Citrus Sinensis ID: 044599

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540--

MSLASLQPIEEKPAVNQDPKTPTTTTSTPTRTVSQPQPKPQPRTQSSYLPKKRAEPTIPTIILNACDDIINNFIDPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPNVFSGFNGLTASAARGALSAARLLADLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRTDLVHALVEKVRIDLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADLDKLL

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEccccccccccccccccccccEEEEEEEccEEEEEEEEcccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccEEcccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEcccccEEEEEEccccccccEEEEEcccccEEEEEEccccccHHHHHHcccccEEEccccccEEEEEEccccccccEEEEEEcccEEEEEccEEccccccEEEEEEEcccccccccccccccccEEEEEEEEcccccEEEEEcccccccccccccccccccccEEEEEEcccccccccEEEEEcccccEEEcEEEEEEEccccccccccEEEEccccccccccccEEEEEEEEEccccEEEEEEEEccccccccEEEEEccccccccccccccccHHHHHHc

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccEEcccccccccccccccccEEEEcccccccEEEEccccccccccccccccccccEEEEEEEcccEEEEEEEEEEcHHHHHHHHccccccccccccccccccHcccHEEEcccHHcccccEEEEcccccEEEccEEcccccccccEEcccccccccccEEEEEccccccEEEEEEEcccccEcccccccccccccccccEEEcccEEEEccccEEEcHHHHHHcccccEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEccEcccccEEEEEEcccccHHHHHccHHHccccEEEEEEEcccccEEEEEccccccccccEcHcHcccccEEEEEEEccccccccEEEEEEcccccccccEEEEEEEccccccccccEEEccccccccccccccEEEEEEEEccccccEEEEEEccccccccEEEEEccccccccccEEEccHHHHHHHc

mslaslqpieekpavnqdpktpttttstptrtvsqpqpkpqprtqssylpkkraeptiptIILNACDDIinnfidpplkysvdprhvlsdnfapvdelpptecevvqgslpscldgayirngpnpqylprgpyhlfdgdgmlhSIKISRGRATLCSRYVRTYKYtieneagspilpnvfsgfnGLTASAARGALSAARLLADlpyairltpngdietigrhdfdgklamsmtahpkldsdtgeafafrygpvppfltyfrfdangkkqpnvpifsmtrpsflhdfaITKKYAVFVDIqigmnpmemifgggspvgadpakvcrigiipryatdesqmrwfevpgfNIIHAINawdeedgnavvmvapnilsvehtLDRTDLVHALVEKVRIDLRTgivtrrpmsarnldfgvinpaymakksRYVYaavgdpmpkisgvvkldvskgderrdCIVATrifgpgcyggepffvardpenpeteeddgyvvsyvhdentgeskflvmdaksprldivaavklprrvpygfhglfVRQADLDKLL

mslaslqpieekpavnqdpktpttttstptrtvsqpqpkpqprtqssylpkkraEPTIPTIILNACDDIINNFIDPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIeneagspilPNVFSGFNGLTASAARGALSAARLLADLPYAIrltpngdietIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRTDLVHALVEKVRidlrtgivtrrpmsarnldfgviNPAYMAKKSRYVYAAvgdpmpkisgvvkldvskgderRDCIVATrifgpgcyGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPRLDIVAAVklprrvpygfhglfvrqadLDKLL

MSLASLQPIEEKPAVNQDpktpttttstptrtvsqpqpKPQPRTQSSYLPKKRAEPTIPTIILNACDDIINNFIDPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPNVFSGFNgltasaargalsaarllaDLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRTDLVHALVEKVRIDLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADLDKLL

********************************************************TIPTIILNACDDIINNFIDPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPNVFSGFNGLTASAARGALSAARLLADLPYAIRLTPNGDIETIGRHDFDGKLAMSM********DTGEAFAFRYGPVPPFLTYFRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRTDLVHALVEKVRIDLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVA************GYVVSYVHDENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQA******

**************************************************************LNACDDIINNFIDPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPNVFSGFNGLTASAARGALSAARLLADLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRTDLVHALVEKVRIDLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADLDKLL

MSLASLQPIEEKP*************************************KKRAEPTIPTIILNACDDIINNFIDPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPNVFSGFNGLTASAARGALSAARLLADLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRTDLVHALVEKVRIDLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADLDKLL

*************************************************PKKRAEPTIPTIILNACDDIINNFIDPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPNVFSGFNGLTASAARGALSAARLLADLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRTDLVHALVEKVRIDLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADL**LL

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		542	2.2.26 [Sep-21-2011]
O49675		595	Probable carotenoid cleav	yes	no	0.905	0.825	0.709	0.0
Q84K96		369	Zeaxanthin 7,8(7',8')-cle	N/A	no	0.630	0.926	0.575	1e-111
Q9C6Z1		589	Probable 9-cis-epoxycarot	no	no	0.830	0.764	0.409	2e-99
O49505		583	9-cis-epoxycarotenoid dio	no	no	0.848	0.789	0.373	3e-92
Q94IR2		543	Carotenoid 9,10(9',10')-c	N/A	no	0.869	0.867	0.375	4e-92
O65572		538	Carotenoid 9,10(9',10')-c	no	no	0.863	0.869	0.371	3e-91
Q9LRR7		599	9-cis-epoxycarotenoid dio	no	no	0.830	0.751	0.382	4e-91
Q9M6E8		615	9-cis-epoxycarotenoid dio	N/A	no	0.826	0.728	0.372	2e-90
Q8LP17		541	Carotenoid 9,10(9',10')-c	N/A	no	0.857	0.859	0.369	4e-90
Q9M9F5		657	9-cis-epoxycarotenoid dio	no	no	0.822	0.678	0.376	4e-90

