+  +++..+.++++++.+|..++. +...+..+++++.+.-+
T Consensus       159 ~~~G~~~~~~~~~~~iv----~G~~--~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~~~  217 (436)
T 1mv8_A          159 LRESTAIKDYDFPPMTV----IGEL--DKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNVWH  217 (436)
T ss_dssp             CCTTSHHHHHHSCSCEE----EEES--SHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHHHH
T ss_pred             ccccccchhccCCCEEE----EEcC--CHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHHHH
Confidence            21110     0111222    2322  245667889999999987666 44556667777665544

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.56  E-value=7.5e-14  Score=138.35  Aligned_cols=182  Identities=15%  Similarity=0.122  Sum_probs=121.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHhC-------------------CCceecChhhHhhc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQL-------------------NAPFFADLNDLCEL   87 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~~~-------------------g~~~~~~~~~~~~~   87 (335)
                      +++|||+|||+|.||..+|..|.++  |++|++||++++..+...+.                   ++..++++.+.+ .
T Consensus         7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~-~   85 (481)
T 2o3j_A            7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAI-A   85 (481)
T ss_dssp             CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHH-H
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHh-h
Confidence            3468999999999999999999998  78999999998776644431                   223445665666 7


Q ss_pred             CCCEEEEecCch---------------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC------CC-ceEe
Q 044593           88 HPDVVLLSTSIL---------------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ------DF-DILC  145 (335)
Q Consensus        88 ~aDvVIlavp~~---------------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~------~~-~~v~  145 (335)
                      ++|+||+|||..               .+.++++.+. +.++++++|++.+++.....+.+.+.+..      +. .++.
T Consensus        86 ~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~-~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~  164 (481)
T 2o3j_A           86 EADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIA-QYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVL  164 (481)
T ss_dssp             HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHH-HHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEE
T ss_pred             cCCEEEEecCCccccccccccCCCcHHHHHHHHHHHH-HhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEE
Confidence            899999998764               2778888885 67899999999888776555555443321      12 2466


Q ss_pred             ccccCCCCCcc--cccCCCcceecccccCCC--hhHHHHHHHHHHHHHhcCC-EEEEeChHHHHHHHHHhhhhHHHH
Q 044593          146 THPMFGPESAK--SSWENLPFMYDKVRIGND--EERIKRVDKFLDVFAKEGC-RMVEMSCFDHDKYAAGSQFVTHTM  217 (335)
Q Consensus       146 ~HPmaG~~~~~--~~~~g~~~i~~~~~~~~~--~~~~~~~~~v~~l~~~~G~-~v~~~~~~eHD~~~A~~s~lph~l  217 (335)
                      .+|-+..+...  +...... ++    ++++  ...++..+.++++++.+|. .++.++...-..+++++.+..+.+
T Consensus       165 ~~Pe~~~~G~a~~~~~~~~~-iv----iG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~  236 (481)
T 2o3j_A          165 SNPEFLAEGTAMKDLANPDR-VL----IGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQ  236 (481)
T ss_dssp             ECCCCCCTTCHHHHHHSCSC-EE----EEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             eCcccccccchhhcccCCCE-EE----EEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHH
Confidence            67765433210  0011111 22    2222  2223567889999999985 555555455578888887776544

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.56  E-value=4.8e-14  Score=139.09  Aligned_cols=158  Identities=13%  Similarity=0.075  Sum_probs=113.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC-----------CceecChhhHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN-----------APFFADLNDLC   85 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g-----------~~~~~~~~~~~   85 (335)
                      .+..+||+|||+|.||+.||..|.++|++|++||++++..+.+.+           .|           ...+++.+ .+
T Consensus        34 ~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~  112 (463)
T 1zcj_A           34 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-EL  112 (463)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGG-GG
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHH-HH
Confidence            445789999999999999999999999999999999875543322           11           12345664 44


Q ss_pred             hcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593           86 ELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP  163 (335)
Q Consensus        86 ~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~  163 (335)
                       .+||+||+|+|.+.  ...++.++. +.++++++|++.+|.  .....+.+.+....+|++.||+.....      ...
T Consensus       113 -~~aDlVIeaVpe~~~~k~~v~~~l~-~~~~~~~ii~snTs~--~~~~~la~~~~~~~~~ig~hf~~P~~~------~~l  182 (463)
T 1zcj_A          113 -STVDLVVEAVFEDMNLKKKVFAELS-ALCKPGAFLCTNTSA--LNVDDIASSTDRPQLVIGTHFFSPAHV------MRL  182 (463)
T ss_dssp             -TTCSEEEECCCSCHHHHHHHHHHHH-HHSCTTCEEEECCSS--SCHHHHHTTSSCGGGEEEEEECSSTTT------CCE
T ss_pred             -CCCCEEEEcCCCCHHHHHHHHHHHH-hhCCCCeEEEeCCCC--cCHHHHHHHhcCCcceEEeecCCCccc------cee
Confidence             78999999999874  467888884 578899999874433  344566666654457999999853221      111


Q ss_pred             ceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeCh
Q 044593          164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSC  200 (335)
Q Consensus       164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~  200 (335)
                      +.+    +.++.++++.++.+.++++.+|..++++..
T Consensus       183 vev----v~g~~t~~e~~~~~~~l~~~lGk~~v~v~~  215 (463)
T 1zcj_A          183 LEV----IPSRYSSPTTIATVMSLSKKIGKIGVVVGN  215 (463)
T ss_dssp             EEE----EECSSCCHHHHHHHHHHHHHTTCEEEEBCC
T ss_pred             EEE----eCCCCCCHHHHHHHHHHHHHhCCEEEEECC
Confidence            111    233344567889999999999999888863

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.55  E-value=6.3e-14  Score=132.96  Aligned_cols=205  Identities=11%  Similarity=0.137  Sum_probs=130.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcC-------CeEEEEcCCCC-----cHHHHHhC--------------CCceecChh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHH-------HTLLVHSRSDH-----SPAVRQQL--------------NAPFFADLN   82 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G-------~~V~~~dr~~~-----~~~~a~~~--------------g~~~~~~~~   82 (335)
                      |..|||+|||+|.||+++|..|.++|       ++|++|||+++     ..+...+.              ++..++++.
T Consensus         6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
T 1x0v_A            6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVV   85 (354)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHH
Confidence            44679999999999999999999999       99999999987     55443321              123345676


Q ss_pred             hHhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCc-------hHHHHHHhhCCCCCceEeccccCCCCCc
Q 044593           83 DLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKE-------FPRNLFLKYLPQDFDILCTHPMFGPESA  155 (335)
Q Consensus        83 ~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~-------~~~~~l~~~l~~~~~~v~~HPmaG~~~~  155 (335)
                      +++ .++|+||+|||...+.++++++. +.++++++|+++++.-.       .+.+.+.+.++.. ..+    ..||...
T Consensus        86 ~~~-~~aD~Vilav~~~~~~~v~~~i~-~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~v----~~gp~~a  158 (354)
T 1x0v_A           86 QAA-EDADILIFVVPHQFIGKICDQLK-GHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP-MSV----LMGANIA  158 (354)
T ss_dssp             HHH-TTCSEEEECCCGGGHHHHHHHHT-TCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC-EEE----EECSCCH
T ss_pred             HHH-cCCCEEEEeCCHHHHHHHHHHHH-hhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC-EEE----EECCCcH
Confidence            766 78999999999999999999995 67889999999865321       2234444443311 111    2234332


Q ss_pred             ccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHHHHHcCCCCC---CCC
Q 044593          156 KSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRVLERFGVESS---PIN  232 (335)
Q Consensus       156 ~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~aL~~~~~~~~---~~~  232 (335)
                      .....+.+..+.   ++..  +.+..+.++++|+..|.+++..+...+..+.+++-+..+....++........   .+.
T Consensus       159 ~~v~~g~~~~~~---~~~~--~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~  233 (354)
T 1x0v_A          159 SEVADEKFCETT---IGCK--DPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVI  233 (354)
T ss_dssp             HHHHTTCCEEEE---EECS--SHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHhcCCceEE---EEEC--CHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHH
Confidence            222345443332   1221  24567889999999999988888766666666655544433222222222110   122


Q ss_pred             CcchhhHHHHHHH
Q 044593          233 TKGYETLLDLVDN  245 (335)
Q Consensus       233 ~~gf~~~~rl~~~  245 (335)
                      ..+++.+.+++..
T Consensus       234 ~~~~~E~~~la~a  246 (354)
T 1x0v_A          234 RLGLMEMIAFAKL  246 (354)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3456666676665

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.55  E-value=8.6e-14  Score=136.42  Aligned_cols=173  Identities=14%  Similarity=0.181  Sum_probs=115.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------------------CCceecChhhHhhcCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------------------NAPFFADLNDLCELHPD   90 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------------------g~~~~~~~~~~~~~~aD   90 (335)
                      .-+|+|||+|.||..+|..|.++||+|++||++++..+...+.                    ++..++++.+++ ++||
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~-~~aD   86 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGV-KDAD   86 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH-TTCS
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHH-hcCC
Confidence            4689999999999999999999999999999999887654431                    134567887777 7999


Q ss_pred             EEEEecCch-----------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhC----CCCCceEeccccCCCCCc
Q 044593           91 VVLLSTSIL-----------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL----PQDFDILCTHPMFGPESA  155 (335)
Q Consensus        91 vVIlavp~~-----------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l----~~~~~~v~~HPmaG~~~~  155 (335)
                      +||+|||..           .+.++++.+. +.++++++|++.+++.....+.+.+.+    +..-..+..    +|+..
T Consensus        87 vvii~Vptp~~~~~~~~Dl~~v~~v~~~i~-~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~~d~~v~~----~Pe~a  161 (446)
T 4a7p_A           87 AVFIAVGTPSRRGDGHADLSYVFAAAREIA-ENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVS----NPEFL  161 (446)
T ss_dssp             EEEECCCCCBCTTTCCBCTHHHHHHHHHHH-HSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTTSCCEEEE----CCCCC
T ss_pred             EEEEEcCCCCccccCCccHHHHHHHHHHHH-HhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCCCCceEEe----Ccccc
Confidence            999997655           4788888885 678999999999887765555544332    211112333    44443


Q ss_pred             ccccC----CCc-ceecccccCCChhHHHHHHHHHHHHHhcCCE---EEEeChHHHHHHHHHhhhhHH
Q 044593          156 KSSWE----NLP-FMYDKVRIGNDEERIKRVDKFLDVFAKEGCR---MVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       156 ~~~~~----g~~-~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~---v~~~~~~eHD~~~A~~s~lph  215 (335)
                      .++-.    ..| .++    ++++  +++..+.++++++.++.+   ++.++...--+++.+..+.-.
T Consensus       162 ~eG~a~~d~~~p~~iv----vG~~--~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~  223 (446)
T 4a7p_A          162 REGAAIEDFKRPDRVV----VGTE--DEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFL  223 (446)
T ss_dssp             CTTSHHHHHHSCSCEE----EECS--CHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCCCEEE----EeCC--cHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence            22111    112 222    2443  245678889999988764   355544455566776665544

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.54  E-value=3.5e-14  Score=146.95  Aligned_cols=157  Identities=15%  Similarity=0.075  Sum_probs=115.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-----------HhCC-------------CceecChhhH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-----------QQLN-------------APFFADLNDL   84 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-----------~~~g-------------~~~~~~~~~~   84 (335)
                      ...+||+|||+|.||+.||..|.++|++|++||++++..+.+           .+.|             +..++++ +.
T Consensus       312 ~~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~  390 (715)
T 1wdk_A          312 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GD  390 (715)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TT
T ss_pred             ccCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HH
Confidence            457899999999999999999999999999999998765432           2234             2344566 44


Q ss_pred             hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                      + .+||+||+|+|.+.  ...++.++. +.++++++|++.+|+-  .+..+.+.+....+|++.||+.+....      .
T Consensus       391 ~-~~aDlVIeaV~e~~~vk~~v~~~l~-~~~~~~~IlasntStl--~i~~la~~~~~~~~~ig~hf~~P~~~~------~  460 (715)
T 1wdk_A          391 F-GNVDLVVEAVVENPKVKQAVLAEVE-NHVREDAILASNTSTI--SISLLAKALKRPENFVGMHFFNPVHMM------P  460 (715)
T ss_dssp             G-GGCSEEEECCCSCHHHHHHHHHHHH-TTSCTTCEEEECCSSS--CHHHHGGGCSCGGGEEEEECCSSTTTC------C
T ss_pred             H-CCCCEEEEcCCCCHHHHHHHHHHHH-hhCCCCeEEEeCCCCC--CHHHHHHHhcCccceEEEEccCCcccC------c
Confidence            5 78999999999775  467888884 6788999998877653  335666666544579999998754421      1


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeCh
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSC  200 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~  200 (335)
                      .+.+    +.++.++++.++.+.++++.+|..++++..
T Consensus       461 lvev----v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d  494 (715)
T 1wdk_A          461 LVEV----IRGEKSSDLAVATTVAYAKKMGKNPIVVND  494 (715)
T ss_dssp             EEEE----EECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             eEEE----EECCCCCHHHHHHHHHHHHHhCCEeEEEcC
Confidence            1111    223344567889999999999999888763

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.54  E-value=7.5e-14  Score=137.86  Aligned_cols=178  Identities=15%  Similarity=0.121  Sum_probs=113.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHh-------------------CCCceecChhhHhhcCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQ-------------------LNAPFFADLNDLCELHP   89 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~~-------------------~g~~~~~~~~~~~~~~a   89 (335)
                      +|||+|||+|.||..+|..|.++  |++|++||++++..+...+                   .++..++++.+.+ .++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~-~~a   83 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAI-KEA   83 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHH-HHC
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHH-hcC
Confidence            58999999999999999999999  8999999999876554321                   2445566777666 789


Q ss_pred             CEEEEecCchh---------------HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC-CCceEeccccCCCC
Q 044593           90 DVVLLSTSILS---------------TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ-DFDILCTHPMFGPE  153 (335)
Q Consensus        90 DvVIlavp~~~---------------~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~-~~~~v~~HPmaG~~  153 (335)
                      |+||+|||...               +.++++++. +.++++++|++++++.....+.+.+.+.. +..++.++-+++|+
T Consensus        84 DvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~-~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe  162 (467)
T 2q3e_A           84 DLVFISVNTPTKTYGMGKGRAADLKYIEACARRIV-QNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPE  162 (467)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHH-HTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCC
T ss_pred             CEEEEEcCCchhhccccccCCCcHHHHHHHHHHHH-hhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHH
Confidence            99999997644               456777774 56889999999988776555555444321 11122222234444


Q ss_pred             CcccccCCCcc--eeccc--ccCCC--hhHHHHHHHHHHHHHhc-CCEEEEeChHHHHHHHHHhhhh
Q 044593          154 SAKSSWENLPF--MYDKV--RIGND--EERIKRVDKFLDVFAKE-GCRMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       154 ~~~~~~~g~~~--i~~~~--~~~~~--~~~~~~~~~v~~l~~~~-G~~v~~~~~~eHD~~~A~~s~l  213 (335)
                      ...   .|...  +..+.  +++++  ..+++..+.++++++.+ |..++.++......++.++.+.
T Consensus       163 ~~~---~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~  226 (467)
T 2q3e_A          163 FLA---EGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANA  226 (467)
T ss_dssp             CCC---TTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHH
T ss_pred             Hhh---cccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHH
Confidence            422   12211  01110  12331  13566788999999998 6555554444444555554443

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.54  E-value=4.8e-15  Score=141.57  Aligned_cols=167  Identities=13%  Similarity=0.168  Sum_probs=110.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCC--------------CceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN--------------APFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g--------------~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |||+|||+|.||+++|..|.++|++|++|||+++..+...+.+              +..++++.+++ .++|+||+|||
T Consensus        16 ~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~aDvVilav~   94 (366)
T 1evy_A           16 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY-NGAEIILFVIP   94 (366)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH-TTCSSEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHH-cCCCEEEECCC
Confidence            3999999999999999999999999999999987665444332              33445677766 78999999999


Q ss_pred             chhHHHHHhh----ccccccCC-ccEEEEcC-CCCch----HHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceec
Q 044593           98 ILSTQSVLKS----IPFQRLKR-STLFVDVL-SVKEF----PRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYD  167 (335)
Q Consensus        98 ~~~~~~vl~~----l~~~~l~~-~~iVvd~~-SvK~~----~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~  167 (335)
                      ...+.+++.+    +. +.+++ +++|++++ ++...    +.+.+.+.++.. .+   ....||........+.+.++.
T Consensus        95 ~~~~~~v~~~~~~gl~-~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~-~~---~v~~gp~~~~~~~~g~~~~~~  169 (366)
T 1evy_A           95 TQFLRGFFEKSGGNLI-AYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSP-LL---SVLAGPSFAIEVATGVFTCVS  169 (366)
T ss_dssp             HHHHHHHHHHHCHHHH-HHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGG-GE---EEEESSCCHHHHHTTCCEEEE
T ss_pred             hHHHHHHHHHhHHHHH-HhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCC-cE---EEEeCCChHHHHHhCCceEEE
Confidence            9989999988    85 56778 89999987 33221    223333322211 00   012344432222345443332


Q ss_pred             ccccCCChhHHHHHHHHHHHHHhc--CCEEEEeChHHHHHHHHH
Q 044593          168 KVRIGNDEERIKRVDKFLDVFAKE--GCRMVEMSCFDHDKYAAG  209 (335)
Q Consensus       168 ~~~~~~~~~~~~~~~~v~~l~~~~--G~~v~~~~~~eHD~~~A~  209 (335)
                         ++..  +.+..+.++++|+..  |.+++..+...+..+.++
T Consensus       170 ---~~~~--~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~  208 (366)
T 1evy_A          170 ---IASA--DINVARRLQRIMSTGDRSFVCWATTDTVGCEVASA  208 (366)
T ss_dssp             ---EECS--SHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHH
T ss_pred             ---EecC--CHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHH
Confidence               1221  235678899999999  888887776555544444

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.53  E-value=3.6e-13  Score=130.52  Aligned_cols=174  Identities=13%  Similarity=0.046  Sum_probs=118.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCC------------------ceecChhhHhhcCCCEEE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNA------------------PFFADLNDLCELHPDVVL   93 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~------------------~~~~~~~~~~~~~aDvVI   93 (335)
                      |||+|||+|.||..+|..|.+ |++|++||++++..+...+.+.                  ..+++..+.+ .++|+||
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~-~~aDvvi   78 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAY-KEAELVI   78 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH-HHCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHh-cCCCEEE
Confidence            699999999999999999999 9999999999887765555443                  2345665655 6899999


Q ss_pred             EecCch-----------hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcc-cccCC
Q 044593           94 LSTSIL-----------STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAK-SSWEN  161 (335)
Q Consensus        94 lavp~~-----------~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~-~~~~g  161 (335)
                      +|||..           .+.++++.+. + ++++++|++.+++.....+.+.+.++..  .+...|.+..+... ..+..
T Consensus        79 iavpt~~~~~~~~~dl~~v~~v~~~i~-~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~~  154 (402)
T 1dlj_A           79 IATPTNYNSRINYFDTQHVETVIKEVL-S-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNLY  154 (402)
T ss_dssp             ECCCCCEETTTTEECCHHHHHHHHHHH-H-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHHS
T ss_pred             EecCCCcccCCCCccHHHHHHHHHHHH-h-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhcccC
Confidence            999987           5888998885 6 8899999997777777778888777654  45556765443211 00111


Q ss_pred             CcceecccccCCCh----hHHHHHHHHHHHHHhcCCE---EEEeChHHHHHHHHHhhhhHH
Q 044593          162 LPFMYDKVRIGNDE----ERIKRVDKFLDVFAKEGCR---MVEMSCFDHDKYAAGSQFVTH  215 (335)
Q Consensus       162 ~~~i~~~~~~~~~~----~~~~~~~~v~~l~~~~G~~---v~~~~~~eHD~~~A~~s~lph  215 (335)
                      .+.++    ++.+.    ...+.++.+.+++...+.+   ++.++.-....++.++.+...
T Consensus       155 ~~riv----iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~  211 (402)
T 1dlj_A          155 PSRII----VSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYL  211 (402)
T ss_dssp             CSCEE----EECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHH
T ss_pred             CCEEE----EeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHH
Confidence            11122    23332    1224567788888764432   344444556667776655543

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.53  E-value=2.4e-14  Score=126.12  Aligned_cols=166  Identities=14%  Similarity=0.156  Sum_probs=115.0

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-CC-------CceecChhhHhhcCCCEEEEecCchhHH
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-LN-------APFFADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-~g-------~~~~~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      |||+||| +|.||+.++..|.+.|++|+++||+++..+...+ .+       +. ..++.+++ +++|+||+|+|...+.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~D~Vi~~~~~~~~~   78 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAA-EACDIAVLTIPWEHAI   78 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHH-HHCSEEEECSCHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHH-hcCCEEEEeCChhhHH
Confidence            6899999 9999999999999999999999999765543322 22       22 34566666 7899999999999988


Q ss_pred             HHHhhccccccCCccEEEEcCCCCc------------hHHHHHHhhCCCCCceEecc-ccCCCCCcccccCCCcceeccc
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLSVKE------------FPRNLFLKYLPQDFDILCTH-PMFGPESAKSSWENLPFMYDKV  169 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~SvK~------------~~~~~l~~~l~~~~~~v~~H-PmaG~~~~~~~~~g~~~i~~~~  169 (335)
                      +++.++. +.+ ++++|+|+++.-.            ...+.+.+.++. .+++.+| |+.+.........+...+++  
T Consensus        79 ~~~~~l~-~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~--  153 (212)
T 1jay_A           79 DTARDLK-NIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES-EKVVSALHTIPAARFANLDEKFDWDVPV--  153 (212)
T ss_dssp             HHHHHTH-HHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC-SCEEECCTTCCHHHHHCTTCCCCEEEEE--
T ss_pred             HHHHHHH-HHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC-CeEEEEccchHHHHhhCcCCCCCccEEE--
Confidence            9998884 456 4889999986322            225667776663 5677775 55544322100233333332  


Q ss_pred             ccCCChhHHHHHHHHHHHHHhc-CCEEEEeChHHHHHHHH
Q 044593          170 RIGNDEERIKRVDKFLDVFAKE-GCRMVEMSCFDHDKYAA  208 (335)
Q Consensus       170 ~~~~~~~~~~~~~~v~~l~~~~-G~~v~~~~~~eHD~~~A  208 (335)
                        +++  +.+.++.+.++|+.+ |.+++++++.....++.
T Consensus       154 --~g~--~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k  189 (212)
T 1jay_A          154 --CGD--DDESKKVVMSLISEIDGLRPLDAGPLSNSRLVE  189 (212)
T ss_dssp             --EES--CHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHH
T ss_pred             --ECC--cHHHHHHHHHHHHHcCCCCceeccchhHHHHhc
Confidence              222  246778899999999 99888887654433443

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.51  E-value=9.4e-14  Score=143.87  Aligned_cols=157  Identities=13%  Similarity=0.043  Sum_probs=113.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CC-------------CceecChhhH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LN-------------APFFADLNDL   84 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g-------------~~~~~~~~~~   84 (335)
                      ..++||+|||+|.||+.||..|.++|++|++||++++..+.+.+           .|             +..+++++ .
T Consensus       310 ~~~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~-~  388 (725)
T 2wtb_A          310 RKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYE-S  388 (725)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSG-G
T ss_pred             ccCcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHH-H
Confidence            34679999999999999999999999999999999876543321           23             22345664 4


Q ss_pred             hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                      + .+||+||.|+|.+.  ...++.++. +.++++++|++.+|+-  ....+.+.+....+|++.|++.++...      .
T Consensus       389 ~-~~aDlVIeaVpe~~~vk~~v~~~l~-~~~~~~~IlasntStl--~i~~la~~~~~p~~~iG~hf~~P~~~~------~  458 (725)
T 2wtb_A          389 F-RDVDMVIEAVIENISLKQQIFADLE-KYCPQHCILASNTSTI--DLNKIGERTKSQDRIVGAHFFSPAHIM------P  458 (725)
T ss_dssp             G-TTCSEEEECCCSCHHHHHHHHHHHH-HHSCTTCEEEECCSSS--CHHHHTTTCSCTTTEEEEEECSSTTTC------C
T ss_pred             H-CCCCEEEEcCcCCHHHHHHHHHHHH-hhCCCCcEEEeCCCCC--CHHHHHHHhcCCCCEEEecCCCCcccC------c
Confidence            5 79999999999886  457778874 5788999998876653  335566555444579999998744321      1


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeCh
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSC  200 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~  200 (335)
                      .+.+    +.++.++++.++.+.++++.+|..++++..
T Consensus       459 lvev----v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d  492 (725)
T 2wtb_A          459 LLEI----VRTNHTSAQVIVDLLDVGKKIKKTPVVVGN  492 (725)
T ss_dssp             EEEE----EECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             eEEE----EECCCCCHHHHHHHHHHHHHhCCEEEEECC
Confidence            1111    234444567889999999999999888763

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.49  E-value=9.7e-13  Score=123.09  Aligned_cols=169  Identities=11%  Similarity=0.151  Sum_probs=112.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce--------------ecChhhHhhcCCCEEEEec
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF--------------FADLNDLCELHPDVVLLST   96 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~--------------~~~~~~~~~~~aDvVIlav   96 (335)
                      .|||+|||+|.||+++|..|.++|++|++|+|++  .+..++.|+..              +++.++ + ..+|+||+||
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~-~~~D~vilav   77 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-I-GPMDLVLVGL   77 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-H-CCCSEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-c-CCCCEEEEec
Confidence            4799999999999999999999999999999986  35455555421              234444 4 6899999999


Q ss_pred             CchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc-cccc--CCC-cceecccccC
Q 044593           97 SILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA-KSSW--ENL-PFMYDKVRIG  172 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~-~~~~--~g~-~~i~~~~~~~  172 (335)
                      |...+.++++++. +.++++++|+.+...-. ..+.+.+.++.. +++++.+..+.... +...  .+. .+.+.    .
T Consensus        78 k~~~~~~~l~~l~-~~l~~~~~iv~l~nGi~-~~~~l~~~~~~~-~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig----~  150 (312)
T 3hn2_A           78 KTFANSRYEELIR-PLVEEGTQILTLQNGLG-NEEALATLFGAE-RIIGGVAFLCSNRGEPGEVHHLGAGRIILG----E  150 (312)
T ss_dssp             CGGGGGGHHHHHG-GGCCTTCEEEECCSSSS-HHHHHHHHTCGG-GEEEEEEEEECCBCSSSEEEECEEEEEEEE----E
T ss_pred             CCCCcHHHHHHHH-hhcCCCCEEEEecCCCC-cHHHHHHHCCCC-cEEEEEEEeeeEEcCCcEEEECCCCeEEEe----c
Confidence            9999999999995 78889999888754422 346677777743 44444332222221 1000  111 11111    0


Q ss_pred             CChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHh
Q 044593          173 NDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGS  210 (335)
Q Consensus       173 ~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~  210 (335)
                      .+....+..+.+.++|+..|.+++..+.-....+-.++
T Consensus       151 ~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~  188 (312)
T 3hn2_A          151 FLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLV  188 (312)
T ss_dssp             SSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHH
Confidence            11112346788899999999998877766666655543

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.48  E-value=7.7e-13  Score=124.99  Aligned_cols=171  Identities=15%  Similarity=0.160  Sum_probs=114.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-------------ecChhhHhhcCCCEEEEe
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-------------FADLNDLCELHPDVVLLS   95 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-------------~~~~~~~~~~~aDvVIla   95 (335)
                      |++|||+|||+|.||+.+|..|.++|++|++|+|+ +..+...+.|+..             +++.++ + .++|+||+|
T Consensus         1 M~~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~-~~~D~Vila   77 (335)
T 3ghy_A            1 MSLTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-L-GEQDVVIVA   77 (335)
T ss_dssp             -CCCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-H-CCCSEEEEC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-c-CCCCEEEEe
Confidence            34689999999999999999999999999999996 4455556666532             345555 3 789999999


Q ss_pred             cCchhHHHHHhhccccccCCccEEEEcCCCC------------------chHHHHHHhhCCCCCceEeccccCCCCCc-c
Q 044593           96 TSILSTQSVLKSIPFQRLKRSTLFVDVLSVK------------------EFPRNLFLKYLPQDFDILCTHPMFGPESA-K  156 (335)
Q Consensus        96 vp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK------------------~~~~~~l~~~l~~~~~~v~~HPmaG~~~~-~  156 (335)
                      ||...+.++++++. +.++++++|+.+.+.-                  ....+.+.+.+|.. +++++....|.... +
T Consensus        78 vk~~~~~~~~~~l~-~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~-~v~~gv~~~~a~~~~p  155 (335)
T 3ghy_A           78 VKAPALESVAAGIA-PLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTR-HVLGCVVHLTCATVSP  155 (335)
T ss_dssp             CCHHHHHHHHGGGS-SSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGG-GEEEEEECCCEEESST
T ss_pred             CCchhHHHHHHHHH-hhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcc-cEEEEEEEEEEEEcCC
Confidence            99999999999995 7889999999875441                  01224566667643 44444333332221 1


Q ss_pred             ----cccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593          157 ----SSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG  209 (335)
Q Consensus       157 ----~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~  209 (335)
                          ....+. +.+..    .+....+..+.+.++|+..|.+++..+.-....+..+
T Consensus       156 g~v~~~~~g~-~~iG~----~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl  207 (335)
T 3ghy_A          156 GHIRHGNGRR-LILGE----PAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKL  207 (335)
T ss_dssp             TEEEECSCCE-EEEEC----TTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHH
T ss_pred             cEEEECCCCe-EEEec----CCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHH
Confidence                100111 12210    1111235678889999999999888777676655553

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.48  E-value=1.3e-13  Score=128.46  Aligned_cols=174  Identities=14%  Similarity=0.135  Sum_probs=116.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc-----C-CeEEEEcCCCCcHHHHHh-CCCceec-------------ChhhHhhcCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH-----H-HTLLVHSRSDHSPAVRQQ-LNAPFFA-------------DLNDLCELHP   89 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~-----G-~~V~~~dr~~~~~~~a~~-~g~~~~~-------------~~~~~~~~~a   89 (335)
                      ++|||+|||+|.||+.+|..|.++     | ++|++|+| ++..+...+ .|+....             +..+.+ .++
T Consensus         7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~   84 (317)
T 2qyt_A            7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEV-GTV   84 (317)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHH-CCE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCcccc-CCC
Confidence            347999999999999999999999     9 99999999 555555555 6764321             223344 789


Q ss_pred             CEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc-c----cccCCCcc
Q 044593           90 DVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA-K----SSWENLPF  164 (335)
Q Consensus        90 DvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~-~----~~~~g~~~  164 (335)
                      |+||+|||...+.++++++. +.++++++|+++...- ...+.+.+.++.. +++.+.|..+.... +    ....|...
T Consensus        85 D~vil~vk~~~~~~v~~~i~-~~l~~~~~iv~~~nG~-~~~~~l~~~l~~~-~v~~g~~~~~a~~~~pg~~~~~~~g~~~  161 (317)
T 2qyt_A           85 DYILFCTKDYDMERGVAEIR-PMIGQNTKILPLLNGA-DIAERMRTYLPDT-VVWKGCVYISARKSAPGLITLEADRELF  161 (317)
T ss_dssp             EEEEECCSSSCHHHHHHHHG-GGEEEEEEEEECSCSS-SHHHHHTTTSCTT-TBCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEecCcccHHHHHHHHH-hhcCCCCEEEEccCCC-CcHHHHHHHCCCC-cEEEEEEEEEEEEcCCCEEEEcCCCceE
Confidence            99999999999999999985 6788889999975442 2336677777643 34444444333321 0    00122221


Q ss_pred             eecccccCC-ChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhh
Q 044593          165 MYDKVRIGN-DEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       165 i~~~~~~~~-~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~l  213 (335)
                      ++.    .. ++...+.+ .+.++|+..|.++++.+.-....+..++...
T Consensus       162 ~ig----~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~  206 (317)
T 2qyt_A          162 YFG----SGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMIS  206 (317)
T ss_dssp             EEE----CCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHH
T ss_pred             EEc----CCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHH
Confidence            121    11 22224456 7899999999988887766666666665544

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.48  E-value=6.5e-14  Score=128.70  Aligned_cols=164  Identities=13%  Similarity=0.106  Sum_probs=108.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC---CC----c-eecChhhHhhcCCCEEEEecCchhHHH
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL---NA----P-FFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~---g~----~-~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      |||+|||+|.||+.+|..|.++|++|++|||+++..+.....   |.    . ..++ .+.+ .++|+||+|+|...+.+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~-~~~d~vi~~v~~~~~~~   78 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFL-ATSDLLLVTLKAWQVSD   78 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHH-HTCSEEEECSCGGGHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-cccc-CCCCEEEEEecHHhHHH
Confidence            689999999999999999999999999999998654322221   21    0 1233 3444 68999999999999999


Q ss_pred             HHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEecccc-----CCCCCcccccCCCcceecccccCCChhHH
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPM-----FGPESAKSSWENLPFMYDKVRIGNDEERI  178 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPm-----aG~~~~~~~~~g~~~i~~~~~~~~~~~~~  178 (335)
                      +++++. +.++++++|+++.+.- ...+.+.+.++.   ++.++++     .|| .......|. ..+..    .+ .+.
T Consensus        79 v~~~l~-~~l~~~~~vv~~~~g~-~~~~~l~~~~~~---~~~g~~~~~~~~~~p-~~~~~~~g~-~~i~~----~~-~~~  146 (291)
T 1ks9_A           79 AVKSLA-STLPVTTPILLIHNGM-GTIEELQNIQQP---LLMGTTTHAARRDGN-VIIHVANGI-THIGP----AR-QQD  146 (291)
T ss_dssp             HHHHHH-TTSCTTSCEEEECSSS-CTTGGGTTCCSC---EEEEEECCEEEEETT-EEEEEECCC-EEEEE----SS-GGG
T ss_pred             HHHHHH-hhCCCCCEEEEecCCC-CcHHHHHHhcCC---eEEEEEeEccEEcCC-EEEEecccc-eEEcc----CC-CCc
Confidence            999985 6788899999875432 222345555543   5545553     344 211222443 23321    11 123


Q ss_pred             HHHHHHHHHHHhcCCEEEEeChHHHHHHHHH
Q 044593          179 KRVDKFLDVFAKEGCRMVEMSCFDHDKYAAG  209 (335)
Q Consensus       179 ~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~  209 (335)
                      +..+.++++|+..|.++++.+.-....+..+
T Consensus       147 ~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl  177 (291)
T 1ks9_A          147 GDYSYLADILQTVLPDVAWHNNIRAELWRKL  177 (291)
T ss_dssp             TTCTHHHHHHHTTSSCEEECTTHHHHHHHHH
T ss_pred             chHHHHHHHHHhcCCCCeecHHHHHHHHHHH
Confidence            4567888999999998888876555554443

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.48  E-value=6.3e-13  Score=125.48  Aligned_cols=154  Identities=12%  Similarity=0.228  Sum_probs=104.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCC-----------CceecChhhHhhcCCCEEEEecCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN-----------APFFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g-----------~~~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      ..|||+|||+|.||+.+|..|.++|++|++|+|+++..+...+.|           +..++++.+ + .++|+||+|||.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~-~~aDvVil~vk~   90 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-I-KKEDILVIAIPV   90 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-C-CTTEEEEECSCG
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-h-cCCCEEEEECCH
Confidence            468999999999999999999999999999999987665455444           345567777 6 789999999999


Q ss_pred             hhHHHHHhhccccccCCccEEEEcC-CCCc----hHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVL-SVKE----FPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGN  173 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~-SvK~----~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~  173 (335)
                      ..+.+++.++. +   ++++|++++ ++..    .+.+.+.+.++ ....+..    ||........|.+..+.   +++
T Consensus        91 ~~~~~v~~~l~-~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~----~P~~~~~~~~g~~~~~~---~g~  158 (335)
T 1z82_A           91 QYIREHLLRLP-V---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLS----GPSHAEEVAKKLPTAVT---LAG  158 (335)
T ss_dssp             GGHHHHHTTCS-S---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEE----SSCCHHHHHTTCCEEEE---EEE
T ss_pred             HHHHHHHHHhC-c---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEE----CCccHHHHhCCCceEEE---EEe
Confidence            99999999885 3   788999987 3322    23344444443 1112222    33322111234433322   122


Q ss_pred             ChhHHHHHHHHHHHHHhcCCEEEEeChHH
Q 044593          174 DEERIKRVDKFLDVFAKEGCRMVEMSCFD  202 (335)
Q Consensus       174 ~~~~~~~~~~v~~l~~~~G~~v~~~~~~e  202 (335)
                      +  +   .+.++++|+..|.+++..+.-.
T Consensus       159 ~--~---~~~~~~ll~~~g~~~~~~~di~  182 (335)
T 1z82_A          159 E--N---SKELQKRISTEYFRVYTCEDVV  182 (335)
T ss_dssp             T--T---HHHHHHHHCCSSEEEEEESCHH
T ss_pred             h--h---HHHHHHHhCCCCEEEEecCchH
Confidence            2  1   5778899999998877766443

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.47  E-value=5e-13  Score=132.24  Aligned_cols=174  Identities=14%  Similarity=0.145  Sum_probs=112.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-------C-------------CceecChhhHhhcCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-------N-------------APFFADLNDLCELHP   89 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-------g-------------~~~~~~~~~~~~~~a   89 (335)
                      ..|||+|||+|.||..+|..|+++|++|++||++++..+...+.       |             +..++++.+.+ .+|
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~-~~a   85 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAV-AHG   85 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHH-HHC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHh-hcC
Confidence            46899999999999999999999999999999998777655443       2             23455666666 789


Q ss_pred             CEEEEecCc----------hhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC----CC---Cc-eEeccccCC
Q 044593           90 DVVLLSTSI----------LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP----QD---FD-ILCTHPMFG  151 (335)
Q Consensus        90 DvVIlavp~----------~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~----~~---~~-~v~~HPmaG  151 (335)
                      |+||+|||.          ..+.++++++. +.++++++|++.+++.....+.+.+.+.    .+   .. .+    .++
T Consensus        86 DvviiaVptp~~~~~~~dl~~v~~v~~~i~-~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~~v----~~~  160 (478)
T 2y0c_A           86 DVQFIAVGTPPDEDGSADLQYVLAAARNIG-RYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSV----VSN  160 (478)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHH-HHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEE----EEC
T ss_pred             CEEEEEeCCCcccCCCccHHHHHHHHHHHH-HhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCCccEEE----EEC
Confidence            999999998          67899999885 6789999999988764433333332221    11   12 22    334


Q ss_pred             CCCcccccC----CCc-ceecccccCCChh--HHHHHHHHHHHHHhcCC--EEEEeChHHHHHHHHHhhhh
Q 044593          152 PESAKSSWE----NLP-FMYDKVRIGNDEE--RIKRVDKFLDVFAKEGC--RMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       152 ~~~~~~~~~----g~~-~i~~~~~~~~~~~--~~~~~~~v~~l~~~~G~--~v~~~~~~eHD~~~A~~s~l  213 (335)
                      |+...++-.    +.+ .++    ++.+..  ..+..+.++++++.++.  .++.++.-.-..++.++.+.
T Consensus       161 Pe~~~eG~~~~~~~~p~~iv----iG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~  227 (478)
T 2y0c_A          161 PEFLKEGAAVDDFTRPDRIV----IGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANA  227 (478)
T ss_dssp             CCCCCTTCHHHHHHSCSCEE----EECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHH
T ss_pred             hhhhcccceeeccCCCCEEE----EEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHH
Confidence            444321111    111 122    233211  11567888899988763  35555444445566665544

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.46  E-value=1.1e-12  Score=123.16  Aligned_cols=165  Identities=17%  Similarity=0.203  Sum_probs=113.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc-------------eecChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP-------------FFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~-------------~~~~~~~~~~~~aDvVIlav   96 (335)
                      ..|||+|||+|.||+.+|..|.++|++|++| ++++..+...+.|+.             .+++.++ + .++|+||+||
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~-~~~D~vilav   94 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-V-QGADLVLFCV   94 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-G-TTCSEEEECC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-c-CCCCEEEEEc
Confidence            4689999999999999999999999999999 877666655554432             2345544 4 6899999999


Q ss_pred             CchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccc-----cCCCCCcccccCCCcceeccccc
Q 044593           97 SILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP-----MFGPESAKSSWENLPFMYDKVRI  171 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HP-----maG~~~~~~~~~g~~~i~~~~~~  171 (335)
                      |...+.++++++. +.++++++|+.+.+.-. ..+.+.+.++  .+++++..     +.||........|.+.      +
T Consensus        95 k~~~~~~~l~~l~-~~l~~~~~iv~~~nGi~-~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g~~~------i  164 (318)
T 3hwr_A           95 KSTDTQSAALAMK-PALAKSALVLSLQNGVE-NADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRGELV------I  164 (318)
T ss_dssp             CGGGHHHHHHHHT-TTSCTTCEEEEECSSSS-HHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEEEEE------E
T ss_pred             ccccHHHHHHHHH-HhcCCCCEEEEeCCCCC-cHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCceEE------E
Confidence            9999999999995 68889999888754432 3367777776  23444322     2234332111123221      2


Q ss_pred             CCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhh
Q 044593          172 GNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQ  211 (335)
Q Consensus       172 ~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s  211 (335)
                      +.+    +..+.++++|...|.+++..+.-....+..++.
T Consensus       165 g~~----~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~  200 (318)
T 3hwr_A          165 EPT----SHGANLAAIFAAAGVPVETSDNVRGALWAKLIL  200 (318)
T ss_dssp             CCC----TTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHH
T ss_pred             cCC----HHHHHHHHHHHhCCCCcEechHHHHHHHHHHHH
Confidence            332    234678899999999988877666666655543

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.17  E-value=7.1e-15  Score=129.39  Aligned_cols=164  Identities=13%  Similarity=0.191  Sum_probs=112.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      .+.|||+|||+|.||+.++..|.+.|++|++|||+++ .+.....|+... +..+++ .++|+||+|+|...+..++ ++
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~-~~aDvVilav~~~~~~~v~-~l   92 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAA-SRSDVIVLAVHREHYDFLA-EL   92 (201)
Confidence            3568999999999999999999999999999999976 333334465544 566666 7899999999998887777 45


Q ss_pred             cccccCCccEEEEcCCCCc------hHHHHHHhhCCCCCceEeccccCCCCCcccc-cCCCc-ceecccccCCChhHHHH
Q 044593          109 PFQRLKRSTLFVDVLSVKE------FPRNLFLKYLPQDFDILCTHPMFGPESAKSS-WENLP-FMYDKVRIGNDEERIKR  180 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~SvK~------~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~-~~g~~-~i~~~~~~~~~~~~~~~  180 (335)
                      . + +.++++|+|+++...      ...+.+++.++. .+++.+.|..+......+ ..+.. .++    ++.   +.+.
T Consensus        93 ~-~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~g~~~~~~----~g~---~~~~  162 (201)
T 2yjz_A           93 A-D-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLDASRQVFV----CGN---DSKA  162 (201)
Confidence            3 2 457889999976542      113455555553 356666666665543211 11211 222    222   2456


Q ss_pred             HHHHHHHHHhcCCEEEEeChHHHHHH
Q 044593          181 VDKFLDVFAKEGCRMVEMSCFDHDKY  206 (335)
Q Consensus       181 ~~~v~~l~~~~G~~v~~~~~~eHD~~  206 (335)
                      .+.++++|+.+|.+++.+.+-...+.
T Consensus       163 ~~~v~~ll~~~G~~~~~~G~l~~a~~  188 (201)
T 2yjz_A          163 KDRVMDIARTLGLTPLDQGSLVAAKE  188 (201)
Confidence            78899999999999988876544433

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.44  E-value=1.3e-12  Score=128.81  Aligned_cols=178  Identities=13%  Similarity=0.024  Sum_probs=117.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CC-eEEEEcCCCC----cHHHHHh---------------------CC-CceecC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HH-TLLVHSRSDH----SPAVRQQ---------------------LN-APFFAD   80 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~-~V~~~dr~~~----~~~~a~~---------------------~g-~~~~~~   80 (335)
                      +..|||+|||+|.||..+|..|+++ |+ +|++||++++    ..+...+                     .| +..+++
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd   95 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD   95 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc
Confidence            4678999999999999999999999 99 9999999998    6553332                     12 233455


Q ss_pred             hhhHhhcCCCEEEEecCchh------------HHHHHhhccccccCCccEEEEcCCCCchHHHHHH-----hhCCC--CC
Q 044593           81 LNDLCELHPDVVLLSTSILS------------TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFL-----KYLPQ--DF  141 (335)
Q Consensus        81 ~~~~~~~~aDvVIlavp~~~------------~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~-----~~l~~--~~  141 (335)
                       .+.+ .+||+||+|||...            +..+.+.+. +.++++++|++.+++.....+.+.     +..+.  +.
T Consensus        96 -~ea~-~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~-~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~  172 (478)
T 3g79_A           96 -FSRI-SELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVG-KYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGE  172 (478)
T ss_dssp             -GGGG-GGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHH-HHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTT
T ss_pred             -HHHH-hcCCEEEEecCCchhccCCccccHHHHHHHHHHHH-hhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCC
Confidence             4555 78999999998763            566677775 678899999999877543332222     22221  11


Q ss_pred             -ceEeccccCCCCCcc-cccCCCcceecccccCCChhHHHHHHHHHHHHHhc-CCEEEEeChHHHHHHHHHhhhhHHH
Q 044593          142 -DILCTHPMFGPESAK-SSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKE-GCRMVEMSCFDHDKYAAGSQFVTHT  216 (335)
Q Consensus       142 -~~v~~HPmaG~~~~~-~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~-G~~v~~~~~~eHD~~~A~~s~lph~  216 (335)
                       ..+...|.++.+... ..+...+.++    .+.+   .+..+.++++++.+ +.+++.++...-.+++.++.+.-..
T Consensus       173 d~~v~~~Pe~~~~G~a~~~~~~~~~Iv----~G~~---~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a  243 (478)
T 3g79_A          173 DFALAHAPERVMVGRLLKNIREHDRIV----GGID---EASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRD  243 (478)
T ss_dssp             TBEEEECCCCCCTTSHHHHHHHSCEEE----EESS---HHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHH
T ss_pred             ceeEEeCCccCCccchhhhhcCCcEEE----EeCC---HHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHH
Confidence             134445666544321 0000111222    2333   34568899999999 7777777666667777776655443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.43  E-value=3.8e-12  Score=119.43  Aligned_cols=172  Identities=19%  Similarity=0.261  Sum_probs=113.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCC---------------ceecChhhHhhcCCCEEEEe
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNA---------------PFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~---------------~~~~~~~~~~~~~aDvVIla   95 (335)
                      .|||+|||+|.||+++|..|.++|++|++|+|++.  +..++.|+               ..+++.+++. ..+|+||+|
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~-~~~DlVila   78 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELE-TKPDCTLLC   78 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHHHCEEEEETTTCCEEECCSCEESCGGGCS-SCCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcC-CCCCEEEEe
Confidence            47999999999999999999999999999999872  43444343               1234555554 489999999


Q ss_pred             cCchhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc-c-cccCCCcceecccccCC
Q 044593           96 TSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA-K-SSWENLPFMYDKVRIGN  173 (335)
Q Consensus        96 vp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~-~-~~~~g~~~i~~~~~~~~  173 (335)
                      ||...+.++++++. +.++++++|+.+...-. ..+.+.+.++.. .++++-..+|.... + ......+..   .+++.
T Consensus        79 vK~~~~~~~l~~l~-~~l~~~t~Iv~~~nGi~-~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~~~---~~ig~  152 (320)
T 3i83_A           79 IKVVEGADRVGLLR-DAVAPDTGIVLISNGID-IEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQAYGR---LMLGN  152 (320)
T ss_dssp             CCCCTTCCHHHHHT-TSCCTTCEEEEECSSSS-CSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEEEEE---EEEEE
T ss_pred             cCCCChHHHHHHHH-hhcCCCCEEEEeCCCCC-hHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECCCCE---EEEec
Confidence            99999999999995 67888888887654322 126677777753 45554434432221 0 100110100   01211


Q ss_pred             -ChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhh
Q 044593          174 -DEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQ  211 (335)
Q Consensus       174 -~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s  211 (335)
                       +....+..+.+.++|+..|.+++..+.-....+-.++-
T Consensus       153 ~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~  191 (320)
T 3i83_A          153 YPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVW  191 (320)
T ss_dssp             SSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHH
Confidence             11123467888999999999988887666666555433

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.36  E-value=1e-12  Score=123.22  Aligned_cols=138  Identities=15%  Similarity=0.239  Sum_probs=99.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||+++|+.++..|++|++||++++... +.+.|+.. .++++++ .++|+|++++|... +..++.
T Consensus       139 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~g~~~-~~l~ell-~~aDvVvl~~P~~~~t~~li~  215 (313)
T 2ekl_A          139 ELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AEKINAKA-VSLEELL-KNSDVISLHVTVSKDAKPIID  215 (313)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HHHTTCEE-CCHHHHH-HHCSEEEECCCCCTTSCCSBC
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HHhcCcee-cCHHHHH-hhCCEEEEeccCChHHHHhhC
Confidence            45688999999999999999999999999999999987653 66778764 4778887 78999999999754 433332


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCCC------CceEeccccCCCCCcccccCCCcceecccc
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD------FDILCTHPMFGPESAKSSWENLPFMYDKVR  170 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~------~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~  170 (335)
                       .. ...++++++++|+++......+.+.+.+..+      ..++..||+.... ....|...+++++|..
T Consensus       216 ~~~-l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~-~~~L~~~~nviltPH~  284 (313)
T 2ekl_A          216 YPQ-FELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEW-ELELLKHERVIVTTHI  284 (313)
T ss_dssp             HHH-HHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHH-HHHHHHSTTEEECCSC
T ss_pred             HHH-HhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcc-cchHhhCCCEEECCcc
Confidence             22 1357899999999886544434555544332      3577889987210 0135666677887754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.36  E-value=3.1e-12  Score=121.14  Aligned_cols=125  Identities=16%  Similarity=0.149  Sum_probs=90.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-CC--------------ceecChhhHhhcCCCEEE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-NA--------------PFFADLNDLCELHPDVVL   93 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-g~--------------~~~~~~~~~~~~~aDvVI   93 (335)
                      |+.|||+|||+|.||+.+|..|.+.|++|++|||+++..+...+. ++              ..++++.+++ .++|+||
T Consensus         2 m~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi   80 (359)
T 1bg6_A            2 IESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-KDADVIL   80 (359)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-TTCSEEE
T ss_pred             CCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH-hcCCEEE
Confidence            345899999999999999999999999999999998766544443 32              2345676766 7899999


Q ss_pred             EecCchhHHHHHhhccccccCCccEEEEcCC-CCchH--HHHHHhhCCCCCce--EeccccCCCCCc
Q 044593           94 LSTSILSTQSVLKSIPFQRLKRSTLFVDVLS-VKEFP--RNLFLKYLPQDFDI--LCTHPMFGPESA  155 (335)
Q Consensus        94 lavp~~~~~~vl~~l~~~~l~~~~iVvd~~S-vK~~~--~~~l~~~l~~~~~~--v~~HPmaG~~~~  155 (335)
                      +|+|.....++++++. +.++++++|+++.+ .+...  .+.+.+..+..+.|  ++.||+++...+
T Consensus        81 ~~v~~~~~~~~~~~l~-~~l~~~~~vv~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~g  146 (359)
T 1bg6_A           81 IVVPAIHHASIAANIA-SYISEGQLIILNPGATGGALEFRKILRENGAPEVTIGETSSMLFTCRSER  146 (359)
T ss_dssp             ECSCGGGHHHHHHHHG-GGCCTTCEEEESSCCSSHHHHHHHHHHHTTCCCCEEEEESSCSEEEECSS
T ss_pred             EeCCchHHHHHHHHHH-HhCCCCCEEEEcCCCchHHHHHHHHHHhcCCCCeEEEEecCCcEEEEeCC
Confidence            9999999999999885 67889999998855 43321  12233321122335  357898875443

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.35  E-value=3.4e-12  Score=121.34  Aligned_cols=141  Identities=18%  Similarity=0.268  Sum_probs=100.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.++..|++|++|||++...+.+.+.|+....++++++ ++||+|++++|.. .+..++.
T Consensus       161 ~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell-~~aDvV~l~~Plt~~t~~li~  239 (351)
T 3jtm_A          161 DLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEML-PKCDVIVINMPLTEKTRGMFN  239 (351)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHG-GGCSEEEECSCCCTTTTTCBS
T ss_pred             cccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHH-hcCCEEEECCCCCHHHHHhhc
Confidence            4578999999999999999999999999999999998766667777887777899988 8999999999964 3444432


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcc---cccCCCcceecccc
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAK---SSWENLPFMYDKVR  170 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~---~~~~g~~~i~~~~~  170 (335)
                       +. ...++++++++|++..+....+.+.+.+..+.-.-.+..++.+|..+   ..|.-..++++|.+
T Consensus       240 ~~~-l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHi  306 (351)
T 3jtm_A          240 KEL-IGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHT  306 (351)
T ss_dssp             HHH-HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSC
T ss_pred             HHH-HhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcC
Confidence             22 24578999999998776555566655554332222345666655421   23333345666653

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.35  E-value=2.5e-12  Score=120.25  Aligned_cols=136  Identities=18%  Similarity=0.265  Sum_probs=97.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|+|||+|.||+++|+.++..|++|++||++++. +.+.+.|+.. .++++++ .++|+|++++|... +..++.
T Consensus       139 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell-~~aDvV~l~~p~~~~t~~li~  215 (307)
T 1wwk_A          139 ELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKF-VDLETLL-KESDVVTIHVPLVESTYHLIN  215 (307)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEE-CCHHHHH-HHCSEEEECCCCSTTTTTCBC
T ss_pred             ccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCccc-cCHHHHH-hhCCEEEEecCCChHHhhhcC
Confidence            456889999999999999999999999999999999876 4466778754 3777887 78999999999764 444442


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCC------CCceEeccccCCCCCcccccCCCcceecccc
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ------DFDILCTHPMFGPESAKSSWENLPFMYDKVR  170 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~------~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~  170 (335)
                       +. ...++++++++|+++........+.+.+..      ...+...||+....   ..|....++++|..
T Consensus       216 ~~~-l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~---~L~~~~nviltPh~  282 (307)
T 1wwk_A          216 EER-LKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDH---PLTKFDNVVLTPHI  282 (307)
T ss_dssp             HHH-HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTC---GGGGCTTEEECSSC
T ss_pred             HHH-HhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCC---hHHhCCCEEECCcc
Confidence             22 135789999999988643333333333321      22466778873322   45666777887754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.35  E-value=5.7e-12  Score=117.73  Aligned_cols=171  Identities=13%  Similarity=0.086  Sum_probs=108.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecCh----------hhHhhcCCCEEEEecCchh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADL----------NDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~----------~~~~~~~aDvVIlavp~~~  100 (335)
                      .|||+|||+|.||+.+|..|. +|++|++++|+++..+..++.|+....+.          .+.. ..+|+||+|||...
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~-~~~D~vilavK~~~   79 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSIN-SDFDLLVVTVKQHQ   79 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCC-SCCSEEEECCCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeeccccccccccc-CCCCEEEEEeCHHH
Confidence            489999999999999999999 99999999999876655565666432110          2233 68999999999999


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc-ccc--cCCC-cceecccccCCChh
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA-KSS--WENL-PFMYDKVRIGNDEE  176 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~-~~~--~~g~-~~i~~~~~~~~~~~  176 (335)
                      +.++++++. + +.+++ |+.+...- ...+.+.+.++.. +++++-...|.... +..  ..+. ...+..  ...+  
T Consensus        80 ~~~~l~~l~-~-~~~~~-ivs~~nGi-~~~e~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~--~~~~--  150 (307)
T 3ego_A           80 LQSVFSSLE-R-IGKTN-ILFLQNGM-GHIHDLKDWHVGH-SIYVGIVEHGAVRKSDTAVDHTGLGAIKWSA--FDDA--  150 (307)
T ss_dssp             HHHHHHHTT-S-SCCCE-EEECCSSS-HHHHHHHTCCCSC-EEEEEEECCEEEECSSSEEEEEECCCEEEEE--CTTC--
T ss_pred             HHHHHHHhh-c-CCCCe-EEEecCCc-cHHHHHHHhCCCC-cEEEEEEeeceEECCCCEEEEeeeeeEEEEe--CCCC--
Confidence            999999995 4 45666 66654332 2335677766643 45554444433321 100  0111 112211  1111  


Q ss_pred             HHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhh
Q 044593          177 RIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       177 ~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~l  213 (335)
                       .+.++.+.++|...|..+.+.+.-....+-.++-..
T Consensus       151 -~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~  186 (307)
T 3ego_A          151 -EPDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNA  186 (307)
T ss_dssp             -CGGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhh
Confidence             123445566677778888777776777766654443

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.34  E-value=3e-12  Score=121.80  Aligned_cols=140  Identities=14%  Similarity=0.139  Sum_probs=100.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHH-HcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFA-RHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL  105 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~-~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl  105 (335)
                      ...+++|||||+|.||..+|+.++ ..|++|++||+++...+.+.+.|+....++++++ .++|+|++|+|... +..++
T Consensus       160 ~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~aDvVil~vp~~~~t~~li  238 (348)
T 2w2k_A          160 NPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELA-RRSDCVSVSVPYMKLTHHLI  238 (348)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHH-HHCSEEEECCCCSGGGTTCB
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHh-ccCCEEEEeCCCChHHHHHh
Confidence            456789999999999999999999 9999999999998766556666776656788877 78999999999864 44444


Q ss_pred             h-hccccccCCccEEEEcCCCCchHHHHHHhhCCCCC-ceEeccccCCCCC--cccccCCCcceecccc
Q 044593          106 K-SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDF-DILCTHPMFGPES--AKSSWENLPFMYDKVR  170 (335)
Q Consensus       106 ~-~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~-~~v~~HPmaG~~~--~~~~~~g~~~i~~~~~  170 (335)
                      . ++ ...++++++|+|+++.+....+.+.+.+..+. ...+ .-.+++|.  ....|....++++|.+
T Consensus       239 ~~~~-l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gag-lDv~~~EP~~~~~L~~~~nviltPH~  305 (348)
T 2w2k_A          239 DEAF-FAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAG-LDVHEFEPQVSKELIEMKHVTLTTHI  305 (348)
T ss_dssp             CHHH-HHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEE-ESSCTTTTSCCHHHHTSSSEEECCSC
T ss_pred             hHHH-HhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEE-eccCCCCCCCCchhhcCCCEEEcCcC
Confidence            2 22 13578999999999887665566666665432 1122 34566542  1234555566766643

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.33  E-value=1.9e-12  Score=121.76  Aligned_cols=136  Identities=17%  Similarity=0.214  Sum_probs=96.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcC-CCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSR-SDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL  105 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr-~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl  105 (335)
                      ...+++|||||+|.||+++|+.++..|++|++||+ +++.. .+.+.|+....++++++ .++|+|++++|... +..++
T Consensus       143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell-~~aDvVil~~p~~~~t~~~i  220 (320)
T 1gdh_A          143 KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQATFHDSLDSLL-SVSQFFSLNAPSTPETRYFF  220 (320)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHTCEECSSHHHHH-HHCSEEEECCCCCTTTTTCB
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcCcEEcCCHHHHH-hhCCEEEEeccCchHHHhhc
Confidence            45688999999999999999999999999999999 87653 45566776655788887 78999999999763 44444


Q ss_pred             hh-ccccccCCccEEEEcCCCCchHHHHHHhhCCCC------CceEeccccCCCCCcccccCCCcceecccc
Q 044593          106 KS-IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD------FDILCTHPMFGPESAKSSWENLPFMYDKVR  170 (335)
Q Consensus       106 ~~-l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~------~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~  170 (335)
                      .. . ...++++++++|+++......+.+.+.+..+      ..+...+|   +. ....|...+++++|..
T Consensus       221 ~~~~-l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP---~~-~~~L~~~~nviltPH~  287 (320)
T 1gdh_A          221 NKAT-IKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP---NI-NEGYYDLPNTFLFPHI  287 (320)
T ss_dssp             SHHH-HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT---SC-CTTGGGCTTEEECSSC
T ss_pred             CHHH-HhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC---CC-CChhhhCCCEEECCcC
Confidence            22 2 2457899999999886433334444433222      23455577   22 1246677778887754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.33  E-value=1.7e-11  Score=119.54  Aligned_cols=178  Identities=14%  Similarity=0.040  Sum_probs=115.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-ecChhhH---------------hhcCCCEEE
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-FADLNDL---------------CELHPDVVL   93 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-~~~~~~~---------------~~~~aDvVI   93 (335)
                      .+.|..|||+|.||..+|..|.++||+|++||++++..+...+-+... ...++++               . ++||+||
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~-~~aDvvi   88 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTP-EASDVFI   88 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSC-CCCSEEE
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCch-hhCCEEE
Confidence            357899999999999999999999999999999998776554422111 0111111               2 5799999


Q ss_pred             EecCchh------------HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhh----CCC--CC-ceEeccccCCCCC
Q 044593           94 LSTSILS------------TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKY----LPQ--DF-DILCTHPMFGPES  154 (335)
Q Consensus        94 lavp~~~------------~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~----l~~--~~-~~v~~HPmaG~~~  154 (335)
                      +|||...            +..+.+.+. +.++++++|++.+++.....+.+.+.    .+.  +. .++...|-+..+.
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~-~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G  167 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSIL-PFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPG  167 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHG-GGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCCTT
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHH-HhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCCCc
Confidence            9999865            567777885 67899999999998876665554332    221  11 1344456555442


Q ss_pred             cc-cccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHH
Q 044593          155 AK-SSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHT  216 (335)
Q Consensus       155 ~~-~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~  216 (335)
                      .. ..+...+.++    .+.+   ++..+.++++++.++..++.++...-.+++.++.+.-..
T Consensus       168 ~A~~~~~~p~~Iv----~G~~---~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a  223 (431)
T 3ojo_A          168 KILEELVHNNRII----GGVT---KACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRD  223 (431)
T ss_dssp             SHHHHHHHSCEEE----EESS---HHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHH
T ss_pred             chhhcccCCCEEE----EeCC---HHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHH
Confidence            11 0001111222    2333   467789999999998765555555667777777665543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.32  E-value=5e-12  Score=119.51  Aligned_cols=135  Identities=13%  Similarity=0.186  Sum_probs=98.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||+++|+.++..|++|++||+++... .+.+.|+.. .++++++ +++|+|++++|... +..++.
T Consensus       162 ~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell-~~aDvV~l~~P~t~~t~~li~  238 (335)
T 2g76_A          162 ELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSASFGVQQ-LPLEEIW-PLCDFITVHTPLLPSTTGLLN  238 (335)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHHHTTCEE-CCHHHHG-GGCSEEEECCCCCTTTTTSBC
T ss_pred             CCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhhhcCcee-CCHHHHH-hcCCEEEEecCCCHHHHHhhC
Confidence            4578899999999999999999999999999999987653 466778754 4788887 79999999999874 455542


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCCC------CceEeccccCCCCCcccccCCCcceecccc
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD------FDILCTHPMFGPESAKSSWENLPFMYDKVR  170 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~------~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~  170 (335)
                       +. ...++++++++|+++......+.+.+.+..+      ..++..||+..    ...|....++++|..
T Consensus       239 ~~~-l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~----~~L~~~~nvilTPH~  304 (335)
T 2g76_A          239 DNT-FAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRD----RALVDHENVISCPHL  304 (335)
T ss_dssp             HHH-HTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSC----CHHHHSTTEEECSSC
T ss_pred             HHH-HhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCC----chHHhCCCEEECCcC
Confidence             22 2457899999999887544334444444321      24677888532    235666677887754

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.32  E-value=5.4e-12  Score=121.55  Aligned_cols=138  Identities=17%  Similarity=0.175  Sum_probs=98.1

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.++..|++|++||+++...+.+.+.|+....++++++ .++|+|++++|.. .+..++.
T Consensus       188 ~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell-~~aDvV~l~~Plt~~t~~li~  266 (393)
T 2nac_A          188 DLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMY-PVCDVVTLNCPLHPETEHMIN  266 (393)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHG-GGCSEEEECSCCCTTTTTCBS
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHH-hcCCEEEEecCCchHHHHHhh
Confidence            4578899999999999999999999999999999998766656667877656788888 8999999999975 3444552


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCCC------CceEeccccCCCCCcccccCCCcceecccc
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD------FDILCTHPMFGPESAKSSWENLPFMYDKVR  170 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~------~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~  170 (335)
                       +. ...++++++++|++.......+.+.+.+..+      ..+...+|+...+   ..|....++++|.+
T Consensus       267 ~~~-l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~---pL~~~~nvilTPHi  333 (393)
T 2nac_A          267 DET-LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDH---PWRTMPYNGMTPHI  333 (393)
T ss_dssp             HHH-HTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTC---GGGTSTTBCCCCSC
T ss_pred             HHH-HhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCC---hhHcCCCEEECCCC
Confidence             22 2457899999999876543334455544332      1234445653211   34555566777654

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.31  E-value=1.3e-11  Score=127.70  Aligned_cols=158  Identities=13%  Similarity=0.134  Sum_probs=118.8

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC----------------------CCceecChhhH
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL----------------------NAPFFADLNDL   84 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~----------------------g~~~~~~~~~~   84 (335)
                      +.+...||+|||+|.||+.||..++.+|++|+++|++++..+.+.+.                      .+..+++.+++
T Consensus       312 ~~~~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  391 (742)
T 3zwc_A          312 SAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKEL  391 (742)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGG
T ss_pred             CcccccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHH
Confidence            34567899999999999999999999999999999998754432210                      11234555555


Q ss_pred             hhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCC
Q 044593           85 CELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENL  162 (335)
Q Consensus        85 ~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~  162 (335)
                        .+||+||-|+|.+.  ..+++.++. ..+++++++...+|+  ..+..+.+.....-+|++.|+...+..-       
T Consensus       392 --~~aDlVIEAV~E~l~iK~~vf~~le-~~~~~~aIlASNTSs--l~i~~ia~~~~~p~r~ig~HFfnP~~~m-------  459 (742)
T 3zwc_A          392 --STVDLVVEAVFEDMNLKKKVFAELS-ALCKPGAFLCTNTSA--LNVDDIASSTDRPQLVIGTHFFSPAHVM-------  459 (742)
T ss_dssp             --GSCSEEEECCCSCHHHHHHHHHHHH-HHSCTTCEEEECCSS--SCHHHHHTTSSCGGGEEEEECCSSTTTC-------
T ss_pred             --hhCCEEEEeccccHHHHHHHHHHHh-hcCCCCceEEecCCc--CChHHHHhhcCCccccccccccCCCCCC-------
Confidence              79999999999875  568899985 678999999987766  4456677666655689999987665532       


Q ss_pred             cceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          163 PFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       163 ~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                      + +++  ++.++.++++.++.+.++.+.+|..++.+.
T Consensus       460 ~-LVE--vi~g~~Ts~e~~~~~~~~~~~lgK~pV~vk  493 (742)
T 3zwc_A          460 R-LLE--VIPSRYSSPTTIATVMSLSKKIGKIGVVVG  493 (742)
T ss_dssp             C-EEE--EEECSSCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             c-eEE--EecCCCCCHHHHHHHHHHHHHhCCCCcccC
Confidence            1 222  234556677889999999999999888774

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.31  E-value=3.6e-12  Score=120.46  Aligned_cols=132  Identities=13%  Similarity=0.256  Sum_probs=94.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~  106 (335)
                      ...+++|+|||+|.||+.+|+.++..|++|++|||+++...     |+....++++++ +++|+|++++|.. .+..++.
T Consensus       161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell-~~aDvVil~vP~~~~t~~li~  234 (333)
T 3ba1_A          161 KFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELA-SNSDILVVACPLTPETTHIIN  234 (333)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHH-HTCSEEEECSCCCGGGTTCBC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHH-hcCCEEEEecCCChHHHHHhh
Confidence            45678999999999999999999999999999999986432     555567888887 7999999999986 4555552


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCCC------CceEeccccCCCCCcccccCCCcceecccc
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD------FDILCTHPMFGPESAKSSWENLPFMYDKVR  170 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~------~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~  170 (335)
                       +. ...++++++|+|+++.+....+.+.+.+..+      ..|...+|+..    ...|....++++|.+
T Consensus       235 ~~~-l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~----~~L~~~~nviltPH~  300 (333)
T 3ba1_A          235 REV-IDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP----EKLFGLENVVLLPHV  300 (333)
T ss_dssp             HHH-HHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCC----GGGGGCTTEEECSSC
T ss_pred             HHH-HhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCc----chhhcCCCEEECCcC
Confidence             22 1357899999999987655444554444322      24556677533    235555566777653

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.31  E-value=3.6e-12  Score=118.12  Aligned_cols=132  Identities=14%  Similarity=0.212  Sum_probs=92.3

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHH
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVL  105 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl  105 (335)
                      ....+++|||||+|.||+++|+.++..|++|++|||+++..+.     .....++++++ ++||+|++++|.. .+..++
T Consensus       118 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell-~~aDiV~l~~P~t~~t~~li  191 (290)
T 3gvx_A          118 TLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLF-RQSDFVLIAIPLTDKTRGMV  191 (290)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHH-HHCSEEEECCCCCTTTTTCB
T ss_pred             eeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHh-hccCeEEEEeeccccchhhh
Confidence            3456889999999999999999999999999999999765431     33455788888 7999999999964 344444


Q ss_pred             h-hccccccCCccEEEEcCCCCchHHHHHHhhCCCC-C-----ceEeccccCCCCCcccccCCCcceeccccc
Q 044593          106 K-SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD-F-----DILCTHPMFGPESAKSSWENLPFMYDKVRI  171 (335)
Q Consensus       106 ~-~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~-~-----~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~  171 (335)
                      . +. ...++++++++|++..+....+.+.+.+..+ .     .+....|+      ...|....++++|.+-
T Consensus       192 ~~~~-l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~------~pL~~~~nvilTPHia  257 (290)
T 3gvx_A          192 NSRL-LANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE------ITETNLRNAILSPHVA  257 (290)
T ss_dssp             SHHH-HTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS------CCSCCCSSEEECCSCS
T ss_pred             hHHH-HhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc------cchhhhhhhhcCcccc
Confidence            2 22 2457899999999987655555555444322 2     23334444      2345555677777643

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.30  E-value=1.8e-11  Score=115.89  Aligned_cols=136  Identities=18%  Similarity=0.177  Sum_probs=81.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.++..|++|++|||++...     .+.....++++++ ++||+|++++|.. .+..++.
T Consensus       168 ~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~-----~~~~~~~sl~ell-~~aDvVil~vP~t~~t~~li~  241 (340)
T 4dgs_A          168 SPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG-----VDWIAHQSPVDLA-RDSDVLAVCVAASAATQNIVD  241 (340)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT-----SCCEECSSHHHHH-HTCSEEEECC----------C
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc-----cCceecCCHHHHH-hcCCEEEEeCCCCHHHHHHhh
Confidence            4568999999999999999999999999999999987642     3444556888888 8999999999954 3555552


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc--ccccCCCcceecccc
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA--KSSWENLPFMYDKVR  170 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~--~~~~~g~~~i~~~~~  170 (335)
                       +. ...++++++++|++.......+.+.+.+..+.-.-.+..++..|..  ...|.-..++++|.+
T Consensus       242 ~~~-l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHi  307 (340)
T 4dgs_A          242 ASL-LQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQ  307 (340)
T ss_dssp             HHH-HHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSC
T ss_pred             HHH-HhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcC
Confidence             22 2458899999999877655556666666543212223445554431  123343445666653

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.28  E-value=1.5e-11  Score=116.50  Aligned_cols=140  Identities=14%  Similarity=0.183  Sum_probs=96.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.++..|++|++|||++...+...  |+....++++++ ++||+|++++|.. .+..++.
T Consensus       170 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~~~~~~l~ell-~~sDvV~l~~Plt~~T~~li~  246 (345)
T 4g2n_A          170 GLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLL-GASDIFLIAAPGRPELKGFLD  246 (345)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TCEECSSHHHHH-HTCSEEEECSCCCGGGTTCBC
T ss_pred             ccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--CCeEeCCHHHHH-hhCCEEEEecCCCHHHHHHhC
Confidence            45688999999999999999999999999999999976554332  666666889988 8999999999964 3444442


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc--ccccCCCcceecccc
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA--KSSWENLPFMYDKVR  170 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~--~~~~~g~~~i~~~~~  170 (335)
                      .-....++++++++|++..+....+.+.+.+..+.-.-.+..++..|..  ...|.-..++++|.+
T Consensus       247 ~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHi  312 (345)
T 4g2n_A          247 HDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHI  312 (345)
T ss_dssp             HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSC
T ss_pred             HHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCcc
Confidence            1112457899999999877655556665555433212223445554431  123444456776654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.27  E-value=9.6e-12  Score=117.02  Aligned_cols=141  Identities=13%  Similarity=0.184  Sum_probs=95.0

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHH
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVL  105 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl  105 (335)
                      ....+++|||||+|.||+.+|+.++..|++|++|||+++..+.+..  .....++++++ ++||+|++++|.. .+..++
T Consensus       133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell-~~aDvV~l~lPlt~~t~~li  209 (324)
T 3evt_A          133 STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADAL-ATANFIVNALPLTPTTHHLF  209 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHH-HHCSEEEECCCCCGGGTTCB
T ss_pred             ccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHH-hhCCEEEEcCCCchHHHHhc
Confidence            3456889999999999999999999999999999998764331111  11234677887 7899999999964 344444


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc---ccccCCCcceecccc
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA---KSSWENLPFMYDKVR  170 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~---~~~~~g~~~i~~~~~  170 (335)
                      ..-....++++++++|++..+....+.+.+.+..+.-.-.+...+..|.-   ...|.-..++++|.+
T Consensus       210 ~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHi  277 (324)
T 3evt_A          210 STELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHI  277 (324)
T ss_dssp             SHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSC
T ss_pred             CHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCcc
Confidence            21112457899999999987666556666665433211234566666541   134554556777654

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.26  E-value=1.1e-11  Score=117.85  Aligned_cols=138  Identities=14%  Similarity=0.208  Sum_probs=97.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.++..|++|++||+++... .+...|+....++++++ .++|+|++++|.. .+..++.
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell-~~aDvV~l~~P~t~~t~~li~  242 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLL-FHSDCVTLHCGLNEHNHHLIN  242 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHH-HHCSEEEECCCCCTTCTTSBS
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHH-hcCCEEEEcCCCCHHHHHHhH
Confidence            4568899999999999999999999999999999987543 24455776556788887 7899999999985 3444442


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCCC------CceEeccccCCCCCcccccCCCcceecccc
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD------FDILCTHPMFGPESAKSSWENLPFMYDKVR  170 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~------~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~  170 (335)
                       +. ...++++++++|+++.+....+.+.+.+..+      ..+...+|+....  ...+....++++|.+
T Consensus       243 ~~~-l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~--~~L~~~~nvi~tPHi  310 (347)
T 1mx3_A          243 DFT-VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ--GPLKDAPNLICTPHA  310 (347)
T ss_dssp             HHH-HTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTS--STTTTCSSEEECSSC
T ss_pred             HHH-HhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCC--chHHhCCCEEEEchH
Confidence             22 2457899999999988766555565555322      2455667764211  123344456666643

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.26  E-value=9.5e-12  Score=116.52  Aligned_cols=131  Identities=18%  Similarity=0.250  Sum_probs=93.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||+++|+.++..|++|++|||+++...      + ...++++++ .++|+|++++|... +..++.
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell-~~aDvV~l~~p~~~~t~~li~  212 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELL-KEADVVSLHTPLTPETHRLLN  212 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHH-HHCSEEEECCCCCTTTTTCBC
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHH-hhCCEEEEeCCCChHHHhhcC
Confidence            45678999999999999999999999999999999876543      2 245677877 78999999999873 555553


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCC-----CCceEeccccCCCCCcccccCCCcceecccc
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ-----DFDILCTHPMFGPESAKSSWENLPFMYDKVR  170 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~-----~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~  170 (335)
                       +. ...++++++++|+++......+.+.+.+..     ...+...||+....   ..|....++++|..
T Consensus       213 ~~~-l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~~eP~~~~~---~L~~~~nviltPh~  278 (311)
T 2cuk_A          213 RER-LFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTDPEPLPPGH---PLYALPNAVITPHI  278 (311)
T ss_dssp             HHH-HTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCSSSSCCTTS---GGGGCTTEEECCSC
T ss_pred             HHH-HhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCCCCCCCCCC---hhhhCCCEEECCcC
Confidence             22 145789999999998654433445554441     12344556764322   46666777887754

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.25  E-value=1.1e-11  Score=116.95  Aligned_cols=107  Identities=17%  Similarity=0.337  Sum_probs=82.1

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|+|||+|.||..+|..++..|++|++||++++..+.+.+.|+... ++++++ .++|+|++++|... +..++.
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l-~~aDvVi~~vp~~~~t~~~i~  229 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELA-AQSDFIVVACSLTPATEGLCN  229 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHH-HHCSEEEECCCCCTTTTTCBS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHH-hhCCEEEEeCCCChHHHHhhC
Confidence            456789999999999999999999999999999999876655666777655 778877 78999999999863 344442


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhC
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL  137 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l  137 (335)
                       ++. +.++++++++++++.+....+.+.+.+
T Consensus       230 ~~~~-~~mk~gailIn~srg~~v~~~aL~~aL  260 (330)
T 2gcg_A          230 KDFF-QKMKETAVFINISRGDVVNQDDLYQAL  260 (330)
T ss_dssp             HHHH-HHSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             HHHH-hcCCCCcEEEECCCCcccCHHHHHHHH
Confidence             231 357889999999887654444444444

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.25  E-value=2.5e-11  Score=113.82  Aligned_cols=137  Identities=13%  Similarity=0.142  Sum_probs=93.2

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce---ecChhhHhhcCCCEEEEecCch-hHH
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF---FADLNDLCELHPDVVLLSTSIL-STQ  102 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~---~~~~~~~~~~~aDvVIlavp~~-~~~  102 (335)
                      ....+++|||||+|.||+.+|+.++..|++|++|||+++..+     ++..   ..++++++ ++||+|++++|.. .+.
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~-----~~~~~~~~~~l~ell-~~aDiV~l~~Plt~~t~  208 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP-----GVESYVGREELRAFL-NQTRVLINLLPNTAQTV  208 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCT-----TCEEEESHHHHHHHH-HTCSEEEECCCCCGGGT
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhh-----hhhhhcccCCHHHHH-hhCCEEEEecCCchhhh
Confidence            345689999999999999999999999999999999876432     2221   14677887 8999999999965 455


Q ss_pred             HHHh-hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc---ccccCCCcceecccc
Q 044593          103 SVLK-SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA---KSSWENLPFMYDKVR  170 (335)
Q Consensus       103 ~vl~-~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~---~~~~~g~~~i~~~~~  170 (335)
                      .++. +. ...++++++++|++.......+.+.+.+..+.-.-.+..++.+|.-   ...|.-..++++|.+
T Consensus       209 ~li~~~~-l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHi  279 (315)
T 3pp8_A          209 GIINSEL-LDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHI  279 (315)
T ss_dssp             TCBSHHH-HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSC
T ss_pred             hhccHHH-HhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCC
Confidence            5552 22 2458899999999877655556665555433212223456655531   123444456666654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.25  E-value=1.3e-11  Score=117.36  Aligned_cols=108  Identities=19%  Similarity=0.268  Sum_probs=81.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.++..|++|++||++. ..+.+.+.|+....++++++ +++|+|++++|... +..++.
T Consensus       157 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~~~~~g~~~~~~l~ell-~~aDiV~l~~Plt~~t~~li~  234 (352)
T 3gg9_A          157 VLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGREN-SKERARADGFAVAESKDALF-EQSDVLSVHLRLNDETRSIIT  234 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHH-HHHHHHHTTCEECSSHHHHH-HHCSEEEECCCCSTTTTTCBC
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCC-CHHHHHhcCceEeCCHHHHH-hhCCEEEEeccCcHHHHHhhC
Confidence            4568999999999999999999999999999999985 33446677887777888888 79999999999653 443332


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL  137 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l  137 (335)
                      .-....++++++++|++..+....+.+.+.+
T Consensus       235 ~~~l~~mk~gailIN~aRg~~vd~~aL~~aL  265 (352)
T 3gg9_A          235 VADLTRMKPTALFVNTSRAELVEENGMVTAL  265 (352)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCTTHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCchhhcHHHHHHHH
Confidence            1112457899999999876543334444333

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.25  E-value=3.1e-11  Score=113.46  Aligned_cols=140  Identities=16%  Similarity=0.177  Sum_probs=94.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.++..|++|++|||++.....+  .+.....++++++ ++||+|++++|.. .+..++.
T Consensus       137 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~~~~~~~~l~ell-~~aDvV~l~lPlt~~T~~li~  213 (324)
T 3hg7_A          137 GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--DQVYQLPALNKML-AQADVIVSVLPATRETHHLFT  213 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--SEEECGGGHHHHH-HTCSEEEECCCCCSSSTTSBC
T ss_pred             ccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--hcccccCCHHHHH-hhCCEEEEeCCCCHHHHHHhH
Confidence            4568899999999999999999999999999999987533211  1112235678887 8999999999965 3455553


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc---ccccCCCcceecccc
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA---KSSWENLPFMYDKVR  170 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~---~~~~~g~~~i~~~~~  170 (335)
                      .-....+++|++++|++.......+.+.+.+..+.-.-.+..++..|.-   ...|.-..++++|.+
T Consensus       214 ~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHi  280 (324)
T 3hg7_A          214 ASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHN  280 (324)
T ss_dssp             TTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSC
T ss_pred             HHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCC
Confidence            2212468999999999877655556666555433211233456655541   123444456666654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.22  E-value=3e-11  Score=114.20  Aligned_cols=137  Identities=17%  Similarity=0.277  Sum_probs=93.1

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~  106 (335)
                      ...+++|+|||+|.||+.+|+.++..|++|++||++++. +.+.+.|+.. .++++++ .++|+|++|+|.. .+..++.
T Consensus       143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~e~l-~~aDiVil~vp~~~~t~~~i~  219 (333)
T 2d0i_A          143 SLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARY-MDIDELL-EKSDIVILALPLTRDTYHIIN  219 (333)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEE-CCHHHHH-HHCSEEEECCCCCTTTTTSBC
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-cCHHHHH-hhCCEEEEcCCCChHHHHHhC
Confidence            457889999999999999999999999999999999876 4455566654 3777777 7899999999988 5555554


Q ss_pred             h-ccccccCCccEEEEcCCCCchHHHHHHhhCCCC-CceEeccccCCCCC--cccccCCC-cceecccc
Q 044593          107 S-IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD-FDILCTHPMFGPES--AKSSWENL-PFMYDKVR  170 (335)
Q Consensus       107 ~-l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~-~~~v~~HPmaG~~~--~~~~~~g~-~~i~~~~~  170 (335)
                      + + .+.++++ +++|++.........+.+.+..+ ....+.+ .+++|.  ....|... .++++|.+
T Consensus       220 ~~~-~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglD-v~~~EP~~~~~L~~~~~nviltPh~  285 (333)
T 2d0i_A          220 EER-VKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATD-VFEKEPVREHELFKYEWETVLTPHY  285 (333)
T ss_dssp             HHH-HHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEES-CCSSSSCSCCGGGGCTTTEEECCSC
T ss_pred             HHH-HhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEec-CCCCCCCCCchHHcCCCCEEEcCcc
Confidence            2 2 1357889 99999865433333344444332 2233433 444332  12345555 56776653

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.22  E-value=3.6e-11  Score=112.16  Aligned_cols=134  Identities=16%  Similarity=0.181  Sum_probs=90.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||+++|+.++..|++|++|||+++ ..     +.....++++++ .+||+|++++|... +..++.
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~-----~~~~~~~l~ell-~~aDvV~l~~P~~~~t~~~i~  193 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG-----PWRFTNSLEEAL-REARAAVCALPLNKHTRGLVK  193 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS-----SSCCBSCSHHHH-TTCSEEEECCCCSTTTTTCBC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc-----CcccCCCHHHHH-hhCCEEEEeCcCchHHHHHhC
Confidence            45688999999999999999999999999999999876 11     444455778887 89999999999874 555553


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCCC-CceEeccccC---CCCC-cccccCCCcceecccc
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD-FDILCTHPMF---GPES-AKSSWENLPFMYDKVR  170 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~-~~~v~~HPma---G~~~-~~~~~~g~~~i~~~~~  170 (335)
                       +. ...++++++++|+++......+.+.+.+..+ ....+. -.+   +|.. ....|....++++|..
T Consensus       194 ~~~-l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~l-Dv~~~~ep~~~~~~L~~~~nviltPH~  261 (303)
T 1qp8_A          194 YQH-LALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFAS-DVWWGRNDFAKDAEFFSLPNVVATPWV  261 (303)
T ss_dssp             HHH-HTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEE-SCCTTTTCCGGGHHHHTSTTEEECCSC
T ss_pred             HHH-HhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEe-ccCCCCCCCCCCChhhcCCCEEECCCc
Confidence             23 2468899999999886443333444444322 211121 222   2222 1234555667777653

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.21  E-value=2.3e-11  Score=112.77  Aligned_cols=168  Identities=13%  Similarity=0.121  Sum_probs=108.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc---eecChhh-HhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP---FFADLND-LCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~---~~~~~~~-~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      +|||+|||+|.||+++|..|.++|++|++|+|+++..+.....|..   ...+..+ +. ..+|+||+|||...+.++++
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~D~vilavk~~~~~~~l~   80 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVT-NTFDVIIIAVKTHQLDAVIP   80 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCC-SCEEEEEECSCGGGHHHHGG
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcC-CCCCEEEEeCCccCHHHHHH
Confidence            4799999999999999999999999999999997654422333431   1223333 23 57999999999999999999


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCC-ccccc-CCCcceecccccCCChhHHHHHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPES-AKSSW-ENLPFMYDKVRIGNDEERIKRVDKF  184 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~-~~~~~-~g~~~i~~~~~~~~~~~~~~~~~~v  184 (335)
                      ++. +.++++++|+.+...-...     +.++.. +++++-+..+... ++... .+ +.-+   .++.    .+..+.+
T Consensus        81 ~l~-~~l~~~~~iv~~~nGi~~~-----~~~~~~-~v~~g~~~~~a~~~~pg~v~~~-~~~~---~~~~----~~~~~~l  145 (294)
T 3g17_A           81 HLT-YLAHEDTLIILAQNGYGQL-----EHIPFK-NVCQAVVYISGQKKGDVVTHFR-DYQL---RIQD----NALTRQF  145 (294)
T ss_dssp             GHH-HHEEEEEEEEECCSSCCCG-----GGCCCS-CEEECEEEEEEEEETTEEEEEE-EEEE---EEEC----SHHHHHH
T ss_pred             HHH-HhhCCCCEEEEeccCcccH-----hhCCCC-cEEEEEEEEEEEEcCCCEEEEC-CCEE---ecCc----cHHHHHH
Confidence            995 6788888888875432221     115532 3443322222211 11000 11 1111   1122    2456788


Q ss_pred             HHHHHhcCCEEEEeChHHHHHHHHHhhhhH
Q 044593          185 LDVFAKEGCRMVEMSCFDHDKYAAGSQFVT  214 (335)
Q Consensus       185 ~~l~~~~G~~v~~~~~~eHD~~~A~~s~lp  214 (335)
                      .++|+..|.+++..+.-....+-+++-..+
T Consensus       146 ~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~  175 (294)
T 3g17_A          146 RDLVQDSQIDIVLEANIQQAIWYKLLVNLG  175 (294)
T ss_dssp             HHHTTTSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCceEEChHHHHHHHHHHHHHHH
Confidence            899999999998888777777777655443

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.21  E-value=1.9e-11  Score=115.35  Aligned_cols=108  Identities=17%  Similarity=0.234  Sum_probs=82.8

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.++..|++|++|||++...+.+.+.|+.. .++++++ +++|+|++++|.. .+..++.
T Consensus       142 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~l~ell-~~aDvV~l~~P~t~~t~~li~  219 (330)
T 4e5n_A          142 GLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ-VACSELF-ASSDFILLALPLNADTLHLVN  219 (330)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEE-CCHHHHH-HHCSEEEECCCCSTTTTTCBC
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCcee-CCHHHHH-hhCCEEEEcCCCCHHHHHHhC
Confidence            45689999999999999999999999999999999986555566667654 3788887 7899999999965 3444442


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                       +. ...++++++++|++..+....+.+.+.+.
T Consensus       220 ~~~-l~~mk~gailIN~arg~~vd~~aL~~aL~  251 (330)
T 4e5n_A          220 AEL-LALVRPGALLVNPCRGSVVDEAAVLAALE  251 (330)
T ss_dssp             HHH-HTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             HHH-HhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence             22 24578999999998776555555555553

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.20  E-value=1.1e-10  Score=111.35  Aligned_cols=139  Identities=14%  Similarity=0.244  Sum_probs=94.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.++..|++|++||++.. .+.+.+.|+.. .++++++ +++|+|++++|... +..++.
T Consensus       173 ~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~-~~l~ell-~~aDvV~l~~Plt~~T~~li~  249 (365)
T 4hy3_A          173 LIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEP-ASLEDVL-TKSDFIFVVAAVTSENKRFLG  249 (365)
T ss_dssp             CSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEE-CCHHHHH-HSCSEEEECSCSSCC---CCC
T ss_pred             ccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeee-CCHHHHH-hcCCEEEEcCcCCHHHHhhcC
Confidence            45688999999999999999999999999999999863 34456677754 5788888 89999999999763 444442


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc---ccccCCCcceecccc
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA---KSSWENLPFMYDKVR  170 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~---~~~~~g~~~i~~~~~  170 (335)
                      .-....++++++++|++.......+.+.+.+..+.-. .+.-.+.+|.-   ...|.-..++++|.+
T Consensus       250 ~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHi  315 (365)
T 4hy3_A          250 AEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHR  315 (365)
T ss_dssp             HHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSC
T ss_pred             HHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCcc
Confidence            2112457899999999877655556666555443212 33455554431   123444456666654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.19  E-value=3.2e-11  Score=114.05  Aligned_cols=137  Identities=22%  Similarity=0.308  Sum_probs=93.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|+|||+|.||..+|..|+..|++|++||++++. +.+.+.|+.. .++++++ .++|+|++|+|... +..++.
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l-~~aDvVil~vp~~~~t~~~i~  223 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLL-RESDFVVLAVPLTRETYHLIN  223 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHH-HHCSEEEECCCCCTTTTTCBC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHH-hhCCEEEECCCCChHHHHhhC
Confidence            456789999999999999999999999999999999876 4455567654 4777877 78999999999876 444552


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCC-CCceEeccccCCCCCc--ccccCCCcceeccc
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ-DFDILCTHPMFGPESA--KSSWENLPFMYDKV  169 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~-~~~~v~~HPmaG~~~~--~~~~~g~~~i~~~~  169 (335)
                       ++ .+.++++++++|++.......+.+.+.+.. .....+.+ .+++|..  ...|....++++|.
T Consensus       224 ~~~-~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lD-v~~~EP~~~~~L~~~~~vi~tPh  288 (334)
T 2dbq_A          224 EER-LKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLD-VFEEEPYYNEELFKLDNVVLTPH  288 (334)
T ss_dssp             HHH-HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEES-CCSSSSCCCHHHHHCTTEEECSS
T ss_pred             HHH-HhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEec-CCCCCCCCCchhhcCCCEEECCc
Confidence             33 245789999999986543333344444432 22233444 4454421  12344445666654

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=99.18  E-value=8.2e-11  Score=113.05  Aligned_cols=207  Identities=12%  Similarity=0.091  Sum_probs=129.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC--------eEEEEcCCCCc-----HHHHHhC--------C------CceecCh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH--------TLLVHSRSDHS-----PAVRQQL--------N------APFFADL   81 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~--------~V~~~dr~~~~-----~~~a~~~--------g------~~~~~~~   81 (335)
                      .+..||+|||.|.+|+++|..|.++|+        +|.+|.|+++.     .+.....        |      +..++|+
T Consensus        32 ~~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl  111 (391)
T 4fgw_A           32 EKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDL  111 (391)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCH
Confidence            345699999999999999999999874        59999988753     2222211        2      2356788


Q ss_pred             hhHhhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCC-----CC--chHHHHHHhhCCCCCceEeccccCCCCC
Q 044593           82 NDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLS-----VK--EFPRNLFLKYLPQDFDILCTHPMFGPES  154 (335)
Q Consensus        82 ~~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~S-----vK--~~~~~~l~~~l~~~~~~v~~HPmaG~~~  154 (335)
                      .+++ +++|+||+++|...+.++++++. +.++++..|+.++=     .+  ..+.+.+.+.++.  ++.   -+.||.+
T Consensus       112 ~~al-~~ad~ii~avPs~~~r~~l~~l~-~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~--~~~---vLsGPs~  184 (391)
T 4fgw_A          112 IDSV-KDVDIIVFNIPHQFLPRICSQLK-GHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGI--QCG---ALSGANI  184 (391)
T ss_dssp             HHHH-TTCSEEEECSCGGGHHHHHHHHT-TTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCC--EEE---EEECSCC
T ss_pred             HHHH-hcCCEEEEECChhhhHHHHHHhc-cccCCCceeEEeccccccccccchhHHHHHHHHhCc--cce---eccCCch
Confidence            8887 89999999999999999999995 68889988887741     11  1234555555542  221   3568887


Q ss_pred             cccccCCCcceecccccCCC-----hhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhhHHHHHHH--HH-HcCC
Q 044593          155 AKSSWENLPFMYDKVRIGND-----EERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFVTHTMGRV--LE-RFGV  226 (335)
Q Consensus       155 ~~~~~~g~~~i~~~~~~~~~-----~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~lph~la~a--L~-~~~~  226 (335)
                      +.+...+.|..++-+ +...     ..+....+.++++|..--++++..+.---=++.+   .+--++|.+  +. .++.
T Consensus       185 A~EVa~~~pta~~iA-~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgG---AlKNViAIAaGi~dGlg~  260 (391)
T 4fgw_A          185 ATEVAQEHWSETTVA-YHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICG---ALKNVVALGCGFVEGLGW  260 (391)
T ss_dssp             HHHHHTTCCEEEEEE-CCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHH---HHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhcCCCceEEEE-ecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHH---HHHHHHHHHHHHHhcCCC
Confidence            766667776654311 0000     0011123668889998889988886332222222   222223222  11 1111


Q ss_pred             CC---CCCCCcchhhHHHHHHHh
Q 044593          227 ES---SPINTKGYETLLDLVDNT  246 (335)
Q Consensus       227 ~~---~~~~~~gf~~~~rl~~~i  246 (335)
                      ..   ..+-+.|+..+.|+...+
T Consensus       261 G~NakAALitrGl~Em~rlg~al  283 (391)
T 4fgw_A          261 GNNASAAIQRVGLGEIIRFGQMF  283 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Confidence            11   124467888898887664

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.18  E-value=1e-10  Score=115.61  Aligned_cols=176  Identities=10%  Similarity=0.011  Sum_probs=111.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH-H-HHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST-Q-SVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~-~-~vl~  106 (335)
                      ..+++|+|||+|.||..+|+.++..|++|+++|+++...+.+.+.|+.. .++++++ .++|+||.|++...+ . +.+ 
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l-~~aDvVi~atgt~~~i~~~~l-  348 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAI-GDADIVVTATGNKDIIMLEHI-  348 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHG-GGCSEEEECSSSSCSBCHHHH-
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHH-hCCCEEEECCCCHHHHHHHHH-
Confidence            4678999999999999999999999999999999988777788888853 4667777 789999999986652 1 222 


Q ss_pred             hccccccCCccEEEEcCCCCc-hHHHHHHh-hCCCCCceEec-----cccCCCCCcccccCCCcceecccccCCCh----
Q 044593          107 SIPFQRLKRSTLFVDVLSVKE-FPRNLFLK-YLPQDFDILCT-----HPMFGPESAKSSWENLPFMYDKVRIGNDE----  175 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~-~~~~~l~~-~l~~~~~~v~~-----HPmaG~~~~~~~~~g~~~i~~~~~~~~~~----  175 (335)
                          ..++++.+|++++..+. .....+.. .+.. ..+.+.     .|-++... .....|....+.+ ..+...    
T Consensus       349 ----~~mk~ggilvnvG~~~~eId~~aL~~~aL~~-~~I~~~ldv~~~~~~~~~l-~LL~~grlvnL~~-~TPH~a~~~~  421 (494)
T 3ce6_A          349 ----KAMKDHAILGNIGHFDNEIDMAGLERSGATR-VNVKPQVDLWTFGDTGRSI-IVLSEGRLLNLGN-ATGHPSFVMS  421 (494)
T ss_dssp             ----HHSCTTCEEEECSSSGGGBCHHHHHHTTCEE-EEEETTEEEEECTTTCCEE-EEEGGGSCHHHHH-SCCSCHHHHH
T ss_pred             ----HhcCCCcEEEEeCCCCCccCHHHHHHhhhcc-ceEEEEEEEeecCCcchHH-HHHhCCCEEeccC-CCCCccccch
Confidence                34678999999998765 22344433 2211 011111     11111110 0011222211110 001111    


Q ss_pred             --hHHHHHHHHHHHHH--hcCCEEEEeChHHHHHHHHHhhhhHHH
Q 044593          176 --ERIKRVDKFLDVFA--KEGCRMVEMSCFDHDKYAAGSQFVTHT  216 (335)
Q Consensus       176 --~~~~~~~~v~~l~~--~~G~~v~~~~~~eHD~~~A~~s~lph~  216 (335)
                        -..+..+.+..+++  .++.. +++.|++||+.+|.+ ||||+
T Consensus       422 ~s~~~qa~~ai~~~~~g~~~~~~-V~~~P~~~De~vA~l-hL~~l  464 (494)
T 3ce6_A          422 NSFANQTIAQIELWTKNDEYDNE-VYRLPKHLDEKVARI-HVEAL  464 (494)
T ss_dssp             HHHHHHHHHHHHHHHTGGGCCSS-EECCCHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCE-EEECHHHHHHHHHHh-hHHHH
Confidence              11234455555555  46655 478999999999998 99997

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.16  E-value=4.9e-11  Score=113.99  Aligned_cols=110  Identities=15%  Similarity=0.208  Sum_probs=84.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch-hHHHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL-STQSVL  105 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~-~~~~vl  105 (335)
                      ...+++|||||+|.||..+|+.++..|++ |++||+++...+.+.+.|+....++++++ .++|+|++++|.. .+..++
T Consensus       161 ~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~aDvV~l~~P~t~~t~~li  239 (364)
T 2j6i_A          161 DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELV-AQADIVTVNAPLHAGTKGLI  239 (364)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHH-HTCSEEEECCCCSTTTTTCB
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHH-hcCCEEEECCCCChHHHHHh
Confidence            45788999999999999999999999997 99999998776667778877666788888 7999999999986 344444


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                      .+-....++++++++|++.......+.+.+.+.
T Consensus       240 ~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~  272 (364)
T 2j6i_A          240 NKELLSKFKKGAWLVNTARGAICVAEDVAAALE  272 (364)
T ss_dssp             CHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CHHHHhhCCCCCEEEECCCCchhCHHHHHHHHH
Confidence            321124578999999998765444455554443

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.16  E-value=1.6e-10  Score=111.81  Aligned_cols=122  Identities=17%  Similarity=0.215  Sum_probs=85.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.+...|++|++||+++....    .+.....++++++ ++||+|++++|... +..++.
T Consensus       153 el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~----~~~~~~~sl~ell-~~aDvV~lhvPlt~~T~~li~  227 (416)
T 3k5p_A          153 EVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY----GNVKPAASLDELL-KTSDVVSLHVPSSKSTSKLIT  227 (416)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB----TTBEECSSHHHHH-HHCSEEEECCCC-----CCBC
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc----cCcEecCCHHHHH-hhCCEEEEeCCCCHHHhhhcC
Confidence            45688999999999999999999999999999999864321    1334456788888 89999999999754 444442


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPES  154 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~  154 (335)
                      .-....+++|++++|++.......+++.+.+..+.-.-.+..+|..|.
T Consensus       228 ~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP  275 (416)
T 3k5p_A          228 EAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEP  275 (416)
T ss_dssp             HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCC
T ss_pred             HHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCC
Confidence            111235789999999987766655666666654432223445665553

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.14  E-value=1e-10  Score=112.94  Aligned_cols=95  Identities=18%  Similarity=0.156  Sum_probs=75.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHH-cCCeEEEEc---CCCCcHHHH-HhCC------------C------c-eecChhhHhh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFAR-HHHTLLVHS---RSDHSPAVR-QQLN------------A------P-FFADLNDLCE   86 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~-~G~~V~~~d---r~~~~~~~a-~~~g------------~------~-~~~~~~~~~~   86 (335)
                      +|||+|||+|.||+.+|..|++ +|++|++||   |+++..+.+ .+.|            .      . .++++.+++ 
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-   80 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAI-   80 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHH-
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHh-
Confidence            4799999999999999999988 599999999   665555442 3222            1      1 345666666 


Q ss_pred             cCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCCCc
Q 044593           87 LHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus        87 ~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                      .++|+||+|||.....++++++. +.++++++|+++.+.++
T Consensus        81 ~~aD~Vilav~~~~~~~v~~~l~-~~l~~~~ivv~~~~~~G  120 (404)
T 3c7a_A           81 SGADVVILTVPAFAHEGYFQAMA-PYVQDSALIVGLPSQAG  120 (404)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHT-TTCCTTCEEEETTCCTT
T ss_pred             CCCCEEEEeCchHHHHHHHHHHH-hhCCCCcEEEEcCCCcc
Confidence            78999999999999999999995 67888999998765565

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.14  E-value=1.2e-10  Score=112.58  Aligned_cols=137  Identities=18%  Similarity=0.179  Sum_probs=89.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.++..|++|++||+++....    .++....++++++ ++||+|++++|... +..++.
T Consensus       142 el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~----~~~~~~~~l~ell-~~aDvV~l~~P~t~~t~~li~  216 (404)
T 1sc6_A          142 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLL-NMSDVVSLHVPENPSTKNMMG  216 (404)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHH-HHCSEEEECCCSSTTTTTCBC
T ss_pred             ccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhcc----CCceecCCHHHHH-hcCCEEEEccCCChHHHHHhh
Confidence            45788999999999999999999999999999999865321    1244455788888 78999999999863 444442


Q ss_pred             h-ccccccCCccEEEEcCCCCchHHHHHHhhCCCC------CceEeccccCCCCCc-ccccCCCcceecccc
Q 044593          107 S-IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD------FDILCTHPMFGPESA-KSSWENLPFMYDKVR  170 (335)
Q Consensus       107 ~-l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~------~~~v~~HPmaG~~~~-~~~~~g~~~i~~~~~  170 (335)
                      . . ...+++|++++|++.....-.+.+.+.+..+      ..+...+|+.+.+.. ...|....++++|.+
T Consensus       217 ~~~-l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi  287 (404)
T 1sc6_A          217 AKE-ISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHI  287 (404)
T ss_dssp             HHH-HHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCC
T ss_pred             HHH-HhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCC
Confidence            1 2 2457899999999877644445555554332      245667787654311 134555566777754

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.12  E-value=7.9e-11  Score=108.24  Aligned_cols=117  Identities=14%  Similarity=0.194  Sum_probs=84.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      ..++|+|||+|.||.+++..|.+.|++|+++||+++..+ .+.+.|+....++.+.+ .++|+||+|||......+...+
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~-~~aDiVi~atp~~~~~~~~~~i  206 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVI-DKVQVIVNTTSVGLKDEDPEIF  206 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTG-GGCSEEEECSSTTSSTTCCCSS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhh-cCCCEEEEeCCCCCCCCCCCCC
Confidence            467999999999999999999999999999999976543 33445655554666766 7899999999988643221223


