Citrus Sinensis ID: 044600

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MARASSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccEEEEEEccccHHHHHHHccccEEEccccccccccccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccHHccccccEEEEEcccccHHHHHHHccccEEEEccccccccccccccEEEEEcccccc
Coil and Loop (DISEMBL)
MARASSTTELAEKIAWHCALFMAIMLVLSCcessdsggfmgqvtqprnvnkpcdeiyvvregetlhtisekcgdpyiveqnphindpddvfpglvikitpfknr
Flexible Loop (DISEMBL)
MARASSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMgqvtqprnvnkpcDEIYVVREGETLHTISEKCGDPYIVEQNphindpddvfPGLVIKITPFKNR
Low Complexity Region (SEG)
MARASSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR
Disordered region (IsUnstruct)
**********AEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKIT*****
Disordered Region (DISOPRED)
************KIAWHCALFMAIMLVLSC********************KPCDEIYVVREGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPF***
Disordered Region (DISEMBL)
**********AEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR
Disordered Region (DISPRO)
**********AEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPF***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARASSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
356537085	206	PREDICTED: uncharacterized protein LOC10	0.980	0.495	0.654	3e-34
356548405	108	PREDICTED: uncharacterized protein LOC10	0.990	0.953	0.685	9e-34
356503801	99	PREDICTED: uncharacterized protein LOC10	0.903	0.949	0.72	4e-32
225440950	104	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.711	2e-31
357510995	96	hypothetical protein MTR_7g104250 [Medic	0.913	0.989	0.666	5e-29
224113145	108	predicted protein [Populus trichocarpa]	0.894	0.861	0.739	2e-27
224127542	120	predicted protein [Populus trichocarpa]	0.951	0.825	0.542	8e-25
225469318	113	PREDICTED: uncharacterized protein LOC10	0.971	0.893	0.544	3e-24
147767756	113	hypothetical protein VITISV_027722 [Viti	0.971	0.893	0.544	4e-24
356520475	112	PREDICTED: uncharacterized protein LOC10	0.913	0.848	0.552	3e-23

>gi|356537085|ref|XP_003537061.1| PREDICTED: uncharacterized protein LOC100780595 [Glycine max]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 86/113 (76%), Gaps = 11/113 (9%)

Query: 1   MARASSTTELAEKIAWHCALFMAIMLVLSCCESSDS---------GGFMGQVTQPRNVNK 51
           MA   S+T LAEKI+W+C++F+A+MLVLS CES+ S         G   G ++   N NK
Sbjct: 1   MACGCSSTTLAEKISWNCSVFVALMLVLSSCESNTSDFTSQMMLHGSVTGNISN--NNNK 58

Query: 52  PCDEIYVVREGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR 104
            CDEIYVVREGETL TISEKCGDPYIVE+NPHI+DPDDVFPGLVIKI PF NR
Sbjct: 59  ACDEIYVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFTNR 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548405|ref|XP_003542592.1| PREDICTED: uncharacterized protein LOC100786697 [Glycine max]

 Score =  147 bits (370), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 86/108 (79%), Gaps = 5/108 (4%)

Query: 1   MARASSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNV----NKPCDEI 56
           MA   S+T +AEKI+W+CA+F+A+MLVLS CES+ S  F  Q+    +V    NK CDEI
Sbjct: 1   MACGCSSTAMAEKISWNCAVFVALMLVLSSCESNTSD-FTTQMMFHESVSNSNNKACDEI 59

Query: 57  YVVREGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR 104
           YVVREGETL TISEKCGDPYIVE+NPHI+DPDDVFPGLVIKI PF NR
Sbjct: 60  YVVREGETLQTISEKCGDPYIVEENPHIHDPDDVFPGLVIKINPFTNR 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503801|ref|XP_003520691.1| PREDICTED: uncharacterized protein LOC100794241 [Glycine max]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 79/100 (79%), Gaps = 6/100 (6%)

Query: 10  LAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNV-----NKPCDEIYVVREGET 64
           +AEKI+W C LFMAI+LVLSCCESS +  F  Q+   RN+      K CDEIYVVREGET
Sbjct: 1   MAEKISWCCVLFMAIILVLSCCESS-TNEFRVQMLMQRNINNNNNKKACDEIYVVREGET 59

Query: 65  LHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR 104
           L TISEKCGDPYIVE+NPHI DPDDVFPGLVIKI PF NR
Sbjct: 60  LQTISEKCGDPYIVEENPHIQDPDDVFPGLVIKINPFTNR 99

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440950|ref|XP_002283136.1| PREDICTED: uncharacterized protein LOC100244252 [Vitis vinifera]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/104 (71%), Positives = 86/104 (82%)

Query: 1   MARASSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVR 60
           MA  SS+TELAEKI+W+ AL +A+MLVLSCCES+ S   +      ++  KPCDEIYVVR
Sbjct: 1   MAPISSSTELAEKISWYSALLLALMLVLSCCESAQSHDEIMVRLHKKDAKKPCDEIYVVR 60

Query: 61  EGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR 104
           EGETLHTISEKCGDPYIVE+NPHI+DPDDVFPGLVIKITP+  R
Sbjct: 61  EGETLHTISEKCGDPYIVEENPHIHDPDDVFPGLVIKITPYNYR 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510995|ref|XP_003625786.1| hypothetical protein MTR_7g104250 [Medicago truncatula] gi|355500801|gb|AES82004.1| hypothetical protein MTR_7g104250 [Medicago truncatula]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 76/96 (79%), Gaps = 1/96 (1%)

Query: 10  LAEKIAWHCALFMA-IMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREGETLHTI 68
           +A +I+ +C LF A I+L+L+CCES  S   +    +  N NK CDEIYVVREGETLHTI
Sbjct: 1   MAMRISRYCVLFSAVIILLLNCCESRRSELTVEMKQRIANNNKACDEIYVVREGETLHTI 60

Query: 69  SEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR 104
           SEKCGDP+IVE+NPHI+DPDDVFPGLVIKI PF NR
Sbjct: 61  SEKCGDPFIVEENPHIHDPDDVFPGLVIKINPFTNR 96

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113145|ref|XP_002316406.1| predicted protein [Populus trichocarpa] gi|222865446|gb|EEF02577.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/96 (73%), Positives = 82/96 (85%), Gaps = 3/96 (3%)

Query: 10  LAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNV-NKPCDEIYVVREGETLHTI 68
           +AEKI+W+CAL MA+MLVLSCCE S++   +  V  PR   NKPCDEIYVVREGETL+TI
Sbjct: 1   MAEKISWYCALLMALMLVLSCCEVSETE--LSTVGHPRFFENKPCDEIYVVREGETLNTI 58

Query: 69  SEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR 104
           SEKCGDPYIVE+NPHI+DPDDVFPGLVIKITP  +R
Sbjct: 59  SEKCGDPYIVEENPHIHDPDDVFPGLVIKITPLIDR 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127542|ref|XP_002320100.1| predicted protein [Populus trichocarpa] gi|222860873|gb|EEE98415.1| predicted protein [Populus trichocarpa]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 78/105 (74%), Gaps = 6/105 (5%)

Query: 6   STTELAEKIAWHCAL-FMAIMLVLSCCESS-----DSGGFMGQVTQPRNVNKPCDEIYVV 59
           ++T +A+   W+CAL  +A++L  S  E+S     D       V   + +++PCDEIYVV
Sbjct: 12  TSTSIADAATWYCALVLLALILFTSLREASPTYDDDHHHDFVAVKGNQILDRPCDEIYVV 71

Query: 60  REGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR 104
           +EGETLHTIS+KCGDP+IVE+NPHI+DPDDV+PGLVIKITP ++R
Sbjct: 72  KEGETLHTISDKCGDPFIVEENPHIHDPDDVYPGLVIKITPSRSR 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469318|ref|XP_002270367.1| PREDICTED: uncharacterized protein LOC100255607 [Vitis vinifera]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 72/101 (71%)

Query: 4   ASSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREGE 63
           + S+  +A+  + +CA+ +  +++L+      S      V   + + +PCDEIYVV EGE
Sbjct: 9   SRSSVAVADAASCYCAVILVALILLASVREYSSLPTDESVKGHQLLARPCDEIYVVGEGE 68

Query: 64  TLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR 104
           TLHTIS+KCGDPYIVEQNPHI+DPDDVFPGLVIKITP K R
Sbjct: 69  TLHTISDKCGDPYIVEQNPHIHDPDDVFPGLVIKITPSKQR 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767756|emb|CAN62985.1| hypothetical protein VITISV_027722 [Vitis vinifera]