>sp\|O49675\|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1	Back alignment and function desciption

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/524 (70%), Positives = 437/524 (83%), Gaps = 33/524 (6%)

Query: 50  PKKRAEPTIPTIILNACDDIINNFIDPPLKYSVDPRHVLSDNFAPV-DELPPTECEVVQG 108
           PK R E T+ T +    +D+IN FIDPP + SVDP+HVLSDNFAPV DELPPT+CE++ G
Sbjct: 73  PKLRPEMTLATALFTTVEDVINTFIDPPSRPSVDPKHVLSDNFAPVLDELPPTDCEIIHG 132

Query: 109 SLPSCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIEN 168
           +LP  L+GAYIRNGPNPQ+LPRGPYHLFDGDGMLH+IKI  G+ATLCSRYV+TYKY +E 
Sbjct: 133 TLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEK 192

Query: 169 EAGSPILPNVFSGFNGLTASAARGALSAARLL---------------------------- 200
           + G+P++PNVFSGFNG+TAS ARGAL+AAR+L                            
Sbjct: 193 QTGAPVMPNVFSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALG 252

Query: 201 -ADLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYF 259
            +DLPYA+RLT +GDIETIGR+DFDGKLAMSMTAHPK D  TGE FAFRYGPVPPFLTYF
Sbjct: 253 ESDLPYAVRLTESGDIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGPVPPFLTYF 312

Query: 260 RFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGM--NPMEMIFGGGSPVGAD 317
           RFD+ GKKQ +VPIFSMT PSFLHDFAITK++A+F +IQ+GM  N ++++  GGSPVG D
Sbjct: 313 RFDSAGKKQRDVPIFSMTSPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTD 372

Query: 318 PAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLD 377
             K  R+G+IP+YA DES+M+WFEVPGFNIIHAINAWDE+DGN+VV++APNI+S+EHTL+
Sbjct: 373 NGKTPRLGVIPKYAGDESEMKWFEVPGFNIIHAINAWDEDDGNSVVLIAPNIMSIEHTLE 432

Query: 378 RTDLVHALVEKVRIDLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKIS 437
           R DLVHALVEKV+IDL TGIV R P+SARNLDF VINPA++ + SRYVYAA+GDPMPKIS
Sbjct: 433 RMDLVHALVEKVKIDLVTGIVRRHPISARNLDFAVINPAFLGRCSRYVYAAIGDPMPKIS 492

Query: 438 GVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENT 497
           GVVKLDVSKGD R DC VA R++G GCYGGEPFFVARDP NPE EEDDGYVV+YVHDE T
Sbjct: 493 GVVKLDVSKGD-RDDCTVARRMYGSGCYGGEPFFVARDPGNPEAEEDDGYVVTYVHDEVT 551

Query: 498 GESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADLDKL 541
           GESKFLVMDAKSP L+IVAAV+LPRRVPYGFHGLFV+++DL+KL
Sbjct: 552 GESKFLVMDAKSPELEIVAAVRLPRRVPYGFHGLFVKESDLNKL 595

May be involved in carotenoid cleavage.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: -

>sp\|Q84K96\|ZCD_CROSA Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1	Back alignment and function description

>sp\|Q9C6Z1\|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1	Back alignment and function description

>sp\|O49505\|NCED2_ARATH 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1	Back alignment and function description

>sp\|Q94IR2\|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1	Back alignment and function description

>sp\|O65572\|CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2	Back alignment and function description

>sp\|Q9LRR7\|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1	Back alignment and function description

>sp\|Q9M6E8\|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1	Back alignment and function description

>sp\|Q8LP17\|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1	Back alignment and function description

>sp\|Q9M9F5\|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		542
83628262		603	carotenoid cleavage dioxygenase 4a [Citr	0.998	0.897	0.935	0.0
224146522		589	predicted protein [Populus trichocarpa]	0.977	0.899	0.748	0.0
118488939		507	unknown [Populus trichocarpa x Populus d	0.881	0.942	0.788	0.0
224083508		507	predicted protein [Populus trichocarpa]	0.881	0.942	0.782	0.0
255557829		618	9-cis-epoxycarotenoid dioxygenase, putat	0.900	0.789	0.767	0.0
225427589		599	PREDICTED: probable carotenoid cleavage	0.902	0.816	0.745	0.0
387763754		599	carotenoid cleavage dioxygenase 4a, part	0.902	0.816	0.743	0.0
449502172		591	PREDICTED: probable carotenoid cleavage	0.898	0.824	0.726	0.0
449460074		591	PREDICTED: probable carotenoid cleavage	0.898	0.824	0.724	0.0
164551334		588	carotenoid cleavage dioxygenase 4 [Rosa	0.889	0.819	0.735	0.0

>gi\|83628262\|gb\|ABC26011.1\| carotenoid cleavage dioxygenase 4a [Citrus clementina]	Back alignment and taxonomy information

 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/571 (93%), Positives = 540/571 (94%), Gaps = 30/571 (5%)

Query: 1   MSLASLQPIEEKPAVNQDPKTPTTTTSTPTRTVSQPQPKPQPRTQSSYLPKKRAEPTIPT 60
            S++S++ IEEKPAVNQDPKTPTTTTSTPTRTVSQPQPKPQPRTQSSYLPKKRAEPTIPT
Sbjct: 34  FSVSSVR-IEEKPAVNQDPKTPTTTTSTPTRTVSQPQPKPQPRTQSSYLPKKRAEPTIPT 92

Query: 61  IILNACDDIINNFIDPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIR 120
           IILNACDDIINNFIDPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIR
Sbjct: 93  IILNACDDIINNFIDPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIR 152

Query: 121 NGPNPQYLPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPNVFS 180
           NGPNPQYLPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPNVFS
Sbjct: 153 NGPNPQYLPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPNVFS 212

Query: 181 GFNGLTASAARGALSAARLLA-----------------------------DLPYAIRLTP 211
           GFNGLTASAARGALSAARLLA                             DLPYAIRLTP
Sbjct: 213 GFNGLTASAARGALSAARLLAGQFNPVNGIGLANTNLAFFGNRLYALGESDLPYAIRLTP 272

Query: 212 NGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRFDANGKKQPNV 271
           NGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRFDANGKKQPNV
Sbjct: 273 NGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRFDANGKKQPNV 332

Query: 272 PIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYA 331
           PIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYA
Sbjct: 333 PIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYA 392

Query: 332 TDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRTDLVHALVEKVRI 391
           TDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRTDLVHALVEKVRI
Sbjct: 393 TDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRTDLVHALVEKVRI 452

Query: 392 DLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERR 451
           DLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERR
Sbjct: 453 DLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERR 512

Query: 452 DCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPR 511
           DCIVATRI+GPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPR
Sbjct: 513 DCIVATRIYGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGESKFLVMDAKSPR 572

Query: 512 LDIVAAVKLPRRVPYGFHGLFVRQADLDKLL 542
           LDIVAAVKLPRRVPYGFHGLFVRQA+LDKLL
Sbjct: 573 LDIVAAVKLPRRVPYGFHGLFVRQAELDKLL 603

Source: Citrus clementina

Species: Citrus clementina

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224146522\|ref\|XP_002326037.1\| predicted protein [Populus trichocarpa] gi\|222862912\|gb\|EEF00419.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|118488939\|gb\|ABK96278.1\| unknown [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

>gi\|224083508\|ref\|XP_002307055.1\| predicted protein [Populus trichocarpa] gi\|222856504\|gb\|EEE94051.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255557829\|ref\|XP_002519944.1\| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis] gi\|223540990\|gb\|EEF42548.1\| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225427589\|ref\|XP_002268404.1\| PREDICTED: probable carotenoid cleavage dioxygenase 4, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|387763754\|gb\|AFJ94675.1\| carotenoid cleavage dioxygenase 4a, partial [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449502172\|ref\|XP_004161563.1\| PREDICTED: probable carotenoid cleavage dioxygenase 4, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449460074\|ref\|XP_004147771.1\| PREDICTED: probable carotenoid cleavage dioxygenase 4, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|164551334\|gb\|ABY60886.1\| carotenoid cleavage dioxygenase 4 [Rosa x damascena]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		542
TAIR\|locus:2134796		595	NCED4 "nine-cis-epoxycarotenoi	0.625	0.569	0.774	3.5e-202
TAIR\|locus:2202492		589	NCED5 "nine-cis-epoxycarotenoi	0.599	0.551	0.428	2.6e-94
TAIR\|locus:2091652		599	NCED3 "nine-cis-epoxycarotenoi	0.599	0.542	0.401	1.9e-89
TAIR\|locus:2124489		583	NCED2 "nine-cis-epoxycarotenoi	0.608	0.566	0.395	7.2e-88
TAIR\|locus:2032085		657	NCED9 "nine-cis-epoxycarotenoi	0.599	0.494	0.411	1.9e-87
TAIR\|locus:2087418		538	CCD1 "carotenoid cleavage diox	0.616	0.620	0.397	1.3e-86
TAIR\|locus:2093751		577	NCED6 "nine-cis-epoxycarotenoi	0.595	0.559	0.393	7.4e-80
UNIPROTKB\|O06785		501	MT0683 "Carotenoid cleavage ox	0.389	0.421	0.298	2e-32
UNIPROTKB\|Q53353		485	Q53353 "Lignostilbene-alpha,be	0.470	0.525	0.280	6.1e-26
ASPGD\|ASPL0000067272		555	AN7062 [Emericella nidulans (t	0.463	0.452	0.273	9.6e-21

TAIR\|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1436 (510.6 bits), Expect = 3.5e-202, Sum P(2) = 3.5e-202
 Identities = 265/342 (77%), Positives = 306/342 (89%)

Query:   202 DLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVPPFLTYFRF 261
             DLPYA+RLT +GDIETIGR+DFDGKLAMSMTAHPK D  TGE FAFRYGPVPPFLTYFRF
Sbjct:   255 DLPYAVRLTESGDIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGPVPPFLTYFRF 314

Query:   262 DANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGM--NPMEMIFGGGSPVGADPA 319
             D+ GKKQ +VPIFSMT PSFLHDFAITK++A+F +IQ+GM  N ++++  GGSPVG D  
Sbjct:   315 DSAGKKQRDVPIFSMTSPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTDNG 374

Query:   320 KVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRT 379
             K  R+G+IP+YA DES+M+WFEVPGFNIIHAINAWDE+DGN+VV++APNI+S+EHTL+R 
Sbjct:   375 KTPRLGVIPKYAGDESEMKWFEVPGFNIIHAINAWDEDDGNSVVLIAPNIMSIEHTLERM 434

Query:   380 DLVHALVEKVRIDLRTGIVTRRPMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGV 439
             DLVHALVEKV+IDL TGIV R P+SARNLDF VINPA++ + SRYVYAA+GDPMPKISGV
Sbjct:   435 DLVHALVEKVKIDLVTGIVRRHPISARNLDFAVINPAFLGRCSRYVYAAIGDPMPKISGV 494

