Citrus Sinensis ID: 044605

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MEVYRAQLARLRRMETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVFDPREFS
Secondary Structure (PSIPRED)
cccccccHHcccccHHcHHHccccccccEEEEccccccccccccccccccccccccEEEcccccccHHHHHcccccccEEEEccccccccHHHHHHHccccccccHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccEEEEEEccccccccccccccccccEEEEEcccccEEEcccccccccccccccccEEEEccccccccccccccccccEEEEEccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEcccccHHHHccccccccccccccccEEEccEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccHHHHHccccHHcccccEEEcccccccHHcccccccccHHHcEccEEEEcccccccHHHcccHHcccccEEEccccccccHHHHHHHHHHcHHHHHHHcHHHHHHHHHccccccccEEEEEcccccccccHcccccccccEEEEEcccccccccccccccccccEEEEcccccEEEccHHHcccccccccccHcEEEEcccHcHHHccccccccccEEEEcccccHcccccccccccEEEEcccccccccccHHHHcccHHccccccccccHHHHHcccccccccccHcccccccccEEEEcccccccccccccccccHHcccccccEEEEcccccccccccccccccccEEEEcccHHHHHHHHcccccccccEccccEEEEcccEEEccHHcc
Coil and Loop (DISEMBL)
MEVYRAQLARLRRMETINGDFTEIFVIYLILVgdlteskemplrigkltslrTLTKFavgksncsglselrsstLLHEKLTILGLenvnvaedakegnrttssdsrEVAEIQTRVLEMLKphyglkelkvqnyggtkfpawlgqssfENLVVLRFRncnqctslpsvghlpllknLVIKGMGRmakagttggdqqaakgfpclrelsiincsklkgrlpqhfssLERIVIMSCEQLLVSCTtlpllceleidgfgevawinrpveagifdssnpgpeksrtevlpweigspdqeslpeglhklSHITRISIVGSYlvsfpkggleslSFVRNLTSlerlelsrcpilksfpengllpsVVYLSIYlcpdleekckkDEREychlvadipfvqlnhklvfdprefs
Flexible Loop (DISEMBL)
mevyraqlARLRRmetingdftEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKfavgksncsglseLRSSTLLHEKLTILGlenvnvaedakegnrttssdsrevaEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCtslpsvghlplLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEagifdssnpgpeKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIlksfpengllpsVVYLSIYLCPDLEEKCKKDEREYCHLVAdipfvqlnhklvfdprefs
Low Complexity Region (SEG)
MEVYRAQLARLRRMETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVFDPREFS
Disordered region (IsUnstruct)
******QLARLRRMETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNV********************IQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIF******************************LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF******
Disordered Region (DISOPRED)
MEVYRAQLARLRRMETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINR***************KSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVFD*****
Disordered Region (DISEMBL)
MEVYRAQLARLRRMETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAED**************VAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAK*********AAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSN********EVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVFDPREFS
Disordered Region (DISPRO)
MEVYRAQLARLRRMETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVFDPR*F*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVYRAQLARLRRMETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVFDPREFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q7XA39	988	Putative disease resistan	N/A	no	0.844	0.346	0.297	1e-27
Q9LRR4	1054	Putative disease resistan	yes	no	0.503	0.193	0.328	3e-27
Q7XA42	979	Putative disease resistan	N/A	no	0.837	0.346	0.298	6e-25
Q7XA40	992	Putative disease resistan	N/A	no	0.871	0.355	0.296	2e-24
Q7XBQ9	970	Disease resistance protei	N/A	no	0.819	0.342	0.312	3e-24
Q9LRR5	1424	Putative disease resistan	no	no	0.567	0.161	0.301	2e-21

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 178/387 (45%), Gaps = 45/387 (11%)

Query: 42  PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTT 101
           P RIG LT L+TL  F VG      L EL++  L    ++I  LE V    DA E N + 
Sbjct: 613 PPRIGLLTCLKTLGFFIVGSKKGYQLGELKNLNLCG-SISITHLERVKNDTDA-EANLSA 670

Query: 102 SSDSREVA------------EIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFEN 149
            ++ + ++              + +VLE LKPH  LK L++  +GG +FP+W+  S  E 
Sbjct: 671 KANLQSLSMSWDNDGPNRYESKEVKVLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEK 730

Query: 150 LVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMG---RMAKAGTTGGDQQAAKGFPCLREL 206
           ++ +R ++C  C  LP  G LP L+NL ++         +           + FP L++L
Sbjct: 731 VISVRIKSCKNCLCLPPFGELPCLENLELQNGSAEVEYVEEDDVHSRFSTRRSFPSLKKL 790

Query: 207 SIINCSKLKGRLPQH----FSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINR 262
            I     LKG + +     F  LE + I+ C   L    TL  + +LE+ G      ++ 
Sbjct: 791 RIWFFRSLKGLMKEEGEEKFPMLEEMAILYCP--LFVFPTLSSVKKLEVHGNTNTRGLSS 848

Query: 263 PVEAGIFDSSNPG--------PEKSRTEVLPWEIGS----PDQESLPEGLHKLSHITRIS 310
                   S   G        PE+  T +   E  S     + + LP  L  L+ + R+ 
Sbjct: 849 ISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFDFKNLKDLPTSLTSLNALKRLQ 908

Query: 311 IVG-SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGL--LPSVVYLSIYLC 367
           I     L SFP+ GLE       LTSL +L +  C +LK  PE GL  L ++  L +  C
Sbjct: 909 IESCDSLESFPEQGLEG------LTSLTQLFVKYCKMLKCLPE-GLQHLTALTNLGVSGC 961

Query: 368 PDLEEKCKKDEREYCHLVADIPFVQLN 394
           P++E++C K+  E  H +A IP + ++
Sbjct: 962 PEVEKRCDKEIGEDWHKIAHIPNLDIH 988

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.
Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  123 bits (309), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 117/259 (45%), Gaps = 55/259 (21%)

Query: 28  YLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLEN 87
           YL L+G  T+ ++MP R G+L SL+TLT F V  S+ S +SEL     LH KL I+ L+ 
Sbjct: 653 YLDLIG--TKLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQR 710

Query: 88  VNVAEDAKEGNRTTSSDSREV-------------------AEIQTRVLEMLKPHYGLKEL 128
           V    DA E N  +    RE+                    + +  V E L+PH  +++L
Sbjct: 711 VVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKL 770

Query: 129 KVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAG 188
            ++ Y G +FP WL   SF  +V +R R C  CTSLPS+G LP LK L I GM  +   G
Sbjct: 771 AIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIG 830

Query: 189 TTGG--------------------------------DQQAAKG--FPCLRELSIINCSKL 214
                                               D +  +G  FP L++L I+ C +L
Sbjct: 831 RKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRGDLFPSLKKLFILRCPEL 890

Query: 215 KGRLPQHFSSLERIVIMSC 233
            G LP    SL  + I  C
Sbjct: 891 TGTLPTFLPSLISLHIYKC 909

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  115 bits (288), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 177/379 (46%), Gaps = 40/379 (10%)

Query: 42  PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTT 101
           P RIG LT L++L+ F +GK     L EL++  L +  ++I  L+ V    DAKE N + 
Sbjct: 612 PPRIGLLTCLKSLSCFVIGKRKGHQLGELKNLNL-YGSISITKLDRVKKDTDAKEANLSA 670

Query: 102 SSDSREVA---------EIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVV 152
            ++   +             + VLE LKPH  LK L++  +GG + P W+ QS  +N+V 
Sbjct: 671 KANLHSLCLSWDLDGKHRYDSEVLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVS 730

Query: 153 LRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG-FPCLRELSIINC 211
           +R R C  C+ LP  G LP L++L +        A     +     G FP LR+L I + 
Sbjct: 731 IRIRGCENCSCLPPFGELPCLESLEL----HTGSADVEYVEDNVHPGRFPSLRKLVIWDF 786

Query: 212 SKLKGRLP----QHFSSLERIVIMSCEQLLV----SCTTLPLLCELEIDGFGEVAWINRP 263
           S LKG L     + F  LE +    C   ++    S  TL ++   +      ++ +   
Sbjct: 787 SNLKGLLKMEGEKQFPVLEEMTFYWCPMFVIPTLSSVKTLKVIVT-DATVLRSISNLRAL 845

Query: 264 VEAGIFDS--SNPGPE---KSRTEVLPWEIG-SPDQESLPEGLHKLSHITRISI-VGSYL 316
               I D+  +   PE   KS   +   +I    + + LP  L  L+ +  +       L
Sbjct: 846 TSLDISDNVEATSLPEEMFKSLANLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDAL 905

Query: 317 VSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGL--LPSVVYLSIYLCPDLEEKC 374
            S P+ G      V+ LTSL  L +S C +LK  PE GL  L ++  L+I  CP + ++C
Sbjct: 906 ESLPEEG------VKGLTSLTELSVSNCMMLKCLPE-GLQHLTALTTLTITQCPIVFKRC 958

Query: 375 KKDEREYCHLVADIPFVQL 393
           ++   E  H +A IP++ L
Sbjct: 959 ERGIGEDWHKIAHIPYLTL 977

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 176/391 (45%), Gaps = 38/391 (9%)

Query: 31  LVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNV 90
           LV D      MP RIG LT L+TL  F VG+     L ELR+  L    ++I  LE V  
Sbjct: 610 LVLDHCPLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNLNL-RGAISITHLERVKN 668

Query: 91  AEDAKEGNRTTSSD-----------SREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFP 139
             +AKE N +  ++           +R  +E + +VLE LKPH  LK L++ ++ G   P
Sbjct: 669 DMEAKEANLSAKANLHSLSMSWDRPNRYESE-EVKVLEALKPHPNLKYLEIIDFCGFCLP 727

Query: 140 AWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG 199
            W+  S  +N+V +    C  C+ LP  G LP L++L ++  G +             + 
Sbjct: 728 DWMNHSVLKNVVSILISGCENCSCLPPFGELPCLESLELQD-GSVEVEYVEDSGFLTRRR 786

Query: 200 FPCLRELSIINCSKLKG----RLPQHFSSLERIVIMSCEQL----LVSCTTLPLLCELEI 251
           FP LR+L I     LKG    +  + F  LE + I  C       L S   L +  E + 
Sbjct: 787 FPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKISDCPMFVFPTLSSVKKLEIWGEADA 846

Query: 252 DGFGEVAWINRPVEAGIFDSSNPGP-----EKSRTEVLPWEIGSPDQ-ESLPEGLHKLSH 305
            G   ++ ++      IF +           K+   ++   +   +  + LP  L  L++
Sbjct: 847 GGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELPTSLASLNN 906

Query: 306 ITRISIVGSY-LVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGL--LPSVVYL 362
           +  + I   Y L S P+ GLE LS      SL  L +  C +LK  PE GL  L ++  L
Sbjct: 907 LKCLDIRYCYALESLPEEGLEGLS------SLTELFVEHCNMLKCLPE-GLQHLTTLTSL 959

Query: 363 SIYLCPDLEEKCKKDEREYCHLVADIPFVQL 393
            I  CP L ++C+K   E  H ++ IP V +
Sbjct: 960 KIRGCPQLIKRCEKGIGEDWHKISHIPNVNI 990

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 169/378 (44%), Gaps = 46/378 (12%)

Query: 41  MPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRT 100
           MP RIG LT L+TL +F VG+     L EL +  L +  + I  LE V   +DAKE N +
Sbjct: 612 MPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNLNL-YGSIKISHLERVKNDKDAKEANLS 670

Query: 101 TSSDSREVA------------EIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFE 148
              +   ++              + +VLE LKPH  L  LK+  + G   P W+  S  +
Sbjct: 671 AKGNLHSLSMSWNNFGPHIYESEEVKVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLK 730

Query: 149 NLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC------ 202
           N+V +   N   C+ LP  G LP L++L +   G          D     GFP       
Sbjct: 731 NIVSILISNFRNCSCLPPFGDLPCLESLELH-WGSADVEYVEEVDIDVHSGFPTRIRFPS 789

Query: 203 LRELSIINCSKLKGRLP----QHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVA 258
           LR+L I +   LKG L     + F  LE ++I  C  L +S + L  L  L I  + +VA
Sbjct: 790 LRKLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLS-SNLRALTSLRI-CYNKVA 847

Query: 259 WINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISI-VGSYLV 317
             + P E     ++      SR   L         + LP  L  L+ +  + I +   L 
Sbjct: 848 -TSFPEEMFKNLANLKYLTISRCNNL---------KELPTSLASLNALKSLKIQLCCALE 897

Query: 318 SFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGL--LPSVVYLSIYLCPDLEEKCK 375
           S P+ GLE LS      SL  L +  C +LK  PE GL  L ++  L I  CP L ++C+
Sbjct: 898 SLPEEGLEGLS------SLTELFVEHCNMLKCLPE-GLQHLTTLTSLKIRGCPQLIKRCE 950

Query: 376 KDEREYCHLVADIPFVQL 393
           K   E  H ++ IP V +
Sbjct: 951 KGIGEDWHKISHIPNVNI 968

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 123/282 (43%), Gaps = 52/282 (18%)

Query: 8   LARLRRMETINGDFTEIFVIYLI-LVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSG 66
           L+  R + ++     E+  + L+ LVG  T   EMP  I KL SL+ L+ F +G+ + +G
Sbjct: 626 LSNCRDLTSLPKSIAELINLRLLDLVG--TPLVEMPPGIKKLRSLQKLSNFVIGRLSGAG 683

Query: 67  LSELRSSTLLHEKLTILGLENVNVAEDAKE-------------------GNRTTSSDSRE 107
           L EL+  + L   L I  L+NV  A +AK+                   G+         
Sbjct: 684 LHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNA 743

Query: 108 VAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSV 167
           +A  Q  VL ML+PH  LK   +++Y G  FP WLG SSF  +  +   +CN C SLP V
Sbjct: 744 LACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPV 803

Query: 168 GHLPLLKNLVIKGMGRMAKAG---------TTGGDQQAAK-------------------- 198
           G LP LK L I+    + K G         + G   Q+ +                    
Sbjct: 804 GQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELED 863

Query: 199 -GFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVS 239
             FPCL++L I  C  L+ + P+   S   + I  C    VS
Sbjct: 864 GIFPCLQKLIIQRCPSLRKKFPEGLPSSTEVTISDCPLRAVS 905

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.869	0.247	0.329	5e-44
45826061	739	resistance protein [Quercus suber]	0.765	0.419	0.355	1e-43
296090606	1093	unnamed protein product [Vitis vinifera]	0.790	0.292	0.307	3e-37
225448305	1308	PREDICTED: putative disease resistance R	0.804	0.249	0.335	5e-37
224059590	1381	cc-nbs-lrr resistance protein [Populus t	0.896	0.262	0.331	5e-37
296083967	730	unnamed protein product [Vitis vinifera]	0.802	0.445	0.333	2e-36
255556671	1318	Disease resistance protein RPS2, putativ	0.839	0.257	0.310	2e-36
296085123	1278	unnamed protein product [Vitis vinifera]	0.777	0.246	0.320	3e-36
359496871	1284	PREDICTED: putative disease resistance p	0.8	0.252	0.324	1e-35
147805811	1341	hypothetical protein VITISV_006249 [Viti	0.8	0.241	0.324	1e-35

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 141/428 (32%), Positives = 198/428 (46%), Gaps = 76/428 (17%)

Query: 20   DFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNC-SGLSELRSSTLLHE 78
            DF ++F +  + +      + MPL IG L+SL+TL+ F VGK++    + EL     L  
Sbjct: 645  DFGKLFNLRHLNIFGSNLLEGMPLSIGNLSSLQTLSNFVVGKADSFCVIRELGPLVHLRG 704

Query: 79   KLTILGLENVNVAEDAKEGNRTTSSDSREVA-------------EIQTRVLEMLKPHYGL 125
             L I  LENV  A++A++       D  EV              E Q  VL ML+P+  L
Sbjct: 705  TLCISKLENVTKAQEARDSYLYGKQDLNEVVMEWSSNLNESQDEETQLEVLNMLQPNVKL 764

Query: 126  KELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMA 185
            KEL V+ YGGTKFP W+G  SF NLV+LRF NC+ C SLP VG LP LK+L+IKGM  + 
Sbjct: 765  KELTVKCYGGTKFPTWIGDPSFSNLVLLRFENCDNCNSLPPVGQLPFLKDLLIKGMAGVK 824

Query: 186  KAGTTGGDQQAAK--------------------------GFPCLRELSIINCSKLKGRLP 219
              G     +  ++                           F CL +LSII C  L  +LP
Sbjct: 825  SVGREFYGESCSRPFQSLETLHFEDMPRWVNWIPLGVNEAFACLHKLSIIRCHNLVRKLP 884

Query: 220  QHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEV-----AWINRPVEAGI-----F 269
             H  SL+++VI  C  ++VS + LP+LC L I+G   V          P          F
Sbjct: 885  DHLPSLKKLVIHGCWNMVVSVSNLPMLCVLVIEGCKRVECESSVGFGSPYSMAFSKISEF 944

Query: 270  DSSNPGPEKSRTEVLPWEIGSPDQ-----ESLPEGLHKLSHITRISIVGS-YLVSFPKGG 323
             ++  G     ++V   +I   ++     E +PEGLH+L  +  +SI     LVSFP  G
Sbjct: 945  GNATAGLMHGVSKVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPASG 1004

Query: 324  LESLSFVRNLTS--------------------LERLELSRCPILKSFPENGLLPSVVYLS 363
              S+  V  + S                    LERL + RC  +KS     L  ++  L 
Sbjct: 1005 FPSMLKVIQIKSCSGLKSLLPEGTLHSRENACLERLCVVRCDSMKSIARGQLPTTLKKLE 1064

Query: 364  IYLCPDLE 371
            I  C +L+
Sbjct: 1065 ISHCMNLQ 1072

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber]

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 179/374 (47%), Gaps = 64/374 (17%)

Query: 41  MPLRIGKLTSLRTLTKFAVGKSNC-SGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNR 99
           MPL IG LT L+TL+ F VGK++    + EL     L   L I  LENV  A++A++   
Sbjct: 7   MPLSIGNLTCLQTLSNFVVGKADSLCVIRELGPLVHLRGTLCISKLENVTKAQEARDSYL 66

Query: 100 TTSSDSREVA-------------EIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSS 146
               D  EV              E Q  VL ML+P+  LKEL V+ YGGTKFP W+G  S
Sbjct: 67  YGKQDLNEVVMEWSSNLNESEDEETQLEVLNMLQPNVKLKELTVKCYGGTKFPTWIGDPS 126

Query: 147 FENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK-------- 198
           F NLV+LRF NC++C SLP VG LP LK+L+IKGM  +   G     +  ++        
Sbjct: 127 FSNLVLLRFENCDKCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFYGESCSRPFQSLETL 186

Query: 199 ------------------GFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSC 240
                              F CLR+LSII C  L  +LP H  SL+++VI  C  L+VS 
Sbjct: 187 HFENMPRWEKWIPLGVSEAFACLRKLSIIRCHNLVRKLPDHLPSLKKLVIHGCWNLVVSV 246

Query: 241 TTLPLLCELEIDGFGEV-----AWINRPVEAGI-----FDSSNPGPEKSRTEVLPWEIGS 290
           + LP+LC L I+G+  V          P          F     G     ++V   +I  
Sbjct: 247 SNLPMLCVLAIEGYKRVECESSVGFGSPYSMVFSKISEFGHVTAGLMHGVSKVEYLKIVD 306

Query: 291 PDQ-----ESLPEGLHKLSHITRISIVGS-YLVSFPKGGLESLSFVRNLTSLERLELSRC 344
            ++     E +PEGLH+L  +  +SI     LVSFP  G  S+        L+ +++  C
Sbjct: 307 SEKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPASGFPSM--------LKVIQIKSC 358

Query: 345 PILKSFPENGLLPS 358
             LKS    G L S
Sbjct: 359 SGLKSLLPEGTLHS 372

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090606|emb|CBI40990.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 185/403 (45%), Gaps = 83/403 (20%)

Query: 36  TESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAK 95
           T  K+MP ++GKL +L+TL K+ + K N S   EL++   L  +L+ILGLENV     A+
Sbjct: 289 TMLKKMPPKVGKLINLQTLNKYFLSKGNGSQKKELKNLLNLRGELSILGLENVLDLRGAR 348

Query: 96  EGNRTTSSDSREVAEI-------------QTRVLEMLKPHYGLKELKVQNYGGTKFPAWL 142
             N     +  ++  +             +  VL+ L+PH  LK+L ++ YGG+KF  W+
Sbjct: 349 YVNLKEGRNIEDLIMVWSEKFGNSRNERTKIEVLKWLQPHQSLKKLDIRFYGGSKFLNWI 408

Query: 143 GQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTG----------- 191
           G  SF  +V L   NC  CTSLP++G LP LKNLVI+GM  +   G              
Sbjct: 409 GDPSFSKMVYLDLINCKNCTSLPALGGLPFLKNLVIEGMNEVKLIGDEFYGETANPFRAL 468

Query: 192 -------------------GDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMS 232
                              G ++    FPCLREL II C KL   L     SL  + +  
Sbjct: 469 EHLRFEKMPQWKDWLIPKLGHEETQALFPCLRELIIIKCPKLIN-LSHELPSLVTLHVQE 527

Query: 233 CEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPD 292
           C++L +S   LPLL +L + G  ++                               G  +
Sbjct: 528 CQELDISIPRLPLLIKLIVVGLLKMN------------------------------GCYN 557

Query: 293 QESLPEGLHKLSHITRISIVGS-YLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP 351
            E LP  LH L+ +T + I     L+SFP+ GL  +        L RL +  C +    P
Sbjct: 558 LEKLPNALHTLTSLTDLLIHNCPKLLSFPEIGLPPM--------LRRLRVRNCRLRSFVP 609

Query: 352 ENGLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLN 394
             GL  ++  L I  CP L+++C KD+ +    +A IP++Q++
Sbjct: 610 NEGLPATLARLVIRECPVLKKRCLKDKGKDWPKIAHIPYMQID 652

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448305|ref|XP_002265391.1| PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 179/394 (45%), Gaps = 68/394 (17%)

Query: 36   TESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAK 95
            T  KEMP +IG+L SL+TL+ F VGK + + + EL     L  KL+IL L+NV +  DA 
Sbjct: 655  TNVKEMPTQIGRLGSLQTLSTFVVGKHSGARIKELGVLRNLWRKLSILSLQNVVLTMDAH 714

Query: 96   EGN----------RTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQS 145
            E N              SD  + ++ +  VLE LKPH  LKEL ++ YGGT+FP WLG  
Sbjct: 715  EANLEGKEHLDALALEWSDDTDDSQNERVVLENLKPHSKLKELSIKFYGGTRFPDWLGDP 774

Query: 146  SFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA-------- 197
            SF NL+ L   +C  C SLP +G LP L+ L I G   + K G       ++        
Sbjct: 775  SFSNLLALCLSDCKYCLSLPPLGQLPSLEKLYIVGANSVKKVGLEFYGHGSSSCKPFGSL 834

Query: 198  ---------------------KGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQL 236
                                 K FP L+EL I+ C KL GRLP H   L R+ I  CE+L
Sbjct: 835  KTLVFEKMMEWEEWFISASDGKEFPSLQELYIVRCPKLIGRLPSHLPCLTRLEITECEKL 894

Query: 237  LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSP---DQ 293
            + S   +P +            W+++  E  I   S+      ++  +     S      
Sbjct: 895  VASLPVVPAI---------RYMWLSKCDEMVIDQRSDDAELTLQSSFMHMPTHSSFTCPS 945

Query: 294  ESLPEGLHKLSHITRISIVG-SYLVSFPK----------GGLESLS---FVRNLTSLERL 339
            +  P GL  LS +  + I   S++  FP           G  ESL      RN T L  L
Sbjct: 946  DGDPVGLKHLSDLETLCISSLSHVKVFPPRLHKLQIEGLGAPESLPEGMMCRN-TCLVHL 1004

Query: 340  ELSRCPILKSFPE--NGLLPSVVYLSIYLCPDLE 371
             +S CP L SFP    GLL ++  L I+ C  LE
Sbjct: 1005 TISNCPSLVSFPMGCGGLLTTLKVLYIHNCRKLE 1038

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059590|ref|XP_002299922.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847180|gb|EEE84727.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 146/441 (33%), Positives = 211/441 (47%), Gaps = 78/441 (17%)

Query: 2    EVYRAQLARLRRMETIN----GDFTEIFVIYLILVGDLTES-KEMPLRIGKLTSLRTLTK 56
            EV+R Q   LR  + +     G    I + YL + G  T+S +EMP +IG LT+L TL K
Sbjct: 618  EVFRLQTLGLRGCKKLIKLPIGIDNLIDLQYLDISG--TDSLQEMPPQIGNLTNLHTLPK 675

Query: 57   FAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAK---------------EGNRTT 101
            F +GK    G+ EL   + L  +L I GL NV   +D +               E     
Sbjct: 676  FIMGKG--LGIRELMKLSHLQGQLNITGLHNVVDVQDTELAILKEKRGLSELSLEWIHNV 733

Query: 102  SSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQC 161
            +    E  E+Q  +L +L+PH  L++L + +YGGT FP+WLG  SF N+V L+ R C++ 
Sbjct: 734  NGFQSEARELQ--LLNLLEPHQTLQKLSIMSYGGTTFPSWLGDHSFTNMVCLQLRGCHKI 791

Query: 162  TSLPSVGHLPLLKNLVIKGMGRMAKAG--------------------------------T 189
            TSLPS+G LPLL++L IKGM ++   G                                +
Sbjct: 792  TSLPSLGQLPLLRDLSIKGMDKVTTVGAEFLGVGSSVKAFPSLEGLIIEDMLNWKQWSWS 851

Query: 190  TGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCEL 249
             G +Q+    FP LREL+IINC  L G+LP H  S++++ I +C QL+     LP LCEL
Sbjct: 852  NGFNQEEVGEFPYLRELTIINCPMLAGKLPSHLPSVKKLSICNCPQLVALPEILPCLCEL 911

Query: 250  EIDGFGEVAWINR--PVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQES---------LPE 298
             ++G  E    ++  P    +   S  G    R+  L   +   D E            +
Sbjct: 912  IVEGCNEAILNHKSLPSLTTLKVGSITGFFCLRSGFLQAMVALQDLEIENCNDLMYLWLD 971

Query: 299  G--LHKLSHITRISIVG-SYLVSFPK----GGLESL-SFVRNLTSLERLELSRCPILKSF 350
            G  LH+L+ +  + I     LVS  +    G LE L S ++ L SL  L++  CP L SF
Sbjct: 972  GTDLHELASMKHLEIKKFEQLVSLVELEKFGDLEQLPSGLQFLGSLRNLKVDHCPKLVSF 1031

Query: 351  PENGLLPSVVYLSIYLCPDLE 371
            P  GL  ++  L I  C  L+
Sbjct: 1032 P-GGLPYTLQRLEISRCDSLK 1051

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083967|emb|CBI24355.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 175/381 (45%), Gaps = 56/381 (14%)

Query: 36  TESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAK 95
           T  K MP+ + KL +L+TL+ F VGK   S + ELR    L   L+IL LENV  A DA+
Sbjct: 183 TSLKGMPMEMKKLKNLQTLSAFVVGKHYGSSIRELRDLFCLGGTLSILNLENVVDAVDAR 242

Query: 96  EGNRTTSSDSREV--------------AEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAW 141
           E N     +  E+              ++ +  VLE L+PH  LK+L +  Y G+ FP W
Sbjct: 243 EANVKDKKNLDELVLKWKDNDNNIAVDSQNEASVLEHLQPHKKLKKLTIDCYSGSNFPDW 302

Query: 142 LGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTT--GGDQQAAKG 199
           LG+ SF N+V L    C  C  LP +G LP LK+L +     + + G    G D  +AK 
Sbjct: 303 LGEPSFTNMVFLHLSKCKNCPYLPPLGQLPNLKSLSVVHFDAVKRVGAEFYGNDSSSAKP 362

Query: 200 ---------------------------FPCLRELSIINCSKLKGRLPQHFSSLERIVIMS 232
                                      FPCL++L I  C KL   LP   SSL ++ I  
Sbjct: 363 FGSLETLMFEEMPEWEEWVPLRIQGEEFPCLQKLCIRKCPKLTRDLPCRLSSLRQLEISE 422

Query: 233 CEQLLVSCTTLP-LLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSP 291
           C QL+VS  T+P +   L       +  +  P       S   G +  R+ V       P
Sbjct: 423 CRQLVVSLPTVPSIFSSLSASKIFNMTHL--PGGQITTSSIQVGLQHLRSLVELHLCNCP 480

Query: 292 DQESLPEGLHKLSHITRISIVGS-YLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSF 350
             + LP  LH L+ + R+ I     L S P+ GL S+        LERLE+  C IL+SF
Sbjct: 481 RLKELPPILHMLTSLKRLEIRQCPSLYSLPEMGLPSM--------LERLEIGGCDILQSF 532

Query: 351 PENGLLPSVVYLSIYLCPDLE 371
           P  G    + YL+I+ C +LE
Sbjct: 533 PL-GFFTKLKYLNIWNCENLE 552

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556671|ref|XP_002519369.1| Disease resistance protein RPS2, putative [Ricinus communis] gi|223541436|gb|EEF42986.1| Disease resistance protein RPS2, putative [Ricinus communis]

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/409 (31%), Positives = 189/409 (46%), Gaps = 69/409 (16%)

Query: 8    LARLRRMETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGL 67
            L +LRR+  ++     +  +  + + +  + +E+PL IGKL +LRTLTKF VG S  S L
Sbjct: 599  LPKLRRLRVLSLSIVNLINLRHLDITNTKQLRELPLLIGKLKNLRTLTKFMVGNSAGSKL 658

Query: 68   SELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDSRE---------------VAEIQ 112
            +ELR    L  KLTI GL NV    DA   N     D +E               V  + 
Sbjct: 659  TELRDMLRLRGKLTITGLHNVENVFDAGGANLQFKHDLQELVMKWSSNNEFQNERVETLD 718

Query: 113  TRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPL 172
              VL+ML+PH  LK LK++ Y G  FP+W+G  SF NL  L  +NC +C+SLPS+G LP 
Sbjct: 719  IDVLDMLQPHKNLKALKIEFYAGVTFPSWIGHPSFSNLNGLTLKNCTKCSSLPSLGRLPF 778

Query: 173  LKNLVIKGMGRMAKAG-------------------------------TTGGDQQAAKGFP 201
            L++L I+GM  +   G                               +   ++     FP
Sbjct: 779  LEDLCIEGMHSLKSIGLEFYGEDSSFTPFPFLKILTFSDMLEWEDWCSAIPEEAFVSEFP 838

Query: 202  CLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAW-- 259
             L EL I NC KL  RLP +  SL ++ I  C  L V  +    LC++ ++   E A   
Sbjct: 839  SLCELCIRNCPKLVRRLPNYLPSLRKLDISKCPCLEVEFSRPSSLCDVNLEECKETAVTS 898

Query: 260  INRPVEAGIFD-------SSNPGPEKSRTEVLPWE----IGSPDQESLPE-GLHK-LSHI 306
            +   + + +F+       + N  PE+     L  +    I   +  +L + G H  LS +
Sbjct: 899  VVNLISSTLFNLQLRGISNFNQFPERVVQSSLALKVMNIINCSELTTLRQAGDHMLLSRL 958

Query: 307  TRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENG 354
             ++ +   + L   P G       + + TSL  L++ RCP + SFPE G
Sbjct: 959  EKLELCNCNNLKELPDG-------LFSFTSLADLKIKRCPKILSFPEPG 1000

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085123|emb|CBI28618.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 177/377 (46%), Gaps = 62/377 (16%)

Query: 41  MPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRT 100
           MP+ +GKLTSL+TL+ F VGK   SG+ +L+S + L  KL+I GL+NV    DA E    
Sbjct: 563 MPVDMGKLTSLQTLSNFVVGKGRGSGIGQLKSLSNLRGKLSISGLQNVVNVRDAIEAKLE 622

Query: 101 TSS-------------DSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSF 147
                           D     +++  +L+ML+PH  LK L ++ YGGT+FP+W+G  SF
Sbjct: 623 DKEYLEKLVLEWIGIFDGTRDEKVENEILDMLQPHENLKNLSIEYYGGTEFPSWVGDPSF 682

Query: 148 ENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTT--GGDQQA--------- 196
             +  L  + C +C SLPS+G LPLLK L+I+GM  +   G    G D  +         
Sbjct: 683 SKMEYLNLKGCKKCISLPSLGQLPLLKELIIEGMDGIKHVGPQFYGDDYSSIDPFQSLET 742

Query: 197 -------------------AKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLL 237
                               +GFPCLRELSI  C KL  +LP +  SLE + I  CE+L 
Sbjct: 743 LKFENIEEWEEWSSFGDGGVEGFPCLRELSIFKCPKLTSKLPNYLPSLEGVWIDDCEKLA 802

Query: 238 VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLP 297
           V    + LL    +    E+      + +  F   N   + S  ++ P        E   
Sbjct: 803 VLPKLVKLLNLDLLGSNVEILGTMVDLRSLTFLQIN---QISTLKIFP--------EGFM 851

Query: 298 EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE--NGL 355
           +   KL  +  ++      +S  + GL       +L SL RL +S CP L + P+  N +
Sbjct: 852 QQSAKLEELKIVNCGDLVALSNQQLGLA------HLASLRRLTISGCPKLVALPDEVNKM 905

Query: 356 LPSVVYLSIYLCPDLEE 372
            P +  L I  C +LE+
Sbjct: 906 PPRLESLDIKDCHNLEK 922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496871|ref|XP_002269699.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/388 (32%), Positives = 177/388 (45%), Gaps = 64/388 (16%)

Query: 36  TESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAK 95
           T+ + MP+ I  L  LR LT + VGK   + L ELR    L   L+IL L+NV V  D  
Sbjct: 604 TKIEGMPMGINGLKGLRRLTTYVVGKHGGARLGELRDLAHLQGALSILNLQNV-VPTDDI 662

Query: 96  EGNRTTSSDSRE------------VAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLG 143
           E N     D  +            V+EIQT+VLE L+PH  +K L ++ + G KFP WL 
Sbjct: 663 EVNLMKKEDLDDLVFAWDPNAIVRVSEIQTKVLEKLQPHNKVKRLSIECFYGIKFPKWLE 722

Query: 144 QSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTT-GGDQQAAKG--- 199
             SF NLV LR R C +C SLP +G L  LK+L I  M  + K G    G+   +     
Sbjct: 723 DPSFMNLVFLRLRGCKKCLSLPPLGQLQSLKDLCIVKMANVRKVGVELYGNSYCSPTSIK 782

Query: 200 -------------------------FPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCE 234
                                    FPCL+EL I  C KLK  LP+H   L ++ I  C+
Sbjct: 783 PFGSLEILRFEGMSKWEEWVCREIEFPCLKELCIKKCPKLKKDLPKHLPKLTKLEIRECQ 842

Query: 235 QLLVSCTTLPLLCELEIDGFGEV-----------AWINRPVEAGIFDSSNPGPEKSRTEV 283
           +L+      P + ELE++   +V           A ++      I D+   G   S   +
Sbjct: 843 ELVCCLPMAPSIRELELEKCDDVVVRSAGSLTSLASLDIRNVCKIPDADELGQLNSLVRL 902

Query: 284 LPWEIGSPDQESLPEGLHKLSHITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELS 342
                G P+ + +P  LH L+ + +++I     L SFP+  L  +        LERL + 
Sbjct: 903 --GVCGCPELKEIPPILHSLTSLKKLNIEDCESLASFPEMALPPM--------LERLRIC 952

Query: 343 RCPILKSFPENGLLPSVVYLSIYLCPDL 370
            CPIL+S PE     ++ +LSI  C  L
Sbjct: 953 SCPILESLPEMQNNTTLQHLSIDYCDSL 980

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805811|emb|CAN60543.1| hypothetical protein VITISV_006249 [Vitis vinifera]

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/388 (32%), Positives = 177/388 (45%), Gaps = 64/388 (16%)

Query: 36   TESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAK 95
            T+ + MP+ I  L  LR LT + VGK   + L ELR    L   L+IL L+NV V  D  
Sbjct: 661  TKIEGMPMGINGLKGLRRLTTYVVGKHGGARLGELRDLAHLQGALSILNLQNV-VPTDDI 719

Query: 96   EGNRTTSSDSRE------------VAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLG 143
            E N     D  +            V+EIQT+VLE L+PH  +K L ++ + G KFP WL 
Sbjct: 720  EVNLMKKEDLDDLVFAWDPNAIVRVSEIQTKVLEKLQPHNKVKRLSIECFYGIKFPKWLE 779

Query: 144  QSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTT-GGDQQAAKG--- 199
              SF NLV LR R C +C SLP +G L  LK+L I  M  + K G    G+   +     
Sbjct: 780  DPSFMNLVFLRLRGCKKCLSLPPLGQLQSLKDLCIVKMANVRKVGVELYGNSYCSPTSIK 839

Query: 200  -------------------------FPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCE 234
                                     FPCL+EL I  C KLK  LP+H   L ++ I  C+
Sbjct: 840  PFGSLEILRFEGMSKWEEWVCREIEFPCLKELCIKKCPKLKKDLPKHLPKLTKLEIRECQ 899

Query: 235  QLLVSCTTLPLLCELEIDGFGEV-----------AWINRPVEAGIFDSSNPGPEKSRTEV 283
            +L+      P + ELE++   +V           A ++      I D+   G   S   +
Sbjct: 900  ELVCCLPMAPSIRELELEKCDDVVVRSAGSLTSLASLDIRNVCKIPDADELGQLNSLVRL 959

Query: 284  LPWEIGSPDQESLPEGLHKLSHITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELS 342
                 G P+ + +P  LH L+ + +++I     L SFP+  L  +        LERL + 
Sbjct: 960  --GVCGCPELKEIPPILHSLTSLKKLNIEDCESLASFPEMALPPM--------LERLRIC 1009