Q ss_pred             cccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccC
Q 044593          109 PFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMF  150 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPma  150 (335)
                      ....++++++|+|++..++...+..++   .+..++.++||.
T Consensus       207 ~~~~l~~g~~viDv~~~~t~ll~~a~~---~g~~~v~g~~ml  245 (275)
T 2hk9_A          207 NYDLIKKDHVVVDIIYKETKLLKKAKE---KGAKLLDGLPML  245 (275)
T ss_dssp             CGGGCCTTSEEEESSSSCCHHHHHHHH---TTCEEECSHHHH
T ss_pred             CHHHcCCCCEEEEcCCChHHHHHHHHH---CcCEEECCHHHH
Confidence            224578899999998844444444443   356777777766

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=99.02  E-value=2.4e-10  Score=108.25  Aligned_cols=105  Identities=16%  Similarity=0.316  Sum_probs=77.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||+++|+.++..|++|++||+++...   .+.++. ..++++++ .+||+|++++|... +..++.
T Consensus       145 ~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~-~~~l~ell-~~aDvV~l~~Plt~~t~~li~  219 (343)
T 2yq5_A          145 EIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLT-YTDFDTVL-KEADIVSLHTPLFPSTENMIG  219 (343)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCE-ECCHHHHH-HHCSEEEECCCCCTTTTTCBC
T ss_pred             ccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhcccc-ccCHHHHH-hcCCEEEEcCCCCHHHHHHhh
Confidence            4467899999999999999999999999999999998642   122333 34788888 79999999999642 333332


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL  137 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l  137 (335)
                      .-....++++++++|++..+....+.+.+.+
T Consensus       220 ~~~l~~mk~gailIN~aRg~~vd~~aL~~aL  250 (343)
T 2yq5_A          220 EKQLKEMKKSAYLINCARGELVDTGALIKAL  250 (343)
T ss_dssp             HHHHHHSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCChhhhHHHHHHHH
Confidence            1112357899999999987655555555554

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.01  E-value=4.1e-09  Score=102.73  Aligned_cols=174  Identities=14%  Similarity=0.135  Sum_probs=107.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-------------------CC-CceecChhhHhhcCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-------------------LN-APFFADLNDLCELHP   89 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-------------------~g-~~~~~~~~~~~~~~a   89 (335)
                      .+.+|+|||+|.+|..+|..|++.||+|+++|.|++..+...+                   .| +..+++..+.+ .++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai-~~a   98 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAV-AAT   98 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHH-HTS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHH-hcC
Confidence            4679999999999999999999999999999999876653322                   11 23456677766 789


Q ss_pred             CEEEEecCch----------hHHHHHhhccccccC---CccEEEEcCCCCchHH-----HHHHhhCCCCC-ceEeccccC
Q 044593           90 DVVLLSTSIL----------STQSVLKSIPFQRLK---RSTLFVDVLSVKEFPR-----NLFLKYLPQDF-DILCTHPMF  150 (335)
Q Consensus        90 DvVIlavp~~----------~~~~vl~~l~~~~l~---~~~iVvd~~SvK~~~~-----~~l~~~l~~~~-~~v~~HPma  150 (335)
                      |++|+|||..          .+..+.+.+. +.++   ++++|+.-|++.....     ..+++.. .+. .+++..|-+
T Consensus        99 d~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~-~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~PEr  176 (444)
T 3vtf_A           99 DATFIAVGTPPAPDGSADLRYVEAAARAVG-RGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASNPEF  176 (444)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHH-HHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEECCCC
T ss_pred             CceEEEecCCCCCCCCCCcHHHHHHHHHHH-HHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecCccc
Confidence            9999999752          3566666664 4453   5778888776654332     2233222 222 245544544


Q ss_pred             CCCCcc-cccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHHHHHHHHHhhhh
Q 044593          151 GPESAK-SSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFDHDKYAAGSQFV  213 (335)
Q Consensus       151 G~~~~~-~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~eHD~~~A~~s~l  213 (335)
                      -.+-.. ..+...+-++    +|..  ++...+.+.++++.+...++.+++.. -+++.+..+.
T Consensus       177 l~eG~a~~d~~~~~riV----iG~~--~~~a~~~~~~ly~~~~~~~~~~~~~~-AE~~Kl~eN~  233 (444)
T 3vtf_A          177 LREGSALEDFFKPDRIV----IGAG--DERAASFLLDVYKAVDAPKLVMKPRE-AELVKYASNV  233 (444)
T ss_dssp             CCTTSHHHHHHSCSCEE----EEES--SHHHHHHHHHHTTTSCSCEEEECHHH-HHHHHHHHHH
T ss_pred             ccCCccccccccCCcEE----EcCC--CHHHHHHHHHHHhccCCCEEEechhH-HHHHHHHHHH
Confidence            332110 0001111111    2322  23456778889999888788888764 3455554433

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.98  E-value=4.7e-10  Score=105.93  Aligned_cols=107  Identities=14%  Similarity=0.252  Sum_probs=78.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.++..|++|++||++++..  +.+ .+....++++++ .++|+|++++|... +..++.
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell-~~aDvV~l~~p~~~~t~~li~  218 (333)
T 1j4a_A          143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLY-KQADVISLHVPDVPANVHMIN  218 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHH-HHCSEEEECSCCCGGGTTCBS
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHH-hhCCEEEEcCCCcHHHHHHHh
Confidence            3457899999999999999999999999999999998654  223 244444788887 78999999999764 444442


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                      .-....++++++++|++.......+.+.+.+.
T Consensus       219 ~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  250 (333)
T 1j4a_A          219 DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD  250 (333)
T ss_dssp             HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            11123578999999998765544455555553

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.94  E-value=4.5e-09  Score=86.69  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=80.4

Q ss_pred             CCCeEEEEcc----cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           30 TSLKIAVIGF----GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        30 ~~~kI~IIG~----G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      +..+|+|||+    |.||..+++.|.+.|++|+.++++.+..     .|...+.++.++. +.+|++++++|.....+++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~-~~vDlvii~vp~~~v~~v~   86 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELP-KDVDVIVFVVPPKVGLQVA   86 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSC-TTCCEEEECSCHHHHHHHH
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhC-CCCCEEEEEeCHHHHHHHH
Confidence            4678999999    9999999999999999977777765333     4777788888887 7899999999998889999


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEe
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC  145 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~  145 (335)
                      +++. . ...+.+|++.++......+..++   .+.++++
T Consensus        87 ~~~~-~-~g~~~i~~~~~~~~~~l~~~a~~---~Gi~~ig  121 (138)
T 1y81_A           87 KEAV-E-AGFKKLWFQPGAESEEIRRFLEK---AGVEYSF  121 (138)
T ss_dssp             HHHH-H-TTCCEEEECTTSCCHHHHHHHHH---HTCEEEC
T ss_pred             HHHH-H-cCCCEEEEcCccHHHHHHHHHHH---CCCEEEc
Confidence            8774 2 45667888887664444444433   3566765

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.92  E-value=1.1e-09  Score=103.49  Aligned_cols=106  Identities=16%  Similarity=0.254  Sum_probs=78.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.++..|++|++||+++...  + +.++ ...++++++ .++|+|++++|... +..++.
T Consensus       142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~-~~~~l~ell-~~aDvV~~~~P~~~~t~~li~  216 (333)
T 1dxy_A          142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDF-DYVSLEDLF-KQSDVIDLHVPGIEQNTHIIN  216 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTC-EECCHHHHH-HHCSEEEECCCCCGGGTTSBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhcc-ccCCHHHHH-hcCCEEEEcCCCchhHHHHhC
Confidence            3457899999999999999999999999999999987543  1 1122 234788887 78999999999765 444442


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                       +. ...++++++++|+++......+.+.+.+..
T Consensus       217 ~~~-l~~mk~ga~lIn~srg~~vd~~aL~~aL~~  249 (333)
T 1dxy_A          217 EAA-FNLMKPGAIVINTARPNLIDTQAMLSNLKS  249 (333)
T ss_dssp             HHH-HHHSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred             HHH-HhhCCCCcEEEECCCCcccCHHHHHHHHHh
Confidence             22 235789999999988765555666665543

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.90  E-value=1.6e-09  Score=98.66  Aligned_cols=116  Identities=14%  Similarity=0.149  Sum_probs=80.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      .. +|+|||+|.||.+++..|.+.|++|+++||+++.. +.+.+.|.. ..++.++  .++|+||+|||......+...+
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~--~~~Divi~~tp~~~~~~~~~~l  191 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA--REARLLVNATRVGLEDPSASPL  191 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG--GGCSEEEECSSTTTTCTTCCSS
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc--cCCCEEEEccCCCCCCCCCCCC
Confidence            46 99999999999999999999999999999997653 344444554 3455554  5799999999988532111112


Q ss_pred             cccccCCccEEEEcCCCCch--HHHHHHhhCCCCCceEeccccCCC
Q 044593          109 PFQRLKRSTLFVDVLSVKEF--PRNLFLKYLPQDFDILCTHPMFGP  152 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~SvK~~--~~~~l~~~l~~~~~~v~~HPmaG~  152 (335)
                      ....++++++|+|++.....  ..+.+++   .+..++.++||...
T Consensus       192 ~~~~l~~g~~viD~~~~p~~t~l~~~a~~---~g~~~v~g~~mlv~  234 (263)
T 2d5c_A          192 PAELFPEEGAAVDLVYRPLWTRFLREAKA---KGLKVQTGLPMLAW  234 (263)
T ss_dssp             CGGGSCSSSEEEESCCSSSSCHHHHHHHH---TTCEEECSHHHHHH
T ss_pred             CHHHcCCCCEEEEeecCCcccHHHHHHHH---CcCEEECcHHHHHH
Confidence            12457889999999765332  2333332   35567777776643

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.90  E-value=2.9e-10  Score=106.38  Aligned_cols=94  Identities=12%  Similarity=0.181  Sum_probs=72.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHc-CC-eEEEEcCCCCcHH-HHHhCC--CceecChhhHhhcCCCEEEEecCchhHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARH-HH-TLLVHSRSDHSPA-VRQQLN--APFFADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~-G~-~V~~~dr~~~~~~-~a~~~g--~~~~~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      ....++|+|||+|.||..++..|.+. |+ +|.+|||+++..+ .+.+.+  +....++.+++ +++|+||+|||..  .
T Consensus       132 ~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v-~~aDiVi~atp~~--~  208 (312)
T 2i99_A          132 PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAV-AGADVIITVTLAT--E  208 (312)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHH-TTCSEEEECCCCS--S
T ss_pred             CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHH-hcCCEEEEEeCCC--C
Confidence            34578999999999999999999886 76 8999999987654 444556  66667888887 7899999999952  2


Q ss_pred             HHHhhccccccCCccEEEEcCCCCc
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                      .++..   +.+++|++|+|+++.+.
T Consensus       209 ~v~~~---~~l~~g~~vi~~g~~~p  230 (312)
T 2i99_A          209 PILFG---EWVKPGAHINAVGASRP  230 (312)
T ss_dssp             CCBCG---GGSCTTCEEEECCCCST
T ss_pred             cccCH---HHcCCCcEEEeCCCCCC
Confidence            23321   35789999999976654

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.88  E-value=7e-10  Score=106.15  Aligned_cols=104  Identities=18%  Similarity=0.258  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-----HHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-----TQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-----~~~  103 (335)
                      ..+++|||||+|.||+.+|+.++..|++|++||++....    . +.....++++++ ++||+|++++|...     +..
T Consensus       117 l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~----~-~~~~~~sl~ell-~~aDiV~l~~Plt~~g~~~T~~  190 (381)
T 3oet_A          117 LRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR----G-DEGDFRTLDELV-QEADVLTFHTPLYKDGPYKTLH  190 (381)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHT----T-CCSCBCCHHHHH-HHCSEEEECCCCCCSSTTCCTT
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHh----c-cCcccCCHHHHH-hhCCEEEEcCcCCccccccchh
Confidence            457899999999999999999999999999999853211    1 223356788888 78999999999653     233


Q ss_pred             HHhhccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                      ++..-....+++|++++|++.......+.+.+.+.
T Consensus       191 li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~  225 (381)
T 3oet_A          191 LADETLIRRLKPGAILINACRGPVVDNAALLARLN  225 (381)
T ss_dssp             SBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            33211123578999999998765444455555554

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.88  E-value=1.7e-09  Score=101.95  Aligned_cols=104  Identities=12%  Similarity=0.249  Sum_probs=75.8

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.++..|++|++||+++...  + +.++ ...++++++ .++|+|++++|... +..++.
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~-~~~~l~ell-~~aDvV~~~~p~t~~t~~li~  217 (331)
T 1xdw_A          143 EVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYC-TQVSLDEVL-EKSDIITIHAPYIKENGAVVT  217 (331)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTC-EECCHHHHH-HHCSEEEECCCCCTTTCCSBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhcc-ccCCHHHHH-hhCCEEEEecCCchHHHHHhC
Confidence            3457899999999999999999999999999999987543  1 1222 344788887 78999999999753 333332


Q ss_pred             -hccccccCCccEEEEcCCCCchHHHHHHhhC
Q 044593          107 -SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL  137 (335)
Q Consensus       107 -~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l  137 (335)
                       +. ...++++++++|++.......+.+.+.+
T Consensus       218 ~~~-l~~mk~ga~lin~srg~~vd~~aL~~aL  248 (331)
T 1xdw_A          218 RDF-LKKMKDGAILVNCARGQLVDTEAVIEAV  248 (331)
T ss_dssp             HHH-HHTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             HHH-HhhCCCCcEEEECCCcccccHHHHHHHH
Confidence             12 1357899999999876544344555444

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.87  E-value=6.4e-10  Score=106.58  Aligned_cols=103  Identities=19%  Similarity=0.265  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-----HHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-----TQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-----~~~  103 (335)
                      ..+++|||||+|.||+++|+.|+..|++|++||+++...    ..|.. ..++++++ .+||+|++++|...     +..
T Consensus       114 l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~~-~~~l~ell-~~aDvV~l~~Plt~~g~~~T~~  187 (380)
T 2o4c_A          114 LAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPDGE-FVSLERLL-AEADVISLHTPLNRDGEHPTRH  187 (380)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STTSC-CCCHHHHH-HHCSEEEECCCCCSSSSSCCTT
T ss_pred             cCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccCcc-cCCHHHHH-HhCCEEEEeccCccccccchhh
Confidence            457899999999999999999999999999999865321    23432 45788887 78999999999765     334


Q ss_pred             HHh-hccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593          104 VLK-SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus       104 vl~-~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                      ++. +. ...+++|++++|++.......+.+.+.+.
T Consensus       188 li~~~~-l~~mk~gailIN~sRG~vvd~~aL~~aL~  222 (380)
T 2o4c_A          188 LLDEPR-LAALRPGTWLVNASRGAVVDNQALRRLLE  222 (380)
T ss_dssp             SBCHHH-HHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             hcCHHH-HhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            442 22 24578999999998765444455555553

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.85  E-value=5.2e-09  Score=96.87  Aligned_cols=93  Identities=19%  Similarity=0.260  Sum_probs=72.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee--cChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF--ADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      ...+++|+|||+|.||..+++.++..|++|++|||+++..+.+.+.|+...  .++.+++ .++|+|++++|...+.+  
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l-~~aDvVi~~~p~~~i~~--  228 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQEL-RDVDVCINTIPALVVTA--  228 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHT-TTCSEEEECCSSCCBCH--
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHh-cCCCEEEECCChHHhCH--
Confidence            346789999999999999999999999999999999866555566776542  4566776 79999999999765422  


Q ss_pred             hhccccccCCccEEEEcCCC
Q 044593          106 KSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ..+  ..++++.+++|++..
T Consensus       229 ~~l--~~mk~~~~lin~ar~  246 (293)
T 3d4o_A          229 NVL--AEMPSHTFVIDLASK  246 (293)
T ss_dssp             HHH--HHSCTTCEEEECSST
T ss_pred             HHH--HhcCCCCEEEEecCC
Confidence            122  246789999999864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.83  E-value=8.5e-09  Score=95.70  Aligned_cols=93  Identities=19%  Similarity=0.255  Sum_probs=72.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce--ecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF--FADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      ....++|+|||+|.||..+++.++..|++|++|||+++..+.+.+.|+..  ..++++++ .++|+||+++|...+.+- 
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l-~~aDvVi~~~p~~~i~~~-  231 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHV-KDIDICINTIPSMILNQT-  231 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHS-TTCSEEEECCSSCCBCHH-
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHh-hCCCEEEECCChhhhCHH-
Confidence            34678999999999999999999999999999999986555455567643  24667777 799999999998643221 


Q ss_pred             hhccccccCCccEEEEcCCC
Q 044593          106 KSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~Sv  125 (335)
                       .+  ..++++.+++|++..
T Consensus       232 -~~--~~mk~g~~lin~a~g  248 (300)
T 2rir_A          232 -VL--SSMTPKTLILDLASR  248 (300)
T ss_dssp             -HH--TTSCTTCEEEECSST
T ss_pred             -HH--HhCCCCCEEEEEeCC
Confidence             12  347789999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.82  E-value=3.5e-09  Score=87.41  Aligned_cols=88  Identities=22%  Similarity=0.304  Sum_probs=68.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCCc--eecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNAP--FFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~~--~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      .++|+|||+|.||..++..|.+.|++|+++||+++.. +.+.+.|..  ...+..+.+ .++|+||.|||....  ++  
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~Divi~at~~~~~--~~--   95 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLI-KNNDVIITATSSKTP--IV--   95 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHH-HTCSEEEECSCCSSC--SB--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHh-cCCCEEEEeCCCCCc--Ee--
Confidence            7899999999999999999999999999999998765 345566654  345667777 799999999997732  11  


Q ss_pred             ccccccCCccEEEEcCC
Q 044593          108 IPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~S  124 (335)
                       ....++++.+++|++.
T Consensus        96 -~~~~l~~g~~vid~~~  111 (144)
T 3oj0_A           96 -EERSLMPGKLFIDLGN  111 (144)
T ss_dssp             -CGGGCCTTCEEEECCS
T ss_pred             -eHHHcCCCCEEEEccC
Confidence             1134678899999863

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.81  E-value=8.5e-09  Score=85.72  Aligned_cols=104  Identities=15%  Similarity=0.112  Sum_probs=78.4

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHHcCCeEEEEcCCC--CcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           31 SLKIAVIGF----GNFGQFLAKAFARHHHTLLVHSRSD--HSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        31 ~~kI~IIG~----G~mG~siA~~L~~~G~~V~~~dr~~--~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      ..+|+|||+    |.||..+++.|.+.|++|+.++++.  +..     .|+..+.++.++. ..+|++++|+|...+.++
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~-~~~Dlvii~vp~~~v~~v   86 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVP-EKVDMVDVFRNSEAAWGV   86 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCS-SCCSEEECCSCSTHHHHH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcC-CCCCEEEEEeCHHHHHHH
Confidence            567999999    8999999999999999977777765  322     4777777888876 789999999999989999


Q ss_pred             HhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEe
Q 044593          105 LKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC  145 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~  145 (335)
                      +.++. . ...+.+|++.++......+.++   ..+.++++
T Consensus        87 ~~~~~-~-~g~~~i~i~~~~~~~~l~~~a~---~~Gi~~ig  122 (145)
T 2duw_A           87 AQEAI-A-IGAKTLWLQLGVINEQAAVLAR---EAGLSVVM  122 (145)
T ss_dssp             HHHHH-H-HTCCEEECCTTCCCHHHHHHHH---TTTCEEEC
T ss_pred             HHHHH-H-cCCCEEEEcCChHHHHHHHHHH---HcCCEEEc
Confidence            98874 2 4556788887655333333332   34667775

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.81  E-value=9.9e-09  Score=80.69  Aligned_cols=91  Identities=18%  Similarity=0.201  Sum_probs=69.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHhCCCce----ec---ChhhHhhcCCCEEEEecCchhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSPAVRQQLNAPF----FA---DLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~~a~~~g~~~----~~---~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      .+++|+|+|+|.||..++..|.+.| ++|+++||+++..+.....++..    ..   +..+++ .++|+||.|+|....
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~d~vi~~~~~~~~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKAL-GGFDAVISAAPFFLT   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHT-TTCSEEEECSCGGGH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHH-cCCCEEEECCCchhh
Confidence            4579999999999999999999999 89999999987766555555532    12   223444 689999999998876


Q ss_pred             HHHHhhccccccCCccEEEEcCCC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ..++...    .+.+..++|+++.
T Consensus        83 ~~~~~~~----~~~g~~~~~~~~~  102 (118)
T 3ic5_A           83 PIIAKAA----KAAGAHYFDLTED  102 (118)
T ss_dssp             HHHHHHH----HHTTCEEECCCSC
T ss_pred             HHHHHHH----HHhCCCEEEecCc
Confidence            6666554    3456778888654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.78  E-value=1.7e-08  Score=81.72  Aligned_cols=94  Identities=13%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-hCCCce-e---cChhhH----hhcCCCEEEEecCchh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-QLNAPF-F---ADLNDL----CELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-~~g~~~-~---~~~~~~----~~~~aDvVIlavp~~~  100 (335)
                      +.|+|+|+|+|.+|..++..|.+.|++|+++|++++..+... +.|+.. .   .+.+.+    + .++|+||+|+|...
T Consensus         3 ~~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~-~~~d~vi~~~~~~~   81 (140)
T 1lss_A            3 HGMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGI-EDADMYIAVTGKEE   81 (140)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTT-TTCSEEEECCSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCc-ccCCEEEEeeCCch
Confidence            358999999999999999999999999999999987655444 346532 1   122221    3 57999999999886


Q ss_pred             HHHHHhhccccccCCccEEEEcCCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ....+..+. ..++++.+|+.+.+.
T Consensus        82 ~~~~~~~~~-~~~~~~~ii~~~~~~  105 (140)
T 1lss_A           82 VNLMSSLLA-KSYGINKTIARISEI  105 (140)
T ss_dssp             HHHHHHHHH-HHTTCCCEEEECSST
T ss_pred             HHHHHHHHH-HHcCCCEEEEEecCH
Confidence            555444442 335666777766543

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.76  E-value=3.1e-08  Score=92.65  Aligned_cols=112  Identities=17%  Similarity=0.136  Sum_probs=75.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHH-Hh---------C--CCceecChhhHhhcCCCEEEEecC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVR-QQ---------L--NAPFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a-~~---------~--g~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      .|||+|||+|.||+++|..|..+|+ +|++||++++..+.. .+         .  .+..+++. +.+ ++||+||+|++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~-~~aDiVi~avg   81 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADI-SGSDVVIITAS   81 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGG-TTCSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHh-CCCCEEEEeCC
Confidence            5799999999999999999999998 999999998755421 11         1  22234566 455 79999999993


Q ss_pred             --------------c--hhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC-CCceEec
Q 044593           98 --------------I--LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ-DFDILCT  146 (335)
Q Consensus        98 --------------~--~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~-~~~~v~~  146 (335)
                                    .  ....++++++. +. .++++++.+++.-......+.+..+. ..++++.
T Consensus        82 ~p~~~g~~r~d~~~~~~~i~~~i~~~i~-~~-~~~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~  145 (317)
T 2ewd_A           82 IPGRPKDDRSELLFGNARILDSVAEGVK-KY-CPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGM  145 (317)
T ss_dssp             CSSCCSSCGGGGHHHHHHHHHHHHHHHH-HH-CTTSEEEECCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred             CCCCCCCcHHHHHHhhHHHHHHHHHHHH-HH-CCCcEEEEeCChHHHHHHHHHHhhCCCHHHEEec
Confidence                          2  22567777774 33 46888887765433334455544321 2356654

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=98.73  E-value=1.3e-08  Score=95.96  Aligned_cols=108  Identities=15%  Similarity=0.208  Sum_probs=78.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.++..|++|.+||+.....  ..+.++. ..++++++ ++||+|++++|... +..++.
T Consensus       138 ~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~--~~~~~~~-~~~l~ell-~~sDivslh~Plt~~T~~li~  213 (334)
T 3kb6_A          138 ELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED--LKEKGCV-YTSLDELL-KESDVISLHVPYTKETHHMIN  213 (334)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHTTCE-ECCHHHHH-HHCSEEEECCCCCTTTTTCBC
T ss_pred             eecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchh--hhhcCce-ecCHHHHH-hhCCEEEEcCCCChhhccCcC
Confidence            3467899999999999999999999999999999876532  3344544 45788888 89999999999764 333333


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      .-....+++++++++++-..-.-.+++.+.+..
T Consensus       214 ~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~  246 (334)
T 3kb6_A          214 EERISLMKDGVYLINTARGKVVDTDALYRAYQR  246 (334)
T ss_dssp             HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred             HHHHhhcCCCeEEEecCccccccHHHHHHHHHh
Confidence            211235789999999976544444555555543

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.73  E-value=4.8e-08  Score=91.00  Aligned_cols=90  Identities=18%  Similarity=0.265  Sum_probs=64.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHHH-HHhC---------CCce-ecChhhHhhcCCCEEEEecC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPAV-RQQL---------NAPF-FADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~~-a~~~---------g~~~-~~~~~~~~~~~aDvVIlavp   97 (335)
                      +|||+|||+|.||+++|..|..+|  ++|+++|++++..+. +.+.         .+.. .++. +.+ +++|+||+|+|
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~-~~aDvViiav~   78 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AAL-ADADVVISTLG   78 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGG-TTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHh-CCCCEEEEecC
Confidence            379999999999999999999999  799999999765432 2221         1233 4566 455 79999999999


Q ss_pred             chh--------------------HHHHHhhccccccCCccEEEEcCC
Q 044593           98 ILS--------------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~~--------------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...                    +.++++.+. +. .++++|+.++.
T Consensus        79 ~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~-~~-~~~~~ii~~tN  123 (309)
T 1hyh_A           79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLK-ES-GFHGVLVVISN  123 (309)
T ss_dssp             CGGGTC-------CTTHHHHHHHHHHHHHHHH-HT-TCCSEEEECSS
T ss_pred             CcccCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HH-CCCcEEEEEcC
Confidence            765                    356666664 33 35666665543

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.71  E-value=1.8e-08  Score=99.13  Aligned_cols=101  Identities=10%  Similarity=0.142  Sum_probs=77.8

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH--HHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST--QSVL  105 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~--~~vl  105 (335)
                      ...+++|+|||+|.||.++|+.++..|++|++||+++.....+...|+.. .++++++ .++|+|++++....+  .+.+
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell-~~aDiVi~~~~t~~lI~~~~l  331 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIV-DKGDFFITCTGNVDVIKLEHL  331 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHT-TTCSEEEECCSSSSSBCHHHH
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHH-hcCCEEEECCChhhhcCHHHH
Confidence            35688999999999999999999999999999999986543456667744 4788887 899999999743332  1222


Q ss_pred             hhccccccCCccEEEEcCCCCc-hHHHHHHh
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKE-FPRNLFLK  135 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~-~~~~~l~~  135 (335)
                           ..+++|++|+|+++... .-.+.+.+
T Consensus       332 -----~~MK~gailiNvgrg~~EId~~aL~~  357 (479)
T 1v8b_A          332 -----LKMKNNAVVGNIGHFDDEIQVNELFN  357 (479)
T ss_dssp             -----TTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             -----hhcCCCcEEEEeCCCCccccchhhhc
Confidence                 34789999999998766 34566655

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.65  E-value=2.2e-08  Score=98.85  Aligned_cols=92  Identities=10%  Similarity=0.128  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH--HHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST--QSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~--~~vl~  106 (335)
                      ..+++|+|||+|.||..+|+.++..|++|++||+++.....+...|+.. .++++++ .++|+|++++....+  .+.+ 
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell-~~aDiVi~~~~t~~lI~~~~l-  351 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAA-DKADIFVTATGNYHVINHDHM-  351 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHT-TTCSEEEECSSSSCSBCHHHH-
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHH-hcCCEEEECCCcccccCHHHH-
Confidence            5678999999999999999999999999999999986543355567654 4688887 899999999853321  2222 


Q ss_pred             hccccccCCccEEEEcCCCCc
Q 044593          107 SIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~  127 (335)
                          ..++++++|+|+++...
T Consensus       352 ----~~MK~gAilINvgrg~v  368 (494)
T 3d64_A          352 ----KAMRHNAIVCNIGHFDS  368 (494)
T ss_dssp             ----HHCCTTEEEEECSSSSC
T ss_pred             ----hhCCCCcEEEEcCCCcc
Confidence                34679999999987654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.64  E-value=7.5e-08  Score=90.18  Aligned_cols=89  Identities=16%  Similarity=0.274  Sum_probs=62.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHH-hC--------CCce-ecChhhHhhcCCCEEEEecCch
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQ-QL--------NAPF-FADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~-~~--------g~~~-~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      |||+|||+|.||++++..|...|+  +|+++|++++..+... +.        .... .++. +.+ +++|+||+|+|..
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~-~~~-~~aDvViiav~~~   78 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY-ADL-KGSDVVIVAAGVP   78 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG-GGG-TTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCH-HHh-CCCCEEEEccCCC
Confidence            699999999999999999999999  9999999976543221 11        1111 2343 345 7999999999964


Q ss_pred             h----------------HHHHHhhccccccCCccEEEEcCC
Q 044593          100 S----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 ~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .                +.++++.+. +. .++++|+.+++
T Consensus        79 ~~~g~~r~dl~~~n~~i~~~i~~~i~-~~-~~~~~ii~~tN  117 (319)
T 1a5z_A           79 QKPGETRLQLLGRNARVMKEIARNVS-KY-APDSIVIVVTN  117 (319)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHH-HH-CTTCEEEECSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHH-hh-CCCeEEEEeCC
Confidence            3                356666664 33 46667666644

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.64  E-value=7.9e-08  Score=89.56  Aligned_cols=91  Identities=18%  Similarity=0.287  Sum_probs=63.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHH--hCCC------c--eecChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQ--QLNA------P--FFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~--~~g~------~--~~~~~~~~~~~~aDvVIlav   96 (335)
                      ++|||+|||+|.||+.+|..|...|+  +|+++|++++..+ .+.  ..+.      .  ..++.+ .+ .++|+||+|+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~aD~Vii~v   83 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-IC-RDADMVVITA   83 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG-GG-TTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHH-Hh-CCCCEEEECC
Confidence            46899999999999999999999998  9999999975443 111  1222      1  122443 44 7899999999


Q ss_pred             CchhH----------------HHHHhhccccccCCccEEEEcCC
Q 044593           97 SILST----------------QSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        97 p~~~~----------------~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +....                .++++.+. + ..++++|+.++.
T Consensus        84 ~~~~~~g~~r~~~~~~n~~~~~~~~~~i~-~-~~~~~~vi~~~N  125 (319)
T 1lld_A           84 GPRQKPGQSRLELVGATVNILKAIMPNLV-K-VAPNAIYMLITN  125 (319)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHH-H-HCTTSEEEECCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHH-H-hCCCceEEEecC
Confidence            54432                26677774 3 367778877654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.63  E-value=6.1e-09  Score=94.55  Aligned_cols=115  Identities=16%  Similarity=0.136  Sum_probs=77.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      .. +|+|||+|.||.+++..|.+.|. +|++++|+++..+ .+.+.+.....++.+.+ .++|+||.|||...... ...
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~-~~aDiVInatp~gm~p~-~~~  184 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVV-KKAKSLFNTTSVGMKGE-ELP  184 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHH-HTCSEEEECSSTTTTSC-CCS
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhh-cCCCEEEECCCCCCCCC-CCC
Confidence            45 99999999999999999999998 8999999976543 22222322334555656 78999999999653221 112


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhCCCCCc-eEeccccC
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFD-ILCTHPMF  150 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~-~v~~HPma  150 (335)
                      +....++++.+|+|+....+..++..++   .+.+ .+.+.||.
T Consensus       185 i~~~~l~~~~~V~Divy~~T~ll~~A~~---~G~~~~~~Gl~ML  225 (253)
T 3u62_A          185 VSDDSLKNLSLVYDVIYFDTPLVVKARK---LGVKHIIKGNLMF  225 (253)
T ss_dssp             CCHHHHTTCSEEEECSSSCCHHHHHHHH---HTCSEEECTHHHH
T ss_pred             CCHHHhCcCCEEEEeeCCCcHHHHHHHH---CCCcEEECCHHHH
Confidence            2223467889999986554444444443   2455 66666665

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.62  E-value=1.1e-07  Score=79.18  Aligned_cols=94  Identities=15%  Similarity=0.176  Sum_probs=65.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-hCCCcee-c---Chhh---H-hhcCCCEEEEecCchh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-QLNAPFF-A---DLND---L-CELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-~~g~~~~-~---~~~~---~-~~~~aDvVIlavp~~~  100 (335)
                      ..++|.|+|+|.+|..++..|.+.|++|+++|++++..+.+. +.|.... .   +.+.   . + .++|+||+|+|...
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~-~~ad~Vi~~~~~~~   96 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGM-EKADMVFAFTNDDS   96 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTG-GGCSEEEECSSCHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCc-ccCCEEEEEeCCcH
Confidence            468999999999999999999999999999999987766555 5565322 1   2221   1 3 57999999999877


Q ss_pred             HHHHHhhccccccCCccEEEEcCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ....+..+.....+...+|+.+.+
T Consensus        97 ~~~~~~~~~~~~~~~~~iv~~~~~  120 (155)
T 2g1u_A           97 TNFFISMNARYMFNVENVIARVYD  120 (155)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEECSS
T ss_pred             HHHHHHHHHHHHCCCCeEEEEECC
Confidence            655444442111233345555544

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.61  E-value=1e-07  Score=85.17  Aligned_cols=82  Identities=17%  Similarity=0.329  Sum_probs=64.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhccc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPF  110 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~  110 (335)
                      |||+|||+|.||..++..|.+.|+++ .+||+++.. +   +    .+.++++++..++|+||+|+|+....+++...  
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~-~---~----~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~--   70 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEH-E---K----MVRGIDEFLQREMDVAVEAASQQAVKDYAEKI--   70 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCC-T---T----EESSHHHHTTSCCSEEEECSCHHHHHHHHHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcch-h---h----hcCCHHHHhcCCCCEEEECCCHHHHHHHHHHH--
Confidence            68999999999999999999889997 689998632 1   1    55677777523799999999998777766543  


Q ss_pred             cccCCccEEEEcCCC
Q 044593          111 QRLKRSTLFVDVLSV  125 (335)
Q Consensus       111 ~~l~~~~iVvd~~Sv  125 (335)
                        ++.|..|++.++.
T Consensus        71 --l~~G~~vv~~~~~   83 (236)
T 2dc1_A           71 --LKAGIDLIVLSTG   83 (236)
T ss_dssp             --HHTTCEEEESCGG
T ss_pred             --HHCCCcEEEECcc
Confidence              5578888887543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.61  E-value=1.1e-07  Score=77.68  Aligned_cols=94  Identities=15%  Similarity=0.018  Sum_probs=64.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecChhhHh---hcCCCEEEEecCchhHH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADLNDLC---ELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~~~~~---~~~aDvVIlavp~~~~~  102 (335)
                      .+++|.|+|+|.+|..++..|.+.|++|+++|++++..+.+.+.|+..    .++.+.+.   ..++|+||+++|.....
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n   84 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFN   84 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHH
Confidence            467899999999999999999999999999999998777677777642    12322221   15799999999976544


Q ss_pred             HHHhhccccccCCccEEEEcCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..+.... ..+....+|+-+.+
T Consensus        85 ~~~~~~a-~~~~~~~iia~~~~  105 (141)
T 3llv_A           85 LKILKAL-RSVSDVYAIVRVSS  105 (141)
T ss_dssp             HHHHHHH-HHHCCCCEEEEESC
T ss_pred             HHHHHHH-HHhCCceEEEEEcC
Confidence            3333332 12334455555543

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.60  E-value=6.2e-08  Score=93.84  Aligned_cols=101  Identities=11%  Similarity=0.139  Sum_probs=76.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-h
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK-S  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~-~  107 (335)
                      ..+++|+|||+|.||..+|..|+..|.+|+++|+++.....+...|+.. .++++++ .++|+|++++....+   +. +
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal-~~ADVVilt~gt~~i---I~~e  283 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVV-EEAHIFVTTTGNDDI---ITSE  283 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHT-TTCSEEEECSSCSCS---BCTT
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHH-hhCCEEEECCCCcCc---cCHH
Confidence            3578999999999999999999999999999999986655566777654 4788888 899999987764332   22 2


Q ss_pred             ccccccCCccEEEEcCCCCc-hHHHHHHh
Q 044593          108 IPFQRLKRSTLFVDVLSVKE-FPRNLFLK  135 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~-~~~~~l~~  135 (335)
                      . ...++++++|++++.... .-.+.+.+
T Consensus       284 ~-l~~MK~gAIVINvgRg~vEID~~~L~~  311 (436)
T 3h9u_A          284 H-FPRMRDDAIVCNIGHFDTEIQVAWLKA  311 (436)
T ss_dssp             T-GGGCCTTEEEEECSSSGGGBCHHHHHH
T ss_pred             H-HhhcCCCcEEEEeCCCCCccCHHHHHh
Confidence            2 245789999999986543 22344443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.60  E-value=4e-08  Score=93.86  Aligned_cols=89  Identities=15%  Similarity=0.140  Sum_probs=69.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec-------------------------ChhhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA-------------------------DLNDL   84 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~-------------------------~~~~~   84 (335)
                      ...||+|||+|.||...++.++..|.+|+++|++++..+.+.+.|..+..                         ++.+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~  262 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDA  262 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHH
Confidence            46799999999999999999999999999999999888778877764321                         33455


Q ss_pred             hhcCCCEEEEec--Cchh-----HHHHHhhccccccCCccEEEEcCC
Q 044593           85 CELHPDVVLLST--SILS-----TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        85 ~~~~aDvVIlav--p~~~-----~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      + .++|+||.++  |...     ..+.++     .+++|.+|+|++.
T Consensus       263 l-~~aDIVI~tv~iPg~~ap~Lvt~emv~-----~MkpGsVIVDvA~  303 (381)
T 3p2y_A          263 I-TKFDIVITTALVPGRPAPRLVTAAAAT-----GMQPGSVVVDLAG  303 (381)
T ss_dssp             H-TTCSEEEECCCCTTSCCCCCBCHHHHH-----TSCTTCEEEETTG
T ss_pred             H-hcCCEEEECCCCCCcccceeecHHHHh-----cCCCCcEEEEEeC
Confidence            6 7999999986  4322     234333     4668999999974

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.59  E-value=2.3e-07  Score=87.24  Aligned_cols=91  Identities=14%  Similarity=0.177  Sum_probs=64.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHH-HHh----------C-CCceecChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAV-RQQ----------L-NAPFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~-a~~----------~-g~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      +.+||+|||+|.||..+|..|+..|+ +|++||++++..+. +.+          . .+..+++. +.+ ++||+||+++
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al-~~aD~VI~av   90 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYL-QNSDVVIITA   90 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGG-TTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHH-CCCCEEEEcC
Confidence            34799999999999999999999998 99999999875542 111          0 12344666 445 7999999998


Q ss_pred             --Cc--------------hhHHHHHhhccccccCCccEEEEcCC
Q 044593           97 --SI--------------LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        97 --p~--------------~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                        |.              ....++++++. +. .++++++.+++
T Consensus        91 g~p~k~g~tr~dl~~~n~~i~~~i~~~i~-~~-~p~a~viv~tN  132 (328)
T 2hjr_A           91 GVPRKPNMTRSDLLTVNAKIVGSVAENVG-KY-CPNAFVICITN  132 (328)
T ss_dssp             SCCCCTTCCSGGGHHHHHHHHHHHHHHHH-HH-CTTCEEEECCS
T ss_pred             CCCCCCCCchhhHHhhhHHHHHHHHHHHH-HH-CCCeEEEEecC
Confidence              42              11455666664 33 46777766544

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.59  E-value=1.6e-07  Score=80.24  Aligned_cols=72  Identities=13%  Similarity=0.163  Sum_probs=57.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHhCCCcee----cChh---hH--hhcCCCEEEEecCc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQLNAPFF----ADLN---DL--CELHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~~~g~~~~----~~~~---~~--~~~~aDvVIlavp~   98 (335)
                      ...++|+|+|+|.||..++..|.+. |++|+++|++++..+.+.+.|+...    ++.+   ++  + .++|+||+|+|.
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~-~~ad~vi~~~~~  115 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDT-GHVKLVLLAMPH  115 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSC-CCCCEEEECCSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCC-CCCCEEEEeCCC
Confidence            3467999999999999999999999 9999999999987776777787532    2222   22  3 579999999997


Q ss_pred             hhH
Q 044593           99 LST  101 (335)
Q Consensus        99 ~~~  101 (335)
                      ...
T Consensus       116 ~~~  118 (183)
T 3c85_A          116 HQG  118 (183)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            654

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=98.59  E-value=4.2e-06  Score=75.73  Aligned_cols=116  Identities=13%  Similarity=0.149  Sum_probs=91.1

Q ss_pred             CCceecChhhHhhcCCCEEEEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCC
Q 044593           74 NAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFG  151 (335)
Q Consensus        74 g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG  151 (335)
                      |+..++|..+++ +++|++|+-+|... ..++++.+. +++++|++|+++|++.+.....+-+.+. +++.+.+.||-+-
T Consensus       128 GVkVtsDD~EAv-k~AEi~IlftPfG~~t~~Iakkii-~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPaaV  205 (358)
T 2b0j_A          128 GLKVTSDDREAV-EGADIVITWLPKGNKQPDIIKKFA-DAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGCV  205 (358)
T ss_dssp             TCEEESCHHHHH-TTCSEEEECCTTCTTHHHHHHHHG-GGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSSC
T ss_pred             CcEeecchHHHh-cCCCEEEEecCCCCCcHHHHHHHH-hhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence            666778878887 89999999999987 788999985 7899999999999988766655544454 4588999999888


Q ss_pred             CCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeChHH
Q 044593          152 PESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMSCFD  202 (335)
Q Consensus       152 ~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~e  202 (335)
                      |+.     +|+.+.-      ..-.++++++++.+|.++.|..++.+.++-
T Consensus       206 Pgt-----~Gq~~~g------~~yAtEEqIeklveLaksa~k~ay~vPAdl  245 (358)
T 2b0j_A          206 PEM-----KGQVYIA------EGYASEEAVNKLYEIGKIARGKAFKMPANL  245 (358)
T ss_dssp             TTT-----CCCEEEE------ESSSCHHHHHHHHHHHHHHHSCEEEEEHHH
T ss_pred             CCC-----CCccccc------cccCCHHHHHHHHHHHHHhCCCeEecchhh
Confidence            875     3443221      122346789999999999999999999753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.58  E-value=1.5e-07  Score=77.25  Aligned_cols=73  Identities=12%  Similarity=0.106  Sum_probs=57.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee----cChhhHh---hcCCCEEEEecCchhHH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF----ADLNDLC---ELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~----~~~~~~~---~~~aDvVIlavp~~~~~  102 (335)
                      ..++|.|+|+|.+|..++..|.+.|++|+++|++++..+.+.+.|+...    ++.+.+.   ..++|+||+++|.+...
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n   85 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEA   85 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHH
Confidence            4568999999999999999999999999999999988877777787532    2222211   15799999999987643

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.58  E-value=2.1e-07  Score=87.66  Aligned_cols=92  Identities=14%  Similarity=0.152  Sum_probs=66.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHH-HHh-------CC----CceecChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAV-RQQ-------LN----APFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~-a~~-------~g----~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      +.|||+|||+|.||..+|..|...|+ +|++||++++..+. +.+       .+    +..++++.+.+ ++||+||+++
T Consensus         8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~-~~aDiVi~a~   86 (331)
T 1pzg_A            8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL-TGADCVIVTA   86 (331)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH-TTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHh-CCCCEEEEcc
Confidence            35799999999999999999999998 99999999875543 111       11    22356777566 8999999998


Q ss_pred             --Cch-------------------hHHHHHhhccccccCCccEEEEcCC
Q 044593           97 --SIL-------------------STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        97 --p~~-------------------~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                        |..                   .+.++.+.+. . ..++++++.++.
T Consensus        87 g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~-~-~~p~a~vi~~tN  133 (331)
T 1pzg_A           87 GLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIK-K-YCPKTFIIVVTN  133 (331)
T ss_dssp             SCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHH-H-HCTTCEEEECCS
T ss_pred             CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHH-H-HCCCcEEEEEcC
Confidence              531                   1456666664 3 347777776644

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.56  E-value=9.2e-08  Score=88.74  Aligned_cols=80  Identities=14%  Similarity=0.281  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEcccHHHHH-HHHHHHH-cCCeEE-EEcCCCCcH-HHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           28 KSTSLKIAVIGFGNFGQF-LAKAFAR-HHHTLL-VHSRSDHSP-AVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~s-iA~~L~~-~G~~V~-~~dr~~~~~-~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      .|+++||+|||+|.||.. ++..|.+ .+++++ ++|++++.. +.+.+.|+..+++.++++ +++|+|++|+|.....+
T Consensus         3 ~M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll-~~~D~V~i~tp~~~h~~   81 (308)
T 3uuw_A            3 AMKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLA-KKCDCIFLHSSTETHYE   81 (308)
T ss_dssp             --CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHH-TTCSEEEECCCGGGHHH
T ss_pred             ccccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHH-hcCCEEEEeCCcHhHHH
Confidence            456789999999999996 8888887 467776 789998765 445566887788899988 69999999999998777


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      ++...
T Consensus        82 ~~~~a   86 (308)
T 3uuw_A           82 IIKIL   86 (308)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.56  E-value=2.4e-07  Score=86.12  Aligned_cols=110  Identities=14%  Similarity=0.231  Sum_probs=69.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC--C------Ccee-cChhhHhhcCCCEEEEecCch
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL--N------APFF-ADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~--g------~~~~-~~~~~~~~~~aDvVIlavp~~   99 (335)
                      |||+|||+|.||+++|..|...|+  +|+++|++++..+ .+.+.  +      .... ++.+ .+ ++||+||++++..
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~-a~-~~aDvVIi~~~~~   78 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHS-EL-ADAQVVILTAGAN   78 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGG-GG-TTCSEEEECC---
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHH-Hh-CCCCEEEEcCCCC
Confidence            699999999999999999999998  9999999976433 12221  1      1121 3443 44 7999999999543


Q ss_pred             h----------------HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEec
Q 044593          100 S----------------TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCT  146 (335)
Q Consensus       100 ~----------------~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~  146 (335)
                      .                +.++++++. +. .++++|+.++..-......+.+..+. .+++++
T Consensus        79 ~~~g~~r~dl~~~n~~i~~~i~~~i~-~~-~p~~~vi~~tNP~~~~~~~~~~~~~~-~rviG~  138 (304)
T 2v6b_A           79 QKPGESRLDLLEKNADIFRELVPQIT-RA-APDAVLLVTSNPVDLLTDLATQLAPG-QPVIGS  138 (304)
T ss_dssp             ---------CHHHHHHHHHHHHHHHH-HH-CSSSEEEECSSSHHHHHHHHHHHSCS-SCEEEC
T ss_pred             CCCCCcHHHHHHhHHHHHHHHHHHHH-Hh-CCCeEEEEecCchHHHHHHHHHhCCh-hcEEeC
Confidence            2                256666664 33 57777776654333333445555543 355543

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.55  E-value=4.7e-07  Score=84.41  Aligned_cols=89  Identities=21%  Similarity=0.318  Sum_probs=61.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHH---hCC---------CceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQ---QLN---------APFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~---~~g---------~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |||+|||+|.||.++|..|...  |++|+++|++++..+...   ..+         +..+++.++ + ++||+||+|+|
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l-~~aDvViiav~   78 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-T-ANSDIVIITAG   78 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-G-TTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-H-CCCCEEEEeCC
Confidence            6999999999999999999985  789999999987554211   111         223456666 5 79999999997


Q ss_pred             chh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           98 ILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...                +.++.+.+. +. .++++|+.+++
T Consensus        79 ~p~~~g~~r~dl~~~n~~i~~~i~~~i~-~~-~~~~~viv~tN  119 (310)
T 1guz_A           79 LPRKPGMTREDLLMKNAGIVKEVTDNIM-KH-SKNPIIIVVSN  119 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHH-HH-CSSCEEEECCS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHH-Hh-CCCcEEEEEcC
Confidence            531                234445553 33 46666666643

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.55  E-value=9.9e-08  Score=90.31  Aligned_cols=82  Identities=20%  Similarity=0.253  Sum_probs=65.3

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHc--CCeEE-EEcCCCCcH-HHHHhCCCceecChhhHhh-cCCCEEEEecCchhH
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARH--HHTLL-VHSRSDHSP-AVRQQLNAPFFADLNDLCE-LHPDVVLLSTSILST  101 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~--G~~V~-~~dr~~~~~-~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~  101 (335)
                      ..++++||+|||+|.||..++..+.+.  +++++ ++|++++.. +.+.+.|+..+++.++++. .++|+|++|||+...
T Consensus         9 ~~~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   88 (354)
T 3q2i_A            9 ITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLH   88 (354)
T ss_dssp             CCSSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGH
T ss_pred             CCCCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHH
Confidence            344678999999999999999999987  67764 789998765 4456678877889988872 379999999999987


Q ss_pred             HHHHhhc
Q 044593          102 QSVLKSI  108 (335)
Q Consensus       102 ~~vl~~l  108 (335)
                      .+++...
T Consensus        89 ~~~~~~a   95 (354)
T 3q2i_A           89 PTQSIEC   95 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666544

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.54  E-value=1.3e-07  Score=89.89  Aligned_cols=80  Identities=14%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CCeEE-EEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecCchhHHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HHTLL-VHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~vl  105 (335)
                      |+.+||+|||+|.||...+..+.+. +++|+ ++|++++..+.+.+.|+..+++.++++. .+.|+|++|||.....+++
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   82 (359)
T 3e18_A            3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELA   82 (359)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred             CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence            4567999999999999999999876 66775 6799987777677889888889998872 2799999999999876666


Q ss_pred             hhc
Q 044593          106 KSI  108 (335)
Q Consensus       106 ~~l  108 (335)
                      ...
T Consensus        83 ~~a   85 (359)
T 3e18_A           83 ISA   85 (359)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.53  E-value=3.8e-07  Score=85.22  Aligned_cols=91  Identities=20%  Similarity=0.275  Sum_probs=69.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-C-CeEEEEcCCCCcHHHHHh----CCCc--eecChhhHhhcCCCEEEEecCchh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-H-HTLLVHSRSDHSPAVRQQ----LNAP--FFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G-~~V~~~dr~~~~~~~a~~----~g~~--~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ...++|+|||+|.||.+++.+|.+. + .+|.+|||+ ...+.+.+    .|+.  .. ++++++ .++|+||.|||...
T Consensus       119 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav-~~aDIVi~aT~s~~  195 (313)
T 3hdj_A          119 PRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIA-AQADIVVTATRSTT  195 (313)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHH-HHCSEEEECCCCSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHH-hhCCEEEEccCCCC
Confidence            3567999999999999999999874 3 589999999 65554443    3653  34 788887 78999999999753


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCc
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                        .++.   ...+++|++|++++|.+.
T Consensus       196 --pvl~---~~~l~~G~~V~~vGs~~p  217 (313)
T 3hdj_A          196 --PLFA---GQALRAGAFVGAIGSSLP  217 (313)
T ss_dssp             --CSSC---GGGCCTTCEEEECCCSST
T ss_pred             --cccC---HHHcCCCcEEEECCCCCC
Confidence              2222   245889999999998765

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.52  E-value=1e-07  Score=91.77  Aligned_cols=89  Identities=20%  Similarity=0.217  Sum_probs=68.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-----------------------------cC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-----------------------------AD   80 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-----------------------------~~   80 (335)
                      ...||+|||+|.||...++.++..|.+|+++|+++...+.+.+.|..+.                             .+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~  268 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAAL  268 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhH
Confidence            4679999999999999999999999999999999988777777776421                             13


Q ss_pred             hhhHhhcCCCEEEEec--Cchh-----HHHHHhhccccccCCccEEEEcCC
Q 044593           81 LNDLCELHPDVVLLST--SILS-----TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        81 ~~~~~~~~aDvVIlav--p~~~-----~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +.+++ .++|+||.|+  |...     ..+.++     .+++|.+|+|++.
T Consensus       269 l~e~l-~~aDVVI~tvlipg~~ap~Lvt~emv~-----~Mk~GsVIVDvA~  313 (405)
T 4dio_A          269 VAEHI-AKQDIVITTALIPGRPAPRLVTREMLD-----SMKPGSVVVDLAV  313 (405)
T ss_dssp             HHHHH-HTCSEEEECCCCSSSCCCCCBCHHHHT-----TSCTTCEEEETTG
T ss_pred             HHHHh-cCCCEEEECCcCCCCCCCEEecHHHHh-----cCCCCCEEEEEeC
Confidence            44555 7999999985  4322     233333     4679999999974

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.52  E-value=3.4e-07  Score=85.27  Aligned_cols=88  Identities=24%  Similarity=0.350  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHHc-CCeEE-EEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           29 STSLKIAVIGFGNFGQF-LAKAFARH-HHTLL-VHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~s-iA~~L~~~-G~~V~-~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      |+++||+|||+|.||.. ++..+.+. +++++ ++|++++..+ .+.+.|+..+++.+++. .++|+|++|+|.....++
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~-~~~D~V~i~tp~~~h~~~   81 (319)
T 1tlt_A            3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLA-ASCDAVFVHSSTASHFDV   81 (319)
T ss_dssp             --CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHH-TTCSEEEECSCTTHHHHH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhh-cCCCEEEEeCCchhHHHH
Confidence            45689999999999996 88888764 67765 8899987654 45556777667777774 789999999999877666


Q ss_pred             HhhccccccCCcc-EEEE
Q 044593          105 LKSIPFQRLKRST-LFVD  121 (335)
Q Consensus       105 l~~l~~~~l~~~~-iVvd  121 (335)
                      +...    ++.|. ++++
T Consensus        82 ~~~a----l~~G~~v~~e   95 (319)
T 1tlt_A           82 VSTL----LNAGVHVCVD   95 (319)
T ss_dssp             HHHH----HHTTCEEEEE
T ss_pred             HHHH----HHcCCeEEEe
Confidence            6554    23444 5555

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.51  E-value=2.9e-07  Score=86.21  Aligned_cols=76  Identities=16%  Similarity=0.303  Sum_probs=62.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc-CCeEE-EEcCCCCcH-HHHHhCCCceecChhhHhhc--CCCEEEEecCchhHHHHH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH-HHTLL-VHSRSDHSP-AVRQQLNAPFFADLNDLCEL--HPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~-G~~V~-~~dr~~~~~-~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp~~~~~~vl  105 (335)
                      ++||+|||+|.||..++..|.+. +++++ ++|++++.. +.+.+.|+. +++.++++ .  ++|+|++|||+....+++
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~D~V~i~tp~~~h~~~~   80 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIE-AAADIDAVVICTPTDTHADLI   80 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHH-HCTTCCEEEECSCGGGHHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHh-cCCCCCEEEEeCCchhHHHHH
Confidence            57999999999999999999985 67775 689998764 456677888 88888887 4  799999999999877766


Q ss_pred             hhc
Q 044593          106 KSI  108 (335)
Q Consensus       106 ~~l  108 (335)
                      ...
T Consensus        81 ~~a   83 (331)
T 4hkt_A           81 ERF   83 (331)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.50  E-value=8.6e-08  Score=90.97  Aligned_cols=95  Identities=16%  Similarity=0.139  Sum_probs=69.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHH-cC-CeEEEEcCCCCcHH-HHHhC----CC--ceecChhhHhhcCCCEEEEecCch
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFAR-HH-HTLLVHSRSDHSPA-VRQQL----NA--PFFADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~-~G-~~V~~~dr~~~~~~-~a~~~----g~--~~~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      ...++|+|||+|.||.+++.+|.. .+ .+|.+|||+++..+ .+.+.    |+  ....+..+++ .++|+||.|||..
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav-~~aDiVi~aTps~  205 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAV-KGVDIITTVTADK  205 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHH-TTCSEEEECCCCS
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHH-hcCCEEEEeccCC
Confidence            356799999999999999998864 33 58999999987653 33332    53  3456777877 7899999999986


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCCc
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                      ....++.   ...+++|+.|+++++.+.
T Consensus       206 ~~~pvl~---~~~l~~G~~V~~vgs~~p  230 (350)
T 1x7d_A          206 AYATIIT---PDMLEPGMHLNAVGGDCP  230 (350)
T ss_dssp             SEEEEEC---GGGCCTTCEEEECSCCBT
T ss_pred             CCCceec---HHHcCCCCEEEECCCCCC
Confidence            3222222   135789999999998653

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.50  E-value=3e-07  Score=86.56  Aligned_cols=78  Identities=15%  Similarity=0.239  Sum_probs=64.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc-CCeEE-EEcCCCCcH-HHHHhCCCceecChhhHhhc--CCCEEEEecCchhHHHH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH-HHTLL-VHSRSDHSP-AVRQQLNAPFFADLNDLCEL--HPDVVLLSTSILSTQSV  104 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~-G~~V~-~~dr~~~~~-~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp~~~~~~v  104 (335)
                      +++||+|||+|.||..++..|.+. +++|+ ++|++++.. +.+.+.|+..+++.++++ .  ++|+|++|+|.....++
T Consensus         3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l-~~~~~D~V~i~tp~~~h~~~   81 (344)
T 3euw_A            3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVF-ARDDIDGIVIGSPTSTHVDL   81 (344)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHT-TCSCCCEEEECSCGGGHHHH
T ss_pred             CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHh-cCCCCCEEEEeCCchhhHHH
Confidence            357999999999999999999986 66765 789998765 446667877788999887 5  79999999999987776


Q ss_pred             Hhhc
Q 044593          105 LKSI  108 (335)
Q Consensus       105 l~~l  108 (335)
                      +...
T Consensus        82 ~~~a   85 (344)
T 3euw_A           82 ITRA   85 (344)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.48  E-value=4.3e-08  Score=90.05  Aligned_cols=95  Identities=18%  Similarity=0.142  Sum_probs=64.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCc--eecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAP--FFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~--~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      ..+++.|||+|.+|.+++..|.+.|+ +|++++|+++..+...+ ++.  ...+..+.+ .++|+||.|||......+-.
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~-~~~~~~~~~~~~~~-~~aDiVInaTp~Gm~~~~~~  193 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL-NINKINLSHAESHL-DEFDIIINTTPAGMNGNTDS  193 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS-CCEEECHHHHHHTG-GGCSEEEECCC-------CC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-hcccccHhhHHHHh-cCCCEEEECccCCCCCCCcC
Confidence            46799999999999999999999998 89999999865432211 221  123344545 68999999999864333211


Q ss_pred             hccccccCCccEEEEcCCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK  126 (335)
                      .+....++++.+|+|+....
T Consensus       194 ~l~~~~l~~~~~V~D~vY~P  213 (277)
T 3don_A          194 VISLNRLASHTLVSDIVYNP  213 (277)
T ss_dssp             SSCCTTCCSSCEEEESCCSS
T ss_pred             CCCHHHcCCCCEEEEecCCC
Confidence            12224578999999997553

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.48  E-value=3.5e-08  Score=92.37  Aligned_cols=71  Identities=14%  Similarity=0.203  Sum_probs=50.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHH-HHh----C-----CCceecChhhHhhcCCCEEEEec
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPAV-RQQ----L-----NAPFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~-a~~----~-----g~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      .+.+||+|||+|.||++++..++..|.  +|+++|++++..+. +.+    .     .+....+..+.+ ++||+||+|+
T Consensus         4 ~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al-~~aDvViia~   82 (316)
T 1ldn_A            4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDC-RDADLVVICA   82 (316)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGT-TTCSEEEECC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHh-CCCCEEEEcC
Confidence            356899999999999999999998875  89999999753321 111    1     111222333445 7999999998


Q ss_pred             Cchh
Q 044593           97 SILS  100 (335)
Q Consensus        97 p~~~  100 (335)
                      |...
T Consensus        83 ~~~~   86 (316)
T 1ldn_A           83 GANQ   86 (316)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            7654

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.48  E-value=2.9e-07  Score=86.29  Aligned_cols=79  Identities=11%  Similarity=0.195  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CCeEE-EEcCCCCcH-HHHHhCCC-ceecChhhHhhc--CCCEEEEecCchhHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HHTLL-VHSRSDHSP-AVRQQLNA-PFFADLNDLCEL--HPDVVLLSTSILSTQ  102 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V~-~~dr~~~~~-~~a~~~g~-~~~~~~~~~~~~--~aDvVIlavp~~~~~  102 (335)
                      |+++||+|||+|.||..++..|.+. +++|+ ++|++++.. +.+.+.|+ ..+++.++++ .  ++|+|++|||.....
T Consensus         3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~   81 (330)
T 3e9m_A            3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELC-KDETIDIIYIPTYNQGHY   81 (330)
T ss_dssp             CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHH-HCTTCSEEEECCCGGGHH
T ss_pred             CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHh-cCCCCCEEEEcCCCHHHH
Confidence            4568999999999999999999985 56765 679998764 45566787 4678888887 4  799999999999877


Q ss_pred             HHHhhc
Q 044593          103 SVLKSI  108 (335)
Q Consensus       103 ~vl~~l  108 (335)
                      +++...
T Consensus        82 ~~~~~a   87 (330)
T 3e9m_A           82 SAAKLA   87 (330)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.47  E-value=3e-07  Score=87.07  Aligned_cols=82  Identities=12%  Similarity=0.148  Sum_probs=63.3

Q ss_pred             cCCCCCeEEEEcccHHHH-HHHHHHHHc-CCeEE-EEcCCCCcH-HHHHhCCCceecChhhHhh-cCCCEEEEecCchhH
Q 044593           27 VKSTSLKIAVIGFGNFGQ-FLAKAFARH-HHTLL-VHSRSDHSP-AVRQQLNAPFFADLNDLCE-LHPDVVLLSTSILST  101 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~-siA~~L~~~-G~~V~-~~dr~~~~~-~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~  101 (335)
                      ..|+.+||+|||+|.||. .++..|.+. +++|+ ++|++++.. +.+.+.|+..+++.++++. .+.|+|++|||....
T Consensus        23 ~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h  102 (350)
T 3rc1_A           23 ANANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLH  102 (350)
T ss_dssp             ---CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGH
T ss_pred             CCCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHH
Confidence            446678999999999998 789999887 67765 779997654 4456678887788888872 268999999999987


Q ss_pred             HHHHhhc
Q 044593          102 QSVLKSI  108 (335)
Q Consensus       102 ~~vl~~l  108 (335)
                      .+++...
T Consensus       103 ~~~~~~a  109 (350)
T 3rc1_A          103 AEWIDRA  109 (350)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766654

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.47  E-value=3.1e-07  Score=87.17  Aligned_cols=85  Identities=19%  Similarity=0.265  Sum_probs=62.7

Q ss_pred             hcccCCCCCeEEEEcccHHHHHHHHHHH-H-cCCeEE-EEcCCCCcHH-HHHhCC--CceecChhhHhh-cCCCEEEEec
Q 044593           24 TQYVKSTSLKIAVIGFGNFGQFLAKAFA-R-HHHTLL-VHSRSDHSPA-VRQQLN--APFFADLNDLCE-LHPDVVLLST   96 (335)
Q Consensus        24 ~~~~~~~~~kI~IIG~G~mG~siA~~L~-~-~G~~V~-~~dr~~~~~~-~a~~~g--~~~~~~~~~~~~-~~aDvVIlav   96 (335)
                      .+..+|+++||+|||+|.||..++..|. + .+++++ ++|++++..+ .+.+.|  ...+++.++++. .++|+|++||
T Consensus        16 ~~~~~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~t   95 (357)
T 3ec7_A           16 NLYFQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITA   95 (357)
T ss_dssp             ------CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECS
T ss_pred             ccccCCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcC
Confidence            4445667789999999999999999998 4 367765 7899988654 455667  557788888872 2599999999


Q ss_pred             CchhHHHHHhhc
Q 044593           97 SILSTQSVLKSI  108 (335)
Q Consensus        97 p~~~~~~vl~~l  108 (335)
                      |.....+++...
T Consensus        96 p~~~h~~~~~~a  107 (357)
T 3ec7_A           96 SNEAHADVAVAA  107 (357)
T ss_dssp             CGGGHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            999877766654

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.46  E-value=8.7e-07  Score=73.33  Aligned_cols=104  Identities=13%  Similarity=0.032  Sum_probs=72.1

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGF----GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~----G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      ..+|+|||+    |.+|..++..|.+.|++|+.++++.+.     -.|+..+.++.++. ..+|++++++|.....++++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~-----i~G~~~y~sl~~l~-~~vDlvvi~vp~~~~~~vv~   95 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE-----VLGRKCYPSVLDIP-DKIEVVDLFVKPKLTMEYVE   95 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-----ETTEECBSSGGGCS-SCCSEEEECSCHHHHHHHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCe-----ECCeeccCCHHHcC-CCCCEEEEEeCHHHHHHHHH
Confidence            568999999    799999999999999985555443221     14777778888886 68999999999999999998


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEe
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC  145 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~  145 (335)
                      ++..  ...+.+++..+.......+.+++   .+.++++
T Consensus        96 ~~~~--~gi~~i~~~~g~~~~~l~~~a~~---~Gi~vvG  129 (144)
T 2d59_A           96 QAIK--KGAKVVWFQYNTYNREASKKADE---AGLIIVA  129 (144)
T ss_dssp             HHHH--HTCSEEEECTTCCCHHHHHHHHH---TTCEEEE
T ss_pred             HHHH--cCCCEEEECCCchHHHHHHHHHH---cCCEEEc
Confidence            7742  33345665544332222222222   3566665

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.44  E-value=8.2e-07  Score=82.51  Aligned_cols=226  Identities=13%  Similarity=0.116  Sum_probs=120.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CCeEE-EEcCCCCcHHHHHhCCCce--ecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HHTLL-VHSRSDHSPAVRQQLNAPF--FADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V~-~~dr~~~~~~~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      |+.+||+|||+|.||..++..+.+. +++++ ++|++++..+.   .|+.+  ..++.+.  .++|+||+|+|.....++
T Consensus         7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~--~~~DvViiatp~~~h~~~   81 (304)
T 3bio_A            7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL--ESVDVALVCSPSREVERT   81 (304)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS--SSCCEEEECSCHHHHHHH
T ss_pred             CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC--CCCCEEEECCCchhhHHH
Confidence            5568999999999999999999874 56876 68999876542   56542  3344333  579999999999887776


Q ss_pred             HhhccccccCCccEEEEcCCC-Cch--HHHHHHhhCC-CCCceEeccccCCCCCc------ccccCCCcceecccccCCC
Q 044593          105 LKSIPFQRLKRSTLFVDVLSV-KEF--PRNLFLKYLP-QDFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGND  174 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~Sv-K~~--~~~~l~~~l~-~~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~  174 (335)
                      +...    ++.|..|++.... ...  ....+.+... .+..+..+| -+.|...      .++.-|....+. .+.++.
T Consensus        82 ~~~a----l~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~v~~-~~~p~~~~~~~~i~~g~lG~~~~~~-~~~~~~  155 (304)
T 3bio_A           82 ALEI----LKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIAS-GWDPGSDSVVRTLMQAIVPKGITYT-NFGPGM  155 (304)
T ss_dssp             HHHH----HTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEECSC-BBTTBHHHHHHHHHHHHSCEEEEEE-EECSEE
T ss_pred             HHHH----HHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEEEeC-CCCHHHHHHHHHHHCCCCCCcEEEE-EeCCCc
Confidence            6654    3456677765322 211  1112222111 132333333 2222221      011112211111 011111


Q ss_pred             hhHHHHHHHHHHHHHhc-----------------CCEEEEeChHHH---HHHHHHhhhhHHHHHHHHHHc-CCC----CC
Q 044593          175 EERIKRVDKFLDVFAKE-----------------GCRMVEMSCFDH---DKYAAGSQFVTHTMGRVLERF-GVE----SS  229 (335)
Q Consensus       175 ~~~~~~~~~v~~l~~~~-----------------G~~v~~~~~~eH---D~~~A~~s~lph~la~aL~~~-~~~----~~  229 (335)
                        .....    ..|+.+                 ..+.+++..++|   +.+.+.+++.| .++..+.+. ..+    ..
T Consensus       156 --~~~~~----~~~r~~~g~~~~~~~~~p~~~~~h~~~~~~~~~~~~~~~~v~~~i~~~p-~~~~~~~~~~~~ed~~~~~  228 (304)
T 3bio_A          156 --SMGHT----VAVKAIDGVKAALSMTIPLGTGVHRRMVYVELLPGHNLEEVSAAIKADE-YFVHDETHVIQVDEVDALI  228 (304)
T ss_dssp             --CHHHH----HHHHTSTTEEEEEEEEEECSTTCEEEEEEEEECTTCCHHHHHHHHHHST-TTTTSEEEEEECSCGGGGC
T ss_pred             --chhhH----HHHHhCcCchheEEecCCCCCCcceeeEEEEEcCCCCHHHHHHHHhcCC-ccCCceeEEEEEeeeeeee
Confidence              11111    122221                 233456666666   88999999999 544322211 111    12


Q ss_pred             CCCCcchhhHHHHHHHhhCCCh----HhHHHHHhhCHhH-HHHHHHHHHHHHHH
Q 044593          230 PINTKGYETLLDLVDNTKGDSF----DLYYGLFMYNKNS-LEQLQRLEMAFESI  278 (335)
Q Consensus       230 ~~~~~gf~~~~rl~~~ia~~~~----~lw~~I~~~N~~~-~~~l~~~~~~l~~l  278 (335)
                      .+..++|  .++.    ++.+|    .+|.+|...|+.. .+.|..|.+.+-.+
T Consensus       229 ~~~~G~~--~~~~----~s~~~~~~~~~e~~i~~~N~~~~~~~l~~~~~~~~~~  276 (304)
T 3bio_A          229 DMGHGVR--MVRK----GVSGSTQNQRMSFDMEINNPALTGQVLVCAARAAMRQ  276 (304)
T ss_dssp             CCEEEEE--EEEE----EEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHTTS
T ss_pred             ccCCceE--EEEE----ecccCcCCceEEEEEecCCHHHHHHHHHHHHHHHhhc
Confidence            3455666  3332    44566    8999999999987 58888888876655

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.42  E-value=5.8e-07  Score=74.10  Aligned_cols=106  Identities=11%  Similarity=0.099  Sum_probs=72.6

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGF----GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~----G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      ..+|+|||+    |.+|..+++.|.+.|++|+  ++|+.... ..-.|+..+.++.++. ...|++++++|...+.++++
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~--~vnp~~~~-~~i~G~~~~~sl~el~-~~vDlavi~vp~~~~~~v~~   88 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVL--PVNPRFQG-EELFGEEAVASLLDLK-EPVDILDVFRPPSALMDHLP   88 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEE--EECGGGTT-SEETTEECBSSGGGCC-SCCSEEEECSCHHHHTTTHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCEEE--EeCCCccc-CcCCCEEecCCHHHCC-CCCCEEEEEeCHHHHHHHHH
Confidence            568999999    8999999999999999854  44544210 0114777778888886 68999999999998888887


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEe
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC  145 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~  145 (335)
                      ++..  ...+.+|+..+.......+..++   .+.++++
T Consensus        89 ~~~~--~gi~~i~~~~g~~~~~~~~~a~~---~Gir~vg  122 (140)
T 1iuk_A           89 EVLA--LRPGLVWLQSGIRHPEFEKALKE---AGIPVVA  122 (140)
T ss_dssp             HHHH--HCCSCEEECTTCCCHHHHHHHHH---TTCCEEE
T ss_pred             HHHH--cCCCEEEEcCCcCHHHHHHHHHH---cCCEEEc
Confidence            7642  33345676655443223233322   3566775

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.41  E-value=7.9e-07  Score=86.19  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=71.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH--HHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST--QSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~--~~vl~  106 (335)
                      ..+++|+|||+|.||..+|+.++..|.+|+++|+++.....+...|+.. .++++++ .++|+|+.+++...+  .+.+ 
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL-~~ADIVv~atgt~~lI~~e~l-  321 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAA-STADIVVTTTGNKDVITIDHM-  321 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHG-GGCSEEEECCSSSSSBCHHHH-
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHH-hhCCEEEECCCCccccCHHHH-
Confidence            4678999999999999999999999999999999886544455667654 4678887 899999998764432  2333 


Q ss_pred             hccccccCCccEEEEcCCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK  126 (335)
                          ..++++++|++++...
T Consensus       322 ----~~MK~GAILINvGRgd  337 (464)
T 3n58_A          322 ----RKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             ----HHSCTTEEEEECSSST
T ss_pred             ----hcCCCCeEEEEcCCCC
Confidence                3467999999998654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.41  E-value=3e-07  Score=74.57  Aligned_cols=92  Identities=17%  Similarity=0.268  Sum_probs=60.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee----cChhhH----hhcCCCEEEEecCch-h
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF----ADLNDL----CELHPDVVLLSTSIL-S  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~----~~~~~~----~~~~aDvVIlavp~~-~  100 (335)
                      ++++|.|+|+|.+|..++..|.+.|++|+++|++++..+.+.+.+....    .+.+.+    . .++|+||.|++.+ .
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~-~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGI-RNFEYVIVAIGANIQ   83 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTG-GGCSEEEECCCSCHH
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCC-CCCCEEEECCCCchH
Confidence            4568999999999999999999999999999998766554444454321    222221    3 5799999999975 3


Q ss_pred             HH-HHHhhccccccCCccEEEEcCC
Q 044593          101 TQ-SVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 ~~-~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .. .+....  ..+.+..+|+-+.+
T Consensus        84 ~~~~~~~~~--~~~~~~~ii~~~~~  106 (144)
T 2hmt_A           84 ASTLTTLLL--KELDIPNIWVKAQN  106 (144)
T ss_dssp             HHHHHHHHH--HHTTCSEEEEECCS
T ss_pred             HHHHHHHHH--HHcCCCeEEEEeCC
Confidence            32 233222  12344555555443

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.41  E-value=1.3e-06  Score=81.99  Aligned_cols=90  Identities=16%  Similarity=0.177  Sum_probs=63.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHH-HHh---------CC--CceecChhhHhhcCCCEEEEec-
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAV-RQQ---------LN--APFFADLNDLCELHPDVVLLST-   96 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~-a~~---------~g--~~~~~~~~~~~~~~aDvVIlav-   96 (335)
                      ++||+|||+|.||..+|..|...|+ +|+++|++++..+. +..         ..  +..+++. +.+ ++||+||+++ 
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al-~~aD~Vi~a~g   81 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDL-AGADVVIVTAG   81 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGG-TTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHh-CCCCEEEEeCC
Confidence            5799999999999999999999998 99999999875431 111         11  2234666 445 8999999998 


Q ss_pred             -Cch-------------------hHHHHHhhccccccCCccEEEEcCC
Q 044593           97 -SIL-------------------STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        97 -p~~-------------------~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                       |..                   ...++.+++. .. .++++++.+++
T Consensus        82 ~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~-~~-~p~a~iiv~tN  127 (322)
T 1t2d_A           82 FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIK-KN-CPNAFIIVVTN  127 (322)
T ss_dssp             CSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHH-HH-CTTSEEEECSS
T ss_pred             CCCCCCCCcccccHHHHHHHHHHHHHHHHHHHH-HH-CCCeEEEEecC
Confidence             421                   2455666663 33 46777766543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.38  E-value=2.3e-07  Score=84.82  Aligned_cols=91  Identities=18%  Similarity=0.110  Sum_probs=65.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhccc
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPF  110 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~  110 (335)
                      .+++.|||+|.+|.+++..|.+.|.+|++++|+++..+...+.|+... +.+++  .++|+||.|||......  ..+..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l--~~~DiVInaTp~Gm~~~--~~l~~  192 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK--SAFDLIINATSASLHNE--LPLNK  192 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS--SCCSEEEECCTTCCCCS--CSSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh--ccCCEEEEcccCCCCCC--CCCCh
Confidence            789999999999999999999999999999999876543326665432 33444  47999999999763211  01111


Q ss_pred             c----ccCCccEEEEcCCCC
Q 044593          111 Q----RLKRSTLFVDVLSVK  126 (335)
Q Consensus       111 ~----~l~~~~iVvd~~SvK  126 (335)
                      .    .++++.+|+|+....
T Consensus       193 ~~l~~~l~~~~~v~D~vY~P  212 (269)
T 3phh_A          193 EVLKGYFKEGKLAYDLAYGF  212 (269)
T ss_dssp             HHHHHHHHHCSEEEESCCSS
T ss_pred             HHHHhhCCCCCEEEEeCCCC
Confidence            1    356788999997653

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.38  E-value=3.3e-07  Score=88.54  Aligned_cols=92  Identities=16%  Similarity=0.186  Sum_probs=70.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-H-HHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-T-QSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~-~~vl~  106 (335)
                      ..+++|+|+|+|.||..+|..++..|.+|+++|+++.....+...|... .++++++ .++|+||+|+.... + .+.+.
T Consensus       218 L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal-~~ADIVi~atgt~~lI~~e~l~  295 (435)
T 3gvp_A          218 FGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVI-RQVDIVITCTGNKNVVTREHLD  295 (435)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHT-TTCSEEEECSSCSCSBCHHHHH
T ss_pred             ecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHH-hcCCEEEECCCCcccCCHHHHH
Confidence            3678999999999999999999999999999999986554566667643 4678887 89999999743222 1 23333


Q ss_pred             hccccccCCccEEEEcCCCCc
Q 044593          107 SIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~  127 (335)
                           .++++.+|++++..+.
T Consensus       296 -----~MK~gailINvgrg~~  311 (435)
T 3gvp_A          296 -----RMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             -----HSCTTEEEEECSSTTT
T ss_pred             -----hcCCCcEEEEecCCCc
Confidence                 4678999999986654

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.37  E-value=7e-07  Score=83.62  Aligned_cols=79  Identities=18%  Similarity=0.217  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcC-CeE-EEEcCCCCcH-HHHHhCCCc-eecChhhHhhc--CCCEEEEecCchhHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHH-HTL-LVHSRSDHSP-AVRQQLNAP-FFADLNDLCEL--HPDVVLLSTSILSTQ  102 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G-~~V-~~~dr~~~~~-~~a~~~g~~-~~~~~~~~~~~--~aDvVIlavp~~~~~  102 (335)
                      |+++||+|||+|.||..++..+.+.+ .++ .++|++++.. +.+.+.|+. .+++.++++ .  ++|+|++|||.....
T Consensus         3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~   81 (329)
T 3evn_A            3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDML-ADESIDVIYVATINQDHY   81 (329)
T ss_dssp             --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHH-TCTTCCEEEECSCGGGHH
T ss_pred             CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHh-cCCCCCEEEECCCcHHHH
Confidence            45689999999999999999998764 565 4779998754 445667875 678888887 5  799999999999877


Q ss_pred             HHHhhc
Q 044593          103 SVLKSI  108 (335)
Q Consensus       103 ~vl~~l  108 (335)
                      +++...
T Consensus        82 ~~~~~a   87 (329)
T 3evn_A           82 KVAKAA   87 (329)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.37  E-value=4.6e-07  Score=85.33  Aligned_cols=77  Identities=22%  Similarity=0.373  Sum_probs=61.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc-CCeEE-EEcCCCCcH-HHHHhCCCc-eecChhhHhhc--CCCEEEEecCchhHHHH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH-HHTLL-VHSRSDHSP-AVRQQLNAP-FFADLNDLCEL--HPDVVLLSTSILSTQSV  104 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~-G~~V~-~~dr~~~~~-~~a~~~g~~-~~~~~~~~~~~--~aDvVIlavp~~~~~~v  104 (335)
                      ++||+|||+|.||..++..|.+. +++++ ++|++++.. +.+.+.|+. .+++.++++ .  ++|+|++|||+....++
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~~~   80 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELI-EDPNVDAVLVCSSTNTHSEL   80 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHH-HCTTCCEEEECSCGGGHHHH
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHh-cCCCCCEEEEcCCCcchHHH
Confidence            46999999999999999999875 56765 689998764 445566774 678888887 4  79999999999987766


Q ss_pred             Hhhc
Q 044593          105 LKSI  108 (335)
Q Consensus       105 l~~l  108 (335)
                      +...
T Consensus        81 ~~~a   84 (344)
T 3ezy_A           81 VIAC   84 (344)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.36  E-value=7e-07  Score=85.52  Aligned_cols=91  Identities=16%  Similarity=0.170  Sum_probs=68.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-CCCce------ecChhhHhhcCCCEEEEecCchh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-LNAPF------FADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-~g~~~------~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ....++|+|||+|.||..+++.++..|++|+++|++++..+.+.+ .|...      ..++.+++ .++|+||.|++...
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l-~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAV-KRADLVIGAVLVPG  243 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHH-HHCSEEEECCCCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHH-cCCCEEEECCCcCC
Confidence            346789999999999999999999999999999999877655554 56532      22345555 68999999885433


Q ss_pred             -------HHHHHhhccccccCCccEEEEcCC
Q 044593          101 -------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 -------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                             ..+.+     ..++++.+|+|++.
T Consensus       244 ~~t~~li~~~~l-----~~mk~g~~iV~va~  269 (377)
T 2vhw_A          244 AKAPKLVSNSLV-----AHMKPGAVLVDIAI  269 (377)
T ss_dssp             SCCCCCBCHHHH-----TTSCTTCEEEEGGG
T ss_pred             CCCcceecHHHH-----hcCCCCcEEEEEec
Confidence                   23333     24678899999974

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.36  E-value=2e-06  Score=82.82  Aligned_cols=164  Identities=13%  Similarity=0.091  Sum_probs=107.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCC------CCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRS------DHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~------~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      -.+++||+|||+|.-|.+-|..|+..|.+|++--|.      ..+.+.|.+.|..+. +..+++ +.+|+|++-+|+..-
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~-~~ADvV~~L~PD~~q  111 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELI-PQADLVINLTPDKQH  111 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHG-GGCSEEEECSCGGGH
T ss_pred             HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHH-HhCCEEEEeCChhhH
Confidence            346899999999999999999999999999876652      134567888898765 466777 899999999999999


Q ss_pred             HHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCccccc---CCCcceeccccc-CCChhH
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSW---ENLPFMYDKVRI-GNDEER  177 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~---~g~~~i~~~~~~-~~~~~~  177 (335)
                      ..+.+++. |.+++|..+.=.-+   .-+..-.-..|.++.++-.-|=...+.-.+.|   .|.|.++.  +. ..|. +
T Consensus       112 ~~vy~~I~-p~lk~G~~L~faHG---FnI~~~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liA--VhqeqD~-s  184 (491)
T 3ulk_A          112 SDVVRTVQ-PLMKDGAALGYSHG---FNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIA--VHPENDP-K  184 (491)
T ss_dssp             HHHHHHHG-GGSCTTCEEEESSC---HHHHTTCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEE--ECGGGCT-T
T ss_pred             HHHHHHHH-hhCCCCCEEEecCc---ccccccccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEE--EEeCCCC-c
Confidence            99999985 89999988774332   21111111235566766555543221100111   46777663  11 0111 1


Q ss_pred             HHHHHHHHHHHHhcCCE---EEEeCh
Q 044593          178 IKRVDKFLDVFAKEGCR---MVEMSC  200 (335)
Q Consensus       178 ~~~~~~v~~l~~~~G~~---v~~~~~  200 (335)
                      -.+.+....+...+|+.   ++.++-
T Consensus       185 G~a~~~AlayA~aiG~~raGvieTTF  210 (491)
T 3ulk_A          185 GEGMAIAKAWAAATGGHRAGVLESSF  210 (491)
T ss_dssp             SCHHHHHHHHHHHHTGGGTCEEECCH
T ss_pred             hhHHHHHHHHHHhcCCCcCceeeccH
Confidence            12345555677778753   677764

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.35  E-value=4.7e-07  Score=85.60  Aligned_cols=80  Identities=18%  Similarity=0.289  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CCeE-EEEcCCCCcH-HHHHhCCCceecChhhHhh-cCCCEEEEecCchhHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HHTL-LVHSRSDHSP-AVRQQLNAPFFADLNDLCE-LHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V-~~~dr~~~~~-~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~v  104 (335)
                      ++.+||+|||+|.||..++..+.+. +++| .++|++++.. +.+.+.|+..+++.++++. .++|+|++|||.....++
T Consensus         3 ~~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~   82 (354)
T 3db2_A            3 YNPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEV   82 (354)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHH
T ss_pred             CCcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence            3457999999999999999999886 6776 4789998765 3455668877888888762 359999999999887666


Q ss_pred             Hhhc
Q 044593          105 LKSI  108 (335)
Q Consensus       105 l~~l  108 (335)
                      +...
T Consensus        83 ~~~a   86 (354)
T 3db2_A           83 IEQC   86 (354)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.35  E-value=1.6e-06  Score=80.58  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=69.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHh------CCCceecChhhHhhcCCCEEEEecCc---
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQ------LNAPFFADLNDLCELHPDVVLLSTSI---   98 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~------~g~~~~~~~~~~~~~~aDvVIlavp~---   98 (335)
                      .++||+|||+|.||..+|..+...|+  +|+++|++++....+.+      ..+..+.+.++ + ++||+||++...   
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~~~-l-~~aD~Vi~aag~~~p   90 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDLSA-S-AHSKVVIFTVNSLGS   90 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCGGG-G-TTCSEEEECCCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCHHH-H-CCCCEEEEcCCCCCC
Confidence            45899999999999999999999998  99999999752211211      12334567644 4 799999999721   


Q ss_pred             ----------h--hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhh--CCCCCceEec
Q 044593           99 ----------L--STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKY--LPQDFDILCT  146 (335)
Q Consensus        99 ----------~--~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~--l~~~~~~v~~  146 (335)
                                .  ...++++++. .. .++++++.+++.-......+.+.  +|. .+++|.
T Consensus        91 G~tR~dl~~~n~~i~~~i~~~i~-~~-~p~a~iiv~sNP~~~~t~~~~~~~~~p~-~rviG~  149 (303)
T 2i6t_A           91 SQSYLDVVQSNVDMFRALVPALG-HY-SQHSVLLVASQPVEIMTYVTWKLSTFPA-NRVIGI  149 (303)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHH-HH-TTTCEEEECSSSHHHHHHHHHHHHCCCG-GGEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-Hh-CCCeEEEEcCChHHHHHHHHHHhcCCCH-HHeeCC
Confidence                      1  1456666664 33 47778776665333333444443  332 245554

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.34  E-value=5.2e-07  Score=85.85  Aligned_cols=90  Identities=16%  Similarity=0.231  Sum_probs=64.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc---eecC---hhhHhhcCCCEEEEecCchhHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP---FFAD---LNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~---~~~~---~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      .+.|||+|+|+|.+|+.++..|.+ .++|.+.|++.+..+.+.+..-.   ...+   +.+++ +++|+||.|+|+....
T Consensus        14 g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~-~~~DvVi~~~p~~~~~   91 (365)
T 3abi_A           14 GRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVM-KEFELVIGALPGFLGF   91 (365)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHH-TTCSEEEECCCGGGHH
T ss_pred             CCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHH-hCCCEEEEecCCcccc
Confidence            457899999999999999999976 48999999998776655443211   1222   34455 7899999999998766


Q ss_pred             HHHhhccccccCCccEEEEcCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .+++..    ++.|+-++|++-
T Consensus        92 ~v~~~~----~~~g~~yvD~s~  109 (365)
T 3abi_A           92 KSIKAA----IKSKVDMVDVSF  109 (365)
T ss_dssp             HHHHHH----HHHTCEEEECCC
T ss_pred             hHHHHH----HhcCcceEeeec
Confidence            666543    345667777763

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.33  E-value=4.2e-06  Score=78.36  Aligned_cols=93  Identities=17%  Similarity=0.213  Sum_probs=63.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHh---------CCCce--ecChhhHhhcCCCEEEE
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQ---------LNAPF--FADLNDLCELHPDVVLL   94 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~---------~g~~~--~~~~~~~~~~~aDvVIl   94 (335)
                      .|+++||+|||+|.||.++|..|...|+ +|.++|++++..+ .+.+         .....  +++. +.+ ++||+||+
T Consensus         2 ~m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~-~a~-~~aDvVIi   79 (321)
T 3p7m_A            2 AMARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDY-KDL-ENSDVVIV   79 (321)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGG-TTCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCH-HHH-CCCCEEEE
Confidence            3567899999999999999999999888 9999999987542 1111         12222  3454 445 79999999


Q ss_pred             ecCch----------------hHHHHHhhccccccCCccEEEEcCC
Q 044593           95 STSIL----------------STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        95 avp~~----------------~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +.+..                .+.++.+.+. . ..|+++++.+++
T Consensus        80 ~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~-~-~~p~a~vivvtN  123 (321)
T 3p7m_A           80 TAGVPRKPGMSRDDLLGINIKVMQTVGEGIK-H-NCPNAFVICITN  123 (321)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHH-H-HCTTCEEEECCS
T ss_pred             cCCcCCCCCCCHHHHHHHhHHHHHHHHHHHH-H-HCCCcEEEEecC
Confidence            86432                1334444553 2 347777777754

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.33  E-value=8.7e-07  Score=83.25  Aligned_cols=80  Identities=14%  Similarity=0.267  Sum_probs=62.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHH-H-cCCeE-EEEcCCCCcH-HHHHhCCC-ceecChhhHhh-cCCCEEEEecCchhHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFA-R-HHHTL-LVHSRSDHSP-AVRQQLNA-PFFADLNDLCE-LHPDVVLLSTSILSTQ  102 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~-~-~G~~V-~~~dr~~~~~-~~a~~~g~-~~~~~~~~~~~-~~aDvVIlavp~~~~~  102 (335)
                      ++++||+|||+|.||..++..+. + .++++ .++|++++.. +.+.+.|+ ..+++.++++. .++|+|++|+|.....
T Consensus         6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~   85 (346)
T 3cea_A            6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHP   85 (346)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHH
T ss_pred             CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHH
Confidence            45689999999999999999998 5 36775 5789998765 34556687 46778888762 2699999999998876


Q ss_pred             HHHhhc
Q 044593          103 SVLKSI  108 (335)
Q Consensus       103 ~vl~~l  108 (335)
                      +++...
T Consensus        86 ~~~~~a   91 (346)
T 3cea_A           86 EMTIYA   91 (346)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666544

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.33  E-value=9e-07  Score=83.32  Aligned_cols=78  Identities=22%  Similarity=0.298  Sum_probs=61.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHH-H-cCCeEE-EEcCCCCcH-HHHHhCC--CceecChhhHhh-cCCCEEEEecCchhHHH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFA-R-HHHTLL-VHSRSDHSP-AVRQQLN--APFFADLNDLCE-LHPDVVLLSTSILSTQS  103 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~-~-~G~~V~-~~dr~~~~~-~~a~~~g--~~~~~~~~~~~~-~~aDvVIlavp~~~~~~  103 (335)
                      ++||+|||+|.||..++..+. + .+++++ ++|++++.. +.+.+.|  ...+++.++++. .++|+|++|+|.....+
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   81 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHES   81 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred             eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHH
Confidence            469999999999999999998 4 366765 789998754 4556678  457788888872 24999999999998777


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      ++...
T Consensus        82 ~~~~a   86 (344)
T 3mz0_A           82 SVLKA   86 (344)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.32  E-value=8.7e-07  Score=77.92  Aligned_cols=90  Identities=14%  Similarity=0.184  Sum_probs=63.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHH-HHhCCCce----ecCh---hhH-hhcCCCEEEEecCchhHH
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAV-RQQLNAPF----FADL---NDL-CELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~-a~~~g~~~----~~~~---~~~-~~~~aDvVIlavp~~~~~  102 (335)
                      |||.|+|+|.+|..+|..|.+.|++|+++|++++..+. +...|...    .++.   .++ + .++|+||++++.+...
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~~~d~~n   79 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEV-SKNDVVVILTPRDEVN   79 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTC-CTTCEEEECCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCc-ccCCEEEEecCCcHHH
Confidence            78999999999999999999999999999999887654 34456532    1222   222 2 6899999999998766


Q ss_pred             HHHhhccccccCCccEEEEc
Q 044593          103 SVLKSIPFQRLKRSTLFVDV  122 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~  122 (335)
                      ..+..+.....+...+|+-+
T Consensus        80 ~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           80 LFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             HHHHHHHHHTSCCCEEEECC
T ss_pred             HHHHHHHHHHcCCCeEEEEE
Confidence            55554432223344455544

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.32  E-value=4.3e-07  Score=87.75  Aligned_cols=89  Identities=17%  Similarity=0.195  Sum_probs=67.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec---------------------------Chh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA---------------------------DLN   82 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~---------------------------~~~   82 (335)
                      ...+|+|||+|.+|...+..++..|.+|+++|+++...+.+.+.|.....                           ++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~  250 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFA  250 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999877767777765331                           234


Q ss_pred             hHhhcCCCEEEEe--cCchh-----HHHHHhhccccccCCccEEEEcCC
Q 044593           83 DLCELHPDVVLLS--TSILS-----TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        83 ~~~~~~aDvVIla--vp~~~-----~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +++ .++|+||.|  +|...     ..+.++     .++++.+|+|++.
T Consensus       251 e~~-~~aDvVI~~~~~pg~~ap~li~~~~l~-----~mk~g~vIVdva~  293 (401)
T 1x13_A          251 AQA-KEVDIIVTTALIPGKPAPKLITREMVD-----SMKAGSVIVDLAA  293 (401)
T ss_dssp             HHH-HHCSEEEECCCCTTSCCCCCBCHHHHH-----TSCTTCEEEETTG
T ss_pred             HHh-CCCCEEEECCccCCCCCCeeeCHHHHh-----cCCCCcEEEEEcC
Confidence            555 679999999  44211     233333     3568999999974

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.32  E-value=1.3e-06  Score=81.51  Aligned_cols=77  Identities=14%  Similarity=0.077  Sum_probs=60.2

Q ss_pred             CeEEEEcccHHHHHH-HHHHHHcCCeEE-EEcCCCCcH-HHHHhCCCc-eecChhhHhh-cCCCEEEEecCchhHHHHHh
Q 044593           32 LKIAVIGFGNFGQFL-AKAFARHHHTLL-VHSRSDHSP-AVRQQLNAP-FFADLNDLCE-LHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        32 ~kI~IIG~G~mG~si-A~~L~~~G~~V~-~~dr~~~~~-~~a~~~g~~-~~~~~~~~~~-~~aDvVIlavp~~~~~~vl~  106 (335)
                      +||+|||+|.||..+ +..|.+.+++++ ++|++++.. +.+.+.|+. .+++.++++. .++|+|++|||+....+++.
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~   80 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL   80 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence            589999999999998 888877778764 789998655 446667874 6778888762 25999999999988766665


Q ss_pred             hc
Q 044593          107 SI  108 (335)
Q Consensus       107 ~l  108 (335)
                      ..
T Consensus        81 ~a   82 (332)
T 2glx_A           81 AA   82 (332)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.31  E-value=5.1e-06  Score=77.36  Aligned_cols=90  Identities=16%  Similarity=0.196  Sum_probs=61.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHH-HHh--C-------C--CceecChhhHhhcCCCEEEEecC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAV-RQQ--L-------N--APFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~-a~~--~-------g--~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      +|||+|||+|.||..++..|...|+ +|+++|++++..+. +.+  .       .  +..+++. +.+ ++||+||++++
T Consensus         2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~-~~aD~Vi~a~g   79 (309)
T 1ur5_A            2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADT-ANSDVIVVTSG   79 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGG-TTCSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHH-CCCCEEEEcCC
Confidence            3799999999999999999999997 99999999865431 111  1       1  1233566 445 79999999974


Q ss_pred             chh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           98 ILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...                ..++.+.+. . ..++++|+.++.
T Consensus        80 ~p~~~g~~r~dl~~~n~~i~~~i~~~i~-~-~~p~a~vi~~tN  120 (309)
T 1ur5_A           80 APRKPGMSREDLIKVNADITRACISQAA-P-LSPNAVIIMVNN  120 (309)
T ss_dssp             C--------CHHHHHHHHHHHHHHHHHG-G-GCTTCEEEECCS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHH-h-hCCCeEEEEcCC
Confidence            321                234555553 2 347777766543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.31  E-value=4.6e-06  Score=75.05  Aligned_cols=71  Identities=20%  Similarity=0.274  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEE-EEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLL-VHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      |++|||+|+|+|.||..++..+.+.+.+++ ++|+++..     ..|+..+++++++.  ++|+||-++.+..+.+.++
T Consensus         1 M~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~--~~DVvIDft~p~a~~~~~~   72 (243)
T 3qy9_A            1 MASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK--GADVAIDFSNPNLLFPLLD   72 (243)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT--TCSEEEECSCHHHHHHHHT
T ss_pred             CCceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh--CCCEEEEeCChHHHHHHHH
Confidence            357899999999999999999998877765 47988752     46777778887764  7999997777777666665

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.31  E-value=1.3e-06  Score=81.48  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=57.8

Q ss_pred             CCeEEEEcccHHHH-HHHHHHHHc-CCeEEEEcCCCCcH-HHHHhCCCce-ecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGFGNFGQ-FLAKAFARH-HHTLLVHSRSDHSP-AVRQQLNAPF-FADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~-siA~~L~~~-G~~V~~~dr~~~~~-~~a~~~g~~~-~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      ++||+|||+|.||. .++..|.+. +++|+++|++++.. +.+.+.|+.. ..+..+.+..++|+|++|||+....+++.
T Consensus         2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~   81 (323)
T 1xea_A            2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA   81 (323)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHH
Confidence            46999999999998 599998775 67877999998765 4456677753 33333332258999999999998777665


Q ss_pred             hc
Q 044593          107 SI  108 (335)
Q Consensus       107 ~l  108 (335)
                      ..
T Consensus        82 ~a   83 (323)
T 1xea_A           82 FF   83 (323)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.30  E-value=1.2e-06  Score=86.16  Aligned_cols=71  Identities=17%  Similarity=0.228  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcccHH--HHHHHHHHHHc----CCeEEEEcCCCCcHHHHH--------hCC----CceecChhhHhhcCCC
Q 044593           29 STSLKIAVIGFGNF--GQFLAKAFARH----HHTLLVHSRSDHSPAVRQ--------QLN----APFFADLNDLCELHPD   90 (335)
Q Consensus        29 ~~~~kI~IIG~G~m--G~siA~~L~~~----G~~V~~~dr~~~~~~~a~--------~~g----~~~~~~~~~~~~~~aD   90 (335)
                      |+.|||+|||+|.|  |.+++..|...    |++|++||++++..+.+.        ..+    +..++|..+.+ ++||
T Consensus         1 m~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal-~dAD   79 (480)
T 1obb_A            1 MPSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI-IDAD   79 (480)
T ss_dssp             -CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH-TTCS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHh-CCCC
Confidence            34689999999997  56667777643    789999999986543221        111    22356776666 8999


Q ss_pred             EEEEecCchh
Q 044593           91 VVLLSTSILS  100 (335)
Q Consensus        91 vVIlavp~~~  100 (335)
                      +||+++|...
T Consensus        80 ~VIiaagv~~   89 (480)
T 1obb_A           80 FVINTAMVGG   89 (480)
T ss_dssp             EEEECCCTTH
T ss_pred             EEEECCCccc
Confidence            9999998644

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.30  E-value=3.4e-07  Score=85.15  Aligned_cols=88  Identities=15%  Similarity=0.254  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CCeE-EEEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecCchhHHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~vl  105 (335)
                      ++.+||+|||+|.||..++..|.+. ++++ .++|++++..+.+.+. +..+++.++++. .++|+|++|||+....+++
T Consensus         8 ~~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   86 (315)
T 3c1a_A            8 NSPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEIT   86 (315)
T ss_dssp             -CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHH
T ss_pred             CCcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHH
Confidence            3457999999999999999999886 5665 5889987654322222 455677788762 2799999999999877776


Q ss_pred             hhccccccCCcc-EEEE
Q 044593          106 KSIPFQRLKRST-LFVD  121 (335)
Q Consensus       106 ~~l~~~~l~~~~-iVvd  121 (335)
                      ...    ++.|. ++++
T Consensus        87 ~~a----l~~Gk~v~~e   99 (315)
T 3c1a_A           87 LAA----IASGKAVLVE   99 (315)
T ss_dssp             HHH----HHTTCEEEEE
T ss_pred             HHH----HHCCCcEEEc
Confidence            654    23443 5555

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.30  E-value=1e-06  Score=86.11  Aligned_cols=70  Identities=19%  Similarity=0.142  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcccHH--HHHHHHHHHH----cCCeEEEEcCCCCcHHHHHhC---------CCceecChhhHhhcCCCEEE
Q 044593           29 STSLKIAVIGFGNF--GQFLAKAFAR----HHHTLLVHSRSDHSPAVRQQL---------NAPFFADLNDLCELHPDVVL   93 (335)
Q Consensus        29 ~~~~kI~IIG~G~m--G~siA~~L~~----~G~~V~~~dr~~~~~~~a~~~---------g~~~~~~~~~~~~~~aDvVI   93 (335)
                      |+.+||+|||+|.|  |..++..|..    .| +|++||++++..+.....         .+..++|..+++ ++||+||
T Consensus         3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl-~dADfVI   80 (450)
T 3fef_A            3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKAL-SAADIVI   80 (450)
T ss_dssp             CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHH-TTCSEEE
T ss_pred             CCCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHh-cCCCEEE
Confidence            56689999999996  6788888876    46 999999998654322211         234567888877 8999999


Q ss_pred             EecCchh
Q 044593           94 LSTSILS  100 (335)
Q Consensus        94 lavp~~~  100 (335)
                      +++++..
T Consensus        81 ~airvG~   87 (450)
T 3fef_A           81 ISILPGS   87 (450)
T ss_dssp             ECCCSSC
T ss_pred             eccccCC
Confidence            9998653

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.29  E-value=2.6e-06  Score=79.80  Aligned_cols=91  Identities=15%  Similarity=0.129  Sum_probs=66.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcHH-HHHhC-----CCceecChhhHhhcCCCEEEEecCchh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPA-VRQQL-----NAPFFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~-~a~~~-----g~~~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ...++|+|||+|.||.+++.+|.+.  ..+|.+|||+++..+ .+.+.     ++. ..+.++++  ++|+||.|||...
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v--~aDvVi~aTp~~~  199 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS--RCDVLVTTTPSRK  199 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT--SSSEEEECCCCSS
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh--CCCEEEEeeCCCC
Confidence            3567999999999999999999873  358999999987543 33322     233 56677765  7999999999753


Q ss_pred             HHHHHhhccccccCCccEEEEcCCCCc
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                        .++.   ...+++|+.|+++++.+.
T Consensus       200 --pv~~---~~~l~~G~~V~~ig~~~p  221 (322)
T 1omo_A          200 --PVVK---AEWVEEGTHINAIGADGP  221 (322)
T ss_dssp             --CCBC---GGGCCTTCEEEECSCCST
T ss_pred             --ceec---HHHcCCCeEEEECCCCCC
Confidence              2221   235789999999976643

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.29  E-value=5.9e-07  Score=83.28  Aligned_cols=96  Identities=16%  Similarity=0.229  Sum_probs=68.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCCC---cee--cChhhHhhcCCCEEEEecCchhH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLNA---PFF--ADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g~---~~~--~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      ...++|+|||+|.||..++..|.+.|+ +|++++|+++.. +.+.+.+.   ...  .++.+.+ .++|+||.|||....
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~-~~aDivIn~t~~~~~  217 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRL-AEYDIIINTTSVGMH  217 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTG-GGCSEEEECSCTTCS
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhh-ccCCEEEECCCCCCC
Confidence            357899999999999999999999998 999999997654 44555443   221  2334445 689999999997753