Query:   440 VKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDENTGE 499
             VKLDVSKGD R DC VA R++G GCYGGEPFFVARDP NPE EEDDGYVV+YVHDE TGE
Sbjct:   495 VKLDVSKGD-RDDCTVARRMYGSGCYGGEPFFVARDPGNPEAEEDDGYVVTYVHDEVTGE 553

Query:   500 SKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADLDKL 541
             SKFLVMDAKSP L+IVAAV+LPRRVPYGFHGLFV+++DL+KL
Sbjct:   554 SKFLVMDAKSPELEIVAAVRLPRRVPYGFHGLFVKESDLNKL 595

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010287 "plastoglobule" evidence=IDA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR\|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|O06785 MT0683 "Carotenoid cleavage oxygenase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53353 Q53353 "Lignostilbene-alpha,beta-dioxygenase isozyme I" [Sphingomonas paucimobilis (taxid:13689)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000067272 AN7062 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49675	CCD4_ARATH	1, ., 1, 4, ., 9, 9, ., -	0.7099	0.9059	0.8252	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.99	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		542
PLN02258		590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	1e-157
pfam03055		469	pfam03055, RPE65, Retinal pigment epithelial membr	1e-157
PLN02491		545	PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava	1e-114
COG3670		490	COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge	2e-90
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	4e-15

>gnl\|CDD\|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

 Score =  461 bits (1189), Expect = e-157
 Identities = 220/584 (37%), Positives = 313/584 (53%), Gaps = 68/584 (11%)

Query: 2   SLASLQPIEEKPAVNQDPKTPTTTTSTPTRTVSQPQPKPQPRTQSSYL---PKKRAEPTI 58
           S  S +P   KP+ +    TP+        + S P     P   +      P +RA    
Sbjct: 28  SSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAATTQTPQLNPLQRAAAA- 86

Query: 59  PTIILNACDDIINNFIDP-----PLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSC 113
                 A D + +  +       PL  + DP   ++ NFAPV E P      V G +P C
Sbjct: 87  ------ALDAVESALVSHLERQHPLPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDC 140

Query: 114 LDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSP 173
           +DG Y+RNG NP + P   +HLFDGDGM+H+++I  G A+   R+  T +   E   G P
Sbjct: 141 IDGVYVRNGANPLFEPVAGHHLFDGDGMVHAVRIGNGSASYACRFTETNRLVQERALGRP 200

Query: 174 ILP------------------NVFSGFNGLTASAARGALSAA------RLLA----DLPY 205
           + P                       F  + AS   G  +A       RLLA    DLPY
Sbjct: 201 VFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPY 260

Query: 206 AIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPV-PPFLTYFRFDAN 264
            +R+T +GD+ET+GR+DFDG+L  SM AHPK+D  TGE FA  Y  V  P+L YFRF  +
Sbjct: 261 QVRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPD 320

Query: 265 GKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRI 324
           G+K P+V I  + +P+ +HDFAIT+ + V  D Q+     EMI  GGSPV  D  K  R 
Sbjct: 321 GEKSPDVEI-PLDQPTMMHDFAITENFVVIPDQQVVFKLSEMIR-GGSPVVYDKNKTSRF 378

Query: 325 GIIPRYATDESQMRWFEVPGFNIIHAINAWDEEDGNAVV-----MVAPNILSVEHTLDRT 379
           G++P+ ATD S+++W EVP     H  NAW+E + + VV     M  P+ +  E      
Sbjct: 379 GVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIFNES----D 434

Query: 380 DLVHALVEKVRIDLRTGIVTRRPM---SARNLDFGVINPAYMAKKSRYVYAAVGDPMPKI 436
           + + +++ ++R++LRTG  TRRP+      NL+ G++N   + +K+RY Y A+ +P PK+
Sbjct: 435 ESLRSVLSEIRLNLRTGESTRRPIISGEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKV 494

Query: 437 SGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHDEN 496
           SG  K+D+S G+      V   I+G G YGGEPFFV R        EDDGY++++VHDE 
Sbjct: 495 SGFAKVDLSTGE------VKKYIYGEGRYGGEPFFVPRGSG--SEAEDDGYILAFVHDEE 546

Query: 497 TGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADLDK 540
            G+S+  V++A +  L++ A VKLP RVPYGFHG F+   DL K
Sbjct: 547 KGKSELQVVNAVN--LELEATVKLPSRVPYGFHGTFISAEDLLK 588

Length = 590

>gnl\|CDD\|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein	Back alignment and domain information

>gnl\|CDD\|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>gnl\|CDD\|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		542
PLN02258		590	9-cis-epoxycarotenoid dioxygenase NCED	100.0
PLN02491		545	carotenoid 9,10(9',10')-cleavage dioxygenase	100.0
COG3670		490	Lignostilbene-alpha,beta-dioxygenase and related e	100.0
PF03055		486	RPE65: Retinal pigment epithelial membrane protein	100.0
PLN02969		610	9-cis-epoxycarotenoid dioxygenase	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	99.96
PF06433		342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	88.24

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

Probab=100.00  E-value=7.2e-131  Score=1082.12  Aligned_cols=481  Identities=43%  Similarity=0.810  Sum_probs=437.1