Query: 343  RCPILKSFPENGLLPSVVYLSIYLCPDL 370
             CPIL+S PE     ++ +LSI  C  L
Sbjct: 1010 SCPILESLPEMQNNTTLQHLSIDYCDSL 1037

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.646	0.248	0.268	3.1e-23
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.434	0.123	0.312	1.6e-18
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.622	0.139	0.253	7.6e-07
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.760	0.155	0.257	5.6e-05

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
 Identities = 78/291 (26%), Positives = 126/291 (43%)

Query:   112 QTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLP 171
             +  V E L+PH  +++L ++ Y G +FP WL   SF  +V +R R C  CTSLPS+G LP
Sbjct:   754 EAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLP 813

Query:   172 LLKNLVIKGMGRMAKAGTTG--GDQQAA----KGFPCLRELSIINCSK----LKGRLPQH 221
              LK L I GM  +   G      DQQ      + F  L  L   N       L  R+ + 
Sbjct:   814 CLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG 873

Query:   222 --FSSLERIVIMSCEQLLVSCTT-LPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEK 278
               F SL+++ I+ C +L  +  T LP L  L I             + G+ D      E 
Sbjct:   874 DLFPSLKKLFILRCPELTGTLPTFLPSLISLHI------------YKCGLLDFQPDHHEY 921

Query:   279 SRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLER 338
             S   +    I S     +   L+  +++ ++ +      S     L +   +R   +L  
Sbjct:   922 SYRNLQTLSIKSSCDTLVKFPLNHFANLDKLEV--DQCTSLYSLELSN-EHLRGPNALRN 978

Query:   339 LELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIP 389
             L ++ C  L+  P+   LP  + ++I  C  L +  ++ + +Y H    +P
Sbjct:   979 LRINDCQNLQLLPKLNALPQNLQVTITNCRYLRQPMEQ-QPQYHHPQFHLP 1028

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
 Identities = 64/205 (31%), Positives = 94/205 (45%)

Query:   112 QTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLP 171
             Q  VL ML+PH  LK   +++Y G  FP WLG SSF  +  +   +CN C SLP VG LP
Sbjct:   748 QKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLP 807

Query:   172 LLKNLVIKGMGRMAKAGTTG--GDQQAAKGFPCLRELSIIN-----------CSKLKGRL 218
              LK L I+    + K G     G+  + +G P  + L I+            C +L+  +
Sbjct:   808 SLKYLSIEKFNILQKVGLDFFFGENNS-RGVP-FQSLQILKFYGMPRWDEWICPELEDGI 865

Query:   219 PQHFSSLERIVIMSCEQL-------LVSCTTLPLL-CELEIDGFGEVAWINRPVEAGIFD 270
                F  L++++I  C  L       L S T + +  C L     GE ++  R +   I +
Sbjct:   866 ---FPCLQKLIIQRCPSLRKKFPEGLPSSTEVTISDCPLRAVSGGENSF-RRSL-TNIPE 920

Query:   271 SSNPGPEKSRTEVLPWEIGSPDQES 295
             S    P  SR E L    G+P  ++
Sbjct:   921 SPASIPSMSRRE-LSSPTGNPKSDA 944

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 125 (49.1 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
 Identities = 70/276 (25%), Positives = 110/276 (39%)

Query:   102 SSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQC 161
             S+ S E+A   + VLE L+PH+GLK L++  Y G+  P WL  SS   L  L    C + 
Sbjct:   924 SNISSELAS--SEVLEGLEPHHGLKYLRISGYNGSTSPTWL-PSSLTCLQTLHLEKCGKW 980

Query:   162 TSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQH 221
               LP +  L LL  LV+  M    +      ++      P L   S   C+ ++      
Sbjct:   981 QILP-LERLGLLVKLVLIKMRNATELSIPSLEELVLIALPSLNTCS---CTSIRNLN--- 1033

Query:   222 FSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRT 281
              SSL+ + I +C  L V      +  + EI+     +W+    +  I++        S  
Sbjct:  1034 -SSLKVLKIKNCPVLKVF-PLFEISQKFEIERTS--SWLPHLSKLTIYNCPLSCVHSSLP 1089

Query:   282 EVLPWEIGSPDQESLPEGL-----HKLSHITRISIVGSYLVSFPK----GGLESLSF-VR 331
                    G   + +LP+ L     H+ S  T        L    K    G    +S  + 
Sbjct:  1090 PSAISGYGEYGRCTLPQSLEELYIHEYSQETLQPCFSGNLTLLRKLHVLGNSNLVSLQLH 1149

Query:   332 NLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLC 367
             + T+LE L +  C  L S     LL ++  L  + C
Sbjct:  1150 SCTALEELIIQSCESLSSLDGLQLLGNLRLLRAHRC 1185

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 89/346 (25%), Positives = 147/346 (42%)

Query:    40 EMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVN--VAEDAKEG 97
             E+P  +G  T+L+ L    +G  NCS L EL SS      L  L L N +  V   +  G
Sbjct:   797 ELPF-MGNATNLQNLD---LG--NCSSLVELPSSIGNAINLQNLDLSNCSSLVKLPSFIG 850

Query:    98 NRTTSS--DSREVAEIQTRVLEMLKPHYGLKELKVQNYGG-TKFPAWLGQSSFENLVVLR 154
             N T     D R+ + +   +   +     L  L +       + P+ +G  S   L VL 
Sbjct:   851 NATNLEILDLRKCSSL-VEIPTSIGHVTNLWRLDLSGCSSLVELPSSVGNIS--ELQVLN 907

Query:   155 FRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSK 213
               NC+    LPS  GH   L  L + G   + +  ++ G+         L+EL++ NCS 
Sbjct:   908 LHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIGN------ITNLQELNLCNCSN 961

Query:   214 LKGRLPQHFSSLERIVIMS---CEQL--LVSCTTLPLLCELEIDG---FGEVAWINRPVE 265
             L  +LP    +L  +  +S   C++L  L S   L  L  L++     F     I+  +E
Sbjct:   962 LV-KLPSSIGNLHLLFTLSLARCQKLEALPSNINLKSLERLDLTDCSQFKSFPEISTNIE 1020

Query:   266 AGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLE 325
                 D +    E+  + +  W   +    S  E L + SH+  + I+ ++L  F +   E
Sbjct:  1021 CLYLDGT--AVEEVPSSIKSWSRLTVLHMSYFEKLKEFSHV--LDII-TWL-EFGEDIQE 1074

Query:   326 SLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLE 371
                +++ ++ L  L L +C  L S P+  L  S+  ++   C  LE
Sbjct:  1075 VAPWIKEISRLHGLRLYKCRKLLSLPQ--LPESLSIINAEGCESLE 1118


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      405       405    0.0010  117 3  11 22  0.40    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  243 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  32.68u 0.11s 32.79t   Elapsed:  00:00:01
  Total cpu time:  32.68u 0.11s 32.79t   Elapsed:  00:00:01
  Start:  Fri May 10 02:04:56 2013   End:  Fri May 10 02:04:57 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.72
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.7
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.63
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.62
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.57
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.51
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.48
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.47
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.31
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.26
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.19
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.06
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.0
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.74
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.54
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.54
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.39
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.34
PRK15386	426	type III secretion protein GogB; Provisional	98.21
KOG4341	483	consensus F-box protein containing LRR [General fu	98.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.8
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.8
PRK15386	426	type III secretion protein GogB; Provisional	97.76
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.53
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.51
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.51
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.5
KOG4341	483	consensus F-box protein containing LRR [General fu	97.4
PLN03150	623	hypothetical protein; Provisional	97.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.3
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.0
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.99
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.98
PLN03150	623	hypothetical protein; Provisional	96.85
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.72
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.64
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.5
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.27
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.98
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.9
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.8
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.58
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.52
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.06
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.58
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.45
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.28
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.52
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.28
smart00370	26	LRR Leucine-rich repeats, outliers.	91.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	90.94
smart00370	26	LRR Leucine-rich repeats, outliers.	90.78
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.78
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.86
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.09
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.27
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	86.21
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	84.29
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	83.69
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	82.33
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	80.6

>PLN03210 Resistant to P

Probab=99.83  E-value=1.7e-19  Score=194.95  Aligned_cols=300  Identities=19%  Similarity=0.209  Sum_probs=187.1

Q ss_pred             ccCchhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhh
Q 044605           17 INGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKE   96 (405)
Q Consensus        17 l~~~~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~   96 (405)
                      +|+++......|++|++.++.++.+|..+ ...+|+.|++....-  .........+.+|+ .+.+.........     
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l--~~L~~~~~~l~~Lk-~L~Ls~~~~l~~i-----  650 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKL--EKLWDGVHSLTGLR-NIDLRGSKNLKEI-----  650 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccc--cccccccccCCCCC-EEECCCCCCcCcC-----
Confidence            34444444567888888888888888877 567888876432211  11122334555565 6666543322211     


Q ss_pred             cccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeC-CCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccE
Q 044605           97 GNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYG-GTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKN  175 (405)
Q Consensus        97 ~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~  175 (405)
                                          ..+..+++|+.|++.+|. ...+|..+.  .+++|+.|++++|..++.+|.-..+++|+.
T Consensus       651 --------------------p~ls~l~~Le~L~L~~c~~L~~lp~si~--~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~  708 (1153)
T PLN03210        651 --------------------PDLSMATNLETLKLSDCSSLVELPSSIQ--YLNKLEDLDMSRCENLEILPTGINLKSLYR  708 (1153)
T ss_pred             --------------------CccccCCcccEEEecCCCCccccchhhh--ccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence                                123446778888887764 456677666  778888888888887777776557788888


Q ss_pred             EeecCCCCCeeeCCC-C--------C-C---CCCCCCCCcccEEeeccCcccc--c---cC----CCCCCcccEEEEecc
Q 044605          176 LVIKGMGRMAKAGTT-G--------G-D---QQAAKGFPCLRELSIINCSKLK--G---RL----PQHFSSLERIVIMSC  233 (405)
Q Consensus       176 L~l~~~~~l~~~~~~-~--------~-~---~~~~~~~~~L~~L~l~~~~~l~--~---~l----~~~~~~L~~L~l~~c  233 (405)
                      |++.+|..++.++.. .        + .   ......+++|++|.+.++....  +   .+    ...+++|+.|++++|
T Consensus       709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n  788 (1153)
T PLN03210        709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI  788 (1153)
T ss_pred             EeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence            888887766555430 0        0 0   0001124455555554432110  0   00    012467888888777


Q ss_pred             CC---ccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccE
Q 044605          234 EQ---LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITR  308 (405)
Q Consensus       234 ~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~  308 (405)
                      +.   +|..+..+++|+.|++++|..++    .+|...  .+++|  +++++|..+         +.+|.   ..++|+.
T Consensus       789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~----~LP~~~--~L~sL~~L~Ls~c~~L---------~~~p~---~~~nL~~  850 (1153)
T PLN03210        789 PSLVELPSSIQNLHKLEHLEIENCINLE----TLPTGI--NLESLESLDLSGCSRL---------RTFPD---ISTNISD  850 (1153)
T ss_pred             CCccccChhhhCCCCCCEEECCCCCCcC----eeCCCC--CccccCEEECCCCCcc---------ccccc---cccccCE
Confidence            53   46777778888888888887776    665533  45666  777777554         34443   2356777


Q ss_pred             EEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCcchHH
Q 044605          309 ISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEE  372 (405)
Q Consensus       309 L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~  372 (405)
                      |+++++.++.+|..       +..+++|+.|++++|+.++.+|.. ..+++|+.+++.+|+.++.
T Consensus       851 L~Ls~n~i~~iP~s-------i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        851 LNLSRTGIEEVPWW-------IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             eECCCCCCccChHH-------HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            77777777777765       567778888888888888877765 4456778888888877753

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=5.4e-20  Score=197.62  Aligned_cols=59  Identities=15%  Similarity=0.075  Sum_probs=35.3

Q ss_pred             heeeEEEEEccCCCCc-cCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605           24 IFVIYLILVGDLTESK-EMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG   84 (405)
Q Consensus        24 ~~~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~   84 (405)
                      .+++|++|++++|.+. .+|..++++.+|++|++..... ....+..++.+.+|+ .|.+..
T Consensus       186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~-~L~L~~  245 (968)
T PLN00113        186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL-SGEIPYEIGGLTSLN-HLDLVY  245 (968)
T ss_pred             hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc-CCcCChhHhcCCCCC-EEECcC
Confidence            4567788888877765 5677777777777776432221 122344455555555 555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=3.4e-20  Score=199.19  Aligned_cols=219  Identities=16%  Similarity=0.101  Sum_probs=115.5

Q ss_pred             eeeEEEEEccCCCCc-cCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccccc
Q 044605           25 FVIYLILVGDLTESK-EMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSS  103 (405)
Q Consensus        25 ~~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~  103 (405)
                      +++|++|++++|.++ .+|..++++.+|++|++....- ....+..++++.+|+ +|.+....-.... ......+..++
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~l~~L~-~L~L~~n~l~~~~-p~~l~~l~~L~  215 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-VGKIPNSLTNLTSLE-FLTLASNQLVGQI-PRELGQMKSLK  215 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-cccCChhhhhCcCCC-eeeccCCCCcCcC-ChHHcCcCCcc
Confidence            567888888888776 5777788888888887533221 122334455666666 6666443211111 11122222222


Q ss_pred             CC-hhhHHHHHHHhccCCCCCCccEEEEEeeCC-CCCCcccCCCCCCCccEEEEEcCCCCCcCC-CCCCCCCccEEeecC
Q 044605          104 DS-REVAEIQTRVLEMLKPHYGLKELKVQNYGG-TKFPAWLGQSSFENLVVLRFRNCNQCTSLP-SVGHLPLLKNLVIKG  180 (405)
Q Consensus       104 ~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~  180 (405)
                      .. ...+.........+..+++|+.|++.+|.. ..+|..+.  .+++|+.|++++|.....+| .+..+++|++|++.+
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  293 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD  293 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh--CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence            21 011111122334455667777777776653 34566555  66777777777766333444 366677777777766


Q ss_pred             CCCCeeeCC-CCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC---CccccCCCCCCcceEEEcC
Q 044605          181 MGRMAKAGT-TGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE---QLLVSCTTLPLLCELEIDG  253 (405)
Q Consensus       181 ~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~---~l~~~l~~l~~L~~L~l~~  253 (405)
                      |.....++. ++       .+++|++|+++++ .+.+.+|.   .+++|+.|++++|.   .+|..+..+++|+.|++++
T Consensus       294 n~l~~~~p~~~~-------~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        294 NSLSGEIPELVI-------QLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST  365 (968)
T ss_pred             CeeccCCChhHc-------CCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence            543333332 22       2556666666554 22223332   45566666665543   2344455556666666665


Q ss_pred             cCC
Q 044605          254 FGE  256 (405)
Q Consensus       254 ~~~  256 (405)
                      |+.
T Consensus       366 n~l  368 (968)
T PLN00113        366 NNL  368 (968)
T ss_pred             Cee
Confidence            543

>PLN03210 Resistant to P

Probab=99.72  E-value=7.5e-17  Score=174.51  Aligned_cols=298  Identities=20%  Similarity=0.260  Sum_probs=191.0

Q ss_pred             ccccCchhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhh
Q 044605           15 ETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDA   94 (405)
Q Consensus        15 ~~l~~~~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~   94 (405)
                      ..+|..+.  ..+|++|+++++.++.+|.++.++++|++|++.....  ...++.+..+.+|+ .|.+.++......   
T Consensus       602 ~~lP~~f~--~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~--l~~ip~ls~l~~Le-~L~L~~c~~L~~l---  673 (1153)
T PLN03210        602 RCMPSNFR--PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN--LKEIPDLSMATNLE-TLKLSDCSSLVEL---  673 (1153)
T ss_pred             CCCCCcCC--ccCCcEEECcCccccccccccccCCCCCEEECCCCCC--cCcCCccccCCccc-EEEecCCCCcccc---
Confidence            34555543  5799999999999999999999999999998543322  22344566677777 7777664433221   


Q ss_pred             hhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeC-CCCCCcccCCCCCCCccEEEEEcCCCC------------
Q 044605           95 KEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYG-GTKFPAWLGQSSFENLVVLRFRNCNQC------------  161 (405)
Q Consensus        95 ~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~~~l~~L~~L~l~~~~~~------------  161 (405)
                                           +..+..+.+|+.|++.+|. ...+|..+   .+++|+.|++++|..+            
T Consensus       674 ---------------------p~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~~~nL~~  729 (1153)
T PLN03210        674 ---------------------PSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPDISTNISW  729 (1153)
T ss_pred             ---------------------chhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCccccccccCCcCe
Confidence                                 2223334455555555432 23334322   2444555555554433            


Q ss_pred             --------CcCCCCCCCCCccEEeecCCCCCeeeCCCCC-CCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEE
Q 044605          162 --------TSLPSVGHLPLLKNLVIKGMGRMAKAGTTGG-DQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIV  229 (405)
Q Consensus       162 --------~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~  229 (405)
                              ..+|....+++|++|.+.++........... .......+++|++|++++|+.+. .+|.   .+++|+.|+
T Consensus       730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~lP~si~~L~~L~~L~  808 (1153)
T PLN03210        730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV-ELPSSIQNLHKLEHLE  808 (1153)
T ss_pred             eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc-ccChhhhCCCCCCEEE
Confidence                    3444333445555555544321110000000 00112235799999999987776 5674   689999999


Q ss_pred             EeccCCc---cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCC
Q 044605          230 IMSCEQL---LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLS  304 (405)
Q Consensus       230 l~~c~~l---~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~  304 (405)
                      +.+|..+   |..+ .+++|+.|++++|..+.    .++. ..   +++  |+++++          +++.+|.++..++
T Consensus       809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~----~~p~-~~---~nL~~L~Ls~n----------~i~~iP~si~~l~  869 (1153)
T PLN03210        809 IENCINLETLPTGI-NLESLESLDLSGCSRLR----TFPD-IS---TNISDLNLSRT----------GIEEVPWWIEKFS  869 (1153)
T ss_pred             CCCCCCcCeeCCCC-CccccCEEECCCCCccc----cccc-cc---cccCEeECCCC----------CCccChHHHhcCC
Confidence            9999765   4444 68999999999998876    4443 22   344  566555          5678999999999


Q ss_pred             CccEEEEeC-CcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCC--------------cCCccEEeecCCcc
Q 044605          305 HITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGL--------------LPSVVYLSIYLCPD  369 (405)
Q Consensus       305 ~L~~L~l~~-~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~--------------~~~L~~L~i~~c~~  369 (405)
                      +|+.|++++ ++++.+|..       ...+++|+.+++++|..++.++....              .++...+.+.+|.+
T Consensus       870 ~L~~L~L~~C~~L~~l~~~-------~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~  942 (1153)
T PLN03210        870 NLSFLDMNGCNNLQRVSLN-------ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFN  942 (1153)
T ss_pred             CCCEEECCCCCCcCccCcc-------cccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccC
Confidence            999999999 899998876       57889999999999998876643221              12334567778876


Q ss_pred             hH
Q 044605          370 LE  371 (405)
Q Consensus       370 l~  371 (405)
                      +.
T Consensus       943 L~  944 (1153)
T PLN03210        943 LD  944 (1153)
T ss_pred             CC
Confidence            64

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.70  E-value=1.4e-19  Score=172.09  Aligned_cols=319  Identities=18%  Similarity=0.192  Sum_probs=205.2

Q ss_pred             eeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccccC
Q 044605           25 FVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSD  104 (405)
Q Consensus        25 ~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~~  104 (405)
                      +.+++.|.|..+.+..+|.+++.|.+|++|.+.+..  -.....+|..|..|+ .+.+.+..--+.........+..+..
T Consensus        31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~--L~~vhGELs~Lp~LR-sv~~R~N~LKnsGiP~diF~l~dLt~  107 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ--LISVHGELSDLPRLR-SVIVRDNNLKNSGIPTDIFRLKDLTI  107 (1255)
T ss_pred             hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh--hHhhhhhhccchhhH-HHhhhccccccCCCCchhccccccee
Confidence            578899999999999999999999999999643322  123345566666665 54443321111111112233333333


Q ss_pred             ChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCC-
Q 044605          105 SREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMG-  182 (405)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~-  182 (405)
                      ....-+...+++..+...+++-.|+++.+....+|..++ .++..|-.|++++|. +..+|+ +.++.+|++|.+++++ 
T Consensus       108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  108 LDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             eecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChh
Confidence            222334455677777777888888888888888887654 357778888888887 666665 7778899999988764 


Q ss_pred             ---CCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEecc--CCccccCCCCCCcceEEEcCc
Q 044605          183 ---RMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSC--EQLLVSCTTLPLLCELEIDGF  254 (405)
Q Consensus       183 ---~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c--~~l~~~l~~l~~L~~L~l~~~  254 (405)
                         .++-+|.          +.+|+.|++++....-+.+|.   .+.+|..++++.+  +.+|..+..+++|+.|++++|
T Consensus       186 ~hfQLrQLPs----------mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  186 NHFQLRQLPS----------MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             hHHHHhcCcc----------chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence               2333333          677788888876554446665   5677888888653  355788888888888888888


Q ss_pred             CCccccccccccCCCCCCCCCeeecCCC------------Ccc-EEecCCC--CcccccccCCCCCccEEEEeCCccccc
Q 044605          255 GEVAWINRPVEAGIFDSSNPGPEKSRTE------------VLP-WEIGSPD--QESLPEGLHKLSHITRISIVGSYLVSF  319 (405)
Q Consensus       255 ~~l~~~~~~~~~~~~~~l~~Ll~l~~~~------------~l~-l~i~~~~--l~~lp~~~~~l~~L~~L~l~~~~l~~l  319 (405)
                      +..+.   ....+...+++. |.+|.+.            +++ +....++  +..+|.+++.+..|+.+...+|.++-+
T Consensus       256 ~iteL---~~~~~~W~~lEt-LNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV  331 (1255)
T KOG0444|consen  256 KITEL---NMTEGEWENLET-LNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV  331 (1255)
T ss_pred             ceeee---eccHHHHhhhhh-hccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC
Confidence            65431   111111111111 2222210            000 1111122  235677777777777777777777777


Q ss_pred             ccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCcch
Q 044605          320 PKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCPDL  370 (405)
Q Consensus       320 ~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l  370 (405)
                      |++       +..|+.|+.|.++. +.+..+|++ .+++.|+.|++...|.+
T Consensus       332 PEg-------lcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  332 PEG-------LCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             chh-------hhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence            766       78889999999976 567778888 77889999999999876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.63  E-value=9.5e-17  Score=151.94  Aligned_cols=171  Identities=15%  Similarity=0.147  Sum_probs=87.7

Q ss_pred             eeeEEEEEccCCCCccC-ccccCCCccCcccCceeeCCCCCCCcccccccc-cCCCceEEcccccCCChhhhhhcccccc
Q 044605           25 FVIYLILVGDLTESKEM-PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSST-LLHEKLTILGLENVNVAEDAKEGNRTTS  102 (405)
Q Consensus        25 ~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~-~L~~~L~l~~l~~~~~~~~~~~~~l~~l  102 (405)
                      ...-+.||+++|.+..+ +.+|.++.||+.+++.   .+....++..+... ++. .|.+.+ ..+..........+..+
T Consensus        77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~---~N~Lt~IP~f~~~sghl~-~L~L~~-N~I~sv~se~L~~l~al  151 (873)
T KOG4194|consen   77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLN---KNELTRIPRFGHESGHLE-KLDLRH-NLISSVTSEELSALPAL  151 (873)
T ss_pred             ccceeeeeccccccccCcHHHHhcCCcceeeeec---cchhhhccccccccccee-EEeeec-cccccccHHHHHhHhhh
Confidence            45667899999988865 5668899999888642   11112222222211 122 333322 11111111111111111


Q ss_pred             cCChhhHHHHHHH-hccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeec
Q 044605          103 SDSREVAEIQTRV-LEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIK  179 (405)
Q Consensus       103 ~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~  179 (405)
                      +......+....+ ...++.-.++++|++.+|..+.+-..-+ ..+.+|..|.+++|. ++.+|.  +.+||+|+.|++.
T Consensus       152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F-~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF-DSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc-cccchheeeecccCc-ccccCHHHhhhcchhhhhhcc
Confidence            1111111111111 2234444678888888877665543322 146678888888776 777774  6668888888886


Q ss_pred             CCCCCeeeCC--CCCCCCCCCCCCcccEEeecc
Q 044605          180 GMGRMAKAGT--TGGDQQAAKGFPCLRELSIIN  210 (405)
Q Consensus       180 ~~~~l~~~~~--~~~~~~~~~~~~~L~~L~l~~  210 (405)
                      .+ .++.+..  |.       ++++|+.|.+..
T Consensus       230 rN-~irive~ltFq-------gL~Sl~nlklqr  254 (873)
T KOG4194|consen  230 RN-RIRIVEGLTFQ-------GLPSLQNLKLQR  254 (873)
T ss_pred             cc-ceeeehhhhhc-------Cchhhhhhhhhh
Confidence            53 3444422  33       366666666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.62  E-value=4.8e-17  Score=153.90  Aligned_cols=337  Identities=15%  Similarity=0.115  Sum_probs=178.6

Q ss_pred             eEEEEEccCCCCccCccc-cCCCccCcc--cCceeeCCCCCCCcccccccccCCCceEEcc--cccCCChhhhhhccccc
Q 044605           27 IYLILVGDLTESKEMPLR-IGKLTSLRT--LTKFAVGKSNCSGLSELRSSTLLHEKLTILG--LENVNVAEDAKEGNRTT  101 (405)
Q Consensus        27 ~L~~L~L~~~~i~~lP~~-i~~L~~L~~--L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~--l~~~~~~~~~~~~~l~~  101 (405)
                      .-+.||.++..+..+... +...--.++  |++.. +...-..+..+.++.+|+ .+.+..  +..+..... ..+.+..
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~Ldlsn-Nkl~~id~~~f~nl~nLq-~v~l~~N~Lt~IP~f~~-~sghl~~  129 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSN-NKLSHIDFEFFYNLPNLQ-EVNLNKNELTRIPRFGH-ESGHLEK  129 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccc-cccccCcHHHHhcCCcce-eeeeccchhhhcccccc-cccceeE
Confidence            456889999888765322 223333333  55321 111223444555666565 555543  222221111 0111111


Q ss_pred             ccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeec
Q 044605          102 SSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIK  179 (405)
Q Consensus       102 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~  179 (405)
                      +.-  ..+.....-.+++...+.|+.|+++.|....+|..-+ ..-.++++|++++|. ++.+.  .+..+.+|-+|.+.
T Consensus       130 L~L--~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sf-p~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  130 LDL--RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSF-PAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             Eee--eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCC-CCCCCceEEeecccc-ccccccccccccchheeeecc
Confidence            100  0000111112233344556666776666555543222 123567777777666 55553  25566677777776


Q ss_pred             CCCCCeeeCC--CCCCCCCCCCCCcccEEeeccCccccc--cCC-CCCCcccEEEEeccC--Cc-cccCCCCCCcceEEE
Q 044605          180 GMGRMAKAGT--TGGDQQAAKGFPCLRELSIINCSKLKG--RLP-QHFSSLERIVIMSCE--QL-LVSCTTLPLLCELEI  251 (405)
Q Consensus       180 ~~~~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~--~l~-~~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l  251 (405)
                      .+ .+..++.  |..       +|+|+.|++... .++-  .+. +++++|+.|.+..+.  .+ ...|..+.++++|++
T Consensus       206 rN-rittLp~r~Fk~-------L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  206 RN-RITTLPQRSFKR-------LPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL  276 (873)
T ss_pred             cC-cccccCHHHhhh-------cchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence            54 3444443  222       677777777653 2221  111 267777777775532  34 345666888888888


Q ss_pred             cCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcc
Q 044605          252 DGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLS  328 (405)
Q Consensus       252 ~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~  328 (405)
                      +.|...     .+..+++.+++.|  |+++++..-          ++ +.++...++|+.|++++|+++++++..|..|.
T Consensus       277 ~~N~l~-----~vn~g~lfgLt~L~~L~lS~NaI~----------rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  277 ETNRLQ-----AVNEGWLFGLTSLEQLDLSYNAIQ----------RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS  341 (873)
T ss_pred             ccchhh-----hhhcccccccchhhhhccchhhhh----------eeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence            877544     5566778888888  888877433          32 44566667777777777777777776652222


Q ss_pred             c------------------CCCCCCcCEEeeecCCCCcccCCC----CCcCCccEEeecCCcchHHHhhcCccccccccc
Q 044605          329 F------------------VRNLTSLERLELSRCPILKSFPEN----GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVA  386 (405)
Q Consensus       329 ~------------------l~~l~~L~~L~l~~c~~l~~l~~~----~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~  386 (405)
                      .                  +..+++|++|++++|..--.+.++    ..+++|+.|++.|. +++.+-    ...+.-+.
T Consensus       342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~----krAfsgl~  416 (873)
T KOG4194|consen  342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIP----KRAFSGLE  416 (873)
T ss_pred             HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecc----hhhhccCc
Confidence            2                  345667777777765433223222    23467777777775 232221    22334466


Q ss_pred             ccCeeEecceEee
Q 044605          387 DIPFVQLNHKLVF  399 (405)
Q Consensus       387 ~i~~~~~~~~~~~  399 (405)
                      .+.++.++++.|-
T Consensus       417 ~LE~LdL~~Naia  429 (873)
T KOG4194|consen  417 ALEHLDLGDNAIA  429 (873)
T ss_pred             ccceecCCCCcce
Confidence            6667777776653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.57  E-value=1.6e-17  Score=150.66  Aligned_cols=61  Identities=28%  Similarity=0.330  Sum_probs=52.8

Q ss_pred             cCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCC
Q 044605          118 MLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMG  182 (405)
Q Consensus       118 ~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~  182 (405)
                      .++.+.++..|++.++...++|+.+.  .+.+|++|+++++. ++.+|. +|.+ +|+.|.+.+++
T Consensus       247 ~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  247 HLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             HhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence            45578899999999999999999988  78999999999887 888874 9999 89999987754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.51  E-value=9.9e-17  Score=152.94  Aligned_cols=335  Identities=16%  Similarity=0.148  Sum_probs=203.6

Q ss_pred             heeeEEEEEccCCCCc--cCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccc
Q 044605           24 IFVIYLILVGDLTESK--EMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTT  101 (405)
Q Consensus        24 ~~~~L~~L~L~~~~i~--~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~  101 (405)
                      .++..+-.|+++|.++  .+|..+..++.++-|.+....  -...+.+|+.|.+|. .|++.+.+-+.-  ......+..
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~--L~~vPeEL~~lqkLE-HLs~~HN~L~~v--hGELs~Lp~   79 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK--LEQVPEELSRLQKLE-HLSMAHNQLISV--HGELSDLPR   79 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh--hhhChHHHHHHhhhh-hhhhhhhhhHhh--hhhhccchh
Confidence            4667888899999876  699999999999988642222  245678888888887 777765321110  001111111


Q ss_pred             ccC--ChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEe
Q 044605          102 SSD--SREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLV  177 (405)
Q Consensus       102 l~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~  177 (405)
                      ++.  ...+.-....++..+..+..|..|+++.+.....|..+-  .-+++-+|++++|+ +..+|.  +.++.-|-.|+
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE--~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLE--YAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhh--hhcCcEEEEcccCc-cccCCchHHHhhHhHhhhc
Confidence            111  111111222344445556667777777777666676555  55677777777665 666664  44566666666


Q ss_pred             ecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccc---cCCCCCCcccEEEEeccC----CccccCCCCCCcceEE
Q 044605          178 IKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKG---RLPQHFSSLERIVIMSCE----QLLVSCTTLPLLCELE  250 (405)
Q Consensus       178 l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~l~~~~~~L~~L~l~~c~----~l~~~l~~l~~L~~L~  250 (405)
                      ++++ .++.+|.      ....+..|++|.+++.+-.-.   .+| .+.+|+.|.+++-.    ++|..+..+.+|+.++
T Consensus       157 LS~N-rLe~LPP------Q~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD  228 (1255)
T KOG0444|consen  157 LSNN-RLEMLPP------QIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD  228 (1255)
T ss_pred             cccc-hhhhcCH------HHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence            6653 4555544      122356777788877543211   222 45666666666642    5577777788888888


Q ss_pred             EcCcCCccccccccccCCCCCCCCC--eeecCCCCcc-------------EEecCCCCcccccccCCCCCccEEEEeCCc
Q 044605          251 IDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLP-------------WEIGSPDQESLPEGLHKLSHITRISIVGSY  315 (405)
Q Consensus       251 l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~-------------l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~  315 (405)
                      ++.|..-     .+| +.+-++.+|  |.+|++...+             +.++-++++.+|+++..+++|+.|++.+|+
T Consensus       229 lS~N~Lp-----~vP-ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  229 LSENNLP-----IVP-ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             ccccCCC-----cch-HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc
Confidence            8876432     223 355566666  7777765443             444677777788888888888888877766


Q ss_pred             cc--ccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeE
Q 044605          316 LV--SFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQ  392 (405)
Q Consensus       316 l~--~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~  392 (405)
                      ++  .||+.       ++.+..|+.+..++ ++++-+|++ .-+..|+.|.+....-++      -.+.++.+..+..+.
T Consensus       303 L~FeGiPSG-------IGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiT------LPeaIHlL~~l~vLD  368 (1255)
T KOG0444|consen  303 LTFEGIPSG-------IGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLIT------LPEAIHLLPDLKVLD  368 (1255)
T ss_pred             ccccCCccc-------hhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceee------chhhhhhcCCcceee
Confidence            54  56665       67777788777776 467778876 445577777766543221      123344455555554


Q ss_pred             ec
Q 044605          393 LN  394 (405)
Q Consensus       393 ~~  394 (405)
                      +.
T Consensus       369 lr  370 (1255)
T KOG0444|consen  369 LR  370 (1255)
T ss_pred             cc
Confidence            43

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.48  E-value=3.3e-16  Score=155.42  Aligned_cols=235  Identities=18%  Similarity=0.261  Sum_probs=157.1

Q ss_pred             CCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605          121 PHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG  199 (405)
Q Consensus       121 ~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  199 (405)
                      ...+|++++++.+....+|+|+.  .+.+|+.+++.++. +..+|. +....+|+.|.+..+ .++.++.      ...+
T Consensus       239 ~p~nl~~~dis~n~l~~lp~wi~--~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~------~le~  308 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSNLPEWIG--ACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPP------FLEG  308 (1081)
T ss_pred             ccccceeeecchhhhhcchHHHH--hcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCC------cccc
Confidence            34677777777777777888887  77888888887766 455553 555666666665543 3555554      1224


Q ss_pred             CCcccEEeeccCccccccCCC-----------------------------CCCcccEEEEeccC---CccccCCCCCCcc
Q 044605          200 FPCLRELSIINCSKLKGRLPQ-----------------------------HFSSLERIVIMSCE---QLLVSCTTLPLLC  247 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~~-----------------------------~~~~L~~L~l~~c~---~l~~~l~~l~~L~  247 (405)
                      +.+|++|++... ++. .+|.                             .++.|+.|++.++.   +..+.+..+++|+
T Consensus       309 ~~sL~tLdL~~N-~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK  386 (1081)
T KOG0618|consen  309 LKSLRTLDLQSN-NLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK  386 (1081)
T ss_pred             cceeeeeeehhc-ccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence            677777777552 333 1221                             34445555555432   2234556688999


Q ss_pred             eEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCC
Q 044605          248 ELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLE  325 (405)
Q Consensus       248 ~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~  325 (405)
                      .|+++.|..-     .||...+.+++.|  |.+|++          +|+.+|..+.+++.|+.|...+|++..+|+    
T Consensus       387 VLhLsyNrL~-----~fpas~~~kle~LeeL~LSGN----------kL~~Lp~tva~~~~L~tL~ahsN~l~~fPe----  447 (1081)
T KOG0618|consen  387 VLHLSYNRLN-----SFPASKLRKLEELEELNLSGN----------KLTTLPDTVANLGRLHTLRAHSNQLLSFPE----  447 (1081)
T ss_pred             eeeecccccc-----cCCHHHHhchHHhHHHhcccc----------hhhhhhHHHHhhhhhHHHhhcCCceeechh----
Confidence            9999987433     6788888888888  888877          778999989999999999999999999884    


Q ss_pred             CcccCCCCCCcCEEeeecCCCCcccCC-CCCc-CCccEEeecCCcchHHHhhcCcccccccccccCeeEecce
Q 044605          326 SLSFVRNLTSLERLELSRCPILKSFPE-NGLL-PSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHK  396 (405)
Q Consensus       326 ~l~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~-~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~  396 (405)
                          +..++.|+.+|++.| .++.+-. ...| ++|++|+++|.+.+--     +.++....+++....++.+
T Consensus       448 ----~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~-----d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  448 ----LAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVF-----DHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ----hhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCccccc-----chhhhHHhhhhhheecccC
Confidence                589999999999864 5554422 2455 7999999999975311     2333344444444444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.47  E-value=1.8e-16  Score=143.91  Aligned_cols=329  Identities=16%  Similarity=0.185  Sum_probs=184.9

Q ss_pred             ccccCchhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhh
Q 044605           15 ETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDA   94 (405)
Q Consensus        15 ~~l~~~~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~   94 (405)
                      .++|+.+.. ...++.|++++|.+.++|.+|+.+..|..|+.  ..+.....+..+..+..+. .+.+.. .......+.
T Consensus       104 s~lp~~i~s-~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~--~~N~i~slp~~~~~~~~l~-~l~~~~-n~l~~l~~~  178 (565)
T KOG0472|consen  104 SELPEQIGS-LISLVKLDCSSNELKELPDSIGRLLDLEDLDA--TNNQISSLPEDMVNLSKLS-KLDLEG-NKLKALPEN  178 (565)
T ss_pred             hhccHHHhh-hhhhhhhhccccceeecCchHHHHhhhhhhhc--cccccccCchHHHHHHHHH-Hhhccc-cchhhCCHH
Confidence            344444432 33666666666666666666776666666652  2222222333444443332 222221 111222222