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 71/101 (70%)

Query: 4   ASSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREGE 63
           + S+  +A+  + +CA+ +  +++L       S      V   + + +PCDEIYVV EGE
Sbjct: 9   SRSSVAVADAASCYCAVILVALILLXSVREYSSLPTDESVKGXQLLARPCDEIYVVGEGE 68

Query: 64  TLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPFKNR 104
           TLHTIS+KCGDPYIVEQNPHI+DPDDVFPGLVIKITP K R
Sbjct: 69  TLHTISDKCGDPYIVEQNPHIHDPDDVFPGLVIKITPSKQR 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520475|ref|XP_003528887.1| PREDICTED: uncharacterized protein LOC100815990 [Glycine max]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 1/96 (1%)

Query: 5   SSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREGET 64
           +S+  +A   +W+CA  +  + +LS  + S S     Q    + +++PC+EIYVV EGET
Sbjct: 14  TSSKAIANAASWYCAFVLVALALLSMFKDS-SMLIPSQYASGQLLSRPCEEIYVVGEGET 72

Query: 65  LHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITP 100
           LHTIS+KCGDP+IVE NPHI+DPDDVFPGLVIKITP
Sbjct: 73  LHTISDKCGDPFIVENNPHIHDPDDVFPGLVIKITP 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:2083293	109	AT3G52790 "AT3G52790" [Arabido	0.923	0.880	0.538	4.2e-24
TAIR|locus:2174093	102	AT5G62150 "AT5G62150" [Arabido	0.884	0.901	0.536	6.1e-23
TAIR|locus:504955292	110	AT4G25433 "AT4G25433" [Arabido	0.875	0.827	0.465	1e-20

TAIR|locus:2083293 AT3G52790 "AT3G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 56/104 (53%), Positives = 76/104 (73%)

Query:     5 SSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGF-MGQVTQPRNV------NKP-CDEI 56
             SS+  +AEKI+W+CA+F A+ML+++  + +  G   + +  QP  +       +P CDEI
Sbjct:     4 SSSMAVAEKISWYCAVFAAMMLLMNSFQVAQEGSTEIVEKQQPSMMITGYSHRRPACDEI 63

Query:    57 YVVREGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITP 100
             Y V+EGETL TISEKCGDPYIVE NPHI+D DD+FPGL+I+ITP
Sbjct:    64 YEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITP 107

GO:0003674 "molecular_function" evidence=ND

GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA;ISS

TAIR|locus:2174093 AT5G62150 "AT5G62150" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 52/97 (53%), Positives = 69/97 (71%)

Query:     6 STTELAEKIAWHCAL-FMAIMLVLSCCESSDSGGFMGQVTQPRNVNKPCDEIYVVREGET 64
             S T  ++  AW  A+  ++++L+LS  E++ S    G         KPC+EIY+V EGET
Sbjct:     4 SRTGSSDMSAWCSAVVLLSLILLLSVRENNASNSIRGSQFS----TKPCEEIYIVGEGET 59

Query:    65 LHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKITPF 101
             LHTI +KCGDP+IVE+NPHI+DPDDVFPGLV+KI PF
Sbjct:    60 LHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPF 96

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0016998 "cell wall macromolecule catabolic process" evidence=ISS

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:504955292 AT4G25433 "AT4G25433" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 47/101 (46%), Positives = 70/101 (69%)

Query:     7 TTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQVTQPRN---------VNKPCDEIY 57
             T   +  +A +C + + I+ +    ++S+ GG  G+  + RN         + +PC+E+Y
Sbjct:     5 TVSRSNTVASYCLVALLILTLAGSVKNSNGGG-SGEYYRGRNCEVWRGKQMMERPCEELY 63

Query:    58 VVREGETLHTISEKCGDPYIVEQNPHINDPDDVFPGLVIKI 98
             VV EG+TLH+ISEKCGDP+IVE+NPHI+DPDDVFPGL+IK+
Sbjct:    64 VVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      104       104   0.00091  102 3  11 22  0.41    30
                                                     29  0.50    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  125 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.56u 0.11s 10.67t   Elapsed:  00:00:01
  Total cpu time:  10.56u 0.11s 10.67t   Elapsed:  00:00:01
  Start:  Mon May 20 17:03:26 2013   End:  Mon May 20 17:03:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
cd00118	45	cd00118, LysM, Lysine Motif is a small domain invo	6e-07
PRK11198	147	PRK11198, PRK11198, LysM domain/BON superfamily pr	1e-06
pfam01476	43	pfam01476, LysM, LysM domain	1e-04
smart00257	44	smart00257, LysM, Lysin motif	0.002
TIGR02899	44	TIGR02899, spore_safA, spore coat assembly protein	0.004

>gnl|CDD|212030 cd00118, LysM, Lysine Motif is a small domain involved in binding peptidoglycan

 Score = 42.1 bits (100), Expect = 6e-07
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 56 IYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKI 98
           Y V+ G+TL +I++K G     +   NP + +PD ++PG  +KI
Sbjct: 2  TYTVKPGDTLWSIAKKYGVTVEELAAANP-LINPDCIYPGQKLKI 45

LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. Length = 45

>gnl|CDD|236880 PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 42  QVTQPRNVNKPCDEIYVVREGETLHTISEKC-GD----PYIVEQN-PHINDPDDVFPGLV 95
           +V  P     P  + Y V+ G+TL  I++K  G+      I E N P +  PD ++PG V
Sbjct: 87  KVATPA----PESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQV 142

Query: 96  IKITP 100
           ++I  
Sbjct: 143 LRIPE 147

Length = 147

>gnl|CDD|144899 pfam01476, LysM, LysM domain

 Score = 36.2 bits (85), Expect = 1e-04
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 4/45 (8%)

Query: 57 YVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKIT 99
          Y V++G+TL +I+++ G     + E N  ++ P +++ G  +KI 
Sbjct: 1  YTVKKGDTLSSIAKRYGITVEELAELN-GLSSP-NLYVGQKLKIP 43

The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. Length = 43

>gnl|CDD|197609 smart00257, LysM, Lysin motif

 Score = 33.2 bits (77), Expect = 0.002
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 56 IYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKI 98
           Y V++G+TL +I+ + G     ++E N  I DPD++  G  +KI
Sbjct: 1  TYTVKKGDTLSSIARRYGISVSDLLELNN-ILDPDNLQVGQKLKI 44

Length = 44

>gnl|CDD|131945 TIGR02899, spore_safA, spore coat assembly protein SafA

 Score = 32.5 bits (74), Expect = 0.004
 Identities = 15/42 (35%), Positives = 31/42 (73%), Gaps = 2/42 (4%)

Query: 59 VREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKI 98
          V++G+TL  I++K G  +  +++ NP +++P+ ++PG+ IKI
Sbjct: 1  VQKGDTLWKIAKKYGVDFDELIQANPQLSNPNLIYPGMKIKI 42

SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins [Cellular processes, Sporulation and germination]. Length = 44

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
PRK10871	319	nlpD lipoprotein NlpD; Provisional	99.64
PRK14125	103	cell division suppressor protein YneA; Provisional	99.54
PF01476	44	LysM: LysM domain; InterPro: IPR018392 This domain	99.54
TIGR02899	44	spore_safA spore coat assembly protein SafA. in wh	99.35
cd00118	46	LysM Lysin domain, found in a variety of enzymes i	99.15
PRK13914	481	invasion associated secreted endopeptidase; Provis	99.14
PRK11198	147	LysM domain/BON superfamily protein; Provisional	99.09
TIGR02907	338	spore_VI_D stage VI sporulation protein D. SpoVID,	98.92
smart00257	44	LysM Lysin motif.	98.88
PRK06347	592	autolysin; Reviewed	98.81
PRK10783	456	mltD membrane-bound lytic murein transglycosylase	98.79
PRK10190	310	L,D-transpeptidase; Provisional	98.73
PRK06347	592	autolysin; Reviewed	98.69
COG1388	124	LytE FOG: LysM repeat [Cell envelope biogenesis, o	98.67
PRK13914	481	invasion associated secreted endopeptidase; Provis	98.67
COG1652	269	XkdP Uncharacterized protein containing LysM domai	98.67
PRK10260	306	L,D-transpeptidase; Provisional	98.63
PRK10783	456	mltD membrane-bound lytic murein transglycosylase	98.48
TIGR03505	74	FimV_core FimV N-terminal domain. This region is f	98.28
PF05489	60	Phage_tail_X: Phage Tail Protein X; InterPro: IPR0	98.06
PF04225	85	OapA: Opacity-associated protein A LysM-like domai	98.05
COG3170	755	FimV Tfp pilus assembly protein FimV [Cell motilit	97.57
COG3858	423	Predicted glycosyl hydrolase [General function pre	96.61
PRK11649	439	putative peptidase; Provisional	96.4
COG4254	339	Uncharacterized protein conserved in bacteria [Fun	95.33
COG3858	423	Predicted glycosyl hydrolase [General function pre	94.97
COG5004	70	P2-like prophage tail protein X [General function	94.42
COG4784	479	Putative Zn-dependent protease [General function p	94.26
COG3061	242	OapA Cell envelope opacity-associated protein A [C	92.82
COG0739	277	NlpD Membrane proteins related to metalloendopepti	88.03
COG5510	44	Predicted small secreted protein [Function unknown	87.44
COG1388	124	LytE FOG: LysM repeat [Cell envelope biogenesis, o	84.97