Q ss_pred             HHHH-hhccccccCCccEEEEcCCC
Q 044593          102 QSVL-KSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       102 ~~vl-~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ...- ..+....++++.+|+|+...
T Consensus       218 ~~~~~~~i~~~~l~~~~~v~D~~y~  242 (297)
T 2egg_A          218 PRVEVQPLSLERLRPGVIVSDIIYN  242 (297)
T ss_dssp             SCCSCCSSCCTTCCTTCEEEECCCS
T ss_pred             CCCCCCCCCHHHcCCCCEEEEcCCC
Confidence            1100 01212347789999999764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.29  E-value=1.2e-06  Score=84.14  Aligned_cols=89  Identities=12%  Similarity=0.224  Sum_probs=67.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---c-C-------------------------
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---A-D-------------------------   80 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~-~-------------------------   80 (335)
                      ...+|+|+|+|.+|...+..++..|.+|+++|+++...+.+.++|....   . +                         
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  250 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  250 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHH
Confidence            5789999999999999999999999999999999987776777876432   1 0                         


Q ss_pred             hhhHhhcCCCEEEEec--Cchh-----HHHHHhhccccccCCccEEEEcCC
Q 044593           81 LNDLCELHPDVVLLST--SILS-----TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        81 ~~~~~~~~aDvVIlav--p~~~-----~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +.+.+ .++|+||.|+  |...     ..+.++     .++++.+|+|++.
T Consensus       251 l~~~~-~~aDvVi~~~~~pg~~~~~li~~~~l~-----~mk~g~vivdva~  295 (384)
T 1l7d_A          251 VLKEL-VKTDIAITTALIPGKPAPVLITEEMVT-----KMKPGSVIIDLAV  295 (384)
T ss_dssp             HHHHH-TTCSEEEECCCCTTSCCCCCSCHHHHT-----TSCTTCEEEETTG
T ss_pred             HHHHh-CCCCEEEECCccCCCCCCeeeCHHHHh-----cCCCCCEEEEEec
Confidence            44555 6899999998  4211     133332     3678999999973

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.28  E-value=3e-06  Score=70.21  Aligned_cols=95  Identities=9%  Similarity=-0.023  Sum_probs=63.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC-CcHHHH---HhCCCcee----cCh---hhH-hhcCCCEEEEec
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD-HSPAVR---QQLNAPFF----ADL---NDL-CELHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~-~~~~~a---~~~g~~~~----~~~---~~~-~~~~aDvVIlav   96 (335)
                      |..++|.|+|+|.+|..++..|.+.|++|+++|+++ +..+..   ...|+...    ++.   .++ + .++|+||+++
T Consensus         1 ~~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~   79 (153)
T 1id1_A            1 HRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGI-DRCRAILALS   79 (153)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTT-TTCSEEEECS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcCh-hhCCEEEEec
Confidence            346789999999999999999999999999999985 333222   23354321    222   222 3 6899999999


Q ss_pred             CchhHHHHHhhcccccc-CCccEEEEcCCC
Q 044593           97 SILSTQSVLKSIPFQRL-KRSTLFVDVLSV  125 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l-~~~~iVvd~~Sv  125 (335)
                      +.+.....+.... ..+ +...+|+.+.+.
T Consensus        80 ~~d~~n~~~~~~a-~~~~~~~~ii~~~~~~  108 (153)
T 1id1_A           80 DNDADNAFVVLSA-KDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             SCHHHHHHHHHHH-HHHTSSSCEEEECSSG
T ss_pred             CChHHHHHHHHHH-HHHCCCCEEEEEECCH
Confidence            9887555444442 223 344566666543

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.27  E-value=3.9e-06  Score=78.47  Aligned_cols=91  Identities=16%  Similarity=0.163  Sum_probs=58.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHh--CCC------ceecChhhHhhcCCCEEEEecCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQ--LNA------PFFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~--~g~------~~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      +.+||+|||+|.+|.+++..|...|+  +|+++|++++..+ .+.+  .+.      ....+..+.+ ++||+||++++.
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~-~~aDvVii~~g~   84 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDV-KDCDVIVVTAGA   84 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGG-TTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHh-CCCCEEEEcCCC
Confidence            45899999999999999999999987  8999999975432 1222  111      1111223345 799999999875


Q ss_pred             hh----------------HHHHHhhccccccCCccEEEEcC
Q 044593           99 LS----------------TQSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus        99 ~~----------------~~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      ..                +.++.+.+. + ..++++|+.++
T Consensus        85 p~k~g~~r~dl~~~n~~i~~~i~~~i~-~-~~p~a~viv~t  123 (318)
T 1y6j_A           85 NRKPGETRLDLAKKNVMIAKEVTQNIM-K-YYNHGVILVVS  123 (318)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHH-H-HCCSCEEEECS
T ss_pred             CCCCCcCHHHHHHhhHHHHHHHHHHHH-H-hCCCcEEEEec
Confidence            43                345555553 2 35777777764

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.26  E-value=1.5e-06  Score=85.49  Aligned_cols=112  Identities=12%  Similarity=0.099  Sum_probs=73.2

Q ss_pred             CCeEEEEcccHH-HHHHHHHHHHc-----CCeEEEEcCCCCcHHHHH--------hCC----CceecChhhHhhcCCCEE
Q 044593           31 SLKIAVIGFGNF-GQFLAKAFARH-----HHTLLVHSRSDHSPAVRQ--------QLN----APFFADLNDLCELHPDVV   92 (335)
Q Consensus        31 ~~kI~IIG~G~m-G~siA~~L~~~-----G~~V~~~dr~~~~~~~a~--------~~g----~~~~~~~~~~~~~~aDvV   92 (335)
                      .+||+|||+|.+ |..++..|...     +.+|++||++++..+...        ..+    +..++|..+.+ ++||+|
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal-~~AD~V  106 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAF-TDVDFV  106 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHH-SSCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHH-cCCCEE
Confidence            469999999998 66677778776     568999999986543211        111    22356776666 899999


Q ss_pred             EEecCchh------------------------------------HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhh
Q 044593           93 LLSTSILS------------------------------------TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKY  136 (335)
Q Consensus        93 Ilavp~~~------------------------------------~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~  136 (335)
                      |+++|...                                    +.++++.+.  ...|+++++.+++--..+...+.+.
T Consensus       107 Viaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~--~~~P~A~ii~~TNPvdi~T~~~~k~  184 (472)
T 1u8x_X          107 MAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYME--KYSPDAWMLNYSNPAAIVAEATRRL  184 (472)
T ss_dssp             EECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHH--HHCTTCEEEECCSCHHHHHHHHHHH
T ss_pred             EEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHH--HHCCCeEEEEeCCcHHHHHHHHHHh
Confidence            99998743                                    334445553  2568888887765433344566665


Q ss_pred             CCCCCceEec
Q 044593          137 LPQDFDILCT  146 (335)
Q Consensus       137 l~~~~~~v~~  146 (335)
                      .|. .+++|.
T Consensus       185 ~p~-~rViG~  193 (472)
T 1u8x_X          185 RPN-SKILNI  193 (472)
T ss_dssp             STT-CCEEEC
T ss_pred             CCC-CCEEEe
Confidence            543 355554

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.26  E-value=4e-06  Score=78.67  Aligned_cols=93  Identities=15%  Similarity=0.142  Sum_probs=61.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHH-H---Hh------CCCceecChhhHhhcCCCEEEEec
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPAV-R---QQ------LNAPFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~-a---~~------~g~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      ...+||+|||+|.||+++|..|...|+  +|+++|++++..+. +   ..      .++..+++..+.+ ++||+||++.
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~-~~aDvVvi~a   81 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDC-KDADIVCICA   81 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGG-TTCSEEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHh-CCCCEEEEec
Confidence            346899999999999999999999987  89999998764331 1   11      1222233223445 7999999987


Q ss_pred             Cchh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           97 SILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        97 p~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ....                +.++.+.+. . ..++++|+.+++
T Consensus        82 g~p~kpG~~R~dL~~~N~~Iv~~i~~~I~-~-~~p~a~vlvvtN  123 (326)
T 3pqe_A           82 GANQKPGETRLELVEKNLKIFKGIVSEVM-A-SGFDGIFLVATN  123 (326)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHH-H-TTCCSEEEECSS
T ss_pred             ccCCCCCccHHHHHHHHHHHHHHHHHHHH-H-hcCCeEEEEcCC
Confidence            4321                233444442 2 356777777764

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.25  E-value=5.5e-06  Score=77.67  Aligned_cols=92  Identities=18%  Similarity=0.223  Sum_probs=63.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHh---------CCCc--eecChhhHhhcCCCEEEEe
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQ---------LNAP--FFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~---------~g~~--~~~~~~~~~~~~aDvVIla   95 (335)
                      |+++||+|||+|.||.++|..|...|+ +|+++|++++..+ .+.+         ....  .+++. +.+ ++||+||++
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~-~~aDiVIia   82 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAI-EGADVVIVT   82 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGG-TTCSEEEEC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHH-CCCCEEEEc
Confidence            567899999999999999999999998 9999999987542 1111         1222  24555 455 899999999


Q ss_pred             cCchh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           96 TSILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        96 vp~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .+...                +.++.+.+. . ..++++++.+++
T Consensus        83 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~-~-~~p~a~iivvtN  125 (324)
T 3gvi_A           83 AGVPRKPGMSRDDLLGINLKVMEQVGAGIK-K-YAPEAFVICITN  125 (324)
T ss_dssp             CSCCCC-----CHHHHHHHHHHHHHHHHHH-H-HCTTCEEEECCS
T ss_pred             cCcCCCCCCCHHHHHHhhHHHHHHHHHHHH-H-HCCCeEEEecCC
Confidence            74221                234444443 2 347778877764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.24  E-value=5.4e-06  Score=77.45  Aligned_cols=94  Identities=16%  Similarity=0.178  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHh---------CCCceecChhhHhhcCCCEEEEe
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQ---------LNAPFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~---------~g~~~~~~~~~~~~~~aDvVIla   95 (335)
                      .|+.+||+|||+|.+|.+++..|...|.  +|.++|++++..+ .+.+         ..+....+..+.+ ++||+||++
T Consensus         3 ~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~-~~aDvVvi~   81 (317)
T 3d0o_A            3 KFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDC-HDADLVVIC   81 (317)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGG-TTCSEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHh-CCCCEEEEC
Confidence            3567899999999999999999998885  8999999875332 1111         1222222334455 899999999


Q ss_pred             cCchh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           96 TSILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        96 vp~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ++...                +.++.+.+. + ..++++|+.++.
T Consensus        82 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~-~-~~p~a~viv~tN  124 (317)
T 3d0o_A           82 AGAAQKPGETRLDLVSKNLKIFKSIVGEVM-A-SKFDGIFLVATN  124 (317)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHH-H-TTCCSEEEECSS
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHH-H-hCCCcEEEEecC
Confidence            86432                233444443 2 357777777653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.24  E-value=2e-06  Score=82.00  Aligned_cols=95  Identities=13%  Similarity=0.189  Sum_probs=65.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-CCCce------ecChhhHhhcCCCEEEEecCchh-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-LNAPF------FADLNDLCELHPDVVLLSTSILS-  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-~g~~~------~~~~~~~~~~~aDvVIlavp~~~-  100 (335)
                      ...++|+|+|+|.||..+++.++..|++|+++|++++..+.+.+ .|...      ..+..+++ .++|+||.|++... 
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~-~~~DvVi~~~g~~~~  242 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSV-QHADLLIGAVLVPGA  242 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHH-HHCSEEEECCC----
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHH-hCCCEEEECCCCCcc
Confidence            45689999999999999999999999999999999876655544 55432      12334555 68999999998653 


Q ss_pred             -HHHH-HhhccccccCCccEEEEcCCC
Q 044593          101 -TQSV-LKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 -~~~v-l~~l~~~~l~~~~iVvd~~Sv  125 (335)
                       ...+ .++. .+.++++.+|+|+++.
T Consensus       243 ~~~~li~~~~-l~~mk~gg~iV~v~~~  268 (369)
T 2eez_A          243 KAPKLVTRDM-LSLMKEGAVIVDVAVD  268 (369)
T ss_dssp             ---CCSCHHH-HTTSCTTCEEEECC--
T ss_pred             ccchhHHHHH-HHhhcCCCEEEEEecC
Confidence             1111 1111 1346688999999865

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=98.24  E-value=2.8e-06  Score=79.61  Aligned_cols=80  Identities=13%  Similarity=0.142  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcccHHHH-HHHHHHHHcCCeE-EEEcCCCCcH-HHHHhC-CCceecChhhHhh-cCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIGFGNFGQ-FLAKAFARHHHTL-LVHSRSDHSP-AVRQQL-NAPFFADLNDLCE-LHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~-siA~~L~~~G~~V-~~~dr~~~~~-~~a~~~-g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~  103 (335)
                      |+++||+|||+|.+|. .++..|...+++| .++|++++.. +.+.+. +...+++.++++. .+.|+|++|||.....+
T Consensus         2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   81 (336)
T 2p2s_A            2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAE   81 (336)
T ss_dssp             --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred             CCccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHH
Confidence            4578999999999996 6778887778886 6889998754 445566 5567788888872 26999999999987666


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      +....
T Consensus        82 ~~~~a   86 (336)
T 2p2s_A           82 LALRT   86 (336)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=98.22  E-value=1.3e-06  Score=82.95  Aligned_cols=80  Identities=10%  Similarity=0.134  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHHc-CCeEE-EEcCCCCcHHH-HHhC-CCceecChhhHhh-cCCCEEEEecCchhHH
Q 044593           29 STSLKIAVIGFGNFGQF-LAKAFARH-HHTLL-VHSRSDHSPAV-RQQL-NAPFFADLNDLCE-LHPDVVLLSTSILSTQ  102 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~s-iA~~L~~~-G~~V~-~~dr~~~~~~~-a~~~-g~~~~~~~~~~~~-~~aDvVIlavp~~~~~  102 (335)
                      |+.+||+|||+|.||.. ++..|.+. +.+|+ ++|++++..+. +.+. +...+++.++++. .+.|+|++|+|.....
T Consensus         3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~   82 (359)
T 3m2t_A            3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHF   82 (359)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence            45689999999999995 88998876 56765 78999876543 3344 4556788888872 2579999999998876


Q ss_pred             HHHhhc
Q 044593          103 SVLKSI  108 (335)
Q Consensus       103 ~vl~~l  108 (335)
                      +++...
T Consensus        83 ~~~~~a   88 (359)
T 3m2t_A           83 EMGLLA   88 (359)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.21  E-value=2.9e-06  Score=79.31  Aligned_cols=86  Identities=21%  Similarity=0.291  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CCeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      |+++||+|||+|.||..++..+.+. ++++ .++|+++.. +.+  .|+..+++.++++ .++|+||+|+|+....+.+.
T Consensus         1 M~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~~--~gv~~~~d~~~ll-~~~DvViiatp~~~h~~~~~   76 (320)
T 1f06_A            1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DTK--TPVFDVADVDKHA-DDVDVLFLCMGSATDIPEQA   76 (320)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SSS--SCEEEGGGGGGTT-TTCSEEEECSCTTTHHHHHH
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hhc--CCCceeCCHHHHh-cCCCEEEEcCCcHHHHHHHH
Confidence            4567999999999999999999876 4665 578998654 222  4655566777776 78999999999886544433


Q ss_pred             hccccccCCccEEEEc
Q 044593          107 SIPFQRLKRSTLFVDV  122 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~  122 (335)
                      ..    ++.|..|++.
T Consensus        77 ~a----l~aG~~Vv~e   88 (320)
T 1f06_A           77 PK----FAQFACTVDT   88 (320)
T ss_dssp             HH----HTTTSEEECC
T ss_pred             HH----HHCCCEEEEC
Confidence            22    3345555553

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.21  E-value=5.9e-06  Score=76.41  Aligned_cols=89  Identities=12%  Similarity=0.151  Sum_probs=61.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHh-------C--C--CceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQ-------L--N--APFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~-------~--g--~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |||+|||+|.||.++|..|...|+  +|.+||++++..+ .+.+       .  .  +..+++ .+.+ ++||+||++.+
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~-~~aDiVViaag   78 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLL-KGSEIIVVTAG   78 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGG-TTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHh-CCCCEEEECCC
Confidence            799999999999999999999998  9999999986542 1111       1  1  122345 5555 89999999875


Q ss_pred             chh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           98 ILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...                +.++.+.+. . ..|+++|+.+++
T Consensus        79 ~~~kpG~~R~dl~~~N~~i~~~i~~~i~-~-~~p~a~iivvsN  119 (294)
T 1oju_A           79 LARKPGMTRLDLAHKNAGIIKDIAKKIV-E-NAPESKILVVTN  119 (294)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHH-T-TSTTCEEEECSS
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHH-h-hCCCeEEEEeCC
Confidence            321                234444453 2 467788887764

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.17  E-value=1.5e-06  Score=79.92  Aligned_cols=95  Identities=17%  Similarity=0.143  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCCC---ceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLNA---PFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g~---~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ...+++.|+|+|.+|.+++..|.+.|. +|++++|+++.. +.+.+.+.   ....+.+++. .++|+||.|||.....+
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~-~~aDiIInaTp~gm~~~  202 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLK-QSYDVIINSTSASLDGE  202 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCC-SCEEEEEECSCCCC---
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhc-CCCCEEEEcCcCCCCCC
Confidence            357899999999999999999999996 999999998654 33333221   1122345554 68999999999875432


Q ss_pred             HHhhccccccCCccEEEEcCCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      . ..+....++++.+|+|+...
T Consensus       203 ~-~~l~~~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          203 L-PAIDPVIFSSRSVCYDMMYG  223 (281)
T ss_dssp             --CSCCGGGEEEEEEEEESCCC
T ss_pred             C-CCCCHHHhCcCCEEEEecCC
Confidence            2 12222457789999999755

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=98.17  E-value=2.4e-06  Score=83.26  Aligned_cols=84  Identities=12%  Similarity=0.210  Sum_probs=63.5

Q ss_pred             cccCCCCCeEEEEcccHHHH-HHHHHHHHc-CCeE-EEEcCCCCcH-HHHHhCCCc-----eecChhhHhh-cCCCEEEE
Q 044593           25 QYVKSTSLKIAVIGFGNFGQ-FLAKAFARH-HHTL-LVHSRSDHSP-AVRQQLNAP-----FFADLNDLCE-LHPDVVLL   94 (335)
Q Consensus        25 ~~~~~~~~kI~IIG~G~mG~-siA~~L~~~-G~~V-~~~dr~~~~~-~~a~~~g~~-----~~~~~~~~~~-~~aDvVIl   94 (335)
                      ..+.++.+||+|||+|.||. .++..|.+. ++++ .++|++++.. +.+.+.|+.     .+.+.++++. .++|+|++
T Consensus        77 ~~~~~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~i  156 (433)
T 1h6d_A           77 PMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYI  156 (433)
T ss_dssp             CCCCCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEE
T ss_pred             CCCCCCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEE
Confidence            34456778999999999997 899998875 4665 5789998654 445666764     4677888762 27999999


Q ss_pred             ecCchhHHHHHhhc
Q 044593           95 STSILSTQSVLKSI  108 (335)
Q Consensus        95 avp~~~~~~vl~~l  108 (335)
                      |||.....+++...
T Consensus       157 atp~~~h~~~~~~a  170 (433)
T 1h6d_A          157 ILPNSLHAEFAIRA  170 (433)
T ss_dssp             CSCGGGHHHHHHHH
T ss_pred             cCCchhHHHHHHHH
Confidence            99999877666654

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.16  E-value=3.4e-06  Score=79.40  Aligned_cols=80  Identities=13%  Similarity=0.183  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHHc-CCeEE-EEcCCCCcH-HHHHhCCCc-eecChhhHhh-cCCCEEEEecCchhHH
Q 044593           29 STSLKIAVIGFGNFGQF-LAKAFARH-HHTLL-VHSRSDHSP-AVRQQLNAP-FFADLNDLCE-LHPDVVLLSTSILSTQ  102 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~s-iA~~L~~~-G~~V~-~~dr~~~~~-~~a~~~g~~-~~~~~~~~~~-~~aDvVIlavp~~~~~  102 (335)
                      .+++||||||+|.||.. ++.++.+. +.+|+ ++|++++.. +.+.+.|+. .++|.++++. .+.|+|++|||+..-.
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~  100 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHI  100 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHH
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhH
Confidence            36789999999999975 56777775 56765 679998754 556777875 6788998862 3589999999999866


Q ss_pred             HHHhhc
Q 044593          103 SVLKSI  108 (335)
Q Consensus       103 ~vl~~l  108 (335)
                      ++....
T Consensus       101 ~~~~~a  106 (350)
T 4had_A          101 EWSIKA  106 (350)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655543

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.16  E-value=2.7e-06  Score=79.76  Aligned_cols=78  Identities=12%  Similarity=0.196  Sum_probs=60.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC---CeE-EEEcCCCCcH-HHHHhCCC-ceecChhhHhh-cCCCEEEEecCchhHHH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH---HTL-LVHSRSDHSP-AVRQQLNA-PFFADLNDLCE-LHPDVVLLSTSILSTQS  103 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G---~~V-~~~dr~~~~~-~~a~~~g~-~~~~~~~~~~~-~~aDvVIlavp~~~~~~  103 (335)
                      ++||||||+|.||..++..+.+.+   ++| .++|++++.. +.+.+.|+ ..+++.++++. .+.|+|++|||.....+
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~   81 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKA   81 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence            469999999999999999998754   354 5679997654 45666787 46788888872 26999999999998766


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      +....
T Consensus        82 ~~~~a   86 (334)
T 3ohs_X           82 AVMLC   86 (334)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.14  E-value=6.9e-06  Score=76.70  Aligned_cols=92  Identities=18%  Similarity=0.239  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC--CcHH-HHHh---------CC--CceecChhhHhhcCCCEEE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD--HSPA-VRQQ---------LN--APFFADLNDLCELHPDVVL   93 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~--~~~~-~a~~---------~g--~~~~~~~~~~~~~~aDvVI   93 (335)
                      |+.+||+|||+|.||.++|..+...|+ +|+++|+++  +..+ .+.+         ..  +..+++.++ + ++||+||
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a-~-~~aDvVI   83 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYAD-T-ADSDVVV   83 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGG-G-TTCSEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHH-h-CCCCEEE
Confidence            456799999999999999999999999 999999994  2221 1111         11  122345444 4 7999999


Q ss_pred             EecCchh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           94 LSTSILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        94 lavp~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ++.....                +.++.+.+. . ..++++|+.+++
T Consensus        84 iaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~-~-~~p~a~vlvvsN  128 (315)
T 3tl2_A           84 ITAGIARKPGMSRDDLVATNSKIMKSITRDIA-K-HSPNAIIVVLTN  128 (315)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHH-H-HCTTCEEEECCS
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-H-hCCCeEEEECCC
Confidence            9973221                234444443 2 357778777764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.13  E-value=3.7e-06  Score=81.22  Aligned_cols=71  Identities=24%  Similarity=0.357  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCCCce--ecChhhHhhcCCCEEEEecCchh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLNAPF--FADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ..+++|+|||+|.||..++..++..|+ +|+++||+++.. +.+.+.|...  ..++.+++ .++|+||.|||...
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l-~~aDvVi~at~~~~  239 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHL-ARSDVVVSATAAPH  239 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHH-HTCSEEEECCSSSS
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHh-cCCCEEEEccCCCC
Confidence            468899999999999999999999998 999999998664 5666667642  23555666 78999999998654

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=98.13  E-value=3.2e-06  Score=82.45  Aligned_cols=80  Identities=15%  Similarity=0.244  Sum_probs=61.8

Q ss_pred             CCCCeEEEEcc----cHHHHHHHHHHHHc--CCeE-EEEcCCCCcH-HHHHhCCCc---eecChhhHhh-cCCCEEEEec
Q 044593           29 STSLKIAVIGF----GNFGQFLAKAFARH--HHTL-LVHSRSDHSP-AVRQQLNAP---FFADLNDLCE-LHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~----G~mG~siA~~L~~~--G~~V-~~~dr~~~~~-~~a~~~g~~---~~~~~~~~~~-~~aDvVIlav   96 (335)
                      |+.+||+|||+    |.||..++..|.+.  +++| .++|++++.. +.+.+.|+.   .+++.++++. .+.|+|++||
T Consensus        18 m~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~t   97 (438)
T 3btv_A           18 AAPIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAI   97 (438)
T ss_dssp             -CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECS
T ss_pred             cCCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeC
Confidence            45679999999    99999999999886  5676 5789998654 445667775   6788888872 2699999999


Q ss_pred             CchhHHHHHhhc
Q 044593           97 SILSTQSVLKSI  108 (335)
Q Consensus        97 p~~~~~~vl~~l  108 (335)
                      |.....+++...
T Consensus        98 p~~~H~~~~~~a  109 (438)
T 3btv_A           98 QVASHYEVVMPL  109 (438)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            998766555543

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.13  E-value=7.1e-06  Score=77.84  Aligned_cols=82  Identities=21%  Similarity=0.157  Sum_probs=58.6

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHc--------CCeE-EEEcCCCCcH-HHHHhCCCc-eecChhhHhh-cCCCEEEE
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARH--------HHTL-LVHSRSDHSP-AVRQQLNAP-FFADLNDLCE-LHPDVVLL   94 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~--------G~~V-~~~dr~~~~~-~~a~~~g~~-~~~~~~~~~~-~~aDvVIl   94 (335)
                      +.|+.-||||||+|.||...+.++...        +.+| .++|++++.. +.+.+.|+. .++|.++++. .+.|+|++
T Consensus        21 ~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I  100 (393)
T 4fb5_A           21 QSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSV  100 (393)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEE
T ss_pred             cCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEE
Confidence            456777999999999999888777542        4565 5779998765 556677875 6788888872 36899999


Q ss_pred             ecCchhHHHHHhhc
Q 044593           95 STSILSTQSVLKSI  108 (335)
Q Consensus        95 avp~~~~~~vl~~l  108 (335)
                      |||...-.++....
T Consensus       101 atP~~~H~~~a~~a  114 (393)
T 4fb5_A          101 TTPNQFHAEMAIAA  114 (393)
T ss_dssp             CSCGGGHHHHHHHH
T ss_pred             CCChHHHHHHHHHH
Confidence            99999866655543

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.12  E-value=5.7e-06  Score=78.36  Aligned_cols=80  Identities=19%  Similarity=0.175  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CCeE-EEEcCCCCcH-HHHHhCCC----ceecChhhHhh-cCCCEEEEecCchh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HHTL-LVHSRSDHSP-AVRQQLNA----PFFADLNDLCE-LHPDVVLLSTSILS  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V-~~~dr~~~~~-~~a~~~g~----~~~~~~~~~~~-~~aDvVIlavp~~~  100 (335)
                      ++++||+|||+|.||..++..|.+. ++++ .++|++++.. +.+.+.|+    ..+.+.++++. .++|+|++|||...
T Consensus         4 ~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   83 (362)
T 1ydw_A            4 ETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSL   83 (362)
T ss_dssp             --CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred             CCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHH
Confidence            4568999999999999999999875 5665 5789988654 45566674    45678888762 26999999999998


Q ss_pred             HHHHHhhc
Q 044593          101 TQSVLKSI  108 (335)
Q Consensus       101 ~~~vl~~l  108 (335)
                      ..+++...
T Consensus        84 h~~~~~~a   91 (362)
T 1ydw_A           84 HVEWAIKA   91 (362)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.10  E-value=1.1e-05  Score=75.66  Aligned_cols=72  Identities=11%  Similarity=0.093  Sum_probs=51.2

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHh--C------CCceecChhhHhhcCCCEEEEe
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQ--L------NAPFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~--~------g~~~~~~~~~~~~~~aDvVIla   95 (335)
                      +..+.+||+|||+|.+|.+++..|...+.  +|.++|++++..+ .+.+  .      .+....+..+.+ ++||+||++
T Consensus         5 ~~~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~-~~aDvVii~   83 (326)
T 2zqz_A            5 TDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDA-KDADLVVIT   83 (326)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGG-GGCSEEEEC
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHh-CCCCEEEEc
Confidence            34566899999999999999999998886  8999999875442 1222  1      122223334445 799999999


Q ss_pred             cCch
Q 044593           96 TSIL   99 (335)
Q Consensus        96 vp~~   99 (335)
                      .+..
T Consensus        84 ag~~   87 (326)
T 2zqz_A           84 AGAP   87 (326)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.09  E-value=1.9e-05  Score=73.72  Aligned_cols=90  Identities=18%  Similarity=0.265  Sum_probs=60.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHh---------CCCcee-cChhhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQ---------LNAPFF-ADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~---------~g~~~~-~~~~~~~~~~aDvVIlavp~   98 (335)
                      |||+|||+|.||.++|..|...|+  +|+++|++++..+ .+.+         ...... ++..+.+ ++||+||++.+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~-~~aDvVii~ag~   79 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPT-EDSDVCIITAGL   79 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGG-TTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHh-CCCCEEEECCCC
Confidence            799999999999999999999887  8999999986532 1111         122222 2334445 799999998754


Q ss_pred             hh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           99 LS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..                +.++.+.+. . ..|+.+|+.+++
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~-~-~~p~a~vivvtN  119 (314)
T 3nep_X           80 PRSPGMSRDDLLAKNTEIVGGVTEQFV-E-GSPDSTIIVVAN  119 (314)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHH-T-TCTTCEEEECCS
T ss_pred             CCCCCCCHHHHHHhhHHHHHHHHHHHH-H-hCCCcEEEecCC
Confidence            32                233334442 2 357778777764

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.07  E-value=1.4e-05  Score=74.30  Aligned_cols=88  Identities=17%  Similarity=0.203  Sum_probs=61.5

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHH-HHh---------CCC--ceecChhhHhhcCCCEEEEecCch
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAV-RQQ---------LNA--PFFADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~-a~~---------~g~--~~~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      ||+|||+|.||.+++..+...|+ +|.++|++++..+. +.+         ...  ..+++.+ .+ ++||+||++.+..
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~-a~-~~aD~Vi~~ag~~   78 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYE-DM-RGSDIVLVTAGIG   78 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGG-GG-TTCSEEEECCSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHH-Hh-CCCCEEEEeCCCC
Confidence            79999999999999999998888 79999999865431 111         122  2235654 45 8999999997644


Q ss_pred             h----------------HHHHHhhccccccCCccEEEEcCC
Q 044593          100 S----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 ~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .                +.++.+++. . ..++++++.+++
T Consensus        79 ~k~G~~r~dl~~~n~~i~~~i~~~i~-~-~~p~a~iiv~tN  117 (308)
T 2d4a_B           79 RKPGMTREQLLEANANTMADLAEKIK-A-YAKDAIVVITTN  117 (308)
T ss_dssp             CCSSCCTHHHHHHHHHHHHHHHHHHH-H-HCTTCEEEECCS
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHH-H-HCCCeEEEEeCC
Confidence            3                456666663 2 347777766654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=98.07  E-value=7.7e-06  Score=79.20  Aligned_cols=93  Identities=13%  Similarity=0.238  Sum_probs=66.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee----cChhhHh---hcCCCEEEEecCchhHH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF----ADLNDLC---ELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~----~~~~~~~---~~~aDvVIlavp~~~~~  102 (335)
                      ..++|.|||+|.+|..+++.|.+.|++|+++|+|++..+.+++.|+...    ++.+.+.   ..++|+||+|++.+...
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n   82 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTN   82 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHH
Confidence            4578999999999999999999999999999999998887888887532    2322221   16899999999987654


Q ss_pred             HHHhhccccccCCc-cEEEEcC
Q 044593          103 SVLKSIPFQRLKRS-TLFVDVL  123 (335)
Q Consensus       103 ~vl~~l~~~~l~~~-~iVvd~~  123 (335)
                      ..+.... ..+.++ .+|+-+.
T Consensus        83 ~~i~~~a-r~~~p~~~Iiara~  103 (413)
T 3l9w_A           83 LQLTEMV-KEHFPHLQIIARAR  103 (413)
T ss_dssp             HHHHHHH-HHHCTTCEEEEEES
T ss_pred             HHHHHHH-HHhCCCCeEEEEEC
Confidence            3333332 234455 4555443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.06  E-value=1.9e-06  Score=78.79  Aligned_cols=96  Identities=15%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCC--c-eecChhhHhhc-CCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNA--P-FFADLNDLCEL-HPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~--~-~~~~~~~~~~~-~aDvVIlavp~~~~~~  103 (335)
                      ...++|+|+|+|.||.+++..|.+.|.+|++++|+++.. +.+.+.+.  . ...+.+++. . ++|+||.|||......
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~~~DivIn~t~~~~~~~  195 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIP-LQTYDLVINATSAGLSGG  195 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCC-CSCCSEEEECCCC-----
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhc-cCCCCEEEECCCCCCCCC
Confidence            356899999999999999999999999999999997654 33333221  1 122334442 3 7999999999876543


Q ss_pred             HHhhccccccCCccEEEEcCCCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~SvK  126 (335)
                      + ..+....++++.+|+|+....
T Consensus       196 ~-~~i~~~~l~~~~~v~D~~y~p  217 (272)
T 1p77_A          196 T-ASVDAEILKLGSAFYDMQYAK  217 (272)
T ss_dssp             ---CCCHHHHHHCSCEEESCCCT
T ss_pred             C-CCCCHHHcCCCCEEEEeeCCC
Confidence            2 123223356788999997653

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.06  E-value=9.4e-06  Score=76.11  Aligned_cols=95  Identities=13%  Similarity=0.143  Sum_probs=62.5

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC--------CCceecChhhHhhcCCCEEEEe
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL--------NAPFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~--------g~~~~~~~~~~~~~~aDvVIla   95 (335)
                      .+...+||+|||+|.||+++|..|...|+  ++.++|++++..+ .+.++        ++...++..+.+ ++||+||++
T Consensus         5 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~-~~aDiVvi~   83 (326)
T 3vku_A            5 TDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDA-KDADLVVIT   83 (326)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGG-TTCSEEEEC
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHh-cCCCEEEEC
Confidence            35678899999999999999999999887  8999999875432 11111        222333334445 799999998


Q ss_pred             cCchh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           96 TSILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        96 vp~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .....                +.++.+.+. . ..|+++++.+++
T Consensus        84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~-~-~~p~a~ilvvtN  126 (326)
T 3vku_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIV-D-SGFNGIFLVAAN  126 (326)
T ss_dssp             CCCC----------------CHHHHHHHHH-T-TTCCSEEEECSS
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHH-h-cCCceEEEEccC
Confidence            74321                234444442 2 346777777754

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.05  E-value=9.3e-06  Score=74.02  Aligned_cols=97  Identities=14%  Similarity=0.172  Sum_probs=67.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCC---ceecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNA---PFFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~---~~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      ...+++.|+|+|.||.+++..|.+.|.+|++++|+++.. +.+.+.+.   ....+.+++...++|+||.|+|......+
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~~~  196 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDI  196 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTCC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCCCC
Confidence            356899999999999999999999999999999997654 34444332   11223333310279999999997654221


Q ss_pred             HhhccccccCCccEEEEcCCCC
Q 044593          105 LKSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~SvK  126 (335)
                       ..+....++++.+++|+....
T Consensus       197 -~~i~~~~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          197 -PAIPSSLIHPGIYCYDMFYQK  217 (271)
T ss_dssp             -CCCCGGGCCTTCEEEESCCCS
T ss_pred             -CCCCHHHcCCCCEEEEeccCC
Confidence             123223467889999997653

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.04  E-value=4.7e-06  Score=78.44  Aligned_cols=77  Identities=18%  Similarity=0.185  Sum_probs=56.3

Q ss_pred             CCeEEEEcccHHHHH-HHHHH-HH-cCCeEE-EEcCCCCcHHHHHh-CCCceecChhhHhhc--CCCEEEEecCchhHHH
Q 044593           31 SLKIAVIGFGNFGQF-LAKAF-AR-HHHTLL-VHSRSDHSPAVRQQ-LNAPFFADLNDLCEL--HPDVVLLSTSILSTQS  103 (335)
Q Consensus        31 ~~kI~IIG~G~mG~s-iA~~L-~~-~G~~V~-~~dr~~~~~~~a~~-~g~~~~~~~~~~~~~--~aDvVIlavp~~~~~~  103 (335)
                      ++||+|||+|.||.. .+.++ .. .+++|+ ++|++++..+.+.+ .++..+++.++++ .  +.|+|++|+|.....+
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~D~V~i~tp~~~h~~   80 (345)
T 3f4l_A            2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVL-NDPDVKLVVVCTHADSHFE   80 (345)
T ss_dssp             CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHH-TCTTEEEEEECSCGGGHHH
T ss_pred             ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHh-cCCCCCEEEEcCChHHHHH
Confidence            479999999999986 45523 33 367775 78999876543333 3666788888887 4  4899999999998766


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      +....
T Consensus        81 ~~~~a   85 (345)
T 3f4l_A           81 YAKRA   85 (345)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66544

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.04  E-value=7.5e-06  Score=77.63  Aligned_cols=78  Identities=19%  Similarity=0.258  Sum_probs=58.9

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHHc-CCeE-EEEcCCCCcHHHHHhC-CCceecChhhHhh-cCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIGFGNFGQF-LAKAFARH-HHTL-LVHSRSDHSPAVRQQL-NAPFFADLNDLCE-LHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~s-iA~~L~~~-G~~V-~~~dr~~~~~~~a~~~-g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~  103 (335)
                      |+++||+|||+|.||.. .+..+.+. +++| .++|++++..  +.+. ++..+++.++++. .+.|+|++|||.....+
T Consensus         3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~--~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~   80 (362)
T 3fhl_A            3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELS--KERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYE   80 (362)
T ss_dssp             CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGG--GTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHH
T ss_pred             CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH--HHhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            45689999999999997 67777765 6776 4779998653  3444 5667788888872 24999999999988666


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      +....
T Consensus        81 ~~~~a   85 (362)
T 3fhl_A           81 YAGMA   85 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66544

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=98.03  E-value=5e-06  Score=79.92  Aligned_cols=81  Identities=21%  Similarity=0.216  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcccH---HHHHHHHHHHHcC-CeEE--EEcCCCCcH-HHHHhCCC---ceecChhhHhhc------CCCE
Q 044593           28 KSTSLKIAVIGFGN---FGQFLAKAFARHH-HTLL--VHSRSDHSP-AVRQQLNA---PFFADLNDLCEL------HPDV   91 (335)
Q Consensus        28 ~~~~~kI~IIG~G~---mG~siA~~L~~~G-~~V~--~~dr~~~~~-~~a~~~g~---~~~~~~~~~~~~------~aDv   91 (335)
                      .|+.+||||||+|.   ||...+.++...+ ++++  ++|++++.. +.+.+.|+   ..+++.++++..      +.|+
T Consensus         9 ~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~   88 (398)
T 3dty_A            9 IPQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQA   88 (398)
T ss_dssp             SCSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSE
T ss_pred             ccCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCE
Confidence            36678999999999   9999999888765 6775  469998654 45677888   567888888721      4999


Q ss_pred             EEEecCchhHHHHHhhc
Q 044593           92 VLLSTSILSTQSVLKSI  108 (335)
Q Consensus        92 VIlavp~~~~~~vl~~l  108 (335)
                      |++|||...-.++....
T Consensus        89 V~i~tp~~~H~~~~~~a  105 (398)
T 3dty_A           89 VSIATPNGTHYSITKAA  105 (398)
T ss_dssp             EEEESCGGGHHHHHHHH
T ss_pred             EEECCCcHHHHHHHHHH
Confidence            99999999866666544

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.03  E-value=5.9e-06  Score=80.89  Aligned_cols=91  Identities=13%  Similarity=0.108  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-HhCC-Cc----eec---ChhhHhhcCCCEEEEecCch
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-QQLN-AP----FFA---DLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-~~~g-~~----~~~---~~~~~~~~~aDvVIlavp~~   99 (335)
                      |++++|+|+|+|.||..++..|.+.|++|+++||+++..+.. ...+ +.    ...   +..+++ .++|+||.|+|..
T Consensus         1 M~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l-~~~DvVIn~a~~~   79 (450)
T 1ff9_A            1 MATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEV-AKHDLVISLIPYT   79 (450)
T ss_dssp             -CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHH-TTSSEEEECCC--
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHH-cCCcEEEECCccc
Confidence            356799999999999999999999999999999987554322 2222 21    112   233455 6899999999976


Q ss_pred             hHHHHHhhccccccCCccEEEEcCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ....+...    .+.++..++|.+.
T Consensus        80 ~~~~i~~a----~l~~g~~vvd~~~  100 (450)
T 1ff9_A           80 FHATVIKS----AIRQKKHVVTTSY  100 (450)
T ss_dssp             CHHHHHHH----HHHHTCEEEESSC
T ss_pred             cchHHHHH----HHhCCCeEEEeec
Confidence            54433322    2345566777653

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.03  E-value=8.6e-06  Score=77.33  Aligned_cols=78  Identities=19%  Similarity=0.281  Sum_probs=57.7

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHHc-CCeEE-EEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecCchhHHHHH
Q 044593           30 TSLKIAVIGFGNFGQF-LAKAFARH-HHTLL-VHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~s-iA~~L~~~-G~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~vl  105 (335)
                      +++||+|||+|.||.. .+..+.+. +++|+ ++|++++..+ ....+...+++.++++. .+.|+|++|||.....+++
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~   84 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK-RDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLA   84 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-HHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH-hhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence            4579999999999996 67777765 67774 7799875443 22235667788998872 2799999999998876666


Q ss_pred             hhc
Q 044593          106 KSI  108 (335)
Q Consensus       106 ~~l  108 (335)
                      ...
T Consensus        85 ~~a   87 (364)
T 3e82_A           85 RLA   87 (364)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.02  E-value=1e-05  Score=76.26  Aligned_cols=77  Identities=17%  Similarity=0.247  Sum_probs=57.4

Q ss_pred             CCeEEEEcccHHHH-HHHHHHHHc-CCeE-EEEcCCCCcHHHHHh---CCCceecChhhHhh-cCCCEEEEecCchhHHH
Q 044593           31 SLKIAVIGFGNFGQ-FLAKAFARH-HHTL-LVHSRSDHSPAVRQQ---LNAPFFADLNDLCE-LHPDVVLLSTSILSTQS  103 (335)
Q Consensus        31 ~~kI~IIG~G~mG~-siA~~L~~~-G~~V-~~~dr~~~~~~~a~~---~g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~  103 (335)
                      ++||+|||+|.||. ..+..+.+. +++| .++|++ ...+.+.+   .++..+++.++++. .+.|+|++|||.....+
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   80 (349)
T 3i23_A            2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYD   80 (349)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHH
T ss_pred             eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHH
Confidence            46999999999998 567777664 5676 477988 44444444   46677888998872 24899999999988766


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      +....
T Consensus        81 ~~~~a   85 (349)
T 3i23_A           81 LAKQA   85 (349)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66544

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.01  E-value=8.7e-06  Score=74.44  Aligned_cols=95  Identities=18%  Similarity=0.192  Sum_probs=65.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCCC--ceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLNA--PFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g~--~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      ..+++.|+|+|.+|.+++..|.+.|. +|++++|+++.. +.+.+.+.  ....+.+++...++|+||.|||....... 
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~~-  197 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTADL-  197 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTCC-
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCCC-
Confidence            57899999999999999999999996 999999998654 33444331  11122333311479999999998753211 


Q ss_pred             hhccccccCCccEEEEcCCC
Q 044593          106 KSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ..+....++++.+|+|+...
T Consensus       198 ~~i~~~~l~~~~~V~DlvY~  217 (272)
T 3pwz_A          198 PPLPADVLGEAALAYELAYG  217 (272)
T ss_dssp             CCCCGGGGTTCSEEEESSCS
T ss_pred             CCCCHHHhCcCCEEEEeecC
Confidence            11222457889999999654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.01  E-value=1.3e-05  Score=74.91  Aligned_cols=92  Identities=15%  Similarity=0.236  Sum_probs=60.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC--------CCceecChhhHhhcCCCEEEEecCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL--------NAPFFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~--------g~~~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      +.+||+|||+|.+|.+++..|...+.  +|.++|++++..+ .+.++        .+....+..+.+ ++||+||++.+.
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~-~~aDvVii~ag~   82 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC-KDADLVVITAGA   82 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG-TTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHh-CCCCEEEECCCC
Confidence            34899999999999999999998886  8999999875443 12221        222223334445 899999999865


Q ss_pred             hh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           99 LS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..                +.++.+.+. . ..++++|+.++.
T Consensus        83 ~~~~g~~R~dl~~~n~~i~~~i~~~i~-~-~~p~a~iiv~tN  122 (318)
T 1ez4_A           83 PQKPGESRLDLVNKNLNILSSIVKPVV-D-SGFDGIFLVAAN  122 (318)
T ss_dssp             ----------CHHHHHHHHHHHHHHHH-H-TTCCSEEEECSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHH-H-hCCCeEEEEeCC
Confidence            43                233334442 2 357777777643

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.01  E-value=1.5e-05  Score=73.29  Aligned_cols=106  Identities=14%  Similarity=0.104  Sum_probs=71.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhC-----CCc--ee--cChhhHhhcCCCEEEEecC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQL-----NAP--FF--ADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~-----g~~--~~--~~~~~~~~~~aDvVIlavp   97 (335)
                      ...+++.|+|+|.+|.+++..|.+.|. +|++++|+++..+ .+.+.     ++.  ..  .++.+.+ .++|+||-|||
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l-~~~DiVInaTp  203 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVI-AAADGVVNATP  203 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHH-HHSSEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHH-hcCCEEEECCC
Confidence            457899999999999999999999998 7999999976543 23222     121  22  2555555 68999999999


Q ss_pred             chhHHHHHhhccccccCCccEEEEcCCC--CchHHHHHHh
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVLSV--KEFPRNLFLK  135 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~Sv--K~~~~~~l~~  135 (335)
                      .......-..+....++++.+|+|+.-.  .+..++..++
T Consensus       204 ~Gm~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~ll~~A~~  243 (283)
T 3jyo_A          204 MGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAARA  243 (283)
T ss_dssp             TTSTTSCSCSSCGGGCCTTCEEEECCCSSSSCHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHhCCCCEEEEecCCCCCCHHHHHHHH
Confidence            7643210011222357788999998644  2344444443

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.01  E-value=8e-06  Score=77.07  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=58.0

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHHc-CCeEE-EEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecCchhHHHHH
Q 044593           30 TSLKIAVIGFGNFGQF-LAKAFARH-HHTLL-VHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~s-iA~~L~~~-G~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~vl  105 (335)
                      +++||+|||+|.||.. .+..+.+. +++|+ ++|++++..+ ....+...+++.++++. .+.|+|++|||.....+++
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~   84 (352)
T 3kux_A            6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH-ADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLA   84 (352)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-TTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-hhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence            4579999999999996 77888765 56764 7899876544 22235567788998872 2499999999998866665


Q ss_pred             hhc
Q 044593          106 KSI  108 (335)
Q Consensus       106 ~~l  108 (335)
                      ...
T Consensus        85 ~~a   87 (352)
T 3kux_A           85 QSA   87 (352)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=98.00  E-value=6.1e-06  Score=79.88  Aligned_cols=80  Identities=15%  Similarity=0.218  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcccH---HHHHHHHHHHHcC-CeEE--EEcCCCCcH-HHHHhCCC---ceecChhhHhhc------CCCEE
Q 044593           29 STSLKIAVIGFGN---FGQFLAKAFARHH-HTLL--VHSRSDHSP-AVRQQLNA---PFFADLNDLCEL------HPDVV   92 (335)
Q Consensus        29 ~~~~kI~IIG~G~---mG~siA~~L~~~G-~~V~--~~dr~~~~~-~~a~~~g~---~~~~~~~~~~~~------~aDvV   92 (335)
                      |+.+||+|||+|.   ||...+.++...+ ++++  ++|++++.. +.+.+.|+   ..+++.++++..      +.|+|
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V  114 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAV  114 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEE
Confidence            5567999999999   9999999888776 5765  579998654 45666788   467888888721      49999


Q ss_pred             EEecCchhHHHHHhhc
Q 044593           93 LLSTSILSTQSVLKSI  108 (335)
Q Consensus        93 Ilavp~~~~~~vl~~l  108 (335)
                      ++|||.....+++...
T Consensus       115 ~I~tp~~~H~~~~~~a  130 (417)
T 3v5n_A          115 AIVTPNHVHYAAAKEF  130 (417)
T ss_dssp             EECSCTTSHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHH
Confidence            9999999876666554

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=98.00  E-value=9.1e-06  Score=72.03  Aligned_cols=92  Identities=10%  Similarity=0.070  Sum_probs=65.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecChhh---H-hhcCCCEEEEecCchhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADLND---L-CELHPDVVLLSTSILST  101 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~~~---~-~~~~aDvVIlavp~~~~  101 (335)
                      ..++|.|+|+|.+|..++..|.+.|+ |+++|++++..+.+. .|+..    .++.+.   + + .++|.||++++.+..
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~~~d~~   84 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANV-RGARAVIVDLESDSE   84 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTC-TTCSEEEECCSCHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCc-chhcEEEEcCCCcHH
Confidence            45789999999999999999999999 999999988776555 66542    222222   2 3 689999999998865


Q ss_pred             HHHHhhccccccCCc-cEEEEcCCC
Q 044593          102 QSVLKSIPFQRLKRS-TLFVDVLSV  125 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~-~iVvd~~Sv  125 (335)
                      ...+.... ..+.++ .+|+.+.+.
T Consensus        85 n~~~~~~a-~~~~~~~~iia~~~~~  108 (234)
T 2aef_A           85 TIHCILGI-RKIDESVRIIAEAERY  108 (234)
T ss_dssp             HHHHHHHH-HHHCSSSEEEEECSSG
T ss_pred             HHHHHHHH-HHHCCCCeEEEEECCH
Confidence            44433332 234555 677777654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.00  E-value=9.5e-06  Score=77.11  Aligned_cols=90  Identities=14%  Similarity=0.199  Sum_probs=66.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----e---cChhhHhhcCCCEEEEecCchh--
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----F---ADLNDLCELHPDVVLLSTSILS--  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~---~~~~~~~~~~aDvVIlavp~~~--  100 (335)
                      ...+|+|+|+|.+|..++..++..|.+|+++||+++..+.+.+.+...    .   .+..+.+ .++|+||-|++...  
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvVI~~~~~~~~~  244 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAV-AEADLLIGAVLVPGRR  244 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHH-HTCSEEEECCCCTTSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHH-cCCCEEEECCCcCCCC
Confidence            458999999999999999999999999999999987766555543221    1   1233444 68999999997643  


Q ss_pred             -----HHHHHhhccccccCCccEEEEcCCC
Q 044593          101 -----TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 -----~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                           ....+     ..++++.+|+|++..
T Consensus       245 ~~~li~~~~~-----~~~~~g~~ivdv~~~  269 (361)
T 1pjc_A          245 APILVPASLV-----EQMRTGSVIVDVAVD  269 (361)
T ss_dssp             CCCCBCHHHH-----TTSCTTCEEEETTCT
T ss_pred             CCeecCHHHH-----hhCCCCCEEEEEecC
Confidence                 22222     246688999999864

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.99  E-value=1.6e-05  Score=78.50  Aligned_cols=84  Identities=15%  Similarity=0.226  Sum_probs=64.6

Q ss_pred             cccCCCCCeEEEEcc----cHHHHHHHHHHHHc--CCeE-EEEcCCCCcH-HHHHhCCCc---eecChhhHhh-cCCCEE
Q 044593           25 QYVKSTSLKIAVIGF----GNFGQFLAKAFARH--HHTL-LVHSRSDHSP-AVRQQLNAP---FFADLNDLCE-LHPDVV   92 (335)
Q Consensus        25 ~~~~~~~~kI~IIG~----G~mG~siA~~L~~~--G~~V-~~~dr~~~~~-~~a~~~g~~---~~~~~~~~~~-~~aDvV   92 (335)
                      +++.|+.+||+|||+    |.||...+..|.+.  +++| .++|++++.. +.+.+.|+.   .+++.++++. .+.|+|
T Consensus        33 ~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V  112 (479)
T 2nvw_A           33 TVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMI  112 (479)
T ss_dssp             SSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEE
T ss_pred             CCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEE
Confidence            334466789999999    99999999999886  6676 5789998654 455667775   6788888872 369999


Q ss_pred             EEecCchhHHHHHhhc
Q 044593           93 LLSTSILSTQSVLKSI  108 (335)
Q Consensus        93 Ilavp~~~~~~vl~~l  108 (335)
                      ++|||.....+++...
T Consensus       113 ~I~tp~~~H~~~~~~a  128 (479)
T 2nvw_A          113 VVSVKVPEHYEVVKNI  128 (479)
T ss_dssp             EECSCHHHHHHHHHHH
T ss_pred             EEcCCcHHHHHHHHHH
Confidence            9999998766655543

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=97.96  E-value=1e-05  Score=76.08  Aligned_cols=81  Identities=15%  Similarity=0.227  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEccc-HHHHHHHHHHHHc--CCeE-EEEcCCCCcH-HHHHhCCC-ceecChhhHhh-cCCCEEEEecCchh
Q 044593           28 KSTSLKIAVIGFG-NFGQFLAKAFARH--HHTL-LVHSRSDHSP-AVRQQLNA-PFFADLNDLCE-LHPDVVLLSTSILS  100 (335)
Q Consensus        28 ~~~~~kI~IIG~G-~mG~siA~~L~~~--G~~V-~~~dr~~~~~-~~a~~~g~-~~~~~~~~~~~-~~aDvVIlavp~~~  100 (335)
                      +.+.+||+|||+| .+|...+..+.+.  ++++ .++|++++.. +.+.+.|+ ..++|.++++. .+.|+|++|||...
T Consensus        15 ~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   94 (340)
T 1zh8_A           15 PLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVEL   94 (340)
T ss_dssp             -CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGG
T ss_pred             CCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence            3456899999999 8999999999876  4566 6789998755 44566676 56788888862 36999999999987


Q ss_pred             HHHHHhhc
Q 044593          101 TQSVLKSI  108 (335)
Q Consensus       101 ~~~vl~~l  108 (335)
                      ..++....
T Consensus        95 H~~~~~~a  102 (340)
T 1zh8_A           95 NLPFIEKA  102 (340)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666544

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.96  E-value=9.9e-06  Score=76.69  Aligned_cols=78  Identities=12%  Similarity=0.238  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHHc-CCeE-EEEcCCCCcHHHHHhC-CCceecChhhHhh-cCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIGFGNFGQF-LAKAFARH-HHTL-LVHSRSDHSPAVRQQL-NAPFFADLNDLCE-LHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~s-iA~~L~~~-G~~V-~~~dr~~~~~~~a~~~-g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~  103 (335)
                      |+++||||||+|.||.. .+..+.+. +++| .++|++++.  .+.+. ++..+++.++++. .+.|+|++|||.....+
T Consensus         3 m~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~   80 (358)
T 3gdo_A            3 LDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE--VKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYE   80 (358)
T ss_dssp             TTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH--HHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHH
T ss_pred             CCcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH--HHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHH
Confidence            35679999999999996 67777665 6676 467988754  34444 5667788888872 27999999999988766


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      +....
T Consensus        81 ~~~~a   85 (358)
T 3gdo_A           81 HTMAC   85 (358)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66544

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=97.96  E-value=1.5e-05  Score=77.98  Aligned_cols=69  Identities=17%  Similarity=0.133  Sum_probs=49.7

Q ss_pred             CCeEEEEcccHH-HHHHHHHHHHc-----CCeEEEEcCCC--CcHHH----HH----hCCC----ceecChhhHhhcCCC
Q 044593           31 SLKIAVIGFGNF-GQFLAKAFARH-----HHTLLVHSRSD--HSPAV----RQ----QLNA----PFFADLNDLCELHPD   90 (335)
Q Consensus        31 ~~kI~IIG~G~m-G~siA~~L~~~-----G~~V~~~dr~~--~~~~~----a~----~~g~----~~~~~~~~~~~~~aD   90 (335)
                      .+||+|||+|.+ |..++..|..+     +.+|++||+++  +..+.    +.    ..+.    ..++|..+.+ ++||
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal-~gAD   85 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRAL-DGAD   85 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH-TTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHh-CCCC
Confidence            579999999998 88887778773     45899999998  64332    11    1222    2346776666 8999


Q ss_pred             EEEEecCchh
Q 044593           91 VVLLSTSILS  100 (335)
Q Consensus        91 vVIlavp~~~  100 (335)
                      +||+++|...
T Consensus        86 ~VVitagv~~   95 (450)
T 1s6y_A           86 FVTTQFRVGG   95 (450)
T ss_dssp             EEEECCCTTH
T ss_pred             EEEEcCCCCC
Confidence            9999999643

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.95  E-value=1.5e-05  Score=77.80  Aligned_cols=82  Identities=18%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHc-CCeE-EEEcCCCCcHHHHH----hCC---Cceec----ChhhHhh-cCCCEE
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARH-HHTL-LVHSRSDHSPAVRQ----QLN---APFFA----DLNDLCE-LHPDVV   92 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~-G~~V-~~~dr~~~~~~~a~----~~g---~~~~~----~~~~~~~-~~aDvV   92 (335)
                      ..|+.+||+|||+|.||...+..|.+. +++| .++|++++..+.+.    +.|   ...++    +.++++. .+.|+|
T Consensus        16 ~~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V   95 (444)
T 2ixa_A           16 FNPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAV   95 (444)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEE
T ss_pred             CCCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEE
Confidence            456678999999999999999999875 5676 57899987654332    345   34566    8888872 269999


Q ss_pred             EEecCchhHHHHHhhc
Q 044593           93 LLSTSILSTQSVLKSI  108 (335)
Q Consensus        93 Ilavp~~~~~~vl~~l  108 (335)
                      ++|+|.....++....
T Consensus        96 ~i~tp~~~h~~~~~~a  111 (444)
T 2ixa_A           96 FVSSPWEWHHEHGVAA  111 (444)
T ss_dssp             EECCCGGGHHHHHHHH
T ss_pred             EEcCCcHHHHHHHHHH
Confidence            9999998866655543

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.95  E-value=9.4e-06  Score=77.67  Aligned_cols=78  Identities=14%  Similarity=0.290  Sum_probs=61.7

Q ss_pred             CCeEEEEccc-HHHHHHHHHHHHc-CCeE-EEEcCCCCcH-HHHHhCCCceecChhhHhh-cCCCEEEEecCchhHHHHH
Q 044593           31 SLKIAVIGFG-NFGQFLAKAFARH-HHTL-LVHSRSDHSP-AVRQQLNAPFFADLNDLCE-LHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        31 ~~kI~IIG~G-~mG~siA~~L~~~-G~~V-~~~dr~~~~~-~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~vl  105 (335)
                      ++||+|||+| .||..++..+.+. ++++ .++|++++.. +.+.+.|+..+.+.++++. .++|+|++|||+....+++
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~   81 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHV   81 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHH
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHH
Confidence            5799999999 9999999999875 4566 4789998654 4556678888889998872 2699999999998766666


Q ss_pred             hhc
Q 044593          106 KSI  108 (335)
Q Consensus       106 ~~l  108 (335)
                      ...
T Consensus        82 ~~a   84 (387)
T 3moi_A           82 VQA   84 (387)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=97.95  E-value=1.6e-05  Score=75.48  Aligned_cols=80  Identities=13%  Similarity=0.109  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcccHHHH-HHHHHHHHcCCeE-EEEcCCCCcH-HHHHhCC-CceecChhhHhh-cCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIGFGNFGQ-FLAKAFARHHHTL-LVHSRSDHSP-AVRQQLN-APFFADLNDLCE-LHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~-siA~~L~~~G~~V-~~~dr~~~~~-~~a~~~g-~~~~~~~~~~~~-~~aDvVIlavp~~~~~~  103 (335)
                      |+.+||||||+|.+|. .++..+...+.+| .++|++++.. +.+.+.| ...+++.++++. .+.|+|++|||...-.+
T Consensus        24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~  103 (361)
T 3u3x_A           24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAE  103 (361)
T ss_dssp             --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHH
T ss_pred             ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            4568999999999994 5777777778886 5779998754 4566676 457789998872 24899999999987666


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      ++...
T Consensus       104 ~~~~a  108 (361)
T 3u3x_A          104 LAIRA  108 (361)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66544

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.94  E-value=1.7e-05  Score=74.38  Aligned_cols=91  Identities=12%  Similarity=0.019  Sum_probs=63.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC----------CCceecChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL----------NAPFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~----------g~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      ..+||+|||+|.||+++|..++..|+  +|.++|++++..+ .+.++          .+..+++.++ + ++||+||++.
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~-~daDiVIita   97 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-S-AGSKLVVITA   97 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-C-SSCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-h-CCCCEEEEeC
Confidence            46899999999999999999999997  8999999876432 11111          1123456666 4 8999999986


Q ss_pred             Cch----------------hHHHHHhhccccccCCccEEEEcCC
Q 044593           97 SIL----------------STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        97 p~~----------------~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...                .+.++.+++. . ..++++++.+++
T Consensus        98 G~p~kpG~tR~dll~~N~~I~k~i~~~I~-k-~~P~a~ilvvtN  139 (330)
T 3ldh_A           98 GARQQEGESRLNLVQRNVNIFKFIIPNIV-K-HSPDCLKELHPE  139 (330)
T ss_dssp             SCCCCSSCCTTGGGHHHHHHHHHHHHHHH-H-HCTTCEEEECSS
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHH-h-hCCCceEEeCCC
Confidence            431                1344555553 2 367788877764

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=97.94  E-value=9.5e-06  Score=78.16  Aligned_cols=79  Identities=23%  Similarity=0.297  Sum_probs=60.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc---------CCeE-EEEcCCCCcH-HHHHhCCCc-eecChhhHhh-cCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH---------HHTL-LVHSRSDHSP-AVRQQLNAP-FFADLNDLCE-LHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~---------G~~V-~~~dr~~~~~-~~a~~~g~~-~~~~~~~~~~-~~aDvVIlav   96 (335)
                      +.+||||||+|.||...+.++++.         +.+| .++|++++.. +.+.+.|+. .++|.++++. .+.|+|++||
T Consensus        25 ~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~t  104 (412)
T 4gqa_A           25 ARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITS  104 (412)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECS
T ss_pred             ccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECC
Confidence            347999999999999999998874         2355 4679998754 456677874 6788888872 3689999999


Q ss_pred             CchhHHHHHhhc
Q 044593           97 SILSTQSVLKSI  108 (335)
Q Consensus        97 p~~~~~~vl~~l  108 (335)
                      |...-.++....
T Consensus       105 p~~~H~~~~~~a  116 (412)
T 4gqa_A          105 PNHLHYTMAMAA  116 (412)
T ss_dssp             CGGGHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            998866655543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.92  E-value=1e-05  Score=79.55  Aligned_cols=90  Identities=17%  Similarity=0.165  Sum_probs=62.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHH-HHhCCCce----ec---ChhhHhhcCCCEEEEecCchh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH-HHTLLVHSRSDHSPAV-RQQLNAPF----FA---DLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~-a~~~g~~~----~~---~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ++++|+|+|+|.+|..++..|.+. |++|++++|+++..+. +...++..    ..   ++.+++ .++|+||.|+|...
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l-~~~DvVIn~tp~~~  100 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVL-ADNDVVISLIPYTF  100 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHH-HTSSEEEECSCGGG
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHH-cCCCEEEECCchhh
Confidence            467899999999999999999998 7899999999765433 32224321    11   233445 68999999999875


Q ss_pred             HHHHHhhccccccCCccEEEEcCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...+...    .+..+..++|++.
T Consensus       101 ~~~v~~a----~l~~g~~vvd~~~  120 (467)
T 2axq_A          101 HPNVVKS----AIRTKTDVVTSSY  120 (467)
T ss_dssp             HHHHHHH----HHHHTCEEEECSC
T ss_pred             hHHHHHH----HHhcCCEEEEeec
Confidence            4444332    2446677888764

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=97.92  E-value=1.8e-05  Score=74.23  Aligned_cols=75  Identities=13%  Similarity=0.180  Sum_probs=58.8

Q ss_pred             CCCCCeEEEEcccHHHH-HHHHHHHHc-CCeE-EEEcCCCCcHHHHHhCCCceecChhhHhh--cCCCEEEEecCchhHH
Q 044593           28 KSTSLKIAVIGFGNFGQ-FLAKAFARH-HHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCE--LHPDVVLLSTSILSTQ  102 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~-siA~~L~~~-G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~--~~aDvVIlavp~~~~~  102 (335)
                      .|+++||+|||+|.||. ..+..+.+. +.+| .++|++++.      .|+..+++.++++.  .+.|+|++|+|...-.
T Consensus        22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~   95 (330)
T 4ew6_A           22 SMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRY   95 (330)
T ss_dssp             CCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHH
T ss_pred             cCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHH
Confidence            45678999999999998 788888875 5676 567988653      47777888888872  2599999999988866


Q ss_pred             HHHhhc
Q 044593          103 SVLKSI  108 (335)
Q Consensus       103 ~vl~~l  108 (335)
                      ++....
T Consensus        96 ~~~~~a  101 (330)
T 4ew6_A           96 EAAYKA  101 (330)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=97.92  E-value=2.8e-05  Score=72.48  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeE-EEEcCCCCcHHHHHhC-CCceecChhhHh----------hcCCCEEEEec
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTL-LVHSRSDHSPAVRQQL-NAPFFADLNDLC----------ELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V-~~~dr~~~~~~~a~~~-g~~~~~~~~~~~----------~~~aDvVIlav   96 (335)
                      .++||||||+ |.||...+.++.+.+.++ .++|++++....+... +...+++.++++          ..+.|+|++||
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~t   81 (318)
T 3oa2_A            2 HMKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICS   81 (318)
T ss_dssp             -CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECS
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECC
Confidence            3689999999 789999999999988875 5779998764433333 445677777764          25799999999


Q ss_pred             CchhHHHHHhhc
Q 044593           97 SILSTQSVLKSI  108 (335)
Q Consensus        97 p~~~~~~vl~~l  108 (335)
                      |+..-.++....
T Consensus        82 P~~~H~~~~~~a   93 (318)
T 3oa2_A           82 PNYLHYPHIAAG   93 (318)
T ss_dssp             CGGGHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            998876666554

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.91  E-value=2.1e-05  Score=73.34  Aligned_cols=93  Identities=23%  Similarity=0.226  Sum_probs=65.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHH--cCCeE-EEEcCCCCc--HHHHHhCCCce-ecChhhHhh----cCCCEEEEecCch
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFAR--HHHTL-LVHSRSDHS--PAVRQQLNAPF-FADLNDLCE----LHPDVVLLSTSIL   99 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~--~G~~V-~~~dr~~~~--~~~a~~~g~~~-~~~~~~~~~----~~aDvVIlavp~~   99 (335)
                      +.+||+|||+|.||..++..+.+  .+.++ .++|++++.  .+.+.+.|+.. ..+.++++.    .++|+||+|||..
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~   82 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS   82 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChH
Confidence            45799999999999999999965  34554 567999876  46677788763 344555541    3589999999977


Q ss_pred             hHHHHHhhccccccCCccEEEEcCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...+.......  .++|..|++...
T Consensus        83 ~h~~~a~~al~--a~~Gk~Vi~ekp  105 (312)
T 1nvm_B           83 AHVQNEALLRQ--AKPGIRLIDLTP  105 (312)
T ss_dssp             HHHHHHHHHHH--HCTTCEEEECST
T ss_pred             HHHHHHHHHHH--hCCCCEEEEcCc
Confidence            66666555421  123778888543

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.90  E-value=5.8e-06  Score=75.58  Aligned_cols=92  Identities=18%  Similarity=0.268  Sum_probs=64.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCc-HHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH----
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHS-PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS----  103 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~-~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~----  103 (335)
                      ..+++.|||+|.+|.+++.+|.+.|. +|++++|+.+. .+.+.+.+.....+..  . .++|+||.|||......    
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~-~~~DivInaTp~gm~~~~~~~  194 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--N-QQADILVNVTSIGMKGGKEEM  194 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--T-CCCSEEEECSSTTCTTSTTTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--c-ccCCEEEECCCCCccCccccC
Confidence            35689999999999999999999997 89999999754 3445554543322222  3 67999999999775321    


Q ss_pred             HHhhccccccCCccEEEEcCCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .. .+....++++.+|+|+...
T Consensus       195 ~~-~~~~~~l~~~~~v~DlvY~  215 (271)
T 1npy_A          195 DL-AFPKAFIDNASVAFDVVAM  215 (271)
T ss_dssp             SC-SSCHHHHHHCSEEEECCCS
T ss_pred             CC-CCCHHHcCCCCEEEEeecC
Confidence            11 1211235578899999753

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=97.89  E-value=3.6e-05  Score=71.53  Aligned_cols=79  Identities=14%  Similarity=0.123  Sum_probs=59.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeE-EEEcCCCCcHHHHHhC-CCceecChhhHh---------hcCCCEEEEecC
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTL-LVHSRSDHSPAVRQQL-NAPFFADLNDLC---------ELHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V-~~~dr~~~~~~~a~~~-g~~~~~~~~~~~---------~~~aDvVIlavp   97 (335)
                      .++||+|||+ |.||...+.++.+.+.++ .++|++++....+... +...+++.++++         ..+.|+|++|||
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP   81 (312)
T 3o9z_A            2 HMTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP   81 (312)
T ss_dssp             -CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred             CceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence            3689999999 789999999999988875 5779998764433333 445677777764         257999999999


Q ss_pred             chhHHHHHhhc
Q 044593           98 ILSTQSVLKSI  108 (335)
Q Consensus        98 ~~~~~~vl~~l  108 (335)
                      ...-.++....
T Consensus        82 ~~~H~~~~~~a   92 (312)
T 3o9z_A           82 NHLHYPQIRMA   92 (312)
T ss_dssp             GGGHHHHHHHH
T ss_pred             chhhHHHHHHH
Confidence            99876666554

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.88  E-value=3.5e-05  Score=71.75  Aligned_cols=90  Identities=12%  Similarity=0.146  Sum_probs=59.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHH-HHHhC--------CCceecChhhHhhcCCCEEEEecCchh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPA-VRQQL--------NAPFFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~-~a~~~--------g~~~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      |||+|||+|.+|.+++..|...+  .+|.++|++++..+ .+.++        .+....+..+.+ ++||+||++.+...
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~-~~aD~Vii~ag~~~   79 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDL-EGARAVVLAAGVAQ   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGG-TTEEEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHh-CCCCEEEECCCCCC
Confidence            69999999999999999999887  48999999975443 12221        112222234445 89999999875432


Q ss_pred             ----------------HHHHHhhccccccCCccEEEEcCC
Q 044593          101 ----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 ----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                                      +.++.+.+. . ..++++|+.++.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~-~-~~p~a~iiv~tN  117 (310)
T 2xxj_A           80 RPGETRLQLLDRNAQVFAQVVPRVL-E-AAPEAVLLVATN  117 (310)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHH-H-HCTTCEEEECSS
T ss_pred             CCCcCHHHHHHhhHHHHHHHHHHHH-H-HCCCcEEEEecC
Confidence                            233444442 2 357777777743

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.88  E-value=4.7e-05  Score=74.76  Aligned_cols=90  Identities=13%  Similarity=0.191  Sum_probs=69.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH--HHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST--QSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~--~~vl~  106 (335)
                      ..+++++|+|+|.||..+|..|+..|.+|+++|+++.....+...|+. ..+.+++. ..+|+|+.++....+  .+.+ 
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~d-v~~lee~~-~~aDvVi~atG~~~vl~~e~l-  339 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQ-VLTLEDVV-SEADIFVTTTGNKDIIMLDHM-  339 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGTT-TTCSEEEECSSCSCSBCHHHH-
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCc-cCCHHHHH-HhcCEEEeCCCChhhhhHHHH-
Confidence            457899999999999999999999999999999998766556666754 34566766 789999998764432  2233 


Q ss_pred             hccccccCCccEEEEcCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~Sv  125 (335)
                          ..++++.+|++++..
T Consensus       340 ----~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          340 ----KKMKNNAIVCNIGHF  354 (488)
T ss_dssp             ----TTSCTTEEEEESSST
T ss_pred             ----HhcCCCeEEEEcCCC
Confidence                246789999999754

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.86  E-value=3.3e-05  Score=62.00  Aligned_cols=104  Identities=14%  Similarity=0.136  Sum_probs=75.1

Q ss_pred             CCCeEEEEcc----cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           30 TSLKIAVIGF----GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        30 ~~~kI~IIG~----G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      +.++|+|||+    |.+|..+.+.|.+.||+|+-+++..+..     .|...+.++.++- . .|++++++|...+.+++
T Consensus         3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp-~-vDlavi~~p~~~v~~~v   75 (122)
T 3ff4_A            3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIE-G-VDTVTLYINPQNQLSEY   75 (122)
T ss_dssp             CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCT-T-CCEEEECSCHHHHGGGH
T ss_pred             CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCC-C-CCEEEEEeCHHHHHHHH
Confidence            3568999996    7799999999999999999888765444     3667777888875 6 99999999999999999


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEe
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC  145 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~  145 (335)
                      +++..  .....+|+..+.......+..++   .+.++++
T Consensus        76 ~e~~~--~g~k~v~~~~G~~~~e~~~~a~~---~Girvv~  110 (122)
T 3ff4_A           76 NYILS--LKPKRVIFNPGTENEELEEILSE---NGIEPVI  110 (122)
T ss_dssp             HHHHH--HCCSEEEECTTCCCHHHHHHHHH---TTCEEEE
T ss_pred             HHHHh--cCCCEEEECCCCChHHHHHHHHH---cCCeEEC
Confidence            88742  33445666544333333333322   4567764

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.85  E-value=6.2e-05  Score=69.50  Aligned_cols=89  Identities=12%  Similarity=0.148  Sum_probs=58.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC-------CC----ceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL-------NA----PFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~-------g~----~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |||+|||+|.+|+++|..|..++.  ++.++|.+++..+ .+.++       +.    ....+.++ + ++||+||++.-
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~-~-~~aDvVvitAG   78 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSL-L-KGSEIIVVTAG   78 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGG-G-TTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHH-h-CCCCEEEEecC
Confidence            899999999999999999998875  8999999874321 22221       11    12345554 4 79999999763


Q ss_pred             chh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           98 ILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...                +.++.+.+. . ..|+++|+-+++
T Consensus        79 ~prkpGmtR~dLl~~Na~I~~~i~~~i~-~-~~p~aivlvvsN  119 (294)
T 2x0j_A           79 LARKPGMTRLDLAHKNAGIIKDIAKKIV-E-NAPESKILVVTN  119 (294)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHHHHHHH-T-TSTTCEEEECSS
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHH-h-cCCceEEEEecC
Confidence            211                234444553 2 346677776654

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=97.85  E-value=1.4e-05  Score=75.77  Aligned_cols=81  Identities=21%  Similarity=0.197  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcC--------CeE-EEEcCCCCcH-HHHHhCCCc-eecChhhHhh-cCCCEEEEe
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHH--------HTL-LVHSRSDHSP-AVRQQLNAP-FFADLNDLCE-LHPDVVLLS   95 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G--------~~V-~~~dr~~~~~-~~a~~~g~~-~~~~~~~~~~-~~aDvVIla   95 (335)
                      .|+..||||||+|.||...+.++.+..        .+| .++|++++.. +.+.+.|+. .++|.++++. .+.|+|++|
T Consensus         3 ~M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~   82 (390)
T 4h3v_A            3 AMTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVC   82 (390)
T ss_dssp             -CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEEC
T ss_pred             CCCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEe
Confidence            455568999999999999988887642        255 5779998754 456677874 6788888862 368999999


Q ss_pred             cCchhHHHHHhhc
Q 044593           96 TSILSTQSVLKSI  108 (335)
Q Consensus        96 vp~~~~~~vl~~l  108 (335)
                      ||...-.++....
T Consensus        83 tP~~~H~~~~~~a   95 (390)
T 4h3v_A           83 TPGDSHAEIAIAA   95 (390)
T ss_dssp             SCGGGHHHHHHHH
T ss_pred             CChHHHHHHHHHH
Confidence            9999866665543

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.84  E-value=8.5e-06  Score=71.94  Aligned_cols=79  Identities=14%  Similarity=0.226  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHH--HHHcCCeEE-EEcCCCCcHHH-HHhCCCceecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKA--FARHHHTLL-VHSRSDHSPAV-RQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~--L~~~G~~V~-~~dr~~~~~~~-a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      ...++|+|||+|.+|..+++.  +...|++++ ++|.+++.... +...++...+++.+++ ++.|++++|+|.....++
T Consensus        83 ~~~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli-~~~D~ViIAvPs~~~~ei  161 (215)
T 2vt3_A           83 DEMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHV-KDESVAILTVPAVAAQSI  161 (215)
T ss_dssp             C---CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHC-SSCCEEEECSCHHHHHHH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHH-HhCCEEEEecCchhHHHH
Confidence            345789999999999999994  445678765 56998875431 1112222345667776 445999999998877777


Q ss_pred             Hhhc
Q 044593          105 LKSI  108 (335)
Q Consensus       105 l~~l  108 (335)
                      ...+
T Consensus       162 ~~~l  165 (215)
T 2vt3_A          162 TDRL  165 (215)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.83  E-value=3.8e-05  Score=70.12  Aligned_cols=79  Identities=24%  Similarity=0.314  Sum_probs=58.4

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHc-CCeEEE-EcCCCCcH---H---HH-HhCCCceecChhhHhhcCCCEEEEecCc
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARH-HHTLLV-HSRSDHSP---A---VR-QQLNAPFFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~-G~~V~~-~dr~~~~~---~---~a-~~~g~~~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      |+++||+|+| +|.||..+++.+.+. ++++++ +|++....   +   .+ ...|+..+.++++++ .++|+||-++++
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll-~~~DVVIDfT~p   83 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVC-AEADYLIDFTLP   83 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHH-HHCSEEEECSCH
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHh-cCCCEEEEcCCH
Confidence            5678999999 899999999999875 567765 68875321   1   00 112566678888887 689999999998


Q ss_pred             hhHHHHHhhc
Q 044593           99 LSTQSVLKSI  108 (335)
Q Consensus        99 ~~~~~vl~~l  108 (335)
                      ....+.+...
T Consensus        84 ~a~~~~~~~a   93 (272)
T 4f3y_A           84 EGTLVHLDAA   93 (272)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8877777655

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.81  E-value=6.2e-05  Score=69.28  Aligned_cols=76  Identities=12%  Similarity=0.188  Sum_probs=59.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeEE-EEcCCCCcHHHHHhCCCceecChhhHhhc--CCCEEEEecCchhHHHHH
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLL-VHSRSDHSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp~~~~~~vl  105 (335)
                      +..||+|+|+ |.||..+++.+.+.|++++ .+++.....   ...|+..+.+.+++. +  ++|+++++||+....+++
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~---~~~G~~vy~sl~el~-~~~~~D~viI~tP~~~~~~~~   81 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT---THLGLPVFNTVREAV-AATGATASVIYVPAPFCKDSI   81 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---EETTEEEESSHHHHH-HHHCCCEEEECCCGGGHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc---eeCCeeccCCHHHHh-hcCCCCEEEEecCHHHHHHHH
Confidence            4679999998 9999999999999899843 445432101   135777888888886 5  899999999999998888


Q ss_pred             hhcc
Q 044593          106 KSIP  109 (335)
Q Consensus       106 ~~l~  109 (335)
                      .+..
T Consensus        82 ~ea~   85 (288)
T 2nu8_A           82 LEAI   85 (288)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8763

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.79  E-value=1.3e-05  Score=78.66  Aligned_cols=78  Identities=13%  Similarity=0.206  Sum_probs=58.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-HhCCCce----ecChh---hHhhcCCCEEEEecCchhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-QQLNAPF----FADLN---DLCELHPDVVLLSTSILST  101 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-~~~g~~~----~~~~~---~~~~~~aDvVIlavp~~~~  101 (335)
                      ..|||.|+|+|.+|..+|+.|.+.||+|+++|+|++..+.+ .++++..    .++++   ++-.++||++|.+|+.+..
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De~   81 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDET   81 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHHH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChHH
Confidence            57899999999999999999999999999999999877644 4556532    22322   2212689999999998875


Q ss_pred             HHHHhh
Q 044593          102 QSVLKS  107 (335)
Q Consensus       102 ~~vl~~  107 (335)
                      .-+...
T Consensus        82 Nl~~~~   87 (461)
T 4g65_A           82 NMAACQ   87 (461)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.79  E-value=1.8e-05  Score=73.74  Aligned_cols=92  Identities=17%  Similarity=0.188  Sum_probs=65.5

Q ss_pred             CCCCCeEEEEcccHH-HHHHHHHHHHcCCeEEEEcCCCCc-HHHHHhCCC--c-e-----e--cChhhHhhcCCCEEEEe
Q 044593           28 KSTSLKIAVIGFGNF-GQFLAKAFARHHHTLLVHSRSDHS-PAVRQQLNA--P-F-----F--ADLNDLCELHPDVVLLS   95 (335)
Q Consensus        28 ~~~~~kI~IIG~G~m-G~siA~~L~~~G~~V~~~dr~~~~-~~~a~~~g~--~-~-----~--~~~~~~~~~~aDvVIla   95 (335)
                      ...+.++.|||.|.| |..+|..|...|..|+++||+... ...+...+.  . .     +  .++.+.+ .++|+||.|
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l-~~ADIVIsA  252 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCS-LDSDVVITG  252 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHH-HHCSEEEEC
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHh-ccCCEEEEC
Confidence            346789999999975 999999999999999999998432 122222221  1 1     1  4566667 789999999


Q ss_pred             cCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           96 TSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        96 vp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      |+....  +   +....+++|++|+|+++-
T Consensus       253 tg~p~~--v---I~~e~vk~GavVIDVgi~  277 (320)
T 1edz_A          253 VPSENY--K---FPTEYIKEGAVCINFACT  277 (320)
T ss_dssp             CCCTTC--C---BCTTTSCTTEEEEECSSS
T ss_pred             CCCCcc--e---eCHHHcCCCeEEEEcCCC
Confidence            986431  1   222457899999999864

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=97.79  E-value=1.6e-05  Score=75.94  Aligned_cols=70  Identities=13%  Similarity=0.334  Sum_probs=56.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc--CCeEE-EEcCCCCc-HHHHHhCCCceecChhhHhhcCCCEEEEecCchhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH--HHTLL-VHSRSDHS-PAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~--G~~V~-~~dr~~~~-~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      ...||+|||+| +|...+.++++.  +++++ ++|++++. .+.+.+.|+..++|.++++ ++.|++++|||....
T Consensus         6 ~~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~-~~~D~v~i~~p~~~h   79 (372)
T 4gmf_A            6 PKQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQIT-GMPDIACIVVRSTVA   79 (372)
T ss_dssp             -CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCC-SCCSEEEECCC--CT
T ss_pred             CCCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHh-cCCCEEEEECCCccc
Confidence            46799999999 899888888775  56765 67999865 4678889999889999998 799999999998653

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.78  E-value=1.6e-05  Score=73.04  Aligned_cols=116  Identities=10%  Similarity=0.094  Sum_probs=72.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL-  105 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl-  105 (335)
                      ...+++.|+|+|.+|.+++..|.+.|. +|++++|+.+..+ .+.+.+.....++.+ +  ++|+||.|||.......- 
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l--~~DivInaTp~Gm~~~~~~  196 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L--KGDVIINCTPKGMYPKEGE  196 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C--CCSEEEECSSTTSTTSTTC
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c--cCCEEEECCccCccCCCcc
Confidence            356799999999999999999999998 8999999976543 222221111112222 1  699999999976422100 


Q ss_pred             hhccccccCCccEEEEcCCC--CchHHHHHHhhCCCCCceEeccccC
Q 044593          106 KSIPFQRLKRSTLFVDVLSV--KEFPRNLFLKYLPQDFDILCTHPMF  150 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~Sv--K~~~~~~l~~~l~~~~~~v~~HPma  150 (335)
                      ..+....++++.+|+|+.-.  .+..++..++   .+...+.+-.|.
T Consensus       197 ~pi~~~~l~~~~~v~DlvY~P~~T~ll~~A~~---~G~~~~~Gl~ML  240 (282)
T 3fbt_A          197 SPVDKEVVAKFSSAVDLIYNPVETLFLKYARE---SGVKAVNGLYML  240 (282)
T ss_dssp             CSSCHHHHTTCSEEEESCCSSSSCHHHHHHHH---TTCEEECSHHHH
T ss_pred             CCCCHHHcCCCCEEEEEeeCCCCCHHHHHHHH---CcCeEeCcHHHH
Confidence            00222346788999998633  2344444443   244555554444

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.78  E-value=6.4e-05  Score=68.40  Aligned_cols=76  Identities=11%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..++++.|||.|. +|..+|..|.+.|..|+++++..              .++.+.+ .++|+||.+++...   +   
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t--------------~~L~~~~-~~ADIVI~Avg~p~---~---  206 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT--------------KDIGSMT-RSSKIVVVAVGRPG---F---  206 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHH-HHSSEEEECSSCTT---C---
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc--------------ccHHHhh-ccCCEEEECCCCCc---c---
Confidence            5789999999875 89999999999999999998753              3455666 78999999998643   2   


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                      +....+++|++|+|++..
T Consensus       207 I~~~~vk~GavVIDvgi~  224 (276)
T 3ngx_A          207 LNREMVTPGSVVIDVGIN  224 (276)
T ss_dssp             BCGGGCCTTCEEEECCCE
T ss_pred             ccHhhccCCcEEEEeccC
Confidence            223468999999999864

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.76  E-value=7.7e-05  Score=68.71  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..++++.|||.|. +|..+|..|.+.|..|+++++.....+            +.+.+ .+||+||.+++...   +   
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~------------l~~~~-~~ADIVI~Avg~p~---~---  223 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED------------MIDYL-RTADIVIAAMGQPG---Y---  223 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH------------HHHHH-HTCSEEEECSCCTT---C---
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch------------hhhhh-ccCCEEEECCCCCC---C---
Confidence            4678999999876 799999999999999999987543221            11556 79999999999643   1   


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                      +....+++|++|+|++..
T Consensus       224 I~~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          224 VKGEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             BCGGGSCTTCEEEECCCE
T ss_pred             CcHHhcCCCcEEEEEecc
Confidence            223468999999999853

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.75  E-value=5.5e-05  Score=70.82  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=47.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcC--CeEEEEcCCCCcHHHH---HhCCC----ce---ecChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHH--HTLLVHSRSDHSPAVR---QQLNA----PF---FADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~~a---~~~g~----~~---~~~~~~~~~~~aDvVIlav   96 (335)
                      +.|||+||| .|.+|.+++..|...|  ++|+++|++++ ...+   .....    ..   +++..+++ +++|+||++.
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~dL~~~~~~~~v~~~~~t~d~~~al-~gaDvVi~~a   84 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTADISHMDTGAVVRGFLGQQQLEAAL-TGMDLIIVPA   84 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHHHHHTSCSSCEEEEEESHHHHHHHH-TTCSEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHHHhhcccccceEEEEeCCCCHHHHc-CCCCEEEEcC
Confidence            468999999 7999999999999988  78999998875 2112   11111    11   22445656 8999999987


Q ss_pred             C
Q 044593           97 S   97 (335)
Q Consensus        97 p   97 (335)
                      +
T Consensus        85 g   85 (326)
T 1smk_A           85 G   85 (326)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=97.74  E-value=3.8e-05  Score=73.12  Aligned_cols=80  Identities=16%  Similarity=0.232  Sum_probs=60.6

Q ss_pred             CCCCeEEEEc-ccHHHHH-HH----HHHHHcCC-eE----------EEEcCCCCcH-HHHHhCCCc-eecChhhHhh-cC
Q 044593           29 STSLKIAVIG-FGNFGQF-LA----KAFARHHH-TL----------LVHSRSDHSP-AVRQQLNAP-FFADLNDLCE-LH   88 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~s-iA----~~L~~~G~-~V----------~~~dr~~~~~-~~a~~~g~~-~~~~~~~~~~-~~   88 (335)
                      ++.+||+||| +|.||.. .+    ..+.+.+. .+          .++|++++.. +.+.+.|+. .++|.++++. .+
T Consensus         4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~   83 (383)
T 3oqb_A            4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKN   83 (383)
T ss_dssp             CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSS
T ss_pred             CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCC
Confidence            4567999999 9999998 77    77777652 22          4899998764 556778884 6789998872 34


Q ss_pred             CCEEEEecCchhHHHHHhhc
Q 044593           89 PDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        89 aDvVIlavp~~~~~~vl~~l  108 (335)
                      .|+|++|+|.....++....
T Consensus        84 iD~V~i~tp~~~h~~~~~~a  103 (383)
T 3oqb_A           84 DTMFFDAATTQARPGLLTQA  103 (383)
T ss_dssp             CCEEEECSCSSSSHHHHHHH
T ss_pred             CCEEEECCCchHHHHHHHHH
Confidence            89999999988766655543

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.73  E-value=0.00011  Score=69.36  Aligned_cols=89  Identities=18%  Similarity=0.173  Sum_probs=60.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC-CeE-EEEcCCCCcH-HHHHhCCCceec-----------------ChhhHhhcCCCE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH-HTL-LVHSRSDHSP-AVRQQLNAPFFA-----------------DLNDLCELHPDV   91 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G-~~V-~~~dr~~~~~-~~a~~~g~~~~~-----------------~~~~~~~~~aDv   91 (335)
                      .||||+|+|.||..+++.|.+.. .+| .+.|+++... ..+...|+..+.                 +.+++. .++|+
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~-~~vDv   80 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI-KTSDI   80 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH-HHCSE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhh-cCCCE
Confidence            58999999999999999998754 466 4568876543 344555554332                 222333 47999


Q ss_pred             EEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           92 VLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        92 VIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ||.|+|.....+.....    ++.|..++|.++-
T Consensus        81 V~~aTp~~~s~~~a~~~----~~aG~kvV~~sa~  110 (340)
T 1b7g_O           81 VVDTTPNGVGAQYKPIY----LQLQRNAIFQGGE  110 (340)
T ss_dssp             EEECCSTTHHHHHHHHH----HHTTCEEEECTTS
T ss_pred             EEECCCCchhHHHHHHH----HHcCCeEEEeCCC
Confidence            99999998776666543    3356666776554

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.73  E-value=5.1e-05  Score=70.76  Aligned_cols=106  Identities=11%  Similarity=0.082  Sum_probs=67.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCC---cHH-HHHh----CCCc--e--ecC---hhhHhhcCCCEE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDH---SPA-VRQQ----LNAP--F--FAD---LNDLCELHPDVV   92 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~---~~~-~a~~----~g~~--~--~~~---~~~~~~~~aDvV   92 (335)
                      ...+++.|+|+|.+|.+++..|.+.|. +|++++|+++   ..+ .+.+    .+..  .  ..+   +.+.+ .++|+|
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l-~~aDiI  230 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEI-AESVIF  230 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHH-HTCSEE
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhh-cCCCEE
Confidence            357899999999999999999999998 8999999943   222 2222    2221  1  122   23344 689999


Q ss_pred             EEecCchhHHHH-Hhhc-cccccCCccEEEEcCCCC--chHHHHHHh
Q 044593           93 LLSTSILSTQSV-LKSI-PFQRLKRSTLFVDVLSVK--EFPRNLFLK  135 (335)
Q Consensus        93 Ilavp~~~~~~v-l~~l-~~~~l~~~~iVvd~~SvK--~~~~~~l~~  135 (335)
                      |-|||....... ...+ ....++++.+|+|+.-..  +..++..++
T Consensus       231 INaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~~T~ll~~A~~  277 (315)
T 3tnl_A          231 TNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEE  277 (315)
T ss_dssp             EECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCSSSSCHHHHHHHH
T ss_pred             EECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCCCCHHHHHHHH
Confidence            999997643210 0011 123477889999986432  344444443

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.72  E-value=0.00012  Score=68.84  Aligned_cols=75  Identities=20%  Similarity=0.213  Sum_probs=54.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC-CeE-EEEcCCCCcH-HHHHhCCC------------------ceecChhhHhhcCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH-HTL-LVHSRSDHSP-AVRQQLNA------------------PFFADLNDLCELHP   89 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G-~~V-~~~dr~~~~~-~~a~~~g~------------------~~~~~~~~~~~~~a   89 (335)
                      ++||||+|+|.||..+++.|.+.. .+| .+.|++++.. ..+...|+                  ....+.+++. .++
T Consensus         2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~-~~v   80 (334)
T 2czc_A            2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL-EKV   80 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH-TTC
T ss_pred             CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc-cCC
Confidence            369999999999999999998764 566 4568876654 33444443                  2334667776 689


Q ss_pred             CEEEEecCchhHHHHHh
Q 044593           90 DVVLLSTSILSTQSVLK  106 (335)
Q Consensus        90 DvVIlavp~~~~~~vl~  106 (335)
                      |+|++|+|.....+...
T Consensus        81 DvV~~aTp~~~h~~~a~   97 (334)
T 2czc_A           81 DIIVDATPGGIGAKNKP   97 (334)
T ss_dssp             SEEEECCSTTHHHHHHH
T ss_pred             CEEEECCCccccHHHHH
Confidence            99999999886444443

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.71  E-value=8.7e-05  Score=69.65  Aligned_cols=92  Identities=13%  Similarity=0.118  Sum_probs=62.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC--C--------CceecChhhHhhcCCCEEEEe
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL--N--------APFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~--g--------~~~~~~~~~~~~~~aDvVIla   95 (335)
                      ...+||+|||+|.||.++|..|...|+  +|.++|++++..+ .+.++  .        +....+.++ + ++||+||++
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~-~-~~aDiVvi~   94 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV-T-ANSKLVIIT   94 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG-G-TTEEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH-h-CCCCEEEEc
Confidence            467899999999999999999999887  8999999875432 12111  1        112345554 4 799999998


Q ss_pred             cCch----------------hHHHHHhhccccccCCccEEEEcCC
Q 044593           96 TSIL----------------STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        96 vp~~----------------~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ....                .+.++.+.+. . ..|+.+++.+++
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~-~-~~p~a~vlvvtN  137 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVV-K-YSPQCKLLIVSN  137 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHH-H-HCTTCEEEECSS
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHH-H-HCCCeEEEEecC
Confidence            6321                1234444443 2 367778777764

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.71  E-value=0.00013  Score=66.72  Aligned_cols=76  Identities=17%  Similarity=0.238  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..++++.|||.|. +|..+|..|...|..|+++.+..              .++.+.+ .++|+||.+++....      
T Consensus       159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~-~~ADIVI~Avg~p~~------  217 (285)
T 3l07_A          159 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHT-TKADILIVAVGKPNF------  217 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHH-TTCSEEEECCCCTTC------
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHhc-ccCCEEEECCCCCCC------
Confidence            4678999999877 79999999999999999997653              2455666 899999999985432      


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                      +....+++|++|+|++.-
T Consensus       218 I~~~~vk~GavVIDvgi~  235 (285)
T 3l07_A          218 ITADMVKEGAVVIDVGIN  235 (285)
T ss_dssp             BCGGGSCTTCEEEECCCE
T ss_pred             CCHHHcCCCcEEEEeccc
Confidence            223468999999999854

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.71  E-value=9.9e-05  Score=67.57  Aligned_cols=76  Identities=21%  Similarity=0.250  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+.++.|||.|. +|..+|..|...|..|+++++..              .++.+.+ .++|+||.+++....      
T Consensus       157 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~-~~ADIVI~Avg~p~l------  215 (288)
T 1b0a_A          157 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHV-ENADLLIVAVGKPGF------  215 (288)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHH-HHCSEEEECSCCTTC------
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHh-ccCCEEEECCCCcCc------
Confidence            4678999999996 69999999999999999998654              2445566 789999999996542      


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                      +....+++|++|+|++.-
T Consensus       216 I~~~~vk~GavVIDVgi~  233 (288)
T 1b0a_A          216 IPGDWIKEGAIVIDVGIN  233 (288)
T ss_dssp             BCTTTSCTTCEEEECCCE
T ss_pred             CCHHHcCCCcEEEEccCC
Confidence            223457899999999854

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.70  E-value=0.00015  Score=66.75  Aligned_cols=76  Identities=13%  Similarity=0.167  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+.++.|||.|. +|..+|..|...|..|+++++..              .++.+.+ .+||+||.|++....      
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~-~~ADIVI~Avg~p~~------  221 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEV-NKGDILVVATGQPEM------  221 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHH-TTCSEEEECCCCTTC------
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc--------------ccHHHHh-ccCCEEEECCCCccc------
Confidence            4578999999996 79999999999999999998653              3455666 899999999997542      


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                      +....+++|++|+|++.-
T Consensus       222 I~~~~vk~GavVIDVgi~  239 (301)
T 1a4i_A          222 VKGEWIKPGAIVIDCGIN  239 (301)
T ss_dssp             BCGGGSCTTCEEEECCCB
T ss_pred             CCHHHcCCCcEEEEccCC
Confidence            323457899999999863

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.70  E-value=0.00015  Score=66.33  Aligned_cols=76  Identities=18%  Similarity=0.230  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..++++.|||.|. +|..+|..|...|..|+++++...              ++.+.+ .++|+||.+++....      
T Consensus       158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~--------------~L~~~~-~~ADIVI~Avg~p~~------  216 (285)
T 3p2o_A          158 LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK--------------DLSLYT-RQADLIIVAAGCVNL------  216 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------CHHHHH-TTCSEEEECSSCTTC------
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCch--------------hHHHHh-hcCCEEEECCCCCCc------
Confidence            4678999999877 699999999999999999987542              445666 899999999985432      


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                      +....+++|++|+|++.-
T Consensus       217 I~~~~vk~GavVIDVgi~  234 (285)
T 3p2o_A          217 LRSDMVKEGVIVVDVGIN  234 (285)
T ss_dssp             BCGGGSCTTEEEEECCCE
T ss_pred             CCHHHcCCCeEEEEeccC
Confidence            223568999999999854

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.70  E-value=7.3e-05  Score=69.61  Aligned_cols=117  Identities=11%  Similarity=0.073  Sum_probs=72.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCc---HH-HHHh----CCCc--e--ecCh---hhHhhcCCCEE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHS---PA-VRQQ----LNAP--F--FADL---NDLCELHPDVV   92 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~---~~-~a~~----~g~~--~--~~~~---~~~~~~~aDvV   92 (335)
                      ...+++.|+|+|.+|.+++..|.+.|. +|++++|+++.   .+ .+.+    .+..  .  ..+.   .+.+ .++|+|
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l-~~~DiI  224 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEAL-ASADIL  224 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHH-HHCSEE
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhc-cCceEE
Confidence            356899999999999999999999998 89999999443   22 2221    2221  1  1232   3334 679999


Q ss_pred             EEecCchhHHHHHhhc--cccccCCccEEEEcCCC--CchHHHHHHhhCCCCCceEecccc
Q 044593           93 LLSTSILSTQSVLKSI--PFQRLKRSTLFVDVLSV--KEFPRNLFLKYLPQDFDILCTHPM  149 (335)
Q Consensus        93 Ilavp~~~~~~vl~~l--~~~~l~~~~iVvd~~Sv--K~~~~~~l~~~l~~~~~~v~~HPm  149 (335)
                      |-|||.......-..+  ....++++.+|.|+.-.  .+..++..++   .+...+.+..|
T Consensus       225 INaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~---~G~~~~~Gl~M  282 (312)
T 3t4e_A          225 TNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTKLLQQAQQ---AGCKTIDGYGM  282 (312)
T ss_dssp             EECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSSCHHHHHHHH---TTCEEECHHHH
T ss_pred             EECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCCCHHHHHHHH---CCCeEECcHHH
Confidence            9999987421100111  11346788999998643  2344444443   24455544433

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.70  E-value=4.9e-05  Score=72.27  Aligned_cols=70  Identities=17%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCc
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      ...+++|+|+|+|+||..+|+.|.+.|++|+++|++++..+ .+.+.|.... +.+++...+||+++.|...
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~  240 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALG  240 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchH
Confidence            35688999999999999999999999999999999986554 4444565443 3344432489999987533

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=97.68  E-value=6.6e-05  Score=70.69  Aligned_cols=91  Identities=16%  Similarity=0.155  Sum_probs=61.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc-CCeEE-EEcCCCCcH-HHHHhCC------------------CceecChhhHhhcCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH-HHTLL-VHSRSDHSP-AVRQQLN------------------APFFADLNDLCELHP   89 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~-G~~V~-~~dr~~~~~-~~a~~~g------------------~~~~~~~~~~~~~~a   89 (335)
                      ++||+|+|+|.||..+++.|.+. +++++ +.|+++... ..+...|                  +....+..++. .++
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~-~~v   79 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML-DEA   79 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH-HTC
T ss_pred             CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHh-cCC
Confidence            35899999999999999999874 45764 457765533 2233222                  22222445555 689


Q ss_pred             CEEEEecCchhHHHHHhhccccccCCccEEEEcCCCC
Q 044593           90 DVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus        90 DvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK  126 (335)
                      |+||.|+|.....+....+    ++.|..|+|.++.+
T Consensus        80 DvV~~atp~~~~~~~a~~~----l~aG~~VId~sp~~  112 (337)
T 1cf2_P           80 DIVIDCTPEGIGAKNLKMY----KEKGIKAIFQGGEK  112 (337)
T ss_dssp             SEEEECCSTTHHHHHHHHH----HHHTCCEEECTTSC
T ss_pred             CEEEECCCchhhHHHHHHH----HHcCCEEEEecCCC
Confidence            9999999998776666544    33456677876653

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=97.68  E-value=3.6e-05  Score=70.94  Aligned_cols=85  Identities=18%  Similarity=0.274  Sum_probs=58.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHH----cCCeEE-EEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecCchhH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFAR----HHHTLL-VHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTSILST  101 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~----~G~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~  101 (335)
                      .++++||+|||+|.||...+..+.+    .+.+++ ++|+++.    +...|+. ..+.++++. .+.|+|++|||....
T Consensus         4 ~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~----a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H   78 (294)
T 1lc0_A            4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL----GSLDEVR-QISLEDALRSQEIDVAYICSESSSH   78 (294)
T ss_dssp             CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC----CEETTEE-BCCHHHHHHCSSEEEEEECSCGGGH
T ss_pred             CCCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH----HHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhH
Confidence            3567899999999999999988865    345654 6787642    2234554 367888762 268999999999876


Q ss_pred             HHHHhhccccccCCcc-EEEE
Q 044593          102 QSVLKSIPFQRLKRST-LFVD  121 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~-iVvd  121 (335)
                      .++....    ++.|. ++++
T Consensus        79 ~~~~~~a----l~aGkhVl~E   95 (294)
T 1lc0_A           79 EDYIRQF----LQAGKHVLVE   95 (294)
T ss_dssp             HHHHHHH----HHTTCEEEEE
T ss_pred             HHHHHHH----HHCCCcEEEe
Confidence            6665543    22343 5665

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.66  E-value=4.6e-05  Score=73.48  Aligned_cols=89  Identities=19%  Similarity=0.286  Sum_probs=59.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC---CeEEEEcCCCCcHHH-HHhC------CCce-------ecChhhHhhcC--CCE
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH---HTLLVHSRSDHSPAV-RQQL------NAPF-------FADLNDLCELH--PDV   91 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G---~~V~~~dr~~~~~~~-a~~~------g~~~-------~~~~~~~~~~~--aDv   91 (335)
                      |+||+|||+|.+|..++..|.+.|   .+|+++||+++..+. +.+.      .+..       ..+..+++ ++  +|+
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l-~~~~~Dv   79 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALI-NEVKPQI   79 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHH-HHHCCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHH-HhhCCCE
Confidence            469999999999999999999988   389999999865432 2221      1211       12233444 44  899