Q ss_pred             hhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCC
Q 044605           95 KEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPL  172 (405)
Q Consensus        95 ~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~  172 (405)
                      ... ++.+++..+.....+.++..++.+.+|..|++..+....+|. +.  .+..|.+++++.+. +.-+|+  +.++++
T Consensus       179 ~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-f~--gcs~L~Elh~g~N~-i~~lpae~~~~L~~  253 (565)
T KOG0472|consen  179 HIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE-FP--GCSLLKELHVGENQ-IEMLPAEHLKHLNS  253 (565)
T ss_pred             HHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC-CC--ccHHHHHHHhcccH-HHhhHHHHhccccc
Confidence            222 555666666667777777888888888888888888877784 33  47778888887665 666765  557888


Q ss_pred             ccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCC--cccEEEEeccCC---------------
Q 044605          173 LKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFS--SLERIVIMSCEQ---------------  235 (405)
Q Consensus       173 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~--~L~~L~l~~c~~---------------  235 (405)
                      +.+|++.++ .++.+|.      ....+.+|++|++++. .++ .+|..+.  +|+.|.+.+.+-               
T Consensus       254 l~vLDLRdN-klke~Pd------e~clLrsL~rLDlSNN-~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~v  324 (565)
T KOG0472|consen  254 LLVLDLRDN-KLKEVPD------EICLLRSLERLDLSNN-DIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEV  324 (565)
T ss_pred             ceeeecccc-ccccCch------HHHHhhhhhhhcccCC-ccc-cCCcccccceeeehhhcCCchHHHHHHHHcccHHHH
Confidence            888888875 4555654      1223678888888773 555 4554322  556666655320               


Q ss_pred             ------------c--------------cccCCC---CCCcceEEEcCcCCccccccccccCCCCCCC-CC---eeecCCC
Q 044605          236 ------------L--------------LVSCTT---LPLLCELEIDGFGEVAWINRPVEAGIFDSSN-PG---PEKSRTE  282 (405)
Q Consensus       236 ------------l--------------~~~l~~---l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~-~L---l~l~~~~  282 (405)
                                  +              +..++.   +.+.+.|++++-+..     .+|.+.|..-+ .+   ..++.+.
T Consensus       325 LKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-----~VPdEVfea~~~~~Vt~VnfskNq  399 (565)
T KOG0472|consen  325 LKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-----LVPDEVFEAAKSEIVTSVNFSKNQ  399 (565)
T ss_pred             HHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-----cCCHHHHHHhhhcceEEEecccch
Confidence                        0              001111   334555555543221     22222221000 00   2222221


Q ss_pred             Ccc-------------------------------------EEecCCCCcccccccCCCCCccEEEEeCCcccccccCCC-
Q 044605          283 VLP-------------------------------------WEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGL-  324 (405)
Q Consensus       283 ~l~-------------------------------------l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~-  324 (405)
                      -.+                                     +..+.+-+..+|..++.+..|+.|+++.|++..+|+--. 
T Consensus       400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~  479 (565)
T KOG0472|consen  400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYE  479 (565)
T ss_pred             HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhh
Confidence            111                                     222444555677777777777777777777776664211 


Q ss_pred             --------------CCccc--CCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCc
Q 044605          325 --------------ESLSF--VRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCP  368 (405)
Q Consensus       325 --------------~~l~~--l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~  368 (405)
                                    ...+.  +.++.+|.+|++.+| .+..+|.+ +..++|++|+++|.|
T Consensus       480 lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  480 LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             HHHHHHHHhccccccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence                          11111  677888899999874 56777766 788899999999886

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.31  E-value=1.9e-11  Score=124.65  Aligned_cols=176  Identities=23%  Similarity=0.184  Sum_probs=113.7

Q ss_pred             CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc
Q 044605          123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC  202 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  202 (405)
                      .+|+.|++.+|....+|.     .+++|+.|++++|. +..+|.+  ..+|+.|++.++ .+..++.         ..++
T Consensus       282 ~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N~-L~~Lp~l--p~~L~~L~Ls~N-~L~~LP~---------lp~~  343 (788)
T PRK15387        282 SGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQ-LASLPAL--PSELCKLWAYNN-QLTSLPT---------LPSG  343 (788)
T ss_pred             hhcCEEECcCCccccccc-----cccccceeECCCCc-cccCCCC--cccccccccccC-ccccccc---------cccc
Confidence            457777777777666664     24678888888775 5666542  245677777664 3444443         1247


Q ss_pred             ccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCC-CCCcceEEEcCcCCccccccccccCCCCCCCCC--eeec
Q 044605          203 LRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTT-LPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKS  279 (405)
Q Consensus       203 L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~  279 (405)
                      |+.|+++++ .++ .+|...++|+.|+++++. + ..++. .++|+.|++++|+..     .+|. ..   ..|  |+++
T Consensus       344 Lq~LdLS~N-~Ls-~LP~lp~~L~~L~Ls~N~-L-~~LP~l~~~L~~LdLs~N~Lt-----~LP~-l~---s~L~~LdLS  410 (788)
T PRK15387        344 LQELSVSDN-QLA-SLPTLPSELYKLWAYNNR-L-TSLPALPSGLKELIVSGNRLT-----SLPV-LP---SELKELMVS  410 (788)
T ss_pred             cceEecCCC-ccC-CCCCCCcccceehhhccc-c-ccCcccccccceEEecCCccc-----CCCC-cc---cCCCEEEcc
Confidence            888888874 666 467666778888777643 2 12322 347888888887543     3332 11   234  5666


Q ss_pred             CCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcc
Q 044605          280 RTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKS  349 (405)
Q Consensus       280 ~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~  349 (405)
                      ++          .++.+|..   ..+|+.|++++|+++.+|..       +.++++|+.|++++|+.-..
T Consensus       411 ~N----------~LssIP~l---~~~L~~L~Ls~NqLt~LP~s-------l~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        411 GN----------RLTSLPML---PSGLLSLSVYRNQLTRLPES-------LIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             CC----------cCCCCCcc---hhhhhhhhhccCcccccChH-------HhhccCCCeEECCCCCCCch
Confidence            65          45666653   34678888888889888876       57888999999998875443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.26  E-value=3.2e-11  Score=122.99  Aligned_cols=191  Identities=26%  Similarity=0.188  Sum_probs=99.8

Q ss_pred             CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc
Q 044605          123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC  202 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  202 (405)
                      ++|+.|++.+|....+|.     .+++|+.|++++|. ++.+|.  .+++|+.|+++++ .+..++.         ..++
T Consensus       262 ~sL~~L~Ls~N~L~~Lp~-----lp~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~---------lp~~  323 (788)
T PRK15387        262 PGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDN-QLASLPA---------LPSE  323 (788)
T ss_pred             cccceeeccCCchhhhhh-----chhhcCEEECcCCc-cccccc--cccccceeECCCC-ccccCCC---------Cccc
Confidence            456666666665554543     23456666776665 555554  2456777777654 3443432         1345


Q ss_pred             ccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCC-CCCcceEEEcCcCCccccccccccCCCCCCCCC--eeec
Q 044605          203 LRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTT-LPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKS  279 (405)
Q Consensus       203 L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~  279 (405)
                      |+.|++.++ .++ .+|...++|+.|+++++. + ..++. .++|+.|++++|...     .+|. ..   ..|  |+++
T Consensus       324 L~~L~Ls~N-~L~-~LP~lp~~Lq~LdLS~N~-L-s~LP~lp~~L~~L~Ls~N~L~-----~LP~-l~---~~L~~LdLs  390 (788)
T PRK15387        324 LCKLWAYNN-QLT-SLPTLPSGLQELSVSDNQ-L-ASLPTLPSELYKLWAYNNRLT-----SLPA-LP---SGLKELIVS  390 (788)
T ss_pred             ccccccccC-ccc-cccccccccceEecCCCc-c-CCCCCCCcccceehhhccccc-----cCcc-cc---cccceEEec
Confidence            666666663 444 355444467777776543 1 11111 245666666655322     2222 11   123  4444


Q ss_pred             CCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCC
Q 044605          280 RTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPS  358 (405)
Q Consensus       280 ~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~  358 (405)
                      ++          .++.+|..   .++|+.|++++|.++.+|..          ..+|+.|++++| .++.+|.. ..+++
T Consensus       391 ~N----------~Lt~LP~l---~s~L~~LdLS~N~LssIP~l----------~~~L~~L~Ls~N-qLt~LP~sl~~L~~  446 (788)
T PRK15387        391 GN----------RLTSLPVL---PSELKELMVSGNRLTSLPML----------PSGLLSLSVYRN-QLTRLPESLIHLSS  446 (788)
T ss_pred             CC----------cccCCCCc---ccCCCEEEccCCcCCCCCcc----------hhhhhhhhhccC-cccccChHHhhccC
Confidence            44          33445532   24566677777666666532          235566666664 45666654 33456


Q ss_pred             ccEEeecCCc
Q 044605          359 VVYLSIYLCP  368 (405)
Q Consensus       359 L~~L~i~~c~  368 (405)
                      |+.|++++++
T Consensus       447 L~~LdLs~N~  456 (788)
T PRK15387        447 ETTVNLEGNP  456 (788)
T ss_pred             CCeEECCCCC
Confidence            6677776664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.19  E-value=2.3e-12  Score=128.62  Aligned_cols=164  Identities=15%  Similarity=0.085  Sum_probs=90.4

Q ss_pred             ccEEEEEeeC-CCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcc
Q 044605          125 LKELKVQNYG-GTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCL  203 (405)
Q Consensus       125 L~~L~l~~~~-~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L  203 (405)
                      ++.+++..+. +..++..+.  .+++  .|++.++. +. .-.+..+++|+.+....+. +..+..         .-++|
T Consensus       158 ik~~~l~~n~l~~~~~~~i~--~l~~--~ldLr~N~-~~-~~dls~~~~l~~l~c~rn~-ls~l~~---------~g~~l  221 (1081)
T KOG0618|consen  158 IKKLDLRLNVLGGSFLIDIY--NLTH--QLDLRYNE-ME-VLDLSNLANLEVLHCERNQ-LSELEI---------SGPSL  221 (1081)
T ss_pred             chhhhhhhhhcccchhcchh--hhhe--eeecccch-hh-hhhhhhccchhhhhhhhcc-cceEEe---------cCcch
Confidence            4555554432 334443332  3333  58888776 33 3345667777777655432 222211         25788


Q ss_pred             cEEeeccCccccccCCC-CCCcccEEEEecc--CCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eee
Q 044605          204 RELSIINCSKLKGRLPQ-HFSSLERIVIMSC--EQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEK  278 (405)
Q Consensus       204 ~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c--~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l  278 (405)
                      +.|+..+|+-.+ ..+. ...+|+.++++..  ..+|.++..+++|+.++...|...     .++. .+...++|  +.+
T Consensus       222 ~~L~a~~n~l~~-~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-----~lp~-ri~~~~~L~~l~~  294 (1081)
T KOG0618|consen  222 TALYADHNPLTT-LDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-----ALPL-RISRITSLVSLSA  294 (1081)
T ss_pred             heeeeccCccee-eccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-----hhHH-HHhhhhhHHHHHh
Confidence            888888876544 3443 3456888888764  366888888888888888887553     2222 12222223  333


Q ss_pred             cCCCCccEEecCCCCcccccccCCCCCccEEEEeCCccccccc
Q 044605          279 SRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPK  321 (405)
Q Consensus       279 ~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~  321 (405)
                      ..|          +++.+|.....+++|++|++..|++.++|+
T Consensus       295 ~~n----------el~yip~~le~~~sL~tLdL~~N~L~~lp~  327 (1081)
T KOG0618|consen  295 AYN----------ELEYIPPFLEGLKSLRTLDLQSNNLPSLPD  327 (1081)
T ss_pred             hhh----------hhhhCCCcccccceeeeeeehhccccccch
Confidence            333          334455545555555555555555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.06  E-value=2.5e-10  Score=117.00  Aligned_cols=178  Identities=18%  Similarity=0.181  Sum_probs=93.1

Q ss_pred             CccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc
Q 044605          124 GLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC  202 (405)
Q Consensus       124 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  202 (405)
                      +|+.|++.+|....+|.++.    ++|+.|++++|. +..+|. +  .++|+.|+++++ .+..++.        ...++
T Consensus       242 ~L~~L~Ls~N~L~~LP~~l~----s~L~~L~Ls~N~-L~~LP~~l--~~sL~~L~Ls~N-~Lt~LP~--------~lp~s  305 (754)
T PRK15370        242 TIQEMELSINRITELPERLP----SALQSLDLFHNK-ISCLPENL--PEELRYLSVYDN-SIRTLPA--------HLPSG  305 (754)
T ss_pred             cccEEECcCCccCcCChhHh----CCCCEEECcCCc-cCcccccc--CCCCcEEECCCC-ccccCcc--------cchhh
Confidence            46666666666656665443    356777776554 455553 2  246677776664 3433332        11235


Q ss_pred             ccEEeeccCccccccCCC-CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--ee
Q 044605          203 LRELSIINCSKLKGRLPQ-HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PE  277 (405)
Q Consensus       203 L~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~  277 (405)
                      |+.|+++++ .++ .+|. ..++|+.|++.+|.  .+|..+  .++|+.|++++|+..     .+|....   ..|  |+
T Consensus       306 L~~L~Ls~N-~Lt-~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~-----~LP~~lp---~~L~~Ld  373 (754)
T PRK15370        306 ITHLNVQSN-SLT-ALPETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQIT-----VLPETLP---PTITTLD  373 (754)
T ss_pred             HHHHHhcCC-ccc-cCCccccccceeccccCCccccCChhh--cCcccEEECCCCCCC-----cCChhhc---CCcCEEE
Confidence            666666663 444 2443 34566666666653  223322  256777777766432     3333221   133  45


Q ss_pred             ecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCC
Q 044605          278 KSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCP  345 (405)
Q Consensus       278 l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~  345 (405)
                      +++|          .++.+|..+.  .+|+.|++++|++..+|..    +|. ...++.+..|++.+|+
T Consensus       374 Ls~N----------~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~s----l~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        374 VSRN----------ALTNLPENLP--AALQIMQASRNNLVRLPES----LPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CCCC----------cCCCCCHhHH--HHHHHHhhccCCcccCchh----HHHHhhcCCCccEEEeeCCC
Confidence            5544          3345555432  2566677777777666643    111 2334666677777665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.00  E-value=6.5e-12  Score=101.96  Aligned_cols=82  Identities=27%  Similarity=0.391  Sum_probs=57.2

Q ss_pred             CCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCC-CCCCCCC
Q 044605          119 LKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGT-TGGDQQA  196 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~  196 (405)
                      +..++++..|.++.+....+|..+.  .+.+|+.|+++++. ++.+|. +..+|+|+.|+++ ++.+...+. ||+    
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia--~l~nlevln~~nnq-ie~lp~~issl~klr~lnvg-mnrl~~lprgfgs----  100 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIA--ELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVG-MNRLNILPRGFGS----  100 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHH--Hhhhhhhhhcccch-hhhcChhhhhchhhhheecc-hhhhhcCccccCC----
Confidence            4445666667777777777777666  78888888888776 777764 7788888888775 334555555 665    


Q ss_pred             CCCCCcccEEeeccC
Q 044605          197 AKGFPCLRELSIINC  211 (405)
Q Consensus       197 ~~~~~~L~~L~l~~~  211 (405)
                         ||.|+.|++...
T Consensus       101 ---~p~levldltyn  112 (264)
T KOG0617|consen  101 ---FPALEVLDLTYN  112 (264)
T ss_pred             ---Cchhhhhhcccc
Confidence               777887777653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.93  E-value=3.3e-11  Score=97.93  Aligned_cols=158  Identities=23%  Similarity=0.284  Sum_probs=112.2

Q ss_pred             CCCCccEEEEEcCCCCCcC-CCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCc
Q 044605          146 SFENLVVLRFRNCNQCTSL-PSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSS  224 (405)
Q Consensus       146 ~l~~L~~L~l~~~~~~~~l-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~  224 (405)
                      .+++++.|-++++. ++.+ |.+..+.+|+.|+++++ .++.++.      ....+|+|+.|++.- ..+          
T Consensus        31 ~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~------~issl~klr~lnvgm-nrl----------   91 (264)
T KOG0617|consen   31 NMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPT------SISSLPKLRILNVGM-NRL----------   91 (264)
T ss_pred             chhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcCh------hhhhchhhhheecch-hhh----------
Confidence            56778888888887 4444 45777888888877764 4555544      111244444444421 111          


Q ss_pred             ccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCC
Q 044605          225 LERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHK  302 (405)
Q Consensus       225 L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~  302 (405)
                               ..+|.+|+++|.|+.|+++.++...    ..-++.|..++.|  +.+++.          .+..+|..+++
T Consensus        92 ---------~~lprgfgs~p~levldltynnl~e----~~lpgnff~m~tlralyl~dn----------dfe~lp~dvg~  148 (264)
T KOG0617|consen   92 ---------NILPRGFGSFPALEVLDLTYNNLNE----NSLPGNFFYMTTLRALYLGDN----------DFEILPPDVGK  148 (264)
T ss_pred             ---------hcCccccCCCchhhhhhcccccccc----ccCCcchhHHHHHHHHHhcCC----------CcccCChhhhh
Confidence                     2357888888999999998876554    4444566666666  777666          44678999999


Q ss_pred             CCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC
Q 044605          303 LSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN  353 (405)
Q Consensus       303 l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~  353 (405)
                      +++|+.|.+.+|.+-++|.+       ++.+..|++|.+.++ .++.+|..
T Consensus       149 lt~lqil~lrdndll~lpke-------ig~lt~lrelhiqgn-rl~vlppe  191 (264)
T KOG0617|consen  149 LTNLQILSLRDNDLLSLPKE-------IGDLTRLRELHIQGN-RLTVLPPE  191 (264)
T ss_pred             hcceeEEeeccCchhhCcHH-------HHHHHHHHHHhcccc-eeeecChh
Confidence            99999999999999999988       789999999999985 67777743

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=4.6e-10  Score=116.91  Aligned_cols=68  Identities=24%  Similarity=0.214  Sum_probs=50.7

Q ss_pred             cccccCchhhheeeEEEEEccCC-CCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605           14 METINGDFTEIFVIYLILVGDLT-ESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG   84 (405)
Q Consensus        14 l~~l~~~~~~~~~~L~~L~L~~~-~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~   84 (405)
                      +..++.+++..++.|++|||++| .+.++|.+|++|.+||+|++..+.-  ..-+..+++|..|. +|++..
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~L~-~Lnl~~  627 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKKLI-YLNLEV  627 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHHHhhh-eecccc
Confidence            44566677878999999999988 6899999999999999998654442  23455566666666 666544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.90  E-value=1.2e-08  Score=104.96  Aligned_cols=114  Identities=19%  Similarity=0.203  Sum_probs=65.7

Q ss_pred             CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc
Q 044605          123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC  202 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  202 (405)
                      .+...|++.+.....+|..+.    ++|+.|++++|. ++.+|.- ..++|++|++.++. +..++.        ..+++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip----~~L~~L~Ls~N~-LtsLP~~-l~~nL~~L~Ls~N~-LtsLP~--------~l~~~  242 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP----EQITTLILDNNE-LKSLPEN-LQGNIKTLYANSNQ-LTSIPA--------TLPDT  242 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc----cCCcEEEecCCC-CCcCChh-hccCCCEEECCCCc-cccCCh--------hhhcc
Confidence            355677777766666776443    467788887775 6666641 13577888777653 444432        12346


Q ss_pred             ccEEeeccCccccccCCCC-CCcccEEEEeccC--CccccCCCCCCcceEEEcCcC
Q 044605          203 LRELSIINCSKLKGRLPQH-FSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFG  255 (405)
Q Consensus       203 L~~L~l~~~~~l~~~l~~~-~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~  255 (405)
                      |+.|++++| .+. .+|.. ..+|+.|+++++.  .+|..++  ++|+.|++++|.
T Consensus       243 L~~L~Ls~N-~L~-~LP~~l~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~  294 (754)
T PRK15370        243 IQEMELSIN-RIT-ELPERLPSALQSLDLFHNKISCLPENLP--EELRYLSVYDNS  294 (754)
T ss_pred             ccEEECcCC-ccC-cCChhHhCCCCEEECcCCccCccccccC--CCCcEEECCCCc
Confidence            777777765 344 34432 2357777776432  2233222  467777777764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.74  E-value=3.3e-09  Score=97.06  Aligned_cols=257  Identities=16%  Similarity=0.175  Sum_probs=146.6

Q ss_pred             CccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCC--CCCCCCCCCC
Q 044605          124 GLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGT--TGGDQQAAKG  199 (405)
Q Consensus       124 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~  199 (405)
                      .-..+++..|....+|...+ +.+++|++|++++|. ++.+.+  +..++.|..|.+.+.+.+.+++.  |++       
T Consensus        68 ~tveirLdqN~I~~iP~~aF-~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-------  138 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAF-KTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-------  138 (498)
T ss_pred             cceEEEeccCCcccCChhhc-cchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-------
Confidence            44556666677667766544 256777777777766 555432  66677777777777667777765  444       


Q ss_pred             CCcccEEeeccCccccccCCC----CCCcccEEEEeccC--Ccc-ccCCCCCCcceEEEcCcCCccc-----c-------
Q 044605          200 FPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSCE--QLL-VSCTTLPLLCELEIDGFGEVAW-----I-------  260 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c~--~l~-~~l~~l~~L~~L~l~~~~~l~~-----~-------  260 (405)
                      +.+|+.|.+.-+ ++. .+++    .+++|..|.+.+..  .+. ..|..+.+++.+.+..++....     .       
T Consensus       139 L~slqrLllNan-~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~  216 (498)
T KOG4237|consen  139 LSSLQRLLLNAN-HIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN  216 (498)
T ss_pred             HHHHHHHhcChh-hhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence            666666655432 222 1221    46666666666532  222 3566677788887777763210     0       


Q ss_pred             c-------c------------ccccCCCC-CCCCC-eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccc
Q 044605          261 N-------R------------PVEAGIFD-SSNPG-PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVS  318 (405)
Q Consensus       261 ~-------~------------~~~~~~~~-~l~~L-l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~  318 (405)
                      .       |            .+....|. .++.+ -.        +.-.|.-...-|. +|+.+++|+.|++++|.++.
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~--------~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~  288 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSR--------LSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR  288 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHh--------hccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence            0       0            00000000 00000 00        0002333334454 67789999999999999998


Q ss_pred             cccCCCCCccc------------------CCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCcc--------h
Q 044605          319 FPKGGLESLSF------------------VRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCPD--------L  370 (405)
Q Consensus       319 l~~~~~~~l~~------------------l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~--------l  370 (405)
                      |.+++|+.+..                  +.++..|++|++.+| +++.+..+  ....+|.+|.+-+.|-        +
T Consensus       289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl  367 (498)
T KOG4237|consen  289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWL  367 (498)
T ss_pred             hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCcccCccchHHH
Confidence            88888854444                  678889999999996 56666443  4456889999887552        3


Q ss_pred             HHHhhcCcccc---cccccccCeeEecceEeeC
Q 044605          371 EEKCKKDEREY---CHLVADIPFVQLNHKLVFD  400 (405)
Q Consensus       371 ~~~~~~~~~~~---~~~i~~i~~~~~~~~~~~~  400 (405)
                      .+|.++.+..+   ..+-..+..+.+.+..|.+
T Consensus       368 ~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~  400 (498)
T KOG4237|consen  368 GEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGD  400 (498)
T ss_pred             HHHHhhCCCCCCCCCCCCchhccccchhccccc
Confidence            45555444333   3333344444444444443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.70  E-value=1.2e-09  Score=99.76  Aligned_cols=193  Identities=18%  Similarity=0.194  Sum_probs=103.4

Q ss_pred             CCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---
Q 044605          146 SFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---  220 (405)
Q Consensus       146 ~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---  220 (405)
                      .+++|+.|++++|. ++.+.  ++..+..+++|.+.++ .++.+..     ....++.+|+.|++++. .++-.-|.   
T Consensus       272 ~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~-----~~f~~ls~L~tL~L~~N-~it~~~~~aF~  343 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRN-KLEFVSS-----GMFQGLSGLKTLSLYDN-QITTVAPGAFQ  343 (498)
T ss_pred             hcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcc-hHHHHHH-----HhhhccccceeeeecCC-eeEEEeccccc
Confidence            57888999998887 66664  3777888888888775 3555533     11223778888988884 44434443   


Q ss_pred             CCCcccEEEEeccC--------Ccccc--------CCC---CCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCC
Q 044605          221 HFSSLERIVIMSCE--------QLLVS--------CTT---LPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRT  281 (405)
Q Consensus       221 ~~~~L~~L~l~~c~--------~l~~~--------l~~---l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~  281 (405)
                      ...+|.++.+..++        .+-+|        .+.   -..++.+.+++...-+     +..+ .+.-.....-+.|
T Consensus       344 ~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~-----~~c~-~~ee~~~~~s~~c  417 (498)
T KOG4237|consen  344 TLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGD-----FRCG-GPEELGCLTSSPC  417 (498)
T ss_pred             ccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccc-----cccC-CccccCCCCCCCC
Confidence            34566777765422        11111        112   2367778887764432     1111 1110000112222


Q ss_pred             C----CccEEe--cCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--
Q 044605          282 E----VLPWEI--GSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--  353 (405)
Q Consensus       282 ~----~l~l~i--~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--  353 (405)
                      +    .++=++  +-..++.+|.++-  ..-.+|++.+|.++.+|.+         .+.+| .+++++++ +..+...  
T Consensus       418 P~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~---------~~~~l-~~dls~n~-i~~Lsn~tf  484 (498)
T KOG4237|consen  418 PPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDE---------LLRSL-LLDLSNNR-ISSLSNYTF  484 (498)
T ss_pred             CCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhcccCHH---------HHhhh-hcccccCc-eehhhcccc
Confidence            1    111111  2234455655331  2346678888888888865         34666 67777754 4444333  


Q ss_pred             CCcCCccEEeec
Q 044605          354 GLLPSVVYLSIY  365 (405)
Q Consensus       354 ~~~~~L~~L~i~  365 (405)
                      ...+.|.+|.++
T Consensus       485 ~n~tql~tlils  496 (498)
T KOG4237|consen  485 SNMTQLSTLILS  496 (498)
T ss_pred             cchhhhheeEEe
Confidence            233455555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.54  E-value=8.5e-10  Score=103.54  Aligned_cols=260  Identities=17%  Similarity=0.061  Sum_probs=120.7

Q ss_pred             CCccEEEEEeeCCC-----CCCcccCCCCCCCccEEEEEcCCCCC------cC-CCCCCCCCccEEeecCCCCCeeeCC-
Q 044605          123 YGLKELKVQNYGGT-----KFPAWLGQSSFENLVVLRFRNCNQCT------SL-PSVGHLPLLKNLVIKGMGRMAKAGT-  189 (405)
Q Consensus       123 ~~L~~L~l~~~~~~-----~lp~~~~~~~l~~L~~L~l~~~~~~~------~l-~~l~~l~~L~~L~l~~~~~l~~~~~-  189 (405)
                      .+|+.+.+.++...     .++..+.  ..++++.++++++....      .+ ..+..+++|+.|+++++......+. 
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALR--PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHh--hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            33666666665431     1222222  44556666665554210      00 0244466666666666543222111 


Q ss_pred             CCCCCCCCCCCCcccEEeeccCccccc---cCC---CCC-CcccEEEEeccCC-------ccccCCCCCCcceEEEcCcC
Q 044605          190 TGGDQQAAKGFPCLRELSIINCSKLKG---RLP---QHF-SSLERIVIMSCEQ-------LLVSCTTLPLLCELEIDGFG  255 (405)
Q Consensus       190 ~~~~~~~~~~~~~L~~L~l~~~~~l~~---~l~---~~~-~~L~~L~l~~c~~-------l~~~l~~l~~L~~L~l~~~~  255 (405)
                      +..   .... ++|++|++++|.--..   .+.   ..+ ++|+.|++++|.-       +...+..+++|+.|++++|.
T Consensus       101 ~~~---l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116         101 LES---LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHH---Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence            111   0001 3466777666532110   111   123 6667777766541       12334445667777777664


Q ss_pred             CccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCC-CCcccCCC
Q 044605          256 EVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGL-ESLSFVRN  332 (405)
Q Consensus       256 ~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~-~~l~~l~~  332 (405)
                      ........+ ...+.....|  +++++|....     .....++..+..+++|+.|+++++.+++.....+ ..++  ..
T Consensus       177 l~~~~~~~l-~~~l~~~~~L~~L~L~~n~i~~-----~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~--~~  248 (319)
T cd00116         177 IGDAGIRAL-AEGLKANCNLEVLDLNNNGLTD-----EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL--SP  248 (319)
T ss_pred             CchHHHHHH-HHHHHhCCCCCEEeccCCccCh-----HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh--cc
Confidence            331000000 0112223344  5555552110     0011233455677889999998877664211100 0000  12


Q ss_pred             CCCcCEEeeecCCCC----cccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccc-cccCeeEecceE
Q 044605          333 LTSLERLELSRCPIL----KSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLV-ADIPFVQLNHKL  397 (405)
Q Consensus       333 l~~L~~L~l~~c~~l----~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i-~~i~~~~~~~~~  397 (405)
                      .+.|+.|++++|...    ..+... ...++|++++++++.--.+.+ ..-..+|... .++..++++++-
T Consensus       249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA-QLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH-HHHHHHHhhcCCchhhcccCCCC
Confidence            478899999887532    111111 222588899998874322211 1123344444 677777777653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.54  E-value=2.3e-08  Score=104.34  Aligned_cols=204  Identities=21%  Similarity=0.195  Sum_probs=115.7

Q ss_pred             hccCcccccCchhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCC
Q 044605           10 RLRRMETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVN   89 (405)
Q Consensus        10 ~lr~l~~l~~~~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~   89 (405)
                      .++.+..+|..+.+. .+|||||++++.++.+|.++++|+.|.+|++...+..... ......+.+|+ +|.+..-..  
T Consensus       580 ~~~~l~~LP~~I~~L-i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr-~L~l~~s~~--  654 (889)
T KOG4658|consen  580 GNSSLSKLPSSIGEL-VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLR-VLRLPRSAL--  654 (889)
T ss_pred             CCCccCcCChHHhhh-hhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhccccc-EEEeecccc--
Confidence            455667788777754 4999999999999999999999999999997655543222 33334466677 776654220  


Q ss_pred             ChhhhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCC-CCccEEEEEcCCCCCcCCCCC
Q 044605           90 VAEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSF-ENLVVLRFRNCNQCTSLPSVG  168 (405)
Q Consensus        90 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l-~~L~~L~l~~~~~~~~l~~l~  168 (405)
                      .                    .....+..+..+.+|+.+.+.......+-+......+ +..+.+.+..+...+...+++
T Consensus       655 ~--------------------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~  714 (889)
T KOG4658|consen  655 S--------------------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLG  714 (889)
T ss_pred             c--------------------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccc
Confidence            0                    0111223334455555555533222000000110011 112233333344445555677


Q ss_pred             CCCCccEEeecCCCCCeeeCC-CCCCCCCCC-CCCcccEEeeccCccccccCCC-CCCcccEEEEeccCCccccC
Q 044605          169 HLPLLKNLVIKGMGRMAKAGT-TGGDQQAAK-GFPCLRELSIINCSKLKGRLPQ-HFSSLERIVIMSCEQLLVSC  240 (405)
Q Consensus       169 ~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~-~~~~L~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c~~l~~~l  240 (405)
                      .+.+|+.|.|.+|...+.... ...  .... .|+++..+.+.+|...++..+. ..|+|+.|.+..|+.+...+
T Consensus       715 ~l~~L~~L~i~~~~~~e~~~~~~~~--~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  715 SLGNLEELSILDCGISEIVIEWEES--LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             cccCcceEEEEcCCCchhhcccccc--cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence            788888888888765543322 110  0111 2666777777777666643332 66888888888887663333

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=3.7e-08  Score=91.41  Aligned_cols=200  Identities=17%  Similarity=0.167  Sum_probs=120.7

Q ss_pred             CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC---C-CCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP---S-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA  197 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~---~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  197 (405)
                      +.+|+...+.++.....+..--...|++++.|+++++- +....   . ..+||+|+.|.++.+...-.+.     ....
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-----s~~~  193 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-----SNTT  193 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCcc-----ccch
Confidence            56677777777665544431111368999999998875 22111   1 4579999999998753222221     1223


Q ss_pred             CCCCcccEEeeccCcc-ccc--cCCCCCCcccEEEEeccCCc-ccc--CCCCCCcceEEEcCcCCccccccccc-cCCCC
Q 044605          198 KGFPCLRELSIINCSK-LKG--RLPQHFSSLERIVIMSCEQL-LVS--CTTLPLLCELEIDGFGEVAWINRPVE-AGIFD  270 (405)
Q Consensus       198 ~~~~~L~~L~l~~~~~-l~~--~l~~~~~~L~~L~l~~c~~l-~~~--l~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~~  270 (405)
                      ..++.|+.|.+..|.- .++  ++...||+|+.|++..+..+ ...  ..-+..|+.|++++|+.+.     ++ .....
T Consensus       194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-----~~~~~~~~  268 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-----FDQGYKVG  268 (505)
T ss_pred             hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-----cccccccc
Confidence            3589999999999842 111  23347999999999887433 222  2237789999999998763     22 11223


Q ss_pred             CCCCC--eeecCCCCccEEecCCCCcccccc-----cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeec
Q 044605          271 SSNPG--PEKSRTEVLPWEIGSPDQESLPEG-----LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSR  343 (405)
Q Consensus       271 ~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~-----~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~  343 (405)
                      .++.|  +.++.|..-.       + ..|+.     ...+++|+.|++..|.+.++++-.     .+..+++|+.|.+..
T Consensus       269 ~l~~L~~Lnls~tgi~s-------i-~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~-----~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIAS-------I-AEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN-----HLRTLENLKHLRITL  335 (505)
T ss_pred             cccchhhhhccccCcch-------h-cCCCccchhhhcccccceeeecccCccccccccc-----hhhccchhhhhhccc
Confidence            44444  5555552221       0 12332     358899999999988887765421     134556677777655


Q ss_pred             CC
Q 044605          344 CP  345 (405)
Q Consensus       344 c~  345 (405)
                      +.
T Consensus       336 n~  337 (505)
T KOG3207|consen  336 NY  337 (505)
T ss_pred             cc
Confidence            43

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=5e-08  Score=90.58  Aligned_cols=199  Identities=19%  Similarity=0.211  Sum_probs=125.6

Q ss_pred             CCCCCccEEEEEcCCCCCcCC---CCCCCCCccEEeecCCC--CCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC
Q 044605          145 SSFENLVVLRFRNCNQCTSLP---SVGHLPLLKNLVIKGMG--RMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP  219 (405)
Q Consensus       145 ~~l~~L~~L~l~~~~~~~~l~---~l~~l~~L~~L~l~~~~--~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~  219 (405)
                      ++++.|++..+.++. +..++   ....+|+++.|+++++-  +...+..      .+..+|+|+.|+++.. .+.....
T Consensus       118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~------i~eqLp~Le~LNls~N-rl~~~~~  189 (505)
T KOG3207|consen  118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLK------IAEQLPSLENLNLSSN-RLSNFIS  189 (505)
T ss_pred             hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHH------HHHhcccchhcccccc-cccCCcc
Confidence            468889999998876 55555   25569999999998641  1111211      2346999999999874 4432111


Q ss_pred             ----CCCCcccEEEEeccCCc----cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEec
Q 044605          220 ----QHFSSLERIVIMSCEQL----LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIG  289 (405)
Q Consensus       220 ----~~~~~L~~L~l~~c~~l----~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~  289 (405)
                          ..+++|+.|.+++|.--    ...+..+|+|+.|.+..|....     .......-+..|  |+++++..+     
T Consensus       190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-----~~~~~~~i~~~L~~LdLs~N~li-----  259 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-----IKATSTKILQTLQELDLSNNNLI-----  259 (505)
T ss_pred             ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-----eecchhhhhhHHhhccccCCccc-----
Confidence                26899999999999732    3344568999999999985331     122222333344  677776333     


Q ss_pred             CCCCcccc--cccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC--CcccCCCCCcCCccEEeec
Q 044605          290 SPDQESLP--EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI--LKSFPENGLLPSVVYLSIY  365 (405)
Q Consensus       290 ~~~l~~lp--~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~--l~~l~~~~~~~~L~~L~i~  365 (405)
                           ..+  ...+.|+.|+.|.++.+.+.+|-.-.-+++-....+++|+.|++..|+-  ...+.......+|+.|.+.
T Consensus       260 -----~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  260 -----DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             -----ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence                 333  3467899999999998888775322112233346789999999999754  2222222334466655544


Q ss_pred             C
Q 044605          366 L  366 (405)
Q Consensus       366 ~  366 (405)
                      .
T Consensus       335 ~  335 (505)
T KOG3207|consen  335 L  335 (505)
T ss_pred             c
Confidence            3

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.34  E-value=2.4e-07  Score=86.87  Aligned_cols=242  Identities=17%  Similarity=0.082  Sum_probs=140.6