>PRK10871 nlpD lipoprotein NlpD; Provisional

Probab=99.64  E-value=1.7e-15  Score=114.52  Aligned_cols=95  Identities=19%  Similarity=0.272  Sum_probs=63.2

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccc---C----CCCC----CCCCCCceEEECCCCchHHHH
Q 044600            1 MARASSTTELAEKIAWHCALFMAIMLVLSCCESSDSGGFMGQV---T----QPRN----VNKPCDEIYVVREGETLHTIS   69 (104)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~---~----~~~~----~~~~~~~~y~V~~GDTL~~IA   69 (104)
                      |+-++.+...    ||..+..++ +++|++|++....++++..   +    ....    .......+|+||+|||||.||
T Consensus         1 ~~~~~~~~~~----~~~~~~~~~-~~~l~gCs~~~~~~apv~~~~~~~~~~~r~~~~~~~g~~~~~~y~Vk~GDTL~~IA   75 (319)
T PRK10871          1 MSAGSPKFTV----RRIAALSLV-SLWLAGCSNTSNPPAPVSSVGNGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIA   75 (319)
T ss_pred             CCCCChhHHH----HHHHHHHHH-HHHhhhhcCCCCCCCceeeccccccccccccccccCCCCCCCceEECCCCHHHHHH
Confidence            5555555533    443333332 3348999865555566651   0    0000    111235789999999999999


Q ss_pred             HHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600           70 EKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF  101 (104)
Q Consensus        70 ~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~  101 (104)
                      ++||.+|  |.+.| +|.+|+.|++||+|+||..
T Consensus        76 ~~~g~~~~~La~~N-~l~~p~~I~~GQ~L~i~~~  108 (319)
T PRK10871         76 WITGNDFRDLAQRN-NIQAPYSLNVGQTLQVGNA  108 (319)
T ss_pred             HHHCcCHHHHHHhc-CCCCCccccCCCEEEeCCC
Confidence            9999999  55555 7889999999999999754

>PRK14125 cell division suppressor protein YneA; Provisional

Probab=99.54  E-value=9.8e-14  Score=89.96  Aligned_cols=47  Identities=19%  Similarity=0.260  Sum_probs=36.8

Q ss_pred             CceEEECCCCchHHHHHHcCCh--------H-HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600           54 DEIYVVREGETLHTISEKCGDP--------Y-IVEQNPHINDPDDVFPGLVIKITPF  101 (104)
Q Consensus        54 ~~~y~V~~GDTL~~IA~~~g~~--------~-i~~~N~~l~~~~~l~~Gq~L~ip~~  101 (104)
                      ...|+|++|||||+||++|+.+        + .++.+|++.+ +.|+|||+|+||..
T Consensus        36 ~~~~tV~~GDTLW~IA~~y~~~~~l~~~~~v~~I~~~N~l~~-~~I~~Gq~L~IP~~   91 (103)
T PRK14125         36 YVEITVQEGDTLWALADQYAGKHHMAKNEFIEWVEDVNNLPS-GHIKAGDKLVIPVL   91 (103)
T ss_pred             cEEEEECCCCCHHHHHHHhCCCcCCCHHHHHHHHHHhcCCCC-CcCCCCCEEEEecC
Confidence            4589999999999999999542        2 3344457854 57999999999954

>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []

Probab=99.54  E-value=7.3e-15  Score=80.74  Aligned_cols=42  Identities=33%  Similarity=0.641  Sum_probs=34.6

Q ss_pred             EEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeC
Q 044600           57 YVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKIT   99 (104)
Q Consensus        57 y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip   99 (104)
                      |+|++|||||+||++||+++  +.+.|+++.++ .|.+||+|+||
T Consensus         1 y~V~~gDtl~~IA~~~~~~~~~l~~~N~~~~~~-~l~~G~~l~iP   44 (44)
T PF01476_consen    1 YTVQPGDTLWSIAKRYGISVDELMELNPNIDSD-NLQPGQKLCIP   44 (44)
T ss_dssp             EEE-TT--HHHHHHHTTS-HHHHHHHCCTTHGG-CGGTTEEEEEC
T ss_pred             CEECcCCcHHHHHhhhhhhHhHHHHhcCCCCcc-cCCCCCEEEeC
Confidence            89999999999999999998  99999888554 49999999998

This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.

>TIGR02899 spore_safA spore coat assembly protein SafA

Probab=99.35  E-value=1.6e-12  Score=70.57  Aligned_cols=42  Identities=36%  Similarity=0.835  Sum_probs=37.1

Q ss_pred             ECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCC
Q 044600           59 VREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITP  100 (104)
Q Consensus        59 V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~  100 (104)
                      |++|||||+||++||+++  +.+.|+.+.+++.+++||+|.||.
T Consensus         1 v~~gdtl~~IA~~~~~~~~~l~~~N~~~~~~~~~~~g~~l~ip~   44 (44)
T TIGR02899         1 VQKGDTLWKIAKKYGVDFDELIQANPQLSNPNLIYPGMKIKIPS   44 (44)
T ss_pred             CCCCCCHHHHHHHHCcCHHHHHHHhhcCCCCCCcCCCCEEecCC
Confidence            689999999999999988  888887676677899999999984

in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.

>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation

Probab=99.15  E-value=1.3e-10  Score=61.84  Aligned_cols=43  Identities=33%  Similarity=0.606  Sum_probs=37.8

Q ss_pred             eEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeC
Q 044600           56 IYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKIT   99 (104)
Q Consensus        56 ~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip   99 (104)
                      +|+|++|||+|+||++|++++  +.+.|+. .++..+.+|+.|.||
T Consensus         2 ~~~v~~gdt~~~ia~~~~~~~~~~~~~N~~-~~~~~~~~g~~l~ip   46 (46)
T cd00118           2 TYTVKKGDTLSSIAQRYGISVEELLKLNGL-SDPDNLQVGQKLKIP   46 (46)
T ss_pred             EEEECCCCCHHHHHHHHCcCHHHHHHHcCC-CCccccCCCCEEecC
Confidence            699999999999999999988  7777754 456789999999987

This domain may have a general peptidoglycan binding function.