Q ss_pred             EEEecCchhHHHHHhhccccccCCccEEEEcCC
Q 044593           92 VLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        92 VIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ||.|+|+.....+++..    +..+..++|+++
T Consensus        80 Vin~ag~~~~~~v~~a~----l~~g~~vvD~a~  108 (405)
T 4ina_A           80 VLNIALPYQDLTIMEAC----LRTGVPYLDTAN  108 (405)
T ss_dssp             EEECSCGGGHHHHHHHH----HHHTCCEEESSC
T ss_pred             EEECCCcccChHHHHHH----HHhCCCEEEecC
Confidence            99999987655554432    334556666644

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.66  E-value=9.5e-05  Score=68.86  Aligned_cols=88  Identities=20%  Similarity=0.217  Sum_probs=59.2

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHhC--C-----Cce---ecChhhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARHH--HTLLVHSRSDHSPAVRQQL--N-----APF---FADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~G--~~V~~~dr~~~~~~~a~~~--g-----~~~---~~~~~~~~~~~aDvVIlavp~   98 (335)
                      |||+|||+ |.+|..++..|...|  .+|+++|+++ ....+.++  .     +..   +++..+++ +++|+||++...
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~-~~aDvVvi~ag~   78 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETRATVKGYLGPEQLPDCL-KGCDVVVIPAGV   78 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-HHHHHHHHTTSSSSCEEEEEESGGGHHHHH-TTCSEEEECCSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-cHHHHHHHhccCcCceEEEecCCCCHHHHh-CCCCEEEECCCc
Confidence            69999998 999999999999888  6899999997 22222221  1     112   13566666 899999998743


Q ss_pred             h----------------hHHHHHhhccccccCCccEEEEcC
Q 044593           99 L----------------STQSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus        99 ~----------------~~~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      .                .+.++.+.+. . ..++.+|+.++
T Consensus        79 ~~~~g~~r~dl~~~n~~i~~~i~~~i~-~-~~p~a~viv~s  117 (314)
T 1mld_A           79 PRKPGMTRDDLFNTNATIVATLTAACA-Q-HCPDAMICIIS  117 (314)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHH-H-HCTTSEEEECS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHH-h-hCCCeEEEEEC
Confidence            2                1344555553 2 34666766664

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=97.66  E-value=0.00015  Score=66.08  Aligned_cols=77  Identities=19%  Similarity=0.277  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcccHH-HHHHHHHHHHc--CCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           28 KSTSLKIAVIGFGNF-GQFLAKAFARH--HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        28 ~~~~~kI~IIG~G~m-G~siA~~L~~~--G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      ...++++.|||.|.| |..+|..|...  |..|+++++..              .++.+.+ .++|+||.|++....   
T Consensus       155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~-~~ADIVI~Avg~p~~---  216 (281)
T 2c2x_A          155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALT-RQADIVVAAVGVAHL---  216 (281)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHH-TTCSEEEECSCCTTC---
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHH-hhCCEEEECCCCCcc---
Confidence            346789999999975 99999999999  88999997665              3445566 799999999986542   


Q ss_pred             HhhccccccCCccEEEEcCCC
Q 044593          105 LKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~Sv  125 (335)
                         +....+++|++|+|++.-
T Consensus       217 ---I~~~~vk~GavVIDVgi~  234 (281)
T 2c2x_A          217 ---LTADMVRPGAAVIDVGVS  234 (281)
T ss_dssp             ---BCGGGSCTTCEEEECCEE
T ss_pred             ---cCHHHcCCCcEEEEccCC
Confidence               223457899999999854

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.66  E-value=0.00012  Score=67.43  Aligned_cols=76  Identities=13%  Similarity=0.201  Sum_probs=60.3

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeE-EEEcCCCCcHHHHHhCCCceecChhhHhhc--CCCEEEEecCchhHHHHH
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp~~~~~~vl  105 (335)
                      +.+||+|+|+ |.||..+++.+.+.|+++ ..+++.....   .-.|+..+.++.++. +  .+|++|+++|+....+++
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~---~i~G~~vy~sl~el~-~~~~~Dv~Ii~vp~~~~~~~~   81 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM---EVLGVPVYDTVKEAV-AHHEVDASIIFVPAPAAADAA   81 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---EETTEEEESSHHHHH-HHSCCSEEEECCCHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc---eECCEEeeCCHHHHh-hcCCCCEEEEecCHHHHHHHH
Confidence            4679999997 999999999999999984 3455543101   135777888888886 6  899999999999999988


Q ss_pred             hhcc
Q 044593          106 KSIP  109 (335)
Q Consensus       106 ~~l~  109 (335)
                      ++..
T Consensus        82 ~ea~   85 (288)
T 1oi7_A           82 LEAA   85 (288)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.65  E-value=7.1e-05  Score=67.63  Aligned_cols=66  Identities=17%  Similarity=0.114  Sum_probs=51.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecChhhHhhcCCCEEEEecCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~~~~~~~~aDvVIlavp~   98 (335)
                      ++|||.|+|+|.+|+.++..|.+.|++|++++|++.........++..    ..+++  . .++|+||.+...
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~-~~~d~vi~~a~~   73 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--L-DGVTHLLISTAP   73 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--C-TTCCEEEECCCC
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--c-CCCCEEEECCCc
Confidence            468999999999999999999999999999999987665555556542    12333  4 789999998754

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=97.62  E-value=8.6e-05  Score=70.01  Aligned_cols=68  Identities=21%  Similarity=0.244  Sum_probs=51.0

Q ss_pred             CCCCCeEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHH---h-----CCCceecChhhHhhcCCCEEEEe
Q 044593           28 KSTSLKIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQ---Q-----LNAPFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        28 ~~~~~kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~---~-----~g~~~~~~~~~~~~~~aDvVIla   95 (335)
                      -+.++||+|||+ |.+|+.+|..+...|.  +|+++|++++..+ .+.   .     ..+..+++..+.+ ++||+||++
T Consensus         5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al-~dADvVvit   83 (343)
T 3fi9_A            5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEAL-TDAKYIVSS   83 (343)
T ss_dssp             CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHH-TTEEEEEEC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHh-CCCCEEEEc
Confidence            457789999997 9999999999999884  8999999875432 111   1     1223445666666 899999998


Q ss_pred             c
Q 044593           96 T   96 (335)
Q Consensus        96 v   96 (335)
                      .
T Consensus        84 a   84 (343)
T 3fi9_A           84 G   84 (343)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.62  E-value=0.00013  Score=67.02  Aligned_cols=83  Identities=19%  Similarity=0.177  Sum_probs=57.5

Q ss_pred             cccCCCCCeEEEEc-ccHHHHHHHHHHHHc-CCeEE-EEcCCCCc---HHHH-----HhCCCceecChhhHhhcCCCEEE
Q 044593           25 QYVKSTSLKIAVIG-FGNFGQFLAKAFARH-HHTLL-VHSRSDHS---PAVR-----QQLNAPFFADLNDLCELHPDVVL   93 (335)
Q Consensus        25 ~~~~~~~~kI~IIG-~G~mG~siA~~L~~~-G~~V~-~~dr~~~~---~~~a-----~~~g~~~~~~~~~~~~~~aDvVI   93 (335)
                      |+..++++||+|+| +|.||..+++.+.+. +++++ ++|+++..   .+..     ...|+..+.++++++ .++|+||
T Consensus        15 ~~~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll-~~aDVvI   93 (288)
T 3ijp_A           15 QTQGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAF-SNTEGIL   93 (288)
T ss_dssp             ------CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHT-TSCSEEE
T ss_pred             hhhccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHh-cCCCEEE
Confidence            44445668999999 899999999998764 67765 55887532   1111     134667788999987 7999999


Q ss_pred             EecCchhHHHHHhhc
Q 044593           94 LSTSILSTQSVLKSI  108 (335)
Q Consensus        94 lavp~~~~~~vl~~l  108 (335)
                      -++++....+.+...
T Consensus        94 DFT~p~a~~~~~~~~  108 (288)
T 3ijp_A           94 DFSQPQASVLYANYA  108 (288)
T ss_dssp             ECSCHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHH
Confidence            999888776666554

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.60  E-value=0.00011  Score=69.06  Aligned_cols=90  Identities=20%  Similarity=0.265  Sum_probs=61.4

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHc-CCeEEEEcCCC---C---cHHHHH--hCC---Cceec--ChhhHhhcCCCEEEEe
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARH-HHTLLVHSRSD---H---SPAVRQ--QLN---APFFA--DLNDLCELHPDVVLLS   95 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~-G~~V~~~dr~~---~---~~~~a~--~~g---~~~~~--~~~~~~~~~aDvVIla   95 (335)
                      |+||+|+| .|.+|..+.+.|.+. .+++..+..+.   .   .....-  -.|   .....  +..++. .++|+||+|
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~-~~~Dvvf~a   82 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFS-PGVDVVFLA   82 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTC-TTCSEEEEC
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHh-cCCCEEEEC
Confidence            47999999 699999999999884 45776553222   1   121110  012   22222  445554 689999999


Q ss_pred             cCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           96 TSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        96 vp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      +|.....++...+    ++.|+.|+|+++-
T Consensus        83 ~p~~~s~~~~~~~----~~~g~~vIDlSa~  108 (337)
T 3dr3_A           83 TAHEVSHDLAPQF----LEAGCVVFDLSGA  108 (337)
T ss_dssp             SCHHHHHHHHHHH----HHTTCEEEECSST
T ss_pred             CChHHHHHHHHHH----HHCCCEEEEcCCc
Confidence            9998888877765    3578899999875

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.59  E-value=0.00024  Score=64.93  Aligned_cols=76  Identities=21%  Similarity=0.244  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcccH-HHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGN-FGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~-mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..++++.|||.|. +|..+|..|...|..|+++.+...              ++.+.+ .++|+||.+++....      
T Consensus       159 l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~--------------~L~~~~-~~ADIVI~Avg~p~~------  217 (286)
T 4a5o_A          159 LYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTR--------------DLADHV-SRADLVVVAAGKPGL------  217 (286)
T ss_dssp             CTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCS--------------CHHHHH-HTCSEEEECCCCTTC------
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCc--------------CHHHHh-ccCCEEEECCCCCCC------
Confidence            4678999999865 899999999999999999976432              445666 799999999985432      


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                      +....+++|++|+|++..
T Consensus       218 I~~~~vk~GavVIDvgi~  235 (286)
T 4a5o_A          218 VKGEWIKEGAIVIDVGIN  235 (286)
T ss_dssp             BCGGGSCTTCEEEECCSC
T ss_pred             CCHHHcCCCeEEEEeccc
Confidence            223568999999999864

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.58  E-value=0.00016  Score=68.47  Aligned_cols=90  Identities=18%  Similarity=0.160  Sum_probs=60.0

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcC-CeEEEEcCC--CC--cHHHHHhC-----------CCce-ecChhhHhhc-CCCE
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHH-HTLLVHSRS--DH--SPAVRQQL-----------NAPF-FADLNDLCEL-HPDV   91 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G-~~V~~~dr~--~~--~~~~a~~~-----------g~~~-~~~~~~~~~~-~aDv   91 (335)
                      ++||+|+| .|.+|..+++.|.+.+ ++|+.+.++  ..  ........           .+.. ..+++++. + ++|+
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dv   86 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEE-FEDVDI   86 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGG-GTTCCE
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHh-cCCCCE
Confidence            46999999 8999999999998765 477666322  21  12111000           1111 12445554 5 8999


Q ss_pred             EEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           92 VLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        92 VIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ||+|+|.....+....+    ++.|..|+|.++.
T Consensus        87 V~~atp~~~~~~~a~~~----~~aG~~VId~s~~  116 (354)
T 1ys4_A           87 VFSALPSDLAKKFEPEF----AKEGKLIFSNASA  116 (354)
T ss_dssp             EEECCCHHHHHHHHHHH----HHTTCEEEECCST
T ss_pred             EEECCCchHHHHHHHHH----HHCCCEEEECCch
Confidence            99999998877777665    3467889999875

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=97.57  E-value=3.6e-05  Score=72.13  Aligned_cols=77  Identities=17%  Similarity=0.283  Sum_probs=56.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEE-EEcCCC-CcHH----HHHhCCC--ceecChhhHhh-cCCCEEEEecCchhH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLL-VHSRSD-HSPA----VRQQLNA--PFFADLNDLCE-LHPDVVLLSTSILST  101 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~-~~dr~~-~~~~----~a~~~g~--~~~~~~~~~~~-~~aDvVIlavp~~~~  101 (335)
                      ++||+|||+|.+|...+..+ ..+.+|+ ++|+++ +..+    .+.+.|+  ..++|.++++. .+.|+|++|||...-
T Consensus         2 ~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H   80 (337)
T 3ip3_A            2 SLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLN   80 (337)
T ss_dssp             CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHH
T ss_pred             ceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchH
Confidence            57999999999999888877 5567765 679887 3332    2233465  46788888872 369999999999876


Q ss_pred             HHHHhhc
Q 044593          102 QSVLKSI  108 (335)
Q Consensus       102 ~~vl~~l  108 (335)
                      .++....
T Consensus        81 ~~~~~~a   87 (337)
T 3ip3_A           81 GKILLEA   87 (337)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.56  E-value=0.00021  Score=62.86  Aligned_cols=71  Identities=14%  Similarity=0.280  Sum_probs=53.0

Q ss_pred             cCCCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCC-cee-----cChhhHhhcCCCEEEEecCc
Q 044593           27 VKSTSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNA-PFF-----ADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        27 ~~~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~-~~~-----~~~~~~~~~~aDvVIlavp~   98 (335)
                      ...++|+|.|.|. |.+|..+++.|.+.|++|++++|+++..+.....++ ...     .+..+.+ .++|+||.+...
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~D~vi~~ag~   94 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAF-ASIDAVVFAAGS   94 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGG-TTCSEEEECCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHH-cCCCEEEECCCC
Confidence            4457899999995 999999999999999999999999877655555565 321     2334455 789999988764

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.55  E-value=0.00013  Score=66.72  Aligned_cols=79  Identities=19%  Similarity=0.139  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHH-cCCeEE-EEcCCCCcH---HHH-----HhCCCceecChhhHhhcCCCEEEEecC
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFAR-HHHTLL-VHSRSDHSP---AVR-----QQLNAPFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~-~G~~V~-~~dr~~~~~---~~a-----~~~g~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      ++.|||+|+|+ |.||..++..+.+ .|++++ ++|++++..   +..     ...++..++++++++ .++|+||-+++
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l-~~~DvVIDft~   81 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVK-DDFDVFIDFTR   81 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTT-TSCSEEEECSC
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHh-cCCCEEEEcCC
Confidence            45689999998 9999999998875 577875 778876421   111     112444566777777 68999997777


Q ss_pred             chhHHHHHhhc
Q 044593           98 ILSTQSVLKSI  108 (335)
Q Consensus        98 ~~~~~~vl~~l  108 (335)
                      +....+.+...
T Consensus        82 p~~~~~~~~~a   92 (273)
T 1dih_A           82 PEGTLNHLAFC   92 (273)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            77666666554

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.55  E-value=4.4e-05  Score=70.09  Aligned_cols=95  Identities=15%  Similarity=0.254  Sum_probs=63.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhCCC--------c-eecChhhHhhcCCCEEEEecCc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQLNA--------P-FFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~g~--------~-~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      ...+++.|+|.|.||.+++..|.+.| +|++++|+.+..+ .+.+.+.        . ...+..+.. .++|+||.|+|.
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~-~~~DilVn~ag~  203 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDL-DGVDIIINATPI  203 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCC-TTCCEEEECSCT
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhh-CCCCEEEECCCC
Confidence            35679999999999999999999999 9999999875432 2222110        0 112223334 689999999997


Q ss_pred             hhHHHHH-hhc-cccccCCccEEEEcCCC
Q 044593           99 LSTQSVL-KSI-PFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        99 ~~~~~vl-~~l-~~~~l~~~~iVvd~~Sv  125 (335)
                      ......- ..+ ....++++.+|+|+...
T Consensus       204 ~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~  232 (287)
T 1nvt_A          204 GMYPNIDVEPIVKAEKLREDMVVMDLIYN  232 (287)
T ss_dssp             TCTTCCSSCCSSCSTTCCSSSEEEECCCS
T ss_pred             CCCCCCCCCCCCCHHHcCCCCEEEEeeeC
Confidence            6532100 001 12357789999999753

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.52  E-value=5.2e-05  Score=66.98  Aligned_cols=71  Identities=11%  Similarity=0.133  Sum_probs=49.9

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecCch
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHH-HTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp~~   99 (335)
                      +.+++|.|.| .|.+|..++..|.+.| ++|++++|+++........++..    .++   ..+++ +++|+||.+....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~D~vv~~a~~~   99 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAM-QGQDIVYANLTGE   99 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHH-TTCSEEEEECCST
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHh-cCCCEEEEcCCCC
Confidence            4567899999 6999999999999999 89999999976443221222221    122   33445 7899999887654


Q ss_pred             h
Q 044593          100 S  100 (335)
Q Consensus       100 ~  100 (335)
                      .
T Consensus       100 ~  100 (236)
T 3qvo_A          100 D  100 (236)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.50  E-value=0.00014  Score=68.74  Aligned_cols=91  Identities=14%  Similarity=0.107  Sum_probs=60.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcC-----C-eEEEEc-CC-C-CcHHHH----Hh-CCCcee-cChhhHhhcCCCEE
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHH-----H-TLLVHS-RS-D-HSPAVR----QQ-LNAPFF-ADLNDLCELHPDVV   92 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G-----~-~V~~~d-r~-~-~~~~~a----~~-~g~~~~-~~~~~~~~~~aDvV   92 (335)
                      |+++||+|+| .|.+|..+.+.|.+.+     . +++.+. ++ . +.....    .. ..+... .+.++ . .++|+|
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~DvV   84 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAV-L-GGHDAV   84 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHH-H-TTCSEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHH-h-cCCCEE
Confidence            3467999999 8999999999999877     3 666553 32 2 112110    00 112211 23333 3 589999


Q ss_pred             EEecCchhHHHHHhhccccccCCccEEEEcCCCC
Q 044593           93 LLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus        93 Ilavp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK  126 (335)
                      |+|+|.....++...+     +.|..|+|+++--
T Consensus        85 f~alg~~~s~~~~~~~-----~~G~~vIDlSa~~  113 (352)
T 2nqt_A           85 FLALPHGHSAVLAQQL-----SPETLIIDCGADF  113 (352)
T ss_dssp             EECCTTSCCHHHHHHS-----CTTSEEEECSSTT
T ss_pred             EECCCCcchHHHHHHH-----hCCCEEEEECCCc
Confidence            9999998877777655     3578999998764

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.49  E-value=0.0003  Score=66.71  Aligned_cols=90  Identities=16%  Similarity=0.225  Sum_probs=59.5

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCC-eEEEE-cCCCCcHHHHHh----CCC---c-eecChhhHhhcCCCEEEEecC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHH-TLLVH-SRSDHSPAVRQQ----LNA---P-FFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~-dr~~~~~~~a~~----~g~---~-~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |+.+||+|+| .|.+|..+.+.|.+... +++.+ ++.....+....    .+.   . ...+ ++.. .++|+||+|+|
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~-~~vDvVf~atp   91 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADF-STVDAVFCCLP   91 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCG-GGCSEEEECCC
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHh-cCCCEEEEcCC
Confidence            4557999999 89999999999988754 77665 433222221211    121   0 0111 3333 57999999999


Q ss_pred             chhHHHHHhhccccccCCccEEEEcCCC
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .....+....+     +.|..|+|.++-
T Consensus        92 ~~~s~~~a~~~-----~aG~~VId~sa~  114 (359)
T 1xyg_A           92 HGTTQEIIKEL-----PTALKIVDLSAD  114 (359)
T ss_dssp             TTTHHHHHHTS-----CTTCEEEECSST
T ss_pred             chhHHHHHHHH-----hCCCEEEECCcc
Confidence            98877766544     467899999874

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.49  E-value=3e-05  Score=68.21  Aligned_cols=80  Identities=13%  Similarity=0.098  Sum_probs=54.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHH--HHcCCeEE-EEcCCCCcHHH-HHhCCCceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAF--ARHHHTLL-VHSRSDHSPAV-RQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L--~~~G~~V~-~~dr~~~~~~~-a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ....++|+|||+|.+|..+++.+  .. |++++ ++|.+++.... +....+...+++.+++.++.|+|++|+|.....+
T Consensus        77 ~~~~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~~~~e  155 (211)
T 2dt5_A           77 LNRKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQK  155 (211)
T ss_dssp             TTSCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHHHHHH
T ss_pred             cCCCCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCchhHHH
Confidence            34567999999999999999863  33 77765 56888765431 1111222345667766226999999999887666


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      +...+
T Consensus       156 i~~~l  160 (211)
T 2dt5_A          156 AADLL  160 (211)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66655

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.48  E-value=0.00034  Score=64.88  Aligned_cols=77  Identities=13%  Similarity=0.189  Sum_probs=59.7

Q ss_pred             CCCeEEEE-cc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhc--CCCEEEEecCchhHHHHH
Q 044593           30 TSLKIAVI-GF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        30 ~~~kI~II-G~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp~~~~~~vl  105 (335)
                      ...+++|| |+ |.+|..+++.|.+.|++ .+++.||.... ..-.|+..+.++.++. +  .+|++++++|+....+++
T Consensus        12 ~~~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g-~~i~G~~vy~sl~el~-~~~~vD~avI~vP~~~~~~~~   88 (305)
T 2fp4_A           12 DKNTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGG-KTHLGLPVFNTVKEAK-EQTGATASVIYVPPPFAAAAI   88 (305)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT-CEETTEEEESSHHHHH-HHHCCCEEEECCCHHHHHHHH
T ss_pred             CCCcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCc-ceECCeeeechHHHhh-hcCCCCEEEEecCHHHHHHHH
Confidence            35678888 97 99999999999999998 33454543210 0125778888888886 6  899999999999999988


Q ss_pred             hhcc
Q 044593          106 KSIP  109 (335)
Q Consensus       106 ~~l~  109 (335)
                      +++.
T Consensus        89 ~e~i   92 (305)
T 2fp4_A           89 NEAI   92 (305)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.46  E-value=5.4e-05  Score=66.51  Aligned_cols=82  Identities=15%  Similarity=0.219  Sum_probs=57.0

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHH--HHcCCeEE-EEcCCCC-cHHHHHhCCCce--ecChhhHhh-cCCCEEEEecCch
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAF--ARHHHTLL-VHSRSDH-SPAVRQQLNAPF--FADLNDLCE-LHPDVVLLSTSIL   99 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L--~~~G~~V~-~~dr~~~-~~~~a~~~g~~~--~~~~~~~~~-~~aDvVIlavp~~   99 (335)
                      ...+..+|+|||+|.+|..++..+  .+.|++++ ++|.|++ ....+.-.|+.+  .+++.+++. .+.|.+|+|+|..
T Consensus        80 g~~~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~  159 (212)
T 3keo_A           80 NDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST  159 (212)
T ss_dssp             TTTSCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred             CCCCCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence            334567999999999999999984  44577765 5698887 543201235543  345555551 3699999999998


Q ss_pred             hHHHHHhhc
Q 044593          100 STQSVLKSI  108 (335)
Q Consensus       100 ~~~~vl~~l  108 (335)
                      ...++.+.+
T Consensus       160 ~aq~v~d~l  168 (212)
T 3keo_A          160 EAQEVADIL  168 (212)
T ss_dssp             GHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            877777665

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.43  E-value=0.00026  Score=66.74  Aligned_cols=90  Identities=11%  Similarity=0.065  Sum_probs=59.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCC-eEEEEcCCC-CcHHHHHh----CCC--ceecChhhHhhcCCCEEEEecCchh
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHH-TLLVHSRSD-HSPAVRQQ----LNA--PFFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~dr~~-~~~~~a~~----~g~--~~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      +++||+|+| .|.+|..+.+.|.+... +++.+.... ...+....    .|.  ....+.++ . .++|+||+|+|...
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~-~~vDvV~~a~g~~~   80 (345)
T 2ozp_A            3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-L-EPADILVLALPHGV   80 (345)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-C-CCCSEEEECCCTTH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-h-cCCCEEEEcCCcHH
Confidence            357999999 79999999999987654 766554332 21111110    111  11122333 3 68999999999988


Q ss_pred             HHHHHhhccccccCCccEEEEcCCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ..++...+    ++.|..|+|+++-
T Consensus        81 s~~~a~~~----~~aG~~VId~Sa~  101 (345)
T 2ozp_A           81 FAREFDRY----SALAPVLVDLSAD  101 (345)
T ss_dssp             HHHTHHHH----HTTCSEEEECSST
T ss_pred             HHHHHHHH----HHCCCEEEEcCcc
Confidence            77766654    4567889999874

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=97.43  E-value=0.0007  Score=63.75  Aligned_cols=91  Identities=13%  Similarity=0.127  Sum_probs=57.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc-CCeEEE-EcCCCCcHH-HHHhC--------------------CCceecChhhHhhc
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH-HHTLLV-HSRSDHSPA-VRQQL--------------------NAPFFADLNDLCEL   87 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~-G~~V~~-~dr~~~~~~-~a~~~--------------------g~~~~~~~~~~~~~   87 (335)
                      ++||+|+|+|.||..+++.|.+. +++|++ .|++++... .++..                    ++....+..++. .
T Consensus         2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~-~   80 (343)
T 2yyy_A            2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDII-E   80 (343)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTG-G
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhc-c
Confidence            36999999999999999999876 467654 466544332 12221                    222222333444 5


Q ss_pred             CCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           88 HPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        88 ~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ++|+|+.|+|.....+....   .+++.|+.|++.++.
T Consensus        81 ~vDiV~eatg~~~s~~~a~~---~~l~aG~~VI~sap~  115 (343)
T 2yyy_A           81 DADIVVDGAPKKIGKQNLEN---IYKPHKVKAILQGGE  115 (343)
T ss_dssp             GCSEEEECCCTTHHHHHHHH---TTTTTTCEEEECTTS
T ss_pred             CCCEEEECCCccccHHHHHH---HHHHCCCEEEECCCc
Confidence            89999999998875555541   234566667765443

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.42  E-value=0.00032  Score=66.35  Aligned_cols=90  Identities=21%  Similarity=0.179  Sum_probs=62.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~  107 (335)
                      ..+++|+|+|+|++|..+|+.+...|.+|+++|+++...+.+.+.|.... +.+++...+||+++-|--... ..+.++.
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~~  251 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVART  251 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHhh
Confidence            46789999999999999999999999999999998654445566676544 445655138999986532222 2233333


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                      +     + ..+|++.+..
T Consensus       252 l-----k-~~iVie~AN~  263 (355)
T 1c1d_A          252 L-----D-CSVVAGAANN  263 (355)
T ss_dssp             C-----C-CSEECCSCTT
T ss_pred             C-----C-CCEEEECCCC
Confidence            3     2 3577776654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.38  E-value=0.00024  Score=63.82  Aligned_cols=35  Identities=14%  Similarity=0.277  Sum_probs=32.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      ...+|.|||+|.+|+.++..|...|. +|+++|++.
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            35799999999999999999999997 899999986

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=97.38  E-value=0.00025  Score=68.96  Aligned_cols=72  Identities=18%  Similarity=0.208  Sum_probs=53.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHc-CCeE-EEEcCCCCcHHHH-HhC-C----------------------CceecCh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARH-HHTL-LVHSRSDHSPAVR-QQL-N----------------------APFFADL   81 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~-G~~V-~~~dr~~~~~~~a-~~~-g----------------------~~~~~~~   81 (335)
                      .++..||||||+|.||..++..+.+. +.+| .++|++++..+.+ .+. |                      ...++|.
T Consensus        20 ~~k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~   99 (446)
T 3upl_A           20 TGKPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDN   99 (446)
T ss_dssp             TTCCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCH
T ss_pred             cCCceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCH
Confidence            45678999999999999999988764 5565 5779998765433 222 4                      2356788


Q ss_pred             hhHhh-cCCCEEEEecCch
Q 044593           82 NDLCE-LHPDVVLLSTSIL   99 (335)
Q Consensus        82 ~~~~~-~~aDvVIlavp~~   99 (335)
                      ++++. .+.|+|++|||..
T Consensus       100 eeLL~d~dIDaVviaTp~p  118 (446)
T 3upl_A          100 DLILSNPLIDVIIDATGIP  118 (446)
T ss_dssp             HHHHTCTTCCEEEECSCCH
T ss_pred             HHHhcCCCCCEEEEcCCCh
Confidence            88762 2589999999864

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.37  E-value=0.00096  Score=61.66  Aligned_cols=65  Identities=15%  Similarity=0.169  Sum_probs=45.1

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCC--eEEEEcC--CCCcHHH-HHh--------CCCceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHH--TLLVHSR--SDHSPAV-RQQ--------LNAPFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~--~V~~~dr--~~~~~~~-a~~--------~g~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |||+|+| +|.+|.+++..|...|+  ++.++|+  +++..+. +.+        ..+....+..+.+ +++|+||++..
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~-~~aDvVi~~ag   79 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDT-AGSDVVVITAG   79 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGG-TTCSEEEECCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHh-CCCCEEEEcCC
Confidence            6999999 99999999999998886  7899999  6543211 111        1122221224445 79999999875

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.36  E-value=0.00048  Score=63.49  Aligned_cols=77  Identities=13%  Similarity=0.181  Sum_probs=59.6

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhc--CCCEEEEecCchhHHHHHh
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp~~~~~~vl~  106 (335)
                      ...+|+|+|+ |.||..+++.+.+.|++ .+++.++.... ..-.|+..+.++.++. +  .+|++|++||+....+++.
T Consensus        12 ~~~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g-~~i~G~~vy~sl~el~-~~~~~Dv~ii~vp~~~~~~~v~   88 (294)
T 2yv1_A           12 ENTKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGG-QNVHGVPVFDTVKEAV-KETDANASVIFVPAPFAKDAVF   88 (294)
T ss_dssp             TTCCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTT-CEETTEEEESSHHHHH-HHHCCCEEEECCCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCC-ceECCEeeeCCHHHHh-hcCCCCEEEEccCHHHHHHHHH
Confidence            3457889997 99999999999999998 44444554210 0125778888888886 6  8999999999999998888


Q ss_pred             hcc
Q 044593          107 SIP  109 (335)
Q Consensus       107 ~l~  109 (335)
                      +..
T Consensus        89 ea~   91 (294)
T 2yv1_A           89 EAI   91 (294)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.35  E-value=0.00092  Score=57.54  Aligned_cols=65  Identities=18%  Similarity=0.202  Sum_probs=48.5

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-ecCh----hhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-FADL----NDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-~~~~----~~~~~~~aDvVIlavp~   98 (335)
                      |||.|+| .|.+|..++..|.+.|++|++++|+++...... .++.. ..|.    .+.+ .++|+||.+...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~-~~~d~vi~~ag~   71 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDL-SDQNVVVDAYGI   71 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHH-TTCSEEEECCCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhh-cCCCEEEECCcC
Confidence            6899999 599999999999999999999999986554322 34432 1111    1344 789999998754

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.34  E-value=0.00033  Score=63.09  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=59.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      ..|||+++|+|.||..+++.  . ++++ .+|+  ++..    +.|+..++|.++++ .++|+|+-|.+...+.+....+
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~--~k~g----elgv~a~~d~d~ll-a~pD~VVe~A~~~av~e~~~~i   80 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD--RISK----DIPGVVRLDEFQVP-SDVSTVVECASPEAVKEYSLQI   80 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC--SSCC----CCSSSEECSSCCCC-TTCCEEEECSCHHHHHHHHHHH
T ss_pred             ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe--cccc----ccCceeeCCHHHHh-hCCCEEEECCCHHHHHHHHHHH
Confidence            46999999999999999998  4 7876 5667  2211    22777778888888 6999999999888777755544


Q ss_pred             cccccCCccEEEEcC
Q 044593          109 PFQRLKRSTLFVDVL  123 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~  123 (335)
                          ++.|.-|+-++
T Consensus        81 ----L~aG~dvv~~S   91 (253)
T 1j5p_A           81 ----LKNPVNYIIIS   91 (253)
T ss_dssp             ----TTSSSEEEECC
T ss_pred             ----HHCCCCEEEcC
Confidence                45666665554

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=97.33  E-value=0.00046  Score=64.84  Aligned_cols=90  Identities=18%  Similarity=0.207  Sum_probs=58.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc-CCeEEEE-cC--CCCcHHHHHhC----C----C---------------cee--cCh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH-HHTLLVH-SR--SDHSPAVRQQL----N----A---------------PFF--ADL   81 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~-G~~V~~~-dr--~~~~~~~a~~~----g----~---------------~~~--~~~   81 (335)
                      ++||+|+|+|.||..+++.+.+. +.+|+++ |+  +++......+.    |    .               ...  .++
T Consensus         3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~   82 (335)
T 1u8f_O            3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP   82 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence            46999999999999999998775 4677544 54  33332222221    1    0               011  244


Q ss_pred             hhHhh--cCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCC
Q 044593           82 NDLCE--LHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        82 ~~~~~--~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +++.+  .++|+||.|+|.....+.....    ++.|..++|++.
T Consensus        83 ~~l~~~~~~vDvV~eatg~~~~~e~a~~~----l~aGak~V~iSa  123 (335)
T 1u8f_O           83 SKIKWGDAGAEYVVESTGVFTTMEKAGAH----LQGGAKRVIISA  123 (335)
T ss_dssp             GGCCTTTTTCCEEEECSSSCCSHHHHGGG----GGGTCSEEEESS
T ss_pred             HHCccccCCCCEEEECCCchhhHHHHHHH----HhCCCeEEEecc
Confidence            44411  3799999999998877776554    556777777764

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.32  E-value=0.0013  Score=61.20  Aligned_cols=90  Identities=20%  Similarity=0.276  Sum_probs=57.3

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHc-C--CeEEEEcCCCCcHHHHHh---CCC--cee----cChhhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARH-H--HTLLVHSRSDHSPAVRQQ---LNA--PFF----ADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~-G--~~V~~~dr~~~~~~~a~~---~g~--~~~----~~~~~~~~~~aDvVIlavp~   98 (335)
                      |||+||| +|.+|.+++..|... +  .++.++|+++...-.+.+   ...  ...    ++..+.+ +++|+||++.+.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~-~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPAL-EGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHH-TTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHh-CCCCEEEEeCCC
Confidence            7999999 899999999999876 5  389999998732211221   111  121    1334445 899999998743


Q ss_pred             hh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           99 LS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..                +.++.+.+. . ..++.+|+.+++
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~-~-~~p~a~vlvvtN  119 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVA-K-TCPKACIGIITN  119 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHH-H-HCTTSEEEECSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHH-H-HCCCcEEEEecC
Confidence            21                233334442 2 356777777754

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.32  E-value=0.0006  Score=63.60  Aligned_cols=66  Identities=18%  Similarity=0.133  Sum_probs=49.7

Q ss_pred             CCeEEEEcccHHHHH-HHHHHHHcCCeEEEEcCCCC--cHHHHHhCCCcee--cChhhHhhcCCCEEEEec
Q 044593           31 SLKIAVIGFGNFGQF-LAKAFARHHHTLLVHSRSDH--SPAVRQQLNAPFF--ADLNDLCELHPDVVLLST   96 (335)
Q Consensus        31 ~~kI~IIG~G~mG~s-iA~~L~~~G~~V~~~dr~~~--~~~~a~~~g~~~~--~~~~~~~~~~aDvVIlav   96 (335)
                      ++||.|||.|.+|.+ +|+.|.+.|++|+++|.++.  ..+...+.|+...  .+.+.+...++|+||++.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Sp   74 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGN   74 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECT
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECC
Confidence            579999999999996 99999999999999998763  3445666788654  233333102699999853

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=97.32  E-value=0.0004  Score=66.31  Aligned_cols=94  Identities=17%  Similarity=0.116  Sum_probs=59.8

Q ss_pred             ccCCCCCeEEEEc-ccHHHHHHHHHHHHcCC-eEE-EE-cCC-C-CcHHHH-------------HhCCCceecChhhHhh
Q 044593           26 YVKSTSLKIAVIG-FGNFGQFLAKAFARHHH-TLL-VH-SRS-D-HSPAVR-------------QQLNAPFFADLNDLCE   86 (335)
Q Consensus        26 ~~~~~~~kI~IIG-~G~mG~siA~~L~~~G~-~V~-~~-dr~-~-~~~~~a-------------~~~g~~~~~~~~~~~~   86 (335)
                      ...|+++||+||| .|..|.-+.+.|.+..+ ++. ++ +++ . +.....             .+.-+... +..+.. 
T Consensus        14 ~~~M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~-~~~~~~-   91 (381)
T 3hsk_A           14 GSHMSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQEC-KPEGNF-   91 (381)
T ss_dssp             ----CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEES-SSCTTG-
T ss_pred             cccCCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeC-chhhhc-
Confidence            3456778999999 69999999999887653 664 33 332 2 122211             11111111 222123 


Q ss_pred             cCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           87 LHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        87 ~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .++|+||+|+|.....++...+    ++.|+.|+|+++-
T Consensus        92 ~~~Dvvf~alp~~~s~~~~~~~----~~~G~~VIDlSa~  126 (381)
T 3hsk_A           92 LECDVVFSGLDADVAGDIEKSF----VEAGLAVVSNAKN  126 (381)
T ss_dssp             GGCSEEEECCCHHHHHHHHHHH----HHTTCEEEECCST
T ss_pred             ccCCEEEECCChhHHHHHHHHH----HhCCCEEEEcCCc
Confidence            6899999999999888888766    3478899999875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.31  E-value=0.0012  Score=58.37  Aligned_cols=89  Identities=13%  Similarity=0.107  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-H-HHHHhCCCcee---cChhhHhhcCCCEEEEecCchhHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-P-AVRQQLNAPFF---ADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~-~~a~~~g~~~~---~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      +..+++|.|||.|.+|..-+..|.+.|.+|++++++... . +++.+.++...   -...+ + .++|+||.||......
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~d-L-~~adLVIaAT~d~~~N  105 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEED-L-LNVFFIVVATNDQAVN  105 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGG-S-SSCSEEEECCCCTHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhH-h-CCCCEEEECCCCHHHH
Confidence            457899999999999999999999999999999987642 2 33333344321   12233 3 7899999999888777


Q ss_pred             HHHhhccccccCCccEEEEcC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      ..+....    + ..+.+++.
T Consensus       106 ~~I~~~a----k-~gi~VNvv  121 (223)
T 3dfz_A          106 KFVKQHI----K-NDQLVNMA  121 (223)
T ss_dssp             HHHHHHS----C-TTCEEEC-
T ss_pred             HHHHHHH----h-CCCEEEEe
Confidence            6666553    2 23556654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.31  E-value=0.00075  Score=58.39  Aligned_cols=66  Identities=24%  Similarity=0.263  Sum_probs=49.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-cCh----hhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-ADL----NDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-~~~----~~~~~~~aDvVIlavp~   98 (335)
                      |||.|+|. |.+|..++..|.+.|++|++++|++.........++... .|+    .+.+ .++|+||.+...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADL-DSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHH-TTCSEEEECCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhc-ccCCEEEECCcc
Confidence            68999995 999999999999999999999999765543333444321 111    1344 789999998754

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.29  E-value=0.00051  Score=66.86  Aligned_cols=77  Identities=12%  Similarity=0.163  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHH----------cCCeE-EEEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEec
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFAR----------HHHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~----------~G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlav   96 (335)
                      |+..||+|||+|.||+.++..|.+          .+.+| .++|+++...+.. ..+...+++.++++. .+.|+|+.|+
T Consensus         8 Mk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~~~d~~ell~d~diDvVve~t   86 (444)
T 3mtj_A            8 MKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPLTTNPFDVVDDPEIDIVVELI   86 (444)
T ss_dssp             CSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCEESCTHHHHTCTTCCEEEECC
T ss_pred             hCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcccCCHHHHhcCCCCCEEEEcC
Confidence            456799999999999999988764          23455 4668887544322 235567788888762 3689999999


Q ss_pred             Cc-hhHHHHHh
Q 044593           97 SI-LSTQSVLK  106 (335)
Q Consensus        97 p~-~~~~~vl~  106 (335)
                      |. ....+++.
T Consensus        87 p~~~~h~~~~~   97 (444)
T 3mtj_A           87 GGLEPARELVM   97 (444)
T ss_dssp             CSSTTHHHHHH
T ss_pred             CCchHHHHHHH
Confidence            96 55444443

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.25  E-value=0.00022  Score=64.51  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=46.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-------ecChhhHhhcC-CCEEEEecC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-------FADLNDLCELH-PDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-------~~~~~~~~~~~-aDvVIlavp   97 (335)
                      |++|||.|.|+|.+|+.++..|.+.|++|++++|++....    .++..       ..+..+++ ++ +|+||-+..
T Consensus         1 M~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~Dl~d~~~~~~~~-~~~~d~vih~a~   72 (286)
T 3gpi_A            1 MSLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMP----AGVQTLIADVTRPDTLASIV-HLRPEILVYCVA   72 (286)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCC----TTCCEEECCTTCGGGCTTGG-GGCCSEEEECHH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccc----cCCceEEccCCChHHHHHhh-cCCCCEEEEeCC
Confidence            4578999999999999999999999999999999876421    23321       12223344 44 999998764

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.24  E-value=0.00016  Score=67.98  Aligned_cols=89  Identities=11%  Similarity=0.099  Sum_probs=57.9

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcC---CeEEEE-cCCCC-c-HHHHHhCCCceec-ChhhHhhcCCCEEEEecCchhH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHH---HTLLVH-SRSDH-S-PAVRQQLNAPFFA-DLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G---~~V~~~-dr~~~-~-~~~a~~~g~~~~~-~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      +++||+|+| .|.+|..+.+.|.+.+   ++++.+ +++.. . .. .....+.... +.. .. .++|+||.|+|....
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~-~~~~~i~~~~~~~~-~~-~~vDvVf~a~g~~~s   78 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR-FNGKTVRVQNVEEF-DW-SQVHIALFSAGGELS   78 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE-ETTEEEEEEEGGGC-CG-GGCSEEEECSCHHHH
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee-ecCceeEEecCChH-Hh-cCCCEEEECCCchHH
Confidence            468999999 8999999999998874   356554 33221 1 11 0000111111 122 22 579999999998887


Q ss_pred             HHHHhhccccccCCccEEEEcCCC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .+....+    ++.|..|+|.++-
T Consensus        79 ~~~a~~~----~~~G~~vId~s~~   98 (336)
T 2r00_A           79 AKWAPIA----AEAGVVVIDNTSH   98 (336)
T ss_dssp             HHHHHHH----HHTTCEEEECSST
T ss_pred             HHHHHHH----HHcCCEEEEcCCc
Confidence            7777655    4568899999864

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=97.22  E-value=0.0007  Score=63.97  Aligned_cols=95  Identities=16%  Similarity=0.159  Sum_probs=57.1

Q ss_pred             ccCCCCCeEEEEcccHHHHHHHHHHHHc-CCeEEEE-cCCCCc--HHHHHhC----C-------------------Ccee
Q 044593           26 YVKSTSLKIAVIGFGNFGQFLAKAFARH-HHTLLVH-SRSDHS--PAVRQQL----N-------------------APFF   78 (335)
Q Consensus        26 ~~~~~~~kI~IIG~G~mG~siA~~L~~~-G~~V~~~-dr~~~~--~~~a~~~----g-------------------~~~~   78 (335)
                      .+.+.++||+|+|+|.+|..+.+.|.+. .++|+.+ |+....  .....+.    |                   +..+
T Consensus        12 ~~~~~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~   91 (354)
T 3cps_A           12 ENLYFQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVF   91 (354)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEE
T ss_pred             cCcCcceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEE
Confidence            3455678999999999999999999876 5677655 412221  1111111    0                   0111


Q ss_pred             --cChhhHhh--cCCCEEEEecCchhHHHHHhhccccccCCcc--EEEEcCC
Q 044593           79 --ADLNDLCE--LHPDVVLLSTSILSTQSVLKSIPFQRLKRST--LFVDVLS  124 (335)
Q Consensus        79 --~~~~~~~~--~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~--iVvd~~S  124 (335)
                        .++.++.+  .++|+||.|+|.....+....+    ++.|.  +|+|.++
T Consensus        92 ~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~----l~~GakkvVId~pa  139 (354)
T 3cps_A           92 QAKDPAEIPWGASGAQIVCESTGVFTTEEKASLH----LKGGAKKVIISAPP  139 (354)
T ss_dssp             CCSCGGGCCHHHHTCCEEEECSSSCCSHHHHGGG----GTTTCSEEEESSCC
T ss_pred             ecCChHHCCcccCCCCEEEECCCchhhHHHHHHH----HHcCCcEEEEeCCC
Confidence              14444321  3799999999988877777654    44566  8888865

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.22  E-value=0.00098  Score=61.49  Aligned_cols=77  Identities=13%  Similarity=0.176  Sum_probs=58.6

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhc--C-CCEEEEecCchhHHHHH
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL--H-PDVVLLSTSILSTQSVL  105 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~--~-aDvVIlavp~~~~~~vl  105 (335)
                      ...+|.|+|+ |.||..+++.+.+.|++ .++..++.... ..-.|+..+.++.++. +  . +|++|++||+....+++
T Consensus        12 ~~~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g-~~i~G~~vy~sl~el~-~~~~~~DvaIi~vp~~~~~~~v   88 (297)
T 2yv2_A           12 SETRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGG-SEVHGVPVYDSVKEAL-AEHPEINTSIVFVPAPFAPDAV   88 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT-CEETTEEEESSHHHHH-HHCTTCCEEEECCCGGGHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCC-ceECCEeeeCCHHHHh-hcCCCCCEEEEecCHHHHHHHH
Confidence            3557888897 99999999999999998 33444443210 0125788888888886 4  4 99999999999999998


Q ss_pred             hhcc
Q 044593          106 KSIP  109 (335)
Q Consensus       106 ~~l~  109 (335)
                      ++..
T Consensus        89 ~ea~   92 (297)
T 2yv2_A           89 YEAV   92 (297)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.19  E-value=0.00056  Score=63.99  Aligned_cols=93  Identities=20%  Similarity=0.083  Sum_probs=60.3

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCC----CCcHH-HHH--hCC-------CceecChhhHhhc
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRS----DHSPA-VRQ--QLN-------APFFADLNDLCEL   87 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~----~~~~~-~a~--~~g-------~~~~~~~~~~~~~   87 (335)
                      +.|||+|+|+ |.+|++++..|...|+       +|.++|++    ++..+ .+.  ..+       +...++..+.+ +
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al-~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAF-K   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHT-T
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHh-C
Confidence            4579999997 9999999999998885       89999998    33221 111  111       11235666666 8


Q ss_pred             CCCEEEEecCchh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           88 HPDVVLLSTSILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        88 ~aDvVIlavp~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ++|+||++.....                +.++++.+. ...+++++|+.+++
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~-~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID-AVASRNIKVLVVGN  134 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHH-HHSCTTCEEEECSS
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEccC
Confidence            9999999764211                334445553 22236667777764

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.18  E-value=0.00082  Score=63.45  Aligned_cols=90  Identities=21%  Similarity=0.318  Sum_probs=58.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcC-CeEEEE-cCC-CCcHHHHHhC-------------CCceec-ChhhHhhcCCCE
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHH-HTLLVH-SRS-DHSPAVRQQL-------------NAPFFA-DLNDLCELHPDV   91 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G-~~V~~~-dr~-~~~~~~a~~~-------------g~~~~~-~~~~~~~~~aDv   91 (335)
                      +++||+|+| .|.+|..+.+.|.+.. ++++.+ +.+ ..........             .+.... +.++ . .++|+
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~vDv   80 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-H-KDVDV   80 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-G-TTCSE
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-h-cCCCE
Confidence            467999999 8999999999998764 477655 222 1111111111             111211 3333 3 68999


Q ss_pred             EEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           92 VLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        92 VIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ||+|+|.....++...+    ++.|..|+|.++-
T Consensus        81 Vf~atp~~~s~~~a~~~----~~aG~~VId~s~~  110 (350)
T 2ep5_A           81 VLSALPNELAESIELEL----VKNGKIVVSNASP  110 (350)
T ss_dssp             EEECCCHHHHHHHHHHH----HHTTCEEEECSST
T ss_pred             EEECCChHHHHHHHHHH----HHCCCEEEECCcc
Confidence            99999988777776655    3467789998864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.16  E-value=0.00037  Score=59.32  Aligned_cols=67  Identities=16%  Similarity=0.125  Sum_probs=47.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecCc
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp~   98 (335)
                      .|+|.|+|. |.+|..+++.|.+.|++|++++|++.........++..    ..+   ..+++ +++|+||.+...
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~d~vi~~a~~   77 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTV-AGQDAVIVLLGT   77 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHH-TTCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHH-cCCCEEEECccC
Confidence            479999995 99999999999999999999999875432111223321    122   23444 689999988754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.15  E-value=0.003  Score=60.14  Aligned_cols=90  Identities=14%  Similarity=0.170  Sum_probs=67.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCC----CCc---------HHHHHhCCC-ceecChhhHhhcCCCEEE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRS----DHS---------PAVRQQLNA-PFFADLNDLCELHPDVVL   93 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~----~~~---------~~~a~~~g~-~~~~~~~~~~~~~aDvVI   93 (335)
                      ....||.|+|+|.+|..+|+.|...|. +|+++|++    .+.         ...+.+.+. ....++.+++ +++|++|
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav-~~ADVlI  268 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETAL-EGADFFI  268 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHH-TTCSEEE
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHH-ccCCEEE
Confidence            456899999999999999999999998 89999998    432         233444321 2245688888 8999999


Q ss_pred             EecCch-hHHHHHhhccccccCCccEEEEcCC
Q 044593           94 LSTSIL-STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        94 lavp~~-~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      =++.+. ..+++++.+.     ++.+|++++.
T Consensus       269 G~Sap~l~t~emVk~Ma-----~~pIIfalSN  295 (388)
T 1vl6_A          269 GVSRGNILKPEWIKKMS-----RKPVIFALAN  295 (388)
T ss_dssp             ECSCSSCSCHHHHTTSC-----SSCEEEECCS
T ss_pred             EeCCCCccCHHHHHhcC-----CCCEEEEcCC
Confidence            766533 3577777653     5679999875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.13  E-value=0.002  Score=60.19  Aligned_cols=91  Identities=18%  Similarity=0.205  Sum_probs=70.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-cChhhHhhcCCCEEEEecCch-hHHHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-ADLNDLCELHPDVVLLSTSIL-STQSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-~~~~~~~~~~aDvVIlavp~~-~~~~vl~  106 (335)
                      ..+.+|.|+|+|.+|...+..++..|.+|++.+++++..+.++++|.... .+.+.+. +.+|+||-|+... .....++
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~-~~~D~vid~~g~~~~~~~~~~  253 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCK-EELDFIISTIPTHYDLKDYLK  253 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCC-SCEEEEEECCCSCCCHHHHHT
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHh-cCCCEEEECCCcHHHHHHHHH
Confidence            45789999999999999999999999999999999999988999998532 3334433 4789999999877 5555554


Q ss_pred             hccccccCCccEEEEcCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .+     +++..++.++..
T Consensus       254 ~l-----~~~G~iv~~G~~  267 (348)
T 3two_A          254 LL-----TYNGDLALVGLP  267 (348)
T ss_dssp             TE-----EEEEEEEECCCC
T ss_pred             HH-----hcCCEEEEECCC
Confidence            44     456677777644

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.13  E-value=0.00034  Score=65.84  Aligned_cols=88  Identities=14%  Similarity=0.153  Sum_probs=56.6

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCC---eEEEE-cCCCCcHHHHHhCCC--cee-cChhhHhhcCCCEEEEecCchhHH
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHH---TLLVH-SRSDHSPAVRQQLNA--PFF-ADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~-dr~~~~~~~a~~~g~--~~~-~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      +|||+|+| .|.+|..+.+.|.++++   +++.+ +++..... ..-.|.  ... .+..+ . .++|+||.|+|.....
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~-~~~~g~~i~~~~~~~~~-~-~~~DvV~~a~g~~~s~   82 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR-MGFAESSLRVGDVDSFD-F-SSVGLAFFAAAAEVSR   82 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE-EEETTEEEECEEGGGCC-G-GGCSEEEECSCHHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCc-cccCCcceEEecCCHHH-h-cCCCEEEEcCCcHHHH
Confidence            47999999 79999999999987665   45444 44321100 000111  111 12222 3 6799999999988777


Q ss_pred             HHHhhccccccCCccEEEEcCCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      +....+    ++.|..++|+++.
T Consensus        83 ~~a~~~----~~aG~kvId~Sa~  101 (340)
T 2hjs_A           83 AHAERA----RAAGCSVIDLSGA  101 (340)
T ss_dssp             HHHHHH----HHTTCEEEETTCT
T ss_pred             HHHHHH----HHCCCEEEEeCCC
Confidence            776655    3467889998764

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.11  E-value=0.00043  Score=64.57  Aligned_cols=91  Identities=10%  Similarity=0.058  Sum_probs=62.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecChhhHh---hcCCCEEEEecCchhHHH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADLNDLC---ELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~~~~~---~~~aDvVIlavp~~~~~~  103 (335)
                      .++|.|+|+|.+|..+++.|.+.|+ |+++|+|++..+ +.+.|+..    .++.+.+.   .+++|.+|++++.+...-
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~  192 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI  192 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHH
Confidence            5689999999999999999999999 999999998887 77777642    22322221   168999999999775332


Q ss_pred             HHhhccccccCCc-cEEEEcCC
Q 044593          104 VLKSIPFQRLKRS-TLFVDVLS  124 (335)
Q Consensus       104 vl~~l~~~~l~~~-~iVvd~~S  124 (335)
                      ...... ..+.++ .+++-+.+
T Consensus       193 ~~~~~a-r~~~~~~~iiar~~~  213 (336)
T 1lnq_A          193 HCILGI-RKIDESVRIIAEAER  213 (336)
T ss_dssp             HHHHHH-HTTCTTSEEEEECSS
T ss_pred             HHHHHH-HHHCCCCeEEEEECC
Confidence            222221 224444 55665543

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=97.10  E-value=0.00038  Score=65.40  Aligned_cols=90  Identities=17%  Similarity=0.257  Sum_probs=56.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc-CCeEEEE-cC--CCCcHHHHH----hCCC---------------------cee--c
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH-HHTLLVH-SR--SDHSPAVRQ----QLNA---------------------PFF--A   79 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~-G~~V~~~-dr--~~~~~~~a~----~~g~---------------------~~~--~   79 (335)
                      ++||+|+|+|.||..+++.|.+. +++|+++ |+  +.+......    ..|.                     ...  .
T Consensus         3 ~ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~   82 (337)
T 3e5r_O            3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIR   82 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCS
T ss_pred             ceEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecC
Confidence            35999999999999999999876 4576544 53  222221111    1110                     011  1


Q ss_pred             ChhhHhh--cCCCEEEEecCchhHHHHHhhccccccCCcc--EEEEcCC
Q 044593           80 DLNDLCE--LHPDVVLLSTSILSTQSVLKSIPFQRLKRST--LFVDVLS  124 (335)
Q Consensus        80 ~~~~~~~--~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~--iVvd~~S  124 (335)
                      +++++.+  .++|+||.|+|.....+.....    ++.|.  +|+|.++
T Consensus        83 dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~----l~aGak~VVIs~pa  127 (337)
T 3e5r_O           83 NPDEIPWAEAGAEYVVESTGVFTDKEKAAAH----LKGGAKKVVISAPS  127 (337)
T ss_dssp             CGGGCCHHHHTCSEEEECSSSCCSHHHHTHH----HHTTCSEEEESSCC
T ss_pred             ChHHccccccCCCEEEECCCchhhHHHHHHH----HHcCCCEEEEecCC
Confidence            4444311  3799999999998877766554    33455  7887764

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.09  E-value=0.003  Score=56.58  Aligned_cols=62  Identities=24%  Similarity=0.274  Sum_probs=46.2

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHc-CCeEE-EEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARH-HHTLL-VHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~-G~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      |||+|+|+ |.||..++..+.+. +++++ ++|++.               ++++++..++|+||-++++....+.+...
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~---------------dl~~~~~~~~DvvIDfT~p~a~~~~~~~a   65 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD---------------PLSLLTDGNTEVVIDFTHPDVVMGNLEFL   65 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC---------------CTHHHHHTTCCEEEECSCTTTHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC---------------CHHHHhccCCcEEEEccChHHHHHHHHHH
Confidence            68999996 99999999999865 88876 567642               23444313789999888888777766654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.08  E-value=0.00085  Score=65.42  Aligned_cols=67  Identities=12%  Similarity=0.082  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC----cHHHHHhCCCceec--ChhhHhhcC-CCEEEEec
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH----SPAVRQQLNAPFFA--DLNDLCELH-PDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~----~~~~a~~~g~~~~~--~~~~~~~~~-aDvVIlav   96 (335)
                      .+++||.|||.|..|.+.|+.|.+.|++|+++|.++.    ..+...+.|+....  +..+.. .+ +|+||++.
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~-~~~~d~vv~sp   80 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELL-DEDFCYMIKNP   80 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGG-GSCEEEEEECT
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhh-cCCCCEEEECC
Confidence            4578999999999999999999999999999999653    23445667886532  233344 55 89999964

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.05  E-value=0.00044  Score=60.09  Aligned_cols=67  Identities=16%  Similarity=0.187  Sum_probs=48.2

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecCch
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp~~   99 (335)
                      +|||.|.| .|.+|..++..|.+.|++|++++|++...... ..++..    ..+   ..+++ +++|+||.+....
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~-~~~d~vi~~a~~~   78 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE-NEHLKVKKADVSSLDEVCEVC-KGADAVISAFNPG   78 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC-CTTEEEECCCTTCHHHHHHHH-TTCSEEEECCCC-
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc-cCceEEEEecCCCHHHHHHHh-cCCCEEEEeCcCC
Confidence            58999999 69999999999999999999999997543211 122221    122   33445 7899999987553

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.05  E-value=0.00085  Score=65.59  Aligned_cols=89  Identities=15%  Similarity=0.248  Sum_probs=64.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC-C---eEEEEcCCCCcHHHHHhCCCce-----ecC-----hhhHhhcCCCEEEEec
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH-H---TLLVHSRSDHSPAVRQQLNAPF-----FAD-----LNDLCELHPDVVLLST   96 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G-~---~V~~~dr~~~~~~~a~~~g~~~-----~~~-----~~~~~~~~aDvVIlav   96 (335)
                      .+||.|||+|.||+.++..+.++. +   +|++.|++....+.....|+..     ..+     +.+++ ++.|+||-+.
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl-~~~DvVIN~s   91 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTL-EENDFLIDVS   91 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGC-CTTCEEEECC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHh-cCCCEEEECC
Confidence            478999999999999999998764 4   6899998875444344445432     122     22344 4579999999


Q ss_pred             CchhHHHHHhhccccccCCccEEEEcCC
Q 044593           97 SILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +......+++..    +..|..++|++.
T Consensus        92 ~~~~~l~Im~ac----leaGv~YlDTa~  115 (480)
T 2ph5_A           92 IGISSLALIILC----NQKGALYINAAT  115 (480)
T ss_dssp             SSSCHHHHHHHH----HHHTCEEEESSC
T ss_pred             ccccCHHHHHHH----HHcCCCEEECCC
Confidence            888877777765    346788999874

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.02  E-value=0.0014  Score=61.39  Aligned_cols=91  Identities=13%  Similarity=0.120  Sum_probs=65.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCcee-----cChhhHhh-----cCCCEEEEecCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLCE-----LHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~~-----~~aDvVIlavp~   98 (335)
                      .+.+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|....     .+..+.+.     ..+|+||-|+..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            56799999999999999999999999 99999999888887888887422     12222110     258999999986


Q ss_pred             -hhHHHHHhhccccccCCccEEEEcCCC
Q 044593           99 -LSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        99 -~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                       ..+...++.+     +++..++.+++.
T Consensus       247 ~~~~~~~~~~l-----~~~G~iv~~g~~  269 (348)
T 2d8a_A          247 PKALEQGLQAV-----TPAGRVSLLGLY  269 (348)
T ss_dssp             HHHHHHHHHHE-----EEEEEEEECCCC
T ss_pred             HHHHHHHHHHH-----hcCCEEEEEccC
Confidence             3344444443     456677777654

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=97.02  E-value=0.00065  Score=64.40  Aligned_cols=90  Identities=12%  Similarity=0.065  Sum_probs=59.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcC-CeEEEE-cCCCC--cHHHHHh-----------CCCcee-cChhhHhhcCCCEE
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHH-HTLLVH-SRSDH--SPAVRQQ-----------LNAPFF-ADLNDLCELHPDVV   92 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G-~~V~~~-dr~~~--~~~~a~~-----------~g~~~~-~~~~~~~~~~aDvV   92 (335)
                      +++||+||| .|..|.-+.+.|.+.. .++..+ .++..  .....-.           ...... .+.++ . .++|+|
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~-~~vDvv   83 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M-DDVDII   83 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C-TTCCEE
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h-cCCCEE
Confidence            457999999 6999999999887754 366443 33332  2221100           011211 23333 3 689999


Q ss_pred             EEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           93 LLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        93 Ilavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      |+|+|.....++...+    ++.|+.|+|+++-
T Consensus        84 f~a~p~~~s~~~a~~~----~~~G~~vIDlSa~  112 (359)
T 4dpk_A           84 FSPLPQGAAGPVEEQF----AKEGFPVISNSPD  112 (359)
T ss_dssp             EECCCTTTHHHHHHHH----HHTTCEEEECSST
T ss_pred             EECCChHHHHHHHHHH----HHCCCEEEEcCCC
Confidence            9999999888877765    3578999999874

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=97.02  E-value=0.00065  Score=64.40  Aligned_cols=90  Identities=12%  Similarity=0.065  Sum_probs=59.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcC-CeEEEE-cCCCC--cHHHHHh-----------CCCcee-cChhhHhhcCCCEE
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHH-HTLLVH-SRSDH--SPAVRQQ-----------LNAPFF-ADLNDLCELHPDVV   92 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G-~~V~~~-dr~~~--~~~~a~~-----------~g~~~~-~~~~~~~~~~aDvV   92 (335)
                      +++||+||| .|..|.-+.+.|.+.. .++..+ .++..  .....-.           ...... .+.++ . .++|+|
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~-~~vDvv   83 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M-DDVDII   83 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C-TTCCEE
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h-cCCCEE
Confidence            457999999 6999999999887754 366443 33332  2221100           011211 23333 3 689999


Q ss_pred             EEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           93 LLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        93 Ilavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      |+|+|.....++...+    ++.|+.|+|+++-
T Consensus        84 f~a~p~~~s~~~a~~~----~~~G~~vIDlSa~  112 (359)
T 4dpl_A           84 FSPLPQGAAGPVEEQF----AKEGFPVISNSPD  112 (359)
T ss_dssp             EECCCTTTHHHHHHHH----HHTTCEEEECSST
T ss_pred             EECCChHHHHHHHHHH----HHCCCEEEEcCCC
Confidence            9999999888877765    3578999999874

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.99  E-value=0.0025  Score=60.12  Aligned_cols=89  Identities=15%  Similarity=0.178  Sum_probs=60.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCC-eEEEEc-CCCC--cHHHH---HhCCCcee-cChhhHhhcCCCEEEEecCchh
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHH-TLLVHS-RSDH--SPAVR---QQLNAPFF-ADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~d-r~~~--~~~~a---~~~g~~~~-~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      .+.||+||| .|..|.-+.+.|.+... ++..+. ++..  .....   ....+... .+.+++. .++|+||+|+|...
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~-~~~Dvvf~alp~~~   90 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVS-KNCDVLFTALPAGA   90 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHH-HHCSEEEECCSTTH
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhh-cCCCEEEECCCcHH
Confidence            467999999 69999999999998753 665543 2221  22210   01222221 2344554 57999999999998


Q ss_pred             HHHHHhhccccccCCccEEEEcCCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ..++...+      .|+.|+|.++-
T Consensus        91 s~~~~~~~------~g~~VIDlSsd  109 (351)
T 1vkn_A           91 SYDLVREL------KGVKIIDLGAD  109 (351)
T ss_dssp             HHHHHTTC------CSCEEEESSST
T ss_pred             HHHHHHHh------CCCEEEECChh
Confidence            88877654      58899999875

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=96.98  E-value=0.00063  Score=66.93  Aligned_cols=64  Identities=16%  Similarity=0.267  Sum_probs=43.2

Q ss_pred             CeEEEEcccHHHHHH--HHHHHH----c--CCeEEEEcCCCCcHHH--------HHhCCC----ceecChhhHhhcCCCE
Q 044593           32 LKIAVIGFGNFGQFL--AKAFAR----H--HHTLLVHSRSDHSPAV--------RQQLNA----PFFADLNDLCELHPDV   91 (335)
Q Consensus        32 ~kI~IIG~G~mG~si--A~~L~~----~--G~~V~~~dr~~~~~~~--------a~~~g~----~~~~~~~~~~~~~aDv   91 (335)
                      |||+|||.|.+|...  ...+..    .  +.+|+.+|.+++..+.        +...|.    ..++|..+++ ++||+
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl-~gAD~   79 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAI-EGADF   79 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHH-TTCSE
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHh-CCCCE
Confidence            799999999987542  222332    1  2479999999865432        112232    3467888877 89999


Q ss_pred             EEEec
Q 044593           92 VLLST   96 (335)
Q Consensus        92 VIlav   96 (335)
                      ||++.
T Consensus        80 Vi~~~   84 (477)
T 3u95_A           80 IINTA   84 (477)
T ss_dssp             EEECC
T ss_pred             EEECc
Confidence            99986

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=96.98  E-value=0.00066  Score=63.63  Aligned_cols=89  Identities=12%  Similarity=0.132  Sum_probs=56.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc------C--CeE-EEEcCCCCcHHH-------HH---hCCCc-eec---ChhhHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH------H--HTL-LVHSRSDHSPAV-------RQ---QLNAP-FFA---DLNDLC   85 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~------G--~~V-~~~dr~~~~~~~-------a~---~~g~~-~~~---~~~~~~   85 (335)
                      |+.+||+|||+|.||+.++..+.+.      |  ++| .++|++++..+.       +.   ..++. .++   +.++++
T Consensus         4 M~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll   83 (331)
T 3c8m_A            4 MKTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEAL   83 (331)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHH
T ss_pred             CcEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHh
Confidence            3457999999999999999999764      2  465 467888653221       11   12332 333   677765


Q ss_pred             hcCCCEEEEecCch----hHHHHHhhccccccCCccEEEE
Q 044593           86 ELHPDVVLLSTSIL----STQSVLKSIPFQRLKRSTLFVD  121 (335)
Q Consensus        86 ~~~aDvVIlavp~~----~~~~vl~~l~~~~l~~~~iVvd  121 (335)
                      ..+.|+|+.|+|..    ...+++.+.    ++.|.-|+.
T Consensus        84 ~~~iDvVv~~t~~~~~~~~~~~~~~~A----L~aGkhVvt  119 (331)
T 3c8m_A           84 ARDFDIVVDATPASADGKKELAFYKET----FENGKDVVT  119 (331)
T ss_dssp             HSSCSEEEECSCCCSSSHHHHHHHHHH----HHTTCEEEE
T ss_pred             CCCCCEEEECCCCCCccchHHHHHHHH----HHCCCeEEe
Confidence            24799999999985    333333322    445666654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.97  E-value=0.0013  Score=61.17  Aligned_cols=79  Identities=19%  Similarity=0.274  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCc----HH---HHHhCCCce----ecC---hhhHhhc--CCCE
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHS----PA---VRQQLNAPF----FAD---LNDLCEL--HPDV   91 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~----~~---~a~~~g~~~----~~~---~~~~~~~--~aDv   91 (335)
                      |.+|+|.|+|. |.+|+.++..|.+.|++|++++|++..    ..   .....++..    ..+   +.+++ +  ++|+
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~-~~~~~d~   86 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKIL-KEHEIDI   86 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHH-HHTTCCE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHH-hhCCCCE
Confidence            55689999995 999999999999999999999998721    11   112345532    122   23344 6  8999


Q ss_pred             EEEecCchh---HHHHHhhc
Q 044593           92 VLLSTSILS---TQSVLKSI  108 (335)
Q Consensus        92 VIlavp~~~---~~~vl~~l  108 (335)
                      ||.+.....   ...+++..
T Consensus        87 Vi~~a~~~n~~~~~~l~~aa  106 (346)
T 3i6i_A           87 VVSTVGGESILDQIALVKAM  106 (346)
T ss_dssp             EEECCCGGGGGGHHHHHHHH
T ss_pred             EEECCchhhHHHHHHHHHHH
Confidence            999887643   34444443

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.95  E-value=0.00098  Score=63.35  Aligned_cols=89  Identities=16%  Similarity=0.177  Sum_probs=56.6

Q ss_pred             CCeEEEEc-ccHHHHHHHH-HHHHcCC---eEEEEcCCCC-c-HHHHHhCCCcee--cChhhHhhcCCCEEEEecCchhH
Q 044593           31 SLKIAVIG-FGNFGQFLAK-AFARHHH---TLLVHSRSDH-S-PAVRQQLNAPFF--ADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~-~L~~~G~---~V~~~dr~~~-~-~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      |+||+|+| .|.+|..+.+ .|.+.++   +++.+..+.. . ........+...  .+.+++  .++|+||.|+|....
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~~--~~~DvVf~a~g~~~s   78 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEAL--KALDIIVTCQGGDYT   78 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHH--HTCSEEEECSCHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHHh--cCCCEEEECCCchhH
Confidence            46999999 8999999999 5555554   4544433221 1 110111222222  234443  689999999998888


Q ss_pred             HHHHhhccccccCCcc--EEEEcCCC
Q 044593          102 QSVLKSIPFQRLKRST--LFVDVLSV  125 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~--iVvd~~Sv  125 (335)
                      .+....+.    +.|.  +|+|.++.
T Consensus        79 ~~~a~~~~----~~G~k~vVID~ss~  100 (367)
T 1t4b_A           79 NEIYPKLR----ESGWQGYWIDAASS  100 (367)
T ss_dssp             HHHHHHHH----HTTCCCEEEECSST
T ss_pred             HHHHHHHH----HCCCCEEEEcCChh
Confidence            77777663    3454  89999875

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.94  E-value=0.0008  Score=58.40  Aligned_cols=66  Identities=15%  Similarity=0.251  Sum_probs=47.5

Q ss_pred             CeEEEEc-ccHHHHHHHHHHH-HcCCeEEEEcCCCC-cHHHH--HhCCCce----ecC---hhhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIG-FGNFGQFLAKAFA-RHHHTLLVHSRSDH-SPAVR--QQLNAPF----FAD---LNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~-~~G~~V~~~dr~~~-~~~~a--~~~g~~~----~~~---~~~~~~~~aDvVIlavp~   98 (335)
                      ++|.|+| .|.+|..+++.|. +.|++|++++|+++ ..+..  ...++..    .++   ..+++ +++|+||.+...
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-~~~d~vv~~ag~   83 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAV-TNAEVVFVGAME   83 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHH-TTCSEEEESCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHH-cCCCEEEEcCCC
Confidence            3499999 6999999999999 89999999999976 44322  2222221    122   23445 789999998865

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.92  E-value=0.00058  Score=64.87  Aligned_cols=88  Identities=15%  Similarity=0.166  Sum_probs=57.5

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCC---eEEEEc-CCCCcHHHHHhCCC--cee-cChhhHhhcCCCEEEEecCchhHH
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHH---TLLVHS-RSDHSPAVRQQLNA--PFF-ADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~d-r~~~~~~~a~~~g~--~~~-~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      ++||+||| .|..|.-+.+.|.+.+|   ++..+. ++..-.... ..|.  ... .+..+ . .++|+||+|+|.....
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~-~~~~~~~~~~~~~~~-~-~~~Dvvf~a~~~~~s~   78 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK-FKDQDITIEETTETA-F-EGVDIALFSAGSSTSA   78 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE-ETTEEEEEEECCTTT-T-TTCSEEEECSCHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce-ecCCCceEeeCCHHH-h-cCCCEEEECCChHhHH
Confidence            47999999 79999999999998766   344333 222111000 1121  111 12223 3 6899999999988877


Q ss_pred             HHHhhccccccCCccEEEEcCCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      +....+    ++.|+.|+|+++-
T Consensus        79 ~~a~~~----~~~G~~vIDlSa~   97 (366)
T 3pwk_A           79 KYAPYA----VKAGVVVVDNTSY   97 (366)
T ss_dssp             HHHHHH----HHTTCEEEECSST
T ss_pred             HHHHHH----HHCCCEEEEcCCc
Confidence            777665    3478899999874

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.92  E-value=0.0017  Score=60.69  Aligned_cols=70  Identities=20%  Similarity=0.303  Sum_probs=47.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc---------CCeE-EEEcCCCCcHH-------HHHhC-CCceec--ChhhHhh-cCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH---------HHTL-LVHSRSDHSPA-------VRQQL-NAPFFA--DLNDLCE-LHP   89 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~---------G~~V-~~~dr~~~~~~-------~a~~~-g~~~~~--~~~~~~~-~~a   89 (335)
                      ++||+|||+|.||+.++..+.+.         +.+| .++|+++...+       ..... ....++  +..+++. .+.
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~i   81 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADY   81 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCC
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCC
Confidence            57999999999999999999875         4565 45688754321       11111 122333  7777752 469


Q ss_pred             CEEEEecCchh
Q 044593           90 DVVLLSTSILS  100 (335)
Q Consensus        90 DvVIlavp~~~  100 (335)
                      |+|+.|||...
T Consensus        82 DvVv~~tp~~~   92 (327)
T 3do5_A           82 DVLIEASVTRV   92 (327)
T ss_dssp             SEEEECCCCC-
T ss_pred             CEEEECCCCcc
Confidence            99999999874

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=96.87  E-value=0.00055  Score=64.19  Aligned_cols=83  Identities=19%  Similarity=0.235  Sum_probs=54.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc---------CCeE-EEEcCCCCcHHHHHhCCC-ceecChhhHhhcCCCEEEEecCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH---------HHTL-LVHSRSDHSPAVRQQLNA-PFFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~---------G~~V-~~~dr~~~~~~~a~~~g~-~~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      +.+||+|||+|.||+.++..+.+.         +.+| .++|++....+   ..+. ..++|.++++  +.|+|+.|+|.
T Consensus         2 k~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~---~~~~~~~~~d~~~ll--~iDvVve~t~~   76 (332)
T 2ejw_A            2 EALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR---AIPQELLRAEPFDLL--EADLVVEAMGG   76 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC---SSCGGGEESSCCCCT--TCSEEEECCCC
T ss_pred             CeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh---ccCcccccCCHHHHh--CCCEEEECCCC
Confidence            357899999999999999999875         3455 56688864321   1111 2455666665  79999999997


Q ss_pred             hh-HHHHHhhccccccCCccEEEE
Q 044593           99 LS-TQSVLKSIPFQRLKRSTLFVD  121 (335)
Q Consensus        99 ~~-~~~vl~~l~~~~l~~~~iVvd  121 (335)
                      .. ..+...+.    ++.|.-|+.
T Consensus        77 ~~~a~~~~~~A----L~aGKhVVt   96 (332)
T 2ejw_A           77 VEAPLRLVLPA----LEAGIPLIT   96 (332)
T ss_dssp             SHHHHHHHHHH----HHTTCCEEE
T ss_pred             cHHHHHHHHHH----HHcCCeEEE
Confidence            64 33444322    334544443

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.87  E-value=0.00051  Score=59.57  Aligned_cols=65  Identities=15%  Similarity=0.108  Sum_probs=47.3

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc----eecC-h---hhHhhcCCCEEEEecCch
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP----FFAD-L---NDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~----~~~~-~---~~~~~~~aDvVIlavp~~   99 (335)
                      |||.|+| .|.+|..++..|.+.|++|++++|+++.....  .++.    ...+ .   .+++ +++|+||.+....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~-~~~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--NNVKAVHFDVDWTPEEMAKQL-HGMDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--TTEEEEECCTTSCHHHHHTTT-TTCSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--CCceEEEecccCCHHHHHHHH-cCCCEEEECCcCC
Confidence            6899999 79999999999999999999999997543211  2222    1122 2   3344 6899999887643

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.84  E-value=0.0012  Score=61.77  Aligned_cols=70  Identities=14%  Similarity=0.153  Sum_probs=48.5

Q ss_pred             cCCCCCeEEEEc-ccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHh-CCCce----ec-C---hhhHhhcCCCEEEEe
Q 044593           27 VKSTSLKIAVIG-FGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQ-LNAPF----FA-D---LNDLCELHPDVVLLS   95 (335)
Q Consensus        27 ~~~~~~kI~IIG-~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~~-~g~~~----~~-~---~~~~~~~~aDvVIla   95 (335)
                      ..+++|+|.|.| .|.+|+.++..|.+. |++|++++|++........ .++..    .. +   ..+++ +++|+||-+
T Consensus        20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~-~~~d~Vih~   98 (372)
T 3slg_A           20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHV-KKCDVILPL   98 (372)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHH-HHCSEEEEC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHh-ccCCEEEEc
Confidence            446788999999 699999999999998 9999999999765432222 33321    12 2   23344 679999975


Q ss_pred             cC
Q 044593           96 TS   97 (335)
Q Consensus        96 vp   97 (335)
                      ..
T Consensus        99 A~  100 (372)
T 3slg_A           99 VA  100 (372)
T ss_dssp             BC
T ss_pred             Cc
Confidence            53

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=96.83  E-value=0.0041  Score=60.09  Aligned_cols=67  Identities=13%  Similarity=0.148  Sum_probs=42.3

Q ss_pred             CCeEEEEcccHH-HHHHHHHHHH--c---CCeEEEEcCCCCcHHHHHh-------CCCc--eecChhhHhhcCCCEEEEe
Q 044593           31 SLKIAVIGFGNF-GQFLAKAFAR--H---HHTLLVHSRSDHSPAVRQQ-------LNAP--FFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        31 ~~kI~IIG~G~m-G~siA~~L~~--~---G~~V~~~dr~~~~~~~a~~-------~g~~--~~~~~~~~~~~~aDvVIla   95 (335)
                      .+||+|||+|.. +..+...|..  .   +.+|+++|++++..+.+..       ....  .++|..+.+ ++||+||++
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al-~~AD~Viit   80 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAV-VDAKYVIFQ   80 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHH-TTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHh-CCCCEEEEc
Confidence            579999999884 2222233444  3   4589999999865432211       1122  345665666 899999999


Q ss_pred             cCc
Q 044593           96 TSI   98 (335)
Q Consensus        96 vp~   98 (335)
                      .-.
T Consensus        81 agv   83 (417)
T 1up7_A           81 FRP   83 (417)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            844

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.82  E-value=0.0017  Score=59.83  Aligned_cols=67  Identities=25%  Similarity=0.303  Sum_probs=47.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp   97 (335)
                      .+|+|.|.| .|.+|+.++..|.+.|++|++++|++...+.....++..    ..+   ..+++ +++|+||.+..
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~-~~~d~vih~a~   86 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERAL-RGLDGVIFSAG   86 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHT-TTCSEEEEC--
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHH-cCCCEEEECCc
Confidence            457999999 699999999999999999999999876543222224421    122   23444 68999998764

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.78  E-value=0.0036  Score=59.17  Aligned_cols=91  Identities=15%  Similarity=0.157  Sum_probs=66.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---cChh---hHhhcCCCEEEEecCch-hH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---ADLN---DLCELHPDVVLLSTSIL-ST  101 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~~~~---~~~~~~aDvVIlavp~~-~~  101 (335)
                      ..+.+|.|+|+|.+|...+..++..|.+|++.+++++..+.++++|....   .+.+   ++. ..+|+||-|+... .+
T Consensus       193 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~-~g~Dvvid~~g~~~~~  271 (369)
T 1uuf_A          193 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHL-KSFDFILNTVAAPHNL  271 (369)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTT-TCEEEEEECCSSCCCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhh-cCCCEEEECCCCHHHH
Confidence            35689999999999999999999999999999999988888888887532   1211   122 4689999999865 35


Q ss_pred             HHHHhhccccccCCccEEEEcCCC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ...++.+     +++..++.++..
T Consensus       272 ~~~~~~l-----~~~G~iv~~G~~  290 (369)
T 1uuf_A          272 DDFTTLL-----KRDGTMTLVGAP  290 (369)
T ss_dssp             HHHHTTE-----EEEEEEEECCCC
T ss_pred             HHHHHHh-----ccCCEEEEeccC
Confidence            5555443     455667777643

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.77  E-value=0.0021  Score=58.30  Aligned_cols=68  Identities=25%  Similarity=0.305  Sum_probs=48.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcH------H---HHHhCCCce----ecC---hhhHhhcCCCEEE
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSP------A---VRQQLNAPF----FAD---LNDLCELHPDVVL   93 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~------~---~a~~~g~~~----~~~---~~~~~~~~aDvVI   93 (335)
                      +++|.|+|. |.+|+.++..|.+.|++|++.+|++...      +   .....|+..    ..+   +.+++ +++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~-~~~d~vi   82 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAV-KNVDVVI   82 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHH-HTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHH-cCCCEEE
Confidence            678999995 9999999999999999999999985321      1   112345532    222   23444 6899999


Q ss_pred             EecCch
Q 044593           94 LSTSIL   99 (335)
Q Consensus        94 lavp~~   99 (335)
                      .++...
T Consensus        83 ~~a~~~   88 (308)
T 1qyc_A           83 STVGSL   88 (308)
T ss_dssp             ECCCGG
T ss_pred             ECCcch
Confidence            988753

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.74  E-value=0.0098  Score=56.18  Aligned_cols=91  Identities=12%  Similarity=0.139  Sum_probs=63.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec-------ChhhHh----hcCCCEEEEec
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA-------DLNDLC----ELHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~-------~~~~~~----~~~aDvVIlav   96 (335)
                      ....+|.|+|+|.+|...+..++..|. +|++.|++++..+.++++|+...-       +..+.+    ...+|+||-|+
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~  271 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECI  271 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECC
Confidence            356899999999999999999999998 899999999999989999875321       111211    02578888888


Q ss_pred             Cchh-HHHHHhhccccccCCc-cEEEEcCC
Q 044593           97 SILS-TQSVLKSIPFQRLKRS-TLFVDVLS  124 (335)
Q Consensus        97 p~~~-~~~vl~~l~~~~l~~~-~iVvd~~S  124 (335)
                      .... +...++.     ++++ ..++.++.
T Consensus       272 g~~~~~~~~~~~-----l~~g~G~iv~~G~  296 (378)
T 3uko_A          272 GNVSVMRAALEC-----CHKGWGTSVIVGV  296 (378)
T ss_dssp             CCHHHHHHHHHT-----BCTTTCEEEECSC
T ss_pred             CCHHHHHHHHHH-----hhccCCEEEEEcc
Confidence            7643 3333333     3453 55666553

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.74  E-value=0.0012  Score=59.67  Aligned_cols=66  Identities=14%  Similarity=0.204  Sum_probs=49.1

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp~   98 (335)
                      |||.|.| .|.+|+.++..|.+. |++|++.+|+++........++..    ..+   +.+++ +++|+||.+...
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~-~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAF-KGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHT-TTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHH-hCCCEEEEeCCC
Confidence            6899999 699999999999998 999999999976543333345432    122   33445 789999998764

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=96.72  E-value=0.0041  Score=58.52  Aligned_cols=67  Identities=21%  Similarity=0.173  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCCCcH--H-HHHh---CC------CceecChhhHhhcC
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSDHSP--A-VRQQ---LN------APFFADLNDLCELH   88 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~~~~--~-~a~~---~g------~~~~~~~~~~~~~~   88 (335)
                      ++.-||+|+|+ |.||++++..|+....       ++.++|.++...  + .+.+   ..      +...++..+.+ ++
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~-~~  100 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAF-DG  100 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHT-TT
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHh-CC
Confidence            44569999996 9999999999987643       789999986422  1 1111   11      12345666666 89


Q ss_pred             CCEEEEec
Q 044593           89 PDVVLLST   96 (335)
Q Consensus        89 aDvVIlav   96 (335)
                      +|+||++-
T Consensus       101 advVvi~a  108 (345)
T 4h7p_A          101 VAIAIMCG  108 (345)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            99999965

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=96.72  E-value=0.0015  Score=61.00  Aligned_cols=93  Identities=10%  Similarity=0.059  Sum_probs=53.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-------CCeEE-EEcCCCCc----------HHHHHhCC-Cce-ecChhhHh-hc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-------HHTLL-VHSRSDHS----------PAVRQQLN-APF-FADLNDLC-EL   87 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-------G~~V~-~~dr~~~~----------~~~a~~~g-~~~-~~~~~~~~-~~   87 (335)
                      |+..||+|||+|.||+.+++.|.+.       +.+|+ ++|++...          .+...+.| +.. ..+..+++ ..
T Consensus         2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~   81 (325)
T 3ing_A            2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGE   81 (325)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTS
T ss_pred             CceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCC
Confidence            4567999999999999999999874       34554 55776531          11122233 221 11445544 14


Q ss_pred             CCCEEEEecCchhH-HHHHhhccccccCCccEEEEc
Q 044593           88 HPDVVLLSTSILST-QSVLKSIPFQRLKRSTLFVDV  122 (335)
Q Consensus        88 ~aDvVIlavp~~~~-~~vl~~l~~~~l~~~~iVvd~  122 (335)
                      +.|+|+.|||.... ....+.+. ..++.|.-|+..
T Consensus        82 ~iDvVVe~T~~~~~~~pa~~~~~-~aL~aGkhVVta  116 (325)
T 3ing_A           82 AADLLVDCTPASRDGVREYSLYR-MAFESGMNVVTA  116 (325)
T ss_dssp             CCSEEEECCCCCSSSHHHHHHHH-HHHHTTCEEEEC
T ss_pred             CCCEEEECCCCccccchHHHHHH-HHHHCCCeEEEc
Confidence            68999999997532 21122121 234566666643

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.71  E-value=0.0036  Score=53.39  Aligned_cols=91  Identities=18%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---c--Chh-hHhh----cCCCEEEEecC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---A--DLN-DLCE----LHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~--~~~-~~~~----~~aDvVIlavp   97 (335)
                      ..+++|.|+| .|.+|..++..++..|++|++++++++..+.+++.|....   .  +.. .+..    ...|++|-++.
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g  116 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA  116 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc
Confidence            3567899999 6999999999999999999999998877666766665321   1  111 1110    14678877775


Q ss_pred             chhHHHHHhhccccccCCccEEEEcCC
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .......++.     ++++..++.+++
T Consensus       117 ~~~~~~~~~~-----l~~~G~~v~~g~  138 (198)
T 1pqw_A          117 GEAIQRGVQI-----LAPGGRFIELGK  138 (198)
T ss_dssp             THHHHHHHHT-----EEEEEEEEECSC
T ss_pred             hHHHHHHHHH-----hccCCEEEEEcC
Confidence            4333333333     345556666654

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.70  E-value=0.011  Score=55.78  Aligned_cols=89  Identities=12%  Similarity=0.028  Sum_probs=62.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec-------ChhhHhh----cCCCEEEEecC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA-------DLNDLCE----LHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~-------~~~~~~~----~~aDvVIlavp   97 (335)
                      .+.+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|+...-       +..+.+.    ..+|+||-|+.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            46799999999999999999888998 899999999988888899875321       1222110    25799998887


Q ss_pred             ch-hHHHHHhhccccccCCc-cEEEEcC
Q 044593           98 IL-STQSVLKSIPFQRLKRS-TLFVDVL  123 (335)
Q Consensus        98 ~~-~~~~vl~~l~~~~l~~~-~iVvd~~  123 (335)
                      .. .+...++.     ++++ ..++.++
T Consensus       271 ~~~~~~~~~~~-----l~~~~G~iv~~G  293 (373)
T 1p0f_A          271 RIETMMNALQS-----TYCGSGVTVVLG  293 (373)
T ss_dssp             CHHHHHHHHHT-----BCTTTCEEEECC
T ss_pred             CHHHHHHHHHH-----HhcCCCEEEEEc
Confidence            53 33444433     3455 5566665

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.70  E-value=0.0045  Score=58.25  Aligned_cols=90  Identities=16%  Similarity=0.047  Sum_probs=62.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-----cChhhHhh-----cCCCEEEEecCch
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLCE-----LHPDVVLLSTSIL   99 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~~-----~~aDvVIlavp~~   99 (335)
                      .+.+|.|+|+|.+|...+..++..|.+|++.+++++..+.++++|....     .+..+.+.     ..+|+||-|+...
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g~~  268 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAGGA  268 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETTSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCChH
Confidence            4689999999999999999999999999999999888887888777422     11111110     2578888887755


Q ss_pred             hHHHHHhhccccccCCccEEEEcCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .+...++.+     +++..++.++.
T Consensus       269 ~~~~~~~~l-----~~~G~iv~~G~  288 (363)
T 3uog_A          269 GLGQSLKAV-----APDGRISVIGV  288 (363)
T ss_dssp             CHHHHHHHE-----EEEEEEEEECC
T ss_pred             HHHHHHHHh-----hcCCEEEEEec
Confidence            555555444     34455555543

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.67  E-value=0.0022  Score=57.55  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      ...+|.|||+|.+|+.++..|...|. +++++|.+.
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            46799999999999999999999997 889998874

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.67  E-value=0.0031  Score=57.51  Aligned_cols=63  Identities=29%  Similarity=0.380  Sum_probs=45.3

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce------ecChhhHhhcCCCEEEEecC
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF------FADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~------~~~~~~~~~~~aDvVIlavp   97 (335)
                      +|+|.|.| .|.+|+.++..|.+.|++|++.+|++.... ..  ++..      ..+..+++ +++|+||.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~--~~~~~~~Dl~~~~~~~~~-~~~d~Vih~a~   71 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN--DYEYRVSDYTLEDLINQL-NDVDAVVHLAA   71 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--------CCEEEECCCCHHHHHHHT-TTCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC--ceEEEEccccHHHHHHhh-cCCCEEEEccc
Confidence            57999999 699999999999999999999999954433 22  3321      12233445 68999998764

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.67  E-value=0.013  Score=55.18  Aligned_cols=90  Identities=12%  Similarity=0.016  Sum_probs=62.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec-------ChhhHhh----cCCCEEEEecC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA-------DLNDLCE----LHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~-------~~~~~~~----~~aDvVIlavp   97 (335)
                      .+.+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|+...-       +..+.+.    ..+|+||-|+.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            46799999999999999999999998 899999999988888888875321       1222110    25788888887


Q ss_pred             ch-hHHHHHhhccccccCCc-cEEEEcCC
Q 044593           98 IL-STQSVLKSIPFQRLKRS-TLFVDVLS  124 (335)
Q Consensus        98 ~~-~~~~vl~~l~~~~l~~~-~iVvd~~S  124 (335)
                      .. .+...++.     ++++ ..++.++.
T Consensus       275 ~~~~~~~~~~~-----l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 TAQTLKAAVDC-----TVLGWGSCTVVGA  298 (376)
T ss_dssp             CHHHHHHHHHT-----BCTTTCEEEECCC
T ss_pred             CHHHHHHHHHH-----hhcCCCEEEEECC
Confidence            53 33444433     3344 45555543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.65  E-value=0.0049  Score=57.42  Aligned_cols=92  Identities=16%  Similarity=0.158  Sum_probs=65.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec-----ChhhHhh---cCCCEEEEecCc-h
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA-----DLNDLCE---LHPDVVLLSTSI-L   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~-----~~~~~~~---~~aDvVIlavp~-~   99 (335)
                      ..+.+|.|+|+|.+|...+..++..|.+|++.+++++..+.++++|....-     +..+.+.   ..+|+||-++.. .
T Consensus       163 ~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~  242 (339)
T 1rjw_A          163 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKP  242 (339)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHH
Confidence            356899999999999999999999999999999998888888888875321     2111110   368999998876 3


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .+...++.+     +++..++.++..
T Consensus       243 ~~~~~~~~l-----~~~G~~v~~g~~  263 (339)
T 1rjw_A          243 AFQSAYNSI-----RRGGACVLVGLP  263 (339)
T ss_dssp             HHHHHHHHE-----EEEEEEEECCCC
T ss_pred             HHHHHHHHh-----hcCCEEEEeccc
Confidence            344444433     355566666543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.65  E-value=0.015  Score=54.88  Aligned_cols=90  Identities=14%  Similarity=0.080  Sum_probs=63.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec-------ChhhHhh----cCCCEEEEecC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA-------DLNDLCE----LHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~-------~~~~~~~----~~aDvVIlavp   97 (335)
                      .+.+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|+...-       +..+.+.    ..+|+||-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            46799999999999999999999998 899999999988888888875321       1222210    25788888887


Q ss_pred             ch-hHHHHHhhccccccCCc-cEEEEcCC
Q 044593           98 IL-STQSVLKSIPFQRLKRS-TLFVDVLS  124 (335)
Q Consensus        98 ~~-~~~~vl~~l~~~~l~~~-~iVvd~~S  124 (335)
                      .. .+...++.     ++++ ..++.++.
T Consensus       272 ~~~~~~~~~~~-----l~~~~G~iv~~G~  295 (374)
T 1cdo_A          272 NVGVMRNALES-----CLKGWGVSVLVGW  295 (374)
T ss_dssp             CHHHHHHHHHT-----BCTTTCEEEECSC
T ss_pred             CHHHHHHHHHH-----hhcCCcEEEEEcC
Confidence            53 33444433     3455 55666653

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.64  E-value=0.013  Score=55.31  Aligned_cols=89  Identities=13%  Similarity=0.084  Sum_probs=61.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec-------ChhhHhh----cCCCEEEEecC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA-------DLNDLCE----LHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~-------~~~~~~~----~~aDvVIlavp   97 (335)
                      ...+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|+...-       +..+.+.    ..+|+||-|+.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            46799999999999999999999998 899999999888888888875321       1222110    14788888887


Q ss_pred             ch-hHHHHHhhccccccCCc-cEEEEcC
Q 044593           98 IL-STQSVLKSIPFQRLKRS-TLFVDVL  123 (335)
Q Consensus        98 ~~-~~~~vl~~l~~~~l~~~-~iVvd~~  123 (335)
                      .. .+...++.     ++++ ..++.++
T Consensus       271 ~~~~~~~~~~~-----l~~~~G~iv~~G  293 (374)
T 2jhf_A          271 RLDTMVTALSC-----CQEAYGVSVIVG  293 (374)
T ss_dssp             CHHHHHHHHHH-----BCTTTCEEEECS
T ss_pred             CHHHHHHHHHH-----hhcCCcEEEEec
Confidence            53 33444433     3344 4555554

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.63  E-value=0.0021  Score=58.35  Aligned_cols=67  Identities=19%  Similarity=0.253  Sum_probs=48.5

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC-------CcHHH---HHhCCCce----ecC---hhhHhhcCCCEE
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD-------HSPAV---RQQLNAPF----FAD---LNDLCELHPDVV   92 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~-------~~~~~---a~~~g~~~----~~~---~~~~~~~~aDvV   92 (335)
                      +++|.|+| .|.+|+.++..|.+.|++|++.+|++       +..+.   ....|+..    ..+   +.+++ +++|+|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~-~~~d~v   80 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAI-KQVDIV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHH-TTCSEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHH-hCCCEE
Confidence            57899999 59999999999999999999999986       22211   12345532    122   23445 689999


Q ss_pred             EEecCc
Q 044593           93 LLSTSI   98 (335)
Q Consensus        93 Ilavp~   98 (335)
                      |.+...
T Consensus        81 i~~a~~   86 (307)
T 2gas_A           81 ICAAGR   86 (307)
T ss_dssp             EECSSS
T ss_pred             EECCcc
Confidence            998874

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.62  E-value=0.0032  Score=62.06  Aligned_cols=64  Identities=20%  Similarity=0.251  Sum_probs=49.8

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHHcCCeEEEEcCCCCc-HHHHHhCCCceec--ChhhHhhcCCCEEEEe
Q 044593           30 TSLKIAVIGFGNFGQF-LAKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFFA--DLNDLCELHPDVVLLS   95 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~s-iA~~L~~~G~~V~~~dr~~~~-~~~a~~~g~~~~~--~~~~~~~~~aDvVIla   95 (335)
                      ..++|.|||.|..|.+ +|+.|.+.|++|+++|.++.. .+..++.|+.+..  +.+. + .++|+||++
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~-~-~~~d~vV~S   88 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPEN-V-LDASVVVVS   88 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGG-G-TTCSEEEEC
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHH-c-CCCCEEEEC
Confidence            4689999999999996 899999999999999987653 3446677886532  3333 3 679999986

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.61  E-value=0.0021  Score=64.33  Aligned_cols=91  Identities=15%  Similarity=0.100  Sum_probs=61.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc-eecC---hhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP-FFAD---LNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~-~~~~---~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ++|.|+|+|.+|..+|+.|.+.|++|+++|.|++..+.+. .-+. ..++   +.++-.+++|.+|++++.+...-.+..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~-~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~  427 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH-VVVYGDATVGQTLRQAGIDRASGIIVTTNDDSTNIFLTL  427 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS-CEEESCSSSSTHHHHHTTTSCSEEEECCSCHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC-CEEEeCCCCHHHHHhcCccccCEEEEECCCchHHHHHHH
Confidence            8999999999999999999999999999999998654322 1000 1122   222212789999999998864433333


Q ss_pred             ccccccCCc-cEEEEcCC
Q 044593          108 IPFQRLKRS-TLFVDVLS  124 (335)
Q Consensus       108 l~~~~l~~~-~iVvd~~S  124 (335)
                      +. ..+.+. .+|+-+.+
T Consensus       428 ~a-k~l~~~~~iiar~~~  444 (565)
T 4gx0_A          428 AC-RHLHSHIRIVARANG  444 (565)
T ss_dssp             HH-HHHCSSSEEEEEESS
T ss_pred             HH-HHHCCCCEEEEEECC
Confidence            32 234454 45555543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.61  E-value=0.0057  Score=57.64  Aligned_cols=90  Identities=17%  Similarity=0.162  Sum_probs=65.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-hCCCcee---cChh---hHhhcCCCEEEEecCch-hH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-QLNAPFF---ADLN---DLCELHPDVVLLSTSIL-ST  101 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-~~g~~~~---~~~~---~~~~~~aDvVIlavp~~-~~  101 (335)
                      .+.+|.|+|+|.+|...+..++..|.+|++++++++..+.+. ++|....   .+.+   ++. ..+|+||-++... .+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~-~~~D~vid~~g~~~~~  265 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAA-GTLDGIIDTVSAVHPL  265 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTT-TCEEEEEECCSSCCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhh-CCCCEEEECCCcHHHH
Confidence            567999999999999999999999999999999988877666 7786422   2222   222 4689999998765 35


Q ss_pred             HHHHhhccccccCCccEEEEcCCC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ...++.+     +++..++.+++.
T Consensus       266 ~~~~~~l-----~~~G~iv~~g~~  284 (366)
T 1yqd_A          266 LPLFGLL-----KSHGKLILVGAP  284 (366)
T ss_dssp             HHHHHHE-----EEEEEEEECCCC
T ss_pred             HHHHHHH-----hcCCEEEEEccC
Confidence            5555444     345566777643

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.59  E-value=0.0047  Score=55.94  Aligned_cols=67  Identities=16%  Similarity=0.122  Sum_probs=49.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHcC-CeEEEEcCCCCcHH--HHHhCCCce----ecC---hhhHhhcCCCEEEEecCc
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARHH-HTLLVHSRSDHSPA--VRQQLNAPF----FAD---LNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~G-~~V~~~dr~~~~~~--~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp~   98 (335)
                      +|+|.|.|. |.+|+.++..|.+.| ++|.+.+|++....  .....++..    ..+   +.+++ +++|+||.+...
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~-~~~d~vi~~a~~   82 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELAL-NGAYATFIVTNY   82 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHH-TTCSEEEECCCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHH-hcCCEEEEeCCC
Confidence            578999995 999999999999998 99999999986532  223345532    223   23445 689999998763

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.59  E-value=0.0041  Score=58.40  Aligned_cols=92  Identities=16%  Similarity=0.184  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec------ChhhHhhcCCCEEEEecCc---h
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA------DLNDLCELHPDVVLLSTSI---L   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~------~~~~~~~~~aDvVIlavp~---~   99 (335)
                      ..+.+|.|+|+|.+|...+..++..|.+|++++++++..+.++++|....-      +..+.+...+|+||-|+..   .
T Consensus       178 ~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~  257 (360)
T 1piw_A          178 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI  257 (360)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHH
Confidence            356899999999999999999999999999999999888888888875321      2212111368999999886   3


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .....++     .++++..++.++..
T Consensus       258 ~~~~~~~-----~l~~~G~iv~~g~~  278 (360)
T 1piw_A          258 DFNIMPK-----AMKVGGRIVSISIP  278 (360)
T ss_dssp             CTTTGGG-----GEEEEEEEEECCCC
T ss_pred             HHHHHHH-----HhcCCCEEEEecCC
Confidence            3333332     35566677777643

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.57  E-value=0.0023  Score=56.02  Aligned_cols=70  Identities=14%  Similarity=0.116  Sum_probs=49.4

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhCCCc-------eecChhhHhhcCCCEEEEecCc
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLNAP-------FFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~g~~-------~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      +++|+|.|.| .|.+|..++..|.+.|+  +|++++|+++........++.       ...+..+++ +++|+||.+...
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-~~~d~vi~~ag~   94 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAF-QGHDVGFCCLGT   94 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGG-SSCSEEEECCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHh-cCCCEEEECCCc
Confidence            4568999999 69999999999999999  999999987543211111221       112233444 689999998764


Q ss_pred             h
Q 044593           99 L   99 (335)
Q Consensus        99 ~   99 (335)
                      .
T Consensus        95 ~   95 (242)
T 2bka_A           95 T   95 (242)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.56  E-value=0.0027  Score=58.17  Aligned_cols=78  Identities=18%  Similarity=0.313  Sum_probs=52.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC-C-----cHHH---HHhCCCce----ecC---hhhHhhcCCCEE
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD-H-----SPAV---RQQLNAPF----FAD---LNDLCELHPDVV   92 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~-~-----~~~~---a~~~g~~~----~~~---~~~~~~~~aDvV   92 (335)
                      ++|+|.|+| .|.+|+.++..|.+.|++|++.+|++ .     ..+.   ....++..    ..+   +.+++ +++|+|
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~-~~~d~v   81 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVL-KQVDIV   81 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHH-TTCSEE
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHH-cCCCEE
Confidence            467899999 59999999999999999999999986 2     1111   12345532    222   33445 689999


Q ss_pred             EEecCch---hHHHHHhhc
Q 044593           93 LLSTSIL---STQSVLKSI  108 (335)
Q Consensus        93 Ilavp~~---~~~~vl~~l  108 (335)
                      |.++...   ....+++..
T Consensus        82 i~~a~~~~~~~~~~l~~aa  100 (321)
T 3c1o_A           82 ISALPFPMISSQIHIINAI  100 (321)
T ss_dssp             EECCCGGGSGGGHHHHHHH
T ss_pred             EECCCccchhhHHHHHHHH
Confidence            9987643   234444443

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.55  E-value=0.0038  Score=57.12  Aligned_cols=67  Identities=25%  Similarity=0.362  Sum_probs=49.1

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC-cHHH---HHhCCCce----ecC---hhhHhhcCCCEEEEecCch
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH-SPAV---RQQLNAPF----FAD---LNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~-~~~~---a~~~g~~~----~~~---~~~~~~~~aDvVIlavp~~   99 (335)
                      ++|.|+| .|.+|+.++..|.+.|++|++.+|++. ..+.   ....|+..    ..+   +..++ +++|+||.+++..
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~-~~~d~vi~~a~~~   90 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELM-KKVDVVISALAFP   90 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHH-TTCSEEEECCCGG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHH-cCCCEEEECCchh
Confidence            5899999 599999999999999999999999874 3321   12345542    122   33445 6899999988743

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.54  E-value=0.0023  Score=58.21  Aligned_cols=67  Identities=24%  Similarity=0.283  Sum_probs=48.3