Q ss_pred             CCCCccEEEEEcCCCCC-----cCC-CCCCCCCccEEeecCCCCCeeeCC-CCCCCCCCCCCCcccEEeeccCccccc--
Q 044605          146 SFENLVVLRFRNCNQCT-----SLP-SVGHLPLLKNLVIKGMGRMAKAGT-TGGDQQAAKGFPCLRELSIINCSKLKG--  216 (405)
Q Consensus       146 ~l~~L~~L~l~~~~~~~-----~l~-~l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~--  216 (405)
                      .+.+|+.+++++|. ++     .++ .+...++++++++.++..- ..+. ...-......+++|++|++++|..-..  
T Consensus        21 ~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          21 KLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETG-RIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccC-CcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            46779999999987 32     233 2556788999999875422 1010 000000112377999999998754221  


Q ss_pred             -c---CCCCCCcccEEEEeccCCc-------cccCCCC-CCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCC
Q 044605          217 -R---LPQHFSSLERIVIMSCEQL-------LVSCTTL-PLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTE  282 (405)
Q Consensus       217 -~---l~~~~~~L~~L~l~~c~~l-------~~~l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~  282 (405)
                       .   ++.. ++|++|++++|..-       ...+..+ ++|+.|++++|..... ....-...+..++.|  +++++|.
T Consensus        99 ~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116          99 GVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA-SCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch-HHHHHHHHHHhCCCcCEEECcCCC
Confidence             1   1123 56999999987532       2345566 8999999999975420 000011234455566  7777762


Q ss_pred             CccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCCCCccc-----CCC--C
Q 044605          283 VLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCPILKSF-----PEN--G  354 (405)
Q Consensus       283 ~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~~l~~l-----~~~--~  354 (405)
                      -..     ..+..++..+..+++|+.|+++++.++.....   .+.. +..+++|++|++++|+. ++.     ...  .
T Consensus       177 l~~-----~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~---~l~~~~~~~~~L~~L~ls~n~l-~~~~~~~l~~~~~~  247 (319)
T cd00116         177 IGD-----AGIRALAEGLKANCNLEVLDLNNNGLTDEGAS---ALAETLASLKSLEVLNLGDNNL-TDAGAAALASALLS  247 (319)
T ss_pred             Cch-----HHHHHHHHHHHhCCCCCEEeccCCccChHHHH---HHHHHhcccCCCCEEecCCCcC-chHHHHHHHHHHhc
Confidence            210     00112344455678999999999776532211   0110 45788999999999863 321     111  1


Q ss_pred             CcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEeeCC
Q 044605          355 LLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVFDP  401 (405)
Q Consensus       355 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~  401 (405)
                      ..+.|+.|++.+|. +.+.....-.+......+++.+.+.++.+.+.
T Consensus       248 ~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         248 PNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             cCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            13699999999994 32111111122334457888888888877643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.21  E-value=9.1e-06  Score=76.96  Aligned_cols=161  Identities=19%  Similarity=0.260  Sum_probs=96.1

Q ss_pred             CCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC-cccEEeeccCccccccCCCC-CCcccEEEEeccCCccccCCCCCC
Q 044605          168 GHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP-CLRELSIINCSKLKGRLPQH-FSSLERIVIMSCEQLLVSCTTLPL  245 (405)
Q Consensus       168 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~l~~~-~~~L~~L~l~~c~~l~~~l~~l~~  245 (405)
                      ..+++++.|++.+| .+..+|.          +| +|++|.+.+|..++ .+|.. .++|+.|.+.+|..++ .+  .++
T Consensus        49 ~~~~~l~~L~Is~c-~L~sLP~----------LP~sLtsL~Lsnc~nLt-sLP~~LP~nLe~L~Ls~Cs~L~-sL--P~s  113 (426)
T PRK15386         49 EEARASGRLYIKDC-DIESLPV----------LPNELTEITIENCNNLT-TLPGSIPEGLEKLTVCHCPEIS-GL--PES  113 (426)
T ss_pred             HHhcCCCEEEeCCC-CCcccCC----------CCCCCcEEEccCCCCcc-cCCchhhhhhhheEccCccccc-cc--ccc
Confidence            34688999999988 6777654          44 79999999998887 57753 4579999999987663 22  246


Q ss_pred             cceEEEcCcCC--ccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcccccccCCC-CCccEEEEeCCcccccccC
Q 044605          246 LCELEIDGFGE--VAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKL-SHITRISIVGSYLVSFPKG  322 (405)
Q Consensus       246 L~~L~l~~~~~--l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l-~~L~~L~l~~~~l~~l~~~  322 (405)
                      |+.|.+..+..  +.    .+|.    ++.. |.+.++...       ....+|.   .+ ++|+.|+++++....+|..
T Consensus       114 Le~L~L~~n~~~~L~----~LPs----sLk~-L~I~~~n~~-------~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~  174 (426)
T PRK15386        114 VRSLEIKGSATDSIK----NVPN----GLTS-LSINSYNPE-------NQARIDN---LISPSLKTLSLTGCSNIILPEK  174 (426)
T ss_pred             cceEEeCCCCCcccc----cCcc----hHhh-eeccccccc-------ccccccc---ccCCcccEEEecCCCcccCccc
Confidence            78888765321  22    2222    2222 233221000       0011111   23 5788888888555444532


Q ss_pred             CCCCcccCCCCCCcCEEeeecCCCC-cccCCCCCcCCccEEeecCCcchHH
Q 044605          323 GLESLSFVRNLTSLERLELSRCPIL-KSFPENGLLPSVVYLSIYLCPDLEE  372 (405)
Q Consensus       323 ~~~~l~~l~~l~~L~~L~l~~c~~l-~~l~~~~~~~~L~~L~i~~c~~l~~  372 (405)
                          +|     .+|+.|.++.+... -.++....|+++ .|.+.+|.++..
T Consensus       175 ----LP-----~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~  215 (426)
T PRK15386        175 ----LP-----ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP  215 (426)
T ss_pred             ----cc-----ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence                22     57888888764311 123444566677 888888866543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.14  E-value=2.5e-08  Score=92.04  Aligned_cols=110  Identities=21%  Similarity=0.294  Sum_probs=67.0

Q ss_pred             CCccEEEEEeeCCCCCCc-ccCCCCCCCccEEEEEcCCCCCcCC--CCC-CCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605          123 YGLKELKVQNYGGTKFPA-WLGQSSFENLVVLRFRNCNQCTSLP--SVG-HLPLLKNLVIKGMGRMAKAGTTGGDQQAAK  198 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~-~~~~~~l~~L~~L~l~~~~~~~~l~--~l~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  198 (405)
                      ..|+.|.+.++....... ......++|+++|.+.+|..+++-.  ++. ..++|+++++..|..+....-    ...+.
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L----k~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL----KYLAE  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH----HHHHH
Confidence            456777777765433321 1112367888888888887666432  222 367788888877776655422    11234


Q ss_pred             CCCcccEEeeccCccccc----cCCCCCCcccEEEEeccCCc
Q 044605          199 GFPCLRELSIINCSKLKG----RLPQHFSSLERIVIMSCEQL  236 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~----~l~~~~~~L~~L~l~~c~~l  236 (405)
                      ++++|++++++.|+.+++    .+..+...++.+...+|.++
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~  255 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL  255 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence            588888888888877765    22235666677766677654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.05  E-value=1.9e-06  Score=72.55  Aligned_cols=60  Identities=17%  Similarity=0.162  Sum_probs=26.4

Q ss_pred             CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-----CCcCCccEEeecCC
Q 044605          302 KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-----GLLPSVVYLSIYLC  367 (405)
Q Consensus       302 ~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c  367 (405)
                      .+|+|++|++++|++.++.+-     ..+..+++|+.|++.+||.- .-+..     ..+|+|+.||-...
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l-----~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNEL-----EPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCC-----GGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEET
T ss_pred             hCCcCCEEECcCCcCCChHHh-----HHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEc
Confidence            577788888877777765432     22566777888888777642 23322     12356666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.03  E-value=9.2e-06  Score=55.93  Aligned_cols=57  Identities=28%  Similarity=0.483  Sum_probs=35.6

Q ss_pred             CCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCC
Q 044605          304 SHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLC  367 (405)
Q Consensus       304 ~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c  367 (405)
                      |+|++|++++|+++.+|...|      .++++|++|++++| .++.++..  ..+++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f------~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSF------SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTT------TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHH------cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            456677777777777766554      56667777777754 44555443  44456777777665

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.02  E-value=1.2e-05  Score=55.42  Aligned_cols=46  Identities=24%  Similarity=0.469  Sum_probs=38.4

Q ss_pred             ccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          294 ESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       294 ~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      +.+|. .+.++++|+.|++++|.++.++...|      .++++|++|++++|+
T Consensus        14 ~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f------~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   14 TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAF------SNLPNLRYLDLSNNN   60 (61)
T ss_dssp             SEECTTTTTTGTTESEEEETSSSESEEETTTT------TTSTTESEEEETSSS
T ss_pred             CccCHHHHcCCCCCCEeEccCCccCccCHHHH------cCCCCCCEEeCcCCc
Confidence            34443 56789999999999999999988765      889999999999875

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.01  E-value=1.3e-06  Score=73.51  Aligned_cols=123  Identities=24%  Similarity=0.304  Sum_probs=40.0

Q ss_pred             CCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCC
Q 044605          121 PHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGF  200 (405)
Q Consensus       121 ~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  200 (405)
                      .+.+++.|++.++....+. .++ ..+.+|+.|++++|. ++.++++..++.|++|++.++. +..+..     .....+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-~L~-~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~-I~~i~~-----~l~~~l   87 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-NLG-ATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR-ISSISE-----GLDKNL   87 (175)
T ss_dssp             --------------------S---TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CH-----HHHHH-
T ss_pred             ccccccccccccccccccc-chh-hhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC-CCcccc-----chHHhC
Confidence            3456788888888766553 232 246888899998887 7888888888899999888753 444421     001137


Q ss_pred             CcccEEeeccCccccccCC-----CCCCcccEEEEeccCCc------cccCCCCCCcceEEEcCc
Q 044605          201 PCLRELSIINCSKLKGRLP-----QHFSSLERIVIMSCEQL------LVSCTTLPLLCELEIDGF  254 (405)
Q Consensus       201 ~~L~~L~l~~~~~l~~~l~-----~~~~~L~~L~l~~c~~l------~~~l~~l~~L~~L~l~~~  254 (405)
                      |+|++|++.+. .+.+ +.     ..+|+|+.|++.+++--      ...+..+|+|+.||-...
T Consensus        88 p~L~~L~L~~N-~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   88 PNLQELYLSNN-KISD-LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             TT--EEE-TTS----S-CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             CcCCEEECcCC-cCCC-hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            88888888763 3332 11     15777888887775522      122333677777765543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.80  E-value=1.4e-05  Score=77.38  Aligned_cols=167  Identities=28%  Similarity=0.400  Sum_probs=91.2

Q ss_pred             CCccEEEEEeeCCCCCCcccCCCCCC-CccEEEEEcCCCCCcCC-CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCC
Q 044605          123 YGLKELKVQNYGGTKFPAWLGQSSFE-NLVVLRFRNCNQCTSLP-SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGF  200 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~~~~~~~l~-~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  200 (405)
                      ..+..+.+.++....+|....  .+. +|+.|+++++. +..+| +++.+++|+.|++.++. +..++.      .....
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~--~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~------~~~~~  185 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIG--LLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPK------LLSNL  185 (394)
T ss_pred             cceeEEecCCcccccCccccc--cchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhh------hhhhh
Confidence            556666666666666666555  443 67777777665 55554 46667777777776643 333333      01135


Q ss_pred             CcccEEeeccCccccccCCC--CCCc-ccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC
Q 044605          201 PCLRELSIINCSKLKGRLPQ--HFSS-LERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG  275 (405)
Q Consensus       201 ~~L~~L~l~~~~~l~~~l~~--~~~~-L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L  275 (405)
                      +.|+.|++++. .+. .+|.  ..++ |+++.+.+..  ..+..+..+.++..+.+.+++                    
T Consensus       186 ~~L~~L~ls~N-~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~--------------------  243 (394)
T COG4886         186 SNLNNLDLSGN-KIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK--------------------  243 (394)
T ss_pred             hhhhheeccCC-ccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce--------------------
Confidence            66666666663 444 3443  1333 5666555542  223333334444444433322                    


Q ss_pred             eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          276 PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       276 l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                                       +..++..+..+++++.|++++|.+++++.        +..+.++++|+++++..
T Consensus       244 -----------------~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--------~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         244 -----------------LEDLPESIGNLSNLETLDLSNNQISSISS--------LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             -----------------eeeccchhccccccceecccccccccccc--------ccccCccCEEeccCccc
Confidence                             22234455566667777777777766654        24566677777766543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.80  E-value=4.7e-06  Score=74.21  Aligned_cols=200  Identities=19%  Similarity=0.265  Sum_probs=117.5

Q ss_pred             CCCccEEEEEeeCCCC-----CCccc--CCCCCCCccEEEEEcCCCCCcCCCCC-CCCCccEEeecCCC--CCeee-CC-
Q 044605          122 HYGLKELKVQNYGGTK-----FPAWL--GQSSFENLVVLRFRNCNQCTSLPSVG-HLPLLKNLVIKGMG--RMAKA-GT-  189 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~-----lp~~~--~~~~l~~L~~L~l~~~~~~~~l~~l~-~l~~L~~L~l~~~~--~l~~~-~~-  189 (405)
                      +..|..|.+.+..+..     .|..+  ....|++|..+.+++|.. ..+-++. .-|.|.++.+....  ..+.+ |. 
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~  259 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNTTIQDVPSLLPET  259 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hheeceeecCchhheeeeecccccccccccchh
Confidence            5677788776644321     12111  122578899999998872 2222221 24667777764321  11111 11 


Q ss_pred             -----CCC-C-------CCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccCCc-cccCCCCCCcceEEEc
Q 044605          190 -----TGG-D-------QQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCEQL-LVSCTTLPLLCELEID  252 (405)
Q Consensus       190 -----~~~-~-------~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~  252 (405)
                           .+. .       ...+..-+.|+++++++. .++. +-.   -.|.++.|+++.+.-. ...+..+++|+.|+++
T Consensus       260 ~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~-iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS  337 (490)
T KOG1259|consen  260 ILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQ-IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLS  337 (490)
T ss_pred             hhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhh-hhhhhhhccceeEEeccccceeeehhhhhcccceEeecc
Confidence                 111 0       112334568888998884 3332 221   5788999999886533 4567789999999999


Q ss_pred             CcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccC
Q 044605          253 GFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFV  330 (405)
Q Consensus       253 ~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l  330 (405)
                      +|...+      ..++-.++.++  +.++++          .+..+ .+++.+-+|+.|++++|+++.+.+-     ..+
T Consensus       338 ~N~Ls~------~~Gwh~KLGNIKtL~La~N----------~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV-----~~I  395 (490)
T KOG1259|consen  338 GNLLAE------CVGWHLKLGNIKTLKLAQN----------KIETL-SGLRKLYSLVNLDLSSNQIEELDEV-----NHI  395 (490)
T ss_pred             cchhHh------hhhhHhhhcCEeeeehhhh----------hHhhh-hhhHhhhhheeccccccchhhHHHh-----ccc
Confidence            875443      11122334344  444443          22222 2567888899999999888876432     126


Q ss_pred             CCCCCcCEEeeecCCC
Q 044605          331 RNLTSLERLELSRCPI  346 (405)
Q Consensus       331 ~~l~~L~~L~l~~c~~  346 (405)
                      +++|.|+++.+.+||.
T Consensus       396 G~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  396 GNLPCLETLRLTGNPL  411 (490)
T ss_pred             ccccHHHHHhhcCCCc
Confidence            7899999999999884

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=0.0001  Score=70.01  Aligned_cols=123  Identities=18%  Similarity=0.239  Sum_probs=78.9

Q ss_pred             HhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCC
Q 044605          115 VLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQ  194 (405)
Q Consensus       115 ~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  194 (405)
                      +...+..+.++..|++.+|....+|.     -..+|++|.+++|..++.+|..- .++|+.|.+.+|..+..++      
T Consensus        44 a~~r~~~~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP------  111 (426)
T PRK15386         44 ITPQIEEARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP------  111 (426)
T ss_pred             HHHHHHHhcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc------
Confidence            33445556889999999998777773     24679999999999888877522 3689999999887776553      


Q ss_pred             CCCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccC-CccccCCC-C-CCcceEEEcCcCCc
Q 044605          195 QAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCE-QLLVSCTT-L-PLLCELEIDGFGEV  257 (405)
Q Consensus       195 ~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~-~l~~~l~~-l-~~L~~L~l~~~~~l  257 (405)
                            ++|+.|++.+ .... .++.-.++|+.|.+.++. .....++. + ++|++|.+.+|...
T Consensus       112 ------~sLe~L~L~~-n~~~-~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        112 ------ESVRSLEIKG-SATD-SIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             ------cccceEEeCC-CCCc-ccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence                  3677777754 2222 233333567777764322 11112221 2 47788888777654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.53  E-value=6.7e-06  Score=73.22  Aligned_cols=127  Identities=15%  Similarity=0.135  Sum_probs=85.7

Q ss_pred             eeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccccCC
Q 044605           26 VIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDS  105 (405)
Q Consensus        26 ~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~~~  105 (405)
                      +.|+.+|||+|.|+.+..++.-++.++.|++..      +.+..++                                  
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~------N~i~~v~----------------------------------  323 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQ------NRIRTVQ----------------------------------  323 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccc------cceeeeh----------------------------------
Confidence            567788888888888877777777777775311      1111111                                  


Q ss_pred             hhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCe
Q 044605          106 REVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMA  185 (405)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~  185 (405)
                                  .+..+++|+.|++++|....+..|-.  .+.|++.|.++.|. +.++.+++++=+|..|++.++. ++
T Consensus       324 ------------nLa~L~~L~~LDLS~N~Ls~~~Gwh~--KLGNIKtL~La~N~-iE~LSGL~KLYSLvnLDl~~N~-Ie  387 (490)
T KOG1259|consen  324 ------------NLAELPQLQLLDLSGNLLAECVGWHL--KLGNIKTLKLAQNK-IETLSGLRKLYSLVNLDLSSNQ-IE  387 (490)
T ss_pred             ------------hhhhcccceEeecccchhHhhhhhHh--hhcCEeeeehhhhh-HhhhhhhHhhhhheeccccccc-hh
Confidence                        23345667778888877777766755  78888999998877 7788888888888999887753 33


Q ss_pred             eeCCCCCCCCCCCCCCcccEEeeccCc
Q 044605          186 KAGTTGGDQQAAKGFPCLRELSIINCS  212 (405)
Q Consensus       186 ~~~~~~~~~~~~~~~~~L~~L~l~~~~  212 (405)
                      .+..    ....+.+|+|+.+.+.+.+
T Consensus       388 ~lde----V~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  388 ELDE----VNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hHHH----hcccccccHHHHHhhcCCC
Confidence            3322    0113348888888877754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.51  E-value=0.00011  Score=71.26  Aligned_cols=65  Identities=25%  Similarity=0.372  Sum_probs=50.3

Q ss_pred             ccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCC
Q 044605          295 SLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLC  367 (405)
Q Consensus       295 ~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c  367 (405)
                      ..+..+.++.++..+.+.+++++.++..       +..++++++|++++| .+.+++......+++.|++++.
T Consensus       223 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~-------~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         223 ELLSSLSNLKNLSGLELSNNKLEDLPES-------IGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             ecchhhhhcccccccccCCceeeeccch-------hccccccceeccccc-cccccccccccCccCEEeccCc
Confidence            3445667888888888888888876544       578889999999985 6788876655679999999885

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.51  E-value=5.6e-06  Score=79.71  Aligned_cols=160  Identities=18%  Similarity=0.195  Sum_probs=70.2

Q ss_pred             EEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC-CCCCCCCccEEeecCCCCCeeeCC-CCCCCCCCCCCCcccEEe
Q 044605          130 VQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP-SVGHLPLLKNLVIKGMGRMAKAGT-TGGDQQAAKGFPCLRELS  207 (405)
Q Consensus       130 l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~  207 (405)
                      +..+....+|....  .|..|+.+.+.+|. +..+| ++..+..|..++++.+ .+..++. .+        +--|+.|-
T Consensus        82 lsrNR~~elp~~~~--~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC--------~lpLkvli  149 (722)
T KOG0532|consen   82 LSRNRFSELPEEAC--AFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLC--------DLPLKVLI  149 (722)
T ss_pred             ccccccccCchHHH--HHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhh--------cCcceeEE
Confidence            33344444444333  34445555554433 22332 3445555555555432 1222222 11        11244444


Q ss_pred             eccCccccccCCC---CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCC
Q 044605          208 IINCSKLKGRLPQ---HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTE  282 (405)
Q Consensus       208 l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~  282 (405)
                      +++ ++++ .+|.   ..+.|..|+++.|.  .+|..+..+.+|+.|.+..|+.+     .+|.+.. .|+-        
T Consensus       150 ~sN-Nkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-----~lp~El~-~LpL--------  213 (722)
T KOG0532|consen  150 VSN-NKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-----DLPEELC-SLPL--------  213 (722)
T ss_pred             Eec-Cccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-----hCCHHHh-CCce--------
Confidence            444 2343 3332   34555555555443  33455555555555555555444     2232111 1111        


Q ss_pred             CccEEecCCCCcccccccCCCCCccEEEEeCCcccc
Q 044605          283 VLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVS  318 (405)
Q Consensus       283 ~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~  318 (405)
                       ++++++||++..+|..|.+++.|+.|-+.+|-+.+
T Consensus       214 -i~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  214 -IRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             -eeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence             11222444555666666666666666666555553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.50  E-value=5.5e-05  Score=48.03  Aligned_cols=31  Identities=19%  Similarity=0.155  Sum_probs=26.6

Q ss_pred             eeEEEEEccCCCCccCccccCCCccCcccCc
Q 044605           26 VIYLILVGDLTESKEMPLRIGKLTSLRTLTK   56 (405)
Q Consensus        26 ~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~   56 (405)
                      ++|++|++++|+|+.+|..+++|++|++|++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l   31 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNL   31 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEE
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEe
Confidence            3689999999999999999999999999974

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.40  E-value=2.6e-06  Score=78.98  Aligned_cols=200  Identities=16%  Similarity=0.146  Sum_probs=122.9

Q ss_pred             CCccEEEEEcCCCCCcCCC---CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCcccccc----CCC
Q 044605          148 ENLVVLRFRNCNQCTSLPS---VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGR----LPQ  220 (405)
Q Consensus       148 ~~L~~L~l~~~~~~~~l~~---l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----l~~  220 (405)
                      ..|+.|.+.+|..+.+-+.   ....|++++|.+.+|..+....-    ...+..++.|+.+++..|..+++.    +..
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~----~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL----LSLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH----HHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            5678888888876554321   34578888888888875443311    012335788888888888877752    334


Q ss_pred             CCCcccEEEEeccCCccc-----cCCCCCCcceEEEcCcCCccccccccccCCC----CCCCCC--eeecCCCCccEEec
Q 044605          221 HFSSLERIVIMSCEQLLV-----SCTTLPLLCELEIDGFGEVAWINRPVEAGIF----DSSNPG--PEKSRTEVLPWEIG  289 (405)
Q Consensus       221 ~~~~L~~L~l~~c~~l~~-----~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~----~~l~~L--l~l~~~~~l~l~i~  289 (405)
                      .+++|+++.+++|+.+..     ....+..++.+...||....       .+.+    .....+  +++..|.       
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~-------le~l~~~~~~~~~i~~lnl~~c~-------  279 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE-------LEALLKAAAYCLEILKLNLQHCN-------  279 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc-------HHHHHHHhccChHhhccchhhhc-------
Confidence            788888888888876622     22335556666666665442       1111    111111  2222443       


Q ss_pred             CCCCcccc--cccCCCCCccEEEEeC-CcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC---CCcCCccEEe
Q 044605          290 SPDQESLP--EGLHKLSHITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN---GLLPSVVYLS  363 (405)
Q Consensus       290 ~~~l~~lp--~~~~~l~~L~~L~l~~-~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~  363 (405)
                        .++...  ..-.+++.|+.|..++ ..+++.+-+.   |  -.++++|+.|.+..|..+++....   ...+.|+.++
T Consensus       280 --~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a---L--g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~  352 (483)
T KOG4341|consen  280 --QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA---L--GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD  352 (483)
T ss_pred             --cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH---H--hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence              333322  1123678889998888 5555543322   2  367899999999999987766432   4557899999


Q ss_pred             ecCCcchHH
Q 044605          364 IYLCPDLEE  372 (405)
Q Consensus       364 i~~c~~l~~  372 (405)
                      +.+|.....
T Consensus       353 ~e~~~~~~d  361 (483)
T KOG4341|consen  353 LEECGLITD  361 (483)
T ss_pred             ccccceehh
Confidence            999966544

>PLN03150 hypothetical protein; Provisional

Probab=97.31  E-value=0.00033  Score=71.76  Aligned_cols=102  Identities=17%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             cceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCccc-ccccC
Q 044605          246 LCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLV-SFPKG  322 (405)
Q Consensus       246 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~-~l~~~  322 (405)
                      ++.|+++++...+    .++. .+..+.+|  |+++++...         +.+|..+..+++|+.|++++|++. .+|+.
T Consensus       420 v~~L~L~~n~L~g----~ip~-~i~~L~~L~~L~Ls~N~l~---------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~  485 (623)
T PLN03150        420 IDGLGLDNQGLRG----FIPN-DISKLRHLQSINLSGNSIR---------GNIPPSLGSITSLEVLDLSYNSFNGSIPES  485 (623)
T ss_pred             EEEEECCCCCccc----cCCH-HHhCCCCCCEEECCCCccc---------CcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence            5556666654433    3332 45555555  666655221         256666777777777777777666 45554


Q ss_pred             CCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          323 GLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       323 ~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                             +.++++|+.|++++|.....+|..  ..+.++..+++.+++
T Consensus       486 -------l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        486 -------LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             -------HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence                   567777777777777665566654  222345566666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.30  E-value=0.00021  Score=45.31  Aligned_cols=40  Identities=23%  Similarity=0.504  Sum_probs=29.8

Q ss_pred             CCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605          304 SHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP  351 (405)
Q Consensus       304 ~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~  351 (405)
                      ++|++|++++|+++++|..       +.++++|++|++++|+ +++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~-------l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPE-------LSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGH-------GTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCCCCcccCch-------HhCCCCCCEEEecCCC-CCCCc
Confidence            4688888888888888764       5788899999998874 56665

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.00  E-value=0.00023  Score=37.73  Aligned_cols=22  Identities=14%  Similarity=0.004  Sum_probs=19.1

Q ss_pred             eEEEEEccCCCCccCccccCCC
Q 044605           27 IYLILVGDLTESKEMPLRIGKL   48 (405)
Q Consensus        27 ~L~~L~L~~~~i~~lP~~i~~L   48 (405)
                      +|++||+++|+++.+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            4899999999999999988765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=1.4e-05  Score=71.24  Aligned_cols=14  Identities=14%  Similarity=0.418  Sum_probs=10.5

Q ss_pred             cCCCCCccEEEEeC
Q 044605          300 LHKLSHITRISIVG  313 (405)
Q Consensus       300 ~~~l~~L~~L~l~~  313 (405)
                      +...|+|.+|++.+
T Consensus       359 l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  359 LNSKPSLVYLDVFG  372 (419)
T ss_pred             eccCcceEEEEecc
Confidence            45778888888876

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=2.9e-05  Score=69.25  Aligned_cols=171  Identities=21%  Similarity=0.321  Sum_probs=101.4

Q ss_pred             CCccEEEEEcCCCCCc--CCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC----C
Q 044605          148 ENLVVLRFRNCNQCTS--LPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP----Q  220 (405)
Q Consensus       148 ~~L~~L~l~~~~~~~~--l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~----~  220 (405)
                      +.|+.|++++-. ++.  +-. +.+..+|+.|.+.+..--..+..      ....=.+|+.|+++.|..++..-.    .
T Consensus       185 sRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~------~iAkN~~L~~lnlsm~sG~t~n~~~ll~~  257 (419)
T KOG2120|consen  185 SRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN------TIAKNSNLVRLNLSMCSGFTENALQLLLS  257 (419)
T ss_pred             hhhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHH------HHhccccceeeccccccccchhHHHHHHH
Confidence            458888887643 332  111 45677777777776543333322      011135788899888887774211    2


Q ss_pred             CCCcccEEEEeccCCcccc----CCC-CCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcc
Q 044605          221 HFSSLERIVIMSCEQLLVS----CTT-LPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQES  295 (405)
Q Consensus       221 ~~~~L~~L~l~~c~~l~~~----l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~  295 (405)
                      .+..|.+|++++|....+.    +.+ -++|+.|+++|+...      +..+                           .
T Consensus       258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn------l~~s---------------------------h  304 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN------LQKS---------------------------H  304 (419)
T ss_pred             hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh------hhhh---------------------------H
Confidence            6888899999988644221    122 368888888886321      1110                           0


Q ss_pred             cccccCCCCCccEEEEeC-Ccccc-cccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC----CCcCCccEEeecCC
Q 044605          296 LPEGLHKLSHITRISIVG-SYLVS-FPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN----GLLPSVVYLSIYLC  367 (405)
Q Consensus       296 lp~~~~~l~~L~~L~l~~-~~l~~-l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~----~~~~~L~~L~i~~c  367 (405)
                      +..-...+|+|..|++++ +.++. ....       +..++.|++|.++.|-.+  +|..    .--++|.+|++.||
T Consensus       305 ~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-------~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  305 LSTLVRRCPNLVHLDLSDSVMLKNDCFQE-------FFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHHHHhCCceeeeccccccccCchHHHH-------HHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            111123777888888887 55543 1111       467888888888888654  2221    22258899999888

>PLN03150 hypothetical protein; Provisional

Probab=96.85  E-value=0.0019  Score=66.27  Aligned_cols=107  Identities=15%  Similarity=0.190  Sum_probs=77.1

Q ss_pred             ccEEEEeccC---CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccc
Q 044605          225 LERIVIMSCE---QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEG  299 (405)
Q Consensus       225 L~~L~l~~c~---~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~  299 (405)
                      ++.|++.++.   .+|..+..+++|+.|++++|...+    .+|. .+..++.|  |+++++...         +.+|..
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g----~iP~-~~~~l~~L~~LdLs~N~ls---------g~iP~~  485 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG----NIPP-SLGSITSLEVLDLSYNSFN---------GSIPES  485 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC----cCCh-HHhCCCCCCEEECCCCCCC---------CCCchH
Confidence            5667776653   346677788999999999987665    4444 56777777  888877332         368888


Q ss_pred             cCCCCCccEEEEeCCccc-ccccCCCCCcccCCC-CCCcCEEeeecCCCCcccCC
Q 044605          300 LHKLSHITRISIVGSYLV-SFPKGGLESLSFVRN-LTSLERLELSRCPILKSFPE  352 (405)
Q Consensus       300 ~~~l~~L~~L~l~~~~l~-~l~~~~~~~l~~l~~-l~~L~~L~l~~c~~l~~l~~  352 (405)
                      +.++++|+.|++++|.+. .+|..       +.. ...+..+++.+|+.+...|.
T Consensus       486 l~~L~~L~~L~Ls~N~l~g~iP~~-------l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        486 LGQLTSLRILNLNGNSLSGRVPAA-------LGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             HhcCCCCCEEECcCCcccccCChH-------HhhccccCceEEecCCccccCCCC
Confidence            999999999999998877 67754       232 24567888888876665553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.78  E-value=0.00026  Score=64.59  Aligned_cols=134  Identities=20%  Similarity=0.186  Sum_probs=73.8

Q ss_pred             CCCCCCccEEEEEeeCCCCCCcccC---CCCCCCccEEEEEcCCC-CCcC----CCCCCCCCccEEeecCCCCCeeeCC-
Q 044605          119 LKPHYGLKELKVQNYGGTKFPAWLG---QSSFENLVVLRFRNCNQ-CTSL----PSVGHLPLLKNLVIKGMGRMAKAGT-  189 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp~~~~---~~~l~~L~~L~l~~~~~-~~~l----~~l~~l~~L~~L~l~~~~~l~~~~~-  189 (405)
                      .+..++|+.+....|.....+....   -...++|+.+.+..+.- ...+    .++.+.|+|++|++.++.....-.. 
T Consensus       153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~  232 (382)
T KOG1909|consen  153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA  232 (382)
T ss_pred             cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence            4456667777666665444332110   01346777777776651 1111    1356778888888876542221111 


Q ss_pred             CCCCCCCCCCCCcccEEeeccCccccc--------cCCCCCCcccEEEEeccCC-------ccccCCCCCCcceEEEcCc
Q 044605          190 TGGDQQAAKGFPCLRELSIINCSKLKG--------RLPQHFSSLERIVIMSCEQ-------LLVSCTTLPLLCELEIDGF  254 (405)
Q Consensus       190 ~~~~~~~~~~~~~L~~L~l~~~~~l~~--------~l~~~~~~L~~L~l~~c~~-------l~~~l~~l~~L~~L~l~~~  254 (405)
                      .+   -+...+|+|+++++.+|. ++.        .+....|+|+.+.+.+|..       +...+...|.|+.|++++|
T Consensus       233 La---kaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  233 LA---KALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             HH---HHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            00   122336778888887773 221        1222577888888777642       2344455788888888887


Q ss_pred             CC
Q 044605          255 GE  256 (405)
Q Consensus       255 ~~  256 (405)
                      ..
T Consensus       309 ~l  310 (382)
T KOG1909|consen  309 RL  310 (382)
T ss_pred             cc
Confidence            43

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.72  E-value=0.00032  Score=71.96  Aligned_cols=54  Identities=24%  Similarity=0.257  Sum_probs=24.7

Q ss_pred             CCCcccEEeeccCccccc---cCCCCCCcccEEEEeccC--CccccCCCCCCcceEEEcC
Q 044605          199 GFPCLRELSIINCSKLKG---RLPQHFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDG  253 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~---~l~~~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~  253 (405)
                      .||+|++|.+.+-.-..+   .+-.+||+|..|++++++  ++ .++.++++|++|.+.+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence            456666666555221111   111245555555555543  22 4444455555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.64  E-value=0.00027  Score=64.44  Aligned_cols=47  Identities=23%  Similarity=0.145  Sum_probs=31.0

Q ss_pred             HHHhccCCCCCCccEEEEEeeCCC-CCCcccC--CCCCCCccEEEEEcCC
Q 044605          113 TRVLEMLKPHYGLKELKVQNYGGT-KFPAWLG--QSSFENLVVLRFRNCN  159 (405)
Q Consensus       113 ~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~--~~~l~~L~~L~l~~~~  159 (405)
                      ....+.+..+++|+++++++|..+ ..+..+.  .+++..|++|++.+|.
T Consensus        82 ~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G  131 (382)
T KOG1909|consen   82 KMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG  131 (382)
T ss_pred             HHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence            334556667779999999987643 2222221  1257888899998887

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.63  E-value=0.00033  Score=71.88  Aligned_cols=100  Identities=25%  Similarity=0.311  Sum_probs=44.3

Q ss_pred             CCccEEEEEcCCCCCcC-C-CCC-CCCCccEEeecCCCCCee-eCCCCCCCCCCCCCCcccEEeeccCccccccCC-CCC
Q 044605          148 ENLVVLRFRNCNQCTSL-P-SVG-HLPLLKNLVIKGMGRMAK-AGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP-QHF  222 (405)
Q Consensus       148 ~~L~~L~l~~~~~~~~l-~-~l~-~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~-~~~  222 (405)
                      ++|++|++++......- | .++ .||+|+.|.+.+..-... +..      .-..||+|..|+++++ .++.... +.+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~------lc~sFpNL~sLDIS~T-nI~nl~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ------LCASFPNLRSLDISGT-NISNLSGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH------HhhccCccceeecCCC-CccCcHHHhcc
Confidence            55666666553321110 0 122 366666666655321111 111      1113666666666664 2221111 245


Q ss_pred             CcccEEEEeccCCc----cccCCCCCCcceEEEcCc
Q 044605          223 SSLERIVIMSCEQL----LVSCTTLPLLCELEIDGF  254 (405)
Q Consensus       223 ~~L~~L~l~~c~~l----~~~l~~l~~L~~L~l~~~  254 (405)
                      ++|+.|.+.+-.-.    ...+..+.+|+.||+++-
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            55555555442100    123344666666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.50  E-value=0.00061  Score=66.40  Aligned_cols=102  Identities=23%  Similarity=0.223  Sum_probs=57.5

Q ss_pred             CCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605          119 LKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK  198 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  198 (405)
                      +..+.+|..+++.++....+...+.  .+++|++|+++++. ++.+.++..++.|+.|++.++. +..+..+.       
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~--~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~-i~~~~~~~-------  159 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLS--SLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNL-ISDISGLE-------  159 (414)
T ss_pred             cccccceeeeeccccchhhcccchh--hhhcchheeccccc-cccccchhhccchhhheeccCc-chhccCCc-------
Confidence            5556666667666666544433232  56777777777766 6777777777777777776642 44443311       


Q ss_pred             CCCcccEEeeccCccccccCC---CCCCcccEEEEec
Q 044605          199 GFPCLRELSIINCSKLKGRLP---QHFSSLERIVIMS  232 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~~l~---~~~~~L~~L~l~~  232 (405)
                      .+++|+.+++.++. ++..-+   ..+.+++.+.+.+
T Consensus       160 ~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  160 SLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGG  195 (414)
T ss_pred             cchhhhcccCCcch-hhhhhhhhhhhccchHHHhccC
Confidence            25666666666542 221222   3445555555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.27  E-value=0.0017  Score=63.08  Aligned_cols=134  Identities=20%  Similarity=0.206  Sum_probs=79.5