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=99.14  E-value=2.5e-10  Score=90.42  Aligned_cols=45  Identities=27%  Similarity=0.499  Sum_probs=39.8

Q ss_pred             eEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCCC
Q 044600           56 IYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPFK  102 (104)
Q Consensus        56 ~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~~  102 (104)
                      +|+|++|||||+||++||+++  |.+.| ++. ++.|++||+|+||...
T Consensus        29 tytVq~GDTLw~IA~~ygvtv~~I~~~N-~l~-~~~I~~Gq~L~Ip~~~   75 (481)
T PRK13914         29 TVVVEAGDTLWGIAQSKGTTVDAIKKAN-NLT-TDKIVPGQKLQVNEVA   75 (481)
T ss_pred             eEEECCCCCHHHHHHHHCCCHHHHHHHh-CCC-cccccCCCEEEeCCCC
Confidence            799999999999999999999  77777 674 5789999999999654

>PRK11198 LysM domain/BON superfamily protein; Provisional

Probab=99.09  E-value=2.1e-10  Score=78.44  Aligned_cols=49  Identities=39%  Similarity=0.839  Sum_probs=40.9

Q ss_pred             CCCceEEECCCCchHHHHHHc-CC--hH--HHHhCCC-CCCCCCcCCCCEEEeCC
Q 044600           52 PCDEIYVVREGETLHTISEKC-GD--PY--IVEQNPH-INDPDDVFPGLVIKITP  100 (104)
Q Consensus        52 ~~~~~y~V~~GDTL~~IA~~~-g~--~~--i~~~N~~-l~~~~~l~~Gq~L~ip~  100 (104)
                      +...+|+|++|||||+||++| +.  .|  |.+.|+. +.+++.|+|||+|.||+
T Consensus        93 p~~~~y~Vk~GDTL~~IA~~~~g~~~~~~~I~~~N~~~l~~~~~I~pGq~L~IP~  147 (147)
T PRK11198         93 PESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIPE  147 (147)
T ss_pred             CCCeEEEECCCCCHHHHHHHHcCChhhHHHHHHhhhhcCCCcCCcCcCCEEecCC
Confidence            355789999999999999998 43  45  8888843 67888999999999995

>TIGR02907 spore_VI_D stage VI sporulation protein D

Probab=98.92  E-value=1.8e-09  Score=82.00  Aligned_cols=44  Identities=25%  Similarity=0.452  Sum_probs=39.1

Q ss_pred             CceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeC
Q 044600           54 DEIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKIT   99 (104)
Q Consensus        54 ~~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip   99 (104)
                      ..+|+|++|||||.||++||+++  |.+.| ++. ++.|++||.|.||
T Consensus       293 ~~~YiVq~GDTL~sIAkRYGVSV~~L~r~N-~L~-~~~L~~GQ~L~IP  338 (338)
T TIGR02907       293 LRMCIVQEGDTIETIAERYEISVSQLIRHN-QLE-DFEVNEGQILYIP  338 (338)
T ss_pred             cEEEEECCCCCHHHHHHHHCcCHHHHHHHh-CCC-ccccCCCCEEEeC
Confidence            35899999999999999999999  77777 675 6899999999998

SpoVID, the stage VI sporulation protein D, is restricted to endospore-forming members of the bacteria, all of which are found among the Firmicutes. It is widely distributed but not quite universal in this group. Between well-conserved N-terminal and C-terminal domains is a poorly conserved, low-complexity region of variable length, rich enough in glutamic acid to cause spurious BLAST search results unless a filter is used. The seed alignment for this model was trimmed, in effect, by choosing member sequences in which these regions are relatively short. SpoVID is involved in spore coat assembly by the mother cell compartment late in the process of sporulation.

>smart00257 LysM Lysin motif

Probab=98.88  E-value=5.7e-09  Score=54.66  Aligned_cols=42  Identities=36%  Similarity=0.646  Sum_probs=35.4

Q ss_pred             eEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEe
Q 044600           56 IYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKI   98 (104)
Q Consensus        56 ~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~i   98 (104)
                      +|+|++|||+|+||++|+.+.  +.+.|+.. ++..+.+|+.|+|
T Consensus         1 ~~~v~~gdt~~~ia~~~~~~~~~~~~~N~~~-~~~~~~~g~~l~i   44 (44)
T smart00257        1 TYTVKKGDTLSSIARRYGISVSDLLELNNIL-DPDNLQVGQKLKI   44 (44)
T ss_pred             CeEeCCCCCHHHHHHHhCCCHHHHHHHcCCC-CccccCCCCEEeC
Confidence            489999999999999998887  88888644 5578999999875

>PRK06347 autolysin; Reviewed

Probab=98.81  E-value=5.9e-09  Score=84.69  Aligned_cols=45  Identities=22%  Similarity=0.378  Sum_probs=38.3

Q ss_pred             CCceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeC
Q 044600           53 CDEIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKIT   99 (104)
Q Consensus        53 ~~~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip   99 (104)
                      +..+|+|++|||||.||++||++.  |.+.| ++. ++.|++||+|+|+
T Consensus       546 ~~~~Y~Vk~GDTL~sIA~KygvSv~~L~~~N-~L~-~~~L~~GQ~L~I~  592 (592)
T PRK06347        546 TVKTYTVKKGDSLWAISRQYKTTVDNIKAWN-KLT-SNMIHVGQKLTIK  592 (592)
T ss_pred             cceeeecCCCCcHHHHHHHhCCCHHHHHHhc-CCC-cccCCCCCEEecC
Confidence            356899999999999999999999  65555 675 4689999999985

>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional

Probab=98.79  E-value=1.3e-08  Score=80.63  Aligned_cols=47  Identities=21%  Similarity=0.326  Sum_probs=39.3

Q ss_pred             CCceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600           53 CDEIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF  101 (104)
Q Consensus        53 ~~~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~  101 (104)
                      ...+|+|++|||||+||++||++.  |.+.|+ +... .|+|||+|+|+..
T Consensus       401 ~~~~Y~Vr~GDTL~sIA~kygVtv~~L~~~N~-l~~~-~L~pGq~L~l~v~  449 (456)
T PRK10783        401 DSITYRVRKGDSLSSIAKRHGVNIKDVMRWNS-DTAK-NLQPGDKLTLFVK  449 (456)
T ss_pred             cceeEEeCCCCCHHHHHHHhCCCHHHHHHhcC-CCCC-cCCCCCEEEEecC
Confidence            456899999999999999999999  777775 4344 8999999999743

>PRK10190 L,D-transpeptidase; Provisional

Probab=98.73  E-value=6.2e-08  Score=73.33  Aligned_cols=49  Identities=20%  Similarity=0.182  Sum_probs=42.4

Q ss_pred             CCCceEEECCCC--chHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600           52 PCDEIYVVREGE--TLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF  101 (104)
Q Consensus        52 ~~~~~y~V~~GD--TL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~  101 (104)
                      +...+|+|+++|  +|.+||++|++.+  +.++||++ |++..++|++|.||.+
T Consensus        35 G~~~~~~v~~~~~~~le~iA~~f~~g~~~l~~aNPgv-d~~~p~~G~~i~iP~~   87 (310)
T PRK10190         35 GQSLTVTVPDHNTQPLETFAAQYGQGLSNMLEANPGA-DVFLPKSGSQLTIPQQ   87 (310)
T ss_pred             cceEEEEecCCCCccHHHHHHHhCCCHHHHHHhCCCC-CCCCCCCCCEEEecCc
Confidence            345689999976  5999999999888  99999999 7888899999999963

>PRK06347 autolysin; Reviewed

Probab=98.69  E-value=2.8e-08  Score=80.77  Aligned_cols=47  Identities=21%  Similarity=0.433  Sum_probs=39.7

Q ss_pred             CCceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600           53 CDEIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF  101 (104)
Q Consensus        53 ~~~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~  101 (104)
                      +...|+|++|||||.||++||++.  +.+.| .+.+ +.|++||+|+||..
T Consensus       478 ~~~~YtVk~GDTL~sIAkkygVSv~~L~~~N-~l~s-~~L~~GQ~L~Ip~~  526 (592)
T PRK06347        478 NAKVYTVAKGDSLWRIANNNKVTIANLKSWN-NLKS-DFIYPGQKLKVSAG  526 (592)
T ss_pred             cceeeeecCCCCHHHHHHHHCCCHHHHHHhc-CCCc-ccccCCcEEEEecC
Confidence            456899999999999999999999  66666 5644 68999999999953

>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]

Probab=98.67  E-value=4.1e-08  Score=64.53  Aligned_cols=45  Identities=27%  Similarity=0.448  Sum_probs=38.2

Q ss_pred             CceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCC
Q 044600           54 DEIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITP  100 (104)
Q Consensus        54 ~~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~  100 (104)
                      ..+|+|++|||||.||++|+++.  +.+.| ++.+ +.+++||.|.++.
T Consensus        66 ~~~~~V~~gdtL~~Ia~~~~~tv~~l~~~n-~l~~-~~i~~gq~l~~~~  112 (124)
T COG1388          66 VVTYTVKKGDTLSKIARKYGVTVAELKQLN-NLSS-DKIKVGQKLKLPV  112 (124)
T ss_pred             CceEEEecCCCHHHHHHHhCCCHHHHHHHh-ccCC-CceecCcEEEEec
Confidence            35899999999999999999998  66666 5544 4999999999974

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=98.67  E-value=5.1e-08  Score=77.46  Aligned_cols=48  Identities=21%  Similarity=0.359  Sum_probs=40.9