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc-----HHH---HHhCCCce----ecC---hhhHhhcCCCEEEE
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS-----PAV---RQQLNAPF----FAD---LNDLCELHPDVVLL   94 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~-----~~~---a~~~g~~~----~~~---~~~~~~~~aDvVIl   94 (335)
                      +|+|.|+| .|.+|+.++..|.+.|++|++.+|++..     .+.   ....++..    ..+   +.+++ +++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~-~~~d~vi~   82 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDAL-KQVDVVIS   82 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHH-TTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHH-hCCCEEEE
Confidence            67899999 5999999999999999999999998532     111   12345432    223   33445 68999999


Q ss_pred             ecCc
Q 044593           95 STSI   98 (335)
Q Consensus        95 avp~   98 (335)
                      ++..
T Consensus        83 ~a~~   86 (313)
T 1qyd_A           83 ALAG   86 (313)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8764

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=96.54  E-value=0.002  Score=61.04  Aligned_cols=54  Identities=17%  Similarity=0.218  Sum_probs=34.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcC----CeE-EEEcCCCCcHHHHHhC-CCceecChhhHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHH----HTL-LVHSRSDHSPAVRQQL-NAPFFADLNDLC   85 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G----~~V-~~~dr~~~~~~~a~~~-g~~~~~~~~~~~   85 (335)
                      +++||+|||+|.||+.++..+.+..    .+| .++|++...  .+.+. |+..+++..+++
T Consensus         3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~--~~~~~~gi~~~~~~~e~l   62 (358)
T 1ebf_A            3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSL--ISKDFSPLNVGSDWKAAL   62 (358)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEE--ECSSCSCCSCTTCHHHHH
T ss_pred             ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhh--hccccCCCCccccHHHHH
Confidence            4579999999999999999998863    455 445654321  11222 554434555544

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.54  E-value=0.014  Score=54.99  Aligned_cols=90  Identities=12%  Similarity=0.060  Sum_probs=62.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec-------ChhhHhh----cCCCEEEEecC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA-------DLNDLCE----LHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~-------~~~~~~~----~~aDvVIlavp   97 (335)
                      .+.+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|+...-       +..+.+.    ..+|+||-|+.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            46799999999999999999998998 899999999888888888875221       1222110    15788888887


Q ss_pred             ch-hHHHHHhhccccccCCc-cEEEEcCC
Q 044593           98 IL-STQSVLKSIPFQRLKRS-TLFVDVLS  124 (335)
Q Consensus        98 ~~-~~~~vl~~l~~~~l~~~-~iVvd~~S  124 (335)
                      .. .+...++.     ++++ ..++.++.
T Consensus       270 ~~~~~~~~~~~-----l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NVKVMRAALEA-----CHKGWGVSVVVGV  293 (373)
T ss_dssp             CHHHHHHHHHT-----BCTTTCEEEECSC
T ss_pred             cHHHHHHHHHh-----hccCCcEEEEEec
Confidence            53 33444433     3455 55666553

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=96.52  E-value=0.0095  Score=54.71  Aligned_cols=76  Identities=16%  Similarity=0.205  Sum_probs=59.6

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..++++.||| ...+|.-+|..|.+.+..|+++....              .++.+.+ ++||+||.|+.-...      
T Consensus       177 l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T--------------~dl~~~~-~~ADIvV~A~G~p~~------  235 (303)
T 4b4u_A          177 IAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT--------------QNLPELV-KQADIIVGAVGKAEL------  235 (303)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHH-HTCSEEEECSCSTTC------
T ss_pred             CCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC--------------CCHHHHh-hcCCeEEeccCCCCc------
Confidence            4678999999 67889999999999999999886543              2445566 799999999875432      


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                      +....+++|++|+|++..
T Consensus       236 i~~d~vk~GavVIDVGin  253 (303)
T 4b4u_A          236 IQKDWIKQGAVVVDAGFH  253 (303)
T ss_dssp             BCGGGSCTTCEEEECCCB
T ss_pred             cccccccCCCEEEEecee
Confidence            223568999999999753

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.52  E-value=0.0061  Score=55.68  Aligned_cols=88  Identities=16%  Similarity=0.050  Sum_probs=62.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecCh---h---hHhhcCCCEEEEecCchhHH
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADL---N---DLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~---~---~~~~~~aDvVIlavp~~~~~  102 (335)
                      .+.+|.|+|+ |.+|...+..++..|.+|++.+++++..+.++++|....-+.   .   +.+ ..+|+||- +......
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~-~~~d~vid-~g~~~~~  202 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAW-GGLDLVLE-VRGKEVE  202 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHT-TSEEEEEE-CSCTTHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHh-cCceEEEE-CCHHHHH
Confidence            5679999997 999999999999999999999999888777888887532111   1   222 46899998 7765555


Q ss_pred             HHHhhccccccCCccEEEEcCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..++.+     +++..++.++.
T Consensus       203 ~~~~~l-----~~~G~~v~~g~  219 (302)
T 1iz0_A          203 ESLGLL-----AHGGRLVYIGA  219 (302)
T ss_dssp             HHHTTE-----EEEEEEEEC--
T ss_pred             HHHHhh-----ccCCEEEEEeC
Confidence            544433     34556666654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.52  E-value=0.0092  Score=55.90  Aligned_cols=91  Identities=15%  Similarity=0.152  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCcee-c-C---hhhHh----h---cCCCEEEEe
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFF-A-D---LNDLC----E---LHPDVVLLS   95 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~-~-~---~~~~~----~---~~aDvVIla   95 (335)
                      ..+.+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|.... + +   ..+..    .   ..+|+||-+
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~  249 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  249 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEEC
Confidence            356899999999999999999998998 89999999888888888887521 1 1   11111    0   258999999


Q ss_pred             cCchh-HHHHHhhccccccCCccEEEEcCC
Q 044593           96 TSILS-TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        96 vp~~~-~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +.... +...++.     ++++..++.++.
T Consensus       250 ~g~~~~~~~~~~~-----l~~~G~iv~~G~  274 (356)
T 1pl8_A          250 TGAEASIQAGIYA-----TRSGGTLVLVGL  274 (356)
T ss_dssp             SCCHHHHHHHHHH-----SCTTCEEEECSC
T ss_pred             CCChHHHHHHHHH-----hcCCCEEEEEec
Confidence            87653 3444443     345556666653

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.51  E-value=0.0058  Score=60.67  Aligned_cols=65  Identities=17%  Similarity=0.092  Sum_probs=49.5

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHHcCCeEEEEcCCCC--cHHHHHhCCCceec--ChhhHhhcCCCEEEEe
Q 044593           30 TSLKIAVIGFGNFGQF-LAKAFARHHHTLLVHSRSDH--SPAVRQQLNAPFFA--DLNDLCELHPDVVLLS   95 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~s-iA~~L~~~G~~V~~~dr~~~--~~~~a~~~g~~~~~--~~~~~~~~~aDvVIla   95 (335)
                      +.++|.|||.|..|.+ +|+.|.+.|++|+++|.++.  ..+..++.|+.+..  +...+. .++|+||++
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~-~~~d~vV~S   87 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQ-PAPDLVVVG   87 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGC-SCCSEEEEC
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcC-CCCCEEEEC
Confidence            3689999999999997 79999999999999998753  34456677886542  334443 579999985

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.50  E-value=0.0028  Score=59.59  Aligned_cols=35  Identities=26%  Similarity=0.439  Sum_probs=32.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .|||.|||.|..|.++|..|+++|++|+++++++.
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            37999999999999999999999999999998753

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.49  E-value=0.0048  Score=56.62  Aligned_cols=38  Identities=16%  Similarity=0.176  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      +++|+|.|.|. |.+|+.++..|.+.|++|++++|++..
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   47 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK   47 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            46789999995 999999999999999999999998654

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.49  E-value=0.006  Score=56.87  Aligned_cols=90  Identities=16%  Similarity=0.202  Sum_probs=63.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHhCCCceecChh-------hHhh-cCCCEEEEecCch
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQLNAPFFADLN-------DLCE-LHPDVVLLSTSIL   99 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~~~g~~~~~~~~-------~~~~-~~aDvVIlavp~~   99 (335)
                      .+.+|.|+|+|.+|...+..++..  |.+|++.+++++..+.++++|....-+..       ++.. ..+|+||-|+...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            578999999999999999999988  99999999998888888888875322211       1110 1579999888765


Q ss_pred             -hHHHHHhhccccccCCccEEEEcCC
Q 044593          100 -STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 -~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                       .+...++.+     +++..++.++.
T Consensus       250 ~~~~~~~~~l-----~~~G~iv~~g~  270 (344)
T 2h6e_A          250 ETTYNLGKLL-----AQEGAIILVGM  270 (344)
T ss_dssp             HHHHHHHHHE-----EEEEEEEECCC
T ss_pred             HHHHHHHHHh-----hcCCEEEEeCC
Confidence             344444433     34555666653

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.48  E-value=0.0027  Score=59.69  Aligned_cols=88  Identities=15%  Similarity=0.185  Sum_probs=57.4

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCC---eEEEEc-CCCCcHHHHHhCCC--cee-cChhhHhhcCCCEEEEecCchhHH
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHH---TLLVHS-RSDHSPAVRQQLNA--PFF-ADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~d-r~~~~~~~a~~~g~--~~~-~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      ++||+||| .|..|.-+.+.|.++.|   ++..+. ++..-.... -.|.  ... .+..+ . .++|+||+|+|.....
T Consensus         1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~-~~~~~~~~~~~~~~~-~-~~~Dvvf~a~~~~~s~   77 (344)
T 3tz6_A            1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA-FRGQEIEVEDAETAD-P-SGLDIALFSAGSAMSK   77 (344)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE-ETTEEEEEEETTTSC-C-TTCSEEEECSCHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee-ecCCceEEEeCCHHH-h-ccCCEEEECCChHHHH
Confidence            36899999 79999999999998754   454443 222111100 1111  111 12222 3 6899999999998888


Q ss_pred             HHHhhccccccCCccEEEEcCCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      +....+    ++.|+.|+|.++-
T Consensus        78 ~~a~~~----~~~G~~vID~Sa~   96 (344)
T 3tz6_A           78 VQAPRF----AAAGVTVIDNSSA   96 (344)
T ss_dssp             HHHHHH----HHTTCEEEECSST
T ss_pred             HHHHHH----HhCCCEEEECCCc
Confidence            777765    3468899999874

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.48  E-value=0.0064  Score=57.24  Aligned_cols=89  Identities=17%  Similarity=0.188  Sum_probs=62.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC---CcHHHHHhCCCceec--Ch-hhHh--hcCCCEEEEecCchh-H
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD---HSPAVRQQLNAPFFA--DL-NDLC--ELHPDVVLLSTSILS-T  101 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~---~~~~~a~~~g~~~~~--~~-~~~~--~~~aDvVIlavp~~~-~  101 (335)
                      +.+|.|+|+|.+|...+..++..|.+|++.++++   +..+.++++|+...+  +. +++.  ...+|+||-++.... +
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  260 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVNI  260 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHHH
Confidence            7899999999999999999999999999999998   777777777765331  11 1111  025899999887653 3


Q ss_pred             -HHHHhhccccccCCccEEEEcCC
Q 044593          102 -QSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       102 -~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                       ...++.     ++++..++.++.
T Consensus       261 ~~~~~~~-----l~~~G~iv~~g~  279 (366)
T 2cdc_A          261 LGNVIPL-----LGRNGVLGLFGF  279 (366)
T ss_dssp             HHHHGGG-----EEEEEEEEECSC
T ss_pred             HHHHHHH-----HhcCCEEEEEec
Confidence             444433     345556666654

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.47  E-value=0.0038  Score=58.85  Aligned_cols=68  Identities=16%  Similarity=0.220  Sum_probs=48.4

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecC
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp   97 (335)
                      .++|+|.|.|. |.+|..++..|.+.|++|++++|++.........++..    ..+   ..+++ +++|+||.+..
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~-~~~d~Vih~A~  102 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVT-EGVDHVFNLAA  102 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHH-TTCSEEEECCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHh-CCCCEEEECce
Confidence            35789999995 99999999999999999999999875432112223321    122   23445 68999998764

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.46  E-value=0.0036  Score=54.77  Aligned_cols=67  Identities=21%  Similarity=0.171  Sum_probs=47.9

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp   97 (335)
                      +++++|.|.| .|.+|..+++.|.+.  |++|++.+|++...+.. ..++..    .++   ..+++ +++|+||.+..
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~-~~~d~vi~~a~   78 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAF-QGIDALVILTS   78 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHH-TTCSEEEECCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHH-cCCCEEEEecc
Confidence            3578999999 699999999999999  89999999986543311 223321    122   33445 68999998764

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=96.46  E-value=0.014  Score=56.64  Aligned_cols=113  Identities=11%  Similarity=0.090  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC---eEEEEc----CC----CC-c---HH-----HHHhCCCc-eecChhhHhhc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH---TLLVHS----RS----DH-S---PA-----VRQQLNAP-FFADLNDLCEL   87 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~---~V~~~d----r~----~~-~---~~-----~a~~~g~~-~~~~~~~~~~~   87 (335)
                      ....||.|+|+|..|.+++..|.+.|.   +|+++|    |+    .. .   ..     .+...+.. ...++.+.+ .
T Consensus       184 l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l-~  262 (439)
T 2dvm_A          184 ISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEAL-K  262 (439)
T ss_dssp             TTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHH-T
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHh-c
Confidence            356799999999999999999999998   799999    87    32 2   11     01111111 134566666 7


Q ss_pred             CCCEEEEecCc--hhH-HHHHhhccccccCCccEEEEcCCCC-chHHHHHHhhCCCCCceE-eccccC
Q 044593           88 HPDVVLLSTSI--LST-QSVLKSIPFQRLKRSTLFVDVLSVK-EFPRNLFLKYLPQDFDIL-CTHPMF  150 (335)
Q Consensus        88 ~aDvVIlavp~--~~~-~~vl~~l~~~~l~~~~iVvd~~SvK-~~~~~~l~~~l~~~~~~v-~~HPma  150 (335)
                      ++|++|-++|.  ... .+.++.     +.++.+|+|++.-. +...+..++.   +..++ .+-.|.
T Consensus       263 ~aDVlInaT~~~~G~~~~e~v~~-----m~~~~iVfDLynP~~t~~~~~A~~~---G~~ivatG~~ml  322 (439)
T 2dvm_A          263 DADVLISFTRPGPGVIKPQWIEK-----MNEDAIVFPLANPVPEILPEEAKKA---GARIVATGRSDY  322 (439)
T ss_dssp             TCSEEEECSCCCSSSSCHHHHTT-----SCTTCEEEECCSSSCSSCHHHHHHH---TCSEECBSCSSS
T ss_pred             cCCEEEEcCCCccCCCChHHHHh-----cCCCCEEEECCCCCCcchHHHHHHc---CCeEEcCCCchh
Confidence            89999999998  443 333332     45778999994221 2344444443   33455 444554

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.45  E-value=0.0021  Score=58.41  Aligned_cols=58  Identities=16%  Similarity=0.089  Sum_probs=42.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEec
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      |||.|.|. |.||+.++..|.+.||+|++..|++....      +.......+.+ .++|.||-+.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~------~~~~~~~~~~l-~~~d~vihla   59 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR------ITWDELAASGL-PSCDAAVNLA   59 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE------EEHHHHHHHCC-CSCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe------eecchhhHhhc-cCCCEEEEec
Confidence            89999995 99999999999999999999999875321      10000011223 6889998654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.45  E-value=0.0051  Score=56.91  Aligned_cols=68  Identities=13%  Similarity=0.100  Sum_probs=48.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH-H---HHHh-------CCCce----ecC---hhhHhhcCC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP-A---VRQQ-------LNAPF----FAD---LNDLCELHP   89 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~---~a~~-------~g~~~----~~~---~~~~~~~~a   89 (335)
                      +++|+|.|.| .|.+|+.++..|.+.|++|++++|++... .   ....       .++..    ..+   ..+++ +++
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~  101 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM-KGV  101 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT-TTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh-cCC
Confidence            4678999999 69999999999999999999999976432 1   1111       23321    122   23444 689


Q ss_pred             CEEEEecC
Q 044593           90 DVVLLSTS   97 (335)
Q Consensus        90 DvVIlavp   97 (335)
                      |+||-+..
T Consensus       102 d~Vih~A~  109 (351)
T 3ruf_A          102 DHVLHQAA  109 (351)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCc
Confidence            99998765

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.45  E-value=0.0092  Score=56.99  Aligned_cols=95  Identities=12%  Similarity=0.113  Sum_probs=65.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec-----ChhhHhh-----cCCCEEEEecC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA-----DLNDLCE-----LHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~-----~~~~~~~-----~~aDvVIlavp   97 (335)
                      ..+.+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|....-     +..+.+.     ..+|+||-|+.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g  291 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATG  291 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCC
Confidence            356899999999999999999999999 899999999888888888875321     2211110     25899999988


Q ss_pred             ch--hHHHHHhhccccccCCccEEEEcCC
Q 044593           98 IL--STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~--~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..  .....++.+. ..++++..++.++.
T Consensus       292 ~~~~~~~~~~~~l~-~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          292 VPQLVWPQIEEVIW-RARGINATVAIVAR  319 (404)
T ss_dssp             CHHHHHHHHHHHHH-HCSCCCCEEEECSC
T ss_pred             CcHHHHHHHHHHHH-hccCCCcEEEEeCC
Confidence            76  2333333330 11256667776654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.44  E-value=0.0069  Score=56.30  Aligned_cols=92  Identities=11%  Similarity=0.049  Sum_probs=64.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec-----ChhhHhh---cCCCEEEEecCchh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA-----DLNDLCE---LHPDVVLLSTSILS  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~-----~~~~~~~---~~aDvVIlavp~~~  100 (335)
                      ..+.+|.|+|+|.+|...+..++..|.+|++.+++++..+.++++|....-     +..+.+.   ...|+||.++....
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~  244 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPK  244 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHH
Confidence            356899999999999999999999999999999999888888988875321     2222110   26788888876443


Q ss_pred             -HHHHHhhccccccCCccEEEEcCCC
Q 044593          101 -TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 -~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                       +...++.     ++++..++.++..
T Consensus       245 ~~~~~~~~-----l~~~G~iv~~G~~  265 (340)
T 3s2e_A          245 AFSQAIGM-----VRRGGTIALNGLP  265 (340)
T ss_dssp             HHHHHHHH-----EEEEEEEEECSCC
T ss_pred             HHHHHHHH-----hccCCEEEEeCCC
Confidence             3344433     3455666666543

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.42  E-value=0.0037  Score=56.94  Aligned_cols=36  Identities=19%  Similarity=0.108  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      .++++|.|||.|.+|.+-+..|.+.|++|++++++.
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            468899999999999999999999999999998764

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.017  Score=53.89  Aligned_cols=92  Identities=11%  Similarity=0.048  Sum_probs=63.8

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee------cChhhHhh----cCCCEEEEecC
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF------ADLNDLCE----LHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~------~~~~~~~~----~~aDvVIlavp   97 (335)
                      ..+.+|.|+|+ |.+|..++..++..|.+|++.+++++..+.+++.|....      .+..+.+.    ...|+||-++.
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g  247 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSV  247 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCC
Confidence            35678999998 999999999999999999999999888777888776421      12222220    15799998887


Q ss_pred             ch-hHHHHHhhccccccCCccEEEEcCCC
Q 044593           98 IL-STQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        98 ~~-~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .. .+...++     .++++..++.+++.
T Consensus       248 ~~~~~~~~~~-----~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          248 SEAAIEASTR-----YVRANGTTVLVGMP  271 (347)
T ss_dssp             CHHHHHHHTT-----SEEEEEEEEECCCC
T ss_pred             cHHHHHHHHH-----HHhcCCEEEEEeCC
Confidence            53 2333333     34455667777653

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.39  E-value=0.0051  Score=58.56  Aligned_cols=90  Identities=14%  Similarity=0.200  Sum_probs=57.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHH-HHHHcCC---eEEEE-cCCCC-cHHHHHhCCCcee--cChhhHhhcCCCEEEEecCchh
Q 044593           30 TSLKIAVIG-FGNFGQFLAK-AFARHHH---TLLVH-SRSDH-SPAVRQQLNAPFF--ADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~-~L~~~G~---~V~~~-dr~~~-~~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ..+||+||| .|..|.-+.+ .|.++.+   ++..+ .++.. .............  .+.+++  .++|+||+|+|...
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~v~~~~~~~~~--~~vDvvf~a~~~~~   80 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTLKDATSIDDL--KKCDVIITCQGGDY   80 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSBCCTTCCSCCBCEETTCHHHH--HTCSEEEECSCHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCCHHHcCCCceEEEeCCChhHh--cCCCEEEECCChHH
Confidence            458999999 6999999999 7777653   55544 33221 1111111111221  233343  68999999999988


Q ss_pred             HHHHHhhccccccCCcc--EEEEcCCC
Q 044593          101 TQSVLKSIPFQRLKRST--LFVDVLSV  125 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~--iVvd~~Sv  125 (335)
                      ..++...+    ++.|+  +|+|.++-
T Consensus        81 s~~~~~~~----~~~G~k~~VID~ss~  103 (377)
T 3uw3_A           81 TNDVFPKL----RAAGWNGYWIDAASS  103 (377)
T ss_dssp             HHHHHHHH----HHTTCCSEEEECSST
T ss_pred             HHHHHHHH----HHCCCCEEEEeCCcc
Confidence            88877765    23554  89999863

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.37  E-value=0.005  Score=56.90  Aligned_cols=64  Identities=20%  Similarity=0.131  Sum_probs=44.6

Q ss_pred             cCCCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-------ecChhhHhhcCCCEEEEecC
Q 044593           27 VKSTSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-------FADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        27 ~~~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-------~~~~~~~~~~~aDvVIlavp   97 (335)
                      .+.++|+|.|.|. |.+|+.++..|.+.|++|++++|++..      .++..       ..+..+++ .++|+||-+..
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~Dl~d~~~~~~~~-~~~d~vih~A~   86 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------TGGEEVVGSLEDGQALSDAI-MGVSAVLHLGA   86 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------SCCSEEESCTTCHHHHHHHH-TTCSEEEECCC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------CCccEEecCcCCHHHHHHHH-hCCCEEEECCc
Confidence            3456789999995 999999999999999999999998754      22221       12233445 68999998754

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=96.37  E-value=0.0036  Score=58.14  Aligned_cols=65  Identities=20%  Similarity=0.147  Sum_probs=45.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCCC--cHH-HH---HhCC------CceecChhhHhhcCCC
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSDH--SPA-VR---QQLN------APFFADLNDLCELHPD   90 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~~--~~~-~a---~~~g------~~~~~~~~~~~~~~aD   90 (335)
                      .|||.|+|. |.+|+.++..|...|+       +|+++|+++.  ..+ .+   ....      +....+..+.+ +++|
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~-~~~D   82 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAF-KDAD   82 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT-TTCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHh-CCCC
Confidence            479999996 9999999999999886       8999998752  111 11   1111      11224555666 7899


Q ss_pred             EEEEec
Q 044593           91 VVLLST   96 (335)
Q Consensus        91 vVIlav   96 (335)
                      +||.+.
T Consensus        83 ~Vih~A   88 (327)
T 1y7t_A           83 YALLVG   88 (327)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999864

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=96.37  E-value=0.0049  Score=58.51  Aligned_cols=88  Identities=14%  Similarity=0.200  Sum_probs=56.4

Q ss_pred             CeEEEEc-ccHHHHHHHH-HHHHcCC---eEEEE-cCCCC-cHHHHHhCCCcee--cChhhHhhcCCCEEEEecCchhHH
Q 044593           32 LKIAVIG-FGNFGQFLAK-AFARHHH---TLLVH-SRSDH-SPAVRQQLNAPFF--ADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~-~L~~~G~---~V~~~-dr~~~-~~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      |||+||| .|..|+-+.+ .|.++.+   ++..+ .++.. .............  .+.+++  .++|+||+|+|.....
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~~~~~~~~~~~--~~~Dvvf~a~~~~~s~   78 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESL--KQLDAVITCQGGSYTE   78 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCCSSSCCCBCEETTCHHHH--TTCSEEEECSCHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcCHHHhCCCceEEEecCChhHh--ccCCEEEECCChHHHH
Confidence            6899999 6999999998 7777653   55544 33321 1110111111221  233343  6899999999998888


Q ss_pred             HHHhhccccccCCc--cEEEEcCCC
Q 044593          103 SVLKSIPFQRLKRS--TLFVDVLSV  125 (335)
Q Consensus       103 ~vl~~l~~~~l~~~--~iVvd~~Sv  125 (335)
                      ++...+    ++.|  ++|+|.++-
T Consensus        79 ~~~~~~----~~~G~k~~VID~ss~   99 (370)
T 3pzr_A           79 KVYPAL----RQAGWKGYWIDAAST   99 (370)
T ss_dssp             HHHHHH----HHTTCCCEEEECSST
T ss_pred             HHHHHH----HHCCCCEEEEeCCch
Confidence            777765    2345  489999864

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.37  E-value=0.012  Score=55.07  Aligned_cols=91  Identities=14%  Similarity=0.084  Sum_probs=64.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---c---Ch-hhH---hh----cCCCEEEE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---A---DL-NDL---CE----LHPDVVLL   94 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~---~~-~~~---~~----~~aDvVIl   94 (335)
                      ..+.+|.|+|+|.+|...+..++..|.+|++.+++++..+.++++|....   .   +. +++   ..    ..+|+||-
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid  246 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  246 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEE
Confidence            35689999999999999999999999999999999888888888887421   1   11 111   10    25899999


Q ss_pred             ecCchh-HHHHHhhccccccCCccEEEEcCC
Q 044593           95 STSILS-TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        95 avp~~~-~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ++.... +...++.     ++++..++.++.
T Consensus       247 ~~g~~~~~~~~~~~-----l~~~G~iv~~G~  272 (352)
T 1e3j_A          247 CSGNEKCITIGINI-----TRTGGTLMLVGM  272 (352)
T ss_dssp             CSCCHHHHHHHHHH-----SCTTCEEEECSC
T ss_pred             CCCCHHHHHHHHHH-----HhcCCEEEEEec
Confidence            987653 3444443     345556666653

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.36  E-value=0.0064  Score=56.89  Aligned_cols=89  Identities=16%  Similarity=0.235  Sum_probs=55.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHHc---CCeEEEE-cCC-CCcHHHHHh----C-----------------C--Ccee--cCh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARH---HHTLLVH-SRS-DHSPAVRQQ----L-----------------N--APFF--ADL   81 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~---G~~V~~~-dr~-~~~~~~a~~----~-----------------g--~~~~--~~~   81 (335)
                      .||+|+|+|.+|..+.+.|.+.   .++|+.+ |+. ++......+    .                 |  +...  .++
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   80 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence            4899999999999999999876   3677644 432 111111110    0                 1  1111  144


Q ss_pred             hhHhhc--CCCEEEEecCchhHHHHHhhccccccCCcc--EEEEcCC
Q 044593           82 NDLCEL--HPDVVLLSTSILSTQSVLKSIPFQRLKRST--LFVDVLS  124 (335)
Q Consensus        82 ~~~~~~--~aDvVIlavp~~~~~~vl~~l~~~~l~~~~--iVvd~~S  124 (335)
                      +++.+.  ++|+||.|+|.....+....+    ++.|.  +|+|.++
T Consensus        81 ~~l~w~~~~vDvV~~atg~~~s~e~a~~~----l~aGakkvVId~~a  123 (332)
T 1hdg_O           81 SKLPWKDLGVDFVIESTGVFRNREKAELH----LQAGAKKVIITAPA  123 (332)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHH----HHTTCSEEEESSCC
T ss_pred             HHCcccccCCCEEEECCccchhHHHHHHH----HHcCCcEEEEeCCC
Confidence            443112  799999999988877766654    34555  8888765

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.35  E-value=0.0039  Score=56.76  Aligned_cols=69  Identities=16%  Similarity=0.136  Sum_probs=47.7

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHh----CCCc----eecC---hhhHhhcCCCEEEEe
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQ----LNAP----FFAD---LNDLCELHPDVVLLS   95 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~----~g~~----~~~~---~~~~~~~~aDvVIla   95 (335)
                      .+++++.|+| .|.+|.+++..|.+.|++|++++|+++..+ .+.+    .++.    ..++   ..+++ +++|+||-+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~DvlVn~  195 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV-KGAHFVFTA  195 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT-TTCSEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHH-HhCCEEEEC
Confidence            4568899999 999999999999999999999999865432 2221    1221    1122   23334 567888888


Q ss_pred             cCc
Q 044593           96 TSI   98 (335)
Q Consensus        96 vp~   98 (335)
                      ++.
T Consensus       196 ag~  198 (287)
T 1lu9_A          196 GAI  198 (287)
T ss_dssp             CCT
T ss_pred             CCc
Confidence            764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=96.34  E-value=0.0067  Score=55.87  Aligned_cols=91  Identities=12%  Similarity=0.069  Sum_probs=58.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC----CC---ce-ecChhhHhhcCCCEEEEecCchh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL----NA---PF-FADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~----g~---~~-~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ...++|..||+|..|.+.....+..|.+|+++|.+++..+.|++.    |.   .+ ..+..++....+|+|+++.-...
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~~d  200 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALAEP  200 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTCSC
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCccC
Confidence            467899999999865432222223588999999999877666543    43   11 22333332157899998765555


Q ss_pred             HHHHHhhccccccCCccEEE
Q 044593          101 TQSVLKSIPFQRLKRSTLFV  120 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVv  120 (335)
                      ...+++++. ..++||..++
T Consensus       201 ~~~~l~el~-r~LkPGG~Lv  219 (298)
T 3fpf_A          201 KRRVFRNIH-RYVDTETRII  219 (298)
T ss_dssp             HHHHHHHHH-HHCCTTCEEE
T ss_pred             HHHHHHHHH-HHcCCCcEEE
Confidence            567777774 5677776554

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.34  E-value=0.0097  Score=55.33  Aligned_cols=92  Identities=16%  Similarity=0.184  Sum_probs=66.9

Q ss_pred             CCCCeEEEEccc-HHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-----cChhhHhh-----cCCCEEEEecC
Q 044593           29 STSLKIAVIGFG-NFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLCE-----LHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~G-~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~~-----~~aDvVIlavp   97 (335)
                      ..+.+|.|+|+| .+|...+..++..|.+|++.+++++..+.++++|....     .+..+.+.     ...|+||-|+.
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g  222 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIG  222 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCC
Confidence            356899999986 99999999999999999999999998888888887521     12222110     26899999988


Q ss_pred             chhHHHHHhhccccccCCccEEEEcCCC
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .......+..     ++++..++.++..
T Consensus       223 ~~~~~~~~~~-----l~~~G~iv~~G~~  245 (340)
T 3gms_A          223 GPDGNELAFS-----LRPNGHFLTIGLL  245 (340)
T ss_dssp             HHHHHHHHHT-----EEEEEEEEECCCT
T ss_pred             ChhHHHHHHH-----hcCCCEEEEEeec
Confidence            7766555532     4566677777643

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.34  E-value=0.0083  Score=56.21  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=48.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH--HHHHhC-CCc----e-ecC---hhhHhhcCCCEEEEecC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP--AVRQQL-NAP----F-FAD---LNDLCELHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~--~~a~~~-g~~----~-~~~---~~~~~~~~aDvVIlavp   97 (335)
                      ..|+|.|.| .|.+|+.++..|.+.|++|++.+|++...  +...+. ++.    . .++   ..+++ +++|+||.+..
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~-~~~d~Vi~~a~   82 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLF-EGAHLAFINTT   82 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHH-TTCSEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHH-hcCCEEEEcCC
Confidence            367899999 69999999999999999999999988654  222221 332    1 223   23445 78999997764


Q ss_pred             c
Q 044593           98 I   98 (335)
Q Consensus        98 ~   98 (335)
                      .
T Consensus        83 ~   83 (352)
T 1xgk_A           83 S   83 (352)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.33  E-value=0.007  Score=55.69  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=33.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ++|+|.|.| .|.||..++..|.+.|++|++.+|++..
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   41 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNS   41 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            467999999 6999999999999999999999998654

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.32  E-value=0.0091  Score=56.37  Aligned_cols=91  Identities=14%  Similarity=0.158  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCcee-----cChhhHhhc-------CCCEEEEe
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLCEL-------HPDVVLLS   95 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~~~-------~aDvVIla   95 (335)
                      ..+.+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|+...     .+..+.+.+       .+|+||-|
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~  260 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIEC  260 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEEC
Confidence            357899999999999999999999998 89999999888888888887532     122222211       47999998


Q ss_pred             cCch-hHHHHHhhccccccCCccEEEEcCC
Q 044593           96 TSIL-STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        96 vp~~-~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +... .....++.+     +++..++.++.
T Consensus       261 ~G~~~~~~~~~~~l-----~~~G~vv~~G~  285 (370)
T 4ej6_A          261 AGVAETVKQSTRLA-----KAGGTVVILGV  285 (370)
T ss_dssp             SCCHHHHHHHHHHE-----EEEEEEEECSC
T ss_pred             CCCHHHHHHHHHHh-----ccCCEEEEEec
Confidence            8743 344444433     35556666653

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=96.31  E-value=0.0046  Score=57.92  Aligned_cols=90  Identities=16%  Similarity=0.186  Sum_probs=55.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC-CeEEEE-cCC-CCcHHHHHh----C-----------------C--Ccee--cChh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH-HTLLVH-SRS-DHSPAVRQQ----L-----------------N--APFF--ADLN   82 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~-dr~-~~~~~~a~~----~-----------------g--~~~~--~~~~   82 (335)
                      ++||+|+|+|.+|..+.+.|.+.. .+|+++ |+. ++......+    .                 |  +...  .++.
T Consensus         1 mikVgI~G~G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   80 (334)
T 3cmc_O            1 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE   80 (334)
T ss_dssp             CEEEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             CeEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCChh
Confidence            369999999999999999998763 466544 441 111111110    0                 1  1112  1344


Q ss_pred             hHhhc--CCCEEEEecCchhHHHHHhhccccccCCcc--EEEEcCC
Q 044593           83 DLCEL--HPDVVLLSTSILSTQSVLKSIPFQRLKRST--LFVDVLS  124 (335)
Q Consensus        83 ~~~~~--~aDvVIlavp~~~~~~vl~~l~~~~l~~~~--iVvd~~S  124 (335)
                      ++.+.  ++|+||.|+|.....+....+    ++.|+  +|+|.++
T Consensus        81 ~i~w~~~~vDvV~~atg~~~s~e~a~~~----l~~Gak~vVId~pa  122 (334)
T 3cmc_O           81 NLAWGEIGVDIVVESTGRFTKREDAAKH----LEAGAKKVIISAPA  122 (334)
T ss_dssp             GCCTGGGTCCEEEECSSSCCBHHHHTHH----HHTTCSEEEESSCC
T ss_pred             hcCcccCccCEEEECCCchhhHHHHHHH----HHCCCCEEEEeCCC
Confidence            33112  799999999988777766554    34555  8888754

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.29  E-value=0.0037  Score=57.66  Aligned_cols=70  Identities=20%  Similarity=0.261  Sum_probs=47.7

Q ss_pred             cCCCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHh-CCCc----eecC---hhhHhhc--CCCEEEE
Q 044593           27 VKSTSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQ-LNAP----FFAD---LNDLCEL--HPDVVLL   94 (335)
Q Consensus        27 ~~~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~-~g~~----~~~~---~~~~~~~--~aDvVIl   94 (335)
                      ...+.|+|.|.|. |.+|..++..|.+.|++|++++|++.... .... .++.    ...+   ..+++ +  ++|+||.
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~-~~~~~D~vih   94 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAF-DSFKPTHVVH   94 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHH-HHHCCSEEEE
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHH-hhcCCCEEEE
Confidence            3456789999995 99999999999999999999999754321 1111 1221    1122   23344 5  8999998


Q ss_pred             ecC
Q 044593           95 STS   97 (335)
Q Consensus        95 avp   97 (335)
                      +..
T Consensus        95 ~A~   97 (330)
T 2pzm_A           95 SAA   97 (330)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            764

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.29  E-value=0.0043  Score=53.20  Aligned_cols=34  Identities=29%  Similarity=0.383  Sum_probs=31.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ..|+|||+|.-|.+.|..|+++|++|+++|+++.
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~   36 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG   36 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4599999999999999999999999999998754

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=96.29  E-value=0.004  Score=58.47  Aligned_cols=89  Identities=15%  Similarity=0.224  Sum_probs=52.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC---CeEEEE-cCC-CCcHHHHHhC---------------------C--Cce--ecCh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH---HTLLVH-SRS-DHSPAVRQQL---------------------N--APF--FADL   81 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G---~~V~~~-dr~-~~~~~~a~~~---------------------g--~~~--~~~~   81 (335)
                      +||+|+|+|.+|..+.+.|.+.+   ++|+++ |+. ++......+.                     |  +..  ..++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp   82 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNP   82 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSCG
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCCh
Confidence            59999999999999999998862   566544 442 1221111110                     1  111  2244


Q ss_pred             hhHhh--cCCCEEEEecCchhHHHHHhhccccccCCcc--EEEEcCC
Q 044593           82 NDLCE--LHPDVVLLSTSILSTQSVLKSIPFQRLKRST--LFVDVLS  124 (335)
Q Consensus        82 ~~~~~--~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~--iVvd~~S  124 (335)
                      +++.+  .++|+||.|+|.....+.....    ++.|.  +|+|.++
T Consensus        83 ~~l~w~~~~vDvV~e~tg~~~s~e~a~~~----l~~GakkVVId~~~  125 (339)
T 3b1j_A           83 LNLPWKEWDIDLVIESTGVFVTAEGASKH----IQAGAKKVLITAPG  125 (339)
T ss_dssp             GGSCTTTTTCCEEEECSSSCCBHHHHHHH----HHTTCSEEEESSCC
T ss_pred             HHCcccccCCCEEEECCCccccHHHHHHH----HHcCCcEEEEeCCC
Confidence            44421  2789999999987766555543    22333  3666654

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.28  E-value=0.014  Score=53.98  Aligned_cols=91  Identities=13%  Similarity=0.022  Sum_probs=62.1

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee------cChhhHhh----cCCCEEEEecC
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF------ADLNDLCE----LHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~------~~~~~~~~----~~aDvVIlavp   97 (335)
                      ..+.+|.|+|+ |.+|..++..++..|++|++.+++++..+.+++.|....      .+..+.+.    ...|++|-++.
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  223 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  223 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            35678999997 999999999999999999999998877776777776421      12222210    24788888877


Q ss_pred             chhHHHHHhhccccccCCccEEEEcCC
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .......++     .++++..++.++.
T Consensus       224 ~~~~~~~~~-----~l~~~G~~v~~g~  245 (333)
T 1v3u_A          224 GEFLNTVLS-----QMKDFGKIAICGA  245 (333)
T ss_dssp             HHHHHHHHT-----TEEEEEEEEECCC
T ss_pred             hHHHHHHHH-----HHhcCCEEEEEec
Confidence            544333333     2445556666654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.25  E-value=0.0068  Score=56.01  Aligned_cols=92  Identities=16%  Similarity=0.014  Sum_probs=64.4

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-----cChhhHhh-----cCCCEEEEecC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLCE-----LHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~~-----~~aDvVIlavp   97 (335)
                      ..+.+|.|+| .|.+|...+..++..|.+|++.+++++..+.+++.|....     .+..+.+.     ...|+||-|+.
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g  218 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVG  218 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCC
Confidence            3568999999 7999999999999999999999999888887887776421     11111110     25788888887


Q ss_pred             chhHHHHHhhccccccCCccEEEEcCCC
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .......++.     ++++..++.++..
T Consensus       219 ~~~~~~~~~~-----l~~~G~iv~~g~~  241 (325)
T 3jyn_A          219 QDTWLTSLDS-----VAPRGLVVSFGNA  241 (325)
T ss_dssp             GGGHHHHHTT-----EEEEEEEEECCCT
T ss_pred             hHHHHHHHHH-----hcCCCEEEEEecC
Confidence            6555544443     3455666666543

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.25  E-value=0.0092  Score=55.31  Aligned_cols=92  Identities=14%  Similarity=0.179  Sum_probs=66.4

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-----cChhhHh-----hcCCCEEEEecC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLC-----ELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~-----~~~aDvVIlavp   97 (335)
                      ..+.+|.|+| .|.+|...+..++..|.+|++.+++++..+.+++.|....     .+..+.+     ....|+||-|+.
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g  226 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVG  226 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCC
Confidence            3568999999 8999999999999999999999999888888888887522     1111111     025899999888


Q ss_pred             chhHHHHHhhccccccCCccEEEEcCCC
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .......++.+     +++..++.++..
T Consensus       227 ~~~~~~~~~~l-----~~~G~iv~~G~~  249 (334)
T 3qwb_A          227 KDTFEISLAAL-----KRKGVFVSFGNA  249 (334)
T ss_dssp             GGGHHHHHHHE-----EEEEEEEECCCT
T ss_pred             hHHHHHHHHHh-----ccCCEEEEEcCC
Confidence            75555555443     456677777643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.25  E-value=0.0082  Score=56.13  Aligned_cols=91  Identities=15%  Similarity=0.140  Sum_probs=63.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec-----ChhhHhh-----cCCCEEEEecC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA-----DLNDLCE-----LHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~-----~~~~~~~-----~~aDvVIlavp   97 (335)
                      ..+.+|.|+|+|.+|...+..++..|. +|++.|++++..+.++++|....-     +..+.+.     ..+|+||-|+.
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g  244 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGG  244 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence            356889999999999999999998998 899999998888888888875321     1111110     24788888887


Q ss_pred             ch-hHHHHHhhccccccCCccEEEEcCC
Q 044593           98 IL-STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~-~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .. .....++.+     +++..++.++.
T Consensus       245 ~~~~~~~~~~~l-----~~~G~~v~~G~  267 (352)
T 3fpc_A          245 DVHTFAQAVKMI-----KPGSDIGNVNY  267 (352)
T ss_dssp             CTTHHHHHHHHE-----EEEEEEEECCC
T ss_pred             ChHHHHHHHHHH-----hcCCEEEEecc
Confidence            63 344444443     34556666653

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.24  E-value=0.0037  Score=56.07  Aligned_cols=66  Identities=14%  Similarity=0.254  Sum_probs=48.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecCc
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp~   98 (335)
                      |+|.|.|. |.+|+.++..|.+.  |++|++++|++.........++..    ..+   +.+++ +++|+||.+...
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~-~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAF-AGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHT-TTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHH-hcCCEEEEcCCC
Confidence            57999995 99999999999998  999999999876554333445432    122   23444 689999987653

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.24  E-value=0.012  Score=55.29  Aligned_cols=89  Identities=19%  Similarity=0.211  Sum_probs=64.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-hCCCcee---cChhh---HhhcCCCEEEEecCch-hH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-QLNAPFF---ADLND---LCELHPDVVLLSTSIL-ST  101 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-~~g~~~~---~~~~~---~~~~~aDvVIlavp~~-~~  101 (335)
                      .+.+|.|+|+|.+|...+..++..|.+|++++++++..+.+. ++|....   .+.+.   +. ..+|+||-|+... .+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~-~g~D~vid~~g~~~~~  258 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELA-DSLDYVIDTVPVHHAL  258 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHST-TTEEEEEECCCSCCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhc-CCCCEEEECCCChHHH
Confidence            567999999999999999999989999999999988877777 7786421   22221   12 3579999988754 34


Q ss_pred             HHHHhhccccccCCccEEEEcCC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...++.+     +++..++.++.
T Consensus       259 ~~~~~~l-----~~~G~iv~~G~  276 (357)
T 2cf5_A          259 EPYLSLL-----KLDGKLILMGV  276 (357)
T ss_dssp             HHHHTTE-----EEEEEEEECSC
T ss_pred             HHHHHHh-----ccCCEEEEeCC
Confidence            5555433     35556666654

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.24  E-value=0.0051  Score=56.03  Aligned_cols=65  Identities=17%  Similarity=0.261  Sum_probs=38.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhc--CCCEEEEecC
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp   97 (335)
                      +|+|.|.|. |.+|..++..|.+.|++|++.+|++.... .....+....+..+++ +  .+|+||.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~-~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHII-HDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHH-HHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHH-HhhCCCEEEECCc
Confidence            578999995 99999999999999999999998754311 1111111122334444 3  4899998764

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.23  E-value=0.01  Score=55.85  Aligned_cols=91  Identities=16%  Similarity=0.112  Sum_probs=62.5

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-----cChhhHhh----cCCCEEEEecCc
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLCE----LHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~~----~~aDvVIlavp~   98 (335)
                      ..+.+|.|+| .|.+|...+..++..|++|++.+++++..+.+++.|....     .+..+.+.    ..+|+||-|+..
T Consensus       162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~  241 (362)
T 2c0c_A          162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG  241 (362)
T ss_dssp             CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH
Confidence            3567999999 7999999999999999999999999887777888886422     12212110    247888888776


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ......++.+     +++..++.+++
T Consensus       242 ~~~~~~~~~l-----~~~G~iv~~g~  262 (362)
T 2c0c_A          242 AMFDLAVDAL-----ATKGRLIVIGF  262 (362)
T ss_dssp             HHHHHHHHHE-----EEEEEEEECCC
T ss_pred             HHHHHHHHHH-----hcCCEEEEEeC
Confidence            4444444433     34445565554

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.20  E-value=0.012  Score=54.73  Aligned_cols=91  Identities=9%  Similarity=0.073  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee----cChhhHhh-----cCCCEEEEecCc
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF----ADLNDLCE-----LHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~----~~~~~~~~-----~~aDvVIlavp~   98 (335)
                      ..+.+|.|+|+ |.+|...+..++..|.+|++.+++++..+.++++|....    .+..+.+.     ...|+||-|+..
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~  237 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGG  237 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC-
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCch
Confidence            35689999997 999999999999999999999999988888888776432    12211110     258888888876


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ......+..+     +++..++.++.
T Consensus       238 ~~~~~~~~~l-----~~~G~iv~~G~  258 (342)
T 4eye_A          238 PAFDDAVRTL-----ASEGRLLVVGF  258 (342)
T ss_dssp             -CHHHHHHTE-----EEEEEEEEC--
T ss_pred             hHHHHHHHhh-----cCCCEEEEEEc
Confidence            6555544433     45566666654

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=96.20  E-value=0.0068  Score=56.67  Aligned_cols=89  Identities=18%  Similarity=0.198  Sum_probs=55.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC-CeEEEE-cCCC-CcHHHHHhC--------C--------Cc-------ee--cChhh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH-HTLLVH-SRSD-HSPAVRQQL--------N--------AP-------FF--ADLND   83 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G-~~V~~~-dr~~-~~~~~a~~~--------g--------~~-------~~--~~~~~   83 (335)
                      +||||+|+|.+|..+.+.+.+.. .+|+++ |+.. +......+.        |        +.       ..  .++.+
T Consensus         2 ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~   81 (330)
T 1gad_O            2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (330)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCChhh
Confidence            58999999999999999998764 466544 4322 221111121        1        10       11  13333


Q ss_pred             Hhh--cCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCC
Q 044593           84 LCE--LHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        84 ~~~--~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +.+  .++|+||.|+|.....+....+    ++.|..++|+++
T Consensus        82 i~w~~~~vDvVf~atg~~~s~e~a~~~----l~~GakvVdlSa  120 (330)
T 1gad_O           82 LKWDEVGVDVVAEATGLFLTDETARKH----ITAGAKKVVMTG  120 (330)
T ss_dssp             GCHHHHTCSEEEECSSSCCSHHHHTHH----HHTTCSEEEESS
T ss_pred             CccccccCCEEEECCCccccHHHHHHH----HHCCCEEEEECC
Confidence            311  3799999999988877766554    456777788764

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=96.20  E-value=0.0089  Score=55.96  Aligned_cols=34  Identities=18%  Similarity=0.463  Sum_probs=28.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEE-EcC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLV-HSR   62 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~-~dr   62 (335)
                      ..+.||||.|+|.||..+++++...|.+|+. .|+
T Consensus         5 ~~~~kvgInGFGRIGrlv~R~~~~~~veivainDp   39 (346)
T 3h9e_O            5 ARELTVGINGFGRIGRLVLRACMEKGVKVVAVNDP   39 (346)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             CCeeEEEEECCChHHHHHHHHHHhCCCEEEEEeCC
Confidence            3567999999999999999999888888766 565

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=96.19  E-value=0.0063  Score=57.89  Aligned_cols=29  Identities=17%  Similarity=0.500  Sum_probs=24.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC---CeEEEE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH---HTLLVH   60 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G---~~V~~~   60 (335)
                      +||+|+|+|.||..+.+.|.+.+   ++|+++
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaI   34 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI   34 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEE
Confidence            59999999999999999998763   566554

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=96.18  E-value=0.0052  Score=57.69  Aligned_cols=89  Identities=17%  Similarity=0.217  Sum_probs=54.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHH---c-CCeEEEE-cC-CCCcHHHHHhC---------------------C--Ccee--cC
Q 044593           32 LKIAVIGFGNFGQFLAKAFAR---H-HHTLLVH-SR-SDHSPAVRQQL---------------------N--APFF--AD   80 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~---~-G~~V~~~-dr-~~~~~~~a~~~---------------------g--~~~~--~~   80 (335)
                      +||+|+|+|.+|..+.+.|.+   . .++|+++ |+ +++......+.                     |  +...  .+
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d   82 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERS   82 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecCC
Confidence            599999999999999999987   4 4676554 43 11221111110                     1  1111  23


Q ss_pred             hhhHhhc--CCCEEEEecCchhHHHHHhhccccccCCcc--EEEEcCC
Q 044593           81 LNDLCEL--HPDVVLLSTSILSTQSVLKSIPFQRLKRST--LFVDVLS  124 (335)
Q Consensus        81 ~~~~~~~--~aDvVIlavp~~~~~~vl~~l~~~~l~~~~--iVvd~~S  124 (335)
                      +.++.+.  ++|+||.|+|.....+....+    ++.|.  +|+|.++
T Consensus        83 p~~l~~~~~~vDvV~e~tg~~~s~e~a~~~----l~~GakkVVId~~a  126 (339)
T 2x5j_O           83 LQSLPWRELGVDVVLDCTGVYGSREHGEAH----IAAGAKKVLFSHPG  126 (339)
T ss_dssp             GGGCCHHHHTCSEEEECSSSCCSHHHHHHH----HHTTCSEEEESSCC
T ss_pred             hHHCcccccCCCEEEECCCccccHHHHHHH----HHcCCCEEEEeccc
Confidence            4443112  799999999988777666554    23343  6888776

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=96.18  E-value=0.018  Score=55.56  Aligned_cols=92  Identities=14%  Similarity=0.131  Sum_probs=64.8

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecCh------------------------hh
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADL------------------------ND   83 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~------------------------~~   83 (335)
                      ..+.+|.|+|+ |.+|...+..++..|.+|++.+++++..+.++++|....-+.                        +.
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKL  298 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHH
Confidence            35689999997 999999999999999999999988888888888887532111                        11


Q ss_pred             H---hhcCCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           84 L---CELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        84 ~---~~~~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      +   ....+|+||-|+........+.     .++++..++.+++.
T Consensus       299 v~~~~g~g~Dvvid~~G~~~~~~~~~-----~l~~~G~iv~~G~~  338 (447)
T 4a0s_A          299 VVEKAGREPDIVFEHTGRVTFGLSVI-----VARRGGTVVTCGSS  338 (447)
T ss_dssp             HHHHHSSCCSEEEECSCHHHHHHHHH-----HSCTTCEEEESCCT
T ss_pred             HHHHhCCCceEEEECCCchHHHHHHH-----HHhcCCEEEEEecC
Confidence            1   1035888888887654444333     34466677777644

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.16  E-value=0.01  Score=54.61  Aligned_cols=65  Identities=14%  Similarity=0.084  Sum_probs=45.4

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH---H---HHH-hCCCce-------ecChhhHhhcCCCEEEEe
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP---A---VRQ-QLNAPF-------FADLNDLCELHPDVVLLS   95 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~---~---~a~-~~g~~~-------~~~~~~~~~~~aDvVIla   95 (335)
                      +++|.|.| .|.+|+.++..|.+.|++|.+..|+++..   .   ... ..++..       ..+..+++ +++|+||-+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~D~Vih~   87 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPI-AGCDFVFHV   87 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHH-TTCSEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHH-cCCCEEEEe
Confidence            68999999 79999999999999999999888876431   1   111 112221       12334555 689999975


Q ss_pred             c
Q 044593           96 T   96 (335)
Q Consensus        96 v   96 (335)
                      .
T Consensus        88 A   88 (338)
T 2rh8_A           88 A   88 (338)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.16  E-value=0.014  Score=55.55  Aligned_cols=91  Identities=11%  Similarity=0.081  Sum_probs=64.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC-------CcH-----HHHHhCC-CceecChhhHhhcCCCEEEE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD-------HSP-----AVRQQLN-APFFADLNDLCELHPDVVLL   94 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~-------~~~-----~~a~~~g-~~~~~~~~~~~~~~aDvVIl   94 (335)
                      ....||.|+|.|..|..+|+.+...|. +|+++|++-       ..+     ..+.... .....++.+++ +++|++|=
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav-~~ADV~IG  264 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDAL-EGADIFIG  264 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHH-HTTCSEEE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHh-ccCCEEEe
Confidence            345799999999999999999999998 999999872       111     1222211 11234577877 78999885


Q ss_pred             ec-CchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           95 ST-SILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        95 av-p~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      +. |.-.++++++.+.     ++.+|+++++-
T Consensus       265 ~Sapgl~T~EmVk~Ma-----~~pIIfalsNP  291 (398)
T 2a9f_A          265 VSAPGVLKAEWISKMA-----ARPVIFAMANP  291 (398)
T ss_dssp             CCSTTCCCHHHHHTSC-----SSCEEEECCSS
T ss_pred             cCCCCCCCHHHHHhhC-----CCCEEEECCCC
Confidence            43 4344678887763     78899999754

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.15  E-value=0.0053  Score=55.97  Aligned_cols=60  Identities=20%  Similarity=0.265  Sum_probs=44.1

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhc--CCCEEEEecC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp   97 (335)
                      ++|+|.|.| .|.+|+.++..|.+.|++|++++++..       ..+....+..+++ +  ++|+||-+..
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~-------~D~~d~~~~~~~~-~~~~~d~vih~a~   64 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE-------LNLLDSRAVHDFF-ASERIDQVYLAAA   64 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT-------CCTTCHHHHHHHH-HHHCCSEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCcc-------CCccCHHHHHHHH-HhcCCCEEEEcCe
Confidence            467999999 699999999999999999999887642       1122122233444 5  8999998764

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.15  E-value=0.0052  Score=56.72  Aligned_cols=39  Identities=15%  Similarity=0.209  Sum_probs=32.6

Q ss_pred             cCCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           27 VKSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        27 ~~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ...++|+|.|.| .|.+|..++..|.+.|++|++++|++.
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   56 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT   56 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            345678999999 699999999999999999999999864

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=96.12  E-value=0.0033  Score=58.07  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             hhhcccCCCCCeEEEEcc-cHHHHHHHHHHHHcC--CeEEEEcCCC
Q 044593           22 LHTQYVKSTSLKIAVIGF-GNFGQFLAKAFARHH--HTLLVHSRSD   64 (335)
Q Consensus        22 ~~~~~~~~~~~kI~IIG~-G~mG~siA~~L~~~G--~~V~~~dr~~   64 (335)
                      .++.+..+++|+|.|.|. |.+|+.++..|.+.|  ++|++.+++.
T Consensus        15 ~~n~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~   60 (346)
T 4egb_A           15 TENLYFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALT   60 (346)
T ss_dssp             ---------CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCC
T ss_pred             ccccccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccc
Confidence            344445567889999995 999999999999999  6888888865

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.12  E-value=0.003  Score=59.15  Aligned_cols=65  Identities=15%  Similarity=0.104  Sum_probs=45.6

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCC--e-----EEEEcCCCC--cH-HHHHhC---C------CceecChhhHhhcCCC
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHH--T-----LLVHSRSDH--SP-AVRQQL---N------APFFADLNDLCELHPD   90 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~--~-----V~~~dr~~~--~~-~~a~~~---g------~~~~~~~~~~~~~~aD   90 (335)
                      .+||+|+| +|.+|++++..|...|.  +     +.++|+++.  .. -.+.++   .      +....+..+.+ ++||
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~-~daD   81 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAF-KDLD   81 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHT-TTCS
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHh-CCCC
Confidence            57999999 79999999999998775  5     999999752  11 112211   1      12234455556 8999


Q ss_pred             EEEEec
Q 044593           91 VVLLST   96 (335)
Q Consensus        91 vVIlav   96 (335)
                      +||++.
T Consensus        82 vVvitA   87 (333)
T 5mdh_A           82 VAILVG   87 (333)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999975

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.11  E-value=0.014  Score=54.61  Aligned_cols=88  Identities=15%  Similarity=0.154  Sum_probs=60.1

Q ss_pred             CeEEEEcccHHHHHH-HHHH-HHcCCe-EEEEcCCCC---cHHHHHhCCCceec----ChhhHh--hcCCCEEEEecCch
Q 044593           32 LKIAVIGFGNFGQFL-AKAF-ARHHHT-LLVHSRSDH---SPAVRQQLNAPFFA----DLNDLC--ELHPDVVLLSTSIL   99 (335)
Q Consensus        32 ~kI~IIG~G~mG~si-A~~L-~~~G~~-V~~~dr~~~---~~~~a~~~g~~~~~----~~~~~~--~~~aDvVIlavp~~   99 (335)
                      .+|.|+|+|.+|... +..+ +..|.+ |++.+++++   ..+.++++|+...+    +..++.  ...+|+||-|+...
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~i~~~~gg~Dvvid~~g~~  253 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQMDFIYEATGFP  253 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGGHHHHSCCEEEEEECSCCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHHHHHhCCCCCEEEECCCCh
Confidence            799999999999999 8888 778987 999999998   88888888875431    111110  01468888887754


Q ss_pred             -hHHHHHhhccccccCCccEEEEcCC
Q 044593          100 -STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 -~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                       .....++.+     +++..++.++.
T Consensus       254 ~~~~~~~~~l-----~~~G~iv~~g~  274 (357)
T 2b5w_A          254 KHAIQSVQAL-----APNGVGALLGV  274 (357)
T ss_dssp             HHHHHHHHHE-----EEEEEEEECCC
T ss_pred             HHHHHHHHHH-----hcCCEEEEEeC
Confidence             334444333     34455565543

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.10  E-value=0.015  Score=55.22  Aligned_cols=66  Identities=18%  Similarity=0.108  Sum_probs=43.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCC--e---EEEEcCCCCc----H-HHHHh--CCC-------ceecChhhHhhcCC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHH--T---LLVHSRSDHS----P-AVRQQ--LNA-------PFFADLNDLCELHP   89 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~--~---V~~~dr~~~~----~-~~a~~--~g~-------~~~~~~~~~~~~~a   89 (335)
                      ..+||+||| +|.+|.+++..+...+.  +   +.++|.+.+.    . -.+.+  .+.       ...++..+.+ ++|
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~-~da  109 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVF-EDV  109 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT-TTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHh-CCC
Confidence            457999999 79999999999998774  3   7776554332    1 11222  121       2233444555 899


Q ss_pred             CEEEEec
Q 044593           90 DVVLLST   96 (335)
Q Consensus        90 DvVIlav   96 (335)
                      |+||++.
T Consensus       110 DvVVita  116 (375)
T 7mdh_A          110 DWALLIG  116 (375)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcC
Confidence            9999965

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=96.09  E-value=0.009  Score=58.33  Aligned_cols=88  Identities=11%  Similarity=0.070  Sum_probs=66.6

Q ss_pred             CCCeEEEEccc----HHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           30 TSLKIAVIGFG----NFGQFLAKAFARHH-HTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        30 ~~~kI~IIG~G----~mG~siA~~L~~~G-~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      ...+|+|||++    .+|..+.+.|.+.| ..|+.+++.....     .|+..+.++.++. ...|++++++|...+.++
T Consensus         7 ~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i-----~G~~~y~sl~~lp-~~~Dlavi~vp~~~~~~~   80 (457)
T 2csu_A            7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIP-DEIDLAIIVVPKRFVKDT   80 (457)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCS-SCCSEEEECSCHHHHHHH
T ss_pred             CCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE-----CCEeccCCHHHcC-CCCCEEEEecCHHHHHHH
Confidence            35789999987    89999999999885 6777777663322     4777788888876 679999999999999999


Q ss_pred             HhhccccccCCccEEEEcCCC
Q 044593          105 LKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      +++...  ..-..+|+-..+.
T Consensus        81 v~e~~~--~Gi~~vv~~s~G~   99 (457)
T 2csu_A           81 LIQCGE--KGVKGVVIITAGF   99 (457)
T ss_dssp             HHHHHH--HTCCEEEECCCSS
T ss_pred             HHHHHH--cCCCEEEEecCCC
Confidence            988742  3334455544444

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.09  E-value=0.01  Score=54.93  Aligned_cols=70  Identities=16%  Similarity=0.198  Sum_probs=48.6

Q ss_pred             CCCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCc-HHHHH----------hCCCce----ecC---hhhHhhcC
Q 044593           28 KSTSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHS-PAVRQ----------QLNAPF----FAD---LNDLCELH   88 (335)
Q Consensus        28 ~~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~-~~~a~----------~~g~~~----~~~---~~~~~~~~   88 (335)
                      .+++|+|.|.|. |.+|+.++..|.+.|++|++++|++.. .+...          ..++..    ..+   ..+++ ++
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~  102 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC-AG  102 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHH-TT
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHh-cC
Confidence            356789999995 999999999999999999999997642 11111          123321    122   23445 68


Q ss_pred             CCEEEEecCc
Q 044593           89 PDVVLLSTSI   98 (335)
Q Consensus        89 aDvVIlavp~   98 (335)
                      +|+||.+...
T Consensus       103 ~d~vih~A~~  112 (352)
T 1sb8_A          103 VDYVLHQAAL  112 (352)
T ss_dssp             CSEEEECCSC
T ss_pred             CCEEEECCcc
Confidence            9999987653

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.09  E-value=0.014  Score=55.29  Aligned_cols=90  Identities=12%  Similarity=0.124  Sum_probs=62.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHhCCCcee-c-C---hhhH---hh-----cCCCEEEEe
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSPAVRQQLNAPFF-A-D---LNDL---CE-----LHPDVVLLS   95 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~~a~~~g~~~~-~-~---~~~~---~~-----~~aDvVIla   95 (335)
                      .+.+|.|+|+|.+|...+..++..| .+|++.+++++..+.++++|.... + +   ..++   +.     ..+|+||-|
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~  274 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  274 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEEC
Confidence            4679999999999999999999999 699999999888888888887521 1 1   1111   10     157888888


Q ss_pred             cCch-hHHHHHhhccccccCCccEEEEcCC
Q 044593           96 TSIL-STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        96 vp~~-~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +... .+...++.+     +++..++.++.
T Consensus       275 ~g~~~~~~~~~~~l-----~~~G~iv~~G~  299 (380)
T 1vj0_A          275 TGDSRALLEGSELL-----RRGGFYSVAGV  299 (380)
T ss_dssp             SSCTTHHHHHHHHE-----EEEEEEEECCC
T ss_pred             CCCHHHHHHHHHHH-----hcCCEEEEEec
Confidence            8753 344444433     34556666654

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=96.08  E-value=0.0074  Score=55.46  Aligned_cols=89  Identities=10%  Similarity=0.181  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-cChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-ADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+.+|.|+|+|.+|...+..++..|.+|++.+ +++..+.++++|.... ++.+++- ..+|+||-|+........+  
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~-~g~Dvv~d~~g~~~~~~~~--  216 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVT-QKYFAIFDAVNSQNAAALV--  216 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCC-SCEEEEECC-------TTG--
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhC-CCccEEEECCCchhHHHHH--
Confidence            357899999999999999999999999999999 8888888888887532 2222222 5789999988765543222  


Q ss_pred             ccccccCCccEEEEcCC
Q 044593          108 IPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~S  124 (335)
                         ..++++..++.+++
T Consensus       217 ---~~l~~~G~~v~~g~  230 (315)
T 3goh_A          217 ---PSLKANGHIICIQD  230 (315)
T ss_dssp             ---GGEEEEEEEEEECC
T ss_pred             ---HHhcCCCEEEEEeC
Confidence               34556667776654

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.06  E-value=0.0064  Score=60.06  Aligned_cols=63  Identities=21%  Similarity=0.294  Sum_probs=46.4

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecC
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      +|||.|.| .|.+|+.++..|.+.|++|++++|++...+. ....  ......+.+ .++|+||-+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~-v~~d--~~~~~~~~l-~~~D~Vih~A~  210 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGK-RFWD--PLNPASDLL-DGADVLVHLAG  210 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTC-EECC--TTSCCTTTT-TTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccc-eeec--ccchhHHhc-CCCCEEEECCC
Confidence            78999999 6999999999999999999999998764321 0001  112223444 78999998654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.06  E-value=0.015  Score=54.02  Aligned_cols=91  Identities=11%  Similarity=0.011  Sum_probs=61.6

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-hCCCcee---c---ChhhHhh----cCCCEEEEec
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-QLNAPFF---A---DLNDLCE----LHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-~~g~~~~---~---~~~~~~~----~~aDvVIlav   96 (335)
                      ..+.+|.|+|+ |.+|..++..++..|++|++.+++++..+.++ ++|....   .   +..+.+.    ..+|+||-++
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~  233 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENV  233 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECC
Confidence            35678999996 99999999999999999999999987777676 6776421   1   2222220    2478888887


Q ss_pred             CchhHHHHHhhccccccCCccEEEEcCC
Q 044593           97 SILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ........++.     ++++..++.++.
T Consensus       234 g~~~~~~~~~~-----l~~~G~~v~~G~  256 (345)
T 2j3h_A          234 GGKMLDAVLVN-----MNMHGRIAVCGM  256 (345)
T ss_dssp             CHHHHHHHHTT-----EEEEEEEEECCC
T ss_pred             CHHHHHHHHHH-----HhcCCEEEEEcc
Confidence            75433333333     345556666553

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=96.02  E-value=0.0035  Score=58.78  Aligned_cols=89  Identities=16%  Similarity=0.156  Sum_probs=52.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC---CeEEEE-cCCC-CcHHHHH-----------------hC-----CCc--e--ecC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH---HTLLVH-SRSD-HSPAVRQ-----------------QL-----NAP--F--FAD   80 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G---~~V~~~-dr~~-~~~~~a~-----------------~~-----g~~--~--~~~   80 (335)
                      +||+|+|+|.+|..+.+.|.+.+   .+|+.+ |... +......                 ..     |-.  .  ..+
T Consensus         2 ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~d   81 (337)
T 1rm4_O            2 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRN   81 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEecCC
Confidence            58999999999999999998863   355443 3211 1111000                 00     111  1  123


Q ss_pred             hhhHhhc--CCCEEEEecCchhHHHHHhhccccccCCccEEEEcCC
Q 044593           81 LNDLCEL--HPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        81 ~~~~~~~--~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +.++.+.  ++|+||.|+|.....+.....    ++.|+.++|+++
T Consensus        82 p~~i~w~~~gvDiV~eatg~~~s~e~a~~~----l~~Gak~V~iSa  123 (337)
T 1rm4_O           82 PVNLPWGDMGIDLVIEGTGVFVDRDGAGKH----LQAGAKKVLITA  123 (337)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHHHH----HHTTCSEEEESS
T ss_pred             hhhCcccccCCCEEEECCCchhhHHHHHHH----HHcCCEEEEECC
Confidence            4333113  799999999988766666543    345666666654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.02  E-value=0.011  Score=54.65  Aligned_cols=92  Identities=12%  Similarity=0.016  Sum_probs=64.3

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-HhCCCcee-----cChhhHh----hcCCCEEEEecC
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-QQLNAPFF-----ADLNDLC----ELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-~~~g~~~~-----~~~~~~~----~~~aDvVIlavp   97 (335)
                      ..+.+|.|+|+ |.+|...+..++..|.+|++.+++++..+.+ +++|....     .+..+.+    ....|+||-|+.
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  227 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG  227 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC
Confidence            35789999998 9999999999999999999999998877777 77887421     1111111    025788888887


Q ss_pred             chhHHHHHhhccccccCCccEEEEcCCC
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .......++.     ++++..++.++..
T Consensus       228 ~~~~~~~~~~-----l~~~G~iv~~G~~  250 (336)
T 4b7c_A          228 GEILDTVLTR-----IAFKARIVLCGAI  250 (336)
T ss_dssp             HHHHHHHHTT-----EEEEEEEEECCCG
T ss_pred             cchHHHHHHH-----HhhCCEEEEEeec
Confidence            6444444433     4456667776643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.00  E-value=0.017  Score=54.96  Aligned_cols=71  Identities=10%  Similarity=0.053  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec----Ch-hhHhh-----cCCCEEEEecC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA----DL-NDLCE-----LHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~----~~-~~~~~-----~~aDvVIlavp   97 (335)
                      ..+.+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|+....    +. .+.+.     ..+|+||-|+.
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g  263 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVG  263 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCC
Confidence            356799999999999999998888898 899999999888888888874221    11 11110     15788888887


Q ss_pred             ch
Q 044593           98 IL   99 (335)
Q Consensus        98 ~~   99 (335)
                      ..
T Consensus       264 ~~  265 (398)
T 2dph_A          264 FE  265 (398)
T ss_dssp             TT
T ss_pred             Cc
Confidence            54

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.98  E-value=0.012  Score=55.06  Aligned_cols=90  Identities=10%  Similarity=0.037  Sum_probs=64.5

Q ss_pred             CCCeEEEE-cccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-----cChhhHh----hcCCCEEEEecCch
Q 044593           30 TSLKIAVI-GFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLC----ELHPDVVLLSTSIL   99 (335)
Q Consensus        30 ~~~kI~II-G~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~----~~~aDvVIlavp~~   99 (335)
                      .+.+|.|+ |.|.+|...+..++..|.+|++.+++++..+.++++|....     .+..+.+    ....|+||-|+...
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~  246 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA  246 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH
Confidence            56799999 58999999999999999999999999988887888776421     1121211    02588999888876


Q ss_pred             hHHHHHhhccccccCCccEEEEcCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .....+..+     +++..++.++.
T Consensus       247 ~~~~~~~~l-----~~~G~iv~~g~  266 (353)
T 4dup_A          247 YFERNIASL-----AKDGCLSIIAF  266 (353)
T ss_dssp             GHHHHHHTE-----EEEEEEEECCC
T ss_pred             HHHHHHHHh-----ccCCEEEEEEe
Confidence            555555444     34556666654

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.97  E-value=0.012  Score=55.11  Aligned_cols=35  Identities=14%  Similarity=0.357  Sum_probs=31.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      +..||.|||+|.+|+.++..|...|. +++++|.+.
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            46799999999999999999999997 899999864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.96  E-value=0.021  Score=53.13  Aligned_cols=91  Identities=12%  Similarity=0.084  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CCeEEEEcCCCCcHHHHHhCCCceec----ChhhHhh-----cCCCEEEEecCc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQLNAPFFA----DLNDLCE-----LHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~~a~~~g~~~~~----~~~~~~~-----~~aDvVIlavp~   98 (335)
                      ....+|.|+|+|.+|...+..++.. |.+|++.|++++..+.++++|....-    +..+.+.     ..+|+||-|+..
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~  249 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGA  249 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCC
Confidence            3568999999999999988888877 68999999999888889998875321    1111110     268888888887


Q ss_pred             h-hHHHHHhhccccccCCccEEEEcCC
Q 044593           99 L-STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~-~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      . .+...++.+     +++..++.++.
T Consensus       250 ~~~~~~~~~~l-----~~~G~iv~~G~  271 (345)
T 3jv7_A          250 QSTIDTAQQVV-----AVDGHISVVGI  271 (345)
T ss_dssp             HHHHHHHHHHE-----EEEEEEEECSC
T ss_pred             HHHHHHHHHHH-----hcCCEEEEECC
Confidence            6 344444433     35556666653

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=95.95  E-value=0.014  Score=57.38  Aligned_cols=65  Identities=17%  Similarity=0.198  Sum_probs=49.5

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHHcCCeEEEEcCCCCc-HHHHHhCCCcee--cChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQF-LAKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFF--ADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~s-iA~~L~~~G~~V~~~dr~~~~-~~~a~~~g~~~~--~~~~~~~~~~aDvVIlav   96 (335)
                      ..++|.|||.|..|.+ +|+.|.+.|++|.++|..... .+...+.|+...  .+.. .+ .++|+||+.-
T Consensus        18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~-~~-~~a~~vv~s~   86 (491)
T 2f00_A           18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRPE-NV-RDASVVVVSS   86 (491)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGG-GG-TTCSEEEECT
T ss_pred             cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCEEECCCCHH-Hc-CCCCEEEECC
Confidence            3578999999999998 999999999999999987643 234556787653  2222 34 6799999863

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.95  E-value=0.012  Score=54.27  Aligned_cols=90  Identities=16%  Similarity=0.060  Sum_probs=59.4

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec-----Chhh-Hh----hcCCCEEEEecCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA-----DLND-LC----ELHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~-----~~~~-~~----~~~aDvVIlavp~   98 (335)
                      .+.+|.|+| .|.+|..++..++..|++|++.+++++..+.+++.|....-     +..+ +.    ....|++|-|+..
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g~  219 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGR  219 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCch
Confidence            467899999 79999999999999999999999998777666666653211     1111 11    0146777777764


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ......++.+     +++..++.+++
T Consensus       220 ~~~~~~~~~l-----~~~G~iv~~g~  240 (327)
T 1qor_A          220 DTWERSLDCL-----QRRGLMVSFGN  240 (327)
T ss_dssp             GGHHHHHHTE-----EEEEEEEECCC
T ss_pred             HHHHHHHHHh-----cCCCEEEEEec
Confidence            4444444433     34445555554

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.94  E-value=0.0082  Score=56.43  Aligned_cols=69  Identities=17%  Similarity=0.123  Sum_probs=47.8

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcC-CeEEEEcCCCCcH-HHHH-hCCCce----ecCh---hhHhhcCCCEEEEecC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHH-HTLLVHSRSDHSP-AVRQ-QLNAPF----FADL---NDLCELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G-~~V~~~dr~~~~~-~~a~-~~g~~~----~~~~---~~~~~~~aDvVIlavp   97 (335)
                      .++|+|.|.| .|.+|..++..|.+.| ++|++++|++... +... ..++..    ..+.   .+++ +++|+||.+..
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~-~~~d~Vih~A~  108 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQ-DEYDYVFHLAT  108 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCC-SCCSEEEECCC
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHh-hCCCEEEECCC
Confidence            4578999999 5999999999999999 9999999986532 1111 112221    1222   2334 68999998765


Q ss_pred             c
Q 044593           98 I   98 (335)
Q Consensus        98 ~   98 (335)
                      .
T Consensus       109 ~  109 (377)
T 2q1s_A          109 Y  109 (377)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=95.93  E-value=0.018  Score=53.17  Aligned_cols=87  Identities=11%  Similarity=0.072  Sum_probs=60.9

Q ss_pred             eEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhH----h----hcCCCEEEEecCchhHHH
Q 044593           33 KIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDL----C----ELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        33 kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~----~----~~~aDvVIlavp~~~~~~  103 (335)
                      +|.|+|+ |.+|...+..++..|.+|++.+++++..+.++++|....-+..+.    .    ...+|+||-|+.......
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  232 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLAS  232 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTHHHHH
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcHHHHHH
Confidence            7999997 999999999999999999999999888888888887532111111    1    024788888887654444


Q ss_pred             HHhhccccccCCccEEEEcCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .++.     ++++..++.++.
T Consensus       233 ~~~~-----l~~~G~iv~~G~  248 (330)
T 1tt7_A          233 LLSK-----IQYGGSVAVSGL  248 (330)
T ss_dssp             HHTT-----EEEEEEEEECCC
T ss_pred             HHHh-----hcCCCEEEEEec
Confidence            4433     345556666653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.93  E-value=0.0091  Score=54.77  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=33.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ++|+|.|.|. |.+|+.++..|.+.|++|++++|++..
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   39 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGE   39 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcc
Confidence            4689999995 999999999999999999999998754

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=95.93  E-value=0.017  Score=53.24  Aligned_cols=86  Identities=13%  Similarity=0.081  Sum_probs=57.0

Q ss_pred             eEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---cCh-hhHh----hcCCCEEEEecCchhHHH
Q 044593           33 KIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---ADL-NDLC----ELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        33 kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~~~-~~~~----~~~aDvVIlavp~~~~~~  103 (335)
                      +|.|+|+ |.+|...+..++..|.+|++.+++++..+.++++|....   .+. .+..    ...+|+||-|+.......
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  231 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTLAT  231 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTTTHHH
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcHHHHHH
Confidence            7999997 999999999999999999999999888888888886421   111 1111    024677777776544444


Q ss_pred             HHhhccccccCCccEEEEcC
Q 044593          104 VLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~  123 (335)
                      .++.+     +++..++.++
T Consensus       232 ~~~~l-----~~~G~~v~~G  246 (328)
T 1xa0_A          232 VLSRM-----RYGGAVAVSG  246 (328)
T ss_dssp             HHHTE-----EEEEEEEECS
T ss_pred             HHHhh-----ccCCEEEEEe
Confidence            44333     3444555554

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.91  E-value=0.013  Score=55.25  Aligned_cols=90  Identities=14%  Similarity=0.008  Sum_probs=61.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCcee-----cChhhHhh----cCCCEEEEecCch
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLCE----LHPDVVLLSTSIL   99 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~~----~~aDvVIlavp~~   99 (335)
                      .+.+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++|....     .+..+.+.    ..+|+||-++...
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            46799999999999999999888998 69999999888888888887421     12211110    1478888888753


Q ss_pred             -hHHHHHhhccccccCCccEEEEcCC
Q 044593          100 -STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 -~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                       .....++.     ++++..++.++.
T Consensus       270 ~~~~~~~~~-----l~~~G~iv~~G~  290 (371)
T 1f8f_A          270 EILKQGVDA-----LGILGKIAVVGA  290 (371)
T ss_dssp             HHHHHHHHT-----EEEEEEEEECCC
T ss_pred             HHHHHHHHH-----HhcCCEEEEeCC
Confidence             33444433     335556666653

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.91  E-value=0.012  Score=54.88  Aligned_cols=68  Identities=19%  Similarity=0.298  Sum_probs=48.1

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHc-CC-eEEEEcCCCCcHHHH-Hh---CCCce----ecCh---hhHhhcCCCEEEE
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARH-HH-TLLVHSRSDHSPAVR-QQ---LNAPF----FADL---NDLCELHPDVVLL   94 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~-G~-~V~~~dr~~~~~~~a-~~---~g~~~----~~~~---~~~~~~~aDvVIl   94 (335)
                      +++++|.|.| .|.+|..+++.|.+. |+ +|++++|++...... ..   .++..    ..+.   .+++ +++|+||-
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~-~~~D~Vih   97 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYAL-EGVDICIH   97 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHT-TTCSEEEE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHH-hcCCEEEE
Confidence            4568999999 699999999999999 97 999999987543322 11   23321    1222   3344 68999998


Q ss_pred             ecC
Q 044593           95 STS   97 (335)
Q Consensus        95 avp   97 (335)
                      +..
T Consensus        98 ~Aa  100 (344)
T 2gn4_A           98 AAA  100 (344)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            764

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=95.90  E-value=0.011  Score=54.45  Aligned_cols=67  Identities=16%  Similarity=0.165  Sum_probs=45.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHc--CCeEEEEcCCCC--cHHHHHh---CCCce----ecC---hhhHhhcCCCEEEEe
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARH--HHTLLVHSRSDH--SPAVRQQ---LNAPF----FAD---LNDLCELHPDVVLLS   95 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~--G~~V~~~dr~~~--~~~~a~~---~g~~~----~~~---~~~~~~~~aDvVIla   95 (335)
                      +|+|.|.| .|.+|+.++..|.+.  |++|++++|++.  ..+...+   .++..    ..+   ..+++ +++|+||-+
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~d~vih~   82 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLA-AKADAIVHY   82 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHH-TTCSEEEEC
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHh-hcCCEEEEC
Confidence            57999999 699999999999998  899999999752  1111111   12221    122   23445 688999987


Q ss_pred             cCc
Q 044593           96 TSI   98 (335)
Q Consensus        96 vp~   98 (335)
                      ...
T Consensus        83 A~~   85 (348)
T 1oc2_A           83 AAE   85 (348)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            653

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.89  E-value=0.014  Score=54.72  Aligned_cols=90  Identities=14%  Similarity=0.067  Sum_probs=62.1

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---c--ChhhHhh-----cCCCEEEEecCc
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---A--DLNDLCE-----LHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~--~~~~~~~-----~~aDvVIlavp~   98 (335)
                      .+.+|.|+|+ |.+|..++..++..|++|++.+++++..+.+++.|....   .  +..+.+.     ...|+||-|+..
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~  249 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN  249 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCCh
Confidence            4679999997 999999999999999999999999887777888776421   1  1111110     157888888765


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ......++.     ++++..++.++.
T Consensus       250 ~~~~~~~~~-----l~~~G~iv~~g~  270 (351)
T 1yb5_A          250 VNLSKDLSL-----LSHGGRVIVVGS  270 (351)
T ss_dssp             HHHHHHHHH-----EEEEEEEEECCC
T ss_pred             HHHHHHHHh-----ccCCCEEEEEec
Confidence            444433333     445556666653

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=95.89  E-value=0.014  Score=57.08  Aligned_cols=65  Identities=18%  Similarity=0.173  Sum_probs=49.6

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHHcCCeEEEEcCCCCc-HHHHHhCCCcee--cChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQF-LAKAFARHHHTLLVHSRSDHS-PAVRQQLNAPFF--ADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~s-iA~~L~~~G~~V~~~dr~~~~-~~~a~~~g~~~~--~~~~~~~~~~aDvVIlav   96 (335)
                      ..++|.|||.|..|.+ +|+.|.+.|++|.++|..... .+...+.|+...  .+.. .+ .++|+||+.-
T Consensus        17 ~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~-~~-~~a~~vv~s~   85 (475)
T 1p3d_A           17 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEE-HI-EGASVVVVSS   85 (475)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGG-GG-TTCSEEEECT
T ss_pred             cCCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCHH-Hc-CCCCEEEECC
Confidence            3578999999999998 999999999999999987653 234556787653  2222 34 6799999863

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.88  E-value=0.015  Score=53.31  Aligned_cols=36  Identities=22%  Similarity=0.436  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      .+..||.|||+|.+|+.++.+|...|. +++++|.+.
T Consensus        34 L~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            356799999999999999999999997 899999885

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=95.87  E-value=0.0054  Score=55.07  Aligned_cols=57  Identities=9%  Similarity=0.283  Sum_probs=42.1

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhc--CCCEEEEecC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp   97 (335)
                      |||.|.| .|.+|+.++..|.+.|++|++.+|.+-        .+....+..+++ +  ++|+||.+..
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--------D~~d~~~~~~~~-~~~~~d~vi~~a~   65 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLL--------DITNISQVQQVV-QEIRPHIIIHCAA   65 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTS--------CTTCHHHHHHHH-HHHCCSEEEECCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccccc--------CCCCHHHHHHHH-HhcCCCEEEECCc
Confidence            5899999 699999999999999999999999532        111112233344 3  6999998753

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.86  E-value=0.0085  Score=58.03  Aligned_cols=65  Identities=15%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH--HHHHhCCCcee-cC-hhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP--AVRQQLNAPFF-AD-LNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~--~~a~~~g~~~~-~~-~~~~~~~~aDvVIlav   96 (335)
                      +.+||.|||.|..|.+.|+.|.+.|++|+++|......  .... .|+... .. ..+.+ .++|+||++.
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~-~~~d~vV~s~   72 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWL-MAADLIVASP   72 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHH-HTCSEEEECT
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHh-ccCCEEEeCC
Confidence            46799999999999999999999999999999875432  2233 677653 11 23444 5799999975

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=95.86  E-value=0.025  Score=50.00  Aligned_cols=40  Identities=10%  Similarity=0.141  Sum_probs=35.0

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++++|.|.| .|.||..+++.|.+.|++|++.+|+++..+
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~   50 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGE   50 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHH
Confidence            4567899998 699999999999999999999999986553

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=95.83  E-value=0.0039  Score=58.28  Aligned_cols=89  Identities=15%  Similarity=0.208  Sum_probs=55.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEE-cC-CCCcHHHHHh----CC-------------------Ccee--cChhhH
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVH-SR-SDHSPAVRQQ----LN-------------------APFF--ADLNDL   84 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~-dr-~~~~~~~a~~----~g-------------------~~~~--~~~~~~   84 (335)
                      +||+|+|+|.+|..+.+.|.++.++|+++ |. +.+......+    .|                   +...  .++.++
T Consensus         1 ikVgInG~G~IGr~vlr~l~~~~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~l   80 (331)
T 2g82_O            1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEI   80 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChhhC
Confidence            48999999999999999988777787754 42 1111111111    11                   1111  134433


Q ss_pred             hhc--CCCEEEEecCchhHHHHHhhccccccCCcc--EEEEcCC
Q 044593           85 CEL--HPDVVLLSTSILSTQSVLKSIPFQRLKRST--LFVDVLS  124 (335)
Q Consensus        85 ~~~--~aDvVIlavp~~~~~~vl~~l~~~~l~~~~--iVvd~~S  124 (335)
                      .+.  ++|+||.|+|.....+.....    ++.|+  +|+|..+
T Consensus        81 ~w~~~gvDiV~estG~~~s~e~a~~~----l~aGakkvVIsaps  120 (331)
T 2g82_O           81 PWAEAGVGVVIESTGVFTDADKAKAH----LEGGAKKVIITAPA  120 (331)
T ss_dssp             CTTTTTEEEEEECSSSCCBHHHHTHH----HHTTCSEEEESSCC
T ss_pred             cccccCCCEEEECCCchhhHHHHHHH----HHCCCCEEEECCCC
Confidence            212  689999999988777666544    33455  7777654

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.82  E-value=0.0088  Score=55.51  Aligned_cols=38  Identities=18%  Similarity=0.098  Sum_probs=34.0

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      +++|+|.|.| .|.+|+.++..|.+.|++|++++|++..
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   45 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   45 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence            3568999999 6999999999999999999999998754

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.82  E-value=0.014  Score=58.16  Aligned_cols=72  Identities=11%  Similarity=0.102  Sum_probs=54.8

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC-CCce----ecChhhHh---hcCCCEEEEecCch
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL-NAPF----FADLNDLC---ELHPDVVLLSTSIL   99 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~-g~~~----~~~~~~~~---~~~aDvVIlavp~~   99 (335)
                      ....++|.|+|+|.+|..++..|.+.|++|+++|.+++..+.+.+. |+..    .++.+.+.   ..++|.+|+ ++.+
T Consensus       124 ~~~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~D  202 (565)
T 4gx0_A          124 DDTRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-NLSD  202 (565)
T ss_dssp             TTCCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-CSCH
T ss_pred             cccCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-eCCc
Confidence            3456789999999999999999999999999999999887767776 7743    22222221   268999988 5555


Q ss_pred             h
Q 044593          100 S  100 (335)
Q Consensus       100 ~  100 (335)
                      .
T Consensus       203 ~  203 (565)
T 4gx0_A          203 P  203 (565)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=95.81  E-value=0.0079  Score=57.42  Aligned_cols=78  Identities=17%  Similarity=0.254  Sum_probs=58.6

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCC---eEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-----
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHH---TLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-----  100 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~---~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-----  100 (335)
                      ...||.|||. |..|..-+..+...|.   +|+++|+++..      .|-.    .+++  .++|+||-|+....     
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~------~g~~----~~~i--~~aDivIn~vlig~~aP~L  280 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS------RGGP----FDEI--PQADIFINCIYLSKPIAPF  280 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT------TCSC----CTHH--HHSSEEEECCCCCSSCCCS
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc------cCCc----hhhH--hhCCEEEECcCcCCCCCcc
Confidence            3569999998 9999999999999997   89999987521      1322    1344  57999999997532     


Q ss_pred             -HHHHHhhcccccc-CCccEEEEcCC
Q 044593          101 -TQSVLKSIPFQRL-KRSTLFVDVLS  124 (335)
Q Consensus       101 -~~~vl~~l~~~~l-~~~~iVvd~~S  124 (335)
                       +.+.++.     + +++.+|+|++.
T Consensus       281 vt~e~v~~-----m~k~gsVIVDVA~  301 (394)
T 2qrj_A          281 TNMEKLNN-----PNRRLRTVVDVSA  301 (394)
T ss_dssp             CCHHHHCC-----TTCCCCEEEETTC
T ss_pred             cCHHHHhc-----CcCCCeEEEEEec
Confidence             3444433     4 79999999964

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.80  E-value=0.0087  Score=53.50  Aligned_cols=65  Identities=17%  Similarity=0.310  Sum_probs=46.4

Q ss_pred             eEEEEcc-cHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecCc
Q 044593           33 KIAVIGF-GNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        33 kI~IIG~-G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp~   98 (335)
                      ||.|.|. |.+|+.++..|.+.  |++|++.+|++.........++..    ..+   ..+++ +++|+||.+...
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSAL-QGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHT-TTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHH-hCCCEEEEeCCC
Confidence            5889995 99999999999998  999999999876544333344432    122   23444 689999987653

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=95.80  E-value=0.019  Score=50.48  Aligned_cols=40  Identities=20%  Similarity=0.260  Sum_probs=34.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCC-CCcHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRS-DHSPA   68 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~-~~~~~   68 (335)
                      +++++|.|.| .|.||..+++.|.+.|++|++.+|+ ++..+
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~   46 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANID   46 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHH
Confidence            4567898998 6999999999999999999999998 65443

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=95.79  E-value=0.019  Score=52.77  Aligned_cols=66  Identities=15%  Similarity=0.113  Sum_probs=45.1

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH---hC-----CCc-------eecChhhHhhcCCCEEE
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ---QL-----NAP-------FFADLNDLCELHPDVVL   93 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~---~~-----g~~-------~~~~~~~~~~~~aDvVI   93 (335)
                      ++++|.|.| .|.+|+.++..|.+.|++|++.+|++.......   +.     ++.       ...+..+++ +++|+||
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~d~Vi   82 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAI-KGCTGVF   82 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHH-TTCSEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHH-cCCCEEE
Confidence            467899999 799999999999999999999988876432111   11     111       112334555 6899999


Q ss_pred             Eec
Q 044593           94 LST   96 (335)
Q Consensus        94 lav   96 (335)
                      -+.
T Consensus        83 h~A   85 (337)
T 2c29_D           83 HVA   85 (337)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            754

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=95.78  E-value=0.015  Score=53.41  Aligned_cols=87  Identities=11%  Similarity=0.037  Sum_probs=61.0

Q ss_pred             eEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhh------HhhcCCCEEEEecCchhHHHHH
Q 044593           33 KIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLND------LCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        33 kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~------~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      +|.|+|+ |.+|...+..++..|.+|++.+++++..+.++++|....-+..+      +.....|++|-|+........+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  228 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGDKVLAKVL  228 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCHHHHHHHH
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCcHHHHHHH
Confidence            4999997 99999999999999999999999998888888888753211111      1113578888887755444444


Q ss_pred             hhccccccCCccEEEEcCC
Q 044593          106 KSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~S  124 (335)
                      +.     ++++..++.++.
T Consensus       229 ~~-----l~~~G~iv~~G~  242 (324)
T 3nx4_A          229 AQ-----MNYGGCVAACGL  242 (324)
T ss_dssp             HT-----EEEEEEEEECCC
T ss_pred             HH-----HhcCCEEEEEec
Confidence            33     345566666654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=95.78  E-value=0.0097  Score=56.41  Aligned_cols=39  Identities=23%  Similarity=0.069  Sum_probs=33.1

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ..++.++|.|||.|..|.+.|..|++.|++|+++|+++.
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            344568999999999999999999999999999999864

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=95.77  E-value=0.011  Score=53.42  Aligned_cols=64  Identities=20%  Similarity=0.332  Sum_probs=45.5

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHc--CCeEEEEcCCCCcHHHHHhCCCce----ecCh---hhHhhc--CCCEEEEecC
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARH--HHTLLVHSRSDHSPAVRQQLNAPF----FADL---NDLCEL--HPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~--G~~V~~~dr~~~~~~~a~~~g~~~----~~~~---~~~~~~--~aDvVIlavp   97 (335)
                      +|+|.|.|. |.+|+.++..|.+.  |++|++.+|++.......  ++..    ..+.   .+++ +  ++|+||-+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~--~~~~~~~D~~d~~~~~~~~-~~~~~d~vih~a~   77 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVN--SGPFEVVNALDFNQIEHLV-EVHKITDIYLMAA   77 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHH--SSCEEECCTTCHHHHHHHH-HHTTCCEEEECCC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccC--CCceEEecCCCHHHHHHHH-hhcCCCEEEECCc
Confidence            478999995 99999999999998  899999999875533222  2221    1222   2333 4  7999998764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.75  E-value=0.017  Score=53.79  Aligned_cols=90  Identities=10%  Similarity=0.132  Sum_probs=63.5

Q ss_pred             CCCeEEEE-cccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec----ChhhHh----hcCCCEEEEecCchh
Q 044593           30 TSLKIAVI-GFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA----DLNDLC----ELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~II-G~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~----~~~~~~----~~~aDvVIlavp~~~  100 (335)
                      .+.+|.|+ |.|.+|...+..++..|.+|++.+++++..+.++++|....-    +..+.+    ....|+||-|+....
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~  229 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDM  229 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchH
Confidence            56799999 699999999999999999999999998888888888875321    221111    025899999887654


Q ss_pred             H-HHHHhhccccccCCccEEEEcCC
Q 044593          101 T-QSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 ~-~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      . ...++.+     +++..++.+++
T Consensus       230 ~~~~~~~~l-----~~~G~iv~~~~  249 (346)
T 3fbg_A          230 YYDDMIQLV-----KPRGHIATIVA  249 (346)
T ss_dssp             HHHHHHHHE-----EEEEEEEESSC
T ss_pred             HHHHHHHHh-----ccCCEEEEECC
Confidence            3 4444433     35556666654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.75  E-value=0.017  Score=53.98  Aligned_cols=90  Identities=10%  Similarity=0.001  Sum_probs=62.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---c--Chhh-Hhh----cCCCEEEEecCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---A--DLND-LCE----LHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~--~~~~-~~~----~~aDvVIlavp~   98 (335)
                      .+.+|.|+| .|.+|..++..++..|++|++.+++++..+.+++.|....   .  +..+ +..    ...|++|-|+..
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~  241 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGG  241 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCG
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCc
Confidence            467899999 7999999999999999999999999877777777676421   1  1111 110    247888888876


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ......++.+     +++..++.++.
T Consensus       242 ~~~~~~~~~l-----~~~G~iv~~G~  262 (354)
T 2j8z_A          242 SYWEKNVNCL-----ALDGRWVLYGL  262 (354)
T ss_dssp             GGHHHHHHHE-----EEEEEEEECCC
T ss_pred             hHHHHHHHhc-----cCCCEEEEEec
Confidence            6555544433     34556666653

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.74  E-value=0.035  Score=54.11  Aligned_cols=70  Identities=10%  Similarity=-0.072  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc-H-HHHHhCCCcee---cChhhHhhcCCCEEEEecCchh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS-P-AVRQQLNAPFF---ADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~-~-~~a~~~g~~~~---~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      .++++|.|||.|.+|.+-++.|.+.|.+|+++|++... . +.+.+.++...   ....+ + .++|+||.|+....
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~-l-~~~~lVi~at~~~~   84 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETL-L-DSCWLAIAATDDDT   84 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGG-G-TTCSEEEECCSCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccc-c-CCccEEEEcCCCHH
Confidence            45789999999999999999999999999999986543 2 22222344332   12233 3 68999999987764

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.72  E-value=0.0047  Score=54.23  Aligned_cols=35  Identities=29%  Similarity=0.378  Sum_probs=31.6

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ++|.|.| .|.+|..+++.|.+.|++|++.+|+++.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~   37 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQAD   37 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence            4799998 5999999999999999999999998754

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=95.72  E-value=0.0063  Score=55.70  Aligned_cols=66  Identities=17%  Similarity=0.192  Sum_probs=44.8

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecCh---hhHhhc--CCCEEEEecC
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADL---NDLCEL--HPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~---~~~~~~--~aDvVIlavp   97 (335)
                      ||+|.|.| .|.+|+.++..|.+.|++|++++|+..........++..    ..+.   .+++ +  ++|+||-+..
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~~d~vih~a~   76 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVF-TQENIEAVMHFAA   76 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHH-HHSCEEEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHH-hhcCCCEEEECCc
Confidence            47899998 699999999999999999999998764321111113321    1222   2333 4  7999998764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.71  E-value=0.022  Score=53.70  Aligned_cols=35  Identities=14%  Similarity=0.394  Sum_probs=32.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      +..+|.|||+|.+|+.++.+|...|. +++++|.+.
T Consensus       117 ~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          117 KNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            46799999999999999999999997 899999875

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=95.71  E-value=0.015  Score=53.26  Aligned_cols=69  Identities=22%  Similarity=0.294  Sum_probs=45.0

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcC--CeEEEEcCCCC--cHHHHHh----CCCce----ecC---hhhHhhcCCCEE
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHH--HTLLVHSRSDH--SPAVRQQ----LNAPF----FAD---LNDLCELHPDVV   92 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G--~~V~~~dr~~~--~~~~a~~----~g~~~----~~~---~~~~~~~~aDvV   92 (335)
                      |+.|||.|.| .|.+|+.++..|.+.|  ++|++.+|++.  ..+...+    .++..    ..+   ..+++ .++|+|
T Consensus         1 M~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~d~v   79 (336)
T 2hun_A            1 MHSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELV-RKVDGV   79 (336)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHH-HTCSEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHh-hCCCEE
Confidence            3468999999 6999999999999986  89999998752  1221111    12211    122   23344 679999


Q ss_pred             EEecCc
Q 044593           93 LLSTSI   98 (335)
Q Consensus        93 Ilavp~   98 (335)
                      |-+...
T Consensus        80 ih~A~~   85 (336)
T 2hun_A           80 VHLAAE   85 (336)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            987643

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=95.70  E-value=0.0043  Score=58.05  Aligned_cols=86  Identities=21%  Similarity=0.171  Sum_probs=54.5

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeE---EEE-cCCCC--cHHHHHhCCCceec-ChhhHhhcCCCEEEEecCchhHHH
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTL---LVH-SRSDH--SPAVRQQLNAPFFA-DLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V---~~~-dr~~~--~~~~a~~~g~~~~~-~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      |||+|+| .|.+|..+.+.|.+.++++   ..+ ++...  ... .....+.... +..+  + ++|+||.|+|.....+
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~-~~g~~i~v~~~~~~~--~-~~DvV~~a~g~~~s~~   76 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLA-FRGEEIPVEPLPEGP--L-PVDLVLASAGGGISRA   76 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEE-ETTEEEEEEECCSSC--C-CCSEEEECSHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEE-EcCceEEEEeCChhh--c-CCCEEEECCCccchHH
Confidence            6899999 9999999999998777642   222 21110  010 0000111111 2221  2 6999999999888777


Q ss_pred             HHhhccccccCCccEEEEcCCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ....+    ++.|+.|+|.++-
T Consensus        77 ~a~~~----~~~G~~vId~s~~   94 (331)
T 2yv3_A           77 KALVW----AEGGALVVDNSSA   94 (331)
T ss_dssp             HHHHH----HHTTCEEEECSSS
T ss_pred             HHHHH----HHCCCEEEECCCc
Confidence            77655    4568899999875

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.70  E-value=0.018  Score=53.51  Aligned_cols=89  Identities=15%  Similarity=0.083  Sum_probs=61.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCcee-----cChhhHh----hcCCCEEEEecCc-
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLC----ELHPDVVLLSTSI-   98 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~----~~~aDvVIlavp~-   98 (335)
                      .+.+|.|+|+|.+|...+..++..|. +|++.+++++..+.++++ ....     .+..+.+    ...+|+||-++.. 
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~  242 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNE  242 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCH
Confidence            56799999999999999999999999 999999998777666665 4321     1222221    0258999999876 


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..+...++.+     +++..++.++.
T Consensus       243 ~~~~~~~~~l-----~~~G~iv~~g~  263 (343)
T 2dq4_A          243 AAIHQGLMAL-----IPGGEARILGI  263 (343)
T ss_dssp             HHHHHHHHHE-----EEEEEEEECCC
T ss_pred             HHHHHHHHHH-----hcCCEEEEEec
Confidence            3344444443     34556666654

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.69  E-value=0.0074  Score=51.26  Aligned_cols=34  Identities=21%  Similarity=0.444  Sum_probs=30.9

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      +|||.|.| .|.+|..+++.|. .|++|++.+|++.
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~   37 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG   37 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc
Confidence            46899998 6999999999999 9999999999865

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.69  E-value=0.016  Score=58.18  Aligned_cols=35  Identities=14%  Similarity=0.357  Sum_probs=32.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      +..||.|||+|.+|+.+|..|...|. +++++|.+.
T Consensus       325 ~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          325 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            46799999999999999999999997 899999875

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=95.67  E-value=0.011  Score=53.14  Aligned_cols=61  Identities=18%  Similarity=0.304  Sum_probs=44.0

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhc--CCCEEEEecCc
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCEL--HPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~--~aDvVIlavp~   98 (335)
                      ...++|.|.| .|.+|+.++..|.+.|++|++++|+.-        .+....+..+++ +  ++|+||-+...
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--------Dl~d~~~~~~~~-~~~~~d~vih~A~~   73 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDL--------DITNVLAVNKFF-NEKKPNVVINCAAH   73 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTC--------CTTCHHHHHHHH-HHHCCSEEEECCCC
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccC--------CCCCHHHHHHHH-HhcCCCEEEECCcc
Confidence            3568999998 699999999999999999999998731        111112233444 4  69999987643

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.66  E-value=0.014  Score=52.87  Aligned_cols=64  Identities=19%  Similarity=0.173  Sum_probs=44.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecC--hhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FAD--LNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~--~~~~~~~~aDvVIlavp   97 (335)
                      |||.|.|. |.+|+.++..|.+.|++|++++|++.........++..    ..+  ..+++ .. |+||-+..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGI-KG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTC-CC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhc-CC-CEEEECCC
Confidence            68999995 99999999999999999999999875432222223321    111  22333 34 99987654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.64  E-value=0.019  Score=53.42  Aligned_cols=90  Identities=13%  Similarity=0.104  Sum_probs=62.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec---ChhhHhh-----cCCCEEEEecCchh
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA---DLNDLCE-----LHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~---~~~~~~~-----~~aDvVIlavp~~~  100 (335)
                      .+.+|.|+| .|.+|...+..++..|.+|++. ++++..+.++++|.....   +..+.+.     ..+|+||-|+....
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  228 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGGPV  228 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHHHHTTSCEEEEEESSCTHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHHHhcCCCceEEEECCCcHH
Confidence            568999999 7999999999999999999988 777777777777765321   1111110     25888888888654


Q ss_pred             HHHHHhhccccccCCccEEEEcCCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ....+..+     +++..++.++..
T Consensus       229 ~~~~~~~l-----~~~G~iv~~g~~  248 (343)
T 3gaz_A          229 LDASFSAV-----KRFGHVVSCLGW  248 (343)
T ss_dssp             HHHHHHHE-----EEEEEEEESCCC
T ss_pred             HHHHHHHH-----hcCCeEEEEccc
Confidence            55544443     345566666543