Q ss_pred             cccccCchhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhh
Q 044605           14 METINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAED   93 (405)
Q Consensus        14 l~~l~~~~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~   93 (405)
                      ++.+|..+.. + =|++|-+++|+++.+|.+||.+..|..|+.  ..+.....+.+++.|..|+ .+.+..         
T Consensus       133 lS~lp~~lC~-l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~--s~nei~slpsql~~l~slr-~l~vrR---------  198 (722)
T KOG0532|consen  133 LSHLPDGLCD-L-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDV--SKNEIQSLPSQLGYLTSLR-DLNVRR---------  198 (722)
T ss_pred             hhcCChhhhc-C-cceeEEEecCccccCCcccccchhHHHhhh--hhhhhhhchHHhhhHHHHH-HHHHhh---------
Confidence            3444444431 2 356666666666666666666666655542  1111223344555555454 333322         


Q ss_pred             hhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC----CCC
Q 044605           94 AKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS----VGH  169 (405)
Q Consensus        94 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~----l~~  169 (405)
                                      .....+++++. .-.|..|+++.|....+|..+.  .++.|++|.+.+|+ +...|.    -|.
T Consensus       199 ----------------n~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNP-LqSPPAqIC~kGk  258 (722)
T KOG0532|consen  199 ----------------NHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNP-LQSPPAQICEKGK  258 (722)
T ss_pred             ----------------hhhhhCCHHHh-CCceeeeecccCceeecchhhh--hhhhheeeeeccCC-CCCChHHHHhccc
Confidence                            22333445555 3447888888888888998887  89999999999888 666664    334


Q ss_pred             CCCccEEeecCC
Q 044605          170 LPLLKNLVIKGM  181 (405)
Q Consensus       170 l~~L~~L~l~~~  181 (405)
                      ..=-++|++..|
T Consensus       259 VHIFKyL~~qA~  270 (722)
T KOG0532|consen  259 VHIFKYLSTQAC  270 (722)
T ss_pred             eeeeeeecchhc
Confidence            444566666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.98  E-value=0.00041  Score=68.85  Aligned_cols=109  Identities=20%  Similarity=0.248  Sum_probs=54.8

Q ss_pred             CCCccEEEEEcCCCCCc--C-CCCCCCCCccEEeecCC-CCCeeeCCCCCCCCCCCCCCcccEEeeccCcccccc----C
Q 044605          147 FENLVVLRFRNCNQCTS--L-PSVGHLPLLKNLVIKGM-GRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGR----L  218 (405)
Q Consensus       147 l~~L~~L~l~~~~~~~~--l-~~l~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----l  218 (405)
                      +++|+.+.+.+|..+..  + +.....+.|+.|+++++ ......+...  ......+++|+.|+++.|..+++.    +
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL--LLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh--hhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            56666666666665554  2 22445666777776652 2221111100  011234566666666666543321    1


Q ss_pred             CCCCCcccEEEEeccCCc-cc----cCCCCCCcceEEEcCcCCc
Q 044605          219 PQHFSSLERIVIMSCEQL-LV----SCTTLPLLCELEIDGFGEV  257 (405)
Q Consensus       219 ~~~~~~L~~L~l~~c~~l-~~----~l~~l~~L~~L~l~~~~~l  257 (405)
                      ...+++|+.|.+..|..+ ..    ....+++|+.|++++|..+
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            124566777766666543 11    2233666777777766554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.90  E-value=0.0037  Score=55.11  Aligned_cols=107  Identities=22%  Similarity=0.346  Sum_probs=66.9

Q ss_pred             CCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcccccc
Q 044605          221 HFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEG  299 (405)
Q Consensus       221 ~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~  299 (405)
                      .+..|+.+.+.++... ...++.+|+|+.|.+++|....       .                           ..++..
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~-------~---------------------------~~l~vl   86 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRV-------S---------------------------GGLEVL   86 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccc-------c---------------------------ccceeh
Confidence            4455555555555433 3566777888888888763221       0                           112222


Q ss_pred             cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-----CCcCCccEEeecCC
Q 044605          300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-----GLLPSVVYLSIYLC  367 (405)
Q Consensus       300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c  367 (405)
                      ...+|+|+.+++++|+++.+.     .++-+..+.+|..|++.+|+... +-..     .++++|++|+-.++
T Consensus        87 ~e~~P~l~~l~ls~Nki~~ls-----tl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen   87 AEKAPNLKVLNLSGNKIKDLS-----TLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhCCceeEEeecCCcccccc-----ccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence            345689999999998888642     22225677888899999887544 3222     34568888877766

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.90  E-value=0.052  Score=46.23  Aligned_cols=103  Identities=20%  Similarity=0.326  Sum_probs=66.0

Q ss_pred             CCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCc--cccccCC-CCC
Q 044605          146 SFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCS--KLKGRLP-QHF  222 (405)
Q Consensus       146 ~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~l~-~~~  222 (405)
                      ...+...++++++. +..++.+..++.|.+|.++++ .+..+..     .....+|+|+.|.+.+.+  .+.+.-| ..+
T Consensus        40 ~~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nN-rIt~I~p-----~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~  112 (233)
T KOG1644|consen   40 TLDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNN-RITRIDP-----DLDTFLPNLKTLILTNNSIQELGDLDPLASC  112 (233)
T ss_pred             cccccceecccccc-hhhcccCCCccccceEEecCC-cceeecc-----chhhhccccceEEecCcchhhhhhcchhccC
Confidence            34566777887765 666667778888888888764 4555543     122357888888887742  2222223 267


Q ss_pred             CcccEEEEeccCCc------cccCCCCCCcceEEEcCcC
Q 044605          223 SSLERIVIMSCEQL------LVSCTTLPLLCELEIDGFG  255 (405)
Q Consensus       223 ~~L~~L~l~~c~~l------~~~l~~l~~L~~L~l~~~~  255 (405)
                      |.|+.|.+-+.+.-      .-.+..+|+|++||.++..
T Consensus       113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            88888888775522      1234457888888887743

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.80  E-value=0.0042  Score=60.53  Aligned_cols=32  Identities=13%  Similarity=-0.003  Sum_probs=22.5

Q ss_pred             eeeEEEEEccCCCCccCccccCCCccCcccCc
Q 044605           25 FVIYLILVGDLTESKEMPLRIGKLTSLRTLTK   56 (405)
Q Consensus        25 ~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~   56 (405)
                      ++.+.+|++.+|.|+.+...+.++.+|++|++
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~l  125 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDL  125 (414)
T ss_pred             ccceeeeeccccchhhcccchhhhhcchheec
Confidence            56777777777777777555677777777763

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.58  E-value=0.011  Score=28.93  Aligned_cols=16  Identities=13%  Similarity=-0.037  Sum_probs=11.0

Q ss_pred             eEEEEEccCCCCccCc
Q 044605           27 IYLILVGDLTESKEMP   42 (405)
Q Consensus        27 ~L~~L~L~~~~i~~lP   42 (405)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            6899999999999887

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.52  E-value=0.0032  Score=62.41  Aligned_cols=127  Identities=26%  Similarity=0.308  Sum_probs=79.1

Q ss_pred             CCCccEEEEEeeCCCCC---CcccCCCCCCCccEEEEEcC-CCCCcCC-----CCCCCCCccEEeecCCCCCeeeCCCCC
Q 044605          122 HYGLKELKVQNYGGTKF---PAWLGQSSFENLVVLRFRNC-NQCTSLP-----SVGHLPLLKNLVIKGMGRMAKAGTTGG  192 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~l---p~~~~~~~l~~L~~L~l~~~-~~~~~l~-----~l~~l~~L~~L~l~~~~~l~~~~~~~~  192 (405)
                      ++.|+.+.+.++.....   -...  ..+++|+.|++++| ......+     -...+++|+.|++..+..+.+...   
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l---  261 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALA--LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL---  261 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHH--hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH---
Confidence            67778887777654321   1122  25789999999873 3333222     133468889999988765444432   


Q ss_pred             CCCCCCCCCcccEEeeccCccccc----cCCCCCCcccEEEEeccCCc-----cccCCCCCCcceEEEcCc
Q 044605          193 DQQAAKGFPCLRELSIINCSKLKG----RLPQHFSSLERIVIMSCEQL-----LVSCTTLPLLCELEIDGF  254 (405)
Q Consensus       193 ~~~~~~~~~~L~~L~l~~~~~l~~----~l~~~~~~L~~L~l~~c~~l-----~~~l~~l~~L~~L~l~~~  254 (405)
                       ...+..+++|++|.+.+|..+++    .+...+++|++|++++|..+     ......+++|+.|.+..+
T Consensus       262 -~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  262 -SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             -HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence             01122388999999888876553    22237899999999999765     222334666666555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.06  E-value=0.095  Score=44.69  Aligned_cols=62  Identities=24%  Similarity=0.226  Sum_probs=32.0

Q ss_pred             cCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCC--CCCcCCCCCCCCCccEEeecC
Q 044605          118 MLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCN--QCTSLPSVGHLPLLKNLVIKG  180 (405)
Q Consensus       118 ~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~--~~~~l~~l~~l~~L~~L~l~~  180 (405)
                      .++.++.|..|.+.+|....+...+. .-+++|..|.+.+|+  .+.++.++..+|.|++|.+-+
T Consensus        59 ~lp~l~rL~tLll~nNrIt~I~p~L~-~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   59 NLPHLPRLHTLLLNNNRITRIDPDLD-TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             cCCCccccceEEecCCcceeeccchh-hhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            35555666666666655555433332 124556666666554  222333455555666655544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.87  E-value=0.0016  Score=65.11  Aligned_cols=105  Identities=20%  Similarity=0.148  Sum_probs=62.7

Q ss_pred             cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeC
Q 044605          237 LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVG  313 (405)
Q Consensus       237 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~  313 (405)
                      ...+.-+|.|+.|+++.|+..+       .+.+..+..|  |+++++          .++.+|. ...+++ |+.|.+++
T Consensus       180 D~SLqll~ale~LnLshNk~~~-------v~~Lr~l~~LkhLDlsyN----------~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTK-------VDNLRRLPKLKHLDLSYN----------CLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhh-------hHHHHhcccccccccccc----------hhccccccchhhhh-heeeeecc
Confidence            3444445666666666665442       1123333333  444443          3344553 333555 88888888


Q ss_pred             CcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC---CCcCCccEEeecCCc
Q 044605          314 SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN---GLLPSVVYLSIYLCP  368 (405)
Q Consensus       314 ~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~  368 (405)
                      |.++.+-.        +.++.+|+.||+++| .+....+.   +.+..|+.|++.|.|
T Consensus       242 N~l~tL~g--------ie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  242 NALTTLRG--------IENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             cHHHhhhh--------HHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            88876532        467888899999884 45555443   334578888888876

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.58  E-value=0.0036  Score=62.71  Aligned_cols=69  Identities=17%  Similarity=0.205  Sum_probs=53.6

Q ss_pred             cCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecC
Q 044605          289 GSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYL  366 (405)
Q Consensus       289 ~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~  366 (405)
                      +||.+..+..++.-++.|+.|+++.|+++.+. .       +..|+.|++||+++| .+..+|.-  ..+ .|+.|.+++
T Consensus       172 syN~L~~mD~SLqll~ale~LnLshNk~~~v~-~-------Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrn  241 (1096)
T KOG1859|consen  172 SYNRLVLMDESLQLLPALESLNLSHNKFTKVD-N-------LRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRN  241 (1096)
T ss_pred             chhhHHhHHHHHHHHHHhhhhccchhhhhhhH-H-------HHhcccccccccccc-hhccccccchhhh-hheeeeecc
Confidence            67777888888888899999999998888764 2       577888999999984 67777765  233 588888887


Q ss_pred             C
Q 044605          367 C  367 (405)
Q Consensus       367 c  367 (405)
                      .
T Consensus       242 N  242 (1096)
T KOG1859|consen  242 N  242 (1096)
T ss_pred             c
Confidence            6

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.45  E-value=0.098  Score=47.32  Aligned_cols=16  Identities=19%  Similarity=0.223  Sum_probs=7.9

Q ss_pred             cCCCCCCccEEEEEee
Q 044605          118 MLKPHYGLKELKVQNY  133 (405)
Q Consensus       118 ~l~~~~~L~~L~l~~~  133 (405)
                      .+..++.|+.|+++.|
T Consensus        92 ile~lP~l~~LNls~N  107 (418)
T KOG2982|consen   92 ILEQLPALTTLNLSCN  107 (418)
T ss_pred             HHhcCccceEeeccCC
Confidence            3444555555555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.86  E-value=0.039  Score=48.76  Aligned_cols=104  Identities=25%  Similarity=0.306  Sum_probs=61.5

Q ss_pred             CCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccc--cCCC--C
Q 044605          146 SFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKG--RLPQ--H  221 (405)
Q Consensus       146 ~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~l~~--~  221 (405)
                      .+..|+.+.+.++. ++.+..+-.+|+|+.|.++.+..-....-    ...+..+|+|+++++++. +++.  .++.  .
T Consensus        41 ~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l----~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~  114 (260)
T KOG2739|consen   41 EFVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGL----EVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKE  114 (260)
T ss_pred             cccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccc----eehhhhCCceeEEeecCC-ccccccccchhhh
Confidence            46667777776665 55555566778888888876521111111    112334688999988874 3331  1211  5


Q ss_pred             CCcccEEEEeccCCc------cccCCCCCCcceEEEcCcC
Q 044605          222 FSSLERIVIMSCEQL------LVSCTTLPLLCELEIDGFG  255 (405)
Q Consensus       222 ~~~L~~L~l~~c~~l------~~~l~~l~~L~~L~l~~~~  255 (405)
                      +.+|..|++.+|+..      ...|..+|+|+.|+-.+..
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            677777888777643      2334447777777766554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.28  E-value=0.11  Score=27.19  Aligned_cols=18  Identities=22%  Similarity=0.530  Sum_probs=12.6

Q ss_pred             CccEEEEeCCcccccccC
Q 044605          305 HITRISIVGSYLVSFPKG  322 (405)
Q Consensus       305 ~L~~L~l~~~~l~~l~~~  322 (405)
                      +|+.|++++|+++.||.+
T Consensus         1 ~L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             TESEEEETSSEESEEGTT
T ss_pred             CccEEECCCCcCEeCChh
Confidence            467777777777777765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.52  E-value=0.79  Score=36.13  Aligned_cols=48  Identities=13%  Similarity=0.167  Sum_probs=18.6

Q ss_pred             CCcccEEEEec-cCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC
Q 044605          222 FSSLERIVIMS-CEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG  275 (405)
Q Consensus       222 ~~~L~~L~l~~-c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L  275 (405)
                      +.+|+.+.+.. ...+ ...|..+++|+.+.+.+.  +.    .+....|.++..+
T Consensus        11 ~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~--~~----~i~~~~F~~~~~l   60 (129)
T PF13306_consen   11 CSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN--LT----SIGDNAFSNCKSL   60 (129)
T ss_dssp             -TT--EEEETST--EE-TTTTTT-TT-SEEEESST--TS----CE-TTTTTT-TT-
T ss_pred             CCCCCEEEECCCeeEeChhhccccccccccccccc--cc----ccceeeeeccccc
Confidence            34555555542 1222 234555666676666553  33    4444445544444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.28  E-value=0.096  Score=28.68  Aligned_cols=20  Identities=10%  Similarity=-0.140  Sum_probs=17.9

Q ss_pred             eeEEEEEccCCCCccCcccc
Q 044605           26 VIYLILVGDLTESKEMPLRI   45 (405)
Q Consensus        26 ~~L~~L~L~~~~i~~lP~~i   45 (405)
                      ++|++|+|++|.++.+|.++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            57899999999999999874

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.28  E-value=0.096  Score=28.68  Aligned_cols=20  Identities=10%  Similarity=-0.140  Sum_probs=17.9

Q ss_pred             eeEEEEEccCCCCccCcccc
Q 044605           26 VIYLILVGDLTESKEMPLRI   45 (405)
Q Consensus        26 ~~L~~L~L~~~~i~~lP~~i   45 (405)
                      ++|++|+|++|.++.+|.++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            57899999999999999874

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.94  E-value=0.24  Score=44.88  Aligned_cols=126  Identities=17%  Similarity=0.190  Sum_probs=64.7

Q ss_pred             CCCccEEEEEeeCCCCCCccc--C--CCCCCCccEEEEEcCCCCCcCCCC-CCCCCccEEeecCCCCCeeeCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFPAWL--G--QSSFENLVVLRFRNCNQCTSLPSV-GHLPLLKNLVIKGMGRMAKAGTTGGDQQA  196 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp~~~--~--~~~l~~L~~L~l~~~~~~~~l~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  196 (405)
                      +.+++.+++.+|..   .+|-  +  ...++.|+.|+++.|+...++..+ ..+.+|++|.+.+..--..-.     ...
T Consensus        70 ~~~v~elDL~~N~i---SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~-----~s~  141 (418)
T KOG2982|consen   70 VTDVKELDLTGNLI---SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS-----TSS  141 (418)
T ss_pred             hhhhhhhhcccchh---ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh-----hhh
Confidence            34566677766653   2342  1  126788999999887744444433 356788888887643211111     112


Q ss_pred             CCCCCcccEEeeccCccccc------cCCCCCCcccEEEEeccCCc-----cccCCCCCCcceEEEcCcCC
Q 044605          197 AKGFPCLRELSIINCSKLKG------RLPQHFSSLERIVIMSCEQL-----LVSCTTLPLLCELEIDGFGE  256 (405)
Q Consensus       197 ~~~~~~L~~L~l~~~~~l~~------~l~~~~~~L~~L~l~~c~~l-----~~~l~~l~~L~~L~l~~~~~  256 (405)
                      ...+|.+++|+++..+ +..      ...+.-+.+..|....|...     -..-..+|++..+.+-.|+.
T Consensus       142 l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~Pl  211 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPL  211 (418)
T ss_pred             hhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcc
Confidence            3346777777776531 111      11112334555555555421     01111256666666666643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.78  E-value=0.13  Score=28.21  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=15.7

Q ss_pred             CCCccEEEEeCCcccccccCCC
Q 044605          303 LSHITRISIVGSYLVSFPKGGL  324 (405)
Q Consensus       303 l~~L~~L~l~~~~l~~l~~~~~  324 (405)
                      +++|+.|++++|+++.+|...|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4567788888888887776544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.78  E-value=0.13  Score=28.21  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=15.7

Q ss_pred             CCCccEEEEeCCcccccccCCC
Q 044605          303 LSHITRISIVGSYLVSFPKGGL  324 (405)
Q Consensus       303 l~~L~~L~l~~~~l~~l~~~~~  324 (405)
                      +++|+.|++++|+++.+|...|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4567788888888887776544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.91  E-value=1.6  Score=34.38  Aligned_cols=51  Identities=14%  Similarity=0.189  Sum_probs=19.3

Q ss_pred             CCcccEEeeccCccccccCCC----CCCcccEEEEecc-CCc-cccCCCCCCcceEEEcC
Q 044605          200 FPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSC-EQL-LVSCTTLPLLCELEIDG  253 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c-~~l-~~~l~~l~~L~~L~l~~  253 (405)
                      +.+|+.+.+.+  .++ .++.    .+++|+.+.+... ..+ ...|..+++++.+.+.+
T Consensus        11 ~~~l~~i~~~~--~~~-~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen   11 CSNLESITFPN--TIK-KIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             -TT--EEEETS--T---EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS
T ss_pred             CCCCCEEEECC--Cee-EeChhhcccccccccccccccccccceeeeecccccccccccc
Confidence            44566666543  222 1221    3445666666531 122 23344555666666643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.86  E-value=0.0092  Score=53.19  Aligned_cols=101  Identities=21%  Similarity=0.346  Sum_probs=58.6

Q ss_pred             CCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCccccccc
Q 044605          222 FSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGL  300 (405)
Q Consensus       222 ~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~  300 (405)
                      +.+.++|+.++|.-- ...+..+|.|++|.++-|+...                                     + ..+
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss-------------------------------------L-~pl   59 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS-------------------------------------L-APL   59 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeecccccc-------------------------------------c-hhH
Confidence            344556666666522 2444567777777776553321                                     1 124


Q ss_pred             CCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC------CCcCCccEEeec
Q 044605          301 HKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN------GLLPSVVYLSIY  365 (405)
Q Consensus       301 ~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~------~~~~~L~~L~i~  365 (405)
                      ..+++|++|++..|.+.++.+     +..+.++|+|+.|-+..||--..-+..      ..+|+|+.||=.
T Consensus        60 ~rCtrLkElYLRkN~I~sldE-----L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv  125 (388)
T KOG2123|consen   60 QRCTRLKELYLRKNCIESLDE-----LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV  125 (388)
T ss_pred             HHHHHHHHHHHHhcccccHHH-----HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence            466777777777777766633     333677788888877777754443322      234567766543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.09  E-value=0.053  Score=46.16  Aligned_cols=66  Identities=27%  Similarity=0.369  Sum_probs=41.5

Q ss_pred             CCCCccEEEEeC-CcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCcchHH
Q 044605          302 KLSHITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCPDLEE  372 (405)
Q Consensus       302 ~l~~L~~L~l~~-~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~~  372 (405)
                      ++++++.|.+.+ ..+.+..   ++.+.  +-.++|++|++++|+.+++-.-.  ..+++|+.|.+.+.|.+..
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~---L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWC---LERLG--GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             ccchhhhheeccccchhhHH---HHHhc--ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence            555556665554 3333322   22222  24588999999999988776443  3456889999998876643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.27  E-value=0.088  Score=44.87  Aligned_cols=79  Identities=13%  Similarity=0.227  Sum_probs=43.9

Q ss_pred             CccEEEEEcCCCCC--cCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC---CCCC
Q 044605          149 NLVVLRFRNCNQCT--SLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP---QHFS  223 (405)
Q Consensus       149 ~L~~L~l~~~~~~~--~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~---~~~~  223 (405)
                      .++.++.+++. +.  .+..+..++.++.|.+.+|..+...+-    ....+.+|+|+.|++++|+.+++.--   ..++
T Consensus       102 ~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L----~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk  176 (221)
T KOG3864|consen  102 KIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCL----ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK  176 (221)
T ss_pred             eEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHH----HHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence            35555655543 22  122356677777777777776666544    01122567777777777777664111   1455


Q ss_pred             cccEEEEec
Q 044605          224 SLERIVIMS  232 (405)
Q Consensus       224 ~L~~L~l~~  232 (405)
                      +|+.|.+.+
T Consensus       177 nLr~L~l~~  185 (221)
T KOG3864|consen  177 NLRRLHLYD  185 (221)
T ss_pred             hhHHHHhcC
Confidence            555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=86.21  E-value=0.12  Score=41.29  Aligned_cols=37  Identities=19%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          302 KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       302 ~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      .++.++.|++++|.+.++|++       +..++.|+.|++..|+
T Consensus        75 kf~t~t~lNl~~neisdvPeE-------~Aam~aLr~lNl~~N~  111 (177)
T KOG4579|consen   75 KFPTATTLNLANNEISDVPEE-------LAAMPALRSLNLRFNP  111 (177)
T ss_pred             ccchhhhhhcchhhhhhchHH-------HhhhHHhhhcccccCc
Confidence            444555555555555555555       3555555555555544

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.04  E-value=0.54  Score=25.68  Aligned_cols=15  Identities=13%  Similarity=0.406  Sum_probs=8.3

Q ss_pred             CccEEeecCCcchHH
Q 044605          358 SVVYLSIYLCPDLEE  372 (405)
Q Consensus       358 ~L~~L~i~~c~~l~~  372 (405)
                      +|++|++++|+.+++
T Consensus         3 ~L~~L~l~~C~~itD   17 (26)
T smart00367        3 NLRELDLSGCTNITD   17 (26)
T ss_pred             CCCEeCCCCCCCcCH
Confidence            555555555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.29  E-value=0.18  Score=45.22  Aligned_cols=61  Identities=15%  Similarity=0.095  Sum_probs=39.8

Q ss_pred             hhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEc
Q 044605           21 FTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTIL   83 (405)
Q Consensus        21 ~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~   83 (405)
                      +-..++.|++|.||-|.|+.+ ..+..+++|+.|.+....-.+...+.-|.+|..|+ .|.+.
T Consensus        36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr-~LWL~   96 (388)
T KOG2123|consen   36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR-TLWLD   96 (388)
T ss_pred             HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh-hHhhc
Confidence            334579999999999999988 45889999999975333222223333344455455 44443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=83.69  E-value=0.061  Score=43.00  Aligned_cols=52  Identities=15%  Similarity=0.227  Sum_probs=35.6

Q ss_pred             CCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605          292 DQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP  351 (405)
Q Consensus       292 ~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~  351 (405)
                      +++.+|..+..++.|+.|++++|.+...|+-       +..+.+|..|+..++ ....++
T Consensus        88 eisdvPeE~Aam~aLr~lNl~~N~l~~~p~v-------i~~L~~l~~Lds~~n-a~~eid  139 (177)
T KOG4579|consen   88 EISDVPEELAAMPALRSLNLRFNPLNAEPRV-------IAPLIKLDMLDSPEN-ARAEID  139 (177)
T ss_pred             hhhhchHHHhhhHHhhhcccccCccccchHH-------HHHHHhHHHhcCCCC-ccccCc
Confidence            5567888888999999999999888776654       233556666666553 334444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=82.33  E-value=1.4  Score=39.68  Aligned_cols=49  Identities=29%  Similarity=0.409  Sum_probs=36.3

Q ss_pred             HHHHHhccCCCCCCccEEEEEeeC-CCCCCcccCC--CCCCCccEEEEEcCC
Q 044605          111 IQTRVLEMLKPHYGLKELKVQNYG-GTKFPAWLGQ--SSFENLVVLRFRNCN  159 (405)
Q Consensus       111 ~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~--~~l~~L~~L~l~~~~  159 (405)
                      .....++.+..|++|++.++++|. +..+|..+..  ++-+.|++|++.+|.
T Consensus        80 ~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238          80 NLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             HHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence            445567778889999999999876 4556654331  356889999998887

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=80.60  E-value=1  Score=24.67  Aligned_cols=18  Identities=11%  Similarity=-0.079  Sum_probs=16.1

Q ss_pred             eeEEEEEccCCCCccCcc
Q 044605           26 VIYLILVGDLTESKEMPL   43 (405)
Q Consensus        26 ~~L~~L~L~~~~i~~lP~   43 (405)
                      ++|++|+.++|+++.+|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            478999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 5e-10
 Identities = 77/442 (17%), Positives = 141/442 (31%), Gaps = 108/442 (24%)

Query: 1   MEVYRAQ--------LARLRRMETINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSL- 51
             V R Q        L  LR  +             +++ G       +    GK T + 
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAK------------NVLIDG-------VL-GSGK-TWVA 167

Query: 52  -RTLTKFAVGKSNCSG-----LSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDS 105
                 + V            L    S   + E L  L      +  +    +  +S+  
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIK 224

Query: 106 REVAEIQTRVLEMLKPHYGLKEL----KVQNYGGTKFPAWLGQSSFEN----LVVLRFRN 157
             +  IQ  +  +LK       L     VQN       A    + F      L+  RF+ 
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQN-------AKAWNA-FNLSCKILLTTRFKQ 276

Query: 158 CNQCTSLPSVGHLPLLKNLVI----KGMGRMAK-AGTTGGD--QQAAKGFPCLRELSIIN 210
                S  +  H+ L  + +     +    + K       D  ++     P    LSII 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSII- 333

Query: 211 CSKLKGRLPQHFSSLERIVIMSCEQLL-VSCTTLPLLCELEI-DGFGEVAWINRPVEAGI 268
                  +    ++ +    ++C++L  +  ++L +L   E    F  ++         +
Sbjct: 334 ----AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---------V 380

Query: 269 FDSSNPGPEKSRTEVLP--W-EIGSPDQESLPEGLHKLSHITR------ISIVGSYLVSF 319
           F  S   P      +L   W ++   D   +   LHK S + +      ISI   YL   
Sbjct: 381 FPPSAHIPTI----LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 320 PKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVV--YLSIYLCPDLEEKCKKD 377
            K        + N  +L R  +    I K+F  + L+P  +  Y   ++   L +  +  
Sbjct: 437 VK--------LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL-KNIEHP 487

Query: 378 ER--EYCHLVADIPFVQ--LNH 395
           ER   +  +  D  F++  + H
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRH 509

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 55/364 (15%), Positives = 97/364 (26%), Gaps = 101/364 (27%)

Query: 45  IGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSD 104
               +    L          + L          ++         + A      N      
Sbjct: 8   HHHSSGRENLYF-----QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET 62

Query: 105 SREVA-EIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTS 163
               A +    +LE      G   L++++    +FP    +    +L  +   +      
Sbjct: 63  RTGRALKATADLLEDAT-QPGRVALELRSVPLPQFPDQAFR--LSHLQHMTI-DAAGLME 118

Query: 164 LP-SVGHLPLLKNLVIKG---------MGRMAKAGTTGGDQQAAKGFPCLRELSIINCSK 213
           LP ++     L+ L +           +  + +                LRELSI  C +
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALPASIASLNR----------------LRELSIRACPE 162

Query: 214 LKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSN 273
           L   LP     L         Q LV+  +L L                            
Sbjct: 163 LT-ELP---EPLASTDASGEHQGLVNLQSLRLEW-------------------------- 192

Query: 274 PGPEKSRTEVLPWEIGSPDQ-----------ESLPEGLHKLSHITRISIVG-SYLVSFPK 321
                +    LP  I +               +L   +H L  +  + + G + L ++P 
Sbjct: 193 -----TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 322 --GGLESLSF---------------VRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLS 363
             GG   L                 +  LT LE+L+L  C  L   P     LP+   + 
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 364 IYLC 367
           +   
Sbjct: 308 VPPH 311

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.82
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.79
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.77
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.75
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.72
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.72
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.68
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.67
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.67
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.66
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.66
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.65
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.64
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.63
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.61
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.6
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.6
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.59
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.56
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.56
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.55
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.54
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.54
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.51
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.51
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.5
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.5
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.49
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.47
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.46
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.44
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.42
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.42
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.41
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.4
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.39
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.39
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.35
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.34
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.31
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.31
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.31
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.3
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.24
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.22
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.2
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.18
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.02
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.01
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.01
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.0
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.99
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.96
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.95
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.93
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.92
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.9
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.88
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.86
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.81
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.78
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.78
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.73
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.41
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.27
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.25
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.13
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.96
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.88
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.71
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.71
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.5
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.43
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.8
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.43
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.61
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	86.65

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=4e-24  Score=222.56  Aligned_cols=347  Identities=15%  Similarity=0.138  Sum_probs=166.8

Q ss_pred             hhheeeEEEEEccCCCCc-cCccc-cCCCccCcccCceeeCCCCCCCcccccccc-cCCCceEEcccccCCChh-hhh--
Q 044605           22 TEIFVIYLILVGDLTESK-EMPLR-IGKLTSLRTLTKFAVGKSNCSGLSELRSST-LLHEKLTILGLENVNVAE-DAK--   95 (405)
Q Consensus        22 ~~~~~~L~~L~L~~~~i~-~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~-~L~~~L~l~~l~~~~~~~-~~~--   95 (405)
                      +..+++|++|++++|.++ .+|.. ++++++|++|++....- .+..+..+..+. .|+ .|.+....-..... ...  
T Consensus       314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l-~~~~p~~l~~l~~~L~-~L~Ls~N~l~~~~~~~~~~~  391 (768)
T 3rgz_A          314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-SGELPESLTNLSASLL-TLDLSSNNFSGPILPNLCQN  391 (768)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE-EECCCTTHHHHTTTCS-EEECCSSEEEEECCTTTTCS
T ss_pred             HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc-CccccHHHHhhhcCCc-EEEccCCCcCCCcChhhhhc
Confidence            345778899999999887 78876 88889998887432211 112333344443 454 55554321000000 000  


Q ss_pred             -hcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCC-CCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCC
Q 044605           96 -EGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGG-TKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPL  172 (405)
Q Consensus        96 -~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~  172 (405)
                       ...+..+.-..+  .........+..+++|+.|++.+|.. ...|..+.  .+++|+.|++++|.....+|. ++.+++
T Consensus       392 ~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~  467 (768)
T 3rgz_A          392 PKNTLQELYLQNN--GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--SLSKLRDLKLWLNMLEGEIPQELMYVKT  467 (768)
T ss_dssp             TTCCCCEEECCSS--EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             ccCCccEEECCCC--ccccccCHHHhcCCCCCEEECcCCcccCcccHHHh--cCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence             011111111000  00011222344455666666655442 24455444  455666666665553333442 455566


Q ss_pred             ccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC---CccccCCCCCCc
Q 044605          173 LKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE---QLLVSCTTLPLL  246 (405)
Q Consensus       173 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~---~l~~~l~~l~~L  246 (405)
                      |++|++.++.-...++.      ....+++|++|+++++ .+.+.+|.   .+++|+.|++++|.   .+|..+..+++|
T Consensus       468 L~~L~L~~N~l~~~~p~------~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  540 (768)
T 3rgz_A          468 LETLILDFNDLTGEIPS------GLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL  540 (768)
T ss_dssp             CCEEECCSSCCCSCCCG------GGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred             ceEEEecCCcccCcCCH------HHhcCCCCCEEEccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence            66666655543323332      1112555555555554 23323332   34555555555543   124444455555


Q ss_pred             ceEEEcCcCCccccccccccC-----------------------------------------------------------
Q 044605          247 CELEIDGFGEVAWINRPVEAG-----------------------------------------------------------  267 (405)
Q Consensus       247 ~~L~l~~~~~l~~~~~~~~~~-----------------------------------------------------------  267 (405)
                      +.|++++|+..+    .+|..                                                           
T Consensus       541 ~~L~Ls~N~l~g----~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  616 (768)
T 3rgz_A          541 IWLDLNTNLFNG----TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT  616 (768)
T ss_dssp             CEEECCSSEEES----BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred             CEEECCCCccCC----cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence            555555544322    11110                                                           


Q ss_pred             ----------CCCCCCCC--eeecCCCCcc--------------EEecCCCCc-ccccccCCCCCccEEEEeCCccc-cc
Q 044605          268 ----------IFDSSNPG--PEKSRTEVLP--------------WEIGSPDQE-SLPEGLHKLSHITRISIVGSYLV-SF  319 (405)
Q Consensus       268 ----------~~~~l~~L--l~l~~~~~l~--------------l~i~~~~l~-~lp~~~~~l~~L~~L~l~~~~l~-~l  319 (405)
                                .+..++.|  ++++++....              +.++.+.++ .+|..++++++|+.|++++|+++ .+
T Consensus       617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i  696 (768)
T 3rgz_A          617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI  696 (768)
T ss_dssp             SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred             cceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence                      11222333  4444442210              222233444 66777777777777777777766 45


Q ss_pred             ccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCcchH----HHhhcCcccccccccccCeeE
Q 044605          320 PKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLE----EKCKKDEREYCHLVADIPFVQ  392 (405)
Q Consensus       320 ~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~----~~~~~~~~~~~~~i~~i~~~~  392 (405)
                      |..       +.++++|++|++++|+..+.+|....+.++....+.|+|.+=    ..|..+.+++|++|+|+++..
T Consensus       697 p~~-------l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~  766 (768)
T 3rgz_A          697 PQA-------MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH  766 (768)
T ss_dssp             CGG-------GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred             ChH-------HhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence            554       567777888888877766777766555566666666765431    168888999999999998753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=7.8e-22  Score=200.06  Aligned_cols=251  Identities=15%  Similarity=0.116  Sum_probs=155.0

Q ss_pred             CCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605          119 LKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK  198 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  198 (405)
                      +..+++|+.|++.++....+| ++.  .+++|+.|++++|. ++.+|.+ .+++|++|++.++.....+ .       ..
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~-~l~--~~~~L~~L~l~~n~-l~~lp~~-~l~~L~~L~l~~n~~~~~~-~-------~~  347 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLE-DVP--KHFKWQSLSIIRCQ-LKQFPTL-DLPFLKSLTLTMNKGSISF-K-------KV  347 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCC-CCC--TTCCCSEEEEESCC-CSSCCCC-CCSSCCEEEEESCSSCEEC-C-------CC
T ss_pred             cccCCCCCEEEecCccchhhh-hcc--ccccCCEEEccccc-CcccccC-CCCccceeeccCCcCccch-h-------hc
Confidence            344567777888777777777 454  67889999998888 4788877 8889999998887655544 2       23


Q ss_pred             CCCcccEEeeccCcccccc--CCC---CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605          199 GFPCLRELSIINCSKLKGR--LPQ---HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS  271 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~~--l~~---~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  271 (405)
                      .+++|++|+++++ .+++.  .+.   .+++|+.|++++|.  .++..+..+++|+.|++++|....    ..+...+..
T Consensus       348 ~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~  422 (606)
T 3vq2_A          348 ALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR----VTEFSAFLS  422 (606)
T ss_dssp             CCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES----TTTTTTTTT
T ss_pred             cCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC----ccChhhhhc
Confidence            4788888888875 33322  122   57778888887764  335566677777777777776553    333345666


Q ss_pred             CCCC--eeecCCCCcc--------------EEecCCCCcc--cccccCCCCCccEEEEeCCcccccccCCCCCcccCCCC
Q 044605          272 SNPG--PEKSRTEVLP--------------WEIGSPDQES--LPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNL  333 (405)
Q Consensus       272 l~~L--l~l~~~~~l~--------------l~i~~~~l~~--lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l  333 (405)
                      +++|  +++++|....              +.++.+.++.  +|..+..+++|+.|++++|.++.++...      +.++
T Consensus       423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------~~~l  496 (606)
T 3vq2_A          423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV------FDTL  496 (606)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT------TTTC
T ss_pred             cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh------hccc
Confidence            6666  6666664321              2222223332  4555666666666666666666554433      3566