Q ss_pred             CCCceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600           52 PCDEIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF  101 (104)
Q Consensus        52 ~~~~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~  101 (104)
                      ....+|+|++|||||.||++||+++  |.+.| ++.+ +.|++||+|.||..
T Consensus       197 ~~a~tytVq~GDTL~sIAkrYgVtv~eI~~~N-~l~s-~~L~pGQ~L~Ip~s  246 (481)
T PRK13914        197 QNATTHAVKSGDTIWALSVKYGVSVQDIMSWN-NLSS-SSIYVGQKLAIKQT  246 (481)
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCHHHHHHhc-CCCc-cccCCCCEEEecCC
Confidence            3457899999999999999999999  66666 6754 58999999999964

>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown]

Probab=98.67  E-value=1.4e-08  Score=74.96  Aligned_cols=48  Identities=40%  Similarity=0.671  Sum_probs=41.8

Q ss_pred             eEEECCCCchHHHHHHc-CCh--H--HHHhCCC--CCCCCCcCCCCEEEeCCCCC
Q 044600           56 IYVVREGETLHTISEKC-GDP--Y--IVEQNPH--INDPDDVFPGLVIKITPFKN  103 (104)
Q Consensus        56 ~y~V~~GDTL~~IA~~~-g~~--~--i~~~N~~--l~~~~~l~~Gq~L~ip~~~~  103 (104)
                      +|+|++|||||.||+++ |..  |  |...|..  +.+++.|+|||+|+||...+
T Consensus       212 ~~~v~rgDTl~~is~~~Yg~~~~y~~I~~aNk~~~~~~p~~I~pGq~l~iP~~~~  266 (269)
T COG1652         212 TNTVKRGDTLWQISKKVYGDGVEYRKIAEANKALVLDNPDKIKPGQVLRIPDQLP  266 (269)
T ss_pred             EEEeccCCcccccchhhcCcceEEEeHhhhhhhhccCCCCcCCCcceeeCCCccc
Confidence            89999999999999776 664  4  9999974  89999999999999997654

>PRK10260 L,D-transpeptidase; Provisional

Probab=98.63  E-value=2.3e-07  Score=70.13  Aligned_cols=48  Identities=21%  Similarity=0.285  Sum_probs=41.9

Q ss_pred             CCceEEECCCC--chHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600           53 CDEIYVVREGE--TLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF  101 (104)
Q Consensus        53 ~~~~y~V~~GD--TL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~  101 (104)
                      ...+|+|++||  +|.+||++|++.+  ++++||++ |+...++|++|.||.+
T Consensus        39 ~~~~~~v~~~~~~~le~iA~~f~~g~~~l~~aNPgv-dp~lp~~G~~i~iP~~   90 (306)
T PRK10260         39 QNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGV-DTFLPKGGTVLNIPQQ   90 (306)
T ss_pred             ccEEEEeCCCCCchHHHHHHHhCCCHHHHHHhCcCC-CCCcCCCCCEEEeCCc
Confidence            45689999976  5999999998887  99999998 7888899999999963

>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional

Probab=98.48  E-value=3e-07  Score=72.85  Aligned_cols=46  Identities=22%  Similarity=0.310  Sum_probs=39.2

Q ss_pred             CceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600           54 DEIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF  101 (104)
Q Consensus        54 ~~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~  101 (104)
                      ..+|+|++|||||+||++||++.  +.+.| ++.+ +.|.+||+|.||.+
T Consensus       343 ~~~y~Vk~GDTL~sIA~r~gvs~~~L~~~N-~l~~-~~L~~Gq~L~Ip~~  390 (456)
T PRK10783        343 SRSYKVRSGDTLSGIASRLNVSTKDLQQWN-NLRG-SKLKVGQTLTIGAG  390 (456)
T ss_pred             ceEEEECCCCcHHHHHHHHCcCHHHHHHHc-CCCc-ccCCCCCEEEecCC
Confidence            45799999999999999999998  66666 5644 78999999999964

>TIGR03505 FimV_core FimV N-terminal domain

Probab=98.28  E-value=6.9e-07  Score=54.70  Aligned_cols=39  Identities=18%  Similarity=0.347  Sum_probs=31.5

Q ss_pred             CchHHHHHHc---C-ChH------HHHhCCCC---CCCCCcCCCCEEEeCCC
Q 044600           63 ETLHTISEKC---G-DPY------IVEQNPHI---NDPDDVFPGLVIKITPF  101 (104)
Q Consensus        63 DTL~~IA~~~---g-~~~------i~~~N~~l---~~~~~l~~Gq~L~ip~~  101 (104)
                      ||||+||++|   + ++.      |.++||+.   .+.+.|++|++|+||..
T Consensus         1 DTLw~IA~~~~~~~~~s~~q~m~ai~~aNp~AF~~~nin~L~~G~~L~iP~~   52 (74)
T TIGR03505         1 DTLWGIAQRVRPDNSVSLYQMMLALYRANPDAFIGGNINRLKVGQILRIPSE   52 (74)
T ss_pred             CcHHHHHHHHccCCCCCHHHHHHHHHHHCHHhHhcCChhhcCCCCEEeCCCH
Confidence            8999999999   3 333      88899764   36788999999999963

This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.

>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX

Probab=98.06  E-value=1.2e-05  Score=47.39  Aligned_cols=46  Identities=28%  Similarity=0.489  Sum_probs=36.9

Q ss_pred             eEEECCCCchHHHHHHc-CChH-----HHHhCCCCCCC-CCcCCCCEEEeCCCC
Q 044600           56 IYVVREGETLHTISEKC-GDPY-----IVEQNPHINDP-DDVFPGLVIKITPFK  102 (104)
Q Consensus        56 ~y~V~~GDTL~~IA~~~-g~~~-----i~~~N~~l~~~-~~l~~Gq~L~ip~~~  102 (104)
                      .|+ +.|||+-.|+.+| |..-     ++++||++.+. ..+..|.+|.+|...
T Consensus         3 v~t-~~GDtlD~I~~r~yG~~~~~~e~ll~aNp~La~~~~~lpaG~~I~lP~i~   55 (60)
T PF05489_consen    3 VYT-TQGDTLDLIAYRHYGREDGAVEALLEANPGLADTGPVLPAGTVIILPDIP   55 (60)
T ss_pred             EEE-eCcCcHHHHHHHHhCcHHHHHHHHHHHChhhhhcCCcCCCCCEEECCCCC
Confidence            344 4999999999887 6532     89999999765 578899999999643

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family is found in a family of phage tail proteins. Sequence analysis suggests that they are related to IPR002482 from INTERPRO which suggests a general peptidoglycan binding function.

>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein

Probab=98.05  E-value=4.4e-06  Score=52.28  Aligned_cols=45  Identities=24%  Similarity=0.437  Sum_probs=25.9

Q ss_pred             ceEEECCCCchHHHHHHcCChH-----HHHhCCCCCCCCCcCCCCEEEeC
Q 044600           55 EIYVVREGETLHTISEKCGDPY-----IVEQNPHINDPDDVFPGLVIKIT   99 (104)
Q Consensus        55 ~~y~V~~GDTL~~IA~~~g~~~-----i~~~N~~l~~~~~l~~Gq~L~ip   99 (104)
                      ..|+|++||||..|=+++|++.     +++....-..-..|+|||.|.+-
T Consensus         3 ~~~~V~~GDtLs~iF~~~gls~~dl~~v~~~~~~~k~L~~L~pGq~l~f~   52 (85)
T PF04225_consen    3 QEYTVKSGDTLSTIFRRAGLSASDLYAVLEADGEAKPLTRLKPGQTLEFQ   52 (85)
T ss_dssp             -EEE--TT--HHHHHHHTT--HHHHHHHHHHGGGT--GGG--TT-EEEEE
T ss_pred             cEEEECCCCcHHHHHHHcCCCHHHHHHHHhccCccchHhhCCCCCEEEEE
Confidence            4799999999999999999975     66665222334579999999874

This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.