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=95.64  E-value=0.015  Score=53.85  Aligned_cols=64  Identities=23%  Similarity=0.362  Sum_probs=44.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcC--CCCcHH-----H--HH-hCC--Ccee--cC-hhhHhhcCCCEEE
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARHHH--TLLVHSR--SDHSPA-----V--RQ-QLN--APFF--AD-LNDLCELHPDVVL   93 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr--~~~~~~-----~--a~-~~g--~~~~--~~-~~~~~~~~aDvVI   93 (335)
                      |||+|+|+ |.+|+.++..|...|+  ++.++|+  +++..+     .  .. ..+  +...  ++ +.+.+ +++|+||
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al-~gaD~Vi   79 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRII-DESDVVI   79 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGG-TTCSEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHh-CCCCEEE
Confidence            69999998 9999999999998885  6899998  643221     1  11 111  1221  22 35556 8999999


Q ss_pred             Eec
Q 044593           94 LST   96 (335)
Q Consensus        94 lav   96 (335)
                      ++.
T Consensus        80 ~~A   82 (313)
T 1hye_A           80 ITS   82 (313)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            976

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.63  E-value=0.027  Score=53.44  Aligned_cols=48  Identities=15%  Similarity=0.050  Sum_probs=42.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAP   76 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~   76 (335)
                      ..+.+|.|+|+|.+|...+..++..|. .|++.|++++..+.++++|+.
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~  232 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE  232 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc
Confidence            356799999999999999999888998 799999999888888888874

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.63  E-value=0.016  Score=53.89  Aligned_cols=90  Identities=12%  Similarity=0.022  Sum_probs=59.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---c--ChhhHhh-----cCCCEEEEecCc
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---A--DLNDLCE-----LHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~--~~~~~~~-----~~aDvVIlavp~   98 (335)
                      ...+|.|+|. |.+|...+..++..|++|++.+++++..+.+++.|....   .  +..+.+.     ...|+||-++..
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  245 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTGA  245 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCCH
Confidence            5689999998 999999999999999999999999877776766665321   1  1111110     146777777764


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ......++.+     +++..++.+++
T Consensus       246 ~~~~~~~~~l-----~~~G~~v~~g~  266 (343)
T 2eih_A          246 LYFEGVIKAT-----ANGGRIAIAGA  266 (343)
T ss_dssp             SSHHHHHHHE-----EEEEEEEESSC
T ss_pred             HHHHHHHHhh-----ccCCEEEEEec
Confidence            4444444433     23445555554

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=95.62  E-value=0.018  Score=55.93  Aligned_cols=48  Identities=10%  Similarity=0.174  Sum_probs=41.9

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP   76 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~   76 (335)
                      ..+.+|.|+|+ |.+|...+..++..|.+|++.+++++..+.++++|+.
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~  275 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAE  275 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCc
Confidence            35678999997 9999999999999999999999888888888888874

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.60  E-value=0.0042  Score=55.60  Aligned_cols=63  Identities=22%  Similarity=0.263  Sum_probs=45.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc----eecC---hhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP----FFAD---LNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~----~~~~---~~~~~~~~aDvVIlav   96 (335)
                      ++++|.|.| .|.||..++..|.+.|++|++.+|++....   ..++.    ..++   ..+++ +++|+||.+.
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~~Dl~d~~~~~~~~-~~~D~vi~~A   72 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA---GPNEECVQCDLADANAVNAMV-AGCDGIVHLG   72 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC---CTTEEEEECCTTCHHHHHHHH-TTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc---CCCCEEEEcCCCCHHHHHHHH-cCCCEEEECC
Confidence            456789999 799999999999999999999999975432   11221    1122   33445 6899999875

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.60  E-value=0.021  Score=53.12  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHH--cCCeEEEEcCCCC
Q 044593           28 KSTSLKIAVIG-FGNFGQFLAKAFAR--HHHTLLVHSRSDH   65 (335)
Q Consensus        28 ~~~~~kI~IIG-~G~mG~siA~~L~~--~G~~V~~~dr~~~   65 (335)
                      .+++|+|.|.| .|.+|+.++..|.+  .|++|++++|++.
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            35678999998 69999999999999  8999999999764

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=95.59  E-value=0.022  Score=50.99  Aligned_cols=41  Identities=20%  Similarity=0.257  Sum_probs=35.3

Q ss_pred             cCCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593           27 VKSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP   67 (335)
Q Consensus        27 ~~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~   67 (335)
                      ..+++++|.|.| .|.||..+++.|.+.|++|++.+|+++..
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~   68 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGL   68 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHH
Confidence            445678899998 69999999999999999999999987543

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.58  E-value=0.015  Score=53.77  Aligned_cols=90  Identities=12%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---c--Chhh-H---h-hcCCCEEEEecCc
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---A--DLND-L---C-ELHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~--~~~~-~---~-~~~aDvVIlavp~   98 (335)
                      .+.+|.|+|. |.+|..++..++..|++|++.+++++..+.+++.|....   .  +..+ +   . ....|++|-|+..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~  224 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGK  224 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcH
Confidence            4678999994 999999999999999999999999877776766665421   1  1111 1   1 0247888888876


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ......++.+     +++..++.++.
T Consensus       225 ~~~~~~~~~l-----~~~G~iv~~g~  245 (333)
T 1wly_A          225 DTLQKSLDCL-----RPRGMCAAYGH  245 (333)
T ss_dssp             TTHHHHHHTE-----EEEEEEEECCC
T ss_pred             HHHHHHHHhh-----ccCCEEEEEec
Confidence            4444444433     34556666654

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.58  E-value=0.018  Score=50.18  Aligned_cols=41  Identities=12%  Similarity=0.204  Sum_probs=34.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcC--CeEEEEcCCCCcHHHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHH--HTLLVHSRSDHSPAVR   70 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~~a   70 (335)
                      ++++|.|.| .|.||..+++.|.+.|  ++|++.+|+++..+..
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l   45 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL   45 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHH
Confidence            457888998 6999999999999999  9999999987654433

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.57  E-value=0.045  Score=50.64  Aligned_cols=92  Identities=10%  Similarity=0.083  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCe-EEEEcCCCCcHHHHHhCCCcee-----cChhhHh-----hcCCCEEEEecC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHT-LLVHSRSDHSPAVRQQLNAPFF-----ADLNDLC-----ELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~-V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~-----~~~aDvVIlavp   97 (335)
                      ..+.+|.|+|+|.+|...+..++..|.. +++.|++++..+.++++|....     .+..+..     ....|+|+-++.
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G  238 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAG  238 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSC
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCccccccccc
Confidence            3568999999999999999999999975 5788999888888999997532     1222211     035788888886


Q ss_pred             chh-HHHHHhhccccccCCccEEEEcCCC
Q 044593           98 ILS-TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        98 ~~~-~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ... +...++-     ++++..++-++..
T Consensus       239 ~~~~~~~~~~~-----l~~~G~~v~~g~~  262 (346)
T 4a2c_A          239 VPQTVELAVEI-----AGPHAQLALVGTL  262 (346)
T ss_dssp             SHHHHHHHHHH-----CCTTCEEEECCCC
T ss_pred             ccchhhhhhhe-----ecCCeEEEEEecc
Confidence            543 3333333     3455556555543

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=95.55  E-value=0.01  Score=55.53  Aligned_cols=53  Identities=17%  Similarity=0.318  Sum_probs=41.3

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |||.|.| .|.+|+.++..|.+.|+ +|+..|++.+.            .++.+++ +++|+||-+..
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~------------~~l~~~~-~~~d~Vih~a~   55 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKE------------EELESAL-LKADFIVHLAG   55 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCH------------HHHHHHH-HHCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCH------------HHHHHHh-ccCCEEEECCc
Confidence            7899999 79999999999999999 99999995111            1123444 57899998754

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.51  E-value=0.045  Score=50.90  Aligned_cols=88  Identities=10%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             CeEEEE-cccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-----cChhhHhh-----cCCCEEEEecCchh
Q 044593           32 LKIAVI-GFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLCE-----LHPDVVLLSTSILS  100 (335)
Q Consensus        32 ~kI~II-G~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~~-----~~aDvVIlavp~~~  100 (335)
                      .+|.|. |.|.+|...+..++..|.+|++.+++++..+.++++|....     .+..+.+.     ..+|+||-|+....
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~~~  245 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGPL  245 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCChh
Confidence            456555 79999999999999999999999999988888888886421     11111110     26888888887665


Q ss_pred             HHHHHhhccccccCCccEEEEcCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ....++.     ++++..++.++.
T Consensus       246 ~~~~~~~-----l~~~G~iv~~G~  264 (349)
T 3pi7_A          246 ASAIFNA-----MPKRARWIIYGR  264 (349)
T ss_dssp             HHHHHHH-----SCTTCEEEECCC
T ss_pred             HHHHHhh-----hcCCCEEEEEec
Confidence            5444433     445666666653

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.48  E-value=0.019  Score=54.86  Aligned_cols=44  Identities=27%  Similarity=0.301  Sum_probs=33.6

Q ss_pred             chhhcccCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           21 QLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        21 ~~~~~~~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ++..+...|.++||+|+|.|..|..++.++++.|++|+++| ++.
T Consensus        14 ~~~~~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~   57 (403)
T 3k5i_A           14 NLYFQGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADN   57 (403)
T ss_dssp             -------CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STT
T ss_pred             ceeEeccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCC
Confidence            45566565668899999999999999999999999999999 653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	335
d2pv7a2	152	c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {	3e-12
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	2e-11
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	1e-08
d3cuma2	162	c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase	2e-08
d2pv7a1	128	a.100.1.12 (A:244-371) Prephenate dehydrogenase Ty	1e-07
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	4e-07
d2g5ca2	171	c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {	1e-06
d1n1ea2	189	c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen	2e-05
d2i76a2	153	c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The	3e-05
d1i36a2	152	c.2.1.6 (A:1-152) Conserved hypothetical protein M	4e-05
d1txga2	180	c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen	2e-04
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	2e-04
d1lc0a1	172	c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {	2e-04
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	4e-04
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	6e-04
d2pgda2	176	c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase	0.001

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

 Score = 61.4 bits (148), Expect = 3e-12
 Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 26/172 (15%)

Query: 27  VKSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLC 85
           + S   KI ++G +G  G   A+      + + +    D       +        +    
Sbjct: 5   INSDIHKIVIVGGYGKLGGLFARYLRASGYPISIL---DREDWAVAESILANADVVIVSV 61

Query: 86  ELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC 145
            ++  +  +                  L  + L  D+ SVK  P    L+        L 
Sbjct: 62  PINLTLETIER------------LKPYLTENMLLADLTSVKREPLAKMLEVHTGAV--LG 107

Query: 146 THPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVE 197
            HPMFG + A  + + +         G   ER    +  L+     G ++ +
Sbjct: 108 LHPMFGADIASMAKQVVVRC-----DGRFPER---YEWLLEQIQIWGAKIYQ 151

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 10/162 (6%)

Query: 32  LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDV 91
           +K+  IG G  G+ ++K   +  ++L+V  R+  + A      A   +    + E    +
Sbjct: 1   MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI 60

Query: 92  VLLSTSILSTQSVLKSI--PFQRLKRSTLFVDVLSV-KEFPRNLFLKYLPQDFDILCTHP 148
           + +  +    + V        +  K  T+ +D+ S+     R +      +  ++L    
Sbjct: 61  ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPV 120

Query: 149 MFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAK 190
             G   A      L  M     +G D+    +    +   A 
Sbjct: 121 SGGEPKAID--GTLSVM-----VGGDKAIFDKYYDLMKAMAG 155

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 51.7 bits (122), Expect = 1e-08
 Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 8/167 (4%)

Query: 33  KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVV 92
           KI V+G G  G  LA    R  H L+  SR   +     +      A  +        ++
Sbjct: 2   KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKII 61

Query: 93  LLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDI--LCTHPMF 150
            L T I              L  + +  DV SVK        +          +      
Sbjct: 62  FLCTPIQLILPT-LEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQ 120

Query: 151 GPESA-KSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMV 196
           G + A ++ + N P++        D E++  +          G ++ 
Sbjct: 121 GIDGAEENLFVNAPYVLTPTE-YTDPEQLACLRSV---LEPLGVKIY 163

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 10/161 (6%)

Query: 33  KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVV 92
           +IA IG G+ G  +A    +  + L V      +        A       D  +    V+
Sbjct: 3   QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 62

Query: 93  LLSTSILSTQSVLKSIP--FQRLKRSTLFVDVLSVK-EFPRNLFLKYLPQDFDILCTHPM 149
            +  +    + +          +   TL ++  ++     R +      +   +L     
Sbjct: 63  SMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVS 122

Query: 150 FGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAK 190
            G   A      L FM     +G D E +++     +   +
Sbjct: 123 GGTAGAA--AGTLTFM-----VGGDAEALEKARPLFEAMGR 156

>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 128

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: TyrA dimerization domain-like
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 202 DHDKYAAGSQFVTH----TMGRVLERFGVES---SPINTKGYETLLDLVDNTKGDSFDLY 254
           +HD      Q + H      G  L +  +       +++  Y   L ++        +LY
Sbjct: 4   EHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMIGRLFAQDAELY 63

Query: 255 YGLFMYNKNSLEQLQRLEMAFESIKQQL 282
             + M    +L  ++ L+  ++      
Sbjct: 64  ADIIMDKSENLAVIETLKQTYDEALTFF 91

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 21/172 (12%), Positives = 47/172 (27%), Gaps = 19/172 (11%)

Query: 31  SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD-----------HSPAVRQQLNAPFFA 79
           S+ + V+G G  G  LA   A     + V +R+             +P            
Sbjct: 1   SMDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETME 60

Query: 80  DLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ 139
                 +     ++L  +  +T S ++ +     K   L     +  +       +    
Sbjct: 61  AFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAA 120

Query: 140 DFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKE 191
               L      G    + + +   F       G      + +   ++  A +
Sbjct: 121 GLRFLGMGISGGE---EGARKGPAFF-----PGGTLSVWEEIRPIVEAAAAK 164

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 11/173 (6%)

Query: 33  KIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSP--AVRQQLNAPFFADLNDLCELH 88
            + ++G G  G   AK+  R      +  +  +  S   AV   +       +  + +  
Sbjct: 3   NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFS 62

Query: 89  PDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNL--FLKYLPQDFDILCT 146
           PD V+LS+ + + + + K + +   + +T+        +   +L   L         +  
Sbjct: 63  PDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAG 122

Query: 147 HPMFGPESAKSS-WENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEM 198
               G E +  + +E    +    +   D++R+K V +    +   G  +  M
Sbjct: 123 TEKSGVEYSLDNLYEGKKVILTPTK-KTDKKRLKLVKRV---WEDVGGVVEYM 171

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 27/179 (15%), Positives = 51/179 (28%), Gaps = 26/179 (14%)

Query: 33  KIAVIGFGNFGQFLAKAFARHHHTLLVHSRS--------------DHSPAVRQQLNAPFF 78
           K  V G G FG  LA   ++    + V   +                   V+   N  F 
Sbjct: 9   KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT 68

Query: 79  ADLNDLCELHPDVVLLSTSILSTQSVLKSI---PFQRLKRSTLFVDVLSVKEFPRNLFLK 135
           +D+        +++L        +   +          K   + V V + K   R+    
Sbjct: 69  SDVEKAYN-GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCT-KGIERSTLKF 126

Query: 136 YLPQDFDILCTHP---MFGPESAKSSWENLPFMYDKVRIG-NDEERIKRVDKFLDVFAK 190
                 + L +     + GP  A      +      V I   D    +R+ + +    +
Sbjct: 127 PAEIIGEFLPSPLLSVLAGPSFAIEVATGVF---TCVSIASADINVARRLQRIMSTGDR 182

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 23/166 (13%), Positives = 43/166 (25%), Gaps = 17/166 (10%)

Query: 34  IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVL 93
           +  +G G   +F  +     +    + SRS        ++     A L    E    VV 
Sbjct: 2   LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPE-LNGVVF 60

Query: 94  LSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPE 153
           +       ++V   +           V V         +F K                 E
Sbjct: 61  VIVPDRYIKTVANHLNLGD------AVLVHCSGFLSSEIFKKSGRASIHPN--FSFSSLE 112

Query: 154 SAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS 199
            A    + + F      +  DE  +  V K  +       +   + 
Sbjct: 113 KALEMKDQIVFG-----LEGDERGLPIVKKIAEEI---SGKYFVIP 150

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 10/63 (15%), Positives = 18/63 (28%)

Query: 32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDV 91
          L++  IGFG   Q LA         ++          + +           +     P V
Sbjct: 1  LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVV 60

Query: 92 VLL 94
          +  
Sbjct: 61 ISA 63

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 20/171 (11%), Positives = 45/171 (26%), Gaps = 21/171 (12%)

Query: 33  KIAVIGFGNFGQFLAKAFARH-HHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDV 91
            ++++G G  G  L+     + +   +  +  D                   L  +    
Sbjct: 2   IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFW 61

Query: 92  VLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHP--- 148
                  L    V+            +   +  +K+    L  K L    + + T P   
Sbjct: 62  PEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAV 121

Query: 149 -------------MFGPESAKSSWENLPFMYDKVRIGN-DEERIKRVDKFL 185
                        + GP  A+   + +P     V   +  E    ++ +  
Sbjct: 122 WRLKHDLRERTVAITGPAIAREVAKRMP---TTVVFSSPSESSANKMKEIF 169

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 10/40 (25%), Positives = 13/40 (32%)

Query: 33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ 72
          KI V+G G  GQ    A  +  H +    R          
Sbjct: 2  KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNL 41

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 9/59 (15%), Positives = 15/59 (25%)

Query: 28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCE 86
           S    + V+G G  G    +          ++     S      L+      L D   
Sbjct: 4  NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALR 62

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH 65
          S   AV+G GN G   A   A    ++L       
Sbjct: 1  SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ 35

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 33 KIAVI-GFGNFGQFLAKAFARHHHTLLVHSRS 63
          ++A++ G GN G+ LA   A   H ++V SR 
Sbjct: 2  RVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 17/170 (10%), Positives = 41/170 (24%), Gaps = 22/170 (12%)

Query: 33  KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLN---------- 82
            IA+IG    GQ L      H   +      + + +      A                 
Sbjct: 4   DIALIGLAVMGQNLILNMNDHGFVVCAF---NRTVSKVDDFLANEAKGTKVLGAHSLEEM 60

Query: 83  -DLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDF 141
               +    ++LL  +  +  + ++ +         +     S              +  
Sbjct: 61  VSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI 120

Query: 142 DILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKE 191
             + +    G +         P +      G ++E    +       A +
Sbjct: 121 LFVGSGVSGGED----GARYGPSLM----PGGNKEAWPHIKAIFQGIAAK 162

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	335
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.95
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.94
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.91
d2g5ca1	110	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.88
d2f1ka1	114	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.87
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.81
d2pv7a1	128	Prephenate dehydrogenase TyrA {Haemophilus influen	99.81
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.79
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.79
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.77
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.7
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.68
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.67
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.64
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.62
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.54
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.52
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.52
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.51
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.49
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.43
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.25
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.24
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.99
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.95
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.94
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.91
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.86
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.85
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.84
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.77
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	98.7
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.58
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.55
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.53
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.5
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.5
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.48
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.45
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.44
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.43
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.42
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.4
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.39
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.39
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.35
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.34
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.32
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.23
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.22
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	98.21
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.21
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.21
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.2
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.18
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.16
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.15
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.15
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.13
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.09
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.09
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.07
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.07
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.07
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	98.06
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.02
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.02
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.99
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.98
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.95
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.93
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.93
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.92
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.92
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.91
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.88
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	97.88
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.88
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.87
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.86
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	97.8
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.77
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.76
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.75
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.74
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.7
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.7
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.7
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	97.68
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.65
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.64
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.61
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.59
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.58
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.56
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.52
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.52
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.51
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.49
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.45
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.45
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.39
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.39
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	97.38
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.37
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.36
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.36
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.35
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.32
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	97.3
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.28
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.25
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.23
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.16
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.13
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.12
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.07
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.05
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.0
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.93
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.92
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.92
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.88
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.87
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.84
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.83
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.81
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	96.8
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.8
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.79
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.76
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.75
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.74
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.7
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.68
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	96.67
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.65
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.64
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.61
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.59
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.55
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.45
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.41
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.35
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.35
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.32
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.24
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.18
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.17
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.14
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.14
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.11
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.06
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.04
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.02
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.99
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.98
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.97
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.94
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.92
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.89
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.88
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.87
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.85
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.83
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.82
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.74
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.71
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.7
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	95.69
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.67
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.66
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.62
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.61
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.6
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.58
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.56
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.53
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.52
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.49
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.49
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.46
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.46
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.43
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	95.34
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.33
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.32
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.2
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.2
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.2
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.12
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.09
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.09
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	95.07
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.04
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.89
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.89
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.87
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.84
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	94.72
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.62
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.62
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.45
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	94.43
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.43
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.36
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.34
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.32
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.26
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	94.17
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	94.13
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.09
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	94.07
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.03
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	94.01
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.0
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	93.98
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.9
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.89
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.87
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.84
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.83
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.77
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	93.77
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	93.71
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	93.69
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.67
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	93.51
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.49
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.41
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	93.38
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.38
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.35
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.33
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	93.33
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	93.32
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	93.29
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.28
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.23
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.23
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	93.22
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	93.19
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	93.14
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.14
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	93.12
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.11
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.11
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.07
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.03
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.02
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	92.93
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	92.91
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.88
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.87
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	92.8
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.76
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.75
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	92.74
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.71
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.69
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	92.66
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.58
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.46
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.4
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	92.36
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	92.35
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.33
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.1
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.09
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	92.08
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	92.05
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	92.03
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.98
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.97
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.95
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	91.9
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	91.81
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.61
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	91.52
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.49
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.31
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.29
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	91.28
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.19
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.19
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	91.08
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.03
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	90.93
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.88
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	90.79
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	90.77
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	90.71
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	90.68
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	90.66
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	90.61
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.56
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.54
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	90.33
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	90.33
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.24
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	90.17
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.17
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	90.16
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	89.94
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	89.9
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	89.78
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	89.73
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	89.73
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	89.64
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	89.62
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	89.61
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.55
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	89.53
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	89.39
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.28
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	89.25
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	89.22
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	89.12
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.08
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	89.05
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	88.93
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.92
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.81
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	88.79
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	88.77
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	88.74
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	88.59
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.46
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	88.28
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	87.95
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	87.89
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.71
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	87.64
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	87.6
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	87.35
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	86.88
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	86.88
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	86.75
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	86.7
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	86.64
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	86.63
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	86.26
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	85.95
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	85.93
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	85.8
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	85.74
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	85.62
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	85.47
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	84.74
d1ydga_	201	Trp repressor binding protein WrbA {Deinococcus ra	84.57
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	83.97
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	83.58
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.36
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	83.26
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	83.15
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.14
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	83.09
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	82.32
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	82.05
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	82.0
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	81.99
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.26
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	81.22
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	80.74
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	80.69
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	80.62
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	80.22
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.12

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.95  E-value=1.4e-27  Score=202.82  Aligned_cols=161  Identities=19%  Similarity=0.228  Sum_probs=134.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhCCCc--eecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLNAP--FFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~g~~--~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      |+||+|||+|+||+++|++|++.|+  +|++||++++..+.+++.|..  ..++.......++|+||+|+|+..+.++++
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~   80 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhh
Confidence            4579999999999999999999996  799999999988889998874  244444432147999999999999999999


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc------ccccCCCcceecccccCCChhHHHH
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGNDEERIKR  180 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~~~~~~~  180 (335)
                      ++. +.++++++|+|++|+|..+.+.+.+.++.  +|+++|||+|++.+      +++|.|.+++++|    ....+.+.
T Consensus        81 ~l~-~~~~~~~ii~d~~s~k~~~~~~~~~~~~~--~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p----~~~~~~~~  153 (171)
T d2g5ca2          81 KLS-YILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTP----TKKTDKKR  153 (171)
T ss_dssp             HHH-HHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSSTTTTCEEEECC----CSSSCHHH
T ss_pred             hhh-ccccccccccccccccHHHHHHHHHhhcc--cccccccccccccccHHHHHHHhhCCCeEEEec----CCCCCHHH
Confidence            995 67899999999999999999888877654  69999999999863      3456777777764    44456778


Q ss_pred             HHHHHHHHHhcCCEEEEe
Q 044593          181 VDKFLDVFAKEGCRMVEM  198 (335)
Q Consensus       181 ~~~v~~l~~~~G~~v~~~  198 (335)
                      ++.++++|+.+|+++++|
T Consensus       154 ~~~v~~~~~~lG~~v~~M  171 (171)
T d2g5ca2         154 LKLVKRVWEDVGGVVEYM  171 (171)
T ss_dssp             HHHHHHHHHHTTCEEEEC
T ss_pred             HHHHHHHHHHcCCEEEeC
Confidence            899999999999999886

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.94  E-value=2.2e-26  Score=194.62  Aligned_cols=158  Identities=20%  Similarity=0.261  Sum_probs=130.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc-eecChhhHhhcCCCEEEEecCchhHHHHHhhccc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP-FFADLNDLCELHPDVVLLSTSILSTQSVLKSIPF  110 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~-~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~  110 (335)
                      |||+|||+|+||+++|+.|+++|++|++|||+++..+.+.+.|.. ...+..+.+ +++|+||+|+|+..+.++++++. 
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~-~~~DiIilavp~~~~~~vl~~l~-   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLI-   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHHHHHG-
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccc-cccccccccCcHhhhhhhhhhhh-
Confidence            799999999999999999999999999999999888888888864 233334455 79999999999999999999995 


Q ss_pred             cccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCc------ccccCCCcceecccccCCChhHHHHHHHH
Q 044593          111 QRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESA------KSSWENLPFMYDKVRIGNDEERIKRVDKF  184 (335)
Q Consensus       111 ~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~------~~~~~g~~~i~~~~~~~~~~~~~~~~~~v  184 (335)
                      +.++++++|+|++|+|..+...+.+..+   ++++.|||+|++.+      ++.|.+.++++++    ....+++.++.+
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~~~~~~~---~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~----~~~~~~~~~~~v  151 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTP----TEYTDPEQLACL  151 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHHHHHHST---TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEE----CTTCCHHHHHHH
T ss_pred             hhcccccceeeccccchHHHHHHHHhhc---ccccceeeecccccchhhhcccccCCCeEEEEe----CCCCCHHHHHHH
Confidence            7899999999999999888888777653   58999999998764      2345566666643    334456788999


Q ss_pred             HHHHHhcCCEEEEe
Q 044593          185 LDVFAKEGCRMVEM  198 (335)
Q Consensus       185 ~~l~~~~G~~v~~~  198 (335)
                      +++|+.+|++++.+
T Consensus       152 ~~l~~~lG~~v~~c  165 (165)
T d2f1ka2         152 RSVLEPLGVKIYLC  165 (165)
T ss_dssp             HHHHGGGTCEEEEC
T ss_pred             HHHHHHhCCEEEeC
Confidence            99999999998763

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.91  E-value=4e-24  Score=178.23  Aligned_cols=147  Identities=24%  Similarity=0.370  Sum_probs=122.3

Q ss_pred             cCCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           27 VKSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        27 ~~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      .+..++||+||| +|+||+++|+.|+++||+|.+||+++....             ...+ .++|++++|+|...+..++
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~-------------~~~~-~~~~~v~~~~~~~~~~~v~   70 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA-------------ESIL-ANADVVIVSVPINLTLETI   70 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH-------------HHHH-TTCSEEEECSCGGGHHHHH
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc-------------chhh-hhccccccccchhhheeee
Confidence            456788999999 999999999999999999999999875432             2344 7899999999999999999


Q ss_pred             hhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHH
Q 044593          106 KSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFL  185 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~  185 (335)
                      .++. +.++++++|+|++|+|..+.+.+.+.++.  +|+++|||+||+.+.  +.+...++++   +.+   .+.++++.
T Consensus        71 ~~~~-~~~~~~~iiiD~~Svk~~~~~~~~~~~~~--~~v~~hP~~Gp~~~~--~~g~~~v~~~---g~~---~~~~~~~~  139 (152)
T d2pv7a2          71 ERLK-PYLTENMLLADLTSVKREPLAKMLEVHTG--AVLGLHPMFGADIAS--MAKQVVVRCD---GRF---PERYEWLL  139 (152)
T ss_dssp             HHHG-GGCCTTSEEEECCSCCHHHHHHHHHHCSS--EEEEEEECSCTTCSC--CTTCEEEEEE---EEC---GGGTHHHH
T ss_pred             eccc-ccccCCceEEEecccCHHHHHHHHHHccC--CEEEecccCCCcccc--cCCcEEEEec---CCC---HHHHHHHH
Confidence            9985 78899999999999999999999887653  699999999999753  3566555543   222   34678899


Q ss_pred             HHHHhcCCEEEEe
Q 044593          186 DVFAKEGCRMVEM  198 (335)
Q Consensus       186 ~l~~~~G~~v~~~  198 (335)
                      ++|+.+|+++++.
T Consensus       140 ~ll~~~Ga~v~et  152 (152)
T d2pv7a2         140 EQIQIWGAKIYQT  152 (152)
T ss_dssp             HHHHHTTCEEEEC
T ss_pred             HHHHHhCCEEEeC
Confidence            9999999999863

>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: TyrA dimerization domain-like
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.88  E-value=8.4e-23  Score=160.90  Aligned_cols=95  Identities=12%  Similarity=0.148  Sum_probs=80.7

Q ss_pred             ChHHHHHHHHHhhhhHHHHHHHHHHc----CCC---CCCCCCcchhhHHHHHHHhhCCChHhHHHHHhhCHhH-HHHHHH
Q 044593          199 SCFDHDKYAAGSQFVTHTMGRVLERF----GVE---SSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNS-LEQLQR  270 (335)
Q Consensus       199 ~~~eHD~~~A~~s~lph~la~aL~~~----~~~---~~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N~~~-~~~l~~  270 (335)
                      +|++||+++|++||+||++|++|+..    ..+   ...++++||+|+|||    |++||+||+|||.+|+++ ++.|+.
T Consensus         1 SPeeHD~~~A~vSHlPHlia~al~~~~~~~~~~~~~~~~~agggfrD~TRi----A~s~p~mW~dI~~~N~~~i~~~l~~   76 (110)
T d2g5ca1           1 SPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFKDFTRI----AKSDPIMWRDIFLENKENVMKAIEG   76 (110)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGCCTTTGGGC-------CCSCHHHHHHHHHHTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcchHHHHHHcchhHHHHHHH----HcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999988642    222   235789999999998    999999999999999988 599999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          271 LEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       271 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      |++.|+.+++.|+++|.+.+.+ +|..+
T Consensus        77 ~~~~L~~~~~~l~~~D~~~l~~-~l~~a  103 (110)
T d2g5ca1          77 FEKSLNHLKELIVREAEEELVE-YLKEV  103 (110)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            9999999999999999999888 55544

>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: TyrA dimerization domain-like
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.87  E-value=2e-22  Score=159.91  Aligned_cols=95  Identities=16%  Similarity=0.223  Sum_probs=83.3

Q ss_pred             ChHHHHHHHHHhhhhHHHHHHHHHHcCC--CC-------CCCCCcchhhHHHHHHHhhCCChHhHHHHHhhCHhH-HHHH
Q 044593          199 SCFDHDKYAAGSQFVTHTMGRVLERFGV--ES-------SPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNS-LEQL  268 (335)
Q Consensus       199 ~~~eHD~~~A~~s~lph~la~aL~~~~~--~~-------~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N~~~-~~~l  268 (335)
                      +|++||+++|++||+||++|++|+....  ..       ..++++||+|+|||    +++||+||+|||..|+.+ ++.|
T Consensus         1 TPeeHD~~~A~iSHLPHlia~~l~~~~~~~~~~~~~~~~~~~ag~gfrD~tRi----A~s~p~mW~dI~~~N~~~i~~~l   76 (114)
T d2f1ka1           1 TPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRV----GGGNPELGTMMATYNQRALLKSL   76 (114)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTG----GGSCHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhhHHHHHHH----HccCHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999875422  11       13789999999998    899999999999999987 5999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhccCc
Q 044593          269 QRLEMAFESIKQQLFGQMFRVYRKELFGSA  298 (335)
Q Consensus       269 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~  298 (335)
                      +.|++.|+.+++.|+++|.+.+++ +|..+
T Consensus        77 ~~~~~~L~~l~~~l~~~d~~~l~~-~l~~a  105 (114)
T d2f1ka1          77 QDYRQHLDQLITLISNQQWPELHR-LLQQT  105 (114)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            999999999999999999999888 55544

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.81  E-value=2.4e-20  Score=156.74  Aligned_cols=155  Identities=19%  Similarity=0.264  Sum_probs=122.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHH---hh
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVL---KS  107 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl---~~  107 (335)
                      |||||||+|.||..+|+.|.++||+|++|||+++..+.+.+.+.....++.+++ +++|+||+|+|... +.+++   ..
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~-~~~d~ii~~v~~~~~v~~v~~~~~~   79 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIA-EQCDVIITMLPNSPHVKEVALGENG   79 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHH-HHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHH-hCCCeEEEEcCCHHHHHHHHhCCcc
Confidence            799999999999999999999999999999999888878888888888888888 89999999998654 56666   33


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD  186 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~  186 (335)
                      +. +.++++++|+|++++.......+.+.+ ..+.+|+.+ |+.|.....  ..|...++.    +++   ++.++++++
T Consensus        80 ~~-~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda-pv~gg~~~a--~~g~l~~~~----gG~---~~~~~~~~~  148 (161)
T d1vpda2          80 II-EGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDA-PVSGGEPKA--IDGTLSVMV----GGD---KAIFDKYYD  148 (161)
T ss_dssp             HH-HHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC-CEESHHHHH--HHTCEEEEE----ESC---HHHHHHHHH
T ss_pred             hh-hccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecc-cccCChhHH--hcCCeEEEE----cCC---HHHHHHHHH
Confidence            42 567899999999998876666665554 456889987 667655321  145444442    444   467889999


Q ss_pred             HHHhcCCEEEEe
Q 044593          187 VFAKEGCRMVEM  198 (335)
Q Consensus       187 l~~~~G~~v~~~  198 (335)
                      +|+.+|.+++++
T Consensus       149 il~~~~~~i~~~  160 (161)
T d1vpda2         149 LMKAMAGSVVHT  160 (161)
T ss_dssp             HHHTTEEEEEEE
T ss_pred             HHHHhcCceEEC
Confidence            999999888876

>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: TyrA dimerization domain-like
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.81  E-value=3.8e-20  Score=149.81  Aligned_cols=100  Identities=12%  Similarity=0.141  Sum_probs=83.7

Q ss_pred             ChHHHHHHHHHhhhhHHHHHHHHHHc----CCC---CCCCCCcchhhHHHHHHHhhCCChHhHHHHHhhCHhHHHHHHHH
Q 044593          199 SCFDHDKYAAGSQFVTHTMGRVLERF----GVE---SSPINTKGYETLLDLVDNTKGDSFDLYYGLFMYNKNSLEQLQRL  271 (335)
Q Consensus       199 ~~~eHD~~~A~~s~lph~la~aL~~~----~~~---~~~~~~~gf~~~~rl~~~ia~~~~~lw~~I~~~N~~~~~~l~~~  271 (335)
                      ++++||++||++|||||+++.+|+..    +.+   ...+++|+|+..++.+.||+++||+||.+|+..|+++++.|++|
T Consensus         1 da~eHD~~~A~ishLpH~~~~al~~~l~~~~~~~~~~~~~a~~~fr~~l~~~tRIa~~~p~lw~dI~~~N~~~~~~l~~~   80 (128)
T d2pv7a1           1 NATEHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMIGRLFAQDAELYADIIMDKSENLAVIETL   80 (128)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHHHHTSCHHHHHHHHC----CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhHHHHHccHhHhhHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHH
Confidence            68999999999999999999988653    222   12578999998888888889999999999999999989999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHhccCch
Q 044593          272 EMAFESIKQQLFGQMFRVYRKELFGSAE  299 (335)
Q Consensus       272 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~  299 (335)
                      ++.|+++++.|+++|.+.+++ +|..+.
T Consensus        81 ~~~l~~l~~~i~~~D~~~l~~-~~~~a~  107 (128)
T d2pv7a1          81 KQTYDEALTFFENNDRQGFID-AFHKVR  107 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence            999999999999999999988 566554

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.79  E-value=3e-19  Score=148.62  Aligned_cols=150  Identities=19%  Similarity=0.276  Sum_probs=116.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhccc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPF  110 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~  110 (335)
                      |||||||+|+||++++..|.++|++|++|+|+++..+ .+.+.|+....++.+++ +++|+||+|+|++.+.++++++  
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~-~~~dvIilavkp~~~~~vl~~l--   77 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLI-DQVDLVILGIKPQLFETVLKPL--   77 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHH-HTCSEEEECSCGGGHHHHHTTS--
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhh-hccceeeeecchHhHHHHhhhc--
Confidence            7999999999999999999999999999999987654 45667888888898888 8999999999999999998766  


Q ss_pred             cccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHh
Q 044593          111 QRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAK  190 (335)
Q Consensus       111 ~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~  190 (335)
                         +++++|+++.+..  ..+.+++.++.+.+++..+|..+...+    .|...+..     +...+++..+.++++|+.
T Consensus        78 ---~~~~~iis~~agi--~~~~l~~~l~~~~~ivr~mPN~~~~v~----~g~~~~~~-----~~~~~~~~~~~v~~l~~~  143 (152)
T d2ahra2          78 ---HFKQPIISMAAGI--SLQRLATFVGQDLPLLRIMPNMNAQIL----QSSTALTG-----NALVSQELQARVRDLTDS  143 (152)
T ss_dssp             ---CCCSCEEECCTTC--CHHHHHHHHCTTSCEEEEECCGGGGGT----CEEEEEEE-----CTTCCHHHHHHHHHHHHT
T ss_pred             ---ccceeEecccccc--cHHHHHhhhcccccchhhccchhhhcC----ccceEEEe-----CCCCCHHHHHHHHHHHHh
Confidence               3567888876553  346777777766789999987665543    23322321     222345678899999999


Q ss_pred             cCCEEEEeC
Q 044593          191 EGCRMVEMS  199 (335)
Q Consensus       191 ~G~~v~~~~  199 (335)
                      +| ++++++
T Consensus       144 ~G-~~~~v~  151 (152)
T d2ahra2         144 FG-STFDIS  151 (152)
T ss_dssp             TE-EEEECC
T ss_pred             CC-CEEEec
Confidence            99 577765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.79  E-value=2e-19  Score=151.12  Aligned_cols=157  Identities=15%  Similarity=0.156  Sum_probs=124.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhhcc
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIP  109 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~  109 (335)
                      |+||||||+|.||+.+|+.|.++||+|.+|||+++..+.+...+.....++.+.+ ..+|+|++|+|... ..+++....
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~-~~~diii~~v~~~~~~~~v~~~~~   79 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAV-QGADVVISMLPASQHVEGLYLDDD   79 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHH-TSCSEEEECCSCHHHHHHHHHSTT
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhc-cccCeeeecccchhhHHHHHhccc
Confidence            5789999999999999999999999999999999888778888888888888888 89999999999886 455654421


Q ss_pred             --ccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHH
Q 044593          110 --FQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLD  186 (335)
Q Consensus       110 --~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~  186 (335)
                        .+.+.++++|+|++++.......+.+.+ ..+.+|+.+ |+.|.....  ..|...++.    +++   .+.++++++
T Consensus        80 ~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~da-pv~Gg~~~a--~~G~l~~~~----gG~---~~~~~~~~~  149 (162)
T d3cuma2          80 GLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDA-PVSGGTAGA--AAGTLTFMV----GGD---AEALEKARP  149 (162)
T ss_dssp             CHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEESCHHHH--HHTCEEEEE----ESC---HHHHHHHHH
T ss_pred             cccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEec-ccccCcccc--ccCCeEEEe----cCC---HHHHHHHHH
Confidence              2457889999999999877766666655 356889986 888766432  256544543    444   456889999


Q ss_pred             HHHhcCCEEEEe
Q 044593          187 VFAKEGCRMVEM  198 (335)
Q Consensus       187 l~~~~G~~v~~~  198 (335)
                      +|+.+|.+++++
T Consensus       150 il~~~~~~v~~~  161 (162)
T d3cuma2         150 LFEAMGRNIFHA  161 (162)
T ss_dssp             HHHHHEEEEEEE
T ss_pred             HHHHHcCccEEC
Confidence            999999888876

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.77  E-value=1.6e-18  Score=144.00  Aligned_cols=150  Identities=17%  Similarity=0.198  Sum_probs=114.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC-CeEEEEcCCCCcHHH-HHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH-HTLLVHSRSDHSPAV-RQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G-~~V~~~dr~~~~~~~-a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      |||+|||+|+||++++..|.++| ++|++|||+++..+. +.+.|+...++.+++  .++|+||+|||+..+.++++++.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v--~~~Div~lavkP~~~~~v~~~l~   78 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPEL--HSDDVLILAVKPQDMEAACKNIR   78 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCC--CTTSEEEECSCHHHHHHHHTTCC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccc--cccceEEEecCHHHHHHhHHHHh
Confidence            79999999999999999998887 899999999877654 455788777776665  67999999999999999999884


Q ss_pred             ccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHH
Q 044593          110 FQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFA  189 (335)
Q Consensus       110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~  189 (335)
                          +.+.+|+++.+.  ...+.+++.++...+++.++|..+...+    .|...+..     .+...++..+.++++|+
T Consensus        79 ----~~~~~viS~~ag--~~~~~l~~~l~~~~~iir~mpn~p~~~~----~g~t~~~~-----~~~~~~~~~~~v~~l~~  143 (152)
T d1yqga2          79 ----TNGALVLSVAAG--LSVGTLSRYLGGTRRIVRVMPNTPGKIG----LGVSGMYA-----EAEVSETDRRIADRIMK  143 (152)
T ss_dssp             ----CTTCEEEECCTT--CCHHHHHHHTTSCCCEEEEECCGGGGGT----CEEEEEEC-----CTTSCHHHHHHHHHHHH
T ss_pred             ----hcccEEeecccC--CCHHHHHHHhCcCcceEeecccchhHhc----CCcEEEEe-----CCCCCHHHHHHHHHHHH
Confidence                246688877543  2347788888766678998888766654    34433331     23334566788999999


Q ss_pred             hcCCEEEEeC
Q 044593          190 KEGCRMVEMS  199 (335)
Q Consensus       190 ~~G~~v~~~~  199 (335)
                      .+| ++++++
T Consensus       144 ~~G-~~~~vd  152 (152)
T d1yqga2         144 SVG-LTVWLD  152 (152)
T ss_dssp             TTE-EEEECS
T ss_pred             hCC-CEEEeC
Confidence            999 566653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.70  E-value=2.9e-17  Score=136.23  Aligned_cols=150  Identities=11%  Similarity=0.161  Sum_probs=110.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcccc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQ  111 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~~  111 (335)
                      |||+|||+|.||+++|+.|.++|++|++||+++.........++....++.+++ .++|+||+|+|++...+++.++. +
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~diIi~~v~~~~~~~~~~~~~-~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDV-YSCPVVISAVTPGVALGAARRAG-R   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHH-HTSSEEEECSCGGGHHHHHHHHH-T
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHH-hhcCeEEEEecCchHHHHHHhhc-c
Confidence            799999999999999999999999999999888765444444555566778888 89999999999999888888774 3


Q ss_pred             ccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhc
Q 044593          112 RLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKE  191 (335)
Q Consensus       112 ~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~  191 (335)
                      .  .+.+++|++++.....+.+.+.++. ..|+.+ |+.|+....  ..+.+.++.    +.+   .+.++    .+..+
T Consensus        79 ~--~~~~~id~st~~p~~~~~l~~~~~~-~~~~d~-~v~g~~~~~--~~~~~~~~~----G~~---~~~~~----~l~~~  141 (152)
T d1i36a2          79 H--VRGIYVDINNISPETVRMASSLIEK-GGFVDA-AIMGSVRRK--GADIRIIAS----GRD---AEEFM----KLNRY  141 (152)
T ss_dssp             T--CCSEEEECSCCCHHHHHHHHHHCSS-SEEEEE-EECSCHHHH--GGGCEEEEE----STT---HHHHH----GGGGG
T ss_pred             c--CCceeeccCcCCHHHHHHHHHHHhc-cCCCcc-cccCCcccc--cCCcEEEEE----CCC---HHHHH----HHHHc
Confidence            3  3678999999988888888888864 468776 555544321  134443331    322   22332    36789


Q ss_pred             CCEEEEeCh
Q 044593          192 GCRMVEMSC  200 (335)
Q Consensus       192 G~~v~~~~~  200 (335)
                      |.++.++..
T Consensus       142 g~~i~~~G~  150 (152)
T d1i36a2         142 GLNIEVRGR  150 (152)
T ss_dssp             TCEEEECSS
T ss_pred             CCeeeEcCC
Confidence            998888764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.9e-16  Score=134.46  Aligned_cols=157  Identities=15%  Similarity=0.103  Sum_probs=121.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CCC------------------ceec
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LNA------------------PFFA   79 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g~------------------~~~~   79 (335)
                      |..+||+|||+|.||++||..++.+|++|++||++++..+.+.+           .+.                  ..++
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~   81 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   81 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence            56789999999999999999999999999999999875443221           121                  2355


Q ss_pred             ChhhHhhcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCccc
Q 044593           80 DLNDLCELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKS  157 (335)
Q Consensus        80 ~~~~~~~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~  157 (335)
                      +..+.+ .+||+||-|+|.+.  -.+++.++. +.+++++++...+|+  ..+..+.+.+...-+|++.||+..+...  
T Consensus        82 d~~~a~-~~ad~ViEav~E~l~~K~~v~~~l~-~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~HffnP~~~~--  155 (192)
T d1f0ya2          82 DAASVV-HSTDLVVEAIVENLKVKNELFKRLD-KFAAEHTIFASNTSS--LQITSIANATTRQDRFAGLHFFNPVPVM--  155 (192)
T ss_dssp             CHHHHT-TSCSEEEECCCSCHHHHHHHHHHHT-TTSCTTCEEEECCSS--SCHHHHHTTSSCGGGEEEEEECSSTTTC--
T ss_pred             hhHhhh-cccceehhhcccchhHHHHHHHHHh-hhcccCceeeccCcc--cccchhhhhccCHhHEEeeccccccCcc--
Confidence            666666 79999999999875  578999995 678899999887776  4456677666666689999998776642  


Q ss_pred             ccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          158 SWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       158 ~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                           | +++  +++++.++++.++.+.++++.+|..++.+.
T Consensus       156 -----~-lVE--Iv~g~~T~~~~i~~~~~~~~~lgk~pV~v~  189 (192)
T d1f0ya2         156 -----K-LVE--VIKTPMTSQKTFESLVDFSKALGKHPVSCK  189 (192)
T ss_dssp             -----C-EEE--EECCTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             -----c-EEE--EcCCCCCCHHHHHHHHHHHHHcCCEEEEee
Confidence                 1 222  235566778899999999999999988773

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=2.5e-17  Score=136.36  Aligned_cols=149  Identities=13%  Similarity=0.115  Sum_probs=101.2

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcccccc
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRL  113 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~~~~l  113 (335)
                      |||||+|+||.+|+.+|++.++.+.+|+|+++..+...+.+.....++.+++ +++|+||+|+|++.+.+++.++.    
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~-~~~DiVil~v~d~~i~~v~~~l~----   76 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHP-ELNGVVFVIVPDRYIKTVANHLN----   76 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCC-C---CEEECSCTTTHHHHHTTTC----
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhh-ccCcEEEEeccchhhhHHHhhhc----
Confidence            7999999999999999987555557899998876555554444445666776 88999999999999999999883    


Q ss_pred             CCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccc---cCCCcceecccccCCChhHHHHHHHHHHHHHh
Q 044593          114 KRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSS---WENLPFMYDKVRIGNDEERIKRVDKFLDVFAK  190 (335)
Q Consensus       114 ~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~---~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~  190 (335)
                      .++++|+|+++....  +.++     .....+.||+..+..+...   +.+.++.+     +++   ++.++.++++|+.
T Consensus        77 ~~~~ivi~~s~~~~~--~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~gd---~~~~~~~~~l~~~  141 (153)
T d2i76a2          77 LGDAVLVHCSGFLSS--EIFK-----KSGRASIHPNFSFSSLEKALEMKDQIVFGL-----EGD---ERGLPIVKKIAEE  141 (153)
T ss_dssp             CSSCCEEECCSSSCG--GGGC-----SSSEEEEEECSCC--CTTGGGCGGGCCEEE-----CCC---TTTHHHHHHHHHH
T ss_pred             ccceeeeecccchhh--hhhh-----hhccccceeeeecccccchhhhccCcEEEE-----eCC---HHHHHHHHHHHHH
Confidence            368899999877542  2222     2334567888876543211   12233222     333   2467889999999


Q ss_pred             cCCEEEEeChHH
Q 044593          191 EGCRMVEMSCFD  202 (335)
Q Consensus       191 ~G~~v~~~~~~e  202 (335)
                      +|++++++++|+
T Consensus       142 lG~~~~~i~~ek  153 (153)
T d2i76a2         142 ISGKYFVIPSEK  153 (153)
T ss_dssp             HCSCEEECCGGG
T ss_pred             HCCcEEEeCCCC
Confidence            999999998874

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.64  E-value=8.2e-17  Score=136.69  Aligned_cols=153  Identities=12%  Similarity=0.102  Sum_probs=113.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc--------eecChhhHhhcCCCEEEEecCchh-H
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP--------FFADLNDLCELHPDVVLLSTSILS-T  101 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~--------~~~~~~~~~~~~aDvVIlavp~~~-~  101 (335)
                      ..+|||||+|.||..||+.|.++||+|++|||+++..+...+.+..        ...++.+.+ ..+|++|+++|... +
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ii~~~~~~~~v   80 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKL-KKPRRIILLVKAGQAV   80 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHB-CSSCEEEECSCTTHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhh-cccceEEEecCchHHH
Confidence            3579999999999999999999999999999999887666555432        122334445 68999999998864 6


Q ss_pred             HHHHhhccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHH
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKR  180 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~  180 (335)
                      .++...+. +.++++++|+|++++.......+.+.+ ..+..|+. .|+.|.....  ..|.. ++.    +++   ++.
T Consensus        81 ~~v~~~l~-~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ld-apvsGg~~~A--~~G~~-~~~----gG~---~~~  148 (176)
T d2pgda2          81 DNFIEKLV-PLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVG-SGVSGGEDGA--RYGPS-LMP----GGN---KEA  148 (176)
T ss_dssp             HHHHHHHH-HHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHHH--HHCCE-EEE----EEC---TTT
T ss_pred             HHHHHHHH-hccccCcEEEecCcchhHHHHHHHHHHHhcCCceec-cccccCcccc--cCCcE-EEc----CCC---HHH
Confidence            77888874 678899999999998776655554433 35678886 4888876532  24553 332    333   246


Q ss_pred             HHHHHHHHHhcCCEEE
Q 044593          181 VDKFLDVFAKEGCRMV  196 (335)
Q Consensus       181 ~~~v~~l~~~~G~~v~  196 (335)
                      ++.++++|+.++.++.
T Consensus       149 ~~~~~~il~~~~~kv~  164 (176)
T d2pgda2         149 WPHIKAIFQGIAAKVG  164 (176)
T ss_dssp             HHHHHHHHHHHSCBCT
T ss_pred             HHHHHHHHHHHhcccC
Confidence            7888999999998763

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.62  E-value=1.4e-15  Score=130.25  Aligned_cols=155  Identities=16%  Similarity=0.150  Sum_probs=116.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CCC-------------ceecChhhHh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LNA-------------PFFADLNDLC   85 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g~-------------~~~~~~~~~~   85 (335)
                      ..+||+|||+|.||++||..++.+|++|++||++++..+.+.+           .+.             ..+++..++ 
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-   81 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF-   81 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG-
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc-
Confidence            4678999999999999999999999999999999876543322           111             123444443 


Q ss_pred             hcCCCEEEEecCchh--HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCc
Q 044593           86 ELHPDVVLLSTSILS--TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLP  163 (335)
Q Consensus        86 ~~~aDvVIlavp~~~--~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~  163 (335)
                       .+||+||-|+|.+.  ..+++.++. ...++++++...+|+  ..+..+.+.+....+|++.|+...+...       +
T Consensus        82 -~~adlViEav~E~l~~K~~lf~~l~-~~~~~~~IiaSnTS~--l~i~~la~~~~~p~r~~g~Hf~nP~~~~-------~  150 (186)
T d1wdka3          82 -GNVDLVVEAVVENPKVKQAVLAEVE-NHVREDAILASNTST--ISISLLAKALKRPENFVGMHFFNPVHMM-------P  150 (186)
T ss_dssp             -GGCSEEEECCCSCHHHHHHHHHHHH-TTSCTTCEEEECCSS--SCHHHHGGGCSCGGGEEEEECCSSTTTC-------C
T ss_pred             -cccceeeeeecchHHHHHHHHHHHH-hhcCCCeeEEecccc--ccHHHHHHhccCchheEeeccccCcccC-------C
Confidence             68999999999885  467899985 678899999988776  4457777777666689999997766532       2


Q ss_pred             ceecccccCCChhHHHHHHHHHHHHHhcCCEEEEeC
Q 044593          164 FMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEMS  199 (335)
Q Consensus       164 ~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~~  199 (335)
                       +++  +++++.++++.++.+.++++.+|..++.+.
T Consensus       151 -lVE--iv~~~~T~~~~~~~~~~~~~~lgk~pv~v~  183 (186)
T d1wdka3         151 -LVE--VIRGEKSSDLAVATTVAYAKKMGKNPIVVN  183 (186)
T ss_dssp             -EEE--EEECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             -eEE--ECCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence             221  123455677889999999999999988763

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.54  E-value=2.2e-15  Score=127.71  Aligned_cols=154  Identities=16%  Similarity=0.230  Sum_probs=109.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc--------eecChhhHh--hcCCCEEEEecCchh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP--------FFADLNDLC--ELHPDVVLLSTSILS  100 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~--------~~~~~~~~~--~~~aDvVIlavp~~~  100 (335)
                      .|||||||+|.||..+|+.|.++||+|++|||+++..+...+.+..        ...+.+.+.  ...++.++++++...
T Consensus         1 ~MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1pgja2           1 SMDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGA   80 (178)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSH
T ss_pred             CCEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcc
Confidence            3799999999999999999999999999999999876655444432        112222222  146777777777654


Q ss_pred             -HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhC-CCCCceEeccccCCCCCcccccCCCcceecccccCCChhHH
Q 044593          101 -TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL-PQDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERI  178 (335)
Q Consensus       101 -~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l-~~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~  178 (335)
                       ...++..+. ..+.++++++|++++.......+.+.+ ..+..|+.+ |+.|...+.  ..|.. ++    ++++   +
T Consensus        81 ~~~~~~~~~~-~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~lda-pv~g~~~~a--~~g~~-~m----vgG~---~  148 (178)
T d1pgja2          81 ATDSTIEQLK-KVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGM-GISGGEEGA--RKGPA-FF----PGGT---L  148 (178)
T ss_dssp             HHHHHHHHHH-HHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEE-EEESHHHHH--HHCCE-EE----EEEC---H
T ss_pred             hhhhhhhhhh-hhccccceecccCccchhHHHHHHHHHhhcceeEecc-cccCCcchh--cCCcE-EE----eeCC---H
Confidence             566777764 568899999999988776666665554 456788875 888866432  14543 33    2343   4


Q ss_pred             HHHHHHHHHHHhcCCEEE
Q 044593          179 KRVDKFLDVFAKEGCRMV  196 (335)
Q Consensus       179 ~~~~~v~~l~~~~G~~v~  196 (335)
                      +.+++++++|+.++.++.
T Consensus       149 ~~~~~v~pil~~~~~~~~  166 (178)
T d1pgja2         149 SVWEEIRPIVEAAAAKAD  166 (178)
T ss_dssp             HHHHHHHHHHHHHSCBCT
T ss_pred             HHHHHHHHHHHHHhcccc
Confidence            678999999999998765

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=6.4e-15  Score=122.38  Aligned_cols=153  Identities=20%  Similarity=0.213  Sum_probs=109.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhhcc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIP  109 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~  109 (335)
                      .||||||+|.||..||+.|.++|+.+ +|+|+++.. +...+.+ ......+. + .++|++|+++|... +..+...+.
T Consensus         1 ekIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~i~~~~~~~~v~~~~~~l~   76 (156)
T d2cvza2           1 EKVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFG-SEAVPLER-V-AEARVIFTCLPTTREVYEVAEALY   76 (156)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHC-CEECCGGG-G-GGCSEEEECCSSHHHHHHHHHHHT
T ss_pred             CeEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcC-Cccccccc-c-cceeEEEecccchhhhhhhhcccc
Confidence            38999999999999999999999866 577776544 3333333 33333344 3 67999999999875 455566664


Q ss_pred             ccccCCccEEEEcCCCCchHHHHHHhhCC-CCCceEeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHH
Q 044593          110 FQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDILCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVF  188 (335)
Q Consensus       110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~  188 (335)
                       ..++++.+++|++++.......+.+.+. .+.+|+.+ |+.|...+.  ..|...++.    +++   ++.++++++++
T Consensus        77 -~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~lda-pVsGg~~~A--~~G~L~~~v----gG~---~~~~~~~~p~L  145 (156)
T d2cvza2          77 -PYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGA--EAGTLTVML----GGP---EEAVERVRPFL  145 (156)
T ss_dssp             -TTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHH--HHTCEEEEE----ESC---HHHHHHHGGGC
T ss_pred             -ccccccccccccccCCHHHHHHHHHHHHHcCCeEEec-cccCchhhh--ccCCEEEEE----eCC---HHHHHHHHHHH
Confidence             5688999999999987776666665553 46788875 999877532  256544542    444   45778888888


Q ss_pred             HhcCCEEEEeCh
Q 044593          189 AKEGCRMVEMSC  200 (335)
Q Consensus       189 ~~~G~~v~~~~~  200 (335)
                      + ++.+++++.|
T Consensus       146 ~-~~~~v~~~GP  156 (156)
T d2cvza2         146 A-YAKKVVHVGP  156 (156)
T ss_dssp             T-TEEEEEEEES
T ss_pred             H-hcCcCEEeCc
Confidence            4 8888888764

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.52  E-value=1.6e-15  Score=134.35  Aligned_cols=155  Identities=12%  Similarity=0.149  Sum_probs=119.2

Q ss_pred             CCeEEEEcccH--HHHHHHH------HHHHcCCeEEEEcCCCCcH-HHHHh-----------------------------
Q 044593           31 SLKIAVIGFGN--FGQFLAK------AFARHHHTLLVHSRSDHSP-AVRQQ-----------------------------   72 (335)
Q Consensus        31 ~~kI~IIG~G~--mG~siA~------~L~~~G~~V~~~dr~~~~~-~~a~~-----------------------------   72 (335)
                      ..++.++|+|+  ||..++.      +|.+.|+.|++.|.+++.. +.+..                             
T Consensus        40 ~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~  119 (242)
T d2b0ja2          40 THSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACI  119 (242)
T ss_dssp             CCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEE
T ss_pred             eeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchh
Confidence            45688999998  7777766      6889999999999885432 21111                             


Q ss_pred             -------CCCceecChhhHhhcCCCEEEEecCchh-HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCC-CCCce
Q 044593           73 -------LNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP-QDFDI  143 (335)
Q Consensus        73 -------~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~-~~~~~  143 (335)
                             .|+..++|+.+++ +++|+||+|+|... +.++++++. +.++++++|+|++|++......+.+.+. .+.+|
T Consensus       120 ~~~~pEe~Gv~v~~d~~Eav-~~ADiII~~vP~~~~v~~Vi~~I~-~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~v  197 (242)
T d2b0ja2         120 HLVHPEDVGLKVTSDDREAV-EGADIVITWLPKGNKQPDIIKKFA-DAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNI  197 (242)
T ss_dssp             ESSCGGGGTCEEESCHHHHH-TTCSEEEECCTTCTTHHHHHHHHG-GGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEE
T ss_pred             hcCCHHHCCCEEECCHHHHH-hcCCeEEEeeecHHHHHHHHHHHH-hhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEE
Confidence                   1345567888888 89999999998754 688999995 7899999999999999888777877665 46789


Q ss_pred             EeccccCCCCCcccccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEe
Q 044593          144 LCTHPMFGPESAKSSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEM  198 (335)
Q Consensus       144 v~~HPmaG~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~  198 (335)
                      ++.|||++|+..     |...+..    +  ..+++.++++.++|+.+|..++.+
T Consensus       198 i~~hp~a~pe~~-----g~~li~~----~--~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         198 TSYHPGCVPEMK-----GQVYIAE----G--YASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             EECBCSSCTTTC-----CCEEEEE----S--SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             ECCCccCcCccc-----cceEEec----C--CCCHHHHHHHHHHHHHHCCCeEeC
Confidence            999999999853     3333332    1  234578999999999999888775

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.51  E-value=2.3e-14  Score=121.87  Aligned_cols=157  Identities=13%  Similarity=0.127  Sum_probs=109.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC--cHHHHHhCC-------------CceecChhhHhhcCCCEEEEec
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH--SPAVRQQLN-------------APFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~--~~~~a~~~g-------------~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      |||+|||+|.||+++|..|.++|++|.+|.|+.+  ..+...+..             +..++++.+++ +++|+||+||
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL-ENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH-TTCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHH-hccchhhccc
Confidence            8999999999999999999999999999988543  233232221             11345667777 8999999999


Q ss_pred             CchhHHHHHhhccccccCCccEEEEcCCC-----C-chHHHHHHhhCCCCC-ceEeccccCCCCCcccccCCCcceeccc
Q 044593           97 SILSTQSVLKSIPFQRLKRSTLFVDVLSV-----K-EFPRNLFLKYLPQDF-DILCTHPMFGPESAKSSWENLPFMYDKV  169 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l~~~~iVvd~~Sv-----K-~~~~~~l~~~l~~~~-~~v~~HPmaG~~~~~~~~~g~~~i~~~~  169 (335)
                      |...+.++++++. +.++++.+|+.+.+.     + ..+.+.+.+..+... +++   -+.||..+.+...+.|...+  
T Consensus        80 ps~~~~~~~~~l~-~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~---vlsGP~~A~Ei~~~~pt~~v--  153 (180)
T d1txga2          80 STDGVLPVMSRIL-PYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTV---AITGPAIAREVAKRMPTTVV--  153 (180)
T ss_dssp             CGGGHHHHHHHHT-TTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEE---EEESSCCHHHHHTTCCEEEE--
T ss_pred             chhhhHHHHHhhc-cccccceecccccCccccccccccchHHHHhhhccccccee---EEcCCccHHHHHcCCCcEEE--
Confidence            9999999999995 678777666654332     1 123455555443211 222   25688887677778775543  


Q ss_pred             ccCCChhHHHHHHHHHHHHHhcCCEEEEe
Q 044593          170 RIGNDEERIKRVDKFLDVFAKEGCRMVEM  198 (335)
Q Consensus       170 ~~~~~~~~~~~~~~v~~l~~~~G~~v~~~  198 (335)
                       +.+.  +.+..+.++++|+.-.++++..
T Consensus       154 -ias~--~~~~a~~i~~~f~~~~frvy~S  179 (180)
T d1txga2         154 -FSSP--SESSANKMKEIFETEYFGVEVT  179 (180)
T ss_dssp             -EECS--CHHHHHHHHHHHCBTTEEEEEE
T ss_pred             -EEcC--CHHHHHHHHHHHCCCCEEEEeC
Confidence             2332  3566788999999888888764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.49  E-value=1.1e-14  Score=124.78  Aligned_cols=158  Identities=14%  Similarity=0.189  Sum_probs=110.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------C------CceecChhhHhhcCCCEEEE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------N------APFFADLNDLCELHPDVVLL   94 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------g------~~~~~~~~~~~~~~aDvVIl   94 (335)
                      +.|+||+|||+|.||+++|..|.++|++|.+|+|+++..+...+.        +      +..++++++++ +++|+||+
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~-~~ad~iii   83 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY-NGAEIILF   83 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH-TTCSCEEE
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhcc-CCCCEEEE
Confidence            455689999999999999999999999999999998766544321        1      23466788877 89999999


Q ss_pred             ecCchhHHHHHhhccccc-----cCCccEEEEcC-----CCCchHHHHHHhhCCCCCceEeccccCCCCCcccccCCCcc
Q 044593           95 STSILSTQSVLKSIPFQR-----LKRSTLFVDVL-----SVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPF  164 (335)
Q Consensus        95 avp~~~~~~vl~~l~~~~-----l~~~~iVvd~~-----SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~~g~~~  164 (335)
                      |+|...+.++++++. +.     ++++..|+.++     ++...+.+.+.+.++.. .+ +  -+.||..+.+...|.|.
T Consensus        84 avPs~~~~~~~~~~~-~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~-~~-~--vlsGP~~A~Ev~~~~pt  158 (189)
T d1n1ea2          84 VIPTQFLRGFFEKSG-GNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSP-LL-S--VLAGPSFAIEVATGVFT  158 (189)
T ss_dssp             CSCHHHHHHHHHHHC-HHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGG-GE-E--EEESSCCHHHHHTTCCE
T ss_pred             cCcHHHHHHHHHHHH-hhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhccc-ce-E--EEecCCcHHHHHcCCCc
Confidence            999999999998874 22     34566666652     11223446666666532 22 1  15688887677788776


Q ss_pred             eecccccCCChhHHHHHHHHHHHHHhc--CCEEEE
Q 044593          165 MYDKVRIGNDEERIKRVDKFLDVFAKE--GCRMVE  197 (335)
Q Consensus       165 i~~~~~~~~~~~~~~~~~~v~~l~~~~--G~~v~~  197 (335)
                      .++   +++.  +.+..+.++++|+.-  .++++.
T Consensus       159 ~~v---iAs~--~~~~a~~i~~lfst~~~~frvy~  188 (189)
T d1n1ea2         159 CVS---IASA--DINVARRLQRIMSTGDRSFVCWA  188 (189)
T ss_dssp             EEE---EECS--SHHHHHHHHHHHSCTTSSEEEEE
T ss_pred             EEE---EEeC--CHHHHHHHHHHhCCCCCCEEEec
Confidence            654   3332  356678889999753  355553

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.43  E-value=3.7e-13  Score=113.41  Aligned_cols=95  Identities=20%  Similarity=0.225  Sum_probs=79.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCC---------------ceecChhhHhhcCCCEEEEe
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNA---------------PFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~---------------~~~~~~~~~~~~~aDvVIla   95 (335)
                      .+||+|||+|.||.++|..|.++||+|++|||+++..+...+.+.               ..++++.+.+ +++|+||+|
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~aD~iii~   79 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-KDADVILIV   79 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-TTCSEEEEC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh-cCCCEEEEE
Confidence            379999999999999999999999999999999877665554332               1246777777 899999999


Q ss_pred             cCchhHHHHHhhccccccCCccEEEEcCCCCc
Q 044593           96 TSILSTQSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus        96 vp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                      +|......+++++. ++++++++|+...+...
T Consensus        80 v~~~~~~~~~~~i~-~~l~~~~~iv~~~g~~~  110 (184)
T d1bg6a2          80 VPAIHHASIAANIA-SYISEGQLIILNPGATG  110 (184)
T ss_dssp             SCGGGHHHHHHHHG-GGCCTTCEEEESSCCSS
T ss_pred             EchhHHHHHHHHhh-hccCCCCEEEEeCCCCc
Confidence            99999999999996 78999999887755543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.25  E-value=2.9e-11  Score=104.02  Aligned_cols=160  Identities=17%  Similarity=0.180  Sum_probs=100.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC--------------------CCceecChhhHhhcCCCE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL--------------------NAPFFADLNDLCELHPDV   91 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~--------------------g~~~~~~~~~~~~~~aDv   91 (335)
                      |||+|||+|.+|..+|..|+++|++|++||.|++..+...+-                    ....+++..+++ .++|+
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i-~~~d~   79 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAV-LDSDV   79 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH-HTCSE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHH-hhCCE
Confidence            899999999999999999999999999999997766533321                    112456777776 79999


Q ss_pred             EEEecCchh----------HHHHHhhcc--ccccCCccEEEEcCCCCchHHHHH-----HhhCC--CCC-ceEeccccCC
Q 044593           92 VLLSTSILS----------TQSVLKSIP--FQRLKRSTLFVDVLSVKEFPRNLF-----LKYLP--QDF-DILCTHPMFG  151 (335)
Q Consensus        92 VIlavp~~~----------~~~vl~~l~--~~~l~~~~iVvd~~SvK~~~~~~l-----~~~l~--~~~-~~v~~HPmaG  151 (335)
                      +++|+|...          ...+++.+.  .....++++|+--+++.....+.+     .+...  .+. .++..+|-+-
T Consensus        80 i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~  159 (202)
T d1mv8a2          80 SFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFL  159 (202)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCC
T ss_pred             EEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhh
Confidence            999998631          334444331  123557788888777765444332     22111  111 2345555543


Q ss_pred             CCCcc-cccCCCcceecccccCCChhHHHHHHHHHHHHHhcCCEEEEe
Q 044593          152 PESAK-SSWENLPFMYDKVRIGNDEERIKRVDKFLDVFAKEGCRMVEM  198 (335)
Q Consensus       152 ~~~~~-~~~~g~~~i~~~~~~~~~~~~~~~~~~v~~l~~~~G~~v~~~  198 (335)
                      .+... ..+...+.++    +|+.  +++..+.++++++.+.+.++.+
T Consensus       160 ~~G~a~~d~~~~~~iV----iG~~--~~~~~~~~~~ly~~i~~~ii~~  201 (202)
T d1mv8a2         160 RESTAIKDYDFPPMTV----IGEL--DKQTGDLLEEIYRELDAPIIRK  201 (202)
T ss_dssp             CTTSHHHHHHSCSCEE----EEES--SHHHHHHHHHHHTTSSSCEEEE
T ss_pred             cccchhhhhcCCCeEE----EEeC--CHHHHHHHHHHHHhcCCCeEec
Confidence            33210 1112222222    2332  3456788999999998887765

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=4.3e-12  Score=105.02  Aligned_cols=91  Identities=20%  Similarity=0.295  Sum_probs=71.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc-------eecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP-------FFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~-------~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      |||+|||+|.||+.+|..|.+.|++|++++|+++..+.....+..       ...+..+.. ..+|+||+|||...+.++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~iii~vka~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL-ATSDLLLVTLKAWQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHH-HTCSEEEECSCGGGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhh-cccceEEEeecccchHHH
Confidence            899999999999999999999999999999998754322222211       122334444 789999999999999999


Q ss_pred             HhhccccccCCccEEEEcCC
Q 044593          105 LKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~S  124 (335)
                      ++.+. +.+++++.|+.+..
T Consensus        80 ~~~l~-~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          80 VKSLA-STLPVTTPILLIHN   98 (167)
T ss_dssp             HHHHH-TTSCTTSCEEEECS
T ss_pred             HHhhc-cccCcccEEeeccC
Confidence            99995 67888888887643

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.99  E-value=4.2e-10  Score=95.10  Aligned_cols=103  Identities=19%  Similarity=0.248  Sum_probs=75.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|+|||+|.||..+|+.+...|.+|++||+++...      ......++++++ .+||+|++++|... +..++.
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~------~~~~~~~l~ell-~~sDiv~~~~pl~~~t~~li~  111 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG------PWRFTNSLEEAL-REARAAVCALPLNKHTRGLVK  111 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS------SSCCBSCSHHHH-TTCSEEEECCCCSTTTTTCBC
T ss_pred             cccCceEEEeccccccccceeeeecccccccccccccccc------ceeeeechhhhh-hccchhhcccccccccccccc
Confidence            4578899999999999999999999999999999986422      223446788888 89999999999763 333332


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYL  137 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l  137 (335)
                      .-....+++++++++++-....-.+.+.+.+
T Consensus       112 ~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL  142 (181)
T d1qp8a1         112 YQHLALMAEDAVFVNVGRAEVLDRDGVLRIL  142 (181)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             cceeeeccccceEEeccccccccchhhhhhc
Confidence            2112457899999999855433334444444

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.95  E-value=4.4e-10  Score=95.92  Aligned_cols=109  Identities=16%  Similarity=0.251  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.++..|++|.+||+...... ....++....++++++ ..||+|++++|... +..++.
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-~~~~~~~~~~~l~~ll-~~sD~i~~~~plt~~T~~li~  123 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERALGLQRVSTLQDLL-FHSDCVTLHCGLNEHNHHLIN  123 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHHTCEECSSHHHHH-HHCSEEEECCCCCTTCTTSBS
T ss_pred             eeeCceEEEeccccccccceeeeeccccceeeccCcccccc-hhhhccccccchhhcc-ccCCEEEEeecccccchhhhh
Confidence            35678999999999999999999999999999999765432 3344666677889988 89999999999664 333332


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                      .-....+++++++++++-....-.+.+.+.+.
T Consensus       124 ~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  155 (193)
T d1mx3a1         124 DFTVKQMRQGAFLVNTARGGLVDEKALAQALK  155 (193)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             HHHHhccCCCCeEEecCCceEEcHHHHHHHHH
Confidence            11123578999999998665444455555443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.94  E-value=8.1e-10  Score=93.86  Aligned_cols=111  Identities=19%  Similarity=0.272  Sum_probs=85.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ....++|+|||+|.+|..+|+.++..|.+|.+||+...........++....++++++ +++|+|++++|... +..++.
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l-~~sD~v~~~~plt~~T~~li~  119 (188)
T d2naca1          41 DLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMY-PVCDVVTLNCPLHPETEHMIN  119 (188)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHG-GGCSEEEECSCCCTTTTTCBS
T ss_pred             eccccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHH-HhccchhhcccccccchhhhH
Confidence            3467899999999999999999999999999999987666556666777778888988 89999999999764 344443


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      .-....+++++++++++-....-.+.+.+.+..
T Consensus       120 ~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~  152 (188)
T d2naca1         120 DETLKLFKRGAYIVNTARGKLCDRDAVARALES  152 (188)
T ss_dssp             HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred             HHHHHhCCCCCEEEecCchhhhhHHHHHHHHhC
Confidence            211245789999999986654444555555543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.91  E-value=1.2e-09  Score=93.03  Aligned_cols=110  Identities=18%  Similarity=0.234  Sum_probs=80.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||+.+|+.+...|++|.+||+...........+.....++++++ ..||+|++++|... +..++.
T Consensus        44 ~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll-~~sD~v~l~~plt~~T~~li~  122 (191)
T d1gdha1          44 KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLL-SVSQFFSLNAPSTPETRYFFN  122 (191)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHH-HHCSEEEECCCCCTTTTTCBS
T ss_pred             eecccceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHH-hhCCeEEecCCCCchHhheec
Confidence            4568999999999999999999999999999999987654434444555556788888 89999999999764 444443


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                      .-....+++++++++++-....-.+.+.+.+.
T Consensus       123 ~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  154 (191)
T d1gdha1         123 KATIKSLPQGAIVVNTARGDLVDNELVVAALE  154 (191)
T ss_dssp             HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             HHHhhCcCCccEEEecCCccchhhHHHHHHHH
Confidence            21124578999999997654433345544443

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.86  E-value=1.1e-09  Score=93.85  Aligned_cols=107  Identities=16%  Similarity=0.245  Sum_probs=75.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ...+++|||||+|.||..+|+.++..|++|++||+......   ... ....++++++ +.||+|++++|... +..++.
T Consensus        42 ~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~---~~~-~~~~~l~~l~-~~~D~v~~~~plt~~T~~li~  116 (199)
T d1dxya1          42 ELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD---HPD-FDYVSLEDLF-KQSDVIDLHVPGIEQNTHIIN  116 (199)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC---CTT-CEECCHHHHH-HHCSEEEECCCCCGGGTTSBC
T ss_pred             cccceeeeeeecccccccccccccccceeeeccCCccchhh---hcc-hhHHHHHHHH-Hhcccceeeeccccccccccc
Confidence            34578999999999999999999999999999998764321   111 2345788888 78999999999764 333332


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      .-....+++++++++++-....-.+.+.+.+..
T Consensus       117 ~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~  149 (199)
T d1dxya1         117 EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKS  149 (199)
T ss_dssp             HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred             HHHhhccCCceEEEecccHhhhhhHHHHHHHhc
Confidence            211235789999999976544444555555543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=2.4e-09  Score=90.61  Aligned_cols=110  Identities=15%  Similarity=0.208  Sum_probs=81.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ....++|+|||+|.+|..+|+.+...|++|++||+...... ....++. ..++++++ ++||+|++++|... +..++.
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~-~~~~~~~-~~~l~ell-~~sDiv~~~~Plt~~T~~lin  117 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR-AAQLGIE-LLSLDDLL-ARADFISVHLPKTPETAGLID  117 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHH-HHHHTCE-ECCHHHHH-HHCSEEEECCCCSTTTTTCBC
T ss_pred             cccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhH-HhhcCce-eccHHHHH-hhCCEEEEcCCCCchhhhhhh
Confidence            45678999999999999999999999999999998875543 3333443 35778888 78999999999764 444443


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQD  140 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~  140 (335)
                      .-....+++++++++++-......+.+.+.+..+
T Consensus       118 ~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~  151 (184)
T d1ygya1         118 KEALAKTKPGVIIVNAARGGLVDEAALADAITGG  151 (184)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS
T ss_pred             HHHHhhhCCCceEEEecchhhhhhHHHHHHHhcC
Confidence            2112457899999999866555556666655443

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.84  E-value=2.2e-09  Score=91.82  Aligned_cols=106  Identities=14%  Similarity=0.248  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~  107 (335)
                      ..+++|||||+|.||..+|+.++..|++|.+||+......  ...+. ...++++++ .+||+|++++|... +..++..
T Consensus        41 l~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~--~~~~~-~~~~l~~~l-~~sDii~~~~plt~~T~~li~~  116 (197)
T d1j4aa1          41 VRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL--EKKGY-YVDSLDDLY-KQADVISLHVPDVPANVHMIND  116 (197)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH--HHTTC-BCSCHHHHH-HHCSEEEECSCCCGGGTTCBSH
T ss_pred             ccCCeEEEecccccchhHHHhHhhhcccccccCccccccc--cccee-eeccccccc-cccccccccCCccccccccccH
Confidence            4678999999999999999999999999999998865433  22233 345788888 78999999999654 3333321


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                      -....+++++++++++-....-.+.+.+.+.
T Consensus       117 ~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  147 (197)
T d1j4aa1         117 ESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD  147 (197)
T ss_dssp             HHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             HHHhhhCCccEEEecCchhhhhhHHHHHHHh
Confidence            1123477999999997554333445544443

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.77  E-value=4.8e-08  Score=82.73  Aligned_cols=103  Identities=13%  Similarity=0.096  Sum_probs=71.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCC-------------------ceecChhhHhhcCCCEE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNA-------------------PFFADLNDLCELHPDVV   92 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~-------------------~~~~~~~~~~~~~aDvV   92 (335)
                      |||+|||+|.+|..+|..|+ .|++|++||.|++..+...+ |.                   ....+..... .++|++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~-g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ii   77 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINN-GLSPIQDEYIEYYLKSKQLSIKATLDSKAAY-KEAELV   77 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHT-TCCSSCCHHHHHHHHHSCCCEEEESCHHHHH-HHCSEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhh-cccccchhhHHHHhhhhhhhhhccchhhhhh-hccccc
Confidence            89999999999999998886 69999999999877654432 21                   1223333334 689999


Q ss_pred             EEecCchh-----------HHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCC
Q 044593           93 LLSTSILS-----------TQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQ  139 (335)
Q Consensus        93 Ilavp~~~-----------~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~  139 (335)
                      ++|||...           +....+.+.  ..+++.+|+--+++.....+.+.+.+..
T Consensus        78 ~v~vpt~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~iii~Stv~pgt~~~~~~~~~~  133 (196)
T d1dlja2          78 IIATPTNYNSRINYFDTQHVETVIKEVL--SVNSHATLIIKSTIPIGFITEMRQKFQT  133 (196)
T ss_dssp             EECCCCCEETTTTEECCHHHHHHHHHHH--HHCSSCEEEECSCCCTTHHHHHHHHTTC
T ss_pred             cccCCccccccCCCcceeEEeehhhhhh--hcccceeEEeeeecCceeeeeeeeccch
Confidence            99998653           233333332  2456777777777776677777766543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=6.7e-09  Score=88.01  Aligned_cols=106  Identities=19%  Similarity=0.212  Sum_probs=77.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLK  106 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~  106 (335)
                      ....++|+|||+|.||..+|+.+...|++|++||+......    .......++++++ +.+|+|++++|... +..++.
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~~~~l~ell-~~sDii~i~~plt~~T~~li~  115 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLL-NMSDVVSLHVPENPSTKNMMG  115 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHH-HHCSEEEECCCSSTTTTTCBC
T ss_pred             cccceEEEEeecccchhhhhhhcccccceEeeccccccchh----hhhhhhhhHHHHH-hhccceeecccCCcchhhhcc
Confidence            34678999999999999999999999999999998754321    1223445788888 78999999999654 333332


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCC
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLP  138 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~  138 (335)
                      .-....+++++++++++-......+.+.+.+.
T Consensus       116 ~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~  147 (188)
T d1sc6a1         116 AKEISLMKPGSLLINASRGTVVDIPALADALA  147 (188)
T ss_dssp             HHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred             HHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHH
Confidence            21123467999999998665555566655554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.58  E-value=4.7e-08  Score=80.50  Aligned_cols=92  Identities=15%  Similarity=0.116  Sum_probs=67.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH-HhCCCce--------ecChhhHhhcCCCEEEEecCchhH
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR-QQLNAPF--------FADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a-~~~g~~~--------~~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      .++|.|||+|.||..+|+.|.+.|++|+++||+.+..+.. .+.+...        .....+.+ ...|+++.++|....
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEV-AKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHH-TTSSEEEECSCGGGH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhh-hccceeEeeccchhh
Confidence            5799999999999999999999999999999998866543 3333211        11223334 688999999998877


Q ss_pred             HHHHhhccccccCCccEEEEcCCCCc
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSVKE  127 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~SvK~  127 (335)
                      ..+....    .+.++.++|++....
T Consensus        81 ~~~~~~~----~~~~~~~~~~~~~~~  102 (182)
T d1e5qa1          81 ATVIKSA----IRQKKHVVTTSYVSP  102 (182)
T ss_dssp             HHHHHHH----HHHTCEEECSSCCCH
T ss_pred             hHHHHHH----HhhccceeecccCcH
Confidence            6666544    335677888876543

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.55  E-value=1.9e-07  Score=77.01  Aligned_cols=90  Identities=22%  Similarity=0.232  Sum_probs=76.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC-cHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh-h
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH-SPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK-S  107 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~-~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~-~  107 (335)
                      +.++|+|||+|.-|.+-|..|+..|.+|++--|... +.+.|++.|.... +..+++ +.+|+|++.+|...-.++.+ +
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-~~~eA~-~~aDiim~L~PD~~q~~vy~~~   92 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAV-AAADVVMILTPDEFQGRLYKEE   92 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHH-HTCSEEEECSCHHHHHHHHHHH
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-cHHHHh-hhcCeeeeecchHHHHHHHHHh
Confidence            578999999999999999999999999987777654 5677889998764 466777 89999999999998889886 6


Q ss_pred             ccccccCCccEEEEc
Q 044593          108 IPFQRLKRSTLFVDV  122 (335)
Q Consensus       108 l~~~~l~~~~iVvd~  122 (335)
                      +. +++++|..+.=.
T Consensus        93 I~-p~lk~g~~L~Fa  106 (182)
T d1np3a2          93 IE-PNLKKGATLAFA  106 (182)
T ss_dssp             TG-GGCCTTCEEEES
T ss_pred             hh-hhcCCCcEEEEe
Confidence            85 899999887654

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.53  E-value=2.2e-07  Score=79.20  Aligned_cols=158  Identities=14%  Similarity=0.094  Sum_probs=101.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC------CeEEE-EcCCCCcHHHHHhCCCce----ecChhhHhhcCCCEEEEecCch
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH------HTLLV-HSRSDHSPAVRQQLNAPF----FADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G------~~V~~-~dr~~~~~~~a~~~g~~~----~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      ++||+|||+|.-|.+-|..|+..|      .+|++ ...+..+.+.|++.|...    ..+..+++ +.+|+|++.+|+.
T Consensus        44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv-~~ADiVmiLlPDe  122 (226)
T d1qmga2          44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETI-SGSDLVLLLISDS  122 (226)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHH-HTCSEEEECSCHH
T ss_pred             CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHH-hhCCEEEEecchH
Confidence            478999999999999999999965      55644 444556788899999862    23456777 8999999999999


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEeccccCCCCCccccc--------CCCcceeccccc
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSW--------ENLPFMYDKVRI  171 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~~HPmaG~~~~~~~~--------~g~~~i~~~~~~  171 (335)
                      .-.++.+++. +++++|..+.-.-+..-.....+.-..|+++.++-..|-...+.-.+.|        .|.|.++.- .-
T Consensus       123 ~Q~~vy~~I~-p~Lk~G~~L~FaHGFnI~~~~~~~~~~p~dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV-~Q  200 (226)
T d1qmga2         123 AQADNYEKVF-SHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAV-HQ  200 (226)
T ss_dssp             HHHHHHHHHH-HHSCTTCEEEESSSHHHHHHHHHTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEE-EE
T ss_pred             HHHHHHHHHH-HhcCCCceeeecchhhhhhceeeecccCCCceEEEECCCCCCchHHHHHHcccccCCCCceeEEEE-EE
Confidence            9999999885 7899999887754431111111111135667766444533211100011        267766631 10


Q ss_pred             CCChhHHHHHHHHHHHHHhcCCE
Q 044593          172 GNDEERIKRVDKFLDVFAKEGCR  194 (335)
Q Consensus       172 ~~~~~~~~~~~~v~~l~~~~G~~  194 (335)
                      ..+   ..+.+....+.+.+|+-
T Consensus       201 D~s---G~A~~~alayA~aIG~g  220 (226)
T d1qmga2         201 DVD---GRATDVALGWSIALGSP  220 (226)
T ss_dssp             CSS---SCHHHHHHHHHHHHTCS
T ss_pred             CCC---CcHHHHHHHHHHhCCCC
Confidence            111   12445566777777764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.50  E-value=2e-07  Score=75.47  Aligned_cols=91  Identities=15%  Similarity=0.224  Sum_probs=61.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC-------C--CceecChhhHhhcCCCEEEEecC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL-------N--APFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~-------g--~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      +.|||+|||+|.+|.++|..|...|.  +|+++|++++..+ .+.++       +  .....+.+++  ++||+||++..
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~--~~adivvitag   81 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC--KDADLVVITAG   81 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG--TTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHh--ccccEEEEecc
Confidence            57899999999999999999999884  8999999975432 22211       1  1234455554  79999999864


Q ss_pred             chh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           98 ILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...                +.++.+.+.  ...++.+++-++.
T Consensus        82 ~~~~~g~~r~~l~~~N~~i~~~~~~~i~--~~~p~aivivvtN  122 (146)
T d1ez4a1          82 APQKPGESRLDLVNKNLNILSSIVKPVV--DSGFDGIFLVAAN  122 (146)
T ss_dssp             C----------CHHHHHHHHHHHHHHHH--HTTCCSEEEECSS
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHh--hcCCCcEEEEeCC
Confidence            321                234444553  2456677776654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.50  E-value=2.9e-07  Score=72.89  Aligned_cols=92  Identities=13%  Similarity=0.183  Sum_probs=65.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-hCCCce----ecChhhH---hhcCCCEEEEecCchhHHH
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-QLNAPF----FADLNDL---CELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-~~g~~~----~~~~~~~---~~~~aDvVIlavp~~~~~~  103 (335)
                      |||.|+|+|.+|..+++.|.+.|++|+++|.|++..+.+. +.+...    .++.+-+   -.+++|.++.+++.+...-
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~N~   80 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNL   80 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHHHH
Confidence            8999999999999999999999999999999998776554 346542    2222222   1268999999999887554


Q ss_pred             HHhhccccccCCccEEEEcCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .+..+. ..+++..+|+-+..
T Consensus        81 ~~~~~~-k~~~~~~iI~~~~~  100 (132)
T d1lssa_          81 MSSLLA-KSYGINKTIARISE  100 (132)
T ss_dssp             HHHHHH-HHTTCCCEEEECSS
T ss_pred             HHHHHH-HHcCCceEEEEecC
Confidence            444442 23555667665543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.48  E-value=1.7e-07  Score=76.97  Aligned_cols=96  Identities=20%  Similarity=0.281  Sum_probs=69.3

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCc-HHHHHhCCCce--ecChhhHhhcCCCEEEEecCchh--
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHS-PAVRQQLNAPF--FADLNDLCELHPDVVLLSTSILS--  100 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~-~~~a~~~g~~~--~~~~~~~~~~~aDvVIlavp~~~--  100 (335)
                      ...+..+|.|||+|.||..++..|...|+ ++++++|+.+. .+.+.+.|...  ..+..+.+ .++|+||.||+...  
T Consensus        20 ~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l-~~~Divi~atss~~~i   98 (159)
T d1gpja2          20 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHL-ARSDVVVSATAAPHPV   98 (159)
T ss_dssp             SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHH-HTCSEEEECCSSSSCC
T ss_pred             CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHh-ccCCEEEEecCCCCcc
Confidence            35678899999999999999999999998 79999999754 45667766542  44556666 79999999998653  


Q ss_pred             -HHHHHhhccc-cccCCccEEEEcC
Q 044593          101 -TQSVLKSIPF-QRLKRSTLFVDVL  123 (335)
Q Consensus       101 -~~~vl~~l~~-~~l~~~~iVvd~~  123 (335)
                       ..+.++.... ...++..+|+|++
T Consensus        99 i~~~~i~~~~~~r~~~~~~~iiDla  123 (159)
T d1gpja2          99 IHVDDVREALRKRDRRSPILIIDIA  123 (159)
T ss_dssp             BCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             ccHhhhHHHHHhcccCCCeEEEeec
Confidence             2444443311 1122345899985

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.45  E-value=1.3e-07  Score=74.96  Aligned_cols=91  Identities=19%  Similarity=0.233  Sum_probs=63.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ecCh---hhHhhcCCCEEEEecCchhHHHH
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FADL---NDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~~~---~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      +++.|||+|.+|..+|..|.+.|++|+++|.|++..+.+.+.|...    .++.   .++-..++|.+|++++.+....+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~   80 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST   80 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence            4789999999999999999999999999999998887777776532    1222   22211689999999997754333


Q ss_pred             H-hhccccccCCccEEEEcC
Q 044593          105 L-KSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       105 l-~~l~~~~l~~~~iVvd~~  123 (335)
                      + ..+. ...+...+++-+.
T Consensus        81 ~~~~~~-~~~~~~~iiar~~   99 (134)
T d2hmva1          81 LTTLLL-KELDIPNIWVKAQ   99 (134)
T ss_dssp             HHHHHH-HHTTCSEEEEECC
T ss_pred             HHHHHH-HHcCCCcEEeecc
Confidence            3 2222 2333444555443

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=4.6e-07  Score=72.71  Aligned_cols=89  Identities=17%  Similarity=0.313  Sum_probs=58.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC--------CCce-ecChhhHhhcCCCEEEEecCch
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL--------NAPF-FADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~--------g~~~-~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      |||+|||+|.+|+++|..+...+.  ++.++|++++..+ .+.+.        .... ..+.++ + +++|+||++....
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~-~-~~adivvitag~~   78 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYAD-L-KGSDVVIVAAGVP   78 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGG-G-TTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHH-h-cCCCEEEEecccc
Confidence            799999999999999999998875  8999999975432 12211        1112 234444 4 7999999986321


Q ss_pred             ----h------------HHHHHhhccccccCCccEEEEcCC
Q 044593          100 ----S------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 ----~------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                          .            +.++.+.+.  ...|+++++.++.
T Consensus        79 ~~~g~~r~dl~~~N~~I~~~i~~~i~--~~~p~aivivvtN  117 (140)
T d1a5za1          79 QKPGETRLQLLGRNARVMKEIARNVS--KYAPDSIVIVVTN  117 (140)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHH--HHCTTCEEEECSS
T ss_pred             cCCCcchhhhhccccchHHHHHHHHH--hcCCCcEEEEeCC
Confidence                1            233444443  2457777777764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=5.2e-07  Score=73.94  Aligned_cols=100  Identities=9%  Similarity=0.161  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH--HHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST--QSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~--~~vl~  106 (335)
                      ..+++++|+|+|.+|..+|..++..|.+|+++|++|...-.|.-.|.... ..++++ ..+|++|.||....+  .+-+ 
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~-~~adivvtaTGn~~vI~~eh~-   98 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEAC-QEGNIFVTTTGCIDIILGRHF-   98 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHT-TTCSEEEECSSCSCSBCHHHH-
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhh-hhccEEEecCCCccchhHHHH-
Confidence            46789999999999999999999999999999999854433556676554 566776 789999999986542  3333 


Q ss_pred             hccccccCCccEEEEcCCCCch-HHHHHHh
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEF-PRNLFLK  135 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~-~~~~l~~  135 (335)
                          ..+|+++++.++++.... -+..+.+
T Consensus        99 ----~~MKdgaIL~N~Ghfd~EId~~~L~~  124 (163)
T d1li4a1          99 ----EQMKDDAIVCNIGHFDVEIDVKWLNE  124 (163)
T ss_dssp             ----TTCCTTEEEEECSSSTTSBCHHHHHH
T ss_pred             ----HhccCCeEEEEeccccceecHHHHhh
Confidence                347799999999876543 2344544

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.42  E-value=3.7e-07  Score=75.56  Aligned_cols=86  Identities=21%  Similarity=0.288  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CCeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      |+.+||+|||+|.||..++.++.+. ++++ .++|++++...   ..+.....+..++. .+.|+|++|||.....++..
T Consensus         1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~-~~~D~Vvi~tp~~~h~~~a~   76 (170)
T d1f06a1           1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHA-DDVDVLFLCMGSATDIPEQA   76 (170)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTT-TTCSEEEECSCTTTHHHHHH
T ss_pred             CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhc-cccceEEEeCCCcccHHHHH
Confidence            5678999999999999999999875 4665 46788875432   22333444555555 78999999999998766665


Q ss_pred             hccccccCCccEEEEc
Q 044593          107 SIPFQRLKRSTLFVDV  122 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~  122 (335)
                      ..    +..|.-++++
T Consensus        77 ~a----L~aG~~vv~~   88 (170)
T d1f06a1          77 PK----FAQFACTVDT   88 (170)
T ss_dssp             HH----HTTTSEEECC
T ss_pred             HH----HHCCCcEEEe
Confidence            44    4567666654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.40  E-value=9.6e-07  Score=71.97  Aligned_cols=68  Identities=15%  Similarity=0.162  Sum_probs=50.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHh-------CCC----ceecChhhHhhcCCCEEEEe
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQ-------LNA----PFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~-------~g~----~~~~~~~~~~~~~aDvVIla   95 (335)
                      .+.+||+|||+|.+|+++|..+...++ +++++|.+++..+ .+.+       .+.    ...++.++.+ +++|+||++
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~adiVvit   83 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL-TGADCVIVT   83 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH-TTCSEEEEC
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhh-cCCCeEEEe
Confidence            467899999999999999999988886 8999999987543 2222       121    1234555556 799999997


Q ss_pred             cC
Q 044593           96 TS   97 (335)
Q Consensus        96 vp   97 (335)
                      ..
T Consensus        84 ag   85 (154)
T d1pzga1          84 AG   85 (154)
T ss_dssp             CS
T ss_pred             cc
Confidence            73

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.39  E-value=5.3e-07  Score=73.05  Aligned_cols=93  Identities=16%  Similarity=0.269  Sum_probs=61.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC---------CCce-ecChhhHhhcCCCEEEE
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL---------NAPF-FADLNDLCELHPDVVLL   94 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~---------g~~~-~~~~~~~~~~~aDvVIl   94 (335)
                      +....||+|||+|.+|+++|..+...|.  ++.++|++++..+ .+.++         .... ..+.++ + ++||+||+
T Consensus         3 ~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~-l-~daDvvvi   80 (148)
T d1ldna1           3 NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD-C-RDADLVVI   80 (148)
T ss_dssp             TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG-T-TTCSEEEE
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH-h-ccceeEEE
Confidence            4467899999999999999999999886  8999999876432 22221         1122 334444 4 79999999


Q ss_pred             ecCchh----------------HHHHHhhccccccCCccEEEEcCC
Q 044593           95 STSILS----------------TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        95 avp~~~----------------~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +.....                +.++.+.+. . ..|+.+++-++.
T Consensus        81 tag~~~~~~~~R~dl~~~N~~i~~~i~~~i~-~-~~p~a~~ivvtN  124 (148)
T d1ldna1          81 CAGANQKPGETRLDLVDKNIAIFRSIVESVM-A-SGFQGLFLVATN  124 (148)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHH-H-HTCCSEEEECSS
T ss_pred             ecccccccCcchhHHHHHHHHHHHHHHHHHH-h-hCCCceEEEecC
Confidence            764321                244445553 2 346667776654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.39  E-value=7.2e-07  Score=72.08  Aligned_cols=64  Identities=23%  Similarity=0.327  Sum_probs=46.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHh-------CCC---ceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQ-------LNA---PFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~-------~g~---~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      +||+|||+|.+|+++|..|...|.  ++.++|++++..+ .+.+       .+.   ....+.+++  ++||+||++..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l--~~adiVVitaG   78 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAAL--ADADVVISTLG   78 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGG--TTCSEEEECCS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHh--ccccEEEEecc
Confidence            699999999999999999998885  8999999976432 1111       111   123444554  79999999854

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.35  E-value=9.9e-07  Score=70.92  Aligned_cols=89  Identities=12%  Similarity=0.153  Sum_probs=60.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHh-------CCC----ceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQ-------LNA----PFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~-------~g~----~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |||+|||+|.+|+++|..+...|.  ++.++|++++..+ .+.+       .+.    ....+.+++  +++|+||++..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~--~~adiVvitag   78 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLL--KGSEIIVVTAG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGG--TTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHh--ccccEEEEecc
Confidence            899999999999999999998885  8999999976532 1211       111    123455554  79999999774


Q ss_pred             ch----------------hHHHHHhhccccccCCccEEEEcCC
Q 044593           98 IL----------------STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~----------------~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..                .+.++.+.+.  ...++++++.+++
T Consensus        79 ~~~~~g~~r~~l~~~n~~i~~~i~~~i~--~~~p~aivivvtN  119 (142)
T d1ojua1          79 LARKPGMTRLDLAHKNAGIIKDIAKKIV--ENAPESKILVVTN  119 (142)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHH--TTSTTCEEEECSS
T ss_pred             ccCCCCCchHHHHHHhhHHHHHHHHHHH--hhCCCcEEEEecC
Confidence            21                1233444442  2456778888765

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.34  E-value=1.1e-06  Score=70.42  Aligned_cols=89  Identities=21%  Similarity=0.324  Sum_probs=59.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC---------CCc--eecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL---------NAP--FFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~---------g~~--~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |||+|||+|.+|+++|..+...|.  ++.++|++++..+ .+.+.         ...  ..++.++ + +++|+||++.-
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~-~-~dadvvvitag   78 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-T-ANSDIVIITAG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-G-TTCSEEEECCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHH-h-cCCeEEEEEEe
Confidence            799999999999999999999884  8999999987543 11111         111  2344444 4 79999999863


Q ss_pred             ch----------------hHHHHHhhccccccCCccEEEEcCC
Q 044593           98 IL----------------STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~----------------~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..                .+.++.+.+. . ..|+++++.++.
T Consensus        79 ~~~~~g~~r~~l~~~N~~i~~~i~~~i~-~-~~p~aivivvtN  119 (142)
T d1guza1          79 LPRKPGMTREDLLMKNAGIVKEVTDNIM-K-HSKNPIIIVVSN  119 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHH-H-HCSSCEEEECCS
T ss_pred             cCCCCCCchHHHHHHHHHHHHHHHHHhh-c-cCCCeEEEEecC
Confidence            11                1344444553 2 347778777754

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=8.3e-07  Score=72.68  Aligned_cols=77  Identities=23%  Similarity=0.343  Sum_probs=60.0

Q ss_pred             CCeEEEEcccHHHHH-HHHHHHHc-CCeE-EEEcCCCCcH-HHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGFGNFGQF-LAKAFARH-HHTL-LVHSRSDHSP-AVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~s-iA~~L~~~-G~~V-~~~dr~~~~~-~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      .+||||||+|.||.. ....+... ++++ .++|++++.. +.+.+.++..+++.+++. ++.|+|++|+|+..-.++..
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~-~~~D~V~I~tp~~~h~~~~~   79 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLA-ASCDAVFVHSSTASHFDVVS   79 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHH-TTCSEEEECSCTTHHHHHHH
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhh-hhcccccccccchhcccccc
Confidence            368999999999986 56666654 5665 5789998765 455677888888888887 79999999999987666665


Q ss_pred             hc
Q 044593          107 SI  108 (335)
Q Consensus       107 ~l  108 (335)
                      ..
T Consensus        80 ~a   81 (164)
T d1tlta1          80 TL   81 (164)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.23  E-value=2.6e-06  Score=69.52  Aligned_cols=93  Identities=20%  Similarity=0.190  Sum_probs=62.7

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHHcC-CeEE-EEcCCCCc--HHHHHhCCCceecC-hhhHh----hcCCCEEEEecCch
Q 044593           30 TSLKIAVIGFGNFGQF-LAKAFARHH-HTLL-VHSRSDHS--PAVRQQLNAPFFAD-LNDLC----ELHPDVVLLSTSIL   99 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~s-iA~~L~~~G-~~V~-~~dr~~~~--~~~a~~~g~~~~~~-~~~~~----~~~aDvVIlavp~~   99 (335)
                      +.+||||||+|.+|+- +...++... .+++ +.+|+++.  .+.+.+.|+....+ .+++.    ..+.|+|++|||..
T Consensus         3 kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag   82 (157)
T d1nvmb1           3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS   82 (157)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCch
Confidence            4579999999999985 567776654 3664 55888764  45688888876543 23222    14689999999986


Q ss_pred             hHHHHHhhccccccCCccEEEEcCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .-.+-....  ...+.|..|+|.++
T Consensus        83 ~h~~~~~~~--~aa~~G~~VID~s~  105 (157)
T d1nvmb1          83 AHVQNEALL--RQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHHHHHHHH--HHHCTTCEEEECST
T ss_pred             hHHHhHHHH--HHHHcCCEEEEccc
Confidence            533222111  12568999999986

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=98.21  E-value=1.5e-06  Score=70.81  Aligned_cols=93  Identities=10%  Similarity=0.131  Sum_probs=73.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhH--HHHHh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILST--QSVLK  106 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~--~~vl~  106 (335)
                      ..++++.|+|+|.+|..+|..++..|.+|+++++||-..-.|.-.|... .+.++++ +.+|++|.+|....+  .+-+ 
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~-~~aDi~vTaTGn~~vI~~~h~-   97 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIV-DKGDFFITCTGNVDVIKLEHL-   97 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHT-TTCSEEEECCSSSSSBCHHHH-
T ss_pred             ecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHcc-ccCcEEEEcCCCCccccHHHH-
Confidence            4678999999999999999999999999999999995433355567765 4567777 899999999987642  3333 


Q ss_pred             hccccccCCccEEEEcCCCCch
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEF  128 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~  128 (335)
                          ..+|++++|.+++.....
T Consensus        98 ----~~MKdgaIl~N~GHfd~E  115 (163)
T d1v8ba1          98 ----LKMKNNAVVGNIGHFDDE  115 (163)
T ss_dssp             ----TTCCTTCEEEECSSTTTS
T ss_pred             ----HHhhCCeEEEeccccchh
Confidence                346799999999876543

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.21  E-value=1.4e-06  Score=71.53  Aligned_cols=77  Identities=19%  Similarity=0.299  Sum_probs=58.6