Q ss_pred             CCCCCCCChhHHHHHHHHHHHhhhc--CCCCCCCCCCcccccCCCcccccCCCCccceeeccCCCCCcceEEeecCCCCC
Q 044599           50 PKKRAEPTIPTIILNACDDIINNFI--DPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPNPQY  127 (542)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~p~~~l~gnfapv~E~~~~~~~~V~G~IP~~L~Gt~~RNGP~p~~  127 (542)
                      ++.++.|++++++||++|+.|.+++  .+|++++.||+++|+|||+|+.|+++..+++|+|+||+||+|+||||||||++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f  154 (590)
T PLN02258         75 PQLNPLQRAAAAALDAVESALVSHLERQHPLPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLF  154 (590)
T ss_pred             cccCcchhhHHHHHHHHHHHHhhhccccCCCCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCC
Confidence            4457899999999999999888773  46899999999999999999977777778899999999999999999999999


Q ss_pred             CCCCCccCcCCCcceEEEEeecCceeEEEEeecchhhHHhhhcCCCCCcccccCCCC-----------------C-----
Q 044599          128 LPRGPYHLFDGDGMLHSIKISRGRATLCSRYVRTYKYTIENEAGSPILPNVFSGFNG-----------------L-----  185 (542)
Q Consensus       128 ~~~~~~HwFDGdGmlh~~~f~~G~v~y~sRyV~T~~~~~E~~~g~~~f~~~~s~~~~-----------------~-----  185 (542)
                      .+.+++||||||||||+|+|++|+|+|+||||||++|++|+++|+++|++.++.+++                 .     
T Consensus       155 ~p~~~~H~FDGDGMvhav~f~dG~a~y~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~  234 (590)
T PLN02258        155 EPVAGHHLFDGDGMVHAVRIGNGSASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASR  234 (590)
T ss_pred             CCCCCCccccCCceEEEEEECCCeEEEEeeeecchhHHHHHhcCCcccccccccccccccccccchhhcccccccccccc
Confidence            888889999999999999999999999999999999999999999999875544321                 0     


Q ss_pred             CcCccchhh--hHhHHhc----cCCEEeecCCCCCcceeecccCCCcccccccCCCccCCCCCcEEEEEEcCC-CCcEEE
Q 044599          186 TASAARGAL--SAARLLA----DLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPV-PPFLTY  258 (542)
Q Consensus       186 ~~~~an~~~--~~~rlla----~~Py~i~i~p~~tLeT~G~~d~~g~l~~~ftAHPk~Dp~tGel~~f~~~~~-~p~~~~  258 (542)
                      ..+.||+++  +.+|+||    |+||++++++++||||+|++||+|+|..+||||||+||+|||||+|+|+.. +|+++|
T Consensus       235 ~~~~ANT~vv~~~grLlAL~E~g~Py~l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~  314 (590)
T PLN02258        235 GTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKY  314 (590)
T ss_pred             ccCCCceeEEEECCEEEEEEcCCCceEecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEE
Confidence            125677765  7789988    899999999888999999999999998899999999999999999999975 599999


Q ss_pred             EEEcCCCCccceeecccCCCCceeeeeecCCcEEEEEecccccChHHHHhCCCCCeeeCCCCCeEEEEEeCCCCCCCceE
Q 044599          259 FRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMR  338 (542)
Q Consensus       259 ~~~~~~G~~~~~v~i~~~~~p~~iHDfaiTeny~Vf~~~pl~~~~~~~l~~g~~~~~~d~~~~tr~~VipR~~~~~~~v~  338 (542)
                      |++|++|++.+.++| +++.++|||||||||||+||+++|+++++.+|+ .|++++.||+++++|||||||++++.++++
T Consensus       315 ~~~d~~G~~~~~~~i-~lp~p~~~HDFaiTenY~Vf~d~Pl~~~~~~~~-~g~~~~~~d~~~~srfgVipR~~~~~~~ir  392 (590)
T PLN02258        315 FRFSPDGEKSPDVEI-PLDQPTMMHDFAITENFVVIPDQQVVFKLSEMI-RGGSPVVYDKNKTSRFGVLPKNATDASEIQ  392 (590)
T ss_pred             EEECCCCCEEeeEEe-eCCCCccccceeccCceEEEEccCceEcHHHHh-hCCCceEECCCCCcEEEEEECCCCCCCceE
Confidence            999999999998888 899999999999999999999999999999998 677999999999999999999987667899


Q ss_pred             EeecCCeeEeeecccccCCCCCEEEEEeecCCCcccccccc-ccccceEEEEEEeCCCCcEEEEEccC---CCCcCcccC
Q 044599          339 WFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRT-DLVHALVEKVRIDLRTGIVTRRPMSA---RNLDFGVIN  414 (542)
Q Consensus       339 w~e~p~~f~fH~~NA~Ee~dg~~Ivl~~~~~~~~~~~~~~~-~~~~~~L~r~ridl~tg~v~~~~L~~---~~~EfP~In  414 (542)
                      ||++|+||+||++|||||+++++||+++|++.+.+.+++.. +..+++|+|||||++||+++++.|.+   .++|||+||
T Consensus       393 wfe~p~~f~fH~~NA~Ee~~~~~VVvd~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~~~~~~~~EFP~In  472 (590)
T PLN02258        393 WVEVPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIISGEQVNLEAGMVN  472 (590)
T ss_pred             EEecCCcEEEecccccccCCCCeEEEEEecccChhhhcccccccccceEEEEEEECCCCceeeeEeecCCCcccccceEC
Confidence            99999999999999999866568999999987766555443 35678999999999999999888865   799999999