>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.57  E-value=6e-05  Score=62.41  Aligned_cols=49  Identities=24%  Similarity=0.411  Sum_probs=39.4

Q ss_pred             CCCceEEECCCCchHHHHHHc-C---ChH------HHHhCCCCC---CCCCcCCCCEEEeCC
Q 044600           52 PCDEIYVVREGETLHTISEKC-G---DPY------IVEQNPHIN---DPDDVFPGLVIKITP  100 (104)
Q Consensus        52 ~~~~~y~V~~GDTL~~IA~~~-g---~~~------i~~~N~~l~---~~~~l~~Gq~L~ip~  100 (104)
                      ..+.+|+|++|||||+||.+. +   ++.      +++.||+--   +-+.+++|++|+||.
T Consensus       186 a~g~tyt~~~~Dtl~dIAs~~rp~~~vt~~Q~~lAly~lNP~af~~gni~RLr~GSvLriP~  247 (755)
T COG3170         186 APGDTYTVRSGDTLWDIASRLRPQDHVTVEQMLLALYQLNPQAFVNGNINRLRAGSVLRIPS  247 (755)
T ss_pred             CCCcccccCCcchHHHHHHhhcCcccccHHHHHHHHHhhChhhhcccchhhccccceeeccc
Confidence            456889999999999999887 4   232      889997652   345899999999996

>COG3858 Predicted glycosyl hydrolase [General function prediction only]

Probab=96.61  E-value=0.003  Score=49.79  Aligned_cols=51  Identities=27%  Similarity=0.325  Sum_probs=41.7

Q ss_pred             CCCCceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCCC
Q 044600           51 KPCDEIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPFK  102 (104)
Q Consensus        51 ~~~~~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~~  102 (104)
                      ++...+|.|++||||++||.+++++.  +...|+.+ .+.-+.+|-.+.+|+..
T Consensus        46 ~~~~~~y~~~~~d~~~Sia~~~~vt~~~~~~m~~~~-~~~~l~~~~~l~~P~~~   98 (423)
T COG3858          46 PPSGHFYDVGPGDTLTSIARTVGVTQDSAAIMNFVI-CPGYLQYGLNLYIPSAR   98 (423)
T ss_pred             CCcceEEEecCCcchhhhhhhhcCCHHHHHhhcccc-cccceeeeeEEeccCCC
Confidence            34457899999999999999999987  66667544 56789999999999654

>PRK11649 putative peptidase; Provisional

Probab=96.40  E-value=0.0055  Score=48.67  Aligned_cols=42  Identities=26%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             ceEEECCCCchHHHHHHcCChH-----HHHhCCCCCCCCCcCCCCEEEeC
Q 044600           55 EIYVVREGETLHTISEKCGDPY-----IVEQNPHINDPDDVFPGLVIKIT   99 (104)
Q Consensus        55 ~~y~V~~GDTL~~IA~~~g~~~-----i~~~N~~l~~~~~l~~Gq~L~ip   99 (104)
                      ..|+|++||||..|=+++|++.     +++.+.   +...|+|||.+.+-
T Consensus        96 ~~~~Vk~GDTl~~iL~r~Gi~~~di~~l~~~~~---~L~~Lr~Gq~l~~~  142 (439)
T PRK11649         96 HEYVVSTGDTLSSILNQYGIDMSDISQLAAQDK---ELRNLKIGQQLSWT  142 (439)
T ss_pred             EEEEeCCCCCHHHHHHHcCCCHHHHHHHHHcCh---HhhcCCCCCEEEEE
Confidence            4899999999999999999976     444442   34579999999884

>COG4254 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.33  E-value=0.023  Score=43.23  Aligned_cols=48  Identities=19%  Similarity=0.064  Sum_probs=39.3

Q ss_pred             ceEEECCCCchHHHHHHc-CC--hH-HHHhCCCCCCCCCcCCCCEEEeCCCC
Q 044600           55 EIYVVREGETLHTISEKC-GD--PY-IVEQNPHINDPDDVFPGLVIKITPFK  102 (104)
Q Consensus        55 ~~y~V~~GDTL~~IA~~~-g~--~~-i~~~N~~l~~~~~l~~Gq~L~ip~~~  102 (104)
                      -+|+|+.||||.-++..| ..  .| ..+.-|++.+|..++||..|.||.+.
T Consensus         6 ~~yrv~~gdtli~l~~~yl~~~~g~r~~q~an~~~~P~~l~pgs~l~ip~~~   57 (339)
T COG4254           6 LTYRVLFGDTLILLLGGYLTLLAGSRAAQPANTKRPPFILQPGSCLPIPLPA   57 (339)
T ss_pred             ceeeeccccHHHHHHHHhhhccchhhhhcccccCCCCcccCCCccccCCCcc
Confidence            489999999999999999 43  45 44444588899999999999999653

>COG3858 Predicted glycosyl hydrolase [General function prediction only]

Probab=94.97  E-value=0.015  Score=45.85  Aligned_cols=44  Identities=25%  Similarity=0.324  Sum_probs=37.8

Q ss_pred             eEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600           56 IYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF  101 (104)
Q Consensus        56 ~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~  101 (104)
                      .|.|++||++..|+..|+...  |+..| .+.+ +.+.+||.+.||+.
T Consensus         3 i~~~~pg~~~~~i~~~~~~~~~~i~~~~-~~~~-d~~~~~q~~~v~~~   48 (423)
T COG3858           3 IHLVGPGDSRLIIAVYFPYTNNRIVNGN-DYTN-DDLVDGQTFVVPPS   48 (423)
T ss_pred             EEEccCCceeeeehhhcccccccccccc-cccc-ccccCceeEEECCc
Confidence            689999999999999997765  87666 5656 78999999999974

>COG5004 P2-like prophage tail protein X [General function prediction only]

Probab=94.42  E-value=0.12  Score=30.88  Aligned_cols=47  Identities=26%  Similarity=0.420  Sum_probs=36.5

Q ss_pred             eEEECCCCchHHHHHHc-CC----hH-HHHhCCCCCCCC-CcCCCCEEEeCCCC
Q 044600           56 IYVVREGETLHTISEKC-GD----PY-IVEQNPHINDPD-DVFPGLVIKITPFK  102 (104)
Q Consensus        56 ~y~V~~GDTL~~IA~~~-g~----~~-i~~~N~~l~~~~-~l~~Gq~L~ip~~~  102 (104)
                      .|+...|||+-.++.++ |-    .. ++++||++.+-. .+..|-.|.+|...
T Consensus         4 ~~Rt~~gDtvDalc~~~Ygrt~~v~eavl~ANpGlAd~gp~lp~gl~i~lPD~~   57 (70)
T COG5004           4 IVRTRQGDTVDALCWRVYGRTTGVTEAVLEANPGLADWGPVLPHGLAITLPDIA   57 (70)
T ss_pred             EEEeccCchHHHHHHHHHhhHHHHHHHHHhcCCChhhcCCCCccceeEecCCCC
Confidence            57789999999999887 43    22 999999996533 46679999998643

>COG4784 Putative Zn-dependent protease [General function prediction only]

Probab=94.26  E-value=0.088  Score=41.21  Aligned_cols=45  Identities=20%  Similarity=0.359  Sum_probs=36.3

Q ss_pred             ceEEECCCCchHHHHHHc-CChH---HHHhCCCCCCCCCcCCCCEEEeC
Q 044600           55 EIYVVREGETLHTISEKC-GDPY---IVEQNPHINDPDDVFPGLVIKIT   99 (104)
Q Consensus        55 ~~y~V~~GDTL~~IA~~~-g~~~---i~~~N~~l~~~~~l~~Gq~L~ip   99 (104)
                      ...+||+|||+-++|.+- |.+-   +++.-|.+.....+.||++++|=
T Consensus       429 rvvtVk~GqT~~~lAA~m~G~~rkldlfRllNam~~~a~~~pGd~vKii  477 (479)
T COG4784         429 RVVTVKPGQTMASLAARMMGTDRKLDLFRLLNAMSPGATVRPGDKVKII  477 (479)
T ss_pred             EEEEecCCccHHHHHhhccCchhHHHHHHHHhccCCCCcCCCCCeeeec
Confidence            457899999999999776 7643   66666678777789999999984

>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]

Probab=92.82  E-value=0.28  Score=35.92  Aligned_cols=47  Identities=19%  Similarity=0.213  Sum_probs=33.6

Q ss_pred             CCceEEECCCCchHHHHHHcCChH--HHHh--CCCCC-CCCCcCCCCEEEeC
Q 044600           53 CDEIYVVREGETLHTISEKCGDPY--IVEQ--NPHIN-DPDDVFPGLVIKIT   99 (104)
Q Consensus        53 ~~~~y~V~~GDTL~~IA~~~g~~~--i~~~--N~~l~-~~~~l~~Gq~L~ip   99 (104)
                      ...+|+|+.|+||..+=+.++++.  +.+.  =.+-. .-..++.||.++|-
T Consensus       158 ~wqsy~V~~G~TLaQlFRdn~LpitDVnAMakveGagkpLSnlkaGq~Vki~  209 (242)
T COG3061         158 NWQSYTVPQGKTLAQLFRDNNLPITDVNAMAKVEGAGKPLSNLKAGQKVKIS  209 (242)
T ss_pred             cceeEEecCCccHHHHHhccCCChHHhHHHHhhccCCCchhhccCCCEEEEE
Confidence            567899999999999999998866  2111  11221 12468999999985