Q ss_pred             CeEEEEcccHHHHH-HHHHHHHc-CCeEEEEcCCCCcH-HHHHhCCCc-eecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           32 LKIAVIGFGNFGQF-LAKAFARH-HHTLLVHSRSDHSP-AVRQQLNAP-FFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        32 ~kI~IIG~G~mG~s-iA~~L~~~-G~~V~~~dr~~~~~-~~a~~~g~~-~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      +||||||+|.||.. ....+.+. +.++.++|++++.. ..+.+.++. .+++.++++..+.|+|++|+|+..-.+++..
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~~   81 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAF   81 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccccccc
Confidence            69999999999976 56677665 45888999988654 445666764 4567777663578999999999987777665


Q ss_pred             c
Q 044593          108 I  108 (335)
Q Consensus       108 l  108 (335)
                      .
T Consensus        82 a   82 (167)
T d1xeaa1          82 F   82 (167)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.21  E-value=2.2e-06  Score=70.20  Aligned_cols=91  Identities=15%  Similarity=0.205  Sum_probs=60.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC-------CCc---eecChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL-------NAP---FFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~-------g~~---~~~~~~~~~~~~aDvVIlav   96 (335)
                      ...||+|||+|.+|+++|..+...|.  ++.++|++++..+ .+.++       +..   ...+.+++  ++||+||++.
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~--~~adiVVitA   96 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVT--ANSKIVVVTA   96 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGG--TTCSEEEECC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhc--ccccEEEEec
Confidence            45799999999999999999999997  8999999875432 22221       111   12344444  7999999976


Q ss_pred             Cch----------------hHHHHHhhccccccCCccEEEEcCC
Q 044593           97 SIL----------------STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        97 p~~----------------~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      -..                .+.++.+.+.  ...++.+++-++.
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~--~~~p~aiiivvtN  138 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIV--KYSPDCIIIVVSN  138 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHH--HHCTTCEEEECSS
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHH--hcCCCcEEEEeCC
Confidence            321                1334444553  2456777777654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.20  E-value=4.1e-06  Score=67.12  Aligned_cols=64  Identities=20%  Similarity=0.292  Sum_probs=48.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhC---------CC--ceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQL---------NA--PFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~---------g~--~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      +||+|||+|.+|+++|..|...+. ++.++|++++..+ .+.+.         ..  ....+..++  .++|+||++..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~--~~advvvitag   78 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADT--ANSDVIVVTSG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGG--TTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHh--cCCCEEEEeee
Confidence            599999999999999999998886 8999999887532 22221         11  224455665  79999999884

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.18  E-value=5.9e-06  Score=66.21  Aligned_cols=63  Identities=22%  Similarity=0.332  Sum_probs=43.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcH-HHHHhC--CCc-------eecChhhHhhcCCCEEEEec
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSP-AVRQQL--NAP-------FFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~-~~a~~~--g~~-------~~~~~~~~~~~~aDvVIlav   96 (335)
                      +||+|||+|.+|+++|..+...+.  ++.++|++++.. ..+.++  ...       ...+..+ + ++||+||++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~-~-~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD-V-KDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG-G-TTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHH-h-CCCceEEEec
Confidence            599999999999999999999886  899999998643 223332  111       1223444 4 7999999984

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.16  E-value=3.7e-06  Score=67.49  Aligned_cols=64  Identities=23%  Similarity=0.282  Sum_probs=46.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC-------CC---ceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL-------NA---PFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~-------g~---~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      .||+|||+|.+|+++|..+...|.  ++.++|++++..+ .+.++       +.   ....+.++ + +++|+||++.-
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~-~-~daDvVVitaG   78 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI-C-RDADMVVITAG   78 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG-G-TTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHH-h-hCCcEEEEecc
Confidence            589999999999999999999886  8999999986432 12211       11   12344454 4 78999999773

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.15  E-value=8.1e-06  Score=65.97  Aligned_cols=65  Identities=18%  Similarity=0.315  Sum_probs=46.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHH-HHHhC-------CC--ce--ecChhhHhhcCCCEEEEecC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPA-VRQQL-------NA--PF--FADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~-~a~~~-------g~--~~--~~~~~~~~~~~aDvVIlavp   97 (335)
                      ..||+|||+|.+|+++|..+...+. ++.++|++++..+ .+.++       +.  ..  ..+.+++  +++|+||++.-
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~--~~advvvitag   80 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDL--AGADVVIVTAG   80 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGG--TTCSEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccccccc--CCCcEEEEecc
Confidence            4699999999999999998888775 8999999986532 22221       11  12  2334444  79999999874

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.15  E-value=1.2e-06  Score=72.33  Aligned_cols=116  Identities=15%  Similarity=0.183  Sum_probs=74.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcH-HHHHhCCCceecChhhHhhcCCCEEEEecCchhHHH---
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSP-AVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQS---  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~-~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~---  103 (335)
                      .+.++|.|||+|..|.+++.+|.+.|. +|++++|+.+.. ..+...+.....+...   .++|+||-|||......   
T Consensus        15 ~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~~---~~~DliINaTpiGm~~~~~~   91 (167)
T d1npya1          15 NKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLEN---QQADILVNVTSIGMKGGKEE   91 (167)
T ss_dssp             CTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTT---CCCSEEEECSSTTCTTSTTT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcccc---cchhhheeccccCCcccccc
Confidence            356799999999999999999999997 799999998754 3444455544333222   57999999999653211   


Q ss_pred             HHhhccccccCCccEEEEcCC--CCchHHHHHHhhCCCCCceEeccccC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLS--VKEFPRNLFLKYLPQDFDILCTHPMF  150 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~S--vK~~~~~~l~~~l~~~~~~v~~HPma  150 (335)
                      .--.+....++++.+|+|+.=  ..+..++..++   .+..++.+-.|.
T Consensus        92 ~~l~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~---~G~~~i~Gl~Ml  137 (167)
T d1npya1          92 MDLAFPKAFIDNASVAFDVVAMPVETPFIRYAQA---RGKQTISGAAVI  137 (167)
T ss_dssp             TSCSSCHHHHHHCSEEEECCCSSSSCHHHHHHHH---TTCEEECHHHHH
T ss_pred             ccccccHhhcCCcceEEEEeeccCCCHHHHHHHH---CCCeEEECHHHH
Confidence            100111122557789999842  22334444433   344555554443

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=2.8e-06  Score=69.45  Aligned_cols=94  Identities=17%  Similarity=0.176  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH-HHHhC-------CC---ceecChhhHhhcCCCEEEEe
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDHSPA-VRQQL-------NA---PFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~-~a~~~-------g~---~~~~~~~~~~~~~aDvVIla   95 (335)
                      ++..||+|||+|.+|+++|..|...|.  ++.++|++++..+ .+.++       +.   ....+.+++  .++|+||++
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~--~~adivvit   94 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVS--ANSKLVIIT   94 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGG--TTEEEEEEC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhh--ccccEEEEe
Confidence            456799999999999999999999886  8999999975432 22221       11   123455554  799999997


Q ss_pred             cCch------------hHHHHHhhccc--cccCCccEEEEcCC
Q 044593           96 TSIL------------STQSVLKSIPF--QRLKRSTLFVDVLS  124 (335)
Q Consensus        96 vp~~------------~~~~vl~~l~~--~~l~~~~iVvd~~S  124 (335)
                      ....            ....+++++..  ....++.+++.+++
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            7431            12333333321  12457778887764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=2.4e-06  Score=70.45  Aligned_cols=105  Identities=13%  Similarity=0.116  Sum_probs=70.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhC---CCceecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQL---NAPFFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~---g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      .++++|.|+|+|..+.+++.+|.+.|.+|++++|+.+..+ .+...   +.....+..+....++|+||-|||.....+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~~~   95 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDI   95 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTCC
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcccCC
Confidence            3578999999999999999999999999999999986543 23322   2211222233221579999999998864332


Q ss_pred             HhhccccccCCccEEEEcCCC--CchHHHHHH
Q 044593          105 LKSIPFQRLKRSTLFVDVLSV--KEFPRNLFL  134 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~Sv--K~~~~~~l~  134 (335)
                      . .+....++++.+|+|+.=.  .+..++..+
T Consensus        96 ~-~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~  126 (170)
T d1nyta1          96 P-AIPSSLIHPGIYCYDMFYQKGKTPFLAWCE  126 (170)
T ss_dssp             C-CCCGGGCCTTCEEEESCCCSSCCHHHHHHH
T ss_pred             C-CCcHHHhccCcEEEEeecCCCCCHHHHHHH
Confidence            1 2222457889999998532  334444443

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=2.3e-06  Score=71.34  Aligned_cols=118  Identities=11%  Similarity=0.045  Sum_probs=74.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHh----C----CCce----ecC---hhhHhhcCCCEE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQ----L----NAPF----FAD---LNDLCELHPDVV   92 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~----~----g~~~----~~~---~~~~~~~~aDvV   92 (335)
                      .+.++|.|||+|.+|.+++.+|.+.|. ++++++|+++..+.+.+    .    ....    ..+   ..+.. .++|+|
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dii   94 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEAL-ASADIL   94 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHH-HTCSEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhh-ccccee
Confidence            356899999999999999999999987 79999999876543321    1    1111    112   22333 689999


Q ss_pred             EEecCchhHHHHHhhcc--ccccCCccEEEEcCC--CCchHHHHHHhhCCCCCceEeccccC
Q 044593           93 LLSTSILSTQSVLKSIP--FQRLKRSTLFVDVLS--VKEFPRNLFLKYLPQDFDILCTHPMF  150 (335)
Q Consensus        93 Ilavp~~~~~~vl~~l~--~~~l~~~~iVvd~~S--vK~~~~~~l~~~l~~~~~~v~~HPma  150 (335)
                      |-|||.......-+.+.  ...++++.+++|+.=  ..+..++..+   ..+.+++.+..|.
T Consensus        95 IN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T~ll~~a~---~~g~~~i~Gl~Ml  153 (182)
T d1vi2a1          95 TNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQ---QAGCKTIDGYGML  153 (182)
T ss_dssp             EECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSCHHHHHHH---TTTCEEECHHHHH
T ss_pred             ccccCCccccccchhhhhHHHhhhcchhhHHhhcCccccHHHHHHH---HCcCeEeccHHHH
Confidence            99999764321111211  134778899999852  2233333333   2455677666554

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.07  E-value=4.3e-06  Score=69.53  Aligned_cols=77  Identities=18%  Similarity=0.179  Sum_probs=59.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHHc-CCeEE-EEcCCCCcH-HHHHhCCC----ceecChhhHhh-cCCCEEEEecCchhHHH
Q 044593           32 LKIAVIGFGNFGQFLAKAFARH-HHTLL-VHSRSDHSP-AVRQQLNA----PFFADLNDLCE-LHPDVVLLSTSILSTQS  103 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~-G~~V~-~~dr~~~~~-~~a~~~g~----~~~~~~~~~~~-~~aDvVIlavp~~~~~~  103 (335)
                      +||||||+|.||...+..+... +++|+ ++|++++.. +.+.+.++    ..+++.++++. .+.|+|++|+|...-.+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            6899999999999999999876 56775 679987654 44555664    35678888752 46899999999998766


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      ++...
T Consensus        82 ~~~~~   86 (184)
T d1ydwa1          82 WAIKA   86 (184)
T ss_dssp             HHHHH
T ss_pred             hhhhh
Confidence            66654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=3.9e-06  Score=69.71  Aligned_cols=80  Identities=16%  Similarity=0.240  Sum_probs=59.7

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHHcC--CeEE-EEcCCCCcHH-HHHhCCCc-eecChhhHhh-cCCCEEEEecCchhH
Q 044593           29 STSLKIAVIGFGNFGQF-LAKAFARHH--HTLL-VHSRSDHSPA-VRQQLNAP-FFADLNDLCE-LHPDVVLLSTSILST  101 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~s-iA~~L~~~G--~~V~-~~dr~~~~~~-~a~~~g~~-~~~~~~~~~~-~~aDvVIlavp~~~~  101 (335)
                      |+.+||||||+|.+|.. ...++.+.+  ++|+ ++|++++..+ .+.+.+.. .+++.++++. .+.|+|++|||+..-
T Consensus         1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h   80 (181)
T d1zh8a1           1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN   80 (181)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccc
Confidence            56679999999999987 577777643  4665 6799886553 34555664 5678888762 368999999999987


Q ss_pred             HHHHhhc
Q 044593          102 QSVLKSI  108 (335)
Q Consensus       102 ~~vl~~l  108 (335)
                      .+++..+
T Consensus        81 ~~~~~~a   87 (181)
T d1zh8a1          81 LPFIEKA   87 (181)
T ss_dssp             HHHHHHH
T ss_pred             ccccccc
Confidence            7777665

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.07  E-value=1.2e-06  Score=72.17  Aligned_cols=73  Identities=21%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             CeEEEE-cccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-C---C---CceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           32 LKIAVI-GFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-L---N---APFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        32 ~kI~II-G~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-~---g---~~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      |||+|| |+|.||..+|..|.++||+|++++|+++..+...+ .   +   .....+..... ...+....+.+......
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   79 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAA-EACDIAVLTIPWEHAID   79 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHH-HHCSEEEECSCHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeecccccc-chhhhhhhheeeeccch
Confidence            899999 79999999999999999999999999876543322 1   1   11222233332 45677777777665444


Q ss_pred             HH
Q 044593          104 VL  105 (335)
Q Consensus       104 vl  105 (335)
                      .+
T Consensus        80 ~~   81 (212)
T d1jaya_          80 TA   81 (212)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.06  E-value=1.2e-05  Score=62.15  Aligned_cols=103  Identities=16%  Similarity=0.141  Sum_probs=77.8

Q ss_pred             CeEEEEcc----cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           32 LKIAVIGF----GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        32 ~kI~IIG~----G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ++|+|||+    |..|..+.+.|.+.||+|+.+.++.+..     .|...+.++.++- ...|++++++|...+.+++++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp-~~~D~vvi~vp~~~~~~~l~~   75 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELP-KDVDVIVFVVPPKVGLQVAKE   75 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSC-TTCCEEEECSCHHHHHHHHHH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhcc-ccceEEEEEeCHHHHHHHHHH
Confidence            68999994    7899999999999999999887765544     3777788888886 678999999999999999998


Q ss_pred             ccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEe
Q 044593          108 IPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC  145 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~  145 (335)
                      ...  .....+++..++......+.+++   .+.++++
T Consensus        76 ~~~--~g~k~v~~~~g~~~~~~~~~a~~---~gi~vig  108 (116)
T d1y81a1          76 AVE--AGFKKLWFQPGAESEEIRRFLEK---AGVEYSF  108 (116)
T ss_dssp             HHH--TTCCEEEECTTSCCHHHHHHHHH---HTCEEEC
T ss_pred             HHh--cCCceEEeccchhhHHHHHHHHH---cCCEEEc
Confidence            742  44556777766554444444433   2456665

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=9.2e-06  Score=66.60  Aligned_cols=90  Identities=14%  Similarity=0.150  Sum_probs=65.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCcee-----cChhhHh-------hcCCCEEEEe
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLC-------ELHPDVVLLS   95 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~-------~~~aDvVIla   95 (335)
                      ..+.+|.|+|+|.+|...+..++..|. +|+++|++++.++.+++.|....     .+..+..       -..+|+||-|
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~  104 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  104 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEec
Confidence            356799999999999999999999998 79999999999999999998531     2222221       0368999999


Q ss_pred             cCchhHHH-HHhhccccccCCccEEEEcC
Q 044593           96 TSILSTQS-VLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus        96 vp~~~~~~-vl~~l~~~~l~~~~iVvd~~  123 (335)
                      +......+ .++-     ++++..++-++
T Consensus       105 ~G~~~~~~~a~~~-----~~~gG~iv~~G  128 (171)
T d1pl8a2         105 TGAEASIQAGIYA-----TRSGGTLVLVG  128 (171)
T ss_dssp             SCCHHHHHHHHHH-----SCTTCEEEECS
T ss_pred             cCCchhHHHHHHH-----hcCCCEEEEEe
Confidence            98765433 3333     44555655554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=3.2e-06  Score=62.62  Aligned_cols=66  Identities=14%  Similarity=0.072  Sum_probs=46.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc--HHHHHhCCCce-ec-ChhhHhhcCCCEEEEecC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS--PAVRQQLNAPF-FA-DLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~--~~~a~~~g~~~-~~-~~~~~~~~~aDvVIlavp   97 (335)
                      +++||+|+|+|..|.++|+.|.+.|++|+++|.++..  .+... .+... .. ...... .++|+||++.-
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~d~vi~SPG   73 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWL-MAADLIVASPG   73 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSC-TTSCEEESBCCHHHH-HHCSEEEECTT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHh-hccceeecccchhhh-ccCCEEEECCC
Confidence            5789999999999999999999999999999986642  22222 23322 11 113334 67898888643

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.98  E-value=1.9e-05  Score=62.95  Aligned_cols=104  Identities=12%  Similarity=0.014  Sum_probs=78.7

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGF----GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~----G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      .++|+|||+    |..|..++..|.+.||+|+.+++......     |...+.++.++- ...|++++++|+..+.++++
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~-----G~~~~~sl~dlp-~~iD~v~i~vp~~~~~~~~~   92 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVL-----GRKCYPSVLDIP-DKIEVVDLFVKPKLTMEYVE   92 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEET-----TEECBSSGGGCS-SCCSEEEECSCHHHHHHHHH
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccC-----CCcccccccccC-ccceEEEEEeCHHHHHHHHH
Confidence            568999995    78999999999999999998887754443     777788888876 68999999999999999999


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEe
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC  145 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~  145 (335)
                      ++..  .....+++-.++......+.+++   .+..+++
T Consensus        93 e~~~--~g~k~v~~~~G~~~ee~~~~a~~---~gi~vig  126 (139)
T d2d59a1          93 QAIK--KGAKVVWFQYNTYNREASKKADE---AGLIIVA  126 (139)
T ss_dssp             HHHH--HTCSEEEECTTCCCHHHHHHHHH---TTCEEEE
T ss_pred             HHHH--hCCCEEEEeccccCHHHHHHHHH---CCCEEEc
Confidence            8842  45556777666654444333332   3455554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.95  E-value=3.2e-05  Score=64.13  Aligned_cols=89  Identities=13%  Similarity=0.249  Sum_probs=65.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec-----------------------------C
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA-----------------------------D   80 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~-----------------------------~   80 (335)
                      ..-||.|||.|..|..-++.....|..|+++|.+++..+..++++....+                             .
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~  107 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  107 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence            35699999999999999999999999999999999988878777542210                             0


Q ss_pred             hhhHhhcCCCEEEEecCc--hh-----HHHHHhhccccccCCccEEEEcCC
Q 044593           81 LNDLCELHPDVVLLSTSI--LS-----TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        81 ~~~~~~~~aDvVIlavp~--~~-----~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      +.+.+ .++|+||-++-.  ..     .++.++     .+++|.+|+|++.
T Consensus       108 l~~~l-~~aDlVI~talipG~~aP~lit~~mv~-----~Mk~GSVIVDvai  152 (183)
T d1l7da1         108 VLKEL-VKTDIAITTALIPGKPAPVLITEEMVT-----KMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHHH-TTCSEEEECCCCTTSCCCCCSCHHHHT-----TSCTTCEEEETTG
T ss_pred             HHHHH-HhhhhheeeeecCCcccceeehHHHHH-----hcCCCcEEEEEee
Confidence            11223 689999987632  22     344443     4679999999963

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=1.6e-05  Score=63.82  Aligned_cols=64  Identities=28%  Similarity=0.313  Sum_probs=44.0

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHc-C--CeEEEEcCCCCcHHHHHhC-CC---------ceecChhhHhhcCCCEEEEecC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARH-H--HTLLVHSRSDHSPAVRQQL-NA---------PFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~-G--~~V~~~dr~~~~~~~a~~~-g~---------~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      |||+||| .|.+|+++|..|... +  .++.++|.++.....+.++ .+         ....+.++ + +++|+||++.-
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~-~-~~aDvvvitaG   78 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPA-L-EGADVVLISAG   78 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHH-H-TTCSEEEECCS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccc-c-CCCCEEEECCC
Confidence            7999999 599999999988643 4  5899999876443333332 11         11233444 4 79999999763

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.7e-06  Score=70.98  Aligned_cols=69  Identities=17%  Similarity=0.136  Sum_probs=52.0

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce----ec---ChhhHhhcCCCEEEEecCc
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF----FA---DLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~----~~---~~~~~~~~~aDvVIlavp~   98 (335)
                      |.++||.|+| .|.+|+.++..|.++|++|.+++|+++........++..    ..   ++.+++ .++|+||.++..
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al-~~~d~vi~~~g~   77 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTV-AGQDAVIVLLGT   77 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHH-TTCSEEEECCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHh-cCCCEEEEEecc
Confidence            5789999999 699999999999999999999999986543233344432    12   233445 789999998754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.92  E-value=2e-05  Score=64.28  Aligned_cols=90  Identities=14%  Similarity=0.087  Sum_probs=63.8

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-------cChhhHh-------hcCCCEEEE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-------ADLNDLC-------ELHPDVVLL   94 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-------~~~~~~~-------~~~aDvVIl   94 (335)
                      ..+.+|.|+|+|.||...+..++..|.+|+++|++++..+.++++|....       .+..+..       -..+|+||-
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid  104 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  104 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeee
Confidence            35679999999999999999999999999999999999998999887421       1111111       035788888


Q ss_pred             ecCchhH-HHHHhhccccccCCccEEEEcC
Q 044593           95 STSILST-QSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus        95 avp~~~~-~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      |+..... ...++.     ++++..++-++
T Consensus       105 ~~g~~~~~~~a~~~-----~~~~G~iv~~G  129 (170)
T d1e3ja2         105 CSGNEKCITIGINI-----TRTGGTLMLVG  129 (170)
T ss_dssp             CSCCHHHHHHHHHH-----SCTTCEEEECS
T ss_pred             cCCChHHHHHHHHH-----HhcCCceEEEe
Confidence            8876543 333333     34555665554

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.92  E-value=1.6e-05  Score=58.39  Aligned_cols=66  Identities=21%  Similarity=0.338  Sum_probs=51.3

Q ss_pred             CCeEEEEcccHHHH-HHHHHHHHcCCeEEEEcCCCC-cHHHHHhCCCceecC-hhhHhhcCCCEEEEecC
Q 044593           31 SLKIAVIGFGNFGQ-FLAKAFARHHHTLLVHSRSDH-SPAVRQQLNAPFFAD-LNDLCELHPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG~G~mG~-siA~~L~~~G~~V~~~dr~~~-~~~~a~~~g~~~~~~-~~~~~~~~aDvVIlavp   97 (335)
                      .|||-+||.|-+|. ++|+.|.+.|+.|.++|+++. ..+..++.|+..+.. ..+-+ .++|+||.+.-
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i-~~~d~vV~SsA   69 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNW-YDPDLVIKTPA   69 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSC-CCCSEEEECTT
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeeccccc-CCCCEEEEecC
Confidence            48999999999997 789999999999999999875 346678889876432 22223 68999988643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.91  E-value=3.3e-06  Score=69.28  Aligned_cols=94  Identities=12%  Similarity=0.156  Sum_probs=65.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCC---Cce-ec---ChhhHhhcCCCEEEEecC--chh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN---APF-FA---DLNDLCELHPDVVLLSTS--ILS  100 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g---~~~-~~---~~~~~~~~~aDvVIlavp--~~~  100 (335)
                      ..-||.|||.|..|..-++..+..|.+|+++|.+.+..+......   +.. ..   .+.+.+ .++|+||-++-  ...
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~-~~aDivI~aalipG~~  109 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAV-AEADLLIGAVLVPGRR  109 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHH-HTCSEEEECCCCTTSS
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhh-ccCcEEEEeeecCCcc
Confidence            467999999999999999999999999999999987765444431   221 11   234445 79999998773  222


Q ss_pred             HHHHHhhccccccCCccEEEEcCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...++.+-....+++|.+|+|++.
T Consensus       110 aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         110 APILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             CCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             cCeeecHHHHhhcCCCcEEEEeec
Confidence            222222110134679999999973

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.88  E-value=1.3e-05  Score=65.48  Aligned_cols=67  Identities=10%  Similarity=-0.001  Sum_probs=45.8

Q ss_pred             CeEEEEcccHHHHHHHHHH-HH-c----CCeEEEEcCCCCcHHHHHh-------CCC--ceecChhhHhhcCCCEEEEec
Q 044593           32 LKIAVIGFGNFGQFLAKAF-AR-H----HHTLLVHSRSDHSPAVRQQ-------LNA--PFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L-~~-~----G~~V~~~dr~~~~~~~a~~-------~g~--~~~~~~~~~~~~~aDvVIlav   96 (335)
                      |||+|||.|..|.+.+... .. .    +.++.++|++++..+.+.+       ...  ..+++..+.+ ++||+||++.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l-~~aDvVVita   79 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAV-VDAKYVIFQF   79 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHH-TTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCccccc-CCCCEEEEec
Confidence            7999999999988777442 22 2    2489999999876543322       111  2345666666 8999999987


Q ss_pred             Cch
Q 044593           97 SIL   99 (335)
Q Consensus        97 p~~   99 (335)
                      -..
T Consensus        80 ~~~   82 (162)
T d1up7a1          80 RPG   82 (162)
T ss_dssp             CTT
T ss_pred             ccC
Confidence            543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.88  E-value=1.6e-05  Score=65.56  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=47.0

Q ss_pred             CCeEEEEcccHHHHHHHH--HHHH-c---CCeEEEEcCCCCcHHH--------HHhCCC----ceecChhhHhhcCCCEE
Q 044593           31 SLKIAVIGFGNFGQFLAK--AFAR-H---HHTLLVHSRSDHSPAV--------RQQLNA----PFFADLNDLCELHPDVV   92 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~--~L~~-~---G~~V~~~dr~~~~~~~--------a~~~g~----~~~~~~~~~~~~~aDvV   92 (335)
                      .|||+|||+|.+|.+.+.  .+.. .   +.+++++|++++..+.        ....+.    ..++|..+.+ .+||+|
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL-~dad~V   80 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI-IDADFV   80 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH-TTCSEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcc-cCCCeE
Confidence            579999999999976432  2332 2   3599999999865431        111222    2456778877 899999


Q ss_pred             EEecCchh
Q 044593           93 LLSTSILS  100 (335)
Q Consensus        93 Ilavp~~~  100 (335)
                      |.+.-...
T Consensus        81 v~~~~~g~   88 (171)
T d1obba1          81 INTAMVGG   88 (171)
T ss_dssp             EECCCTTH
T ss_pred             eeeccccc
Confidence            99875543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.88  E-value=2.1e-05  Score=66.56  Aligned_cols=79  Identities=25%  Similarity=0.208  Sum_probs=61.9

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchh-HHHHHhh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILS-TQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~-~~~vl~~  107 (335)
                      ..+++|+|.|+|++|..+|+.|.+.|.+|+++|.++.....+...|..... .+++...+||+++-|--... ..+.++.
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~-~~~~~~~~~DI~iPcA~~~~I~~~~a~~  103 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVA-LEDVLSTPCDVFAPCAMGGVITTEVART  103 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECC-GGGGGGCCCSEEEECSCSCCBCHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccC-ccccccccceeeecccccccccHHHHhh
Confidence            467899999999999999999999999999999998877777777775543 34444368999998765444 3556665


Q ss_pred             c
Q 044593          108 I  108 (335)
Q Consensus       108 l  108 (335)
                      +
T Consensus       104 i  104 (201)
T d1c1da1         104 L  104 (201)
T ss_dssp             C
T ss_pred             h
Confidence            5

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.87  E-value=1.7e-05  Score=59.03  Aligned_cols=67  Identities=18%  Similarity=0.192  Sum_probs=51.6

Q ss_pred             CCCeEEEEcccHHH-HHHHHHHHHcCCeEEEEcCCCC-cHHHHHhCCCceec-ChhhHhhcCCCEEEEecC
Q 044593           30 TSLKIAVIGFGNFG-QFLAKAFARHHHTLLVHSRSDH-SPAVRQQLNAPFFA-DLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG~G~mG-~siA~~L~~~G~~V~~~dr~~~-~~~~a~~~g~~~~~-~~~~~~~~~aDvVIlavp   97 (335)
                      ..+||-|||.|-+| +++|+.|.+.|++|+++|+... ..+...+.|+.... ...+.+ .++|+||.+.-
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i-~~~d~vV~S~A   76 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHI-EGASVVVVSSA   76 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGG-TTCSEEEECTT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccC-CCCCEEEECCC
Confidence            56899999999999 6679999999999999999864 34556778986543 223334 68999998644

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.86  E-value=1.1e-05  Score=64.61  Aligned_cols=88  Identities=18%  Similarity=0.177  Sum_probs=57.6

Q ss_pred             eEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhCC-C-c--------eecChhhHhhcCCCEEEEecCch
Q 044593           33 KIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLN-A-P--------FFADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        33 kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~g-~-~--------~~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      ||+|||+ |.+|+++|..|...|.  ++.++|.++...+ +.++. . .        ...+..+.+ ++||+||++....
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~-a~Dl~~~~~~~~~~~~~~~~~~~~~~-~~aDivVitag~~   79 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV-AADLSHIETRATVKGYLGPEQLPDCL-KGCDVVVIPAGVP   79 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH-HHHHTTSSSSCEEEEEESGGGHHHHH-TTCSEEEECCSCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh-hHHHhhhhhhcCCCeEEcCCChHHHh-CCCCEEEECCCcC
Confidence            8999995 9999999999999886  7999999864322 33321 1 0        123334555 7999999975421


Q ss_pred             ----------------hHHHHHhhccccccCCccEEEEcCC
Q 044593          100 ----------------STQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       100 ----------------~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                                      .+.++.+.+. . ..++.+|+-+++
T Consensus        80 ~~~g~sR~~ll~~N~~i~~~i~~~i~-~-~~p~~iiivvtN  118 (144)
T d1mlda1          80 RKPGMTRDDLFNTNATIVATLTAACA-Q-HCPDAMICIISN  118 (144)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHH-H-HCTTSEEEECSS
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHH-h-cCCCeEEEEecC
Confidence                            1344555553 2 356677776654

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=97.80  E-value=1.7e-05  Score=67.97  Aligned_cols=80  Identities=13%  Similarity=0.216  Sum_probs=57.8

Q ss_pred             CCCCeEEEEcccHHHHH-HHHHHHHc-CCeEE-EEcCCCCcH-HHHHhCCCc-----eecChhhHhh-cCCCEEEEecCc
Q 044593           29 STSLKIAVIGFGNFGQF-LAKAFARH-HHTLL-VHSRSDHSP-AVRQQLNAP-----FFADLNDLCE-LHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~s-iA~~L~~~-G~~V~-~~dr~~~~~-~~a~~~g~~-----~~~~~~~~~~-~~aDvVIlavp~   98 (335)
                      .+.-||+|||+|.||.. +...+... +++|+ ++|++++.. ..+++.|+.     .++|.++++. .+.|+|++|||.
T Consensus        31 ~~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~  110 (221)
T d1h6da1          31 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN  110 (221)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred             CCCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccch
Confidence            35569999999999974 56666654 56765 789998764 455666763     3567788762 368999999999


Q ss_pred             hhHHHHHhhc
Q 044593           99 LSTQSVLKSI  108 (335)
Q Consensus        99 ~~~~~vl~~l  108 (335)
                      ..-.++....
T Consensus       111 ~~H~~~~~~a  120 (221)
T d1h6da1         111 SLHAEFAIRA  120 (221)
T ss_dssp             GGHHHHHHHH
T ss_pred             hhhhhHHHHh
Confidence            9866665544

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.77  E-value=5.8e-05  Score=57.49  Aligned_cols=91  Identities=11%  Similarity=0.048  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH--HHHHhCCCcee---cChhhHhhcCCCEEEEecCchhHH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP--AVRQQLNAPFF---ADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~--~~a~~~g~~~~---~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      +.++++|.|||.|.+|..-++.|.+.|.+|+++++.....  ..+.+.++...   -+..++  .++++|+.|+......
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl--~~~~lv~~at~d~~~n   86 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLL--DSCWLAIAATDDDTVN   86 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGG--TTCSEEEECCSCHHHH
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHh--CCCcEEeecCCCHHHH
Confidence            4568899999999999999999999999999998876532  33333344322   122333  6899999999888765


Q ss_pred             HHHhhccccccCCccEEEEcCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .-+...    .++..+.+++..
T Consensus        87 ~~i~~~----a~~~~ilVNv~D  104 (113)
T d1pjqa1          87 QRVSDA----AESRRIFCNVVD  104 (113)
T ss_dssp             HHHHHH----HHHTTCEEEETT
T ss_pred             HHHHHH----HHHcCCEEEeCC
Confidence            433332    223346666654

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=4.9e-05  Score=60.92  Aligned_cols=91  Identities=15%  Similarity=0.144  Sum_probs=58.4

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHc-CC---eEEEEcCCCCcH---HHHHhCCCce-ecChhhHhhcCCCEEEEecCchhH
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARH-HH---TLLVHSRSDHSP---AVRQQLNAPF-FADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~-G~---~V~~~dr~~~~~---~~a~~~g~~~-~~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      |+||+||| .|.+|+-+.+.|.+. .+   +++.+..+....   .......... ..+..++  .++|++|+|+|.+..
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~--~~~DivF~a~~~~~s   78 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEAL--KALDIIVTCQGGDYT   78 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHH--HTCSEEEECSCHHHH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhh--hcCcEEEEecCchHH
Confidence            45999999 599999999876654 33   666665543221   1111111111 1232333  689999999999988


Q ss_pred             HHHHhhccccccCCccEEEEcCCC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .++...+..  ...+.+|+|.+|-
T Consensus        79 ~~~~~~~~~--~g~~~~VID~Ss~  100 (146)
T d1t4ba1          79 NEIYPKLRE--SGWQGYWIDAASS  100 (146)
T ss_dssp             HHHHHHHHH--TTCCCEEEECSST
T ss_pred             HHhhHHHHh--cCCCeecccCCcc
Confidence            888877731  2344689999886

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.75  E-value=6.3e-06  Score=68.06  Aligned_cols=93  Identities=12%  Similarity=0.094  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhCC----CceecChhhHhhcCCCEEEEecCchhHHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQLN----APFFADLNDLCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~g----~~~~~~~~~~~~~~aDvVIlavp~~~~~~  103 (335)
                      ...++|.|+|+|..|.+++.+|.+.+.+|++++|+.+..+ .+...+    +.......... .++|+||-|||......
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~-~~~diiIN~tp~g~~~~   94 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPL-QTYDLVINATSAGLSGG   94 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCC-SCCSEEEECCCC-----
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccc-cccceeeeccccccccc
Confidence            3577999999999999999999987789999999986543 223221    11111111122 68999999999886444


Q ss_pred             HHhhccccccCCccEEEEcC
Q 044593          104 VLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~  123 (335)
                      ..... ...++++.+++|+.
T Consensus        95 ~~~~~-~~~~~~~~~~~D~v  113 (171)
T d1p77a1          95 TASVD-AEILKLGSAFYDMQ  113 (171)
T ss_dssp             --CCC-HHHHHHCSCEEESC
T ss_pred             ccchh-hhhhcccceeeeee
Confidence            33222 23456788899975

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.74  E-value=3.9e-05  Score=61.57  Aligned_cols=89  Identities=15%  Similarity=0.196  Sum_probs=56.8

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHc-CC---eEEEEcCCCCcHHHHHhCC----Cce-ecChhhHhhcCCCEEEEecCchhH
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARH-HH---TLLVHSRSDHSPAVRQQLN----APF-FADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~-G~---~V~~~dr~~~~~~~a~~~g----~~~-~~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      |||+||| .|..|.-+.+.|.+. .|   ++..+..+...-+ ....+    ... ..+. +.. .++|+||+|+|....
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk-~~~~~~~~~~~~~~~~~-~~~-~~~DvvF~alp~~~s   77 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP-APNFGKDAGMLHDAFDI-ESL-KQLDAVITCQGGSYT   77 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSB-CCCSSSCCCBCEETTCH-HHH-TTCSEEEECSCHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccc-ccccCCcceeeecccch-hhh-ccccEEEEecCchHH
Confidence            7999999 699999999877653 33   5554443322111 01111    111 1222 333 789999999999998


Q ss_pred             HHHHhhccccccCCccEEEEcCCC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      .++...+..  ...+++|+|.++.
T Consensus        78 ~~~~~~l~~--~g~~~~VIDlSsd   99 (147)
T d1mb4a1          78 EKVYPALRQ--AGWKGYWIDAAST   99 (147)
T ss_dssp             HHHHHHHHH--TTCCSEEEESSST
T ss_pred             HHHhHHHHH--cCCceEEEeCCcc
Confidence            888887631  2344689999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=1.2e-05  Score=65.77  Aligned_cols=94  Identities=16%  Similarity=0.189  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---cChhhH---hhcCCCEEEEecCchhH
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---ADLNDL---CELHPDVVLLSTSILST  101 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~~~~~~---~~~~aDvVIlavp~~~~  101 (335)
                      ...+.+|.|+|+|.+|...+..++..|.+|+++|++++..+.++++|...+   .+..+.   .....|+++.|+.....
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~  104 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD  104 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc
Confidence            345789999999999999999888999999999999999999999987521   111111   11467888888765431


Q ss_pred             HHHHhhccccccCCccEEEEcC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      .. +... ...++++..++.++
T Consensus       105 ~~-~~~~-~~~l~~~G~iv~~G  124 (168)
T d1piwa2         105 ID-FNIM-PKAMKVGGRIVSIS  124 (168)
T ss_dssp             CC-TTTG-GGGEEEEEEEEECC
T ss_pred             ch-HHHH-HHHhhccceEEEec
Confidence            11 1121 13355666666665

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.70  E-value=4.4e-05  Score=62.60  Aligned_cols=68  Identities=12%  Similarity=0.066  Sum_probs=45.2

Q ss_pred             CCCeEEEEcccHHHHHHH--HHHHH-cC---CeEEEEcCCCCcHHH-HH-------hCCC----ceecChhhHhhcCCCE
Q 044593           30 TSLKIAVIGFGNFGQFLA--KAFAR-HH---HTLLVHSRSDHSPAV-RQ-------QLNA----PFFADLNDLCELHPDV   91 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA--~~L~~-~G---~~V~~~dr~~~~~~~-a~-------~~g~----~~~~~~~~~~~~~aDv   91 (335)
                      +..||+|||.|..|...+  ..+.. ..   -+++++|.+++..+. +.       ..+.    ..+++..+.+ +++|+
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal-~~AD~   80 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAF-TDVDF   80 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHH-SSCSE
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhcc-CCCCE
Confidence            467999999998876533  33332 22   389999999875431 11       1122    2456777777 89999


Q ss_pred             EEEecCc
Q 044593           92 VLLSTSI   98 (335)
Q Consensus        92 VIlavp~   98 (335)
                      ||++.-.
T Consensus        81 Vvitag~   87 (167)
T d1u8xx1          81 VMAHIRV   87 (167)
T ss_dssp             EEECCCT
T ss_pred             EEECCCc
Confidence            9999754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.70  E-value=4.5e-05  Score=62.92  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=43.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAP   76 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~   76 (335)
                      ..+.+|.|+|+|.+|...+..++..|. +|+++|++++..+.++++|..
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~   75 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD   75 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccce
Confidence            357899999999999999999999997 799999999998889988874

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.68  E-value=9.9e-05  Score=60.48  Aligned_cols=68  Identities=19%  Similarity=0.159  Sum_probs=44.0

Q ss_pred             CCeEEEEcccHHHH--HHHHHHHHc-C---CeEEEEcCCCCcH--HH--------HHhCCCc----eecChhhHhhcCCC
Q 044593           31 SLKIAVIGFGNFGQ--FLAKAFARH-H---HTLLVHSRSDHSP--AV--------RQQLNAP----FFADLNDLCELHPD   90 (335)
Q Consensus        31 ~~kI~IIG~G~mG~--siA~~L~~~-G---~~V~~~dr~~~~~--~~--------a~~~g~~----~~~~~~~~~~~~aD   90 (335)
                      .|||+|||+|..|.  .++..+... .   -+++.+|++++..  +.        ....+..    .++|..+.+ +++|
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al-~gaD   79 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRAL-DGAD   79 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH-TTCS
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhc-CCCC
Confidence            37999999997764  444444432 1   3899999987542  21        1122332    456666666 8999


Q ss_pred             EEEEecCch
Q 044593           91 VVLLSTSIL   99 (335)
Q Consensus        91 vVIlavp~~   99 (335)
                      +||++....
T Consensus        80 vVv~ta~~~   88 (169)
T d1s6ya1          80 FVTTQFRVG   88 (169)
T ss_dssp             EEEECCCTT
T ss_pred             EEEEccccC
Confidence            999998644

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.65  E-value=2.6e-05  Score=62.54  Aligned_cols=63  Identities=24%  Similarity=0.391  Sum_probs=44.3

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHcCC--eEEEEcCCCCcH--H-HHHhC-------C--Cce----ecChhhHhhcCCCEE
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARHHH--TLLVHSRSDHSP--A-VRQQL-------N--APF----FADLNDLCELHPDVV   92 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~G~--~V~~~dr~~~~~--~-~a~~~-------g--~~~----~~~~~~~~~~~aDvV   92 (335)
                      |||+|||+ |.+|+++|..+...|.  ++.++|+++...  + .+.++       .  ...    ..+.++ + ++||+|
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~-l-~~aDvV   78 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRI-I-DESDVV   78 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGG-G-TTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHH-h-ccceEE
Confidence            79999995 9999999999999885  999999986432  1 12111       1  111    123343 4 799999


Q ss_pred             EEec
Q 044593           93 LLST   96 (335)
Q Consensus        93 Ilav   96 (335)
                      |++.
T Consensus        79 VitA   82 (145)
T d1hyea1          79 IITS   82 (145)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9985

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.64  E-value=0.00012  Score=60.57  Aligned_cols=72  Identities=19%  Similarity=0.241  Sum_probs=44.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC-CeEEEE-cCCCCcH-HHHHhCCCc-----------------eecChhhHhhcCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH-HTLLVH-SRSDHSP-AVRQQLNAP-----------------FFADLNDLCELHPD   90 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G-~~V~~~-dr~~~~~-~~a~~~g~~-----------------~~~~~~~~~~~~aD   90 (335)
                      |-||+|.|+|+||..+++++.+.+ .+|+++ |+++... ..+...+..                 ...+..++. .++|
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~-~~vD   79 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI-KTSD   79 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH-HHCS
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh-hcCC
Confidence            458999999999999999999865 577654 7666533 223333321                 222333333 4567


Q ss_pred             EEEEecCchhHHH
Q 044593           91 VVLLSTSILSTQS  103 (335)
Q Consensus        91 vVIlavp~~~~~~  103 (335)
                      +||-|||.....+
T Consensus        80 iViecTG~f~~~e   92 (178)
T d1b7go1          80 IVVDTTPNGVGAQ   92 (178)
T ss_dssp             EEEECCSTTHHHH
T ss_pred             EEEECCCCcCCHH
Confidence            7777777654433

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=9.4e-05  Score=60.16  Aligned_cols=91  Identities=16%  Similarity=0.189  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---cChhhHh--hcCCCEEEEecCchh-HH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---ADLNDLC--ELHPDVVLLSTSILS-TQ  102 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~~~~~~~--~~~aDvVIlavp~~~-~~  102 (335)
                      ..+.+|.|+|+|.+|...+..++..|.++++.+++++..+.++++|....   .+.....  .+..|++|-|+.... ..
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~  108 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLD  108 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHH
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHH
Confidence            45789999999999999999999999999999999888888899887532   1211111  146899999998654 44


Q ss_pred             HHHhhccccccCCccEEEEcCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ..+..     ++++..++.++.
T Consensus       109 ~~~~~-----l~~~G~iv~~G~  125 (168)
T d1uufa2         109 DFTTL-----LKRDGTMTLVGA  125 (168)
T ss_dssp             HHHTT-----EEEEEEEEECCC
T ss_pred             HHHHH-----HhcCCEEEEecc
Confidence            44443     345566666653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.59  E-value=0.00024  Score=56.44  Aligned_cols=63  Identities=19%  Similarity=0.258  Sum_probs=43.9

Q ss_pred             eEEEEc-ccHHHHHHHHHHHHcCC--eEEEEcCCCCc--HH-HHHhC--------CCc-eecChhhHhhcCCCEEEEecC
Q 044593           33 KIAVIG-FGNFGQFLAKAFARHHH--TLLVHSRSDHS--PA-VRQQL--------NAP-FFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        33 kI~IIG-~G~mG~siA~~L~~~G~--~V~~~dr~~~~--~~-~a~~~--------g~~-~~~~~~~~~~~~aDvVIlavp   97 (335)
                      ||+||| .|.+|+++|..+...+.  ++.++|++...  .+ .+.++        ... ...+.+++  .+||+||++.-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~--~~aDiVvitaG   79 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDT--AGSDVVVITAG   79 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGG--TTCSEEEECCC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHh--hhcCEEEEecc
Confidence            899999 69999999999999986  89999976431  11 12221        111 22344544  79999999753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.58  E-value=1.8e-05  Score=65.34  Aligned_cols=118  Identities=13%  Similarity=0.191  Sum_probs=73.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHH-HHHhC----CCc-----eecChhhHhhcCCCEEEEecC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPA-VRQQL----NAP-----FFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~-~a~~~----g~~-----~~~~~~~~~~~~aDvVIlavp   97 (335)
                      ..++++|.|||+|..+.+++.+|.+.| +|++++|+.+..+ .+...    ...     ...+..... ..+|++|.|||
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dliIn~tp   92 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDL-DGVDIIINATP   92 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCC-TTCCEEEECSC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhcc-chhhhhccCCc
Confidence            457889999999999999999998776 8999999976543 22211    111     123333333 67999999999


Q ss_pred             chhHHHHHh--hccccccCCccEEEEcCC--CCchHHHHHHhhCCCCCceEeccccC
Q 044593           98 ILSTQSVLK--SIPFQRLKRSTLFVDVLS--VKEFPRNLFLKYLPQDFDILCTHPMF  150 (335)
Q Consensus        98 ~~~~~~vl~--~l~~~~l~~~~iVvd~~S--vK~~~~~~l~~~l~~~~~~v~~HPma  150 (335)
                      .......-.  .+....++++.++.|+.=  -.+...+..+   ..+..++.+.+|.
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T~l~~~a~---~~G~~~i~Gl~ML  146 (177)
T d1nvta1          93 IGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLKEAK---KVNAKTINGLGML  146 (177)
T ss_dssp             TTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCHHHHHHH---TTTCEEECTHHHH
T ss_pred             ccccccccccchhhhhccCcccceeeecCCcHhHHHHHHHH---HCCCcccCCHHHH
Confidence            765321111  121234678889999852  2233334333   2355666655554

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.56  E-value=4.2e-05  Score=61.15  Aligned_cols=90  Identities=11%  Similarity=0.146  Sum_probs=58.0

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCC---eEEEEcCCCCcHHHHHhCCCc-eecCh-hhHhhcCCCEEEEecCchhHHHH
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHH---TLLVHSRSDHSPAVRQQLNAP-FFADL-NDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~dr~~~~~~~a~~~g~~-~~~~~-~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      .|||+||| .|..|.-+.+.|.+.+|   ++..+..+...-+.....+-. ...+. .+.. .++|++|+|+|.....++
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~-~~~d~vf~a~p~~~s~~~   80 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDF-SSVGLAFFAAAAEVSRAH   80 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCG-GGCSEEEECSCHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhh-ccceEEEecCCcchhhhh
Confidence            58999999 59999999999986654   565443322211100000100 01111 1223 689999999999888777


Q ss_pred             HhhccccccCCccEEEEcCCC
Q 044593          105 LKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       105 l~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ...+    ...|..|+|.++-
T Consensus        81 ~~~~----~~~g~~VID~Ss~   97 (144)
T d2hjsa1          81 AERA----RAAGCSVIDLSGA   97 (144)
T ss_dssp             HHHH----HHTTCEEEETTCT
T ss_pred             cccc----ccCCceEEeechh
Confidence            7765    3578899999875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.52  E-value=5.1e-05  Score=61.53  Aligned_cols=49  Identities=14%  Similarity=0.180  Sum_probs=43.8

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP   76 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~   76 (335)
                      ...+.+|.|+|+|.+|...+..++..|.+|+++|++++..+.+++.|..
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~   73 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS   73 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc
Confidence            3457899999999999999999999999999999999888888888874

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.52  E-value=7.8e-05  Score=61.28  Aligned_cols=90  Identities=12%  Similarity=0.113  Sum_probs=64.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec-----ChhhHh-h----cCCCEEEEecC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA-----DLNDLC-E----LHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~-----~~~~~~-~----~~aDvVIlavp   97 (335)
                      ..+.+|.|+|+|.+|...+..++..|. +|++.|++++..+.++++|...+-     +..+.+ .    ..+|+||-|+.
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g  105 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGG  105 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccC
Confidence            357799999999999999999999997 799999999888889998874321     122211 0    24889999987


Q ss_pred             chh-HHHHHhhccccccCCccEEEEcC
Q 044593           98 ILS-TQSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus        98 ~~~-~~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      ... +...++-     ++++..++-++
T Consensus       106 ~~~~~~~a~~~-----~~~~G~iv~~G  127 (174)
T d1jqba2         106 GSETLSQAVKM-----VKPGGIISNIN  127 (174)
T ss_dssp             CTTHHHHHHHH-----EEEEEEEEECC
T ss_pred             CHHHHHHHHHH-----HhcCCEEEEEe
Confidence            654 3444443     34556666665

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.51  E-value=0.0001  Score=58.18  Aligned_cols=106  Identities=11%  Similarity=0.079  Sum_probs=76.1

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGF----GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~----G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      .++|+|||+    +..|..+...|.+.|++++.+..++...+   =.|...+.++.++- ...|++++++|+..+.++++
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~---i~g~~~~~~l~~i~-~~iD~v~v~~p~~~v~~~v~   88 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---LFGEEAVASLLDLK-EPVDILDVFRPPSALMDHLP   88 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---ETTEECBSSGGGCC-SCCSEEEECSCHHHHTTTHH
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce---eeceecccchhhcc-CCCceEEEeccHHHHHHHHH
Confidence            458999996    89999999999999999999987653221   13666777888875 67899999999999988888


Q ss_pred             hccccccCCccEEEEcCCCCchHHHHHHhhCCCCCceEe
Q 044593          107 SIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILC  145 (335)
Q Consensus       107 ~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~l~~~~~~v~  145 (335)
                      +...  ...+.+++-.+.......+.+++   .+.++|.
T Consensus        89 ~~~~--~g~k~i~~q~G~~~~e~~~~a~~---~Gi~vV~  122 (136)
T d1iuka_          89 EVLA--LRPGLVWLQSGIRHPEFEKALKE---AGIPVVA  122 (136)
T ss_dssp             HHHH--HCCSCEEECTTCCCHHHHHHHHH---TTCCEEE
T ss_pred             HHHh--hCCCeEEEecCccCHHHHHHHHH---cCCEEEc
Confidence            8742  44556777665443333333322   3556664

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.49  E-value=8e-05  Score=58.33  Aligned_cols=74  Identities=14%  Similarity=0.125  Sum_probs=62.4

Q ss_pred             CCCeEEEEcc----cHHHHHHHHHHHHcC-CeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHH
Q 044593           30 TSLKIAVIGF----GNFGQFLAKAFARHH-HTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSV  104 (335)
Q Consensus        30 ~~~kI~IIG~----G~mG~siA~~L~~~G-~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~v  104 (335)
                      ..++|+|||+    |.+|..+.+.|.+.| ++|+.+.+..+...     |...+.++.++- ...|++++++|...+.++
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~-----G~~~y~sl~dlp-~~vDlvvi~vp~~~~~~~   80 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQ-----GVKAYKSVKDIP-DEIDLAIIVVPKRFVKDT   80 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEET-----TEECBSSTTSCS-SCCSEEEECSCHHHHHHH
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccC-----CeEeecchhhcC-CCCceEEEecChHHhHHH
Confidence            3568999995    999999999998766 68998988765543     777888888886 789999999999999999


Q ss_pred             Hhhcc
Q 044593          105 LKSIP  109 (335)
Q Consensus       105 l~~l~  109 (335)
                      ++++.
T Consensus        81 ~~~~~   85 (129)
T d2csua1          81 LIQCG   85 (129)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99884

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.45  E-value=0.00064  Score=55.66  Aligned_cols=72  Identities=8%  Similarity=0.046  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecC-------hhhHh----hcCCCEEEEec
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFAD-------LNDLC----ELHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~-------~~~~~----~~~aDvVIlav   96 (335)
                      ..+..|.|+|+|.+|...+..++..|. +|+++|+++++.+.++++|...+-+       .....    ...+|++|.++
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~  107 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVI  107 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECS
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeC
Confidence            457789999999999999999999995 8999999999999999988853211       11111    13577777777


Q ss_pred             Cchh
Q 044593           97 SILS  100 (335)
Q Consensus        97 p~~~  100 (335)
                      ....
T Consensus       108 g~~~  111 (176)
T d1d1ta2         108 GHLE  111 (176)
T ss_dssp             CCHH
T ss_pred             CchH
Confidence            6554

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.45  E-value=0.00027  Score=58.24  Aligned_cols=89  Identities=15%  Similarity=0.151  Sum_probs=58.5

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCC-eEEEE-cCCCC--cHHHHHh--CCC--ceecChhhHhhcCCCEEEEecCchhH
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHH-TLLVH-SRSDH--SPAVRQQ--LNA--PFFADLNDLCELHPDVVLLSTSILST  101 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~-dr~~~--~~~~a~~--~g~--~~~~~~~~~~~~~aDvVIlavp~~~~  101 (335)
                      |+||+|+| .|..|.-+.+.|.++-+ ++..+ .++..  .......  .+.  ....+.+++. .++|++++|+|....
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~-~~~dvvf~a~p~~~s   79 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVS-KNCDVLFTALPAGAS   79 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHH-HHCSEEEECCSTTHH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhc-cccceEEEccccHHH
Confidence            57999999 69999999999987643 66444 33322  2221111  111  1223445555 679999999999887


Q ss_pred             HHHHhhccccccCCccEEEEcCCCC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~SvK  126 (335)
                      .+.....      .+..|+|.++--
T Consensus        80 ~~~~~~~------~~~~VIDlSadf   98 (176)
T d1vkna1          80 YDLVREL------KGVKIIDLGADF   98 (176)
T ss_dssp             HHHHTTC------CSCEEEESSSTT
T ss_pred             HHHHHhh------ccceEEecCccc
Confidence            7666532      467899998754

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.39  E-value=0.00025  Score=63.93  Aligned_cols=92  Identities=14%  Similarity=0.096  Sum_probs=68.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHc-CC-eEEEEcCCCCcHH----HHHhCCCceecChhhHhhcCCCEEEEecCchhHH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARH-HH-TLLVHSRSDHSPA----VRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~-G~-~V~~~dr~~~~~~----~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~  102 (335)
                      ....+++|||+|..+.+.+.++... .. +|.+|+|+++..+    .....++....+..+.+ .+||+|+.|||.... 
T Consensus       123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~-~~aDiV~taT~s~~P-  200 (320)
T d1omoa_         123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEA-SRCDVLVTTTPSRKP-  200 (320)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHH-TSSSEEEECCCCSSC-
T ss_pred             CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhh-ccccEEEEeccCccc-
Confidence            3457899999999999999998763 33 8999999986543    33455666666667777 799999999986532 


Q ss_pred             HHHhhccccccCCccEEEEcCCCC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~SvK  126 (335)
                       ++.   ...+++|+.|.-+++-+
T Consensus       201 -~~~---~~~l~~G~hv~~iGs~~  220 (320)
T d1omoa_         201 -VVK---AEWVEEGTHINAIGADG  220 (320)
T ss_dssp             -CBC---GGGCCTTCEEEECSCCS
T ss_pred             -ccc---hhhcCCCCeEeecCCcc
Confidence             222   24578999999998754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.39  E-value=0.00012  Score=59.04  Aligned_cols=90  Identities=14%  Similarity=0.143  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec-----Chhh----HhhcCCCEEEEecCc
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA-----DLND----LCELHPDVVLLSTSI   98 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~-----~~~~----~~~~~aDvVIlavp~   98 (335)
                      ...+.+|.|+|+|.+|...+..++..|.+|++.+++++..+.++++|.....     +..+    .. .+.|.+|+++..
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~  103 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV-GGVHAAVVTAVS  103 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH-SSEEEEEESSCC
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhccccc-CCCceEEeecCC
Confidence            3457899999999999999999999999999999999988889999875321     1111    12 456666676665


Q ss_pred             hh-HHHHHhhccccccCCccEEEEcC
Q 044593           99 LS-TQSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus        99 ~~-~~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      .. +...++     .++++..++.++
T Consensus       104 ~~~~~~a~~-----~l~~~G~i~~~g  124 (168)
T d1rjwa2         104 KPAFQSAYN-----SIRRGGACVLVG  124 (168)
T ss_dssp             HHHHHHHHH-----HEEEEEEEEECC
T ss_pred             HHHHHHHHH-----HhccCCceEecc
Confidence            43 233332     244555666554

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=97.38  E-value=0.00017  Score=62.02  Aligned_cols=82  Identities=15%  Similarity=0.245  Sum_probs=56.7

Q ss_pred             ccCCCCCeEEEEcccHHHHHH----HHHHHHc--CCeEE-EEcCCCCcH-HHHHhCCCc---eecChhhHhh-cCCCEEE
Q 044593           26 YVKSTSLKIAVIGFGNFGQFL----AKAFARH--HHTLL-VHSRSDHSP-AVRQQLNAP---FFADLNDLCE-LHPDVVL   93 (335)
Q Consensus        26 ~~~~~~~kI~IIG~G~mG~si----A~~L~~~--G~~V~-~~dr~~~~~-~~a~~~g~~---~~~~~~~~~~-~~aDvVI   93 (335)
                      .+.++.+||||||+|.+|+.+    ..++.+.  +++|+ ++|++++.. +.+.+.++.   .+.+.++++. .+.|+|+
T Consensus        11 ~~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~   90 (237)
T d2nvwa1          11 VPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIV   90 (237)
T ss_dssp             SGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEE
T ss_pred             CCCCCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceee
Confidence            345677899999999865544    4456553  46765 689988654 445666653   4568888762 4689999


Q ss_pred             EecCchhHHHHHhh
Q 044593           94 LSTSILSTQSVLKS  107 (335)
Q Consensus        94 lavp~~~~~~vl~~  107 (335)
                      +|||.....++...
T Consensus        91 i~tp~~~h~~~~~~  104 (237)
T d2nvwa1          91 VSVKVPEHYEVVKN  104 (237)
T ss_dssp             ECSCHHHHHHHHHH
T ss_pred             ccCCCcchhhHHHH
Confidence            99999876555443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.37  E-value=0.00068  Score=55.35  Aligned_cols=73  Identities=11%  Similarity=0.042  Sum_probs=54.7

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecCh-------hhHh----hcCCCEEEEe
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADL-------NDLC----ELHPDVVLLS   95 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~-------~~~~----~~~aDvVIla   95 (335)
                      ...+.+|.|+|+|.+|...+..++..|. +|++.|++++..+.++++|...+-+.       .+..    ....|++|.|
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~  104 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  104 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence            3457899999999999999999999996 79999999999999999988643211       1111    0246777777


Q ss_pred             cCchh
Q 044593           96 TSILS  100 (335)
Q Consensus        96 vp~~~  100 (335)
                      +....
T Consensus       105 ~g~~~  109 (174)
T d1p0fa2         105 AGRIE  109 (174)
T ss_dssp             SCCHH
T ss_pred             CCCch
Confidence            66554

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.36  E-value=6.5e-05  Score=68.44  Aligned_cols=94  Identities=14%  Similarity=0.120  Sum_probs=68.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHH-cCC-eEEEEcCCCCcH-HHHHh----CCCc--eecChhhHhhcCCCEEEEecCch
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFAR-HHH-TLLVHSRSDHSP-AVRQQ----LNAP--FFADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~-~G~-~V~~~dr~~~~~-~~a~~----~g~~--~~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      ....+++|||+|..+..-+.++.. .+. +|.+|+|+++.. +.+.+    .|+.  ...+.++++ .+||+|+.||+..
T Consensus       126 ~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav-~~ADIi~t~Tas~  204 (340)
T d1x7da_         126 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAV-KGVDIITTVTADK  204 (340)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHH-TTCSEEEECCCCS
T ss_pred             cCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHH-hcCCceeeccccC
Confidence            345789999999999999998866 344 899999998654 33322    3554  366888888 8999999999755


Q ss_pred             hHHHHHhhccccccCCccEEEEcCCCC
Q 044593          100 STQSVLKSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~~iVvd~~SvK  126 (335)
                      ....++..   ..+++|+.|.-+++-+
T Consensus       205 s~~Pv~~~---~~l~pG~hI~aiGs~~  228 (340)
T d1x7da_         205 AYATIITP---DMLEPGMHLNAVGGDC  228 (340)
T ss_dssp             SEEEEECG---GGCCTTCEEEECSCCB
T ss_pred             CCCcccch---hhcCCCCEEeecccch
Confidence            43333332   4578999999888743

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.36  E-value=0.00037  Score=57.16  Aligned_cols=45  Identities=20%  Similarity=0.378  Sum_probs=32.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC-CeEE-EEcCCCCc-HHHHHhCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH-HTLL-VHSRSDHS-PAVRQQLNA   75 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G-~~V~-~~dr~~~~-~~~a~~~g~   75 (335)
                      .+||+|.|+|+||..+.+++.+.. .+|+ +.|.++.. ...+.+.+.
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~   49 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGI   49 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTC
T ss_pred             cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCc
Confidence            569999999999999999998754 5664 45777654 334555544

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.35  E-value=0.00094  Score=54.55  Aligned_cols=74  Identities=15%  Similarity=0.053  Sum_probs=56.2

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecCh-------hhHh----hcCCCEEEEe
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADL-------NDLC----ELHPDVVLLS   95 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~-------~~~~----~~~aDvVIla   95 (335)
                      ...+.+|.|+|+|.+|...+..++..|. .|++.|++++..+.++++|.....+.       ....    ...+|++|-|
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~  105 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  105 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence            3467899999999999999999999997 68899999999999999988532211       1111    1457888888


Q ss_pred             cCchhH
Q 044593           96 TSILST  101 (335)
Q Consensus        96 vp~~~~  101 (335)
                      +.....
T Consensus       106 ~G~~~~  111 (174)
T d1e3ia2         106 AGTAQT  111 (174)
T ss_dssp             SCCHHH
T ss_pred             cccchH
Confidence            876543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.32  E-value=0.00021  Score=58.40  Aligned_cols=92  Identities=14%  Similarity=-0.022  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCcee-----cChhhHh----hcCCCEEEEecC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLC----ELHPDVVLLSTS   97 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~----~~~aDvVIlavp   97 (335)
                      ...+.+|.|+|+|.+|...+..++..|. .|++.|++++..+.++++|....     .+..+.+    ...+|+||-|+.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G  105 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG  105 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence            3467899999999999999999999887 45778999888888888887421     1222211    024788888887


Q ss_pred             chhHHHHHhhccccccCCccEEEEcC
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      .....+..-.+    ++++..++-++
T Consensus       106 ~~~~~~~~~~~----~~~~G~i~~~G  127 (174)
T d1f8fa2         106 SPEILKQGVDA----LGILGKIAVVG  127 (174)
T ss_dssp             CHHHHHHHHHT----EEEEEEEEECC
T ss_pred             cHHHHHHHHhc----ccCceEEEEEe
Confidence            65543332222    33455555543

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.30  E-value=4.3e-05  Score=62.58  Aligned_cols=80  Identities=14%  Similarity=0.145  Sum_probs=50.4

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecCchhHHH
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTSILSTQS  103 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~~~  103 (335)
                      +++..+||+|||+|.||...+..+.+..  ..+.+++....... ....+. ...+.++++. .+.|+|++|||+..-.+
T Consensus         3 ~~~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~e~l~~~~iD~V~I~tp~~~H~~   80 (172)
T d1lc0a1           3 TNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-GSLDEV-RQISLEDALRSQEIDVAYICSESSSHED   80 (172)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-CEETTE-EBCCHHHHHHCSSEEEEEECSCGGGHHH
T ss_pred             CCCCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHH-HHhhcc-CcCCHHHHHhCCCcchhhhccccccccc
Confidence            3566789999999999999998887643  12333332221110 111122 2335666652 46899999999998766


Q ss_pred             HHhhc
Q 044593          104 VLKSI  108 (335)
Q Consensus       104 vl~~l  108 (335)
                      ++...
T Consensus        81 ~~~~a   85 (172)
T d1lc0a1          81 YIRQF   85 (172)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            66554

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=0.00059  Score=53.10  Aligned_cols=85  Identities=21%  Similarity=0.297  Sum_probs=58.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHHcCCeEE-EEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           32 LKIAVIGF-GNFGQFLAKAFARHHHTLL-VHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        32 ~kI~IIG~-G~mG~siA~~L~~~G~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      |||+|+|+ |.||+.++..+.+.|+++. .+|++..                .+ . .++|+||=-+.++.+.+.++...
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~----------------~~-~-~~~DVvIDFS~p~~~~~~l~~~~   62 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV----------------EE-L-DSPDVVIDFSSPEALPKTVDLCK   62 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE----------------EE-C-SCCSEEEECSCGGGHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH----------------HH-h-ccCCEEEEecCHHHHHHHHHHHH
Confidence            79999995 9999999999999999875 4454321                22 3 67999998888888888877653


Q ss_pred             ccccCCccEEEEcCCCCchHHHHHHhhC
Q 044593          110 FQRLKRSTLFVDVLSVKEFPRNLFLKYL  137 (335)
Q Consensus       110 ~~~l~~~~iVvd~~SvK~~~~~~l~~~l  137 (335)
                      . +  +-.+|+=+++-.....+.+++..
T Consensus        63 ~-~--~~p~ViGTTG~~~~~~~~i~~~a   87 (128)
T d1vm6a3          63 K-Y--RAGLVLGTTALKEEHLQMLRELS   87 (128)
T ss_dssp             H-H--TCEEEECCCSCCHHHHHHHHHHT
T ss_pred             h-c--CCCEEEEcCCCCHHHHHHHHHHH
Confidence            1 1  22355545544444456666543

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.25  E-value=0.00023  Score=57.25  Aligned_cols=67  Identities=13%  Similarity=0.048  Sum_probs=44.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCCCcHH-HHH-----hCC------CceecChhhHhhcCC
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSDHSPA-VRQ-----QLN------APFFADLNDLCELHP   89 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~~~~~-~a~-----~~g------~~~~~~~~~~~~~~a   89 (335)
                      +.+||+|||+ |.+|++++..|...+.       ++..+|.++...+ ...     ...      +....+..+.+ +++
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   80 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAF-KDL   80 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHT-TTC
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCccccccc-CCc
Confidence            5689999995 9999999999986542       4677887754221 111     111      12334555666 899


Q ss_pred             CEEEEecC
Q 044593           90 DVVLLSTS   97 (335)
Q Consensus        90 DvVIlavp   97 (335)
                      |+||++..
T Consensus        81 dvVVitag   88 (154)
T d5mdha1          81 DVAILVGS   88 (154)
T ss_dssp             SEEEECCS
T ss_pred             eEEEEecc
Confidence            99999763

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00058  Score=54.31  Aligned_cols=93  Identities=11%  Similarity=0.008  Sum_probs=60.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcH----HHHHhCCCcee----cChh---hHhhcCCCEEEEecCch
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSP----AVRQQLNAPFF----ADLN---DLCELHPDVVLLSTSIL   99 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~----~~a~~~g~~~~----~~~~---~~~~~~aDvVIlavp~~   99 (335)
                      ...|.|+|+|.+|..++..|.+.|++|+++|.+++..    +.....|+.+.    ++.+   .+-..+||.+|++++.+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d   82 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccH
Confidence            4579999999999999999999999999999988542    22334566421    2322   22126899999999987


Q ss_pred             hHHHHHhhccccccCCc-cEEEEcCC
Q 044593          100 STQSVLKSIPFQRLKRS-TLFVDVLS  124 (335)
Q Consensus       100 ~~~~vl~~l~~~~l~~~-~iVvd~~S  124 (335)
                      ...-.+.... ..+.+. .+|+-+.+
T Consensus        83 ~~n~~~~~~~-r~~~~~~~iia~~~~  107 (153)
T d1id1a_          83 ADNAFVVLSA-KDMSSDVKTVLAVSD  107 (153)
T ss_dssp             HHHHHHHHHH-HHHTSSSCEEEECSS
T ss_pred             HHHHHHHHHH-HHhCCCCceEEEEcC
Confidence            6433222221 123333 46655543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.16  E-value=0.00031  Score=60.26  Aligned_cols=71  Identities=17%  Similarity=0.170  Sum_probs=53.6

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH-hCCCceecChhhHhhcCCCEEEEecCchh
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ-QLNAPFFADLNDLCELHPDVVLLSTSILS  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~-~~g~~~~~~~~~~~~~~aDvVIlavp~~~  100 (335)
                      ..+++|+|-|+|++|+.+|+.|.+.|.+|++.|.++...+.+. ..|.... +.+++...+||+++-|--...
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~~~~  108 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGAV  108 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEecccccccc
Confidence            5688999999999999999999999999999999876654333 3455433 344443368999998855443

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.13  E-value=0.00048  Score=56.59  Aligned_cols=91  Identities=21%  Similarity=0.284  Sum_probs=59.2

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHc-CCeEEE-EcCC--C---CcHHHHHh--CCC---c--eecChhhHhhcCCCEEEEe
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARH-HHTLLV-HSRS--D---HSPAVRQQ--LNA---P--FFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~-G~~V~~-~dr~--~---~~~~~a~~--~g~---~--~~~~~~~~~~~~aDvVIla   95 (335)
                      |+||+||| .|..|.-+.+.|.++ .+++.. +.++  .   +.......  .+.   .  ...+..... .++|++|+|
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dvvf~a   79 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFS-ADVDVVFLA   79 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTC-TTCCEEEEC
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhh-cccceeecc
Confidence            68999999 699999999999987 456643 3221  1   12211111  111   1  122333333 679999999


Q ss_pred             cCchhHHHHHhhccccccCCccEEEEcCCCC
Q 044593           96 TSILSTQSVLKSIPFQRLKRSTLFVDVLSVK  126 (335)
Q Consensus        96 vp~~~~~~vl~~l~~~~l~~~~iVvd~~SvK  126 (335)
                      +|.....+....+    ...+..|+|.++-.
T Consensus        80 lp~~~s~~~~~~~----~~~~~~vIDlSadf  106 (179)
T d2g17a1          80 TAHEVSHDLAPQF----LQAGCVVFDLSGAF  106 (179)
T ss_dssp             SCHHHHHHHHHHH----HHTTCEEEECSSTT
T ss_pred             ccchhHHHHhhhh----hhcCceeecccccc
Confidence            9998877777665    34788999998653

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=97.12  E-value=0.00084  Score=54.86  Aligned_cols=73  Identities=15%  Similarity=0.182  Sum_probs=45.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC-CeEEE-EcCCCCc-HHHHHhCCCce------------------ecChhhHhhcCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH-HTLLV-HSRSDHS-PAVRQQLNAPF------------------FADLNDLCELHP   89 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G-~~V~~-~dr~~~~-~~~a~~~g~~~------------------~~~~~~~~~~~a   89 (335)
                      |.||||-|+|+||..+.+++...+ .+|+. -|+++.. ...+...+...                  ..+..++. .++
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~-~~v   79 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML-DEA   79 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH-HTC
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhh-cCC
Confidence            568999999999999999998776 46654 4666643 23444444321                  11222333 467


Q ss_pred             CEEEEecCchhHHHH
Q 044593           90 DVVLLSTSILSTQSV  104 (335)
Q Consensus        90 DvVIlavp~~~~~~v  104 (335)
                      |+||-|||.....+-
T Consensus        80 DvViEcTG~f~~~~~   94 (171)
T d1cf2o1          80 DIVIDCTPEGIGAKN   94 (171)
T ss_dssp             SEEEECCSTTHHHHH
T ss_pred             CEEEEccCCCCCHHH
Confidence            777777776554433

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.07  E-value=0.00032  Score=59.36  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=32.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      ..+||.|||.|.+|.+.|..|+++|++|+++|++.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45699999999999999999999999999999874

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00092  Score=54.22  Aligned_cols=76  Identities=20%  Similarity=0.220  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.|||- ..+|.-++..|.+.|..|+.++.....              +.+.. .++|+||.|+.....      
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~--------------l~~~~-~~ADivI~a~G~p~~------   93 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKN--------------LRHHV-ENADLLIVAVGKPGF------   93 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSC--------------HHHHH-HHCSEEEECSCCTTC------
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhccccccccccch--------------hHHHH-hhhhHhhhhccCccc------
Confidence            46799999995 669999999999999999998765432              33445 689999999975532      


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                      +....+++|++|+|++..
T Consensus        94 i~~~~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          94 IPGDWIKEGAIVIDVGIN  111 (166)
T ss_dssp             BCTTTSCTTCEEEECCCE
T ss_pred             ccccccCCCcEEEecCce
Confidence            223568999999999754

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00053  Score=55.59  Aligned_cols=103  Identities=16%  Similarity=0.091  Sum_probs=66.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHc-CCeE-EEEcCCCCcH---H-----HHHhCCCceecChhhHhhcCCCEEEEecCc
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARH-HHTL-LVHSRSDHSP---A-----VRQQLNAPFFADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~-G~~V-~~~dr~~~~~---~-----~a~~~g~~~~~~~~~~~~~~aDvVIlavp~   98 (335)
                      +.+||+|+|+ |.||+.+++.+.+. ++++ .++|+.....   +     .....++....+++++. ..+|+||=-+.+
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~-~~~DViIDFs~p   81 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVK-DDFDVFIDFTRP   81 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTT-TSCSEEEECSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHh-cccceEEEeccH
Confidence            5689999995 99999999988875 5676 4567654221   1     01123445666777776 789999999998


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCCCCchHHHHHHhh
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKY  136 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~SvK~~~~~~l~~~  136 (335)
                      ..+.+.++....  . .-.+|+=+++-.....+.+++.
T Consensus        82 ~~~~~~~~~a~~--~-~~~~ViGTTG~~~~~~~~i~~~  116 (162)
T d1diha1          82 EGTLNHLAFCRQ--H-GKGMVIGTTGFDEAGKQAIRDA  116 (162)
T ss_dssp             HHHHHHHHHHHH--T-TCEEEECCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--c-cceeEEecCCCcHHHHHHHHHH
Confidence            888887776521  1 2235554554444444555554

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.93  E-value=0.0014  Score=53.19  Aligned_cols=89  Identities=17%  Similarity=0.061  Sum_probs=62.7

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHh-----hcCCCEEEEecCchhHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLC-----ELHPDVVLLSTSILSTQ  102 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~-----~~~aDvVIlavp~~~~~  102 (335)
                      ....+|.|.| .|.+|......++..|.+|++.+++++..+.++++|....-+..+..     ...+|+||-|+.. .+.
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~-~~~  104 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK-EVE  104 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT-THH
T ss_pred             CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccch-hHH
Confidence            4678999999 49999999999999999999999998888889999885432222211     1468888887763 344


Q ss_pred             HHHhhccccccCCccEEEEcC
Q 044593          103 SVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus       103 ~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      ..++.     ++++..++.++
T Consensus       105 ~~~~~-----l~~~G~~v~~G  120 (171)
T d1iz0a2         105 ESLGL-----LAHGGRLVYIG  120 (171)
T ss_dssp             HHHTT-----EEEEEEEEEC-
T ss_pred             HHHHH-----HhcCCcEEEEe
Confidence            44433     44556666665

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0014  Score=53.42  Aligned_cols=76  Identities=11%  Similarity=0.094  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhh
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKS  107 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~  107 (335)
                      ..+++|.|||- ..+|.-+|..|.+.|..|+.++......              .+.. .++|++|.|+.....   +  
T Consensus        37 l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l--------------~~~~-~~aDivi~a~G~~~~---i--   96 (170)
T d1a4ia1          37 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHL--------------DEEV-NKGDILVVATGQPEM---V--   96 (170)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSH--------------HHHH-TTCSEEEECCCCTTC---B--
T ss_pred             cccceEEEEecCCccchHHHHHHHhccCceEEEecccccH--------------HHHH-hhccchhhccccccc---c--
Confidence            46789999995 6799999999999999999998765433              3345 789999999986543   2  


Q ss_pred             ccccccCCccEEEEcCCC
Q 044593          108 IPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       108 l~~~~l~~~~iVvd~~Sv  125 (335)
                       ....+++|.+|+|++..
T Consensus        97 -~~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          97 -KGEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             -CGGGSCTTCEEEECCCB
T ss_pred             -ccccccCCCeEeccCcc
Confidence             23568999999999754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.92  E-value=0.0048  Score=49.64  Aligned_cols=73  Identities=12%  Similarity=0.091  Sum_probs=53.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecCh-------hhHh----hcCCCEEEEec
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADL-------NDLC----ELHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~-------~~~~----~~~aDvVIlav   96 (335)
                      ....+|.|+|+|.+|.+.+..++..|. +|++.|++++..+.++++|....-+.       .+..    ...+|++|-++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~  106 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECV  106 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECS
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeec
Confidence            456889999999999999999998875 79999999999999999987532111       1111    02467777777


Q ss_pred             CchhH
Q 044593           97 SILST  101 (335)
Q Consensus        97 p~~~~  101 (335)
                      ....+
T Consensus       107 G~~~~  111 (175)
T d1cdoa2         107 GNVGV  111 (175)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            65544

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.88  E-value=0.0015  Score=50.32  Aligned_cols=89  Identities=10%  Similarity=0.092  Sum_probs=59.7

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee----cChhhHh---hcCCCEEEEecCchhHHHHH
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF----ADLNDLC---ELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~----~~~~~~~---~~~aDvVIlavp~~~~~~vl  105 (335)
                      .|.|+|+|.+|..+++.|+  |++|.++|.+++..+.....|+...    ++.+.+.   ..+|+.+|++++.+...-.+
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~   79 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHC   79 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHH
Confidence            5889999999999999995  5578889999988877777887532    2222221   26899999999987643333


Q ss_pred             hhccccccCCc-cEEEEcCC
Q 044593          106 KSIPFQRLKRS-TLFVDVLS  124 (335)
Q Consensus       106 ~~l~~~~l~~~-~iVvd~~S  124 (335)
                      -... ..+.|. .+++-+.+
T Consensus        80 ~~~~-r~~~~~~~iia~~~~   98 (129)
T d2fy8a1          80 ILGI-RKIDESVRIIAEAER   98 (129)
T ss_dssp             HHHH-HHHCSSSCEEEECSS
T ss_pred             HHHH-HHHCCCceEEEEEcC
Confidence            2221 123343 45555543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.87  E-value=0.0059  Score=49.23  Aligned_cols=73  Identities=14%  Similarity=0.102  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecCh-------hhHh----hcCCCEEEEec
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFADL-------NDLC----ELHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~~-------~~~~----~~~aDvVIlav   96 (335)
                      ..+.+|.|+|+|-+|.+.+..++..|. +|++.|++++..+.+++.|....-+.       .+..    ...+|++|-++
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~  106 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVI  106 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecC
Confidence            457899999999999999999999985 89999999999998999887532111       1111    02567777777


Q ss_pred             CchhH
Q 044593           97 SILST  101 (335)
Q Consensus        97 p~~~~  101 (335)
                      .....
T Consensus       107 G~~~~  111 (176)
T d2jhfa2         107 GRLDT  111 (176)
T ss_dssp             CCHHH
T ss_pred             CchhH
Confidence            65543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.84  E-value=0.0035  Score=50.47  Aligned_cols=75  Identities=11%  Similarity=0.078  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceecC-------hhhHh----hcCCCEEEEec
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFAD-------LNDLC----ELHPDVVLLST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~~-------~~~~~----~~~aDvVIlav   96 (335)
                      ..+.+|.|+|+|.+|...+..++..|. .|++.|++++..+.++++|....-+       ..+..    ...+|+||-++
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~  106 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECI  106 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecC
Confidence            457799999999999999999999996 6788899998898899988753211       11111    13567777777


Q ss_pred             CchhHHH
Q 044593           97 SILSTQS  103 (335)
Q Consensus        97 p~~~~~~  103 (335)
                      ......+
T Consensus       107 G~~~~~~  113 (176)
T d2fzwa2         107 GNVKVMR  113 (176)
T ss_dssp             CCHHHHH
T ss_pred             CCHHHHH
Confidence            6555433

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.83  E-value=0.00065  Score=57.89  Aligned_cols=36  Identities=28%  Similarity=0.155  Sum_probs=33.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ..+||.|||.|.-|.+.|..|+++|++|+++|+++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            568999999999999999999999999999998764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00092  Score=55.01  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=36.2

Q ss_pred             ccCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           26 YVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        26 ~~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .+..+.+||+|||.|..|-+.|..|+++||+|++|++++.
T Consensus        38 ~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          38 LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             CSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            3456778999999999999999999999999999999875

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.00052  Score=55.02  Aligned_cols=66  Identities=20%  Similarity=0.117  Sum_probs=41.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCC-------eEEEEcCCCCc--HH-HHHh--C-------CCceecChhhHhhcCC
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHH-------TLLVHSRSDHS--PA-VRQQ--L-------NAPFFADLNDLCELHP   89 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~-------~V~~~dr~~~~--~~-~a~~--~-------g~~~~~~~~~~~~~~a   89 (335)
                      +.|||+|||+ |.+|+.++..|...+.       ...+++.+...  .+ .+.+  .       ++....+..+.+ +++
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a   81 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAF-KDA   81 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT-TTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhc-ccc
Confidence            4679999996 9999999999988653       23444444322  21 1111  1       112334455556 899


Q ss_pred             CEEEEec
Q 044593           90 DVVLLST   96 (335)
Q Consensus        90 DvVIlav   96 (335)
                      |+||++.
T Consensus        82 dvViita   88 (154)
T d1y7ta1          82 DYALLVG   88 (154)
T ss_dssp             SEEEECC
T ss_pred             cEEEeec
Confidence            9999976

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.80  E-value=0.0007  Score=56.02  Aligned_cols=41  Identities=17%  Similarity=0.155  Sum_probs=36.2

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      ..++++|.|.| .|.||..+|+.|.+.|++|++++|+++..+
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~   61 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQ   61 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHH
Confidence            34678999999 699999999999999999999999986553

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00089  Score=50.70  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=33.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ...||||+|.|..|..++.+..+.|+++.++|++++.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            4569999999999999999999999999999998764

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.76  E-value=0.0046  Score=48.04  Aligned_cols=91  Identities=14%  Similarity=0.210  Sum_probs=64.6

Q ss_pred             CCCCeEEEEcc----------cHHHHHHHHHHHHcCCeEEEEcCCCC-------cHHHHH----hCCCceecChhhHhhc
Q 044593           29 STSLKIAVIGF----------GNFGQFLAKAFARHHHTLLVHSRSDH-------SPAVRQ----QLNAPFFADLNDLCEL   87 (335)
Q Consensus        29 ~~~~kI~IIG~----------G~mG~siA~~L~~~G~~V~~~dr~~~-------~~~~a~----~~g~~~~~~~~~~~~~   87 (335)
                      ....||+|+|+          +.-.-.++..|.+.|++|.+||+.-.       ..+...    ..+.....++.+++ .
T Consensus        11 ~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i-~   89 (136)
T d1mv8a3          11 HDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVV-A   89 (136)
T ss_dssp             SSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHH-H
T ss_pred             cCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhh-h
Confidence            45679999996          33467789999999999999997311       111111    11234556788887 7


Q ss_pred             CCCEEEEecCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           88 HPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        88 ~aDvVIlavp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ++|+||++|+-....++...     +.++.+|+|+-++
T Consensus        90 ~~D~ivi~t~h~~f~~l~~~-----~~~~~~I~D~~~~  122 (136)
T d1mv8a3          90 SSDVLVLGNGDELFVDLVNK-----TPSGKKLVDLVGF  122 (136)
T ss_dssp             HCSEEEECSCCGGGHHHHHS-----CCTTCEEEESSSC
T ss_pred             hceEEEEEeCCHHHHHHHHH-----hcCCCEEEECCCC
Confidence            99999999998887665443     3467899998765

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.75  E-value=0.00089  Score=60.32  Aligned_cols=42  Identities=24%  Similarity=0.392  Sum_probs=36.0

Q ss_pred             hcccCCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           24 TQYVKSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        24 ~~~~~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .|+=+++.|||.|.| .|.||+.++..|.++|++|+++|+...
T Consensus         8 ~~~~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1           8 EQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             CCSCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cCcCCCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            344456789999998 799999999999999999999987653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.74  E-value=0.0015  Score=52.76  Aligned_cols=71  Identities=13%  Similarity=0.201  Sum_probs=51.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCcee----cCh-hhHh----hcCCCEEEEecCch
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFF----ADL-NDLC----ELHPDVVLLSTSIL   99 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~----~~~-~~~~----~~~aDvVIlavp~~   99 (335)
                      .+.+|.|+|+|.+|...+..++..|. .|++.|++++..+.+++.|....    .+. ++..    ...+|+||-|+...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            46789999999999999998888885 77889999988888888876421    111 1111    02477888877765


Q ss_pred             h
Q 044593          100 S  100 (335)
Q Consensus       100 ~  100 (335)
                      .
T Consensus       112 ~  112 (172)
T d1h2ba2         112 A  112 (172)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.70  E-value=0.00064  Score=57.99  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=32.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      |+|+|||.|.-|.+.|..|+++|++|+++++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            7899999999999999999999999999998754

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.68  E-value=0.0026  Score=52.29  Aligned_cols=91  Identities=22%  Similarity=0.252  Sum_probs=55.7

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcC-CeEEEE-cCCCC--cHHHHHh-C-CC--ce-ecChhhHhhcCCCEEEEecCc
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHH-HTLLVH-SRSDH--SPAVRQQ-L-NA--PF-FADLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G-~~V~~~-dr~~~--~~~~a~~-~-g~--~~-~~~~~~~~~~~aDvVIlavp~   98 (335)
                      ++..||+||| .|..|+-+.+.|.++- +++... .++..  ....... . +.  .. ....++.. .++|++|+|+|.
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dvvf~alp~   81 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADF-SNVDAVFCCLPH   81 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCG-GGCSEEEECCSS
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhh-cccceeeecccc
Confidence            4678999999 6999999999999864 366444 33322  2221111 1 11  11 11122233 689999999999


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ....++...+.    ..+ .++|.++.
T Consensus        82 ~~s~~~~~~l~----~~~-~~v~~~~~  103 (183)
T d2cvoa1          82 GTTQEIIKGLP----QEL-KIVDLSAD  103 (183)
T ss_dssp             SHHHHHHHTSC----SSC-EEEECSST
T ss_pred             chHHHHHHHHH----hcC-cccccchh
Confidence            98888887663    233 45555443

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.67  E-value=0.00026  Score=54.97  Aligned_cols=77  Identities=14%  Similarity=0.116  Sum_probs=52.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHH-cCCeEEEE-cCCCCcHHHHHhCCCcee--cChhhHhhcCCCEEEEecCchhHHHHHh
Q 044593           31 SLKIAVIGFGNFGQFLAKAFAR-HHHTLLVH-SRSDHSPAVRQQLNAPFF--ADLNDLCELHPDVVLLSTSILSTQSVLK  106 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~-~G~~V~~~-dr~~~~~~~a~~~g~~~~--~~~~~~~~~~aDvVIlavp~~~~~~vl~  106 (335)
                      ..+|.|+|+|.+|..++..+.. .|++++++ |-+++... ..=.|+.+.  .++.++..+..+++++|+|.....+++.
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G-~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~~~~~~~I~d   81 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG-RPVRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAAD   81 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT-CEETTEEEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHH
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC-CEECCEEEecHHHHHHHHhhcccEEEEeCCHHHHHHHHH
Confidence            3489999999999999988753 46787654 77765432 111244432  3334443356889999999888777777


Q ss_pred             hc
Q 044593          107 SI  108 (335)
Q Consensus       107 ~l  108 (335)
                      .+
T Consensus        82 ~l   83 (126)
T d2dt5a2          82 LL   83 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            66

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0009  Score=47.34  Aligned_cols=36  Identities=17%  Similarity=0.216  Sum_probs=32.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      +++|+|+|.|..|..++.+-.+-|+++.++|.+++.
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            468999999999999999999999999999988654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.64  E-value=0.001  Score=57.80  Aligned_cols=38  Identities=24%  Similarity=0.293  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ....+||+|||.|..|.+.|..|+++|++|+++++++.
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            34567999999999999999999999999999998764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0032  Score=50.82  Aligned_cols=90  Identities=14%  Similarity=0.070  Sum_probs=62.2

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee-----cChhhHh-----hcCCCEEEEecC
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF-----ADLNDLC-----ELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~-----~~~~~~~-----~~~aDvVIlavp   97 (335)
                      ..+.+|.|+|+ |.+|......++..|++|++.+++++..+.+++.|....     .+..+.+     ....|+|+-|+.
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g  106 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA  106 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH
T ss_pred             CCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc
Confidence            35779999995 999999999999999999999888877888888887521     1222211     134788888776


Q ss_pred             chhHHHHHhhccccccCCccEEEEcC
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVL  123 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~  123 (335)
                      .......++-     ++++..++.++
T Consensus       107 ~~~~~~~~~~-----l~~~G~iv~~G  127 (174)
T d1yb5a2         107 NVNLSKDLSL-----LSHGGRVIVVG  127 (174)
T ss_dssp             HHHHHHHHHH-----EEEEEEEEECC
T ss_pred             HHHHHHHHhc-----cCCCCEEEEEe
Confidence            5444444433     44555666665

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.59  E-value=0.001  Score=53.21  Aligned_cols=89  Identities=15%  Similarity=0.138  Sum_probs=55.9

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCC---eEEEEcCCCCcHHHHHhCC--CceecChhhHhhcCCCEEEEecCchhHHHHH
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHH---TLLVHSRSDHSPAVRQQLN--APFFADLNDLCELHPDVVLLSTSILSTQSVL  105 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~---~V~~~dr~~~~~~~a~~~g--~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl  105 (335)
                      -||+||| .|..|.-+.+.|.++.+   ++..+..+...-+......  .......+... .++|++++|+|.....+..
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~-~~~d~~f~~~~~~~s~~~~   80 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAF-EGVDIALFSAGSSTSAKYA   80 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTT-TTCSEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhh-hhhhhhhhccCccchhhHH
Confidence            4899999 59999999999988764   3444432211111000000  01111222233 6899999999988877766


Q ss_pred             hhccccccCCccEEEEcCCC
Q 044593          106 KSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       106 ~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ...    ...+..|+|.++-
T Consensus        81 ~~~----~~~~~~VIDlSsd   96 (154)
T d2gz1a1          81 PYA----VKAGVVVVDNTSY   96 (154)
T ss_dssp             HHH----HHTTCEEEECSST
T ss_pred             hhh----ccccceehhcChh
Confidence            654    3578999999875

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.55  E-value=0.00091  Score=54.51  Aligned_cols=37  Identities=24%  Similarity=0.237  Sum_probs=33.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCc
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~   66 (335)
                      ..+||+|||.|..|.+.|..|++.|+ +|+++++++..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            36799999999999999999999998 59999998754

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.45  E-value=0.0047  Score=50.36  Aligned_cols=66  Identities=20%  Similarity=0.142  Sum_probs=44.5

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcC---C----eEEEEcCCCCcH--H-HHHh---C------CCceecChhhHhhcCC
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHH---H----TLLVHSRSDHSP--A-VRQQ---L------NAPFFADLNDLCELHP   89 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G---~----~V~~~dr~~~~~--~-~a~~---~------g~~~~~~~~~~~~~~a   89 (335)
                      +..||.|+|+ |.+|.+++..|+...   .    ++..+|.+....  + .+.+   .      .+...++..+.+ +++
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~-~~a  101 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVF-EDV  101 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT-TTC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhc-cCC
Confidence            4568999995 999999999998753   2    566777766422  1 1111   1      112355666666 899


Q ss_pred             CEEEEec
Q 044593           90 DVVLLST   96 (335)
Q Consensus        90 DvVIlav   96 (335)
                      |+||++.
T Consensus       102 DvVvi~a  108 (175)
T d7mdha1         102 DWALLIG  108 (175)
T ss_dssp             SEEEECC
T ss_pred             ceEEEee
Confidence            9999976

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.41  E-value=0.0019  Score=52.01  Aligned_cols=48  Identities=13%  Similarity=0.205  Sum_probs=41.0

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCc
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAP   76 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~   76 (335)
                      ....+|.|+|+ |.+|...+..++..|. +|++++++++..+.+++.|..
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~   75 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD   75 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc
Confidence            45678999995 9999999999998885 899999999888888887763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.35  E-value=0.0023  Score=53.16  Aligned_cols=69  Identities=16%  Similarity=0.093  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHhCCCceec-----Chhh----Hh-hcCCCEEEEecC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQLNAPFFA-----DLND----LC-ELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~~g~~~~~-----~~~~----~~-~~~aDvVIlavp   97 (335)
                      ..+.+|.|+|+|.+|...+..++..|. +|++.|++++..+.+++.|.....     +..+    +. ...+|++|-|+.
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG  103 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  103 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence            457899999999999888888888786 789999999889989998875321     1111    11 025788888875

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.35  E-value=0.0017  Score=57.91  Aligned_cols=36  Identities=28%  Similarity=0.492  Sum_probs=33.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      +.+||+|||+|.-|.+.|..|+++|++|+++++++.
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            368999999999999999999999999999998875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.32  E-value=0.0018  Score=54.90  Aligned_cols=35  Identities=26%  Similarity=0.274  Sum_probs=32.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .+||+|||.|.-|.+.|..|+++|++|+++++++.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            37999999999999999999999999999998753

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.24  E-value=0.0026  Score=55.02  Aligned_cols=69  Identities=22%  Similarity=0.218  Sum_probs=47.9

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH--H------HHHhCCCcee----cCh---hhHhhcCCCEEE
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP--A------VRQQLNAPFF----ADL---NDLCELHPDVVL   93 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~--~------~a~~~g~~~~----~~~---~~~~~~~aDvVI   93 (335)
                      +.+||.|+| .|.+|+.++..|.+.||+|++.+|++...  .      .....++...    .+.   .... .+++.++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~-~~~~~~~   80 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDAL-KQVDVVI   80 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHH-TTCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhc-cCcchhh
Confidence            467899999 69999999999999999999999976421  1      1123344321    222   2334 6788888


Q ss_pred             EecCch
Q 044593           94 LSTSIL   99 (335)
Q Consensus        94 lavp~~   99 (335)
                      .+.+..
T Consensus        81 ~~~~~~   86 (312)
T d1qyda_          81 SALAGG   86 (312)
T ss_dssp             ECCCCS
T ss_pred             hhhhhc
Confidence            877643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.18  E-value=0.0021  Score=55.11  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      .|.|||.|.+|.+.|..|+++|++|+++|+++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            39999999999999999999999999999975

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0033  Score=53.96  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=33.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .+..||.|||.|.-|-+-|..|+++|++|++++.++.
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            4667899999999999999999999999999987753

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.14  E-value=0.0023  Score=54.81  Aligned_cols=60  Identities=18%  Similarity=0.317  Sum_probs=42.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecCc
Q 044593           31 SLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTSI   98 (335)
Q Consensus        31 ~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~   98 (335)
                      .|||.|.|. |.+|+.++..|.+.|++|++.||++-.        +....+..+++. .++|+||-|.-.
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D--------~~d~~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD--------ITNVLAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC--------TTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhcc--------CCCHHHHHHHHHHcCCCEEEeeccc
Confidence            389999995 999999999999999999999987521        111111223331 367999877543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0031  Score=49.77  Aligned_cols=35  Identities=20%  Similarity=0.149  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRS   63 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~   63 (335)
                      .++++|.|||.|.+|..-++.|.+.|.+|+++++.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999999999999999999999999999654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.11  E-value=0.0044  Score=46.67  Aligned_cols=36  Identities=22%  Similarity=0.304  Sum_probs=33.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ..++|.|||.|.+|.-+|..|.+.|.+|+++++.+.
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            457999999999999999999999999999988765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.06  E-value=0.0029  Score=52.11  Aligned_cols=34  Identities=29%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~   65 (335)
                      +||.|||.|.-|.+.|..|+++|+ +|+++++++.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            489999999999999999999996 7999998764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0044  Score=46.78  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=32.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .+||.|||.|.+|.-+|..|++.|++|+++++.+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            47899999999999999999999999999998764

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.02  E-value=0.054  Score=41.85  Aligned_cols=84  Identities=18%  Similarity=0.118  Sum_probs=54.1

Q ss_pred             eEEEEc-ccHHHHHHHHHHHHc-CCeE-EEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhcc
Q 044593           33 KIAVIG-FGNFGQFLAKAFARH-HHTL-LVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIP  109 (335)
Q Consensus        33 kI~IIG-~G~mG~siA~~L~~~-G~~V-~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l~  109 (335)
                      ||+|+| .|.||..++..+.+. ++++ .++|+....               ......++|+||=.+.+..+.+.++...
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~---------------~~~~~~~~DvvIDFS~p~~~~~~~~~~~   65 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL---------------SLLTDGNTEVVIDFTHPDVVMGNLEFLI   65 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT---------------HHHHTTTCSEEEECCCTTTHHHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch---------------hhhccccCCEEEEcccHHHHHHHHHHHH
Confidence            799999 599999999987764 5776 456764321               1111157999999888888888777653


Q ss_pred             ccccCCcc-EEEEcCCCCchHHHHHHh
Q 044593          110 FQRLKRST-LFVDVLSVKEFPRNLFLK  135 (335)
Q Consensus       110 ~~~l~~~~-iVvd~~SvK~~~~~~l~~  135 (335)
                          +.+. +|+=+++-...-.+.+++
T Consensus        66 ----~~~~~~ViGTTG~~~~~~~~l~~   88 (135)
T d1yl7a1          66 ----DNGIHAVVGTTGFTAERFQQVES   88 (135)
T ss_dssp             ----HTTCEEEECCCCCCHHHHHHHHH
T ss_pred             ----hcCCCEEEeccccchhHHHHHHH
Confidence                2333 444444433333455555

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0035  Score=55.81  Aligned_cols=32  Identities=16%  Similarity=0.385  Sum_probs=30.0

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRS   63 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~   63 (335)
                      |||.|+| .|-+|+.+++.|.+.|++|+++|+.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            8999999 7999999999999999999999874

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.98  E-value=0.0095  Score=48.03  Aligned_cols=90  Identities=16%  Similarity=0.147  Sum_probs=61.9

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCcee---c--ChhhHh-----hcCCCEEEEecCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFF---A--DLNDLC-----ELHPDVVLLSTSI   98 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~---~--~~~~~~-----~~~aDvVIlavp~   98 (335)
                      .+.+|.|+| .|.+|...+..++..|++|++.+++++..+.+++.|....   .  +..+.+     ...+|+|+-|+..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~  104 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG  104 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc
Confidence            467899988 5999999999999999999998888877788888876421   1  121211     0357888888776


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ......++-+     +++..++.++.
T Consensus       105 ~~~~~~~~~l-----~~~G~~v~~G~  125 (183)
T d1pqwa_         105 EAIQRGVQIL-----APGGRFIELGK  125 (183)
T ss_dssp             HHHHHHHHTE-----EEEEEEEECSC
T ss_pred             hHHHHHHHHh-----cCCCEEEEEcc
Confidence            5555544433     34556666653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.97  E-value=0.0051  Score=46.91  Aligned_cols=38  Identities=29%  Similarity=0.330  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ....++|.|||.|.+|.-+|..|.+.|++|+++++.+.
T Consensus        27 ~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          27 DPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             ccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            34567999999999999999999999999999988753

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.94  E-value=0.00054  Score=57.59  Aligned_cols=26  Identities=27%  Similarity=0.460  Sum_probs=24.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTL   57 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V   57 (335)
                      |||+|||+|.+|.+.|..|+++|++|
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCc
Confidence            79999999999999999999999743

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.92  E-value=0.0058  Score=46.27  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=32.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .+||.|||.|.+|.-+|..|.+.|.+|+++++.+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            57999999999999999999999999999998753

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.0065  Score=46.25  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=32.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ..+++.|||.|.+|.=+|..|.+.|++|+++++++.
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            357999999999999999999999999999998764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0041  Score=52.49  Aligned_cols=69  Identities=16%  Similarity=0.176  Sum_probs=47.4

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH--HHHhCCC--ceec---ChhhHhhcCCCEEEEecCc
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHH--TLLVHSRSDHSPA--VRQQLNA--PFFA---DLNDLCELHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~--~a~~~g~--~~~~---~~~~~~~~~aDvVIlavp~   98 (335)
                      |+++||.|.| .|.+|+.++..|.+.|.  +|++++|++....  .......  ....   +..+.+ .++|++|.|+..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~-~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAF-QGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGG-SSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccc-cccccccccccc
Confidence            5678999999 79999999999999884  8999999864321  1111111  1122   233344 789999988743

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.87  E-value=0.0033  Score=51.90  Aligned_cols=66  Identities=21%  Similarity=0.186  Sum_probs=44.2

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeE--EEEcCCCCcHHHHHhCCCce----ecC---hhhHhhcCCCEEEEecC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTL--LVHSRSDHSPAVRQQLNAPF----FAD---LNDLCELHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V--~~~dr~~~~~~~a~~~g~~~----~~~---~~~~~~~~aDvVIlavp   97 (335)
                      .+++|.|.| .|.+|+.+++.|.+.|++|  +...|+++.... ...++..    ..+   ..+++ +++|.||.+..
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~-~~~d~vi~~a~   77 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK-IGGEADVFIGDITDADSINPAF-QGIDALVILTS   77 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHH-TTCCTTEEECCTTSHHHHHHHH-TTCSEEEECCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHh-ccCCcEEEEeeecccccccccc-ccceeeEEEEe
Confidence            468999999 7999999999999999764  455666644331 1223321    122   23344 68999998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.85  E-value=0.006  Score=46.44  Aligned_cols=36  Identities=14%  Similarity=0.143  Sum_probs=33.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ..++|.|||.|.+|.-+|..|++.|.+|+++++++.
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            357999999999999999999999999999998764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.83  E-value=0.004  Score=53.28  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=33.4

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      +.+||.|+| .|.+|+.++..|.+.|++|++++|++..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            468999999 5999999999999999999999998653

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0063  Score=49.39  Aligned_cols=92  Identities=17%  Similarity=0.149  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcH-HHHHhC-----CCce-----ecChhhHhhcCCCEEEEe
Q 044593           28 KSTSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSP-AVRQQL-----NAPF-----FADLNDLCELHPDVVLLS   95 (335)
Q Consensus        28 ~~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~-~~a~~~-----g~~~-----~~~~~~~~~~~aDvVIla   95 (335)
                      ...++++.|||- ..+|.-+|..|.+.|..|+.++.+.... ......     +...     .+.+.+.. ..+|+||.+
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~-~~aDIvIsa  104 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCS-LDSDVVITG  104 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHH-HHCSEEEEC
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhcc-ccCCEEEEc
Confidence            456899999995 5679999999999999999887653211 000000     0000     01133444 579999999


Q ss_pred             cCchhHHHHHhhccccccCCccEEEEcCCC
Q 044593           96 TSILSTQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus        96 vp~~~~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      ++.....     +...++++|++|+|++..
T Consensus       105 vG~p~~~-----i~~d~ik~GavvIDvGi~  129 (171)
T d1edza1         105 VPSENYK-----FPTEYIKEGAVCINFACT  129 (171)
T ss_dssp             CCCTTCC-----BCTTTSCTTEEEEECSSS
T ss_pred             cCCCccc-----cChhhcccCceEeecccc
Confidence            9865421     223467899999999854

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.74  E-value=0.0039  Score=53.87  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      +|.|||+|..|.++|..|++.|++|.++|++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            799999999999999999999999999999863