Q ss_pred             CCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCccccccccc-ccCeeEecceEee
Q 044605          334 TSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVA-DIPFVQLNHKLVF  399 (405)
Q Consensus       334 ~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~-~i~~~~~~~~~~~  399 (405)
                      ++|++|++++|...+..|.. ..+++|++|++++|. ++. .    ...+.... .++.+.+.++.+.
T Consensus       497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~-~----p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IET-S----KGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCC-E----ESCGGGSCTTCCEEECCSCCCC
T ss_pred             ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-Ccc-c----CHhHhhhcccCcEEEccCCCcc
Confidence            77777777776543333443 445577777777763 221 1    11133343 4777777776654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.88  E-value=1.5e-22  Score=206.34  Aligned_cols=335  Identities=14%  Similarity=0.112  Sum_probs=188.8

Q ss_pred             CcccccCchhhheeeEEEEEccCCCCcc------------------CccccC--CCccCcccCceeeCCCCCCCcccccc
Q 044605           13 RMETINGDFTEIFVIYLILVGDLTESKE------------------MPLRIG--KLTSLRTLTKFAVGKSNCSGLSELRS   72 (405)
Q Consensus        13 ~l~~l~~~~~~~~~~L~~L~L~~~~i~~------------------lP~~i~--~L~~L~~L~~~~~~~~~~~~~~~L~~   72 (405)
                      .+..+|..+. .+++|++|+|++|.++.                  +|.+++  ++++|++|++..... .+..+..+++
T Consensus       194 ~l~~ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~  271 (636)
T 4eco_A          194 NITFVSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKA  271 (636)
T ss_dssp             EEEEECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTTTT
T ss_pred             CCccCCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHHhc
Confidence            4445776544 57899999999999998                  999999  999999998644332 2344567788


Q ss_pred             cccCCCceEEcccccCCC-hhhhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCc--ccCCCCCCC
Q 044605           73 STLLHEKLTILGLENVNV-AEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPA--WLGQSSFEN  149 (405)
Q Consensus        73 L~~L~~~L~l~~l~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~--~~~~~~l~~  149 (405)
                      +.+|+ .|.+.....+.. ........                 +..+..+++|+.|++.++....+|.  ++.  .+++
T Consensus       272 l~~L~-~L~Ls~n~~l~~~~lp~~~~~-----------------L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~  331 (636)
T 4eco_A          272 LPEMQ-LINVACNRGISGEQLKDDWQA-----------------LADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKK  331 (636)
T ss_dssp             CSSCC-EEECTTCTTSCHHHHHHHHHH-----------------HHHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTT
T ss_pred             CCCCC-EEECcCCCCCccccchHHHHh-----------------hhccccCCCCCEEECCCCcCCccCchhhhc--cCCC
Confidence            88888 887765331211 00000000                 1112234566667766666556666  555  5666


Q ss_pred             ccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc-ccEEeeccCccccccCCC-----CCC
Q 044605          150 LVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC-LRELSIINCSKLKGRLPQ-----HFS  223 (405)
Q Consensus       150 L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~l~~-----~~~  223 (405)
                      |+.|++++|.....+|.++.+++|++|++.++. +..++.      ....+++ |++|+++++ .++ .+|.     .++
T Consensus       332 L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~------~l~~l~~~L~~L~Ls~N-~l~-~lp~~~~~~~l~  402 (636)
T 4eco_A          332 LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPA------NFCGFTEQVENLSFAHN-KLK-YIPNIFDAKSVS  402 (636)
T ss_dssp             CCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCT------TSEEECTTCCEEECCSS-CCS-SCCSCCCTTCSS
T ss_pred             CCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccH------hhhhhcccCcEEEccCC-cCc-ccchhhhhcccC
Confidence            777777666522256655566666666666543 334433      1112444 555555553 233 2332     122


Q ss_pred             cccEEEEeccCC---ccccCC-------CCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCC--------
Q 044605          224 SLERIVIMSCEQ---LLVSCT-------TLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEV--------  283 (405)
Q Consensus       224 ~L~~L~l~~c~~---l~~~l~-------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~--------  283 (405)
                      +|+.|++++|.-   .|..++       .+++|++|++++|...     .++...+..++.|  ++++++..        
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-----~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~  477 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-----KFPKELFSTGSPLSSINLMGNMLTEIPKNSL  477 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-----SCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-----cCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence            455555554431   123333       3445555555554332     2233222233333  33333211        


Q ss_pred             ------------cc-EEecCCCCcccccccC--CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeec-----
Q 044605          284 ------------LP-WEIGSPDQESLPEGLH--KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSR-----  343 (405)
Q Consensus       284 ------------l~-l~i~~~~l~~lp~~~~--~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~-----  343 (405)
                                  ++ +.++.+.++.+|..+.  .+++|+.|++++|.++.+|..       +.++++|++|++++     
T Consensus       478 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~-------~~~l~~L~~L~Ls~N~~ls  550 (636)
T 4eco_A          478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ-------PLNSSTLKGFGIRNQRDAQ  550 (636)
T ss_dssp             EETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCG-------GGGCSSCCEEECCSCBCTT
T ss_pred             ccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChh-------hhcCCCCCEEECCCCcccc
Confidence                        11 2223335667777776  888888888888888777765       56788888888843     


Q ss_pred             -CCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEe
Q 044605          344 -CPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLV  398 (405)
Q Consensus       344 -c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~  398 (405)
                       |...+.+|.. ..+++|++|++++|.-  ...+    +.+.  +.++.+.+.++.+
T Consensus       551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l--~~ip----~~~~--~~L~~L~Ls~N~l  599 (636)
T 4eco_A          551 GNRTLREWPEGITLCPSLTQLQIGSNDI--RKVN----EKIT--PNISVLDIKDNPN  599 (636)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC--CBCC----SCCC--TTCCEEECCSCTT
T ss_pred             cCcccccChHHHhcCCCCCEEECCCCcC--CccC----HhHh--CcCCEEECcCCCC
Confidence             4445566655 4556888888888743  1111    1111  6777777777744

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=2.1e-21  Score=202.33  Aligned_cols=323  Identities=14%  Similarity=0.106  Sum_probs=187.6

Q ss_pred             cccCchhhheeeEEEEEccCCCCcc------------------CccccC--CCccCcccCceeeCCCCCCCccccccccc
Q 044605           16 TINGDFTEIFVIYLILVGDLTESKE------------------MPLRIG--KLTSLRTLTKFAVGKSNCSGLSELRSSTL   75 (405)
Q Consensus        16 ~l~~~~~~~~~~L~~L~L~~~~i~~------------------lP~~i~--~L~~L~~L~~~~~~~~~~~~~~~L~~L~~   75 (405)
                      .+|..+. .+++|++|+|++|.++.                  +|.+++  ++++|++|++..... .+..+..++++.+
T Consensus       439 ~IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~  516 (876)
T 4ecn_A          439 FISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPE  516 (876)
T ss_dssp             EECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSS
T ss_pred             chhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCC
Confidence            3766544 57899999999999998                  999998  999999998644332 3345567888888


Q ss_pred             CCCceEEcccccCCC-hhhhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCc--ccCCCCCCCccE
Q 044605           76 LHEKLTILGLENVNV-AEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPA--WLGQSSFENLVV  152 (405)
Q Consensus        76 L~~~L~l~~l~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~--~~~~~~l~~L~~  152 (405)
                      |+ .|.+.....+.. ....                ........+..+++|+.|++.+|....+|.  ++.  .+++|+.
T Consensus       517 L~-~L~Ls~N~~lsg~~iP~----------------~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~  577 (876)
T 4ecn_A          517 LQ-SLNIACNRGISAAQLKA----------------DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ--KMVKLGL  577 (876)
T ss_dssp             CC-EEECTTCTTSCHHHHHH----------------HHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT--TCTTCCE
T ss_pred             CC-EEECcCCCCcccccchH----------------HHHhhhhcccccCCccEEEeeCCcCCccCChhhhh--cCCCCCE
Confidence            88 888865331211 0000                011111133445566666666665555665  454  5666666


Q ss_pred             EEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc-ccEEeeccCccccccCCC-----------
Q 044605          153 LRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC-LRELSIINCSKLKGRLPQ-----------  220 (405)
Q Consensus       153 L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~l~~-----------  220 (405)
                      |++++|. ++.+|.++.+++|+.|++.++. +..++.      ....+++ |++|+++++. +. .+|.           
T Consensus       578 L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~------~l~~l~~~L~~L~Ls~N~-L~-~lp~~~~~~~~~~L~  647 (876)
T 4ecn_A          578 LDCVHNK-VRHLEAFGTNVKLTDLKLDYNQ-IEEIPE------DFCAFTDQVEGLGFSHNK-LK-YIPNIFNAKSVYVMG  647 (876)
T ss_dssp             EECTTSC-CCBCCCCCTTSEESEEECCSSC-CSCCCT------TSCEECTTCCEEECCSSC-CC-SCCSCCCTTCSSCEE
T ss_pred             EECCCCC-cccchhhcCCCcceEEECcCCc-cccchH------HHhhccccCCEEECcCCC-CC-cCchhhhccccCCCC
Confidence            6666655 3455556666666666665543 223332      0112344 5555554432 22 2332           


Q ss_pred             -----------------------CCCcccEEEEeccC--CccccC-CCCCCcceEEEcCcCCccccccccccCCCCCC--
Q 044605          221 -----------------------HFSSLERIVIMSCE--QLLVSC-TTLPLLCELEIDGFGEVAWINRPVEAGIFDSS--  272 (405)
Q Consensus       221 -----------------------~~~~L~~L~l~~c~--~l~~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l--  272 (405)
                                             ..++|+.|++++|.  .+|..+ ..+++|+.|++++|...     .++...+...  
T Consensus       648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-----~ip~~~~~~~~~  722 (876)
T 4ecn_A          648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-----SIPENSLKPKDG  722 (876)
T ss_dssp             EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-----CCCTTSSSCTTS
T ss_pred             EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-----ccChHHhccccc
Confidence                                   12245555554432  222222 23555666666555332     3343333221  


Q ss_pred             -----CCC--eeecCCCCccEEecCCCCcccccccC--CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeec
Q 044605          273 -----NPG--PEKSRTEVLPWEIGSPDQESLPEGLH--KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSR  343 (405)
Q Consensus       273 -----~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~--~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~  343 (405)
                           ++|  |++++|          +++.+|..+.  .+++|+.|++++|.++.+|..       +.++++|+.|++++
T Consensus       723 ~l~nl~~L~~L~Ls~N----------~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~-------l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          723 NYKNTYLLTTIDLRFN----------KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ-------PLNSSQLKAFGIRH  785 (876)
T ss_dssp             CCTTGGGCCEEECCSS----------CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCG-------GGGCTTCCEEECCC
T ss_pred             cccccCCccEEECCCC----------CCccchHHhhhccCCCcCEEEeCCCCCCccchh-------hhcCCCCCEEECCC
Confidence                 134  455444          5667887776  888888888888888887766       56788888888876


Q ss_pred             ------CCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEee
Q 044605          344 ------CPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF  399 (405)
Q Consensus       344 ------c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~  399 (405)
                            |...+.+|.. ..+++|++|++++|.-  ...+    ..+.  +.++.+.+.++.+.
T Consensus       786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L--~~Ip----~~l~--~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI--RKVD----EKLT--PQLYILDIADNPNI  840 (876)
T ss_dssp             CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC--CBCC----SCCC--SSSCEEECCSCTTC
T ss_pred             CCCcccccccccChHHHhcCCCCCEEECCCCCC--CccC----Hhhc--CCCCEEECCCCCCC
Confidence                  4445566655 4567888888888853  1111    1111  57788888777553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.87  E-value=3.1e-21  Score=194.12  Aligned_cols=224  Identities=17%  Similarity=0.152  Sum_probs=124.1

Q ss_pred             CCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605          119 LKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK  198 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  198 (405)
                      +..+++|+.|++.++....+|.++.  .+ +|+.|++++|. +..+|. ..+++|+.|++.++.....++        ..
T Consensus       278 ~~~l~~L~~L~l~~~~l~~l~~~~~--~~-~L~~L~l~~n~-~~~l~~-~~l~~L~~L~l~~n~~~~~~~--------~~  344 (570)
T 2z63_A          278 FNCLTNVSSFSLVSVTIERVKDFSY--NF-GWQHLELVNCK-FGQFPT-LKLKSLKRLTFTSNKGGNAFS--------EV  344 (570)
T ss_dssp             TGGGTTCSEEEEESCEECSCCBCCS--CC-CCSEEEEESCB-CSSCCB-CBCSSCCEEEEESCBSCCBCC--------CC
T ss_pred             hcCcCcccEEEecCccchhhhhhhc--cC-CccEEeeccCc-ccccCc-ccccccCEEeCcCCccccccc--------cc
Confidence            3446778888888777667777776  55 88888888876 456654 567777777777654332221        23


Q ss_pred             CCCcccEEeeccCccccccC--C---CCCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605          199 GFPCLRELSIINCSKLKGRL--P---QHFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS  271 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~~l--~---~~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  271 (405)
                      .+++|++|+++++. +.+..  +   ..+++|+.|++++|.  .++..+..+++|++|++++|....    ..+...+..
T Consensus       345 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~  419 (570)
T 2z63_A          345 DLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ----MSEFSVFLS  419 (570)
T ss_dssp             BCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES----CTTSCTTTT
T ss_pred             cCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc----ccchhhhhc
Confidence            47777777777653 32111  1   146677777776654  223335566666666666664433    223334555


Q ss_pred             CCCC--eeecCCCCcc--------------EEecCCCCc--ccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCC
Q 044605          272 SNPG--PEKSRTEVLP--------------WEIGSPDQE--SLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNL  333 (405)
Q Consensus       272 l~~L--l~l~~~~~l~--------------l~i~~~~l~--~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l  333 (405)
                      +++|  +++++|....              +.++.+.+.  .+|..+..+++|+.|++++|.++.++...      +.++
T Consensus       420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l  493 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA------FNSL  493 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT------TTTC
T ss_pred             CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh------hhcc
Confidence            5555  5555553221              111111222  34555555666666666665555543222      3555


Q ss_pred             CCcCEEeeecCCCCcccCCC--CCcCCccEEeecCC
Q 044605          334 TSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLC  367 (405)
Q Consensus       334 ~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c  367 (405)
                      ++|++|++++|. ++.++..  ..+++|++|+++++
T Consensus       494 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          494 SSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCC
Confidence            666666666653 3334322  33456666666654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.86  E-value=5.9e-21  Score=193.57  Aligned_cols=218  Identities=19%  Similarity=0.180  Sum_probs=108.0

Q ss_pred             CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcC-C-CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSL-P-SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG  199 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l-~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  199 (405)
                      +++|+.|++.++....+|.++.  .+++|+.|++++|. +..+ | .++.+++|++|++.++.....++.     .....
T Consensus       277 l~~L~~L~l~~n~l~~lp~~l~--~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~  348 (606)
T 3t6q_A          277 FSGLQELDLTATHLSELPSGLV--GLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGT-----GCLEN  348 (606)
T ss_dssp             CTTCSEEECTTSCCSCCCSSCC--SCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCS-----STTTT
T ss_pred             ccCCCEEeccCCccCCCChhhc--ccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccch-----hhhhc
Confidence            4445555555544444444443  44555555555444 2222 1 244455555555544432222221     11223


Q ss_pred             CCcccEEeeccCccccccC--C---CCCCcccEEEEeccCC---ccccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605          200 FPCLRELSIINCSKLKGRL--P---QHFSSLERIVIMSCEQ---LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS  271 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l--~---~~~~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  271 (405)
                      +++|++|+++++. +.+..  +   ..+++|+.|++++|.-   .+..+..+++|+.|++++|....    ..+...+..
T Consensus       349 l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~  423 (606)
T 3t6q_A          349 LENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV----KDAQSPFQN  423 (606)
T ss_dssp             CTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC----CTTCCTTTT
T ss_pred             cCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC----cccchhhhC
Confidence            5666666665542 22111  1   1456666666665531   13455556666666666665443    333334555


Q ss_pred             CCCC--eeecCCCCccEEecCCCCcc-cccccCCCCCccEEEEeCCcccc--cccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          272 SNPG--PEKSRTEVLPWEIGSPDQES-LPEGLHKLSHITRISIVGSYLVS--FPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       272 l~~L--l~l~~~~~l~l~i~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                      +++|  +++++|          .+.. .|..+..+++|+.|++++|.++.  ++....     +..+++|++|++++|..
T Consensus       424 l~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~~l~~L~~L~Ls~n~l  488 (606)
T 3t6q_A          424 LHLLKVLNLSHS----------LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS-----LQTLGRLEILVLSFCDL  488 (606)
T ss_dssp             CTTCCEEECTTC----------CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG-----GGGCTTCCEEECTTSCC
T ss_pred             cccCCEEECCCC----------ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh-----hccCCCccEEECCCCcc
Confidence            5555  666555          2232 34456667777777777766654  222111     35566677777776643


Q ss_pred             CcccCCC-CCcCCccEEeecCC
Q 044605          347 LKSFPEN-GLLPSVVYLSIYLC  367 (405)
Q Consensus       347 l~~l~~~-~~~~~L~~L~i~~c  367 (405)
                      ....|.. ..+++|++|++++|
T Consensus       489 ~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          489 SSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECCSS
T ss_pred             CccChhhhccccCCCEEECCCC
Confidence            3332333 44456777777666

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=2e-22  Score=209.71  Aligned_cols=252  Identities=17%  Similarity=0.127  Sum_probs=154.8

Q ss_pred             CCCccEEEEEeeCCC-CCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGT-KFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG  199 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~-~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  199 (405)
                      +++|+.|++.+|... .+|.++.  .+++|+.|++++|.....+|. ++.+++|++|++.++.....++.      ....
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~~~~  464 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLS--NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------ELMY  464 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG------GGGG
T ss_pred             cCCccEEECCCCccccccCHHHh--cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH------HHcC
Confidence            566777777766543 5666666  677888888877763334443 67788888888877754444443      1223


Q ss_pred             CCcccEEeeccCccccccCCC---CCCcccEEEEeccC---CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCC
Q 044605          200 FPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE---QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSN  273 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~---~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~  273 (405)
                      +++|++|+++++ .+.+.+|.   .+++|+.|++++|.   .+|..+..+++|++|++++|...+    .+| ..+..++
T Consensus       465 l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p-~~l~~l~  538 (768)
T 3rgz_A          465 VKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG----NIP-AELGDCR  538 (768)
T ss_dssp             CTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE----ECC-GGGGGCT
T ss_pred             CCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC----cCC-HHHcCCC
Confidence            788899998886 45545564   57888999998875   347778888999999999987765    444 3666777


Q ss_pred             CC--eeecCCCCcc-----------------------EEecC-------------------------------------C
Q 044605          274 PG--PEKSRTEVLP-----------------------WEIGS-------------------------------------P  291 (405)
Q Consensus       274 ~L--l~l~~~~~l~-----------------------l~i~~-------------------------------------~  291 (405)
                      +|  +++++|....                       ..+..                                     +
T Consensus       539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  618 (768)
T 3rgz_A          539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR  618 (768)
T ss_dssp             TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred             CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            77  7776663221                       00000                                     0


Q ss_pred             CCc-ccccccCCCCCccEEEEeCCccc-ccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCc
Q 044605          292 DQE-SLPEGLHKLSHITRISIVGSYLV-SFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCP  368 (405)
Q Consensus       292 ~l~-~lp~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~  368 (405)
                      .++ .+|..+..+++|+.|++++|+++ .+|..       +++++.|+.|++++|...+.+|.. ..+++|++|+++++.
T Consensus       619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~-------l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-------IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             eecccCchhhhccccccEEECcCCcccccCCHH-------HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence            000 12334445666677777766665 45544       466666777777766555566655 445567777776653


Q ss_pred             chHHHhhcCcccccccccccCeeEecceEee
Q 044605          369 DLEEKCKKDEREYCHLVADIPFVQLNHKLVF  399 (405)
Q Consensus       369 ~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~  399 (405)
                      --     ....+.+..+..++.+.+..+.+.
T Consensus       692 l~-----g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          692 LD-----GRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CE-----ECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             cc-----CcCChHHhCCCCCCEEECcCCccc
Confidence            11     111223445566666666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=4.6e-21  Score=187.52  Aligned_cols=322  Identities=14%  Similarity=0.096  Sum_probs=185.8

Q ss_pred             cccccCchhhheeeEEEEEccCCCCccC-ccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChh
Q 044605           14 METINGDFTEIFVIYLILVGDLTESKEM-PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAE   92 (405)
Q Consensus        14 l~~l~~~~~~~~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~   92 (405)
                      +..+|.    ..+++++||+++|.++.+ |..++++++|++|++.............+..+.+|+ +|++.... +....
T Consensus        22 l~~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~-~L~Ls~n~-l~~~~   95 (455)
T 3v47_A           22 LHQVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI-ILKLDYNQ-FLQLE   95 (455)
T ss_dssp             CSSCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCC-EEECTTCT-TCEEC
T ss_pred             cccCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCC-EEeCCCCc-cCccC
Confidence            455655    246899999999999977 667999999999985443221112234466677777 77776532 11111


Q ss_pred             hhhhcccccccCC-hhhHHHHHHHhc--cCCCCCCccEEEEEeeCCCCC-Ccc-cCCCCCCCccEEEEEcCCCCCcC-CC
Q 044605           93 DAKEGNRTTSSDS-REVAEIQTRVLE--MLKPHYGLKELKVQNYGGTKF-PAW-LGQSSFENLVVLRFRNCNQCTSL-PS  166 (405)
Q Consensus        93 ~~~~~~l~~l~~~-~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~l-p~~-~~~~~l~~L~~L~l~~~~~~~~l-~~  166 (405)
                      ......+..++.. ...+......+.  .+..+++|+.|++.++....+ |.. +.  .+++|+.|++++|. +..+ +.
T Consensus        96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~  172 (455)
T 3v47_A           96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL--NMRRFHVLDLTFNK-VKSICEE  172 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG--GCTTCCEEECTTCC-BSCCCTT
T ss_pred             hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC--CCCcccEEeCCCCc-ccccChh
Confidence            1112222222220 000011111111  255566666666666554433 333 33  45666666666655 2222 11


Q ss_pred             -CCCC--CCccEEeecCCCCCeeeCC--CCC-CCCCCCCCCcccEEeeccCccccccCCC--------------------
Q 044605          167 -VGHL--PLLKNLVIKGMGRMAKAGT--TGG-DQQAAKGFPCLRELSIINCSKLKGRLPQ--------------------  220 (405)
Q Consensus       167 -l~~l--~~L~~L~l~~~~~l~~~~~--~~~-~~~~~~~~~~L~~L~l~~~~~l~~~l~~--------------------  220 (405)
                       +..+  ++|+.|++.++. +..++.  ++. .......+++|++|+++++. +.+..|.                    
T Consensus       173 ~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~  250 (455)
T 3v47_A          173 DLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSY  250 (455)
T ss_dssp             TSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred             hhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeecccc
Confidence             2222  344445444432 111111  000 00001234567777776652 1111110                    


Q ss_pred             ----------------------CCCcccEEEEeccCC---ccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC
Q 044605          221 ----------------------HFSSLERIVIMSCEQ---LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG  275 (405)
Q Consensus       221 ----------------------~~~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L  275 (405)
                                            ..++|+.|+++++.-   .+..+..+++|++|++++|...     .++...+..+++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L  325 (455)
T 3v47_A          251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-----KIDDNAFWGLTHL  325 (455)
T ss_dssp             TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-----EECTTTTTTCTTC
T ss_pred             ccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-----ccChhHhcCcccC
Confidence                                  135778888877642   2556777888888888888655     4455577777788


Q ss_pred             --eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCC
Q 044605          276 --PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE  352 (405)
Q Consensus       276 --l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~  352 (405)
                        |++++|          .++.+ |..+.++++|+.|++++|+++.++...      +.++++|++|++++| .++.+|.
T Consensus       326 ~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L~~L~L~~N-~l~~~~~  388 (455)
T 3v47_A          326 LKLNLSQN----------FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS------FLGLPNLKELALDTN-QLKSVPD  388 (455)
T ss_dssp             CEEECCSS----------CCCEECGGGGTTCTTCCEEECCSSCCCEECTTT------TTTCTTCCEEECCSS-CCSCCCT
T ss_pred             CEEECCCC----------ccCCcChhHhcCcccCCEEECCCCcccccChhh------ccccccccEEECCCC-ccccCCH
Confidence              888877          34444 567889999999999999988875544      478889999999986 4666765


Q ss_pred             C--CCcCCccEEeecCCc
Q 044605          353 N--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       353 ~--~~~~~L~~L~i~~c~  368 (405)
                      .  ..+++|++|+++++|
T Consensus       389 ~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          389 GIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             TTTTTCTTCCEEECCSSC
T ss_pred             hHhccCCcccEEEccCCC
Confidence            4  456799999998764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=1.6e-20  Score=180.07  Aligned_cols=208  Identities=11%  Similarity=0.022  Sum_probs=134.4

Q ss_pred             CCCCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605          121 PHYGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG  199 (405)
Q Consensus       121 ~~~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  199 (405)
                      .+++|+.|++.++....++ ..+.  .+++|+.|++++|. ++.+ +++.+++|+.|++.++ .+..++.          
T Consensus       139 ~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~-~~~~l~~L~~L~l~~n-~l~~~~~----------  203 (390)
T 3o6n_A          139 NTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNR-LTHV-DLSLIPSLFHANVSYN-LLSTLAI----------  203 (390)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTS--SCTTCCEEECCSSC-CSBC-CGGGCTTCSEEECCSS-CCSEEEC----------
T ss_pred             CCCCCcEEECCCCccCccChhhcc--CCCCCCEEECCCCc-CCcc-ccccccccceeecccc-cccccCC----------
Confidence            3455555555554433332 2232  44555555555544 3333 2344555555555543 2233322          


Q ss_pred             CCcccEEeeccCccccccCCCCCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--e
Q 044605          200 FPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--P  276 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l  276 (405)
                      .++|++|+++++ .+...-...+++|+.|+++++.-- ...+..+++|++|++++|...     .+....+..+++|  +
T Consensus       204 ~~~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          204 PIAVEELDASHN-SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-----KIMYHPFVKMQRLERL  277 (390)
T ss_dssp             CSSCSEEECCSS-CCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-----EEESGGGTTCSSCCEE
T ss_pred             CCcceEEECCCC-eeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCC-----CcChhHccccccCCEE
Confidence            457777777775 333222235678888888876522 356677889999999988655     3445577777788  8


Q ss_pred             eecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCc
Q 044605          277 EKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLL  356 (405)
Q Consensus       277 ~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~  356 (405)
                      +++++          .++.+|..+..+++|+.|++++|.++.+|..       +..+++|++|++++|+ ++.++. ..+
T Consensus       278 ~L~~n----------~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~l~~L~~L~L~~N~-i~~~~~-~~~  338 (390)
T 3o6n_A          278 YISNN----------RLVALNLYGQPIPTLKVLDLSHNHLLHVERN-------QPQFDRLENLYLDHNS-IVTLKL-STH  338 (390)
T ss_dssp             ECCSS----------CCCEEECSSSCCTTCCEEECCSSCCCCCGGG-------HHHHTTCSEEECCSSC-CCCCCC-CTT
T ss_pred             ECCCC----------cCcccCcccCCCCCCCEEECCCCcceecCcc-------ccccCcCCEEECCCCc-cceeCc-hhh
Confidence            88777          5567777778899999999999999888765       5678899999999875 566663 445


Q ss_pred             CCccEEeecCCc
Q 044605          357 PSVVYLSIYLCP  368 (405)
Q Consensus       357 ~~L~~L~i~~c~  368 (405)
                      ++|++|+++++|
T Consensus       339 ~~L~~L~l~~N~  350 (390)
T 3o6n_A          339 HTLKNLTLSHND  350 (390)
T ss_dssp             CCCSEEECCSSC
T ss_pred             ccCCEEEcCCCC
Confidence            699999999976

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.85  E-value=3.4e-20  Score=174.88  Aligned_cols=299  Identities=13%  Similarity=0.134  Sum_probs=212.0

Q ss_pred             heeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccccc
Q 044605           24 IFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSS  103 (405)
Q Consensus        24 ~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~  103 (405)
                      .++++++|+++++.++.+|. ++.+++|++|++...   ....+..+..+.+|+ .|.+.... +..             
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n---~i~~~~~~~~l~~L~-~L~L~~n~-i~~-------------  102 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN---QITDISPLSNLVKLT-NLYIGTNK-ITD-------------  102 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS---CCCCCGGGTTCTTCC-EEECCSSC-CCC-------------
T ss_pred             hcccccEEEEeCCccccchh-hhhcCCccEEEccCC---ccccchhhhcCCcCC-EEEccCCc-ccC-------------
Confidence            46789999999999998874 889999999975333   222333466777777 77775432 111             


Q ss_pred             CChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCC
Q 044605          104 DSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGR  183 (405)
Q Consensus       104 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~  183 (405)
                                  +..+..+++|+.|++.++....++. +.  .+++|+.|++++|.....++.+..+++|++|++.++. 
T Consensus       103 ------------~~~~~~l~~L~~L~l~~n~i~~~~~-~~--~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-  166 (347)
T 4fmz_A          103 ------------ISALQNLTNLRELYLNEDNISDISP-LA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-  166 (347)
T ss_dssp             ------------CGGGTTCTTCSEEECTTSCCCCCGG-GT--TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-
T ss_pred             ------------chHHcCCCcCCEEECcCCcccCchh-hc--cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-
Confidence                        1235668889999999888777765 44  7899999999999878888888899999999998864 


Q ss_pred             CeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC--CCCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCcccc
Q 044605          184 MAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP--QHFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWI  260 (405)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~--~~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~  260 (405)
                      +..++.       ...+++|++|+++++ .+.+ ++  ..+++|+.++++++.-. ...+..+++|++|++++|....  
T Consensus       167 ~~~~~~-------~~~l~~L~~L~l~~n-~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~--  235 (347)
T 4fmz_A          167 VKDVTP-------IANLTDLYSLSLNYN-QIED-ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD--  235 (347)
T ss_dssp             CCCCGG-------GGGCTTCSEEECTTS-CCCC-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--
T ss_pred             cCCchh-------hccCCCCCEEEccCC-cccc-cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCC--
Confidence            333332       334889999999886 3442 33  36788999999886522 1236778999999999986553  


Q ss_pred             ccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCE
Q 044605          261 NRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLER  338 (405)
Q Consensus       261 ~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~  338 (405)
                         ++.  +..+++|  +++++|          .++.++ .+..+++|+.|++++|.++.++.        +..+++|++
T Consensus       236 ---~~~--~~~l~~L~~L~l~~n----------~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~  291 (347)
T 4fmz_A          236 ---LSP--LANLSQLTWLEIGTN----------QISDIN-AVKDLTKLKMLNVGSNQISDISV--------LNNLSQLNS  291 (347)
T ss_dssp             ---CGG--GTTCTTCCEEECCSS----------CCCCCG-GGTTCTTCCEEECCSSCCCCCGG--------GGGCTTCSE
T ss_pred             ---Ccc--hhcCCCCCEEECCCC----------ccCCCh-hHhcCCCcCEEEccCCccCCChh--------hcCCCCCCE
Confidence               232  6677777  788777          334443 57789999999999988887742        467889999


Q ss_pred             EeeecCCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEee
Q 044605          339 LELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF  399 (405)
Q Consensus       339 L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~  399 (405)
                      |++++|......+.. ..+++|++|++++|+ +...      ..+..+++++.+.+.++.|.
T Consensus       292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~------~~~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI------RPLASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC------GGGGGCTTCSEESSSCC---
T ss_pred             EECcCCcCCCcChhHhhccccCCEEEccCCc-cccc------cChhhhhccceeehhhhccc
Confidence            999998654343333 445689999999986 3221      12556788888888888765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=1.1e-20  Score=191.50  Aligned_cols=334  Identities=17%  Similarity=0.161  Sum_probs=168.5

Q ss_pred             cccccCchhhheeeEEEEEccCCCCccC-ccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChh
Q 044605           14 METINGDFTEIFVIYLILVGDLTESKEM-PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAE   92 (405)
Q Consensus        14 l~~l~~~~~~~~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~   92 (405)
                      +.++|.++.   ..+++||+++|.++.+ |..|+++++|++|++....- .......+.++.+|+ .|.+.... +....
T Consensus        24 l~~iP~~l~---~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~-~L~Ls~n~-l~~~~   97 (606)
T 3t6q_A           24 LNEIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI-YWIHEDTFQSQHRLD-TLVLTANP-LIFMA   97 (606)
T ss_dssp             CSSCCTTSC---TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC-CEECTTTTTTCTTCC-EEECTTCC-CSEEC
T ss_pred             cccCcCCCC---CcCcEEEccCCccCcCChhHhccCccceEEECCCCcc-ceeChhhccCccccC-eeeCCCCc-ccccC
Confidence            456666543   4678888888888876 45688888888886433211 112233455566666 66665422 11111


Q ss_pred             hhhhcccccccCCh-hhHHHHHHHhccCCCCCCccEEEEEeeCCCCC--CcccCCCCCCCccEEEEEcCCCCCcCCC--C
Q 044605           93 DAKEGNRTTSSDSR-EVAEIQTRVLEMLKPHYGLKELKVQNYGGTKF--PAWLGQSSFENLVVLRFRNCNQCTSLPS--V  167 (405)
Q Consensus        93 ~~~~~~l~~l~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l--p~~~~~~~l~~L~~L~l~~~~~~~~l~~--l  167 (405)
                      ......+..++... ..+.........+..+++|+.|++.++....+  |.+.   .+++|+.|++++|. ++.++.  +
T Consensus        98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~-l~~~~~~~~  173 (606)
T 3t6q_A           98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF---PTEKLKVLDFQNNA-IHYLSKEDM  173 (606)
T ss_dssp             TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC---CCTTCCEEECCSSC-CCEECHHHH
T ss_pred             hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc---CCcccCEEEcccCc-ccccChhhh
Confidence            11222333333310 00111111123466778888888888766554  3332   37788888887776 444432  5


Q ss_pred             CCCCCcc--EEeecCCCCCeeeCC-CCC----------------------------------------------------
Q 044605          168 GHLPLLK--NLVIKGMGRMAKAGT-TGG----------------------------------------------------  192 (405)
Q Consensus       168 ~~l~~L~--~L~l~~~~~l~~~~~-~~~----------------------------------------------------  192 (405)
                      +.+++|+  .|++.++.-....+. +..                                                    
T Consensus       174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~  253 (606)
T 3t6q_A          174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE  253 (606)
T ss_dssp             HTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred             hhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence            5566666  555555432111111 100                                                    


Q ss_pred             ----------------CCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC--Cc-cccCCCCCCcceEE
Q 044605          193 ----------------DQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QL-LVSCTTLPLLCELE  250 (405)
Q Consensus       193 ----------------~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~  250 (405)
                                      .......+++|++|+++++ .++ .+|.   .+++|++|++++|.  .+ +..+..+++|++|+
T Consensus       254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  331 (606)
T 3t6q_A          254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS  331 (606)
T ss_dssp             SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred             CceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence                            0011223556666666654 333 3443   34566666666553  11 33455566666666


Q ss_pred             EcCcCCccccccccccCCCCCCCCC--eeecCCCCcc----------------EEecCCCCccc-ccccCCCCCccEEEE
Q 044605          251 IDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLP----------------WEIGSPDQESL-PEGLHKLSHITRISI  311 (405)
Q Consensus       251 l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~----------------l~i~~~~l~~l-p~~~~~l~~L~~L~l  311 (405)
                      +++|....    .++...+..+++|  ++++++....                +.++.+.+..+ |..+..+++|+.|++
T Consensus       332 l~~n~~~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  407 (606)
T 3t6q_A          332 IKGNTKRL----ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL  407 (606)
T ss_dssp             CCSCSSCC----BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred             CCCCCccc----ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence            66665443    4455555666666  6655553221                12222223322 334455555555555


Q ss_pred             eCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCc
Q 044605          312 VGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCP  368 (405)
Q Consensus       312 ~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~  368 (405)
                      ++|.++.......     +.++++|++|++++|......+.. ..+++|++|++++|+
T Consensus       408 ~~n~l~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          408 AFTRLKVKDAQSP-----FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             TTCCEECCTTCCT-----TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred             CCCcCCCcccchh-----hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence            5555543321111     355666777777766543333332 344567777777664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.85  E-value=2.8e-20  Score=175.47  Aligned_cols=278  Identities=14%  Similarity=0.084  Sum_probs=206.3

Q ss_pred             hhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccc
Q 044605           22 TEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTT  101 (405)
Q Consensus        22 ~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~  101 (405)
                      ...+++|++|++++|.++.+|. ++++++|++|++...   ....+..+..+.+|+ +|.+.+.. +...          
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n---~i~~~~~~~~l~~L~-~L~l~~n~-i~~~----------  125 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN---KITDISALQNLTNLR-ELYLNEDN-ISDI----------  125 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS---CCCCCGGGTTCTTCS-EEECTTSC-CCCC----------
T ss_pred             hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC---cccCchHHcCCCcCC-EEECcCCc-ccCc----------
Confidence            3457899999999999999988 999999999975433   233455677778787 77776432 1110          


Q ss_pred             ccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCC
Q 044605          102 SSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGM  181 (405)
Q Consensus       102 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~  181 (405)
                                     ..+..+++|+.|++.++.....+..+.  .+++|+.|++++|. +..++.+..+++|++|++.++
T Consensus       126 ---------------~~~~~l~~L~~L~l~~n~~~~~~~~~~--~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          126 ---------------SPLANLTKMYSLNLGANHNLSDLSPLS--NMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYN  187 (347)
T ss_dssp             ---------------GGGTTCTTCCEEECTTCTTCCCCGGGT--TCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECTTS
T ss_pred             ---------------hhhccCCceeEEECCCCCCcccccchh--hCCCCcEEEecCCC-cCCchhhccCCCCCEEEccCC
Confidence                           115568899999999885544444455  78999999999987 667767889999999999987