>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]

Probab=88.03  E-value=1  Score=32.52  Aligned_cols=45  Identities=22%  Similarity=0.403  Sum_probs=35.3

Q ss_pred             eEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600           56 IYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF  101 (104)
Q Consensus        56 ~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~  101 (104)
                      .|.++.|++|..|+++++...  +.+.|+.. ....+.+|+.+.+|..
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   49 (277)
T COG0739           3 LYVVKKGDTLSAIAARLGISAKDLARLNNLL-KKRLLRIGQLLRVPRA   49 (277)
T ss_pred             eEEecCCCHHHHHHHHcCCCHHHHHHHHhhc-cccccCccceeeeccc
Confidence            689999999999999998877  55555443 3237889999998864

>COG5510 Predicted small secreted protein [Function unknown]

Probab=87.44  E-value=0.45  Score=26.15  Aligned_cols=30  Identities=23%  Similarity=0.243  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCccc
Q 044600           13 KIAWHCALFMAIMLVLSCCESSDSGGFMGQ   42 (104)
Q Consensus        13 ~~~~~~~~~~~~~~~la~~~~~~~~~~~~~   42 (104)
                      +.+...+++++.++++++|.+....+.++.
T Consensus         4 ~t~l~i~~vll~s~llaaCNT~rG~G~DIq   33 (44)
T COG5510           4 KTILLIALVLLASTLLAACNTMRGAGKDIQ   33 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccchhHH
Confidence            445667777888889999987765555544

>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]

Probab=84.97  E-value=0.66  Score=29.98  Aligned_cols=32  Identities=31%  Similarity=0.511  Sum_probs=24.5

Q ss_pred             HHHHcCChH--HHHhCCCCC-CCCCcCCCCEEEeCC
Q 044600           68 ISEKCGDPY--IVEQNPHIN-DPDDVFPGLVIKITP  100 (104)
Q Consensus        68 IA~~~g~~~--i~~~N~~l~-~~~~l~~Gq~L~ip~  100 (104)
                      ||.+|++++  +.+.| .+. +++.+.+||+|.++.
T Consensus         1 ia~~~~~~v~~l~~~n-~~~~~s~~i~~gq~l~~~~   35 (124)
T COG1388           1 IASKYGVSVKALKKAN-ALTGKSDAIKPGQVLKIPG   35 (124)
T ss_pred             CcccccccHHHHHHHh-cccCCCCccccCceEEccC
Confidence            578888888  55555 453 278999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
2l9y_A	167	CVNH-LYSM lectin; carbohydrate, sugar binding prot	1e-04

>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15} Length = 167

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 41  GQVTQPRNVNKPCDE-IYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIK 97
           G                  V++G+TL  I  +    +  I  +N +I + D ++PG V++
Sbjct: 48  GHFRWVSGGGGGGGTATVTVQQGDTLRDIGRRFDCDFHEIARRN-NIQNEDLIYPGQVLQ 106

Query: 98  ITPFKN 103
           +     
Sbjct: 107 VPTKGG 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
1e0g_A	48	Membrane-bound lytic murein transglycosylase D; ce	99.49
2l9y_A	167	CVNH-LYSM lectin; carbohydrate, sugar binding prot	99.48
2djp_A	77	Hypothetical protein SB145; LYSM, structural genom	99.41
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	99.13
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	99.01
4a1k_A	165	Putative L, D-transpeptidase YKUD; transferase, pe	98.92
2gu1_A	361	Zinc peptidase; alpha/beta, beta barrel, structura	98.51
2gu1_A	361	Zinc peptidase; alpha/beta, beta barrel, structura	97.43
3slu_A	371	M23 peptidase domain protein; outer membrane, hydr	97.2
2l9y_A	167	CVNH-LYSM lectin; carbohydrate, sugar binding prot	94.82

>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1

Probab=99.49  E-value=3.2e-14  Score=78.46  Aligned_cols=43  Identities=26%  Similarity=0.469  Sum_probs=39.1

Q ss_pred             ceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCC
Q 044600           55 EIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITP  100 (104)
Q Consensus        55 ~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~  100 (104)
                      .+|+|++|||||+||++||+++  +.+.|+   +++.|++||+|.||.
T Consensus         3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~---~~~~l~~G~~l~ip~   47 (48)
T 1e0g_A            3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS---DTANLQPGDKLTLFV   47 (48)
T ss_dssp             CEEEECTTCCHHHHHHHHTCCHHHHHHHCS---CGGGCCTTEEEECCC
T ss_pred             EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC---CCCcCCcCCEEEEec
Confidence            4799999999999999999998  888886   567899999999995

>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}

Probab=99.48  E-value=3.9e-14  Score=97.67  Aligned_cols=49  Identities=24%  Similarity=0.493  Sum_probs=44.0

Q ss_pred             CCCceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600           52 PCDEIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF  101 (104)
Q Consensus        52 ~~~~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~  101 (104)
                      ....+|+||+|||||.||++||+.|  |.+.| ++.+|+.|+|||+|+||..
T Consensus        60 ~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N-~~~~~~~i~~Gq~L~ip~~  110 (167)
T 2l9y_A           60 GGTATVTVQQGDTLRDIGRRFDCDFHEIARRN-NIQNEDLIYPGQVLQVPTK  110 (167)
T ss_dssp             CSCEEEEECTTCCHHHHHHHTTCCHHHHHHHH-TCCGGGCCCTTEEEEESCC
T ss_pred             CCCceEEECCCCcHHHHHHHcCCCHHHHHHHc-CCCCcccccCCCEEEEcCC
Confidence            3457899999999999999999999  77777 7889999999999999954

>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=9.9e-14  Score=83.93  Aligned_cols=46  Identities=22%  Similarity=0.257  Sum_probs=40.7

Q ss_pred             ceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCCC
Q 044600           55 EIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITPF  101 (104)
Q Consensus        55 ~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~~  101 (104)
                      .+|+|++|||||.||++|++++  |.+.| ++.+++.|++||+|.||..
T Consensus        16 ~~y~V~~GDTL~~IA~~~~~~~~~l~~~N-~l~~~~~l~~Gq~l~iP~~   63 (77)
T 2djp_A           16 LEHQLEPGDTLAGLALKYGVTMEQIKRAN-RLYTNDSIFLKKTLYIPIL   63 (77)
T ss_dssp             EEECCCTTCCHHHHHHHHTCCHHHHHHHH-TCCCSSCGGGSSCEEEEEE
T ss_pred             EEEEECCCCcHHHHHHHHCcCHHHHHHHc-CCCCccccCCCCEEEECCC
Confidence            4699999999999999999998  77887 6767789999999999953

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*

Probab=99.13  E-value=5.2e-11  Score=84.68  Aligned_cols=46  Identities=24%  Similarity=0.359  Sum_probs=41.3

Q ss_pred             ceEEECCCCchHHHHHHcCCh---------H-HHHhCCCCCCCCCcCCCCEEEeCC
Q 044600           55 EIYVVREGETLHTISEKCGDP---------Y-IVEQNPHINDPDDVFPGLVIKITP  100 (104)
Q Consensus        55 ~~y~V~~GDTL~~IA~~~g~~---------~-i~~~N~~l~~~~~l~~Gq~L~ip~  100 (104)
                      ..|+|++|||||.||++||++         . |.+.||++.+++.|++||+|.||.
T Consensus        10 ~~Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~   65 (212)
T 4eby_A           10 ASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPF   65 (212)
T ss_dssp             EEEECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEE
T ss_pred             EEEEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEec
Confidence            369999999999999999876         5 888888997788999999999994

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*

Probab=99.01  E-value=2.2e-10  Score=81.42  Aligned_cols=44  Identities=14%  Similarity=0.285  Sum_probs=38.8