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.71  E-value=0.0056  Score=51.88  Aligned_cols=35  Identities=20%  Similarity=0.164  Sum_probs=31.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~~   65 (335)
                      .++|.|||.|.-|.++|..|+++|. +|+++++++.
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            3789999999999999999999995 8999999764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.70  E-value=0.016  Score=46.98  Aligned_cols=91  Identities=11%  Similarity=0.024  Sum_probs=61.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceec----ChhhHh----hcCCCEEEEecCchh
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFA----DLNDLC----ELHPDVVLLSTSILS  100 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~----~~~~~~----~~~aDvVIlavp~~~  100 (335)
                      .+.+|.|.| .|.+|....+..+..|.+|++..++++..+.+++.|....-    +..+..    .+..|+||-++....
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~~  110 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRT  110 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTTT
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCchh
Confidence            467899999 69999999988889999999999999998888888775321    111111    035666666666555


Q ss_pred             HHHHHhhccccccCCccEEEEcCCC
Q 044593          101 TQSVLKSIPFQRLKRSTLFVDVLSV  125 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~iVvd~~Sv  125 (335)
                      +...+..+     +++..++.++..
T Consensus       111 ~~~~l~~l-----~~~Griv~~G~~  130 (176)
T d1xa0a2         111 LATVLSRM-----RYGGAVAVSGLT  130 (176)
T ss_dssp             HHHHHHTE-----EEEEEEEECSCC
T ss_pred             HHHHHHHh-----CCCceEEEeecc
Confidence            55555444     244555555544

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0067  Score=53.69  Aligned_cols=66  Identities=18%  Similarity=0.225  Sum_probs=44.5

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCC-eEEEEcCCCCcHHHHHh-CCCcee----cC---hhh-HhhcCCCEEEEecCc
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHH-TLLVHSRSDHSPAVRQQ-LNAPFF----AD---LND-LCELHPDVVLLSTSI   98 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~-~V~~~dr~~~~~~~a~~-~g~~~~----~~---~~~-~~~~~aDvVIlavp~   98 (335)
                      |||.|.| .|.||+.++..|.+.|+ +|+++|+.........+ .++...    ++   ..+ +. .++|+||-+.-.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~-~~~d~Vih~a~~   77 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHV-KKCDVVLPLVAI   77 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHH-HHCSEEEECBCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHH-hCCCcccccccc
Confidence            7999999 69999999999999995 89999987644322222 222211    11   122 33 679999986643

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.67  E-value=0.0074  Score=53.72  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=33.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      .+++|.|.| .|.+|+.++..|.++|++|.+..|+...
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~   47 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK   47 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence            478999999 7999999999999999999999888644

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.66  E-value=0.0057  Score=51.12  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=31.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCCc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDHS   66 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~~   66 (335)
                      +||+|||.|.-|.+.|..|+++  |++|++||+.+..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            5999999999999999999876  6899999998753

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0074  Score=45.92  Aligned_cols=75  Identities=13%  Similarity=0.115  Sum_probs=52.0

Q ss_pred             CCCeEEEEcccHH-----------HHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEE-ecC
Q 044593           30 TSLKIAVIGFGNF-----------GQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLL-STS   97 (335)
Q Consensus        30 ~~~kI~IIG~G~m-----------G~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIl-avp   97 (335)
                      ..+||.|||.|.+           +...+++|++.|++++.++.||++..          +|.     .-+|-+.+ .+-
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVs----------td~-----d~aD~lYfeplt   67 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVS----------TDY-----DTSDRLYFEPVT   67 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSST----------TST-----TSSSEEECCCCS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhh----------cCh-----hhcCceEEccCC
Confidence            4679999999854           77888999999999999999998653          222     23566665 444


Q ss_pred             chhHHHHHhhccccccCCccEEEEcCC
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...+..+++.-     +|..+++-+++
T Consensus        68 ~e~v~~Ii~~E-----~p~~ii~~~GG   89 (121)
T d1a9xa4          68 LEDVLEIVRIE-----KPKGVIVQYGG   89 (121)
T ss_dssp             HHHHHHHHHHH-----CCSEEECSSST
T ss_pred             HHHHHHHHHHh-----CCCEEEeehhh
Confidence            44455555433     35667777664

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.61  E-value=0.0088  Score=44.84  Aligned_cols=36  Identities=19%  Similarity=0.260  Sum_probs=32.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ...++.|||.|.+|.-+|..|++.|++|+++++.+.
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            357999999999999999999999999999998754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.60  E-value=0.0077  Score=45.85  Aligned_cols=35  Identities=23%  Similarity=0.021  Sum_probs=31.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      ...++.|||.|.+|.=+|..|++.|.+|+++.+++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            34689999999999999999999999999998763

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.58  E-value=0.0093  Score=46.07  Aligned_cols=36  Identities=17%  Similarity=0.230  Sum_probs=33.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ...+|.|||.|.+|.-+|..|++.|++|+++++.+.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            467999999999999999999999999999998764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.56  E-value=0.0066  Score=53.91  Aligned_cols=36  Identities=33%  Similarity=0.396  Sum_probs=31.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~~   65 (335)
                      .++||+|||+|.-|.+.|..|++.|  ++|++++++..
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            4678999999999999999998766  59999999864

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.018  Score=46.23  Aligned_cols=47  Identities=9%  Similarity=-0.019  Sum_probs=39.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP   76 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~   76 (335)
                      .+.+|.|+| .|.+|.......+..|.+|++.+++++..+.++++|..
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~   75 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW   75 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe
Confidence            467999996 67799999888888999999999999888877776653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.52  E-value=0.0062  Score=52.97  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=30.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      .+|.|||.|.+|.+.|..|++.|. +|+++|+++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            479999999999999999999995 799999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.49  E-value=0.011  Score=44.64  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ....+|.|||.|.+|.=+|..|++.|++|+++.+++.
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            3458999999999999999999999999999987654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.49  E-value=0.0094  Score=50.14  Aligned_cols=38  Identities=13%  Similarity=0.210  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ...++|.|||.|..|.+.|..|++.|++|++++++++.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            46789999999999999999999999999999988753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0099  Score=45.31  Aligned_cols=35  Identities=14%  Similarity=0.157  Sum_probs=32.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .++|.|||.|.+|.=+|..|.+.|.+|+++.+++.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            47999999999999999999999999999999764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.46  E-value=0.0088  Score=45.39  Aligned_cols=35  Identities=26%  Similarity=0.185  Sum_probs=32.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .++|.|||.|.+|--+|..|.+.|++|+++++++.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            46899999999999999999999999999998864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.43  E-value=0.0081  Score=53.25  Aligned_cols=37  Identities=19%  Similarity=0.130  Sum_probs=33.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      +++||.|.| .|-+|+.++..|.+.|++|.++||+...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            468999999 7999999999999999999999998753

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=95.34  E-value=0.025  Score=48.32  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEc
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHS   61 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~d   61 (335)
                      ...+++|.|-|+|++|+.+|+.|.+.|.+|++++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            3568899999999999999999999999987553

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.33  E-value=0.0099  Score=46.86  Aligned_cols=35  Identities=20%  Similarity=0.176  Sum_probs=31.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCC--eEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHH--TLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~--~V~~~dr~~~   65 (335)
                      ++||.|||.|..|..+|..|++.+.  +|+++++++.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            6799999999999999999999885  8899998874

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.32  E-value=0.014  Score=43.87  Aligned_cols=38  Identities=11%  Similarity=0.081  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ....++|+|||.|.+|.-+|..|++.|.+|+++++.+.
T Consensus        19 ~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          19 YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            34468999999999999999999999999999998764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.20  E-value=0.0087  Score=48.86  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=30.7

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      -|.|||.|.-|.+.|..|+++|++|.++++++.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            389999999999999999999999999999864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.0074  Score=53.02  Aligned_cols=35  Identities=23%  Similarity=0.464  Sum_probs=32.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      |..|.|||+|.-|.++|..|++.|++|+++++++.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            34799999999999999999999999999998764

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.011  Score=51.93  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCC
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRS   63 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~   63 (335)
                      .+||.|.| .|.+|+.++..|.+.|++|+++|+.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            36899999 7999999999999999999999874

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.12  E-value=0.04  Score=44.35  Aligned_cols=91  Identities=12%  Similarity=-0.003  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCce-----ecCh-hhHh----hcCCCEEEEecC
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPF-----FADL-NDLC----ELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~-----~~~~-~~~~----~~~aDvVIlavp   97 (335)
                      ..+.+|.|.|. |.+|...+...+..|.+|++.+++++..+.+++.|...     ..+. +...    ...+|+||-|+.
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG  107 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  107 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC
Confidence            35789999996 78998888888889999999999988888888888642     1111 1111    145888888887


Q ss_pred             chhHHHHHhhccccccCCccEEEEcCC
Q 044593           98 ILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        98 ~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .......+..     ++++..++.++.
T Consensus       108 ~~~~~~~~~~-----l~~~G~~v~~G~  129 (182)
T d1v3va2         108 GEFLNTVLSQ-----MKDFGKIAICGA  129 (182)
T ss_dssp             HHHHHHHGGG-----EEEEEEEEECCC
T ss_pred             chhhhhhhhh-----ccCCCeEEeecc
Confidence            5544444433     445566666653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.09  E-value=0.039  Score=47.06  Aligned_cols=37  Identities=16%  Similarity=0.305  Sum_probs=31.6

Q ss_pred             CeEEEE-c-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           32 LKIAVI-G-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        32 ~kI~II-G-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +||++| | .+.||.++|+.|.+.|++|++.||+++..+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~   39 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAK   39 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            578655 7 688999999999999999999999976554

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.09  E-value=0.012  Score=52.37  Aligned_cols=69  Identities=19%  Similarity=0.228  Sum_probs=49.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHH---HHhCCCce----ecC----hhhHhhcCCCEEEEecC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAV---RQQLNAPF----FAD----LNDLCELHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~---a~~~g~~~----~~~----~~~~~~~~aDvVIlavp   97 (335)
                      +.++|.|+| .|.+|++++..|.+.|++|.+..|++.....   ....|+..    ..+    .+.+. ..+|.+++..+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~-~~~~~~~~~~~   80 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLF-EGAHLAFINTT   80 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHH-TTCSEEEECCC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHh-cCCceEEeecc
Confidence            467999999 6999999999999999999999998865431   12235432    122    22344 68899988776


Q ss_pred             ch
Q 044593           98 IL   99 (335)
Q Consensus        98 ~~   99 (335)
                      ..
T Consensus        81 ~~   82 (350)
T d1xgka_          81 SQ   82 (350)
T ss_dssp             ST
T ss_pred             cc
Confidence            54

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.07  E-value=0.033  Score=44.65  Aligned_cols=89  Identities=12%  Similarity=0.063  Sum_probs=62.0

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHh--------hcCCCEEEEecCchhH
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLC--------ELHPDVVLLSTSILST  101 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~--------~~~aDvVIlavp~~~~  101 (335)
                      ...|.|-| .|.+|....+..+..|.+|++..+++++.+.++++|....-+.++..        .+..|+||-++-....
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vgg~~~  103 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQL  103 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTHHH
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCcHHHH
Confidence            45699998 69999999999899999999999999988888888875432222211        0356777777766655


Q ss_pred             HHHHhhccccccCCccEEEEcCC
Q 044593          102 QSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ...++.+     +++..++.++.
T Consensus       104 ~~~~~~l-----~~~G~iv~~G~  121 (167)
T d1tt7a2         104 ASLLSKI-----QYGGSVAVSGL  121 (167)
T ss_dssp             HHHHTTE-----EEEEEEEECCC
T ss_pred             HHHHHHh-----ccCceEEEeec
Confidence            5555444     34555555543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.04  E-value=0.013  Score=44.42  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=33.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ...++.|||.|.+|.=+|..|.+.|.+|+++.|++.
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            457999999999999999999999999999998764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.89  E-value=0.061  Score=45.95  Aligned_cols=39  Identities=15%  Similarity=0.166  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++++.|.| .+.||..+|..|++.|++|++.+|+++..+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~   44 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELD   44 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            577899998 699999999999999999999999976544

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.87  E-value=0.012  Score=50.46  Aligned_cols=32  Identities=22%  Similarity=0.338  Sum_probs=29.8

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      -|.|||.|.+|.+.|..|+++|++|+++|+..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999999999999999999864

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.023  Score=52.60  Aligned_cols=35  Identities=29%  Similarity=0.322  Sum_probs=31.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      +..||.|||+|.+|+-+++.|...|. +++++|.+.
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            35799999999999999999999998 899998763

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=94.72  E-value=0.03  Score=47.71  Aligned_cols=43  Identities=21%  Similarity=0.281  Sum_probs=35.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ   72 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~   72 (335)
                      +++.+.|.| .+.||.++|+.|.+.|++|++.||+++..+.+.+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~   47 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA   47 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            466777888 6999999999999999999999999876554443

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.62  E-value=0.01  Score=49.36  Aligned_cols=36  Identities=17%  Similarity=0.177  Sum_probs=31.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC-------CeEEEEcCCCCc
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH-------HTLLVHSRSDHS   66 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G-------~~V~~~dr~~~~   66 (335)
                      ..||+|||.|.-|-+.|..|.++|       ++|++||+++..
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            359999999999999999999988       479999998753

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.62  E-value=0.016  Score=47.15  Aligned_cols=33  Identities=18%  Similarity=0.249  Sum_probs=29.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC--CeEEEEcCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH--HTLLVHSRSD   64 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G--~~V~~~dr~~   64 (335)
                      |||.|||.|..|..+|..|++.+  .+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            89999999999999999999874  5899998765

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.45  E-value=0.068  Score=45.49  Aligned_cols=36  Identities=17%  Similarity=0.381  Sum_probs=30.9

Q ss_pred             eEEEE-c-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           33 KIAVI-G-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        33 kI~II-G-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      ||++| | .+.||.++|..|.+.|++|++++|+++..+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~   40 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLR   40 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            67655 6 689999999999999999999999976554

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.43  E-value=0.02  Score=48.45  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=29.4

Q ss_pred             CeEEEE-c-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           32 LKIAVI-G-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~II-G-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      |||.|| | .+.||.++|+.|.+.|++|++.|+++.
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            677655 6 688999999999999999999998864

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.43  E-value=0.029  Score=42.71  Aligned_cols=36  Identities=22%  Similarity=0.213  Sum_probs=33.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ...++.|||.|.+|.=+|..|.+.|.+|+++++.+.
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            457999999999999999999999999999988764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.36  E-value=0.015  Score=47.82  Aligned_cols=63  Identities=13%  Similarity=0.148  Sum_probs=40.4

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCC--eEEEEcCCCCcHHHHHhCCCc-eecChhhHh---hcCCCEEEEecC
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHH--TLLVHSRSDHSPAVRQQLNAP-FFADLNDLC---ELHPDVVLLSTS   97 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~~a~~~g~~-~~~~~~~~~---~~~aDvVIlavp   97 (335)
                      .+||.|+| .|.+|+.+++.|.+.|+  +|....|++....    ..+. ...+..+..   ...+|.||.|+-
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~----~~~~~~~~d~~~~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH----PRLDNPVGPLAELLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC----TTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc----ccccccccchhhhhhccccchheeeeeee
Confidence            47999999 59999999999999997  5666666543211    0010 112222221   146899998863

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.019  Score=48.75  Aligned_cols=35  Identities=14%  Similarity=0.277  Sum_probs=32.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      +..||.|||+|.+|+.++..|...|. +++++|.+.
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            45699999999999999999999997 899999875

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.32  E-value=0.018  Score=51.92  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=28.9

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEc
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHS   61 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~d   61 (335)
                      +|||.|.| .|.+|+.++..|.+.||+|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            58999999 79999999999999999999998

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.26  E-value=0.088  Score=45.02  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           28 KSTSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        28 ~~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      ..+++.+.|.| .+.||..+|+.|.+.|++|++.||+++..+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~   44 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQ   44 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            34566777778 688999999999999999999999976554

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.021  Score=49.48  Aligned_cols=32  Identities=25%  Similarity=0.276  Sum_probs=29.9

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      |.|||.|.-|.+.|..|+++|++|+++++++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~   33 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDR   33 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            78999999999999999999999999998753

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=94.13  E-value=0.049  Score=46.68  Aligned_cols=88  Identities=13%  Similarity=-0.011  Sum_probs=60.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh----CCCc---eecChhhHh-hcCCCEEEEecCchhH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ----LNAP---FFADLNDLC-ELHPDVVLLSTSILST  101 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~----~g~~---~~~~~~~~~-~~~aDvVIlavp~~~~  101 (335)
                      .+++|.=+|+|. | .++..+++.|.+|+++|.++..++.+++    .|+.   ...+..+.. ...+|+|+........
T Consensus       120 ~g~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~~l  197 (254)
T d2nxca1         120 PGDKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAELH  197 (254)
T ss_dssp             TTCEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHHHH
T ss_pred             ccCEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccccH
Confidence            467999999996 3 3555677889999999999988765543    4553   223433332 1568998877666666


Q ss_pred             HHHHhhccccccCCccEEE
Q 044593          102 QSVLKSIPFQRLKRSTLFV  120 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~iVv  120 (335)
                      .++++.+. ..++||..++
T Consensus       198 ~~l~~~~~-~~LkpGG~li  215 (254)
T d2nxca1         198 AALAPRYR-EALVPGGRAL  215 (254)
T ss_dssp             HHHHHHHH-HHEEEEEEEE
T ss_pred             HHHHHHHH-HhcCCCcEEE
Confidence            77777774 5677776544

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.12  Score=43.63  Aligned_cols=39  Identities=21%  Similarity=0.292  Sum_probs=33.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      .++.+.|.| .+.||..+|..|.+.|.+|+++||+++..+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~   45 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLE   45 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            456667778 578999999999999999999999987654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.07  E-value=0.028  Score=39.19  Aligned_cols=45  Identities=16%  Similarity=0.178  Sum_probs=39.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLN   74 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g   74 (335)
                      ..++|.|.| .|.+|......++..|++|++..++++..+.++++|
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            567899998 599999999988999999999999998888887765

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.03  E-value=0.061  Score=47.02  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=29.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEE
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVH   60 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~   60 (335)
                      ..++++|+|-|+|++|...|+.|.+.|.+|+++
T Consensus        33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~v   65 (293)
T d1hwxa1          33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAV   65 (293)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            356789999999999999999999999988765

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=94.01  E-value=0.025  Score=47.28  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=31.4

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      -|.|||.|..|.+.|..|+++|++|+++++++..
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~   37 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL   37 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4899999999999999999999999999998753

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.046  Score=46.10  Aligned_cols=39  Identities=10%  Similarity=0.153  Sum_probs=33.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||.++|+.|++.|++|++.||+++..+
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   43 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGE   43 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence            455566777 688999999999999999999999987654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=93.98  E-value=0.03  Score=48.64  Aligned_cols=30  Identities=27%  Similarity=0.349  Sum_probs=28.1

Q ss_pred             eEEEEc-ccHHHHHHHHHHHHcCCeEEEEcC
Q 044593           33 KIAVIG-FGNFGQFLAKAFARHHHTLLVHSR   62 (335)
Q Consensus        33 kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr   62 (335)
                      ||.|.| .|.||+.++..|.++|++|+++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            899998 799999999999999999999985

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.90  E-value=0.032  Score=47.31  Aligned_cols=40  Identities=13%  Similarity=0.167  Sum_probs=33.9

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      .+++++.|.| .+.||..+|+.|.+.|++|++.||+++..+
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~   43 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLR   43 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            3566777778 588999999999999999999999976554

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.89  E-value=0.025  Score=49.68  Aligned_cols=36  Identities=14%  Similarity=0.225  Sum_probs=32.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ....|.|||+|.-|-++|..|++.|++|+++|++++
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            345799999999999999999999999999998765

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.032  Score=47.37  Aligned_cols=40  Identities=15%  Similarity=0.147  Sum_probs=34.7

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      .+++++.|.| .+.||.++|+.|.+.|++|++.||+++..+
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~   45 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLD   45 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence            3577888888 689999999999999999999999976554

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.84  E-value=0.12  Score=44.07  Aligned_cols=39  Identities=18%  Similarity=0.136  Sum_probs=33.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||.++|+.|.+.|++|+++||+++..+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~   43 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALE   43 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            466777778 588999999999999999999999976554

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.83  E-value=0.095  Score=44.45  Aligned_cols=39  Identities=13%  Similarity=0.198  Sum_probs=32.9

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||..+|+.|.+.|++|++.+|+++..+
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   44 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGE   44 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            456666667 689999999999999999999999876554

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.77  E-value=0.098  Score=44.59  Aligned_cols=39  Identities=18%  Similarity=0.137  Sum_probs=32.9

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||.++|..|.+.|++|++.||+++..+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~   42 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLE   42 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            355666778 688999999999999999999999986654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.77  E-value=0.033  Score=46.68  Aligned_cols=94  Identities=13%  Similarity=0.141  Sum_probs=59.2

Q ss_pred             cCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh----CCC--ce-ecChhhHh-hcCCCEEEEec--
Q 044593           27 VKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ----LNA--PF-FADLNDLC-ELHPDVVLLST--   96 (335)
Q Consensus        27 ~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~----~g~--~~-~~~~~~~~-~~~aDvVIlav--   96 (335)
                      ......+|.=||||.  +.++..|.+.|++|+++|.+++.++.|++    .+.  .. ..+..++. .+..|+|+.+-  
T Consensus        38 ~~~~~~~iLDiGcGt--G~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~  115 (251)
T d1wzna1          38 AKREVRRVLDLACGT--GIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFST  115 (251)
T ss_dssp             CSSCCCEEEEETCTT--CHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSG
T ss_pred             cCCCCCEEEEeCCCC--CccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhh
Confidence            445567899999997  34566788899999999999876665543    333  21 22333321 14578888752  


Q ss_pred             ----CchhHHHHHhhccccccCCcc-EEEEcC
Q 044593           97 ----SILSTQSVLKSIPFQRLKRST-LFVDVL  123 (335)
Q Consensus        97 ----p~~~~~~vl~~l~~~~l~~~~-iVvd~~  123 (335)
                          +......+++++. ..++||. +|+|..
T Consensus       116 ~~~~~~~~~~~~L~~~~-~~LkpgG~lii~~~  146 (251)
T d1wzna1         116 IMYFDEEDLRKLFSKVA-EALKPGGVFITDFP  146 (251)
T ss_dssp             GGGSCHHHHHHHHHHHH-HHEEEEEEEEEEEE
T ss_pred             hhcCChHHHHHHHHHHH-HHcCCCcEEEEEec
Confidence                1223456777774 5677765 566654

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.034  Score=48.87  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=30.4

Q ss_pred             CeE-EEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           32 LKI-AVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        32 ~kI-~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      +|| .|.| .|.+|+.++..|.++||+|+++||...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            589 6888 799999999999999999999999653

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.69  E-value=0.037  Score=48.03  Aligned_cols=34  Identities=21%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      +||.|.| .|.+|+.++..|.++||+|+++||...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            5799999 799999999999999999999998764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.072  Score=46.53  Aligned_cols=39  Identities=15%  Similarity=0.168  Sum_probs=33.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||.++|+.|.+.|++|++.+|+++..+
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~   50 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLK   50 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            566777778 688999999999999999999999976554

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.026  Score=47.96  Aligned_cols=39  Identities=21%  Similarity=0.207  Sum_probs=32.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++++.|.| .+.||..+|+.|.+.|++|++.||+++..+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~   44 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQ   44 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHG
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            455666667 799999999999999999999999875543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.046  Score=46.21  Aligned_cols=42  Identities=19%  Similarity=0.188  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcc-c--HHHHHHHHHHHHcCCeEEEEcCCCCcHHHH
Q 044593           29 STSLKIAVIGF-G--NFGQFLAKAFARHHHTLLVHSRSDHSPAVR   70 (335)
Q Consensus        29 ~~~~kI~IIG~-G--~mG~siA~~L~~~G~~V~~~dr~~~~~~~a   70 (335)
                      .++++|.|.|. |  -||.++|+.|.+.|++|++.+|+++..+.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~   47 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV   47 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            35678888886 4  489999999999999999999997655433

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.41  E-value=0.11  Score=44.22  Aligned_cols=39  Identities=15%  Similarity=0.192  Sum_probs=32.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||.++|+.|.+.|++|++.+|+++..+
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   49 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN   49 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            456666667 689999999999999999999999876554

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=93.38  E-value=0.03  Score=48.89  Aligned_cols=33  Identities=12%  Similarity=0.344  Sum_probs=29.3

Q ss_pred             eEEEEcccHHHHHHHHHHH-----HcCCeEEEEcCCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFA-----RHHHTLLVHSRSDH   65 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~-----~~G~~V~~~dr~~~   65 (335)
                      -|.|||.|..|.++|..|+     ++|++|+++++++.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            4899999999999999996     47999999998754

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.037  Score=48.76  Aligned_cols=31  Identities=19%  Similarity=0.174  Sum_probs=29.0

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSR   62 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr   62 (335)
                      +||.|.| .|-||+.++..|.+.|++|+++|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            6899998 799999999999999999999985

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.35  E-value=0.035  Score=47.88  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=33.4

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||.++|+.|.+.|++|++.||+++..+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~   43 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLE   43 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            466677778 689999999999999999999999976554

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.33  E-value=0.054  Score=46.19  Aligned_cols=40  Identities=13%  Similarity=0.069  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcc-c--HHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           29 STSLKIAVIGF-G--NFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        29 ~~~~kI~IIG~-G--~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      .+++++.|.|. |  -||.++|+.|.+.|++|++.+|+++..+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~   45 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEK   45 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            46788899995 5  4999999999999999999999976443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.091  Score=42.29  Aligned_cols=89  Identities=12%  Similarity=0.028  Sum_probs=57.1

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhh------HhhcCCCEEEEecCchhHHH
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLND------LCELHPDVVLLSTSILSTQS  103 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~------~~~~~aDvVIlavp~~~~~~  103 (335)
                      ..+|.|.| .|.+|....+..+..|.+|++..++++..+.+++.|....-+.++      +.....|.+|=++-......
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vgg~~~~~  111 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDKVLAK  111 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSCHHHHHH
T ss_pred             CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcchHHHHH
Confidence            34788887 699999999999999999999999998888788877643221111      11022466666665544444


Q ss_pred             HHhhccccccCCccEEEEcCC
Q 044593          104 VLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus       104 vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      .++.+     +++..++.++.
T Consensus       112 ~l~~l-----~~~Griv~~G~  127 (177)
T d1o89a2         112 VLAQM-----NYGGCVAACGL  127 (177)
T ss_dssp             HHHTE-----EEEEEEEECCC
T ss_pred             HHHHh-----ccccceEeecc
Confidence            44333     34455555543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.32  E-value=0.042  Score=48.35  Aligned_cols=36  Identities=11%  Similarity=0.129  Sum_probs=31.9

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      ++.++|.|.| .|.+|+.++..|.+.|++|+++|+..
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4567899998 79999999999999999999998743

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=93.29  E-value=0.024  Score=47.15  Aligned_cols=90  Identities=14%  Similarity=0.110  Sum_probs=58.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCc--eecChhhHh--hcCCCEEEEecCc-h---hH
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAP--FFADLNDLC--ELHPDVVLLSTSI-L---ST  101 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~--~~~~~~~~~--~~~aDvVIlavp~-~---~~  101 (335)
                      ...||.=||||  .+.++..|++.|++|+++|.++..++.+++.+..  ...+..++.  ....|+|+..-.. .   ..
T Consensus        42 ~~~~vLDiGcG--~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~  119 (246)
T d2avna1          42 NPCRVLDLGGG--TGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK  119 (246)
T ss_dssp             SCCEEEEETCT--TCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred             CCCEEEEECCC--CchhcccccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhH
Confidence            46799999998  3456667788899999999999888878776543  122222221  1457888764322 1   24


Q ss_pred             HHHHhhccccccCCccE-EEEc
Q 044593          102 QSVLKSIPFQRLKRSTL-FVDV  122 (335)
Q Consensus       102 ~~vl~~l~~~~l~~~~i-Vvd~  122 (335)
                      ..+++++. ..+++|.+ ++++
T Consensus       120 ~~~l~~i~-r~Lk~gG~~ii~~  140 (246)
T d2avna1         120 DKAFSEIR-RVLVPDGLLIATV  140 (246)
T ss_dssp             HHHHHHHH-HHEEEEEEEEEEE
T ss_pred             HHHHHHHH-hhcCcCcEEEEEE
Confidence            56777774 56777665 4444

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.28  E-value=0.038  Score=47.14  Aligned_cols=40  Identities=10%  Similarity=0.038  Sum_probs=33.4

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      .+++.+.|.| .+.||.++|+.|.+.|++|++.||+++..+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~   44 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQ   44 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4566666778 688999999999999999999999876554

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.23  E-value=0.042  Score=47.63  Aligned_cols=39  Identities=10%  Similarity=0.054  Sum_probs=32.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .|.||.++|+.|.+.|++|++.||+.+..+
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~   63 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLK   63 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence            445666667 799999999999999999999999976543

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.23  E-value=0.022  Score=50.47  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=27.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeE--EEEcC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTL--LVHSR   62 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V--~~~dr   62 (335)
                      .+|||.|.| .|.+|+.++..|.++|++|  ++.|+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~   36 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   36 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC
Confidence            378999999 7999999999999999864  44553

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=93.22  E-value=0.082  Score=45.27  Aligned_cols=32  Identities=25%  Similarity=0.241  Sum_probs=28.5

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEE
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVH   60 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~   60 (335)
                      .+.++|.|-|+|++|...|+.|.+.|.+|+++
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e~Gakvvav   65 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAELGAKAVTL   65 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            46789999999999999999999999987643

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.19  E-value=0.037  Score=44.34  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=22.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHH   54 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G   54 (335)
                      ++.+|+++|+|.+|+.+++.+.++.
T Consensus         3 k~i~I~l~G~G~VG~~l~~~l~~~~   27 (168)
T d1ebfa1           3 KVVNVAVIGAGVVGSAFLDQLLAMK   27 (168)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHCC
T ss_pred             CEEEEEEEeCCHHHHHHHHHHHHhH
Confidence            5678999999999999999998753

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=93.14  E-value=0.14  Score=43.16  Aligned_cols=37  Identities=14%  Similarity=0.196  Sum_probs=31.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      +++.+.|.| .+.||.++|+.|.+.|++|++.||++..
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            455666678 5889999999999999999999998753

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.14  E-value=0.05  Score=46.97  Aligned_cols=39  Identities=18%  Similarity=0.266  Sum_probs=33.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||..+|+.|.+.|++|++.||+++..+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~   43 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLA   43 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            566777888 699999999999999999999999976543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=93.12  E-value=0.17  Score=43.10  Aligned_cols=37  Identities=22%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .+++.+.|.| .+.||.++|+.|.+.|++|++.+|+.+
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            4566677777 689999999999999999999999864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.11  E-value=0.05  Score=46.32  Aligned_cols=40  Identities=20%  Similarity=0.177  Sum_probs=33.8

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      .+++.+.|.| .+.||.++|+.|.+.|++|++.||+++..+
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~   43 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEAS   43 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            3566777888 588999999999999999999999976543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.11  E-value=0.054  Score=46.27  Aligned_cols=40  Identities=13%  Similarity=0.132  Sum_probs=34.4

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      -+++++.|.| .+.||.++|+.|.+.|++|++.||+++..+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   43 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGA   43 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4677888888 578999999999999999999999976543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.07  E-value=0.04  Score=47.23  Aligned_cols=40  Identities=15%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      .+++++.|.| .+.||.++|+.|.+.|++|++++|+++..+
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~   46 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELN   46 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4567777888 688999999999999999999999976554

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.039  Score=47.00  Aligned_cols=38  Identities=13%  Similarity=0.083  Sum_probs=32.0

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      ++.+.|.| .+.||.++|+.|.+.|++|++.||+++..+
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~   41 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGV   41 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            45566667 588999999999999999999999986554

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.02  E-value=0.055  Score=45.78  Aligned_cols=39  Identities=18%  Similarity=0.233  Sum_probs=33.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++++.|.| .+.||.++|+.|.+.|++|++.+|+++..+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~   43 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLV   43 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            567888888 588999999999999999999999976543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.93  E-value=0.045  Score=46.01  Aligned_cols=38  Identities=11%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP   67 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~   67 (335)
                      +++++.|.| .+.||..+|+.|.+.|++|++.||+++..
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l   41 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL   41 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            567888888 58899999999999999999999986443

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=92.91  E-value=0.049  Score=45.93  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=32.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ..|.|||.|..|...|..++++|++|.++++++..
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            46999999999999999999999999999998764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.88  E-value=0.057  Score=46.16  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=33.4

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||..+|..|.+.|++|++.||+++..+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~   46 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELN   46 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            566777778 588999999999999999999999876554

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.87  E-value=0.061  Score=45.90  Aligned_cols=39  Identities=23%  Similarity=0.217  Sum_probs=33.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++++.|.| .+.||..+|+.|.+.|++|++.+|+++..+
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~   47 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAV   47 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            455666778 688999999999999999999999987654

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.80  E-value=0.063  Score=46.80  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=29.6

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      +++.|.| .|-+|+.++..|.+.||+|+++||..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5677888 79999999999999999999999854

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.056  Score=46.13  Aligned_cols=39  Identities=18%  Similarity=0.206  Sum_probs=33.2

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||.++|+.|.+.|++|++++|+++..+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~   48 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE   48 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            456677778 699999999999999999999999976554

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.75  E-value=0.043  Score=43.41  Aligned_cols=33  Identities=12%  Similarity=0.068  Sum_probs=28.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSR   62 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr   62 (335)
                      +.++|.|||.|..|.-+|..|++.|.+|.++.+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~   34 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLV   34 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEe
Confidence            357899999999999999999999987655543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.74  E-value=0.075  Score=45.01  Aligned_cols=40  Identities=13%  Similarity=0.196  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcc-c--HHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           29 STSLKIAVIGF-G--NFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        29 ~~~~kI~IIG~-G--~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      .+++++.|.|+ |  -||.++|+.|.+.|++|++.+|+++..+
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~   48 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRP   48 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence            46777888896 4  5999999999999999999999876544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.71  E-value=0.21  Score=42.20  Aligned_cols=37  Identities=30%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             CeEE-EEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           32 LKIA-VIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        32 ~kI~-IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      .||+ |.| .+.||..+|+.|.+.|++|+++||+++..+
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~   48 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCD   48 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence            3555 557 689999999999999999999999876554

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.69  E-value=0.065  Score=45.60  Aligned_cols=39  Identities=13%  Similarity=0.248  Sum_probs=33.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||.++|+.|.+.|++|++.||+++..+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~   44 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGR   44 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            566778888 699999999999999999999999976554

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.048  Score=46.81  Aligned_cols=41  Identities=22%  Similarity=0.256  Sum_probs=35.3

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAV   69 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~   69 (335)
                      .+++++.|.| .+.||.++|+.|.+.|++|++.+|+++..+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~   53 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQK   53 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            3577888888 5789999999999999999999999876543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.58  E-value=0.065  Score=45.27  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=33.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP   67 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~   67 (335)
                      +++++.|.| .+.||..+|+.|.+.|++|++.+|+.+..
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~   42 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLL   42 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            466788888 57899999999999999999999997654

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.46  E-value=0.065  Score=45.45  Aligned_cols=39  Identities=15%  Similarity=0.104  Sum_probs=33.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||..+|+.|.+.|++|++.||+++..+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~   44 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGK   44 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            456677778 588999999999999999999999986554

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.40  E-value=0.36  Score=40.96  Aligned_cols=37  Identities=16%  Similarity=0.164  Sum_probs=31.9

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .+++++.|.| .+.||..+|+.|.+.|++|++.+++.+
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~   53 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST   53 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            4567777778 799999999999999999999988754

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.06  Score=45.58  Aligned_cols=39  Identities=15%  Similarity=0.213  Sum_probs=32.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||.++|+.|.+.|++|+++||+++..+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~   42 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQ   42 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            455566668 689999999999999999999999976544

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.35  E-value=0.061  Score=45.04  Aligned_cols=34  Identities=26%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .||.|.| .|.||..+|+.|.+.|++|++.||+++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            4798998 699999999999999999999999875

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.17  Score=43.26  Aligned_cols=39  Identities=13%  Similarity=0.321  Sum_probs=33.3

Q ss_pred             CCCeEEEE-c-ccHHHHHHHHHHHHc-CCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVI-G-FGNFGQFLAKAFARH-HHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~II-G-~G~mG~siA~~L~~~-G~~V~~~dr~~~~~~   68 (335)
                      ++++|+|| | .+-||..+|+.|.+. |.+|++++|+++..+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~   42 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQ   42 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            36899888 4 799999999999875 899999999987654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.10  E-value=0.086  Score=44.15  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      +++|.|.| .|.||..+|+.|.+.|++|.++|+++.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            67899999 589999999999999999999998764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.09  E-value=0.06  Score=45.90  Aligned_cols=39  Identities=13%  Similarity=0.210  Sum_probs=32.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++++.|.| .+.||..+|+.|.+.|++|++.||+++..+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~   43 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAAR   43 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            455667778 699999999999999999999999876543

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=92.08  E-value=0.052  Score=46.93  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=39.9

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHh-hcCCCEEEEec
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLC-ELHPDVVLLST   96 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~-~~~aDvVIlav   96 (335)
                      .+||.|.| .|.+|+.++..|.+.|+.|++.+...+.       .+.......+++ ....|.|+.+.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~-------~~~~~~~~~~~~~~~~~d~v~~~a   62 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL-------NLLDSRAVHDFFASERIDQVYLAA   62 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC-------CTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhc-------cccCHHHHHHHHhhcCCCEEEEcc
Confidence            46999999 7999999999999999998877654321       111111112222 14689998865

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.05  E-value=0.068  Score=41.67  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=28.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      .||.|||.|.+|.-+|..|++ +.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            389999999999999999975 77999998754

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.03  E-value=0.22  Score=41.93  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=49.0

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHH-HcCCeEEEEc-C-----CCCcH------HHHHhCCCc------eecChhhHhhcC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFA-RHHHTLLVHS-R-----SDHSP------AVRQQLNAP------FFADLNDLCELH   88 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~-~~G~~V~~~d-r-----~~~~~------~~a~~~g~~------~~~~~~~~~~~~   88 (335)
                      ..+.++|+|-|+|++|+.+|+.|. +.|..|++++ .     +++-.      +...+.+..      ...+.+++...+
T Consensus        28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (234)
T d1b26a1          28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELD  107 (234)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHTSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccccc
Confidence            346889999999999999999996 5698876553 2     22211      111122221      112344444358


Q ss_pred             CCEEEEecCchh-HHHHHhhc
Q 044593           89 PDVVLLSTSILS-TQSVLKSI  108 (335)
Q Consensus        89 aDvVIlavp~~~-~~~vl~~l  108 (335)
                      ||+++-|.-... ..+.+..+
T Consensus       108 ~DI~~PcA~~~~I~~~~a~~l  128 (234)
T d1b26a1         108 VDILVPAALEGAIHAGNAERI  128 (234)
T ss_dssp             CSEEEECSCTTCBCHHHHTTC
T ss_pred             cceeecchhcccccHHHHHHh
Confidence            999988765554 34555555

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.98  E-value=0.061  Score=46.31  Aligned_cols=39  Identities=15%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++++.|.| .+.||.++|+.|.+.|++|++.||+++..+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~   42 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLE   42 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            456677778 688999999999999999999999976544

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.97  E-value=0.093  Score=44.36  Aligned_cols=40  Identities=13%  Similarity=0.118  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcc-cH--HHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593           28 KSTSLKIAVIGF-GN--FGQFLAKAFARHHHTLLVHSRSDHSP   67 (335)
Q Consensus        28 ~~~~~kI~IIG~-G~--mG~siA~~L~~~G~~V~~~dr~~~~~   67 (335)
                      .++++++.|.|+ |.  ||..+|+.|++.|++|++.+++.+..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL   45 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence            356788999995 64  99999999999999999999987543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.95  E-value=0.095  Score=40.74  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=30.5

Q ss_pred             CCeEEEE--cccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           31 SLKIAVI--GFGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        31 ~~kI~II--G~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ...+.|+  |.|.||..+|..|++.|++|+++.+.+..
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            4455555  89999999999999999999999987653

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.90  E-value=0.068  Score=38.26  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=30.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      |||.|||.|.=--+++..|.+..++|+++--|+-.
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~G~   35 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNAGT   35 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTG
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCccc
Confidence            89999999999999999999988999888545543

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=91.81  E-value=0.032  Score=47.47  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=26.4

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      |||.|.| .|.+|+.++..|.+.|+. ++.+++.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~-v~~~~~~   33 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNL-IALDVHS   33 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEE-EEECTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCE-EEEECCC
Confidence            8999999 699999999999998864 4455554

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.61  E-value=0.094  Score=46.78  Aligned_cols=32  Identities=22%  Similarity=0.551  Sum_probs=28.4

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHH-cCCeEEEEcC
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFAR-HHHTLLVHSR   62 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~-~G~~V~~~dr   62 (335)
                      .|||.|.| .|-||+.++..|.+ .|++|+++|+
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            58999998 79999999999865 7899999984

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.044  Score=45.74  Aligned_cols=43  Identities=16%  Similarity=0.071  Sum_probs=35.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ   72 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~   72 (335)
                      .....||..+|||.  +..+..|++.|++|+++|.++..++.+.+
T Consensus        43 ~~~~~rvLd~GCG~--G~~a~~LA~~G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          43 GKSGLRVFFPLCGK--AVEMKWFADRGHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             TCCSCEEEETTCTT--CTHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCC--cHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            34678999999998  46788889999999999999988765544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.49  E-value=0.083  Score=45.09  Aligned_cols=39  Identities=18%  Similarity=0.221  Sum_probs=31.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~   68 (335)
                      +++.+.|.| .+.||.++|+.|.+.|++|++.+|+++..+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~   43 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLE   43 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            344445557 699999999999999999999999976554

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.31  E-value=0.091  Score=46.76  Aligned_cols=32  Identities=16%  Similarity=0.352  Sum_probs=27.9

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCe-EEEEcCC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHT-LLVHSRS   63 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~-V~~~dr~   63 (335)
                      |||.|.| +|-+|+.++..|.+.|++ |.++|+.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            7999998 799999999999999996 5667754

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=91.29  E-value=0.091  Score=42.08  Aligned_cols=30  Identities=17%  Similarity=0.418  Sum_probs=27.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHS   61 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~d   61 (335)
                      |||||=|+|+||..+.+.+...+.+|+.++
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN   30 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALIN   30 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence            699999999999999999999999887664

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.28  E-value=0.11  Score=41.89  Aligned_cols=88  Identities=15%  Similarity=0.100  Sum_probs=55.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH----HhCCCc----eecChhhHh-hcCCCEEEEec----
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR----QQLNAP----FFADLNDLC-ELHPDVVLLST----   96 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a----~~~g~~----~~~~~~~~~-~~~aDvVIlav----   96 (335)
                      ...+|.=|||| .| ..+..|++.|++|+++|.++..++.+    ...|+.    ...+..+.. ....|+|+...    
T Consensus        30 ~~grvLDiGcG-~G-~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~  107 (198)
T d2i6ga1          30 APGRTLDLGCG-NG-RNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMF  107 (198)
T ss_dssp             CSCEEEEETCT-TS-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGG
T ss_pred             CCCcEEEECCC-CC-HHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeec
Confidence            45589999999 33 46678888999999999998766543    334443    112322211 14568888644    


Q ss_pred             -CchhHHHHHhhccccccCCccEEE
Q 044593           97 -SILSTQSVLKSIPFQRLKRSTLFV  120 (335)
Q Consensus        97 -p~~~~~~vl~~l~~~~l~~~~iVv  120 (335)
                       |......+++++. ..++++..++
T Consensus       108 ~~~~~~~~~l~~~~-~~L~pgG~~~  131 (198)
T d2i6ga1         108 LEAQTIPGLIANMQ-RCTKPGGYNL  131 (198)
T ss_dssp             SCTTHHHHHHHHHH-HTEEEEEEEE
T ss_pred             CCHHHHHHHHHHHH-HHcCCCcEEE
Confidence             3344566777764 4566765433

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.19  E-value=0.052  Score=43.60  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=32.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      +..+|.|||.|..|.+-|..+++.|.+|+++++.+.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            456899999999999999999999999999987653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.19  E-value=0.31  Score=41.16  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=29.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      +++.+.|.| .+.||.++|+.|.+.|++|++.+|++.
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~   39 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA   39 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            344555557 688999999999999999999999863

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.08  E-value=0.1  Score=43.91  Aligned_cols=38  Identities=26%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP   67 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~   67 (335)
                      +++++.|.| .+.||..+|+.|.+.|++|++.+|+++..
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            566777778 57899999999999999999999987644

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.03  E-value=0.17  Score=37.26  Aligned_cols=35  Identities=17%  Similarity=0.129  Sum_probs=29.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHc---CCeEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARH---HHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~---G~~V~~~dr~~~   65 (335)
                      ..+|.|||.|.+|--+|..|.+.   |.+|+++.+.+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            47999999999999999876653   789999988754

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.14  Score=38.87  Aligned_cols=76  Identities=11%  Similarity=0.145  Sum_probs=52.0

Q ss_pred             CCCCeEEEEcccHH-----------HHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEE-ec
Q 044593           29 STSLKIAVIGFGNF-----------GQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLL-ST   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~m-----------G~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIl-av   96 (335)
                      ...+||.|||.|.+           +...+++|++.|++++.++.||++..          +|.     .-+|-+.+ .+
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVs----------td~-----d~aD~lYfePl   69 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIM----------TDP-----EMADATYIEPI   69 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGG----------GCG-----GGSSEEECSCC
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhh----------cCh-----hhcceeeeecC
Confidence            35689999999864           77888999999999999999998764          222     22566655 44


Q ss_pred             CchhHHHHHhhccccccCCccEEEEcCC
Q 044593           97 SILSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        97 p~~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      -...+.++++.-     +|..++.-+++
T Consensus        70 t~e~v~~Ii~~E-----~pd~il~~~GG   92 (127)
T d1a9xa3          70 HWEVVRKIIEKE-----RPDAVLPTMGG   92 (127)
T ss_dssp             CHHHHHHHHHHH-----CCSEEECSSSH
T ss_pred             CHHHHHHHHHHh-----CcCCeEEEeee
Confidence            444455555443     35556665553

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.88  E-value=0.099  Score=42.56  Aligned_cols=31  Identities=16%  Similarity=0.017  Sum_probs=29.1

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      |.|||.|..|.+.|..+++.|.+|.++++++
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            7899999999999999999999999999864

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.79  E-value=0.33  Score=37.95  Aligned_cols=67  Identities=16%  Similarity=0.220  Sum_probs=49.2

Q ss_pred             CCCeEEEEc-c-cHHHHHHHHHHHHcCCeEEEEcCCCC-----cHH----HHHhCC--CceecChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIG-F-GNFGQFLAKAFARHHHTLLVHSRSDH-----SPA----VRQQLN--APFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG-~-G~mG~siA~~L~~~G~~V~~~dr~~~-----~~~----~a~~~g--~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      ++.||++|| . .++-.|+..++...|++++++.+..-     ..+    .+.+.+  +..++++++++ +++|+|..-+
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai-~~aDviyt~~   80 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEAL-AGADVVYTDV   80 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHH-TTCSEEEECC
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhh-hhhhheeccc
Confidence            478999999 4 68999999999999999998876531     111    122223  34677888888 8999999754


Q ss_pred             C
Q 044593           97 S   97 (335)
Q Consensus        97 p   97 (335)
                      -
T Consensus        81 ~   81 (161)
T d1vlva2          81 W   81 (161)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.23  Score=40.64  Aligned_cols=29  Identities=34%  Similarity=0.425  Sum_probs=26.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVH   60 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~   60 (335)
                      |||+|+|.+.+|..+...|.+.|++|.++
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V   29 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGV   29 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCCcEEEE
Confidence            89999999999999999999999998654

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.71  E-value=0.36  Score=40.64  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=28.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHH-cCCeEEEE-cCC
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFAR-HHHTLLVH-SRS   63 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~-~G~~V~~~-dr~   63 (335)
                      .+.++|+|-|+|++|..+|+.|.+ .|..|+.+ |.+
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~   66 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSK   66 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccc
Confidence            468899999999999999999975 58877544 543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.68  E-value=0.11  Score=44.66  Aligned_cols=33  Identities=15%  Similarity=0.208  Sum_probs=30.6

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      -|.|||.|..|.+.|..+++.|.+|+++++.+.
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~   50 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV   50 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            499999999999999999999999999998763

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=90.66  E-value=0.12  Score=45.68  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=27.2

Q ss_pred             eEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           33 KIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        33 kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      ++.|.| .|.+|+.++..|.+.|++|+++||..
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            344778 79999999999999999999999864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.61  E-value=0.13  Score=42.46  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=29.0

Q ss_pred             eEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           33 KIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        33 kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      ++.|.| .+.||.++|+.|.+.|++|++.||+++.
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            445557 6999999999999999999999998754

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.56  E-value=0.82  Score=36.36  Aligned_cols=47  Identities=13%  Similarity=0.101  Sum_probs=34.3

Q ss_pred             CCCeEEEE--cccHHHHHHHHHHHHcCCeEEEEcCCCCcH----HHHHhCCCc
Q 044593           30 TSLKIAVI--GFGNFGQFLAKAFARHHHTLLVHSRSDHSP----AVRQQLNAP   76 (335)
Q Consensus        30 ~~~kI~II--G~G~mG~siA~~L~~~G~~V~~~dr~~~~~----~~a~~~g~~   76 (335)
                      .+.++.|+  |.|.+|.+.....+..|.+|++..++++..    +.++++|..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad   80 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT   80 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc
Confidence            35678888  579999999888888999998876665432    334556653

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.54  E-value=0.11  Score=41.67  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=30.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      ..+|.|||.|..|.+-|..+++.|.+|+++|+..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            4689999999999999999999999999998654

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.33  E-value=0.26  Score=40.02  Aligned_cols=48  Identities=19%  Similarity=0.296  Sum_probs=37.2

Q ss_pred             CCCCeEEEEcc-cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecC
Q 044593           29 STSLKIAVIGF-GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        29 ~~~~kI~IIG~-G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      ++.||||||-+ |++ .++.++|.+.|+++..++.                  ++++  .++|.+|++=.
T Consensus         4 ~~~mkIgii~~~Gn~-~s~~~al~~~G~~~~~v~~------------------~~~l--~~~D~lIlPGG   52 (202)
T d1q7ra_           4 QSNMKIGVLGLQGAV-REHVRAIEACGAEAVIVKK------------------SEQL--EGLDGLVLPGG   52 (202)
T ss_dssp             CCCCEEEEESCGGGC-HHHHHHHHHTTCEEEEECS------------------GGGG--TTCSEEEECCC
T ss_pred             ccCCEEEEEECCCCH-HHHHHHHHHCCCcEEEECC------------------HHHH--hcCCEEEECCC
Confidence            57899999998 988 6678999999998877641                  2333  67999999653

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=90.33  E-value=0.26  Score=38.36  Aligned_cols=66  Identities=21%  Similarity=0.135  Sum_probs=49.1

Q ss_pred             CCCeEEEEcc---cHHHHHHHHHHHHcCCeEEEEcCCCC-----cHHHHHhCCC--ceecChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGF---GNFGQFLAKAFARHHHTLLVHSRSDH-----SPAVRQQLNA--PFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~---G~mG~siA~~L~~~G~~V~~~dr~~~-----~~~~a~~~g~--~~~~~~~~~~~~~aDvVIlav   96 (335)
                      .+.||++||=   +++..|++..+...|++++++.+..-     ....+.+.+.  ..+.++++++ +++|+|..-.
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av-~~aDvvy~~~   78 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVI-GKLDVLYVTR   78 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHH-TTCSEEEECC
T ss_pred             CCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhh-ccCcEEEeec
Confidence            4679999994   89999999999999999988876531     1233444444  3567888888 8999877644

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.24  E-value=0.14  Score=41.78  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=30.2

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      -|.|||.|.-|.+.|..+++.|++|.++|+.+.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            389999999999999999999999999997654

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.17  E-value=0.34  Score=39.54  Aligned_cols=29  Identities=14%  Similarity=0.195  Sum_probs=26.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEE
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVH   60 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~   60 (335)
                      |||.++|.+.+|..+..+|.++|++|.++
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~V   29 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGYEISAI   29 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCCCEEEE
Confidence            89999999999999999999999998654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.17  E-value=0.13  Score=41.71  Aligned_cols=32  Identities=19%  Similarity=0.121  Sum_probs=29.7

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      |.|||.|..|.+.|..+++.|.+|+++++++.
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~   37 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA   37 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            88999999999999999999999999998653

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.16  E-value=0.23  Score=39.12  Aligned_cols=65  Identities=15%  Similarity=0.128  Sum_probs=47.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCC-----CcHHHHHhC------CCceecChhhHhhcCCCEEEEe
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSD-----HSPAVRQQL------NAPFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~-----~~~~~a~~~------g~~~~~~~~~~~~~~aDvVIla   95 (335)
                      .+.||++|| ..++..|++..+...|.+++++.+..     +..+.+.+.      .+..+.+..+++ .++|+|+.-
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~-~~adviy~~   79 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAV-KDADVIYTD   79 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHT-TTCSEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHh-hhccEEeec
Confidence            578999999 67899999999999999999887652     112222221      224567888887 899988864

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.94  E-value=0.29  Score=39.37  Aligned_cols=66  Identities=15%  Similarity=0.092  Sum_probs=48.9

Q ss_pred             CCCeEEEEc-c-cHHHHHHHHHHHHcCCeEEEEcCCC-----CcHHHHH----hCC--CceecChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIG-F-GNFGQFLAKAFARHHHTLLVHSRSD-----HSPAVRQ----QLN--APFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG-~-G~mG~siA~~L~~~G~~V~~~dr~~-----~~~~~a~----~~g--~~~~~~~~~~~~~~aDvVIlav   96 (335)
                      ++.||++|| . -++..|++..+...|+++.++.+..     +..+.+.    ..|  +..+.++.+++ +++|+|..-+
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai-~~aDvVyt~~   82 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAV-KGVDFVHTDV   82 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHT-TTCSEEEECC
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhcc-ccccEEEeeh
Confidence            567999999 4 5899999999999999999988742     1222222    223  34677888888 8999987644

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.90  E-value=0.11  Score=43.39  Aligned_cols=92  Identities=11%  Similarity=0.105  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh----CCCc--e-ecChhhHh-hcCCCEEEEec----
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ----LNAP--F-FADLNDLC-ELHPDVVLLST----   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~----~g~~--~-~~~~~~~~-~~~aDvVIlav----   96 (335)
                      ....+|.=||||.  +.++..|++.|.+|+++|.++..++.|++    .|..  . ..|..++. .+..|+|+...    
T Consensus        36 ~~~~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          36 LVFDDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             CCTTEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred             CCCCeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence            3457899999983  34677888889999999999887655543    3432  2 22333321 14679888531    


Q ss_pred             ---CchhHHHHHhhccccccCCcc-EEEEcC
Q 044593           97 ---SILSTQSVLKSIPFQRLKRST-LFVDVL  123 (335)
Q Consensus        97 ---p~~~~~~vl~~l~~~~l~~~~-iVvd~~  123 (335)
                         .......+++.+. ..|+||. +|+|+.
T Consensus       114 ~~~~~~~~~~~l~~~~-~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         114 YIIDSDDLKKYFKAVS-NHLKEGGVFIFDIN  143 (246)
T ss_dssp             GCCSHHHHHHHHHHHH-TTEEEEEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHH-HhCCCCeEEEEEeC
Confidence               1223456777774 5677764 566764

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=89.78  E-value=0.55  Score=36.37  Aligned_cols=65  Identities=15%  Similarity=0.165  Sum_probs=45.8

Q ss_pred             CCCeEEEEcc---cHHHHHHHHHHHHcCCeEEEEcCCC---CcHHHHHhCCC--ceecChhhHhhcCCCEEEEe
Q 044593           30 TSLKIAVIGF---GNFGQFLAKAFARHHHTLLVHSRSD---HSPAVRQQLNA--PFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        30 ~~~kI~IIG~---G~mG~siA~~L~~~G~~V~~~dr~~---~~~~~a~~~g~--~~~~~~~~~~~~~aDvVIla   95 (335)
                      .+.||++||=   |++..|++..+...|.+++.+.+.+   .......+.|.  ..++++.+++ +++|+|..-
T Consensus         2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai-~~aDvvy~~   74 (153)
T d1pg5a2           2 DGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVI-NEVDVLYVT   74 (153)
T ss_dssp             TTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTG-GGCSEEEEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHh-hcCCeEEEe
Confidence            4689999993   5699999999999999876554332   12233333443  4567888887 899988753

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.73  E-value=0.1  Score=42.48  Aligned_cols=91  Identities=15%  Similarity=0.113  Sum_probs=56.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh----CCCc---eecChhhHh--hcCCCEEEEecC---
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ----LNAP---FFADLNDLC--ELHPDVVLLSTS---   97 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~----~g~~---~~~~~~~~~--~~~aDvVIlavp---   97 (335)
                      ...||.=||||.  +.++..|++.|.+|+++|.+++.++.+++    .+..   ...+..++.  ....|+|+..--   
T Consensus        37 ~~~~ILDiGcG~--G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~  114 (226)
T d1ve3a1          37 KRGKVLDLACGV--GGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  114 (226)
T ss_dssp             SCCEEEEETCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCc--chhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence            346899999987  33556778889999999999887655543    3332   112222221  135788876432   


Q ss_pred             --chhHHHHHhhccccccCCcc-EEEEcC
Q 044593           98 --ILSTQSVLKSIPFQRLKRST-LFVDVL  123 (335)
Q Consensus        98 --~~~~~~vl~~l~~~~l~~~~-iVvd~~  123 (335)
                        ......+++++. ..++||. ++++..
T Consensus       115 ~~~~d~~~~l~~i~-~~LkpgG~lii~~~  142 (226)
T d1ve3a1         115 FEPLELNQVFKEVR-RVLKPSGKFIMYFT  142 (226)
T ss_dssp             CCHHHHHHHHHHHH-HHEEEEEEEEEEEE
T ss_pred             CChhHHHHHHHHHH-HHcCcCcEEEEEEc
Confidence              223556777774 5677775 455544

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.73  E-value=0.2  Score=37.05  Aligned_cols=36  Identities=14%  Similarity=0.168  Sum_probs=29.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc---CCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH---HHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~---G~~V~~~dr~~~   65 (335)
                      ...+|.|||.|.+|.-+|..|.+.   |.+|+++++.+.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            357999999999999999777654   458999988654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.64  E-value=0.15  Score=41.61  Aligned_cols=33  Identities=15%  Similarity=0.069  Sum_probs=30.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      -.|.|||.|..|...|..+++.|.+|.++++++
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            458999999999999999999999999999764

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=89.62  E-value=0.51  Score=39.35  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=29.8

Q ss_pred             CeEE-EEc-ccHHHHHHHHHHHHcCCe-------EEEEcCCCCcHH
Q 044593           32 LKIA-VIG-FGNFGQFLAKAFARHHHT-------LLVHSRSDHSPA   68 (335)
Q Consensus        32 ~kI~-IIG-~G~mG~siA~~L~~~G~~-------V~~~dr~~~~~~   68 (335)
                      ++|. |.| .+.||.++|+.|.+.|++       |++++|+++..+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~   46 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLE   46 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHH
Confidence            4655 447 588999999999999986       889999976554

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=89.61  E-value=0.14  Score=43.57  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=30.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHH-cCCeEEEEcCCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFAR-HHHTLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~-~G~~V~~~dr~~~   65 (335)
                      .-|.|||.|.-|.+.|..|++ .|++|+++|+.+.
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            349999999999999999987 5999999998864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.55  E-value=0.085  Score=38.62  Aligned_cols=35  Identities=11%  Similarity=0.065  Sum_probs=28.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      ++++|+|||.|.-|.-+|..|.+.+.+++...+..
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            57899999999999999999988776655444443

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=89.53  E-value=0.078  Score=42.07  Aligned_cols=46  Identities=7%  Similarity=-0.124  Sum_probs=36.3

Q ss_pred             cccCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh
Q 044593           25 QYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ   72 (335)
Q Consensus        25 ~~~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~   72 (335)
                      ++....+.||..||||.=  ..+..|++.|++|+++|.++..++.+++
T Consensus        15 ~l~~~~~~rvLd~GCG~G--~~a~~la~~G~~V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          15 SLNVVPGARVLVPLCGKS--QDMSWLSGQGYHVVGAELSEAAVERYFT   60 (201)
T ss_dssp             HHCCCTTCEEEETTTCCS--HHHHHHHHHCCEEEEEEECHHHHHHHHH
T ss_pred             HcCCCCCCEEEEecCcCC--HHHHHHHHcCCceEeecccHHHHHHHHH
Confidence            344557889999999873  3666788889999999999987776654

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=89.39  E-value=0.049  Score=47.52  Aligned_cols=31  Identities=16%  Similarity=0.349  Sum_probs=26.4

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHHcCCe------EEEEcC
Q 044593           32 LKIAVIG-FGNFGQFLAKAFARHHHT------LLVHSR   62 (335)
Q Consensus        32 ~kI~IIG-~G~mG~siA~~L~~~G~~------V~~~dr   62 (335)
                      |||.|.| .|.+|+.++..|.+.|++      |.++|.
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~   38 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS   38 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeC
Confidence            7999998 799999999999999874      555654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.28  E-value=0.18  Score=41.40  Aligned_cols=32  Identities=25%  Similarity=0.164  Sum_probs=30.0

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      |.|||.|.-|.+.|..+++.|++|.++++++.
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            88999999999999999999999999998764

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.25  E-value=0.28  Score=35.93  Aligned_cols=66  Identities=5%  Similarity=0.024  Sum_probs=46.6

Q ss_pred             CCeEEEEcc----------cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCch
Q 044593           31 SLKIAVIGF----------GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSIL   99 (335)
Q Consensus        31 ~~kI~IIG~----------G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~   99 (335)
                      .++|||.|+          ..-.--+...|.+.|.+|.+||+--...+  ...+.....++.++. ..+|+||+.+...
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~--~~~~~~~~~~l~~~~-~~sDiII~~~~~~   90 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE--SEDQSVLVNDLENFK-KQANIIVTNRYDN   90 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC--TTCCSEECCCHHHHH-HHCSEEECSSCCG
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH--hccCCEEEeCHHHHH-hhCCEEEEcCCch
Confidence            358999996          23456688899999999999998754321  123455667888877 7899877665544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=89.22  E-value=0.2  Score=41.20  Aligned_cols=90  Identities=11%  Similarity=0.099  Sum_probs=55.0

Q ss_pred             CCCeEEEEccc--HHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC----CCc--e---ecChhhHhhcCCCEEEEec--
Q 044593           30 TSLKIAVIGFG--NFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL----NAP--F---FADLNDLCELHPDVVLLST--   96 (335)
Q Consensus        30 ~~~kI~IIG~G--~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~----g~~--~---~~~~~~~~~~~aDvVIlav--   96 (335)
                      ...+|.=+|||  .+...+++.+...|.+|+++|.++.-++.|++.    +..  .   ..+..+.....+|+|+...  
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l  118 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  118 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence            45689999985  444445555555678999999999877666542    221  1   1222222114567766542  


Q ss_pred             ---CchhHHHHHhhccccccCCccEEE
Q 044593           97 ---SILSTQSVLKSIPFQRLKRSTLFV  120 (335)
Q Consensus        97 ---p~~~~~~vl~~l~~~~l~~~~iVv  120 (335)
                         +......+++++. ..|+||..++
T Consensus       119 ~~~~~~d~~~~l~~i~-~~LkpgG~li  144 (225)
T d1im8a_         119 QFLPPEDRIALLTKIY-EGLNPNGVLV  144 (225)
T ss_dssp             GGSCGGGHHHHHHHHH-HHEEEEEEEE
T ss_pred             cccChhhHHHHHHHHH-HhCCCCceee
Confidence               3445667888884 5688877554

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.12  E-value=0.17  Score=44.06  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=29.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      ++.+.|.| .+.||..+|..|.+.|++|++.|++.+
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            55566668 688999999999999999999998754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.08  E-value=0.089  Score=41.79  Aligned_cols=29  Identities=14%  Similarity=0.143  Sum_probs=24.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcCCeEEE
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHHHTLLV   59 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G~~V~~   59 (335)
                      ..+|.|||.|.+|-.+|..|++.|.++.+
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i   31 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLI   31 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEE
Confidence            34699999999999999999999976443

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=89.05  E-value=0.35  Score=41.02  Aligned_cols=81  Identities=11%  Similarity=0.004  Sum_probs=50.0

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEecCchhHHHHHhhc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSI  108 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIlavp~~~~~~vl~~l  108 (335)
                      ..++||++||.-    -+...+++.|++++++|+++..       |.......++++ .+||+||++- ..-+...++.|
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~-------gd~p~~~~~~lL-p~aD~viiTG-sTlvN~Tl~~L  186 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE-------GDYPLPASEFIL-PECDYVYITC-ASVVDKTLPRL  186 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT-------TCEEGGGHHHHG-GGCSEEEEET-HHHHHTCHHHH
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHhh-hcCCEEEEEe-chhhcCCHHHH
Confidence            457899999864    3555678889999999999752       222223345566 7899999853 23334444444


Q ss_pred             cccccCCccEEEEcC
Q 044593          109 PFQRLKRSTLFVDVL  123 (335)
Q Consensus       109 ~~~~l~~~~iVvd~~  123 (335)
                      . ...++...|+-++
T Consensus       187 L-~~~~~a~~vvl~G  200 (251)
T d2h1qa1         187 L-ELSRNARRITLVG  200 (251)
T ss_dssp             H-HHTTTSSEEEEES
T ss_pred             H-HhCCcCCEEEEEC
Confidence            2 2344554554444

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=88.93  E-value=0.16  Score=43.98  Aligned_cols=33  Identities=15%  Similarity=0.216  Sum_probs=30.6

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      -|.|||.|.-|.+.|..++++|++|+++++.+.
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~   57 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI   57 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            499999999999999999999999999998763

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.92  E-value=0.3  Score=41.23  Aligned_cols=39  Identities=13%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSP   67 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~   67 (335)
                      .+++.|.|.| .+.||..+|+.|.+.|++|++.+|+.+..
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~   42 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP   42 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH
Confidence            4577788888 57899999999999999988776665544

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.81  E-value=0.21  Score=43.76  Aligned_cols=31  Identities=16%  Similarity=0.192  Sum_probs=27.9

Q ss_pred             eEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCC
Q 044593           33 KIAVIG-FGNFGQFLAKAFARHHHTLLVHSRS   63 (335)
Q Consensus        33 kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~   63 (335)
                      .|.|.| .|-+|+.++..|.++|++|+++|+.
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~   34 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGYDCVVADNL   34 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCeEEEEECC
Confidence            477888 7999999999999999999999864

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=0.27  Score=37.40  Aligned_cols=35  Identities=23%  Similarity=0.188  Sum_probs=29.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHH----HcCCeEEEEcCCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFA----RHHHTLLVHSRSDH   65 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~----~~G~~V~~~dr~~~   65 (335)
                      ..+|.|||.|.+|.-+|..|.    +.|.+|+++++++.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            568999999999998888885    45889999988654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.77  E-value=0.21  Score=40.04  Aligned_cols=89  Identities=9%  Similarity=0.036  Sum_probs=53.5

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHHcCCe-EEEEcCCCC-cHHHHHhCCCcee-----cChhhHh----hcCCCEEEEecCc
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFARHHHT-LLVHSRSDH-SPAVRQQLNAPFF-----ADLNDLC----ELHPDVVLLSTSI   98 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~~~G~~-V~~~dr~~~-~~~~a~~~g~~~~-----~~~~~~~----~~~aDvVIlavp~   98 (335)
                      ...|.|.| .|.+|....+..+..|.+ |++.+.+++ ..+.+.+.|....     .+..+.+    .+.+|+|+-++-.
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg  110 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGG  110 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCCc
Confidence            46799998 699999999998889975 555565544 3445556776421     1222221    1357888877765


Q ss_pred             hhHHHHHhhccccccCCccEEEEcCC
Q 044593           99 LSTQSVLKSIPFQRLKRSTLFVDVLS  124 (335)
Q Consensus        99 ~~~~~vl~~l~~~~l~~~~iVvd~~S  124 (335)
                      ......++.     ++++..++.++.
T Consensus       111 ~~~~~~~~~-----l~~~G~iv~~G~  131 (187)
T d1vj1a2         111 DISNTVISQ-----MNENSHIILCGQ  131 (187)
T ss_dssp             HHHHHHHTT-----EEEEEEEEEC--
T ss_pred             hhHHHHhhh-----ccccccEEEecc
Confidence            444444433     345556666654

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=88.74  E-value=0.24  Score=38.61  Aligned_cols=62  Identities=16%  Similarity=0.243  Sum_probs=46.5

Q ss_pred             CCCeEEEEcc---cHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhCCCceecChhhHhhcCCCEEEEe
Q 044593           30 TSLKIAVIGF---GNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLS   95 (335)
Q Consensus        30 ~~~kI~IIG~---G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~aDvVIla   95 (335)
                      .+.||++||=   ++++.|++..+...|+++.++.+..-..   .+..+..+.++++++ +++|+|..-
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~---~~~~~~~~~~~~ea~-~~aDviy~~   66 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD---EENTFGTYVSMDEAV-ESSDVVMLL   66 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhc---cccceeEEEechhcc-ccCceeeee
Confidence            3689999993   6899999999999999998887653211   122445667778887 899988764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.59  E-value=0.2  Score=41.02  Aligned_cols=31  Identities=26%  Similarity=0.282  Sum_probs=29.1

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      |.|||.|.-|.+.|..+++.|++|.+++..+
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7899999999999999999999999999664

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.46  E-value=0.21  Score=39.16  Aligned_cols=32  Identities=19%  Similarity=0.094  Sum_probs=28.9

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      -|.|||.|..|.+.|..+.+.|.+|.++++..
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEec
Confidence            37899999999999999999999999998653

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.28  E-value=0.16  Score=43.58  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=32.3

Q ss_pred             CCCCeEEEEccc---HHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           29 STSLKIAVIGFG---NFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        29 ~~~~kI~IIG~G---~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      .+++++.|.|++   -||..+|+.|++.|.+|++.+|++.
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            567888899975   5999999999999999999998764

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.95  E-value=0.25  Score=39.97  Aligned_cols=31  Identities=26%  Similarity=0.107  Sum_probs=28.9

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      +.|||.|..|.+.|..+++.|.+|.+++++.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            7899999999999999999999999998764

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=87.89  E-value=0.24  Score=43.20  Aligned_cols=29  Identities=14%  Similarity=0.277  Sum_probs=27.7

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcC
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSR   62 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr   62 (335)
                      |.|||.|.-|..+|..|+++|++|.+.++
T Consensus         7 viIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           7 VVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            78999999999999999999999999976

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.71  E-value=0.26  Score=39.69  Aligned_cols=32  Identities=19%  Similarity=0.219  Sum_probs=29.5

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      -|.|||.|..|.+.|..+++.|.+|.++++..
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            37899999999999999999999999998764

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.64  E-value=0.073  Score=44.92  Aligned_cols=32  Identities=19%  Similarity=0.358  Sum_probs=27.6

Q ss_pred             EEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCc
Q 044593           35 AVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHS   66 (335)
Q Consensus        35 ~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~   66 (335)
                      .|-| .+.||.++|+.|.+.|++|++.+|+.+.
T Consensus         5 lVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~   37 (266)
T d1mxha_           5 VITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG   37 (266)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             EEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            3446 6889999999999999999999998754

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.60  E-value=0.23  Score=41.89  Aligned_cols=38  Identities=32%  Similarity=0.461  Sum_probs=31.3

Q ss_pred             CCeEEEE-c-ccHHHHHHHHHHHH---cCCeEEEEcCCCCcHH
Q 044593           31 SLKIAVI-G-FGNFGQFLAKAFAR---HHHTLLVHSRSDHSPA   68 (335)
Q Consensus        31 ~~kI~II-G-~G~mG~siA~~L~~---~G~~V~~~dr~~~~~~   68 (335)
                      ..||+|| | .+.||.++|+.|++   .|++|++++|+++..+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~   47 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLR   47 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHH
Confidence            3477777 7 57899999999986   6999999999976654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.35  E-value=0.44  Score=37.94  Aligned_cols=93  Identities=15%  Similarity=0.117  Sum_probs=60.6

Q ss_pred             cccCCCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH----hCCCc----e-ecChhhHh--hcCCCEEE
Q 044593           25 QYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ----QLNAP----F-FADLNDLC--ELHPDVVL   93 (335)
Q Consensus        25 ~~~~~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~----~~g~~----~-~~~~~~~~--~~~aDvVI   93 (335)
                      .+....+.+|.=||+|.=+.+++  +++.+.+|+++|.+++.++.++    +.|+.    . ..+..+..  ...+|+|+
T Consensus        28 ~l~~~~g~~VLDiGcGsG~~s~~--lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~  105 (186)
T d1l3ia_          28 LAEPGKNDVAVDVGCGTGGVTLE--LAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAV  105 (186)
T ss_dssp             HHCCCTTCEEEEESCTTSHHHHH--HHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEE
T ss_pred             hcCCCCCCEEEEEECCeEccccc--ccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEE
Confidence            34455688999999876444443  4455679999999988765544    34542    1 23333332  15789999


Q ss_pred             EecCchhHHHHHhhccccccCCccEEE
Q 044593           94 LSTSILSTQSVLKSIPFQRLKRSTLFV  120 (335)
Q Consensus        94 lavp~~~~~~vl~~l~~~~l~~~~iVv  120 (335)
                      +.-+.....++++.+. ..++++..++
T Consensus       106 ~~~~~~~~~~~~~~~~-~~LkpgG~lv  131 (186)
T d1l3ia_         106 VGGSGGELQEILRIIK-DKLKPGGRII  131 (186)
T ss_dssp             ESCCTTCHHHHHHHHH-HTEEEEEEEE
T ss_pred             EeCccccchHHHHHHH-HHhCcCCEEE
Confidence            8877777778887774 5677776443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.88  E-value=0.3  Score=41.25  Aligned_cols=38  Identities=16%  Similarity=0.180  Sum_probs=29.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEc-CCCCcH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHS-RSDHSP   67 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~d-r~~~~~   67 (335)
                      .++.+.|.| .+.||..+|..|.+.|++|++.+ ++++..
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~   44 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAA   44 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHH
Confidence            466777777 68899999999999999998754 444433

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.88  E-value=0.27  Score=41.13  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHH---HcCCeEEEEcCCCCcHH
Q 044593           31 SLKIAVIG-FGNFGQFLAKAFA---RHHHTLLVHSRSDHSPA   68 (335)
Q Consensus        31 ~~kI~IIG-~G~mG~siA~~L~---~~G~~V~~~dr~~~~~~   68 (335)
                      |++|.|.| .+.||..+|+.|.   +.|++|++.+|+++..+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~   43 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK   43 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            45698999 5899999999986   46899999999987654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=86.75  E-value=0.27  Score=43.21  Aligned_cols=29  Identities=21%  Similarity=0.102  Sum_probs=27.7

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcC
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSR   62 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr   62 (335)
                      |.|||.|.-|..+|..|.++|++|.+.++
T Consensus         5 VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           5 AVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            78999999999999999999999999987

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.70  E-value=0.33  Score=40.58  Aligned_cols=40  Identities=13%  Similarity=0.237  Sum_probs=32.4

Q ss_pred             CCCCeEEEEc-ccHHHHHHHHHHHHcCC--eEEEEcCCCCcHH
Q 044593           29 STSLKIAVIG-FGNFGQFLAKAFARHHH--TLLVHSRSDHSPA   68 (335)
Q Consensus        29 ~~~~kI~IIG-~G~mG~siA~~L~~~G~--~V~~~dr~~~~~~   68 (335)
                      |+.+.|.|.| .+.||..+|+.|.+.|+  .|++.+|+.+..+
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~   43 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT   43 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHH
Confidence            3456788888 69999999999999995  6888899876554

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=86.64  E-value=0.25  Score=40.29  Aligned_cols=36  Identities=22%  Similarity=0.227  Sum_probs=28.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCC---eEEEEcCCCCcH
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHH---TLLVHSRSDHSP   67 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~---~V~~~dr~~~~~   67 (335)
                      +||.|||.|.-|..++..|.+.|.   +.+.+|.|...+
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L   39 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVL   39 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHH
Confidence            689999999999999999998775   456666654433

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=86.63  E-value=0.19  Score=41.12  Aligned_cols=87  Identities=14%  Similarity=0.177  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH----hCCCc---e-ecChhhH--hhcCCCEEEEecCc
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQ----QLNAP---F-FADLNDL--CELHPDVVLLSTSI   98 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~----~~g~~---~-~~~~~~~--~~~~aDvVIlavp~   98 (335)
                      ...++|.=||||. | .++..+.+.|.+|+++|.+++.++.|+    +.+..   + ..+..++  .....|+|+..--.
T Consensus        14 ~~~~rVLDiGcG~-G-~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l   91 (231)
T d1vl5a_          14 KGNEEVLDVATGG-G-HVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA   91 (231)
T ss_dssp             CSCCEEEEETCTT-C-HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred             CCcCEEEEecccC-c-HHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccccc
Confidence            4568999999993 3 445667788999999999987665443    23332   1 1222222  11457988865322


Q ss_pred             h---hHHHHHhhccccccCCccE
Q 044593           99 L---STQSVLKSIPFQRLKRSTL  118 (335)
Q Consensus        99 ~---~~~~vl~~l~~~~l~~~~i  118 (335)
                      .   ....+++++. ..++||..
T Consensus        92 ~~~~d~~~~l~~~~-r~LkpgG~  113 (231)
T d1vl5a_          92 HHFPNPASFVSEAY-RVLKKGGQ  113 (231)
T ss_dssp             GGCSCHHHHHHHHH-HHEEEEEE
T ss_pred             cccCCHHHHHHHHH-HhcCCCcE
Confidence            2   2456677764 56777763

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.26  E-value=0.3  Score=42.16  Aligned_cols=36  Identities=17%  Similarity=0.210  Sum_probs=31.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc--CCeEEEEcCCCC
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH--HHTLLVHSRSDH   65 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~--G~~V~~~dr~~~   65 (335)
                      ....|.|||.|.-|.+.|..|+++  |++|+++++++.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            345799999999999999999864  899999999864

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.95  E-value=0.31  Score=42.11  Aligned_cols=33  Identities=15%  Similarity=0.251  Sum_probs=30.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      .-|.|||.|..|.+.|..+++.|.+|+++++.+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            359999999999999999999999999999875

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.93  E-value=0.36  Score=43.29  Aligned_cols=33  Identities=15%  Similarity=0.328  Sum_probs=30.0

Q ss_pred             eEEEEcccHHHHHHHHHHHH------cCCeEEEEcCCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFAR------HHHTLLVHSRSDH   65 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~------~G~~V~~~dr~~~   65 (335)
                      -|.|||.|.-|.+.|..|++      +|++|.++++...
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            59999999999999999987      7999999998754

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=85.80  E-value=0.42  Score=39.14  Aligned_cols=93  Identities=14%  Similarity=0.133  Sum_probs=56.2

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHhC---CCcee-cChhhHh-hcCCCEEEEecCchh---
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQL---NAPFF-ADLNDLC-ELHPDVVLLSTSILS---  100 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~~---g~~~~-~~~~~~~-~~~aDvVIlavp~~~---  100 (335)
                      .+..+|.=||+|.  +.++..|++.|.+|+++|.+++..+.+++.   ++... .+..+.. ....|+|+..--...   
T Consensus        19 ~~~~~VLDiGcG~--G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d   96 (225)
T d2p7ia1          19 FRPGNLLELGSFK--GDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD   96 (225)
T ss_dssp             CCSSCEEEESCTT--SHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred             CCCCcEEEEeCCC--cHHHHHHHHcCCeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCC
Confidence            3567899999987  445677888899999999999877766543   33321 2222221 145798886543322   


Q ss_pred             HHHHHhhccccccCCcc-EEEEcC
Q 044593          101 TQSVLKSIPFQRLKRST-LFVDVL  123 (335)
Q Consensus       101 ~~~vl~~l~~~~l~~~~-iVvd~~  123 (335)
                      ...++.++....+++|. +++.+-
T Consensus        97 ~~~~l~~i~~~~Lk~gG~l~i~~p  120 (225)
T d2p7ia1          97 PVALLKRINDDWLAEGGRLFLVCP  120 (225)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCceEEEEeC
Confidence            34555555212356655 455543

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=85.74  E-value=0.31  Score=41.03  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=26.6

Q ss_pred             EEEEc-ccHHHHHHHHHHHHcCC-eEEEEcCCC
Q 044593           34 IAVIG-FGNFGQFLAKAFARHHH-TLLVHSRSD   64 (335)
Q Consensus        34 I~IIG-~G~mG~siA~~L~~~G~-~V~~~dr~~   64 (335)
                      |.|.| +|.||+.++..|.++|+ +|+++|+-.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~   34 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLK   34 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCS
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            67888 79999999999999995 799998443

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.62  E-value=0.24  Score=40.86  Aligned_cols=39  Identities=18%  Similarity=0.200  Sum_probs=30.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHHHHcCC---eEEEEcCCCCcH
Q 044593           29 STSLKIAVIGFGNFGQFLAKAFARHHH---TLLVHSRSDHSP   67 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L~~~G~---~V~~~dr~~~~~   67 (335)
                      ....||.|||.|.-|..++..+.+.|.   +.+.+|.|.+.+
T Consensus        13 ~~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L   54 (209)
T d2vapa1          13 QTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQL   54 (209)
T ss_dssp             TTCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHH
T ss_pred             ccCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHH
Confidence            456899999999999999999999875   445666654433

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.47  E-value=0.35  Score=38.91  Aligned_cols=31  Identities=23%  Similarity=0.140  Sum_probs=29.0

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      |.|||.|.-|.+-|..+++.|.+|.++|+.+
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            8899999999999999999999999999754

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=84.74  E-value=0.39  Score=42.13  Aligned_cols=30  Identities=20%  Similarity=0.114  Sum_probs=28.0

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEEcC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVHSR   62 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~dr   62 (335)
                      -+.|||.|.-|..+|..|.++|++|++.++
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            478999999999999999999999999986

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=84.57  E-value=0.98  Score=36.25  Aligned_cols=76  Identities=14%  Similarity=0.131  Sum_probs=48.2

Q ss_pred             CCeEEEE-----c-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHh-----------CCCceecChhhHhhcCCCEEE
Q 044593           31 SLKIAVI-----G-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQ-----------LNAPFFADLNDLCELHPDVVL   93 (335)
Q Consensus        31 ~~kI~II-----G-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~g~~~~~~~~~~~~~~aDvVI   93 (335)
                      .|||.||     | .-.|...++..+.+.|++|.+++..+........           ..-......+++  .++|.||
T Consensus         2 ~mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i--~~aD~ii   79 (201)
T d1ydga_           2 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADL--EWAEAIV   79 (201)
T ss_dssp             CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHH--HHCSEEE
T ss_pred             CcEEEEEEeCCCcHHHHHHHHHHHHHHhcCCEEEEEEccccCccchhhhhhHhhcCCCcccCchhhhhhhH--hhCCEeE
Confidence            5899988     3 3467888999999999999888766532211111           010111223444  6799999


Q ss_pred             EecCchh------HHHHHhhc
Q 044593           94 LSTSILS------TQSVLKSI  108 (335)
Q Consensus        94 lavp~~~------~~~vl~~l  108 (335)
                      +++|...      +..+++.+
T Consensus        80 ~gsPvy~~~~s~~~k~flDr~  100 (201)
T d1ydga_          80 FSSPTRFGGATSQMRAFIDTL  100 (201)
T ss_dssp             EEEEEETTEECHHHHHHHHTT
T ss_pred             EecceeeeeccchhHHHHHHh
Confidence            9999763      55666543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.97  E-value=0.49  Score=39.52  Aligned_cols=31  Identities=32%  Similarity=0.390  Sum_probs=29.0

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      +.|||.|.-|...|..+++.|.+|.+++++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            7899999999999999999999999999864

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.58  E-value=2.5  Score=34.92  Aligned_cols=34  Identities=21%  Similarity=0.369  Sum_probs=26.4

Q ss_pred             EEEE-c-ccHHHHHHHHHHHHcCCeEEEEcC-CCCcH
Q 044593           34 IAVI-G-FGNFGQFLAKAFARHHHTLLVHSR-SDHSP   67 (335)
Q Consensus        34 I~II-G-~G~mG~siA~~L~~~G~~V~~~dr-~~~~~   67 (335)
                      |.+| | .+.||..+|+.|.+.|++|++.++ +++..
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~   39 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAA   39 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence            5545 6 799999999999999999988654 44433

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=83.36  E-value=0.54  Score=37.44  Aligned_cols=32  Identities=25%  Similarity=0.523  Sum_probs=24.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC---CeEEEE-cCC
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH---HTLLVH-SRS   63 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G---~~V~~~-dr~   63 (335)
                      |||||=|+|+||..+.+.+.+..   .+|+.+ |+.
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~   36 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG   36 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCC
Confidence            69999999999999999887643   455554 443

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=83.26  E-value=0.49  Score=40.72  Aligned_cols=31  Identities=29%  Similarity=0.101  Sum_probs=29.4

Q ss_pred             EEEEcccHHHHHHHHHHHHcCCeEEEEcCCC
Q 044593           34 IAVIGFGNFGQFLAKAFARHHHTLLVHSRSD   64 (335)
Q Consensus        34 I~IIG~G~mG~siA~~L~~~G~~V~~~dr~~   64 (335)
                      |.|||.|.-|.+-|..++++|.+|+++++.+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            8999999999999999999999999999875

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.15  E-value=1.6  Score=37.07  Aligned_cols=91  Identities=10%  Similarity=0.069  Sum_probs=56.2

Q ss_pred             cccCCCCCeEEEEcccHHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHH----hCCCc-----eecChhhHhhcCCCEEEE
Q 044593           25 QYVKSTSLKIAVIGFGNFGQFLAKAF-ARHHHTLLVHSRSDHSPAVRQ----QLNAP-----FFADLNDLCELHPDVVLL   94 (335)
Q Consensus        25 ~~~~~~~~kI~IIG~G~mG~siA~~L-~~~G~~V~~~dr~~~~~~~a~----~~g~~-----~~~~~~~~~~~~aDvVIl   94 (335)
                      .+....+++|.=||||.=|.  +..+ ...|.+|++++.+++..+.++    +.|..     ...+..+.. ...|.|+.
T Consensus        47 ~l~l~~g~~VLDiGCG~G~~--a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~-~~fD~i~s  123 (280)
T d2fk8a1          47 KLDLKPGMTLLDIGCGWGTT--MRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-EPVDRIVS  123 (280)
T ss_dssp             TSCCCTTCEEEEESCTTSHH--HHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-CCCSEEEE
T ss_pred             HcCCCCCCEEEEecCCchHH--HHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc-cchhhhhH
Confidence            33445688999999997543  3334 445899999999987655443    34542     123444444 56788875


Q ss_pred             ec-----CchhHHHHHhhccccccCCccEE
Q 044593           95 ST-----SILSTQSVLKSIPFQRLKRSTLF  119 (335)
Q Consensus        95 av-----p~~~~~~vl~~l~~~~l~~~~iV  119 (335)
                      .-     +......+++.+. ..|+||..+
T Consensus       124 i~~~eh~~~~~~~~~f~~i~-~~LkpgG~~  152 (280)
T d2fk8a1         124 IEAFEHFGHENYDDFFKRCF-NIMPADGRM  152 (280)
T ss_dssp             ESCGGGTCGGGHHHHHHHHH-HHSCTTCEE
T ss_pred             hhHHHHhhhhhHHHHHHHHH-hccCCCceE
Confidence            43     2233456777774 556666544

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=83.14  E-value=0.5  Score=37.53  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=27.9

Q ss_pred             eEEEEcccHHHHHHHHHHHHcCCeEEEE-cCCCC
Q 044593           33 KIAVIGFGNFGQFLAKAFARHHHTLLVH-SRSDH   65 (335)
Q Consensus        33 kI~IIG~G~mG~siA~~L~~~G~~V~~~-dr~~~   65 (335)
                      ||||=|+|+||..+.+.+.+.+.+|+.+ |...+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~   35 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIA   35 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcC
Confidence            8999999999999999999988887666 54443

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.09  E-value=4.1  Score=30.05  Aligned_cols=76  Identities=14%  Similarity=0.236  Sum_probs=55.9

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEE-EEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecCchhH-HHHH
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLL-VHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTSILST-QSVL  105 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~-~~vl  105 (335)
                      +..||.|-| .|..|+..+....+.|-+|+ ++.+...-.+   -.|+..+++..|+.. .++|.=++.+|+... ..++
T Consensus         6 k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~---~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi~   82 (121)
T d1oi7a1           6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGME---VLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAAL   82 (121)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHH
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcE---EECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHHH
Confidence            355899999 59999999999999998764 5555443221   137778888888752 479999999998875 4455


Q ss_pred             hhc
Q 044593          106 KSI  108 (335)
Q Consensus       106 ~~l  108 (335)
                      +.+
T Consensus        83 EAi   85 (121)
T d1oi7a1          83 EAA   85 (121)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            555

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.32  E-value=0.44  Score=38.88  Aligned_cols=89  Identities=11%  Similarity=0.077  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcccHHHHHHHHHH-HHcCCeEEEEcCCCCcHHHHHhC----CC---ce-ecChhhHh--hcCCCEEEEec-
Q 044593           29 STSLKIAVIGFGNFGQFLAKAF-ARHHHTLLVHSRSDHSPAVRQQL----NA---PF-FADLNDLC--ELHPDVVLLST-   96 (335)
Q Consensus        29 ~~~~kI~IIG~G~mG~siA~~L-~~~G~~V~~~dr~~~~~~~a~~~----g~---~~-~~~~~~~~--~~~aDvVIlav-   96 (335)
                      ....+|.=||+|.=.  ++..| .+.+.+|+++|.+++.++.|++.    +.   .. ..+..++.  ....|+|+..- 
T Consensus        59 ~~~~~vLDiGcG~G~--~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          59 TGTSCALDCGAGIGR--ITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCSEEEEETCTTTH--HHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCEEEEeccCCCH--hhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            345789999998733  33333 44456899999999877666542    22   11 22333321  13468877633 


Q ss_pred             ----CchhHHHHHhhccccccCCccEEE
Q 044593           97 ----SILSTQSVLKSIPFQRLKRSTLFV  120 (335)
Q Consensus        97 ----p~~~~~~vl~~l~~~~l~~~~iVv  120 (335)
                          |.....++++++. ..++++..++
T Consensus       137 l~h~~~~~~~~~l~~i~-~~Lk~~G~~~  163 (222)
T d2ex4a1         137 IGHLTDQHLAEFLRRCK-GSLRPNGIIV  163 (222)
T ss_dssp             GGGSCHHHHHHHHHHHH-HHEEEEEEEE
T ss_pred             cccchhhhhhhHHHHHH-HhcCCcceEE
Confidence                3333456777774 4566665443

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.05  E-value=1  Score=38.96  Aligned_cols=121  Identities=14%  Similarity=0.157  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHc-C-CeEEEEcCCCCcHHHHHhCC-----------Cc-eecChhhHh---hcCCC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARH-H-HTLLVHSRSDHSPAVRQQLN-----------AP-FFADLNDLC---ELHPD   90 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~-G-~~V~~~dr~~~~~~~a~~~g-----------~~-~~~~~~~~~---~~~aD   90 (335)
                      ....++|.|||.|.-|  +++.+.+. + .+|.+++.|++..+.+++.-           +. ...|..+.+   .+..|
T Consensus        87 ~~~pk~VLiiGgG~G~--~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD  164 (295)
T d1inla_          87 HPNPKKVLIIGGGDGG--TLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFD  164 (295)
T ss_dssp             SSSCCEEEEEECTTCH--HHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred             CCCCceEEEecCCchH--HHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCC
Confidence            3567899999998654  35555543 3 47999999998777665521           11 123333333   14689


Q ss_pred             EEEEecCchh--------HHHHHhhccccccCCccEEEE-cCCCC------chHHHHHHhhCCCCCceEeccccCC
Q 044593           91 VVLLSTSILS--------TQSVLKSIPFQRLKRSTLFVD-VLSVK------EFPRNLFLKYLPQDFDILCTHPMFG  151 (335)
Q Consensus        91 vVIlavp~~~--------~~~vl~~l~~~~l~~~~iVvd-~~SvK------~~~~~~l~~~l~~~~~~v~~HPmaG  151 (335)
                      +||+-.+...        ..+.++.+. ..++++.+++- +.|--      ..+.+.+++.++.-..|....|.++
T Consensus       165 vIi~D~~dp~~~~~~~L~t~efy~~~~-~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp  239 (295)
T d1inla_         165 VIIIDSTDPTAGQGGHLFTEEFYQACY-DALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYP  239 (295)
T ss_dssp             EEEEEC----------CCSHHHHHHHH-HHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTST
T ss_pred             EEEEcCCCCCcCchhhhccHHHHHHHH-hhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeeeceec
Confidence            9998553321        356666664 56777766554 44321      1234566666664333445557763

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.00  E-value=0.47  Score=41.05  Aligned_cols=120  Identities=17%  Similarity=0.155  Sum_probs=69.6

Q ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHc-C-CeEEEEcCCCCcHHHHHhCC-----------Cc-eecChhhHh----hcCC
Q 044593           28 KSTSLKIAVIGFGNFGQFLAKAFARH-H-HTLLVHSRSDHSPAVRQQLN-----------AP-FFADLNDLC----ELHP   89 (335)
Q Consensus        28 ~~~~~kI~IIG~G~mG~siA~~L~~~-G-~~V~~~dr~~~~~~~a~~~g-----------~~-~~~~~~~~~----~~~a   89 (335)
                      .....||.|||.|.-|  +++.+.+. + .+|.+++.+++..+.+++.-           +. ...|..+.+    .+..
T Consensus        78 ~~~pk~VLiiGgG~G~--~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~y  155 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGG--VLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY  155 (290)
T ss_dssp             SSCCCEEEEETCSSSH--HHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred             CCCCcceEEecCCchH--HHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCc
Confidence            3467899999998654  44555554 4 37999999998877665521           11 122332222    1368


Q ss_pred             CEEEEecCch-------hHHHHHhhccccccCCccEEE-EcCCCC--c----hHHHHHHhhCCCCCceE-eccccC
Q 044593           90 DVVLLSTSIL-------STQSVLKSIPFQRLKRSTLFV-DVLSVK--E----FPRNLFLKYLPQDFDIL-CTHPMF  150 (335)
Q Consensus        90 DvVIlavp~~-------~~~~vl~~l~~~~l~~~~iVv-d~~SvK--~----~~~~~l~~~l~~~~~~v-~~HPma  150 (335)
                      |+||+=.+..       ...+.++.+. ..++++.+++ .++|.-  .    .+.+.+++.++.-..|. ..-|++
T Consensus       156 DvIi~D~~dp~~~~~~L~t~eF~~~~~-~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty  230 (290)
T d1xj5a_         156 DAVIVDSSDPIGPAKELFEKPFFQSVA-RALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTY  230 (290)
T ss_dssp             EEEEECCCCTTSGGGGGGSHHHHHHHH-HHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTS
T ss_pred             cEEEEcCCCCCCcchhhCCHHHHHHHH-HhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeEeeEeeeee
Confidence            9999854432       1466677774 5677776655 444421  1    24566677776443342 334655

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=81.99  E-value=2  Score=33.91  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=48.1

Q ss_pred             CCCeEEEEcc--cHHHHHHHHHHHHcCCeEEEEcCCC---C--cHH----HHHhCCC--ceecChhhHhhcCCCEEEEec
Q 044593           30 TSLKIAVIGF--GNFGQFLAKAFARHHHTLLVHSRSD---H--SPA----VRQQLNA--PFFADLNDLCELHPDVVLLST   96 (335)
Q Consensus        30 ~~~kI~IIG~--G~mG~siA~~L~~~G~~V~~~dr~~---~--~~~----~a~~~g~--~~~~~~~~~~~~~aDvVIlav   96 (335)
                      .+.||++||=  -++..|++.++...|.+++++.+..   .  ..+    .+...|.  ..+.+.++++ .++|+|..-+
T Consensus         4 ~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~-~~aDvvyt~~   82 (183)
T d1duvg2           4 NEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGV-EGADFIYTDV   82 (183)
T ss_dssp             GGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHH-TTCSEEEECC
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhcc-ccCCEEEEEe
Confidence            4679999994  4799999999999999999887642   1  112    2233444  3567888887 8999988754

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=81.26  E-value=0.5  Score=37.68  Aligned_cols=30  Identities=17%  Similarity=0.434  Sum_probs=24.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHHcC----CeEEEEc
Q 044593           32 LKIAVIGFGNFGQFLAKAFARHH----HTLLVHS   61 (335)
Q Consensus        32 ~kI~IIG~G~mG~siA~~L~~~G----~~V~~~d   61 (335)
                      |||||=|+|+||..+.+.+.+.+    .+|+..+
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN   35 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN   35 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence            69999999999999999987643    3555553

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=81.22  E-value=0.96  Score=37.92  Aligned_cols=34  Identities=15%  Similarity=0.331  Sum_probs=27.8

Q ss_pred             CeEEEE-c-ccHHHHHHHHHHHHcCCeEEEEcCCCC
Q 044593           32 LKIAVI-G-FGNFGQFLAKAFARHHHTLLVHSRSDH   65 (335)
Q Consensus        32 ~kI~II-G-~G~mG~siA~~L~~~G~~V~~~dr~~~   65 (335)
                      |-|+|| | .+.||.++|+.|.+.|++|++.+++.+
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   37 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA   37 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence            347777 6 689999999999999999988776543

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.74  E-value=1.1  Score=38.57  Aligned_cols=117  Identities=9%  Similarity=0.068  Sum_probs=66.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHHc----CC-------eEEEEcCCC----Cc---HH----HHHhCCC-ceecChhhHhh
Q 044593           30 TSLKIAVIGFGNFGQFLAKAFARH----HH-------TLLVHSRSD----HS---PA----VRQQLNA-PFFADLNDLCE   86 (335)
Q Consensus        30 ~~~kI~IIG~G~mG~siA~~L~~~----G~-------~V~~~dr~~----~~---~~----~a~~~g~-~~~~~~~~~~~   86 (335)
                      ...||.|.|+|.-|..+|..+...    |.       +++.+|+.-    ..   ..    ....... ....++.+++ 
T Consensus        24 ~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i-  102 (294)
T d1pj3a1          24 SEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAV-  102 (294)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHH-
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHH-
Confidence            456899999999999999887654    32       588888741    10   11    0000011 1123566654 


Q ss_pred             c--CCCEEEEec-Cch-hHHHHHhhccccccCCccEEEEcCCCCch---HHHHHHhhCCCCCceEecccc
Q 044593           87 L--HPDVVLLST-SIL-STQSVLKSIPFQRLKRSTLFVDVLSVKEF---PRNLFLKYLPQDFDILCTHPM  149 (335)
Q Consensus        87 ~--~aDvVIlav-p~~-~~~~vl~~l~~~~l~~~~iVvd~~SvK~~---~~~~l~~~l~~~~~~v~~HPm  149 (335)
                      +  ++|++|-+. +.. ..+++++.+.  .+.+..+|.-+++--..   ..+...+.-....-|..+-|.
T Consensus       103 ~~~kptvliG~S~~~g~ft~evi~~Ma--~~~~~PIIFaLSNPt~~~e~~~~~a~~~t~grai~asGspf  170 (294)
T d1pj3a1         103 NILKPSTIIGVAGAGRLFTPDVIRAMA--SINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPF  170 (294)
T ss_dssp             HHHCCSEEEECCCSSCCSCHHHHHHHH--HHCSSCEEEECCSSGGGCSCCHHHHHHHTTTCCEEEESSCC
T ss_pred             HhcCCceEEEecCCCCcCCHHHHHHHH--hcCCCcEEEEccCCCCcCCcCHHHHHhhccCceEeecCCcc
Confidence            3  677777655 333 3688888774  25677788887643111   122333333333456666554

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.69  E-value=2.2  Score=33.13  Aligned_cols=68  Identities=15%  Similarity=0.076  Sum_probs=47.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCC-----cHH----HHHhCC--CceecChhhHhhcCCCEEEEecC
Q 044593           30 TSLKIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDH-----SPA----VRQQLN--APFFADLNDLCELHPDVVLLSTS   97 (335)
Q Consensus        30 ~~~kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~-----~~~----~a~~~g--~~~~~~~~~~~~~~aDvVIlavp   97 (335)
                      .+.||++|| .-++-.|++..+...|++++++.+..-     ..+    .+.+.|  +..+.++.+.+ .++|+|+..+-
T Consensus         3 ~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~-~~advi~~~~~   81 (170)
T d1otha2           3 KGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAA-HGGNVLITDTW   81 (170)
T ss_dssp             TTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHH-TTCSEEEECCS
T ss_pred             CCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHH-hhhhheeeece
Confidence            578999999 456778888888888999988876421     111    122223  34677888887 89999998664


Q ss_pred             c
Q 044593           98 I   98 (335)
Q Consensus        98 ~   98 (335)
                      .
T Consensus        82 ~   82 (170)
T d1otha2          82 I   82 (170)
T ss_dssp             S
T ss_pred             e
Confidence            3

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=80.62  E-value=6.3  Score=28.90  Aligned_cols=76  Identities=16%  Similarity=0.269  Sum_probs=56.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHHcCCeEE-EEcCCCCcHHHHHhCCCceecChhhHhh-cCCCEEEEecCchhH-HHHH
Q 044593           30 TSLKIAVIGF-GNFGQFLAKAFARHHHTLL-VHSRSDHSPAVRQQLNAPFFADLNDLCE-LHPDVVLLSTSILST-QSVL  105 (335)
Q Consensus        30 ~~~kI~IIG~-G~mG~siA~~L~~~G~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~aDvVIlavp~~~~-~~vl  105 (335)
                      +..||.|.|. |.-|+..+..+.+.|-+|+ ++.+...-..   -.|+..+++..|+.. .++|.=++-+|+... ..++
T Consensus         5 k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~---~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~   81 (119)
T d2nu7a1           5 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT---HLGLPVFNTVREAVAATGATASVIYVPAPFCKDSIL   81 (119)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEE---ETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHH
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCcc---cCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHH
Confidence            4569999995 9999999999999998865 5555443221   247888888888652 478999999998875 4455


Q ss_pred             hhc
Q 044593          106 KSI  108 (335)
Q Consensus       106 ~~l  108 (335)
                      +.+
T Consensus        82 EAi   84 (119)
T d2nu7a1          82 EAI   84 (119)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            555

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.22  E-value=0.54  Score=39.39  Aligned_cols=38  Identities=18%  Similarity=-0.019  Sum_probs=31.1

Q ss_pred             eEEEEc-ccHHHHHHHHHHHHcCCeEEEEcCCCCcHHHH
Q 044593           33 KIAVIG-FGNFGQFLAKAFARHHHTLLVHSRSDHSPAVR   70 (335)
Q Consensus        33 kI~IIG-~G~mG~siA~~L~~~G~~V~~~dr~~~~~~~a   70 (335)
                      +..|-| .+.||..+|..|.+.|++|++.||+.+..+..
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~   40 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL   40 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            345667 57799999999999999999999987765533

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.12  E-value=1.3  Score=35.72  Aligned_cols=34  Identities=18%  Similarity=0.452  Sum_probs=25.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHHcC-----CeEEE-EcCCC
Q 044593           31 SLKIAVIGFGNFGQFLAKAFARHH-----HTLLV-HSRSD   64 (335)
Q Consensus        31 ~~kI~IIG~G~mG~siA~~L~~~G-----~~V~~-~dr~~   64 (335)
                      .|||||=|+|+||..+.+.+.+.+     .+|+. -|.+.
T Consensus         2 ~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~   41 (190)
T d1k3ta1           2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNT   41 (190)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCC
T ss_pred             CeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCC
Confidence            479999999999999999887654     24443 45543