Q ss_pred             CCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC-CCCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCcc
Q 044605          182 GRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP-QHFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVA  258 (405)
Q Consensus       182 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~-~~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~  258 (405)
                      . +..++.       ...+++|+.|++.++ .+.+..+ ..+++|+.|++++|.  .++. +..+++|++|++++|....
T Consensus       188 ~-l~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          188 Q-IEDISP-------LASLTSLHYFTAYVN-QITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             C-CCCCGG-------GGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             c-cccccc-------ccCCCccceeecccC-CCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC
Confidence            4 444433       334899999999886 4442222 368999999999875  3333 7889999999999986542


Q ss_pred             ccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCc
Q 044605          259 WINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSL  336 (405)
Q Consensus       259 ~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L  336 (405)
                           +  ..+..+++|  +++++|          .++.++ .+..+++|+.|++++|.++.++...      +.++++|
T Consensus       258 -----~--~~~~~l~~L~~L~l~~n----------~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~------l~~l~~L  313 (347)
T 4fmz_A          258 -----I--NAVKDLTKLKMLNVGSN----------QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEV------IGGLTNL  313 (347)
T ss_dssp             -----C--GGGTTCTTCCEEECCSS----------CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHH------HHTCTTC
T ss_pred             -----C--hhHhcCCCcCEEEccCC----------ccCCCh-hhcCCCCCCEEECcCCcCCCcChhH------hhccccC
Confidence                 2  356777778  888887          334554 4779999999999999888665433      4678999


Q ss_pred             CEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605          337 ERLELSRCPILKSFPENGLLPSVVYLSIYLCP  368 (405)
Q Consensus       337 ~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~  368 (405)
                      ++|++++|+. +.++....+++|++|++++|+
T Consensus       314 ~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          314 TTLFLSQNHI-TDIRPLASLSKMDSADFANQV  344 (347)
T ss_dssp             SEEECCSSSC-CCCGGGGGCTTCSEESSSCC-
T ss_pred             CEEEccCCcc-ccccChhhhhccceeehhhhc
Confidence            9999999874 555445455799999999985

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=2.6e-20  Score=188.43  Aligned_cols=287  Identities=10%  Similarity=0.020  Sum_probs=173.5

Q ss_pred             cccCchhhheeeEEEEEccCCCCccCcc-ccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhh
Q 044605           16 TINGDFTEIFVIYLILVGDLTESKEMPL-RIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDA   94 (405)
Q Consensus        16 ~l~~~~~~~~~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~   94 (405)
                      .+|..++..+++|++|++++|.++.+|. .|+++.+|++|++....- .......++.+.+|+ .|.+.... +...   
T Consensus        65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~-l~~l---  138 (597)
T 3oja_B           65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLT-VLVLERND-LSSL---  138 (597)
T ss_dssp             EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC-CCCC---
T ss_pred             CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC-CCCCHHHHcCCCCCC-EEEeeCCC-CCCC---
Confidence            3444444455566666666666555543 456666666655322111 111122234444444 44443211 0000   


Q ss_pred             hhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCc
Q 044605           95 KEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLL  173 (405)
Q Consensus        95 ~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L  173 (405)
                                          ....+..+++|+.|++.+|....++ .++.  .+++|+.|++++|. ++.+ +++.+++|
T Consensus       139 --------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~-~~~~l~~L  194 (597)
T 3oja_B          139 --------------------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNR-LTHV-DLSLIPSL  194 (597)
T ss_dssp             --------------------CTTTTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECTTSC-CSBC-CGGGCTTC
T ss_pred             --------------------CHHHhccCCCCCEEEeeCCcCCCCChhhhh--cCCcCcEEECcCCC-CCCc-Chhhhhhh
Confidence                                0011234555666666655443332 2333  45566666665554 3333 24445666


Q ss_pred             cEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCc-cccCCCCCCcceEEEc
Q 044605          174 KNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQL-LVSCTTLPLLCELEID  252 (405)
Q Consensus       174 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~  252 (405)
                      +.|++.++ .+..++.          .++|++|+++++ .+....+...++|+.|++++|.-- +..+..+++|+.|+++
T Consensus       195 ~~L~l~~n-~l~~l~~----------~~~L~~L~ls~n-~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls  262 (597)
T 3oja_B          195 FHANVSYN-LLSTLAI----------PIAVEELDASHN-SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS  262 (597)
T ss_dssp             SEEECCSS-CCSEEEC----------CTTCSEEECCSS-CCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             hhhhcccC-ccccccC----------CchhheeeccCC-cccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECC
Confidence            66666553 2333322          567778887775 343222335678999999887522 4667778999999999


Q ss_pred             CcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccC
Q 044605          253 GFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFV  330 (405)
Q Consensus       253 ~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l  330 (405)
                      +|...     .+++..+..+++|  |++++|          .++.+|..+..+++|+.|++++|.++.+|..       +
T Consensus       263 ~N~l~-----~~~~~~~~~l~~L~~L~Ls~N----------~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~-------~  320 (597)
T 3oja_B          263 YNELE-----KIMYHPFVKMQRLERLYISNN----------RLVALNLYGQPIPTLKVLDLSHNHLLHVERN-------Q  320 (597)
T ss_dssp             SSCCC-----EEESGGGTTCSSCCEEECTTS----------CCCEEECSSSCCTTCCEEECCSSCCCCCGGG-------H
T ss_pred             CCccC-----CCCHHHhcCccCCCEEECCCC----------CCCCCCcccccCCCCcEEECCCCCCCccCcc-------c
Confidence            98765     3455577888888  888887          5567787778899999999999999988866       5


Q ss_pred             CCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605          331 RNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCP  368 (405)
Q Consensus       331 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~  368 (405)
                      ..+++|++|++++|. +..++. ..+++|+.|+++++|
T Consensus       321 ~~l~~L~~L~L~~N~-l~~~~~-~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          321 PQFDRLENLYLDHNS-IVTLKL-STHHTLKNLTLSHND  356 (597)
T ss_dssp             HHHTTCSEEECCSSC-CCCCCC-CTTCCCSEEECCSSC
T ss_pred             ccCCCCCEEECCCCC-CCCcCh-hhcCCCCEEEeeCCC
Confidence            678999999999976 555654 344699999999986

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.84  E-value=3e-19  Score=175.35  Aligned_cols=320  Identities=16%  Similarity=0.149  Sum_probs=161.6

Q ss_pred             hheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccc
Q 044605           23 EIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTS  102 (405)
Q Consensus        23 ~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l  102 (405)
                      ..+++|++||+++|.++.+|. ++++.+|++|++...   ....+..++.+.+|+ .|.+.... +.....  ...+..+
T Consensus        65 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n---~l~~~~~~~~l~~L~-~L~L~~n~-l~~~~~--~~~l~~L  136 (466)
T 1o6v_A           65 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN---QIADITPLANLTNLT-GLTLFNNQ-ITDIDP--LKNLTNL  136 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS---CCCCCGGGTTCTTCC-EEECCSSC-CCCCGG--GTTCTTC
T ss_pred             hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC---ccccChhhcCCCCCC-EEECCCCC-CCCChH--HcCCCCC
Confidence            346788888888888887776 788888888864322   222223366666666 66665432 111110  1111111


Q ss_pred             cCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCC
Q 044605          103 SDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMG  182 (405)
Q Consensus       103 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~  182 (405)
                      +........... ...+..+++|+.|++.+. ...++. +.  .+++|+.|++++|. +..++.+..+++|++|++.++.
T Consensus       137 ~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~-~~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~  210 (466)
T 1o6v_A          137 NRLELSSNTISD-ISALSGLTSLQQLSFGNQ-VTDLKP-LA--NLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQ  210 (466)
T ss_dssp             SEEEEEEEEECC-CGGGTTCTTCSEEEEEES-CCCCGG-GT--TCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC
T ss_pred             CEEECCCCccCC-ChhhccCCcccEeecCCc-ccCchh-hc--cCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCc
Confidence            110000000000 011333444444444321 111111 22  44555555555554 4444445555555555555442


Q ss_pred             CCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC--CCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccc
Q 044605          183 RMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ--HFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAW  259 (405)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~--~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~  259 (405)
                       +..+..       ...+++|++|+++++ .+++ ++.  .+++|+.|++++|.-- ...+..+++|+.|++++|.... 
T Consensus       211 -l~~~~~-------~~~l~~L~~L~l~~n-~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-  279 (466)
T 1o6v_A          211 -ISDITP-------LGILTNLDELSLNGN-QLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-  279 (466)
T ss_dssp             -CCCCGG-------GGGCTTCCEEECCSS-CCCC-CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-
T ss_pred             -cccccc-------ccccCCCCEEECCCC-Cccc-chhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc-
Confidence             221211       223566666666664 2331 221  4566777776665411 1225566777777777665432 


Q ss_pred             cccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcC
Q 044605          260 INRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLE  337 (405)
Q Consensus       260 ~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~  337 (405)
                          ++.  +..+++|  +++++|          .++.++. +..+++|+.|++++|.++.++.        +..+++|+
T Consensus       280 ----~~~--~~~l~~L~~L~L~~n----------~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~  334 (466)
T 1o6v_A          280 ----ISP--LAGLTALTNLELNEN----------QLEDISP-ISNLKNLTYLTLYFNNISDISP--------VSSLTKLQ  334 (466)
T ss_dssp             ----CGG--GTTCTTCSEEECCSS----------CCSCCGG-GGGCTTCSEEECCSSCCSCCGG--------GGGCTTCC
T ss_pred             ----ccc--ccCCCccCeEEcCCC----------cccCchh-hcCCCCCCEEECcCCcCCCchh--------hccCccCC
Confidence                221  4455555  666655          3344443 5567777777777766665543        25667777


Q ss_pred             EEeeecCCCCcccCCCCCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEeeC
Q 044605          338 RLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVFD  400 (405)
Q Consensus       338 ~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~  400 (405)
                      +|++++| .++.++....+++|++|++++|+- ....      ....+..++.+.+.++.++.
T Consensus       335 ~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l-~~~~------~~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          335 RLFFYNN-KVSDVSSLANLTNINWLSAGHNQI-SDLT------PLANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CBCG------GGTTCTTCCEEECCCEEEEC
T ss_pred             EeECCCC-ccCCchhhccCCCCCEEeCCCCcc-Cccc------hhhcCCCCCEEeccCCcccC
Confidence            7777776 344554434556777777777632 1111      13445666667777666654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=9.7e-21  Score=197.25  Aligned_cols=319  Identities=12%  Similarity=0.052  Sum_probs=209.6

Q ss_pred             ccCch-hhheeeEEEEEccCCCC-ccCccccCCCccCcccCceeeCCCCC-CCcccccccc-------cCCCceEEcccc
Q 044605           17 INGDF-TEIFVIYLILVGDLTES-KEMPLRIGKLTSLRTLTKFAVGKSNC-SGLSELRSST-------LLHEKLTILGLE   86 (405)
Q Consensus        17 l~~~~-~~~~~~L~~L~L~~~~i-~~lP~~i~~L~~L~~L~~~~~~~~~~-~~~~~L~~L~-------~L~~~L~l~~l~   86 (405)
                      +|..+ +..+++|++|+|++|.+ +.+|..++++++|++|++.....-.+ ..+..++.+.       +|+ .|.+....
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~-~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC-EEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc-EEEeeCCc
Confidence            55554 34678999999999975 57899999999999997543321111 2233344444       676 77765432


Q ss_pred             cCCChhh-hhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCC-ccEEEEEcCCCCCcC
Q 044605           87 NVNVAED-AKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFEN-LVVLRFRNCNQCTSL  164 (405)
Q Consensus        87 ~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~-L~~L~l~~~~~~~~l  164 (405)
                      - ...+. .....+..+............+. .+..+++|+.|++.+|....+|.++.  .+++ |+.|++++|. ++.+
T Consensus       560 L-~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~--~l~~~L~~L~Ls~N~-L~~l  634 (876)
T 4ecn_A          560 L-EEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFC--AFTDQVEGLGFSHNK-LKYI  634 (876)
T ss_dssp             C-CBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSC--EECTTCCEEECCSSC-CCSC
T ss_pred             C-CccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHh--hccccCCEEECcCCC-CCcC
Confidence            1 12211 12233333333110000011222 56677888888888877777787766  6777 8888888887 5566


Q ss_pred             CC-CCCC--CCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC----CCCcccEEEEeccC--C
Q 044605          165 PS-VGHL--PLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSCE--Q  235 (405)
Q Consensus       165 ~~-l~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c~--~  235 (405)
                      |. +..+  ++|+.|+++++.-...++.+.. .......++|++|+++++ .+. .+|.    .+++|+.|++++|.  .
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~-~l~~~~~~~L~~L~Ls~N-~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~  711 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISC-SMDDYKGINASTVTLSYN-EIQ-KFPTELFATGSPISTIILSNNLMTS  711 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSS-CTTTCCCCCEEEEECCSS-CCC-SCCHHHHHTTCCCSEEECCSCCCSC
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchh-hhccccCCCcCEEEccCC-cCC-ccCHHHHccCCCCCEEECCCCcCCc
Confidence            65 3433  3488888887654332222000 001123458999999986 455 4664    57999999999874  3


Q ss_pred             ccccCC--------CCCCcceEEEcCcCCccccccccccCCC-CCCCCC--eeecCCCCccEEecCCCCcccccccCCCC
Q 044605          236 LLVSCT--------TLPLLCELEIDGFGEVAWINRPVEAGIF-DSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLS  304 (405)
Q Consensus       236 l~~~l~--------~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~  304 (405)
                      +|..+.        ++++|+.|++++|...     .+|.... ..+++|  |++++|          .++.+|..+.+++
T Consensus       712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-----~lp~~l~~~~l~~L~~L~Ls~N----------~L~~lp~~l~~L~  776 (876)
T 4ecn_A          712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-----SLSDDFRATTLPYLSNMDVSYN----------CFSSFPTQPLNSS  776 (876)
T ss_dssp             CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-----CCCGGGSTTTCTTCCEEECCSS----------CCSSCCCGGGGCT
T ss_pred             cChHHhccccccccccCCccEEECCCCCCc-----cchHHhhhccCCCcCEEEeCCC----------CCCccchhhhcCC
Confidence            444332        2349999999999654     4555333 377788  888887          5567898999999


Q ss_pred             CccEEEEeC------Cccc-ccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605          305 HITRISIVG------SYLV-SFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCP  368 (405)
Q Consensus       305 ~L~~L~l~~------~~l~-~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~  368 (405)
                      +|+.|++++      |++. .+|..       +.++++|++|++++|.. +.+|.. ..++|+.|++++|+
T Consensus       777 ~L~~L~Ls~N~~ls~N~l~~~ip~~-------l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~  838 (876)
T 4ecn_A          777 QLKAFGIRHQRDAEGNRILRQWPTG-------ITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNP  838 (876)
T ss_dssp             TCCEEECCCCBCTTCCBCCCCCCTT-------GGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCT
T ss_pred             CCCEEECCCCCCcccccccccChHH-------HhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCC
Confidence            999999976      4443 55554       68899999999999865 899876 34699999999997

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=2.7e-19  Score=176.11  Aligned_cols=293  Identities=15%  Similarity=0.098  Sum_probs=206.2

Q ss_pred             CcccccCchhhheeeEEEEEccCCCCccCc-cccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCCh
Q 044605           13 RMETINGDFTEIFVIYLILVGDLTESKEMP-LRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVA   91 (405)
Q Consensus        13 ~l~~l~~~~~~~~~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~   91 (405)
                      .+..+|..+.   +.+++|||++|.++.++ ..|+++.+|++|++....- .......+.++.+|+ .|.+.... +...
T Consensus        22 ~l~~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~-~L~L~~n~-l~~~   95 (477)
T 2id5_A           22 RFVAVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLR-TLGLRSNR-LKLI   95 (477)
T ss_dssp             CCSSCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEECTTTTTTCTTCC-EEECCSSC-CCSC
T ss_pred             CcCcCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc-CEeChhhhhCCccCC-EEECCCCc-CCcc
Confidence            3566776653   58899999999999875 5699999999997532211 112234566666676 77775421 1110


Q ss_pred             hhhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCC--CCC
Q 044605           92 EDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLP--SVG  168 (405)
Q Consensus        92 ~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~  168 (405)
                                             ....+..+++|+.|++.++....+ |..+.  .+++|+.|++++|. +..++  .+.
T Consensus        96 -----------------------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~~  149 (477)
T 2id5_A           96 -----------------------PLGVFTGLSNLTKLDISENKIVILLDYMFQ--DLYNLKSLEVGDND-LVYISHRAFS  149 (477)
T ss_dssp             -----------------------CTTSSTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEEECCTT-CCEECTTSST
T ss_pred             -----------------------CcccccCCCCCCEEECCCCccccCChhHcc--ccccCCEEECCCCc-cceeChhhcc
Confidence                                   112355678899999988776554 33444  68899999998887 55443  478


Q ss_pred             CCCCccEEeecCCCCCeeeCC--CCCCCCCCCCCCcccEEeeccCccccccCC---CCCCcccEEEEeccCCc---cccC
Q 044605          169 HLPLLKNLVIKGMGRMAKAGT--TGGDQQAAKGFPCLRELSIINCSKLKGRLP---QHFSSLERIVIMSCEQL---LVSC  240 (405)
Q Consensus       169 ~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~---~~~~~L~~L~l~~c~~l---~~~l  240 (405)
                      .+++|++|++.++. +..++.  ++       .+++|+.|++.++ .+.+..+   ..+++|+.|++++|..+   +..+
T Consensus       150 ~l~~L~~L~l~~n~-l~~~~~~~l~-------~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  220 (477)
T 2id5_A          150 GLNSLEQLTLEKCN-LTSIPTEALS-------HLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC  220 (477)
T ss_dssp             TCTTCCEEEEESCC-CSSCCHHHHT-------TCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT
T ss_pred             CCCCCCEEECCCCc-CcccChhHhc-------ccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCccc
Confidence            89999999998864 444432  33       3889999999885 3443322   26788999999987644   4444


Q ss_pred             CCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccc-cccCCCCCccEEEEeCCccc
Q 044605          241 TTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLV  317 (405)
Q Consensus       241 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~  317 (405)
                      ....+|+.|++++|...     .++...+..+++|  |+++++          .++.++ ..+..+++|+.|++++|+++
T Consensus       221 ~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (477)
T 2id5_A          221 LYGLNLTSLSITHCNLT-----AVPYLAVRHLVYLRFLNLSYN----------PISTIEGSMLHELLRLQEIQLVGGQLA  285 (477)
T ss_dssp             TTTCCCSEEEEESSCCC-----SCCHHHHTTCTTCCEEECCSS----------CCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred             ccCccccEEECcCCccc-----ccCHHHhcCccccCeeECCCC----------cCCccChhhccccccCCEEECCCCccc
Confidence            45668999999998644     5565567777788  888877          345554 35789999999999999999


Q ss_pred             ccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          318 SFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       318 ~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      .++...|      .++++|++|++++| .++.++..  ..+++|++|+++++|
T Consensus       286 ~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          286 VVEPYAF------RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             EECTTTB------TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             eECHHHh------cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence            8865544      78899999999997 56677654  445799999999876

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=3.4e-21  Score=196.27  Aligned_cols=320  Identities=12%  Similarity=0.075  Sum_probs=203.6

Q ss_pred             ccCchh-hheeeEEEEEccCCCCc-cCccccCCCccCcccCceeeCCCCC-CCccccccc------ccCCCceEEccccc
Q 044605           17 INGDFT-EIFVIYLILVGDLTESK-EMPLRIGKLTSLRTLTKFAVGKSNC-SGLSELRSS------TLLHEKLTILGLEN   87 (405)
Q Consensus        17 l~~~~~-~~~~~L~~L~L~~~~i~-~lP~~i~~L~~L~~L~~~~~~~~~~-~~~~~L~~L------~~L~~~L~l~~l~~   87 (405)
                      +|..+. ..+++|++|++++|.+. .+|..++++++|++|++.....-.+ ..+..++.+      .+|+ .|.+....-
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYNNL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEECCSSCC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC-EEECCCCcC
Confidence            555543 25779999999999865 7899999999999997543321111 233445554      6677 777765322


Q ss_pred             CCChhh-hhhcccccccCChh-hHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCC-ccEEEEEcCCCCCcC
Q 044605           88 VNVAED-AKEGNRTTSSDSRE-VAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFEN-LVVLRFRNCNQCTSL  164 (405)
Q Consensus        88 ~~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~-L~~L~l~~~~~~~~l  164 (405)
                      . ..+. .....+..++.... .+...+.+. .+..+++|+.|++.++....+|.++.  .+++ |+.|++++|. ++.+
T Consensus       318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~--~l~~~L~~L~Ls~N~-l~~l  392 (636)
T 4eco_A          318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFC--GFTEQVENLSFAHNK-LKYI  392 (636)
T ss_dssp             S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSE--EECTTCCEEECCSSC-CSSC
T ss_pred             C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhh--hhcccCcEEEccCCc-Cccc
Confidence            1 2211 12233333332100 000000122 44456677777777766556777666  6777 8888888777 5566


Q ss_pred             CC-CCC--CCCccEEeecCCCCCeeeCC-CCCCCCCCCCCCcccEEeeccCccccccCCC----CCCcccEEEEeccC--
Q 044605          165 PS-VGH--LPLLKNLVIKGMGRMAKAGT-TGGDQQAAKGFPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSCE--  234 (405)
Q Consensus       165 ~~-l~~--l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c~--  234 (405)
                      |. ++.  +++|++|++.++.-...++. ++........+++|++|+++++ .++ .+|.    .+++|+.|+++++.  
T Consensus       393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~-~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QIS-KFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence            65 333  34788888877654333332 2200001113568899998885 455 4554    47889999998864  


Q ss_pred             CccccCC--------CCCCcceEEEcCcCCccccccccccCCC-CCCCCC--eeecCCCCccEEecCCCCcccccccCCC
Q 044605          235 QLLVSCT--------TLPLLCELEIDGFGEVAWINRPVEAGIF-DSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKL  303 (405)
Q Consensus       235 ~l~~~l~--------~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l  303 (405)
                      .+|..+.        .+++|+.|++++|...     .++...+ ..+++|  ++++++          .++.+|..+..+
T Consensus       471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~~~l~~L~~L~Ls~N----------~l~~ip~~~~~l  535 (636)
T 4eco_A          471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-----KLSDDFRATTLPYLVGIDLSYN----------SFSKFPTQPLNS  535 (636)
T ss_dssp             BCCSSSSEETTEECTTGGGCCEEECCSSCCC-----BCCGGGSTTTCTTCCEEECCSS----------CCSSCCCGGGGC
T ss_pred             CcCHHHhccccccccccCCccEEECcCCcCC-----ccChhhhhccCCCcCEEECCCC----------CCCCcChhhhcC
Confidence            2332221        2238999999988654     4554333 377777  888877          556789999999


Q ss_pred             CCccEEEEeC------Ccc-cccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605          304 SHITRISIVG------SYL-VSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCP  368 (405)
Q Consensus       304 ~~L~~L~l~~------~~l-~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~  368 (405)
                      ++|+.|++++      |++ ..+|..       +.++++|++|++++|.. +.+|.. ..++|++|++++|+
T Consensus       536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~-------l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~  598 (636)
T 4eco_A          536 STLKGFGIRNQRDAQGNRTLREWPEG-------ITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNP  598 (636)
T ss_dssp             SSCCEEECCSCBCTTCCBCCCCCCTT-------GGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCT
T ss_pred             CCCCEEECCCCcccccCcccccChHH-------HhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCC
Confidence            9999999964      443 356655       67899999999999865 889876 33799999999996

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=9.5e-21  Score=189.73  Aligned_cols=156  Identities=15%  Similarity=0.138  Sum_probs=85.2

Q ss_pred             CCcccEEEEeccCCc------cccCCCCCCcceEEEcCcCCcccccccccc--CCCCCCCCC--eeecCCCCccEEecCC
Q 044605          222 FSSLERIVIMSCEQL------LVSCTTLPLLCELEIDGFGEVAWINRPVEA--GIFDSSNPG--PEKSRTEVLPWEIGSP  291 (405)
Q Consensus       222 ~~~L~~L~l~~c~~l------~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~--~~~~~l~~L--l~l~~~~~l~l~i~~~  291 (405)
                      +++|+.|++++|.-.      +..+..+++|++|++++|...     .++.  ..+..+++|  +++++|          
T Consensus       333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~~~l~~L~~L~Ls~N----------  397 (549)
T 2z81_A          333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-----SMQKTGEILLTLKNLTSLDISRN----------  397 (549)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-----CHHHHHHHGGGCTTCCEEECTTC----------
T ss_pred             CccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-----ccccchhhhhcCCCCCEEECCCC----------
Confidence            566666666665422      122455666666666666433     1211  224445555  555555          


Q ss_pred             CCcccccccCCCCCccEEEEeCCcccccccCCCCCccc-----------CCCCCCcCEEeeecCCCCcccCCCCCcCCcc
Q 044605          292 DQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSF-----------VRNLTSLERLELSRCPILKSFPENGLLPSVV  360 (405)
Q Consensus       292 ~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-----------l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~  360 (405)
                      +++.+|..+..+++|+.|++++|.++.+|......+..           ..++++|++|++++| .++.+|....+++|+
T Consensus       398 ~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~  476 (549)
T 2z81_A          398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLL  476 (549)
T ss_dssp             CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCC
T ss_pred             CCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCC
Confidence            45566666667777777777776666555431111100           135667777777775 455666555556777


Q ss_pred             EEeecCCcchHHHhhcCcccccccccccCeeEecceEe
Q 044605          361 YLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLV  398 (405)
Q Consensus       361 ~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~  398 (405)
                      +|+++++. ++.    ...+.+....+++.+.+.++.+
T Consensus       477 ~L~Ls~N~-l~~----~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          477 VMKISRNQ-LKS----VPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             EEECCSSC-CCC----CCTTGGGGCTTCCEEECCSSCB
T ss_pred             EEecCCCc-cCC----cCHHHHhcCcccCEEEecCCCc
Confidence            77777762 211    1122244566677777766655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.83  E-value=6.6e-20  Score=182.45  Aligned_cols=211  Identities=17%  Similarity=0.180  Sum_probs=142.2

Q ss_pred             CccEEEEEeeCCC-CCCcccCC---CCCCCccEEEEEcCCCCCcCCC--CCCC---CCccEEeecCCCCCeeeCCCCCCC
Q 044605          124 GLKELKVQNYGGT-KFPAWLGQ---SSFENLVVLRFRNCNQCTSLPS--VGHL---PLLKNLVIKGMGRMAKAGTTGGDQ  194 (405)
Q Consensus       124 ~L~~L~l~~~~~~-~lp~~~~~---~~l~~L~~L~l~~~~~~~~l~~--l~~l---~~L~~L~l~~~~~l~~~~~~~~~~  194 (405)
                      +|+.|++.++... .+|.++..   ..+++|+.++++++..  .+|.  +..+   ++|+.|++.++. +..+..     
T Consensus       248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-----  319 (520)
T 2z7x_B          248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC-----  319 (520)
T ss_dssp             SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC-----
T ss_pred             cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-cccccc-----
Confidence            4444444444322 44554410   1455556666655542  3331  1111   346666666553 221110     


Q ss_pred             CCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccCC-----ccccCCCCCCcceEEEcCcCCcccccccccc
Q 044605          195 QAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCEQ-----LLVSCTTLPLLCELEIDGFGEVAWINRPVEA  266 (405)
Q Consensus       195 ~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~~-----l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~  266 (405)
                        ...+++|++|+++++ .+.+.+|.   .+++|+.|++++|.-     ++..+..+++|++|++++|....    .++.
T Consensus       320 --~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~----~l~~  392 (520)
T 2z7x_B          320 --PSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY----DEKK  392 (520)
T ss_dssp             --CSSCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC----CGGG
T ss_pred             --hhhCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc----cccc
Confidence              135899999999986 45544553   688999999998752     24568889999999999997764    4777


Q ss_pred             CCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecC
Q 044605          267 GIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRC  344 (405)
Q Consensus       267 ~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c  344 (405)
                      ..+..++.|  +++++|...         +.+|..+.  ++|+.|++++|+++.+|..       +.++++|++|++++|
T Consensus       393 ~~~~~l~~L~~L~Ls~N~l~---------~~~~~~l~--~~L~~L~Ls~N~l~~ip~~-------~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          393 GDCSWTKSLLSLNMSSNILT---------DTIFRCLP--PRIKVLDLHSNKIKSIPKQ-------VVKLEALQELNVASN  454 (520)
T ss_dssp             CSCCCCTTCCEEECCSSCCC---------GGGGGSCC--TTCCEEECCSSCCCCCCGG-------GGGCTTCCEEECCSS
T ss_pred             chhccCccCCEEECcCCCCC---------cchhhhhc--ccCCEEECCCCcccccchh-------hhcCCCCCEEECCCC
Confidence            778888888  888888332         24444433  7999999999999999876       568999999999997


Q ss_pred             CCCcccCCC--CCcCCccEEeecCCc
Q 044605          345 PILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       345 ~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                       .++.+|..  ..+++|++|+++++|
T Consensus       455 -~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          455 -QLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -cCCccCHHHhccCCcccEEECcCCC
Confidence             56788864  445799999999876

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=1.8e-20  Score=190.05  Aligned_cols=226  Identities=13%  Similarity=0.080  Sum_probs=152.1

Q ss_pred             CCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcc
Q 044605          146 SFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSL  225 (405)
Q Consensus       146 ~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L  225 (405)
                      .+++|+.|+++++. +..+|.+..+++|++|++.+|.. ..++.       . .+++|++|+++++......--..+++|
T Consensus       283 ~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-------~-~l~~L~~L~l~~n~~~~~~~~~~l~~L  352 (606)
T 3vq2_A          283 CLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQFPT-------L-DLPFLKSLTLTMNKGSISFKKVALPSL  352 (606)
T ss_dssp             GGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSCCC-------C-CCSSCCEEEEESCSSCEECCCCCCTTC
T ss_pred             cCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-ccccc-------C-CCCccceeeccCCcCccchhhccCCCC
Confidence            35677777777776 56677777788888888887754 54543       2 588888888888755442212368889


Q ss_pred             cEEEEeccCC--c---cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCcc-------------
Q 044605          226 ERIVIMSCEQ--L---LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLP-------------  285 (405)
Q Consensus       226 ~~L~l~~c~~--l---~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~-------------  285 (405)
                      +.|++++|.-  .   +..+..+++|++|++++|...     .++ ..+..+++|  +++++|....             
T Consensus       353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  426 (606)
T 3vq2_A          353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-----IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL  426 (606)
T ss_dssp             CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-----EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred             CEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-----cch-hhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence            9999887652  2   455667889999999988644     344 567777788  7777663221             


Q ss_pred             --EEecCCCCcc-cccccCCCCCccEEEEeCCcccc--cccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCc
Q 044605          286 --WEIGSPDQES-LPEGLHKLSHITRISIVGSYLVS--FPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSV  359 (405)
Q Consensus       286 --l~i~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L  359 (405)
                        +.++.+.+.. .|..+.++++|+.|++++|.++.  +|..       +.++++|++|++++|...+..|.. ..+++|
T Consensus       427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-------FANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-------CTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh-------hccCCCCCEEECCCCcCCccChhhhcccccC
Confidence              4444444443 45567777788888887777765  4443       577888999999887544443443 556788


Q ss_pred             cEEeecCCcchHHHhhcCcccccccccccCeeEecceEee
Q 044605          360 VYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF  399 (405)
Q Consensus       360 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~  399 (405)
                      ++|++++|. +..    .....+..+.+++.+.+.++++.
T Consensus       500 ~~L~Ls~N~-l~~----~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          500 QLLNMSHNN-LLF----LDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CEEECCSSC-CSC----EEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CEEECCCCc-CCC----cCHHHccCCCcCCEEECCCCcCc
Confidence            999998884 211    11234566788888888888765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.82  E-value=7.7e-19  Score=171.66  Aligned_cols=183  Identities=19%  Similarity=0.091  Sum_probs=95.2

Q ss_pred             hheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccc
Q 044605           23 EIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTS  102 (405)
Q Consensus        23 ~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l  102 (405)
                      ..+++|++||+++|.++.+| +++++++|++|++....-   ..+ .++.+.+|+ .|.+.... +...           
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l---~~~-~~~~l~~L~-~L~Ls~N~-l~~~-----------  100 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNI---TTL-DLSQNTNLT-YLACDSNK-LTNL-----------  100 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCC---SCC-CCTTCTTCS-EEECCSSC-CSCC-----------
T ss_pred             hHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcC---CeE-ccccCCCCC-EEECcCCC-Ccee-----------
Confidence            34678999999999999887 789999999997543322   222 266666676 77765422 1111           


Q ss_pred             cCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCC
Q 044605          103 SDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMG  182 (405)
Q Consensus       103 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~  182 (405)
                                     .+..+++|+.|++.++....+|  +.  .+++|+.|++++|. ++.+ +++.+++|++|++.++.
T Consensus       101 ---------------~~~~l~~L~~L~L~~N~l~~l~--~~--~l~~L~~L~l~~N~-l~~l-~l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          101 ---------------DVTPLTKLTYLNCDTNKLTKLD--VS--QNPLLTYLNCARNT-LTEI-DVSHNTQLTELDCHLNK  159 (457)
T ss_dssp             ---------------CCTTCTTCCEEECCSSCCSCCC--CT--TCTTCCEEECTTSC-CSCC-CCTTCTTCCEEECTTCS
T ss_pred             ---------------ecCCCCcCCEEECCCCcCCeec--CC--CCCcCCEEECCCCc-ccee-ccccCCcCCEEECCCCC
Confidence                           1334555566666555444433  22  45556666665554 3333 25555555555555554


Q ss_pred             CCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC-CCCCcccEEEEeccCCccccCCCCCCcceEEEcCc
Q 044605          183 RMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP-QHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGF  254 (405)
Q Consensus       183 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~-~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~  254 (405)
                      .+..++        ...+++|++|+++++ .+++ +| ..+++|+.|+++++.--...+..+++|+.|++++|
T Consensus       160 ~~~~~~--------~~~l~~L~~L~ls~n-~l~~-l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          160 KITKLD--------VTPQTQLTTLDCSFN-KITE-LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSN  222 (457)
T ss_dssp             CCCCCC--------CTTCTTCCEEECCSS-CCCC-CCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSS
T ss_pred             cccccc--------cccCCcCCEEECCCC-ccce-eccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCC
Confidence            333321        112445555555443 2332 22 23444455544443311112344444444444444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=3.4e-19  Score=177.27  Aligned_cols=67  Identities=18%  Similarity=0.049  Sum_probs=44.5

Q ss_pred             CcccccCchhhheeeEEEEEccCCCCccCc-cccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605           13 RMETINGDFTEIFVIYLILVGDLTESKEMP-LRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG   84 (405)
Q Consensus        13 ~l~~l~~~~~~~~~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~   84 (405)
                      .+..+|..++   +++++||+++|.++.+| ..++++++|++|++....- .......++.+.+|+ +|++..
T Consensus        11 ~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~-~L~Ls~   78 (520)
T 2z7x_B           11 GLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELE-YLDLSH   78 (520)
T ss_dssp             CCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC-CEEEGGGGTTCTTCC-EEECCS
T ss_pred             Cccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCcc-CCcChHHhhcccCCC-EEecCC
Confidence            3556776654   68889999999888776 4688889998887533221 111234566677777 777654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.82  E-value=3.1e-19  Score=175.69  Aligned_cols=276  Identities=20%  Similarity=0.200  Sum_probs=202.8

Q ss_pred             cccccCchhhheeeEEEEEccCCCCccC-ccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChh
Q 044605           14 METINGDFTEIFVIYLILVGDLTESKEM-PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAE   92 (405)
Q Consensus        14 l~~l~~~~~~~~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~   92 (405)
                      +..++...+..+++|++|+|++|.++.+ |..|+++.+|++|++....-. ......+..+.+|+ .|.+....- ... 
T Consensus        44 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~Ls~n~i-~~~-  119 (477)
T 2id5_A           44 IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLT-KLDISENKI-VIL-  119 (477)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCC-EEECTTSCC-CEE-
T ss_pred             cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCC-EEECCCCcc-ccC-
Confidence            4556555666789999999999999977 677999999999985432211 11222355666676 777754221 100 


Q ss_pred             hhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCCC--CCC
Q 044605           93 DAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLPS--VGH  169 (405)
Q Consensus        93 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~  169 (405)
                                            ....+..+++|+.|++.++....+ |..+.  .+++|+.|++++|. ++.++.  +..
T Consensus       120 ----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~l~~  174 (477)
T 2id5_A          120 ----------------------LDYMFQDLYNLKSLEVGDNDLVYISHRAFS--GLNSLEQLTLEKCN-LTSIPTEALSH  174 (477)
T ss_dssp             ----------------------CTTTTTTCTTCCEEEECCTTCCEECTTSST--TCTTCCEEEEESCC-CSSCCHHHHTT
T ss_pred             ----------------------ChhHccccccCCEEECCCCccceeChhhcc--CCCCCCEEECCCCc-CcccChhHhcc
Confidence                                  122356788999999998876544 33454  78999999999987 666664  788


Q ss_pred             CCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC--Ccc-ccCCCC
Q 044605          170 LPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QLL-VSCTTL  243 (405)
Q Consensus       170 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~-~~l~~l  243 (405)
                      +++|+.|++.++. +..++.     .....+++|++|+++++..+. .++.   ...+|+.|++++|.  .++ ..+..+
T Consensus       175 l~~L~~L~l~~n~-i~~~~~-----~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  247 (477)
T 2id5_A          175 LHGLIVLRLRHLN-INAIRD-----YSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL  247 (477)
T ss_dssp             CTTCCEEEEESCC-CCEECT-----TCSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred             cCCCcEEeCCCCc-CcEeCh-----hhcccCcccceeeCCCCcccc-ccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence            9999999999875 444433     122348999999999987666 3443   34589999999875  333 457789