Q ss_pred             ccCCCCCCcEEEEeeCCCCCCcccEEEeeccCCCcccceeEEEEEcCCCccCCCcEEeecCCCCCCCCCCCcEEEEEEEc
Q 044599          415 PAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPENPETEEDDGYVVSYVHD  494 (542)
Q Consensus       415 ~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEPiFVPr~~~~~~~~EDDG~Lls~V~d  494 (542)
                      ++|.||+|||+|+++.++++++++|+|+|+++| +     ++.|++|++||+|||+||||++++  .+|||||||++|||
T Consensus       473 ~~~~Grk~Ry~Y~~~~~~~~~~~givK~Dl~tg-~-----~~~~~~g~g~~~gEPvFVPr~~~~--~~EDDGylls~V~d  544 (590)
T PLN02258        473 RNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTG-E-----VKKYIYGEGRYGGEPFFVPRGSGS--EAEDDGYILAFVHD  544 (590)
T ss_pred             HHHCCCccceEEEeccCCCCCCCeEEEEECCCC-c-----EEEEECCCCccccCCEeccCCCCC--cccCCcEEEEEEEE
Confidence            999999999999998888889999999999999 3     788999999999999999998432  35999999999999


Q ss_pred             CCCCeeEEEEEeCCCCCCCeeEEEEcCCcCCCCccccccccchhhccC
Q 044599          495 ENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADLDKLL  542 (542)
Q Consensus       495 ~~~~~S~l~IlDA~~~~~~pVArv~LP~rvP~GFHG~fv~~~~l~~~~  542 (542)
                      +++++|+|+||||++  +++||||+||+||||||||+|+++++|.+|+
T Consensus       545 ~~~~~SeL~IlDA~~--l~~VArv~LP~rVP~GFHG~wv~~~~l~~q~  590 (590)
T PLN02258        545 EEKGKSELQVVNAVN--LELEATVKLPSRVPYGFHGTFISAEDLLKQA  590 (590)
T ss_pred             CCCCceEEEEEeCCC--CcccEEEECCCCCCCcccccccCHHHHhhcC
Confidence            999999999999999  5689999999999999999999999999985

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection	Back alignment and domain information

>PLN02969 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		542
3npe_A		529	Structure Of Vp14 In Complex With Oxygen Length = 5		3e-87
2biw_A		490	Crystal Structure Of Apocarotenoid Cleavage Oxygena		2e-30
3fsn_A		533	Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut		3e-13

>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529

Back alignment and structure

Iteration: 1

Score = 319 bits (817), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 185/511 (36%), Positives = 272/511 (53%), Gaps = 48/511 (9%) Query: 67 DDIINNFIDPP--LKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPN 124 + + N ++ P L + DP ++ NFAPV E PP V G +P +DG Y RNG N Sbjct: 25 EGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGAN 84 Query: 125 PQYLPRGPYHLFDGDGMLHSIKISRGRA-TLCSRYVRTYKYTIENEAGSPILPNVFSGFN 183 P + P +HLFDGDGM+H+++I G A + R+ T + E G P+ P + Sbjct: 85 PCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELH 144 Query: 184 XXXXXXXXXX----------------------------XXXXXXXXDLPYAIRLTPNGDI 215 DLPY +R+ +GD+ Sbjct: 145 GHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDL 204 Query: 216 ETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPVP-PFLTYFRFDANGKKQPNVPIF 274 ET+GR+DFDG+L +M AHPKLD TGE A Y + P+L YF F +G K +V I Sbjct: 205 ETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEI- 263 Query: 275 SMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDE 334 + +P+ +HDFAIT+ V D Q+ EM+ GGSPV D AK R G++P++A D Sbjct: 264 PLEQPTMIHDFAITENLVVVPDHQVVFKLQEML-RGGSPVVLDAAKTSRFGVLPKHAADA 322 Query: 335 SQMRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDRTD-LVHALVEKVRIDL 393 S+M W +VP H NAW++E VV++ + + + +D + +++ ++R+D Sbjct: 323 SEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDA 382 Query: 394 RTGIVTRR----PMSARNLDFGVINPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDE 449 RTG TRR P NL+ G++N + +++RY Y AV +P PK+SG K+D+S G+ Sbjct: 383 RTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGE- 441 Query: 450 RRDCIVATRIFGPGCYGGEPFFVARDPENPETE-EDDGYVVSYVHDENTGESKFLVMDAK 508 + +G G +GGEP FV DP EDDGYV+++VHDE G S+ LV++A Sbjct: 442 -----LTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAA 496 Query: 509 SPRLDIVAAVKLPRRVPYGFHGLFVRQADLD 539 RL+ A V+LP RVP+GFHG F+ +L+ Sbjct: 497 DMRLE--ATVQLPSRVPFGFHGTFITGQELE 525

PyMOL of 3npe

>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490

Back alignment and structure

>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		542
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	1e-147
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	1e-138
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	1e-107
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529	Back alignment and structure

 Score =  431 bits (1110), Expect = e-147
 Identities = 192/548 (35%), Positives = 284/548 (51%), Gaps = 63/548 (11%)

Query: 32  TVSQPQPKPQPRTQSSYLPKKRAEPTIPTIILNACDDIINNFIDPP--LKYSVDPRHVLS 89
              + Q     R  ++ L                 +  + N ++ P  L  + DP   ++
Sbjct: 3   EGGKKQLNLFQRAAAAALD-------------AFEEGFVANVLERPHGLPSTADPAVQIA 49

Query: 90  DNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPNPQYLPRGPYHLFDGDGMLHSIKISR 149
            NFAPV E PP     V G +P  +DG Y RNG NP + P   +HLFDGDGM+H+++I  
Sbjct: 50  GNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRN 109