Q ss_pred             ceEEECCCCchHHHH-HHcC--ChH--HHHhCCCCCCCCCcCCCCEEEeCC
Q 044600           55 EIYVVREGETLHTIS-EKCG--DPY--IVEQNPHINDPDDVFPGLVIKITP  100 (104)
Q Consensus        55 ~~y~V~~GDTL~~IA-~~~g--~~~--i~~~N~~l~~~~~l~~Gq~L~ip~  100 (104)
                      .+|+|++|||||.|| ++|+  +++  |.+.|+ + +++.|++||+|.||.
T Consensus        79 ~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~-~-~~~~l~~Gq~L~IP~  127 (212)
T 4eby_A           79 FSYSVRQEDTYERVAISNYANLTTMESLQARNP-F-PATNIPLSATLNVLV  127 (212)
T ss_dssp             EEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCC-S-CTTCCCTTCEEEEEE
T ss_pred             eEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcC-C-CcccCCCCCEEEEcC
Confidence            579999999999999 7998  888  888886 6 568999999999994

>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*

Probab=98.92  E-value=8e-10  Score=75.72  Aligned_cols=44  Identities=25%  Similarity=0.439  Sum_probs=39.2

Q ss_pred             ceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCC
Q 044600           55 EIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITP  100 (104)
Q Consensus        55 ~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~  100 (104)
                      .+|+||+||||++||++|++++  +.++||.+ |+ .+++||.|.||.
T Consensus         3 ~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~v-d~-~l~~g~~i~ip~   48 (165)
T 4a1k_A            3 LTYQVKQGDTLNSIAADFRISTAALLQANPSL-QA-GLTAGQSIVIPG   48 (165)
T ss_dssp             EEEECCTTCCHHHHHHHTTCCHHHHHHHCGGG-GG-CCCTTCEEEETT
T ss_pred             EEEEECCCCCHHHHHHHhCCCHHHHHHhCccC-CC-ccCCCccccCcc
Confidence            3799999999999999999988  99999987 55 478999999985

>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}

Probab=98.51  E-value=2.4e-08  Score=75.55  Aligned_cols=47  Identities=26%  Similarity=0.331  Sum_probs=38.3

Q ss_pred             CceEEECCCCchHHHHHHcCChH--HHHhCCCC---CCCCCcCCCCEEEeCC
Q 044600           54 DEIYVVREGETLHTISEKCGDPY--IVEQNPHI---NDPDDVFPGLVIKITP  100 (104)
Q Consensus        54 ~~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l---~~~~~l~~Gq~L~ip~  100 (104)
                      ...|+|++|||||.|+++||++.  +.+.|+..   .+.+.|++||+|.||.
T Consensus         7 ~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~   58 (361)
T 2gu1_A            7 RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMM   58 (361)
T ss_dssp             CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEE
T ss_pred             ceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEEE
Confidence            45899999999999999999988  66666322   1356899999999984

>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}

Probab=97.43  E-value=4.7e-05  Score=57.42  Aligned_cols=45  Identities=9%  Similarity=0.085  Sum_probs=33.7

Q ss_pred             ceEEECCCCchHHHHHHcCChH--HHHhCCC----CCCCCCcCCCCEEEeC
Q 044600           55 EIYVVREGETLHTISEKCGDPY--IVEQNPH----INDPDDVFPGLVIKIT   99 (104)
Q Consensus        55 ~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~----l~~~~~l~~Gq~L~ip   99 (104)
                      ..|.++.|||||.||++||++.  +.+.|+-    +.-...|++||++.|+
T Consensus       101 ~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~  151 (361)
T 2gu1_A          101 ILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDIL  151 (361)
T ss_dssp             EEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEE
T ss_pred             EEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEE
Confidence            3588999999999999999987  6666522    2111469999999986

>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}

Probab=97.20  E-value=0.00036  Score=53.11  Aligned_cols=46  Identities=15%  Similarity=0.138  Sum_probs=33.8

Q ss_pred             CceEEECCCCchHHHHHHcCChH-----HHHhCCCCCCCCCcCCCCEEEeC
Q 044600           54 DEIYVVREGETLHTISEKCGDPY-----IVEQNPHINDPDDVFPGLVIKIT   99 (104)
Q Consensus        54 ~~~y~V~~GDTL~~IA~~~g~~~-----i~~~N~~l~~~~~l~~Gq~L~ip   99 (104)
                      ...|+|++||||..|-+++|++.     +++......+...|+|||.|.+.
T Consensus        14 W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~   64 (371)
T 3slu_A           14 WVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVL   64 (371)
T ss_dssp             EEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEE
T ss_pred             eEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEE
Confidence            45799999999999999999975     44444333456789999999985

>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}

Probab=94.82  E-value=0.00027  Score=48.21  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=26.3

Q ss_pred             ceEEECCCCchHHHHHHcCChH--HHHhCCCCCCC
Q 044600           55 EIYVVREGETLHTISEKCGDPY--IVEQNPHINDP   87 (104)
Q Consensus        55 ~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~   87 (104)
                      .+|.|++|||||.||++||..+  ++.+|+.|.++
T Consensus       126 ~~~~v~~GdtL~aIA~r~G~~v~s~i~Ln~~I~N~  160 (167)
T 2l9y_A          126 DVRLVDGGKVLEAELRYSGGWNRSRIYLDEHIGNR  160 (167)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEECGGGTEEES
T ss_pred             eEEEeCCcCChHHHHHHcCCceEEEEEcccccCcC
Confidence            5799999999999999998765  66677666443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	104
d1e0ga_	48	d.7.1.1 (A:) Membrane-bound lytic murein transclyc	1e-05
d1y7ma2	48	d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-term	4e-05

>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Length = 48

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (87), Expect = 1e-05
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 57 YVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKI 98
          Y VR+G++L +I+++ G     ++  N   +D  ++ PG  + +
Sbjct: 5  YRVRKGDSLSSIAKRHGVNIKDVMRWN---SDTANLQPGDKLTL 45

>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 48

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Hypothetical protein YkuD, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.0 bits (83), Expect = 4e-05
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 56 IYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKI 98
           Y V++G+TL++I+         +++ NP +     +  G  I I
Sbjct: 3  TYQVKQGDTLNSIAADFRISTAALLQANPSLQAG--LTAGQSIVI 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d1y7ma2	48	Hypothetical protein YkuD, N-terminal domain {Baci	99.57
d1e0ga_	48	Membrane-bound lytic murein transclycosylase D, Ml	99.54

>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Hypothetical protein YkuD, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.57  E-value=4.2e-16  Score=86.05  Aligned_cols=43  Identities=26%  Similarity=0.414  Sum_probs=38.3

Q ss_pred             eEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCC
Q 044600           56 IYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITP  100 (104)
Q Consensus        56 ~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~  100 (104)
                      +|+||+|||||+||++||+++  +.+.|+ +.++ .|++||+|+||.
T Consensus         3 ~y~V~~GDTL~~IA~~y~v~~~~i~~~N~-~~~~-~l~~Gq~L~IPg   47 (48)
T d1y7ma2           3 TYQVKQGDTLNSIAADFRISTAALLQANP-SLQA-GLTAGQSIVIPG   47 (48)
T ss_dssp             EEECCTTCCHHHHHHHTTSCCCCCCCTSC-TTCS-SCCTTCEEEETT
T ss_pred             EEEECCCCCHHHHHHHhCCCHHHHHHHcC-CCCC-CCCCCCEEEeCC
Confidence            699999999999999999998  888886 5454 699999999995

>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=3e-15  Score=82.58  Aligned_cols=43  Identities=23%  Similarity=0.402  Sum_probs=37.8

Q ss_pred             ceEEECCCCchHHHHHHcCChH--HHHhCCCCCCCCCcCCCCEEEeCC
Q 044600           55 EIYVVREGETLHTISEKCGDPY--IVEQNPHINDPDDVFPGLVIKITP  100 (104)
Q Consensus        55 ~~y~V~~GDTL~~IA~~~g~~~--i~~~N~~l~~~~~l~~Gq~L~ip~  100 (104)
                      .+|+|++|||||.||++||+++  |.+.| ++.  +.|+|||+|+||-
T Consensus         3 v~y~V~~GDTl~~IA~~y~vs~~~i~~~N-~l~--~~l~~Gq~L~i~v   47 (48)
T d1e0ga_           3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWN-SDT--ANLQPGDKLTLFV   47 (48)
T ss_dssp             CEEEECTTCCHHHHHHHHTCCHHHHHHHC-SCG--GGCCTTEEEECCC
T ss_pred             EEEEECCCCCHHHHHHHHCCCHHHHHHHc-CCc--ccCcCCCEEEEEe
Confidence            4799999999999999999999  88887 564  3699999999984