Query: 150 GRA-TLCSRYVRTYKYTIENEAGSPILPNVFSGFNGLTASAARGALSAARLL-------- 200
           G A +   R+  T +   E   G P+ P      +G  +  AR AL  AR          
Sbjct: 110 GAAESYACRFTETARLRQERAIGRPVFPKAIGELHGH-SGIARLALFYARAACGLVDPSA 168

Query: 201 ---------------------ADLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDS 239
                                 DLPY +R+  +GD+ET+GR+DFDG+L  +M AHPKLD 
Sbjct: 169 GTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDP 228

Query: 240 DTGEAFAFRYGPVP-PFLTYFRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQ 298
            TGE  A  Y  +  P+L YF F  +G K  +V I  + +P+ +HDFAIT+   V  D Q
Sbjct: 229 ATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEI-PLEQPTMIHDFAITENLVVVPDHQ 287

Query: 299 IGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQMRWFEVPGFNIIHAINAWDEED 358
           +     EM+  GGSPV  D AK  R G++P++A D S+M W +VP     H  NAW++E 
Sbjct: 288 VVFKLQEMLR-GGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEA 346

Query: 359 GNAVVMVAPNILSVEHTL-DRTDLVHALVEKVRIDLRTGIVTRR----PMSARNLDFGVI 413
              VV++   +   +    +  + + +++ ++R+D RTG  TRR    P    NL+ G++
Sbjct: 347 TGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMV 406

Query: 414 NPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVA 473
           N   + +++RY Y AV +P PK+SG  K+D+S G+      +    +G G +GGEP FV 
Sbjct: 407 NRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGE------LTKFEYGEGRFGGEPCFVP 460

Query: 474 RDPENPE-TEEDDGYVVSYVHDENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLF 532
            DP       EDDGYV+++VHDE  G S+ LV++A    + + A V+LP RVP+GFHG F
Sbjct: 461 MDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAA--DMRLEATVQLPSRVPFGFHGTF 518

Query: 533 VRQADLDK 540
           +   +L+ 
Sbjct: 519 ITGQELEA 526

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		542
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	100.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	100.0
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	100.0

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}	Back alignment and structure

Probab=100.00  E-value=5.1e-127  Score=1047.69  Aligned_cols=481  Identities=39%  Similarity=0.736  Sum_probs=434.9

Q ss_pred             CCCCCCCChhHHHHHHHHHHHhhhc---CCCCCCCCCCcccccCCCcccccCCCCccceeeccCCCCCcceEEeecCCCC
Q 044599           50 PKKRAEPTIPTIILNACDDIINNFI---DPPLKYSVDPRHVLSDNFAPVDELPPTECEVVQGSLPSCLDGAYIRNGPNPQ  126 (542)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~p~~~l~gnfapv~E~~~~~~~~V~G~IP~~L~Gt~~RNGP~p~  126 (542)
                      ++-.+.|++++++||++|++|.+++   ++|+++++||..+|+|||+||.|++...++.|+|+||+||+|+||||||||+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGpnP~   86 (529)
T 3npe_A            7 KQLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPC   86 (529)
T ss_dssp             -CCCSHHHHHHHHHHHHHHHTCCCCCCTTSCCCTTTCHHHHTSGGGSCCCCEEEEESCCEEECCCTTCEEEEEECCBCCS
T ss_pred             CCCChhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccchhccCcccccccCCcccceEeecCCccCCceEEEecCCcC
Confidence            3456788999999999999888864   6899999999999999999997776666678999999999999999999998


Q ss_pred             CCCCCCccCcCCCcceEEEEeecCce-eEEEEeecchhhHHhhhcCCCCCcccccCCCCC--------------------
Q 044599          127 YLPRGPYHLFDGDGMLHSIKISRGRA-TLCSRYVRTYKYTIENEAGSPILPNVFSGFNGL--------------------  185 (542)
Q Consensus       127 ~~~~~~~HwFDGdGmlh~~~f~~G~v-~y~sRyV~T~~~~~E~~~g~~~f~~~~s~~~~~--------------------  185 (542)
                      +.+.+++||||||||||+|+|++|+| +|+||||||++|++|+++|+++|++.++.+.+.                    
T Consensus        87 f~~~~~~HwFDGdGmlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  166 (529)
T 3npe_A           87 FDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDP  166 (529)
T ss_dssp             SCCSSCCCGGGSCBEEEEEEEETTEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHTTSCCG
T ss_pred             cCCcCCCccCCCCceEEEEEECCCccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhcccccccc
Confidence            87777899999999999999999999 999999999999999999999998766543221                    


Q ss_pred             --CcCccchhh--hHhHHhc----cCCEEeecCCCCCcceeecccCCCcccccccCCCccCCCCCcEEEEEEcCC-CCcE
Q 044599          186 --TASAARGAL--SAARLLA----DLPYAIRLTPNGDIETIGRHDFDGKLAMSMTAHPKLDSDTGEAFAFRYGPV-PPFL  256 (542)
Q Consensus       186 --~~~~an~~~--~~~rlla----~~Py~i~i~p~~tLeT~G~~d~~g~l~~~ftAHPk~Dp~tGel~~f~~~~~-~p~~  256 (542)
                        ..+.||+++  +.+|+||    |+||++++||++||||+|++||+|+|..+||||||+||+||||++|+|+.. +|++
T Consensus       167 ~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p~~  246 (529)
T 3npe_A          167 SAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYL  246 (529)
T ss_dssp             GGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSCCC
T ss_pred             cccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCCCCcE
Confidence              135677775  7899987    789999999867999999999999999999999999999999999999986 5999


Q ss_pred             EEEEEcCCCCccceeecccCCCCceeeeeecCCcEEEEEecccccChHHHHhCCCCCeeeCCCCCeEEEEEeCCCCCCCc
Q 044599          257 TYFRFDANGKKQPNVPIFSMTRPSFLHDFAITKKYAVFVDIQIGMNPMEMIFGGGSPVGADPAKVCRIGIIPRYATDESQ  336 (542)
Q Consensus       257 ~~~~~~~~G~~~~~v~i~~~~~p~~iHDfaiTeny~Vf~~~pl~~~~~~~l~~g~~~~~~d~~~~tr~~VipR~~~~~~~  336 (542)
                      +||++|++|++.+.++| +++.|+|||||||||||+||+++|+++|+.+|+ .|++++.|++++++|||||||++++.+.
T Consensus       247 ~~~~~~~~G~~~~~~~i-~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~-~g~~~~~~~p~~~tr~~VipR~~~~~~~  324 (529)
T 3npe_A          247 KYFYFRPDGTKSDDVEI-PLEQPTMIHDFAITENLVVVPDHQVVFKLQEML-RGGSPVVLDAAKTSRFGVLPKHAADASE  324 (529)
T ss_dssp             EEEEECTTCCBCCCEEC-CCSSCBCCCCCEECSSEEEEEECSEEECGGGGT-TTCCSEEECTTSCCEEEEEETTCSSGGG
T ss_pred             EEEEECCCCCEEEEEEE-eCCCCceEeeEEecCCeEEEEeCCeEEcHHHHh-CCCCceEECCCCCcEEEEEECCCCCCCc
Confidence            99999999999888887 899999999999999999999999999999998 6789999999999999999999876678


Q ss_pred             eEEeecCCeeEeeecccccCCCCCEEEEEeecCCCccccccc-cccccceEEEEEEeCCCCcEEEEEcc----CCCCcCc
Q 044599          337 MRWFEVPGFNIIHAINAWDEEDGNAVVMVAPNILSVEHTLDR-TDLVHALVEKVRIDLRTGIVTRRPMS----ARNLDFG  411 (542)
Q Consensus       337 v~w~e~p~~f~fH~~NA~Ee~dg~~Ivl~~~~~~~~~~~~~~-~~~~~~~L~r~ridl~tg~v~~~~L~----~~~~EfP  411 (542)
                      |+||++|+||+||++|||||+++++||++.||+.+.+.+++. .+.+.++|+|||||+++|+++++.|.    +.++|||
T Consensus       325 vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP  404 (529)
T 3npe_A          325 MAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVG  404 (529)
T ss_dssp             CEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCCSSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEE
T ss_pred             eEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhhccchhhccceEEEEEcCCCCCEEeEEecccccCccccCc
Confidence            999999999999999999987555888888887666665543 24567899999999999999999887    4889999


Q ss_pred             ccCccCCCCCCcEEEEeeCCCCCCcccEEEeeccCCCcccceeEEEEEcCCCccCCCcEEeecCCC---CCCCCCCCcEE
Q 044599          412 VINPAYMAKKSRYVYAAVGDPMPKISGVVKLDVSKGDERRDCIVATRIFGPGCYGGEPFFVARDPE---NPETEEDDGYV  488 (542)
Q Consensus       412 ~In~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~~~~~~~~~g~~~gEPiFVPr~~~---~~~~~EDDG~L  488 (542)
                      +||++|+||+|||+|+++.++++++++|+|+|++||+      +..||+|++||+|||+||||+++   +  .+||||||
T Consensus       405 ~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~------~~~~~~g~~~~~~EPvFVPrp~~~~~~--~~EDDG~l  476 (529)
T 3npe_A          405 MVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGE------LTKFEYGEGRFGGEPCFVPMDPAAAHP--RGEDDGYV  476 (529)
T ss_dssp             EECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCC------EEEEECCTTBCCCCCEEEECCSCSSSS--CCTTCEEE
T ss_pred             eEChhHcCCccceEEEeccCCCCCcceEEEEecCCCc------eEEEEcCCCccccCCEeeeCCCCCCCC--CCCCCcEE
Confidence            9999999999999999988877889999999999994      67899999999999999999831   5  78999999


Q ss_pred             EEEEEcCCCCeeEEEEEeCCCCCCCeeEEEEcCCcCCCCccccccccchhhccC
Q 044599          489 VSYVHDENTGESKFLVMDAKSPRLDIVAAVKLPRRVPYGFHGLFVRQADLDKLL  542 (542)
Q Consensus       489 ls~V~d~~~~~S~l~IlDA~~~~~~pVArv~LP~rvP~GFHG~fv~~~~l~~~~  542 (542)
                      |++|||+.+++|+|+||||++  +++|||++||+||||||||+|+++++|++|+
T Consensus       477 Ls~V~d~~~~~S~LlILDA~~--l~~vArv~LP~rvP~GfHG~wv~~~~l~~q~  528 (529)
T 3npe_A          477 LTFVHDERAGTSELLVVNAAD--MRLEATVQLPSRVPFGFHGTFITGQELEAQA  528 (529)
T ss_dssp             EEEEEBSSCCCEEEEEEETTT--TEEEEEEEESSCCCCCSCEEEEEHHHHTTCC
T ss_pred             EEEEEECCCCcEEEEEEeCCC--CccceEEECCCCCCCCccccccCHHHhhhhh
Confidence            999999999999999999999  6789999999999999999999999999985

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00