Q ss_pred             CCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccc
Q 044605          244 PLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFP  320 (405)
Q Consensus       244 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~  320 (405)
                      ++|+.|++++|...     .++...|..+.+|  ++++++          .++.+ |..+..+++|+.|++++|.++.++
T Consensus       248 ~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  312 (477)
T 2id5_A          248 VYLRFLNLSYNPIS-----TIEGSMLHELLRLQEIQLVGG----------QLAVVEPYAFRGLNYLRVLNVSGNQLTTLE  312 (477)
T ss_dssp             TTCCEEECCSSCCC-----EECTTSCTTCTTCCEEECCSS----------CCSEECTTTBTTCTTCCEEECCSSCCSCCC
T ss_pred             cccCeeECCCCcCC-----ccChhhccccccCCEEECCCC----------ccceECHHHhcCcccCCEEECCCCcCceeC
Confidence            99999999998754     5666778888888  888887          33444 668889999999999999999988


Q ss_pred             cCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          321 KGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       321 ~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                      ...|      .++++|++|++++|+.
T Consensus       313 ~~~~------~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          313 ESVF------HSVGNLETLILDSNPL  332 (477)
T ss_dssp             GGGB------SCGGGCCEEECCSSCE
T ss_pred             HhHc------CCCcccCEEEccCCCc
Confidence            7654      7788999999998763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.82  E-value=2.5e-19  Score=175.89  Aligned_cols=296  Identities=16%  Similarity=0.183  Sum_probs=205.0

Q ss_pred             hhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccc
Q 044605           22 TEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTT  101 (405)
Q Consensus        22 ~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~  101 (405)
                      +..+++|++|++++|.++.+|. ++++++|++|++...   ....+..+..+.+|+ .|.+.... +....  ....+..
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n---~l~~~~~~~~l~~L~-~L~l~~n~-l~~~~--~~~~l~~  157 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN---QITDIDPLKNLTNLN-RLELSSNT-ISDIS--ALSGLTS  157 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS---CCCCCGGGTTCTTCS-EEEEEEEE-ECCCG--GGTTCTT
T ss_pred             hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC---CCCCChHHcCCCCCC-EEECCCCc-cCCCh--hhccCCc
Confidence            3457899999999999998887 999999999975433   222334466777777 77775432 11111  1222222


Q ss_pred             ccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCC
Q 044605          102 SSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGM  181 (405)
Q Consensus       102 l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~  181 (405)
                      ++....... . .....+..+++|+.|++.++....++. +.  .+++|+.|++++|. +..+++++.+++|++|++.++
T Consensus       158 L~~L~l~~~-~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n  231 (466)
T 1o6v_A          158 LQQLSFGNQ-V-TDLKPLANLTTLERLDISSNKVSDISV-LA--KLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGN  231 (466)
T ss_dssp             CSEEEEEES-C-CCCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSS
T ss_pred             ccEeecCCc-c-cCchhhccCCCCCEEECcCCcCCCChh-hc--cCCCCCEEEecCCc-ccccccccccCCCCEEECCCC
Confidence            222100000 0 011236678899999999988766653 44  68999999999987 666666888999999999886


Q ss_pred             CCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC-CCCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCcc
Q 044605          182 GRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP-QHFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVA  258 (405)
Q Consensus       182 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~-~~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~  258 (405)
                      . +..++.       ...+++|++|+++++ .+.+..+ ..+++|+.|++++|.  .++. +..+++|+.|++++|....
T Consensus       232 ~-l~~~~~-------l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~  301 (466)
T 1o6v_A          232 Q-LKDIGT-------LASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED  301 (466)
T ss_dssp             C-CCCCGG-------GGGCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC
T ss_pred             C-cccchh-------hhcCCCCCEEECCCC-ccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC
Confidence            4 444433       334899999999986 4443222 368999999999875  3333 7789999999999986553


Q ss_pred             ccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCc
Q 044605          259 WINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSL  336 (405)
Q Consensus       259 ~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L  336 (405)
                           ++.  +..+++|  +++++|          .++.++. +..+++|+.|++++|.++.++.        +.++++|
T Consensus       302 -----~~~--~~~l~~L~~L~L~~n----------~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--------l~~l~~L  355 (466)
T 1o6v_A          302 -----ISP--ISNLKNLTYLTLYFN----------NISDISP-VSSLTKLQRLFFYNNKVSDVSS--------LANLTNI  355 (466)
T ss_dssp             -----CGG--GGGCTTCSEEECCSS----------CCSCCGG-GGGCTTCCEEECCSSCCCCCGG--------GTTCTTC
T ss_pred             -----chh--hcCCCCCCEEECcCC----------cCCCchh-hccCccCCEeECCCCccCCchh--------hccCCCC
Confidence                 222  5566677  788877          3344443 6789999999999988887742        5788999


Q ss_pred             CEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605          337 ERLELSRCPILKSFPENGLLPSVVYLSIYLCP  368 (405)
Q Consensus       337 ~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~  368 (405)
                      ++|++++|......| ...+++|++|++++|+
T Consensus       356 ~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          356 NWLSAGHNQISDLTP-LANLTRITQLGLNDQA  386 (466)
T ss_dssp             CEEECCSSCCCBCGG-GTTCTTCCEEECCCEE
T ss_pred             CEEeCCCCccCccch-hhcCCCCCEEeccCCc
Confidence            999999986544444 4555789999999884

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.82  E-value=2.1e-19  Score=179.89  Aligned_cols=67  Identities=13%  Similarity=0.027  Sum_probs=45.8

Q ss_pred             CcccccCchhhheeeEEEEEccCCCCccC-ccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605           13 RMETINGDFTEIFVIYLILVGDLTESKEM-PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG   84 (405)
Q Consensus        13 ~l~~l~~~~~~~~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~   84 (405)
                      .+..+|.+++   +.+++||+++|.++.+ |..++++++|++|++....- .......+..+.+|+ +|++..
T Consensus        16 ~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~-~L~Ls~   83 (549)
T 2z81_A           16 SFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLE-HLDLSD   83 (549)
T ss_dssp             CCSSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCC-EEECTT
T ss_pred             ccccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCc-CccChhhccccccCC-EEECCC
Confidence            4667777654   6889999999999876 45699999999997533221 112224466677777 777765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.81  E-value=4.2e-19  Score=170.20  Aligned_cols=302  Identities=13%  Similarity=0.042  Sum_probs=216.7

Q ss_pred             eeeEEEEEccCCCCccCccc-cCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccccc
Q 044605           25 FVIYLILVGDLTESKEMPLR-IGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSS  103 (405)
Q Consensus        25 ~~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~  103 (405)
                      +.++++|+++++.++.+|.. ++++++|++|++....- .......+..+.+|+ .|.+.... +...            
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~-~L~L~~n~-l~~~------------  108 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQ-KLYMGFNA-IRYL------------  108 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCC-EEECCSSC-CCCC------------
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcC-EEECCCCC-CCcC------------
Confidence            57899999999999999987 68899999997532221 111223456666676 77775422 1110            


Q ss_pred             CChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCC
Q 044605          104 DSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGM  181 (405)
Q Consensus       104 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~  181 (405)
                                 ....+..+++|+.|++.++....+|..+. ..+++|+.|++++|. +..++.  ++.+++|++|++.++
T Consensus       109 -----------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          109 -----------PPHVFQNVPLLTVLVLERNDLSSLPRGIF-HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             -----------CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS
T ss_pred             -----------CHHHhcCCCCCCEEECCCCccCcCCHHHh-cCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC
Confidence                       12235668899999999998888887642 268999999999987 555543  888999999999886


Q ss_pred             CCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccc
Q 044605          182 GRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWIN  261 (405)
Q Consensus       182 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~  261 (405)
                      . +..++        ...+++|+.|+++++ .+.+ ++ ..++|+.|+++++.--.......++|+.|++++|....   
T Consensus       176 ~-l~~~~--------~~~l~~L~~L~l~~n-~l~~-~~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~---  240 (390)
T 3o6n_A          176 R-LTHVD--------LSLIPSLFHANVSYN-LLST-LA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---  240 (390)
T ss_dssp             C-CSBCC--------GGGCTTCSEEECCSS-CCSE-EE-CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC---
T ss_pred             c-CCccc--------cccccccceeecccc-cccc-cC-CCCcceEEECCCCeeeeccccccccccEEECCCCCCcc---
Confidence            4 33332        334899999999885 3442 22 45689999998875321222346899999999986553   


Q ss_pred             cccccCCCCCCCCC--eeecCCCCccEEecCCCCcc-cccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCE
Q 044605          262 RPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQES-LPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLER  338 (405)
Q Consensus       262 ~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~  338 (405)
                        .  ..+..+++|  ++++++          .++. .|..+..+++|+.|++++|+++.+|..       ...+++|++
T Consensus       241 --~--~~l~~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~l~~L~~  299 (390)
T 3o6n_A          241 --T--AWLLNYPGLVEVDLSYN----------ELEKIMYHPFVKMQRLERLYISNNRLVALNLY-------GQPIPTLKV  299 (390)
T ss_dssp             --C--GGGGGCTTCSEEECCSS----------CCCEEESGGGTTCSSCCEEECCSSCCCEEECS-------SSCCTTCCE
T ss_pred             --c--HHHcCCCCccEEECCCC----------cCCCcChhHccccccCCEEECCCCcCcccCcc-------cCCCCCCCE
Confidence              1  356677777  888887          3344 467889999999999999999998865       467899999


Q ss_pred             EeeecCCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEee
Q 044605          339 LELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF  399 (405)
Q Consensus       339 L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~  399 (405)
                      |++++| .++.+|.. ..+++|++|++++|+--        .........++.+.+.++.+.
T Consensus       300 L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~--------~~~~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          300 LDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV--------TLKLSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             EECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC--------CCCCCTTCCCSEEECCSSCEE
T ss_pred             EECCCC-cceecCccccccCcCCEEECCCCccc--------eeCchhhccCCEEEcCCCCcc
Confidence            999998 46677655 44579999999998521        223556678888888887664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=4.2e-19  Score=166.44  Aligned_cols=279  Identities=14%  Similarity=0.147  Sum_probs=152.6

Q ss_pred             hccCcccccCchhhhe-----eeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605           10 RLRRMETINGDFTEIF-----VIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG   84 (405)
Q Consensus        10 ~lr~l~~l~~~~~~~~-----~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~   84 (405)
                      ....+..+|..+...+     ..+++++++++.++.+|..+.  .+|++|++....- .......+..+.+|+ .|.+..
T Consensus        12 ~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i-~~~~~~~~~~l~~L~-~L~L~~   87 (332)
T 2ft3_A           12 GIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDI-SELRKDDFKGLQHLY-ALVLVN   87 (332)
T ss_dssp             -------------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCC-CEECTTTTTTCTTCC-EEECCS
T ss_pred             CCCccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcC-CccCHhHhhCCCCCc-EEECCC
Confidence            3344556666555443     378999999999999998875  6788886432211 111223456666666 666654


Q ss_pred             cccCCChhhhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcC
Q 044605           85 LENVNVAEDAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSL  164 (405)
Q Consensus        85 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l  164 (405)
                      .. +..                       .....+..+++|+.|++.++....+|..+.    ++|++|++++|. ++.+
T Consensus        88 n~-l~~-----------------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~----~~L~~L~l~~n~-i~~~  138 (332)
T 2ft3_A           88 NK-ISK-----------------------IHEKAFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNR-IRKV  138 (332)
T ss_dssp             SC-CCE-----------------------ECGGGSTTCTTCCEEECCSSCCCSCCSSCC----TTCCEEECCSSC-CCCC
T ss_pred             Cc-cCc-----------------------cCHhHhhCcCCCCEEECCCCcCCccCcccc----ccCCEEECCCCc-cCcc
Confidence            21 110                       012346667888888888887777776443    788888888877 5666


Q ss_pred             CC--CCCCCCccEEeecCCCCCe--eeCCCCCCCCCCCCCCcccEEeeccCccccccCCC-CCCcccEEEEeccC--Cc-
Q 044605          165 PS--VGHLPLLKNLVIKGMGRMA--KAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ-HFSSLERIVIMSCE--QL-  236 (405)
Q Consensus       165 ~~--l~~l~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c~--~l-  236 (405)
                      +.  +..+++|++|++.++.-..  ..+.      ....+ +|++|+++++ .++ .+|. .+++|++|+++++.  .+ 
T Consensus       139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------~~~~l-~L~~L~l~~n-~l~-~l~~~~~~~L~~L~l~~n~i~~~~  209 (332)
T 2ft3_A          139 PKGVFSGLRNMNCIEMGGNPLENSGFEPG------AFDGL-KLNYLRISEA-KLT-GIPKDLPETLNELHLDHNKIQAIE  209 (332)
T ss_dssp             CSGGGSSCSSCCEEECCSCCCBGGGSCTT------SSCSC-CCSCCBCCSS-BCS-SCCSSSCSSCSCCBCCSSCCCCCC
T ss_pred             CHhHhCCCccCCEEECCCCccccCCCCcc------cccCC-ccCEEECcCC-CCC-ccCccccCCCCEEECCCCcCCccC
Confidence            54  7788888888888764211  1111      11123 7888888775 455 2443 34667777777653  22 


Q ss_pred             cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCC
Q 044605          237 LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGS  314 (405)
Q Consensus       237 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~  314 (405)
                      +..+..+++|++|++++|...     .++...+..+++|  +++++|          .++.+|.++..+++|+.|++++|
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N----------~l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIR-----MIENGSLSFLPTLRELHLDNN----------KLSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCC-----CCCTTGGGGCTTCCEEECCSS----------CCCBCCTTGGGCTTCCEEECCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCC-----cCChhHhhCCCCCCEEECCCC----------cCeecChhhhcCccCCEEECCCC
Confidence            345666777777777766443     2333344444444  444444          33445555555555555555555


Q ss_pred             cccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          315 YLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       315 ~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      .++.++...|.........++|+.|++++|+
T Consensus       275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             CCCccChhHccccccccccccccceEeecCc
Confidence            5555554433211101113445555555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=2.2e-18  Score=177.03  Aligned_cols=321  Identities=13%  Similarity=0.060  Sum_probs=156.7

Q ss_pred             eEEEEEccCCCCccCc-cccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCC--------Chhhhhhc
Q 044605           27 IYLILVGDLTESKEMP-LRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVN--------VAEDAKEG   97 (405)
Q Consensus        27 ~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~--------~~~~~~~~   97 (405)
                      +|++|++++|.++.++ ..++++.+|++|++....- .......+..+.+|+ .+.+.......        ...+....
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~~~~~~~~~~~~lp~i~~~~~~  326 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI-QHLFSHSLHGLFNVR-YLNLKRSFTKQSISLASLPKIDDFSFQ  326 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB-SEECTTTTTTCTTCC-EEECTTCBCCC------CCEECTTTTT
T ss_pred             CCCEEECCCCCcCccCcccccCcccccEeeCCCCcc-CccChhhhcCCCCcc-EEeccchhhhcccccccccccChhhcc
Confidence            4889999988888765 5588888888887532211 112223455555565 66654311000        00000111


Q ss_pred             ccccccCCh-hhHHHHHHHhccCCCCCCccEEEEEeeC--CCCCCcccC-CCCCCCccEEEEEcCCCCCcC-C-CCCCCC
Q 044605           98 NRTTSSDSR-EVAEIQTRVLEMLKPHYGLKELKVQNYG--GTKFPAWLG-QSSFENLVVLRFRNCNQCTSL-P-SVGHLP  171 (405)
Q Consensus        98 ~l~~l~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~lp~~~~-~~~l~~L~~L~l~~~~~~~~l-~-~l~~l~  171 (405)
                      .+..+.... ..+.........+..+++|+.|++.++.  ...++.... ....++|+.|++++|. +..+ | .+..++
T Consensus       327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~  405 (680)
T 1ziw_A          327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLG  405 (680)
T ss_dssp             TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEECTTTTTTCT
T ss_pred             cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeEChhhhhCCC
Confidence            111111100 0000000111223445555555555442  111111110 0012456666666655 3333 2 366777


Q ss_pred             CccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC-----CccccCCCC
Q 044605          172 LLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE-----QLLVSCTTL  243 (405)
Q Consensus       172 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~-----~l~~~l~~l  243 (405)
                      +|++|+++++.-...++.     .....+++|++|+++++. +.+..+.   .+++|+.|++.++.     ..|..+..+
T Consensus       406 ~L~~L~L~~N~l~~~~~~-----~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l  479 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTG-----QEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL  479 (680)
T ss_dssp             TCCEEECCSSCCEEECCS-----GGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred             CCCEEeCCCCcCccccCc-----ccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence            788888777653333432     011236777777777753 3322221   46677777776653     235666677


Q ss_pred             CCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCc---------------------c-EEecCCCCccccc-
Q 044605          244 PLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVL---------------------P-WEIGSPDQESLPE-  298 (405)
Q Consensus       244 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l---------------------~-l~i~~~~l~~lp~-  298 (405)
                      ++|+.|++++|...     .++.+.+..+++|  ++++++...                     + +.++.+.++.+|. 
T Consensus       480 ~~L~~L~Ls~N~l~-----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~  554 (680)
T 1ziw_A          480 RNLTILDLSNNNIA-----NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE  554 (680)
T ss_dssp             TTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCEEECCCCCCC-----cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH
Confidence            77777777776543     4555566666666  666655211                     0 1222334444443 


Q ss_pred             ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--C-CcCCccEEeecCCc
Q 044605          299 GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--G-LLPSVVYLSIYLCP  368 (405)
Q Consensus       299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~-~~~~L~~L~i~~c~  368 (405)
                      .+.++++|+.|++++|+++.+|...|      .++++|++|++++| .++.++..  . .+++|++|+++++|
T Consensus       555 ~~~~l~~L~~L~Ls~N~l~~l~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          555 VFKDLFELKIIDLGLNNLNTLPASVF------NNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             HcccccCcceeECCCCCCCcCCHhHh------CCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence            24455555555555555555554432      44555555555554 33444332  1 23455666665554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=1.3e-18  Score=182.93  Aligned_cols=353  Identities=12%  Similarity=0.042  Sum_probs=172.3

Q ss_pred             CcccccCchhhheeeEEEEEccCCCCccC-ccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCCh
Q 044605           13 RMETINGDFTEIFVIYLILVGDLTESKEM-PLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVA   91 (405)
Q Consensus        13 ~l~~l~~~~~~~~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~   91 (405)
                      .+..||.    ..+.+++|||++|.++.+ |..++++++|++|++.............+.++.+|+ .|.+.... +...
T Consensus        15 ~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~-~L~Ls~N~-l~~~   88 (844)
T 3j0a_A           15 NLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR-ILDLGSSK-IYFL   88 (844)
T ss_dssp             CSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC-EEECTTCC-CCEE
T ss_pred             CCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC-EEECCCCc-Cccc
Confidence            4667776    357899999999999876 567999999999985433221111244567777777 77776422 1111


Q ss_pred             hhhhhcccccccCCh-hhHHHHHHHhcc--CCCCCCccEEEEEeeCCCCC--CcccCCCCCCCccEEEEEcCCCCCcCC-
Q 044605           92 EDAKEGNRTTSSDSR-EVAEIQTRVLEM--LKPHYGLKELKVQNYGGTKF--PAWLGQSSFENLVVLRFRNCNQCTSLP-  165 (405)
Q Consensus        92 ~~~~~~~l~~l~~~~-~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~l--p~~~~~~~l~~L~~L~l~~~~~~~~l~-  165 (405)
                      .......+..++... ..+......+..  +..+++|+.|++.+|....+  +..+.  .+++|+.|++++|......+ 
T Consensus        89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A           89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG--KLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG--TCSSCCEEEEESSCCCCCCSG
T ss_pred             CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh--hCCCCCEEECCCCcCCeeCHH
Confidence            111112222222200 000000001111  33445555555555443322  12233  44555555555544111111 


Q ss_pred             CCCCC--CCccEEeecCCCCCeeeCC-CCCCCCCCCCCCcccEEeeccCccccccCCC----------------------
Q 044605          166 SVGHL--PLLKNLVIKGMGRMAKAGT-TGGDQQAAKGFPCLRELSIINCSKLKGRLPQ----------------------  220 (405)
Q Consensus       166 ~l~~l--~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~----------------------  220 (405)
                      .++.+  ++|+.|++.++.-....+. ++. ......-.+|++|+++++. +.+..+.                      
T Consensus       167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~  244 (844)
T 3j0a_A          167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMG  244 (844)
T ss_dssp             GGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred             HcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceeccccccc
Confidence            12222  3444444443322111111 110 0000001137777776651 1111110                      


Q ss_pred             -------------------CCCcccEEEEeccCCc---cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--e
Q 044605          221 -------------------HFSSLERIVIMSCEQL---LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--P  276 (405)
Q Consensus       221 -------------------~~~~L~~L~l~~c~~l---~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l  276 (405)
                                         ..++|+.|+++++.-.   +..|..+++|+.|++++|...     .++...|..+++|  |
T Consensus       245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~~L~~L  319 (844)
T 3j0a_A          245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-----KIADEAFYGLDNLQVL  319 (844)
T ss_dssp             CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-----EECTTTTTTCSSCCEE
T ss_pred             ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-----CCChHHhcCCCCCCEE
Confidence                               1256677777665321   445666777777777776544     3444566666666  6


Q ss_pred             eecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCC
Q 044605          277 EKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGL  355 (405)
Q Consensus       277 ~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~  355 (405)
                      +++++          .++.+ |..+..+++|+.|++++|.++.++...|      .++++|++|++++|. ++.++.   
T Consensus       320 ~Ls~N----------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~------~~l~~L~~L~Ls~N~-l~~i~~---  379 (844)
T 3j0a_A          320 NLSYN----------LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF------KFLEKLQTLDLRDNA-LTTIHF---  379 (844)
T ss_dssp             EEESC----------CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS------CSCCCCCEEEEETCC-SCCCSS---
T ss_pred             ECCCC----------CCCccCHHHhcCCCCCCEEECCCCCCCccChhhh------cCCCCCCEEECCCCC-CCcccC---
Confidence            66666          33333 4566677777777777777776665543      556667777776653 344432   


Q ss_pred             cCCccEEeecCCcc--hHHHh-------------hc-CcccccccccccCeeEecceEeeC
Q 044605          356 LPSVVYLSIYLCPD--LEEKC-------------KK-DEREYCHLVADIPFVQLNHKLVFD  400 (405)
Q Consensus       356 ~~~L~~L~i~~c~~--l~~~~-------------~~-~~~~~~~~i~~i~~~~~~~~~~~~  400 (405)
                      +++|+.|+++++.-  ++...             .. +.......+.+++.+.+.++.+..
T Consensus       380 ~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~  440 (844)
T 3j0a_A          380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS  440 (844)
T ss_dssp             CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred             CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence            34555555555421  10000             00 000011256788888888887763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=1.5e-18  Score=178.19  Aligned_cols=63  Identities=16%  Similarity=0.159  Sum_probs=32.1

Q ss_pred             CCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEee
Q 044605          331 RNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF  399 (405)
Q Consensus       331 ~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~  399 (405)
                      .++++|++|++++| .++.+|..  ..+++|++|+++++. ++.    -....+..+..++.+.+.++.+.
T Consensus       533 ~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~----l~~~~~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          533 KGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNN-LNT----LPASVFNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCC----CCTTTTTTCTTCCEEECTTSCCC
T ss_pred             cCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCC-CCc----CCHhHhCCCCCCCEEECCCCcCC
Confidence            45556666666554 34455543  334566666665541 111    11122345566777777766554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=1.2e-18  Score=183.09  Aligned_cols=35  Identities=17%  Similarity=-0.065  Sum_probs=20.2

Q ss_pred             hhheeeEEEEEccCCCCccC-ccccCCCccCcccCc
Q 044605           22 TEIFVIYLILVGDLTESKEM-PLRIGKLTSLRTLTK   56 (405)
Q Consensus        22 ~~~~~~L~~L~L~~~~i~~l-P~~i~~L~~L~~L~~   56 (405)
                      +..+++|++|+|++|.++.+ |..|+++++|++|++
T Consensus        69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  104 (844)
T 3j0a_A           69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL  104 (844)
T ss_dssp             TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred             hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence            34455666666666666544 455666666666653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=2e-18  Score=173.47  Aligned_cols=66  Identities=15%  Similarity=0.038  Sum_probs=43.2

Q ss_pred             cccccCchhhheeeEEEEEccCCCCccCc-cccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605           14 METINGDFTEIFVIYLILVGDLTESKEMP-LRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG   84 (405)
Q Consensus        14 l~~l~~~~~~~~~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~   84 (405)
                      +..+|.++.   +++++||+++|.++.+| ..++++++|++|++....- .......+..+.+|+ +|++..
T Consensus        43 L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~-~L~Ls~  109 (562)
T 3a79_B           43 LTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLE-YLDVSH  109 (562)
T ss_dssp             CCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC-CEECTTTTTTCTTCC-EEECTT
T ss_pred             CccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCC-CcCCHHHhCCCCCCC-EEECCC
Confidence            455666543   68889999999988877 4688999999887533221 111234456666666 777654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=4.3e-19  Score=178.42  Aligned_cols=208  Identities=22%  Similarity=0.236  Sum_probs=127.5

Q ss_pred             ccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeee--CC-CCC-
Q 044605          117 EMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKA--GT-TGG-  192 (405)
Q Consensus       117 ~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~--~~-~~~-  192 (405)
                      ..+..+ +|+.|++.++....+|.+    .+++|+.|++++|.....++ ...+++|++|++.++.-....  +. +.. 
T Consensus       299 ~~~~~~-~L~~L~l~~n~~~~l~~~----~l~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  372 (570)
T 2z63_A          299 DFSYNF-GWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT  372 (570)
T ss_dssp             BCCSCC-CCSEEEEESCBCSSCCBC----BCSSCCEEEEESCBSCCBCC-CCBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred             hhhccC-CccEEeeccCcccccCcc----cccccCEEeCcCCccccccc-cccCCCCCEEeCcCCccCcccccccccccc
Confidence            334556 899999999887777762    56778888888776433333 366777777777765422111  11 111 


Q ss_pred             -----------C----CCCCCCCCcccEEeeccCccccccCC----CCCCcccEEEEeccCC---ccccCCCCCCcceEE
Q 044605          193 -----------D----QQAAKGFPCLRELSIINCSKLKGRLP----QHFSSLERIVIMSCEQ---LLVSCTTLPLLCELE  250 (405)
Q Consensus       193 -----------~----~~~~~~~~~L~~L~l~~~~~l~~~l~----~~~~~L~~L~l~~c~~---l~~~l~~l~~L~~L~  250 (405)
                                 .    ......+++|++|+++++. +.+..+    ..+++|+.|++++|..   .+..+..+++|++|+
T Consensus       373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  451 (570)
T 2z63_A          373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  451 (570)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             CccCEEECCCCccccccccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence                       0    0002234555555555532 222222    1456666666666542   234455566666666


Q ss_pred             EcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCc
Q 044605          251 IDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESL  327 (405)
Q Consensus       251 l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l  327 (405)
                      +++|....    ...+..+..+++|  +++++|          .++.+ |..+..+++|+.|++++|.++.++...|   
T Consensus       452 l~~n~l~~----~~~p~~~~~l~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---  514 (570)
T 2z63_A          452 MAGNSFQE----NFLPDIFTELRNLTFLDLSQC----------QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF---  514 (570)
T ss_dssp             CTTCEEGG----GEECSCCTTCTTCCEEECTTS----------CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT---
T ss_pred             CcCCcCcc----ccchhhhhcccCCCEEECCCC----------ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh---
Confidence            66664431    1122355556666  666666          44555 7788999999999999999999887654   


Q ss_pred             ccCCCCCCcCEEeeecCCCCcccC
Q 044605          328 SFVRNLTSLERLELSRCPILKSFP  351 (405)
Q Consensus       328 ~~l~~l~~L~~L~l~~c~~l~~l~  351 (405)
                         .++++|++|++++|+...+.|
T Consensus       515 ---~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          515 ---DRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             ---TTCTTCCEEECCSSCBCCCTT
T ss_pred             ---hcccCCcEEEecCCcccCCCc
Confidence               788999999999987654444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.79  E-value=1.8e-18  Score=161.83  Aligned_cols=212  Identities=20%  Similarity=0.271  Sum_probs=169.5

Q ss_pred             CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGF  200 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  200 (405)
                      ..+++.|++.++....+|..+.  .+++|+.|++++|. +..+|. ++.+++|++|++.++. +..++.      ....+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~------~l~~l  149 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAF--RLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPA------SIASL  149 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGG--GGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCG------GGGGC
T ss_pred             ccceeEEEccCCCchhcChhhh--hCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcH------HHhcC
Confidence            5789999999999889998887  79999999999988 557775 8899999999999874 446654      12348


Q ss_pred             CcccEEeeccCccccccCCC------------CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCcccccccccc
Q 044605          201 PCLRELSIINCSKLKGRLPQ------------HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEA  266 (405)
Q Consensus       201 ~~L~~L~l~~~~~l~~~l~~------------~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~  266 (405)
                      ++|++|++++|.... .+|.            .+++|+.|++++|.  .+|..+..+++|++|++++|...     .++.
T Consensus       150 ~~L~~L~L~~n~~~~-~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-----~l~~  223 (328)
T 4fcg_A          150 NRLRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-----ALGP  223 (328)
T ss_dssp             TTCCEEEEEEETTCC-CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-----CCCG
T ss_pred             cCCCEEECCCCCCcc-ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-----cCch
Confidence            999999999986655 5664            28899999999875  56778888999999999998765     3343


Q ss_pred             CCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeC-CcccccccCCCCCcccCCCCCCcCEEeeec
Q 044605          267 GIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELSR  343 (405)
Q Consensus       267 ~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~-~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~  343 (405)
                       .+..+++|  +++++|...         +.+|..+..+++|+.|++++ +.+..+|..       +.++++|++|++++
T Consensus       224 -~l~~l~~L~~L~Ls~n~~~---------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-------~~~l~~L~~L~L~~  286 (328)
T 4fcg_A          224 -AIHHLPKLEELDLRGCTAL---------RNYPPIFGGRAPLKRLILKDCSNLLTLPLD-------IHRLTQLEKLDLRG  286 (328)
T ss_dssp             -GGGGCTTCCEEECTTCTTC---------CBCCCCTTCCCCCCEEECTTCTTCCBCCTT-------GGGCTTCCEEECTT
T ss_pred             -hhccCCCCCEEECcCCcch---------hhhHHHhcCCCCCCEEECCCCCchhhcchh-------hhcCCCCCEEeCCC
Confidence             46777778  888887544         56788888999999999998 456677765       57888999999999


Q ss_pred             CCCCcccCCC-CCcCCccEEeecC
Q 044605          344 CPILKSFPEN-GLLPSVVYLSIYL  366 (405)
Q Consensus       344 c~~l~~l~~~-~~~~~L~~L~i~~  366 (405)
                      |+.++.+|.. ..+++|+.+++..
T Consensus       287 n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          287 CVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCchhhccHHHhhccCceEEeCCH
Confidence            9988888876 5566788887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=8.5e-18  Score=157.33  Aligned_cols=263  Identities=13%  Similarity=0.114  Sum_probs=148.7

Q ss_pred             eEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccccCCh
Q 044605           27 IYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDSR  106 (405)
Q Consensus        27 ~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~~~~  106 (405)
                      ++++++++++.++.+|..+.  .++++|++....- .......++.+.+|+ +|.+.... +...               
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i-~~~~~~~~~~l~~L~-~L~L~~n~-l~~~---------------   91 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKI-TEIKDGDFKNLKNLH-TLILINNK-ISKI---------------   91 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCC-CCBCTTTTTTCTTCC-EEECCSSC-CCCB---------------
T ss_pred             CCeEEEecCCCccccCccCC--CCCeEEECCCCcC-CEeChhhhccCCCCC-EEECCCCc-CCee---------------
Confidence            78899999999999988764  5777776422211 111122355566666 66664321 1100               


Q ss_pred             hhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCC
Q 044605          107 EVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRM  184 (405)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l  184 (405)
                              ....+..+++|++|++.++....+|..+.    ++|+.|++++|. ++.++.  +..+++|++|++.++...
T Consensus        92 --------~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~----~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A           92 --------SPGAFAPLVKLERLYLSKNQLKELPEKMP----KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             --------CTTTTTTCTTCCEEECCSSCCSBCCSSCC----TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             --------CHHHhcCCCCCCEEECCCCcCCccChhhc----ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCC
Confidence                    12335567778888888777666665432    678888887776 555553  677888888888765422


Q ss_pred             e--eeCCCCCCCCCCCCCCcccEEeeccCccccccCCC-CCCcccEEEEeccCC--c-cccCCCCCCcceEEEcCcCCcc
Q 044605          185 A--KAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ-HFSSLERIVIMSCEQ--L-LVSCTTLPLLCELEIDGFGEVA  258 (405)
Q Consensus       185 ~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c~~--l-~~~l~~l~~L~~L~l~~~~~l~  258 (405)
                      .  ..+.      ....+++|++|+++++ .++ .+|. .+++|+.|+++++.-  + +..+..+++|+.|++++|... 
T Consensus       159 ~~~~~~~------~~~~l~~L~~L~l~~n-~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-  229 (330)
T 1xku_A          159 SSGIENG------AFQGMKKLSYIRIADT-NIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-  229 (330)
T ss_dssp             GGGBCTT------GGGGCTTCCEEECCSS-CCC-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-
T ss_pred             ccCcChh------hccCCCCcCEEECCCC-ccc-cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-
Confidence            1  1111      1223778888888775 344 2443 346777777776542  1 455666777777777776543 


Q ss_pred             ccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCc
Q 044605          259 WINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSL  336 (405)
Q Consensus       259 ~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L  336 (405)
                          .++...+..+++|  +++++|          .++.+|.++..+++|+.|++++|.++.++...|.........++|
T Consensus       230 ----~~~~~~~~~l~~L~~L~L~~N----------~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l  295 (330)
T 1xku_A          230 ----AVDNGSLANTPHLRELHLNNN----------KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY  295 (330)
T ss_dssp             ----EECTTTGGGSTTCCEEECCSS----------CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred             ----eeChhhccCCCCCCEEECCCC----------cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence                2333344444444  555544          334555555555555555555555555554443211111123445


Q ss_pred             CEEeeecCC
Q 044605          337 ERLELSRCP  345 (405)
Q Consensus       337 ~~L~l~~c~  345 (405)
                      +.|++++|+
T Consensus       296 ~~l~l~~N~  304 (330)
T 1xku_A          296 SGVSLFSNP  304 (330)
T ss_dssp             SEEECCSSS
T ss_pred             cceEeecCc
Confidence            555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.78  E-value=9.6e-19  Score=171.02  Aligned_cols=312  Identities=14%  Similarity=0.048  Sum_probs=188.7

Q ss_pred             ccccCchhhheeeEEEEEccCCCCc-cCc-cccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCC-h
Q 044605           15 ETINGDFTEIFVIYLILVGDLTESK-EMP-LRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNV-A   91 (405)
Q Consensus        15 ~~l~~~~~~~~~~L~~L~L~~~~i~-~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~-~   91 (405)
                      ..++...+..+++|++|++++|.+. .+| ..|+++++|++|++....- .......++.+.+|+ .|.+....-... .
T Consensus        43 ~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~  120 (455)
T 3v47_A           43 AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLE-VLTLTQCNLDGAVL  120 (455)
T ss_dssp             CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTTTTCTTCC-EEECTTSCCBTHHH
T ss_pred             CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhccCcccCC-EEeCCCCCCCcccc
Confidence            3343333445667777777777765 453 4577777777776432211 111233455555565 666654321100 0


Q ss_pred             hhhhhcccccccCChh-hHHHHHHHhcc-CCCCCCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCCC--
Q 044605           92 EDAKEGNRTTSSDSRE-VAEIQTRVLEM-LKPHYGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLPS--  166 (405)
Q Consensus        92 ~~~~~~~l~~l~~~~~-~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~~--  166 (405)
                      .......+..++.... .+......... +..+++|+.|++.++..... |..+......+|+.|++++|. +..++.  
T Consensus       121 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~  199 (455)
T 3v47_A          121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYW  199 (455)
T ss_dssp             HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTC
T ss_pred             CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc-ccccchhh
Confidence            1111222222222000 00000111122 45678999999998775443 444432123677778777766 444332  


Q ss_pred             --------CCCCCCccEEeecCCCCCe----------------eeCC--------------CCC-C--CCCCCCCCcccE
Q 044605          167 --------VGHLPLLKNLVIKGMGRMA----------------KAGT--------------TGG-D--QQAAKGFPCLRE  205 (405)
Q Consensus       167 --------l~~l~~L~~L~l~~~~~l~----------------~~~~--------------~~~-~--~~~~~~~~~L~~  205 (405)
                              +..+++|++|+++++.-..                .+..              +.. .  .......++|++
T Consensus       200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  279 (455)
T 3v47_A          200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT  279 (455)
T ss_dssp             TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred             ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE
Confidence                    2345677777777653211                1100              000 0  001112368999


Q ss_pred             EeeccCccccccCCC---CCCcccEEEEeccCC--c-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--ee
Q 044605          206 LSIINCSKLKGRLPQ---HFSSLERIVIMSCEQ--L-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PE  277 (405)
Q Consensus       206 L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~~--l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~  277 (405)
                      |+++++ .+.+..|.   .+++|+.|++++|.-  + +..|..+++|++|++++|...     .++...+..+++|  ++
T Consensus       280 L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          280 CDLSKS-KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-----SIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             EECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-----EECGGGGTTCTTCCEEE
T ss_pred             EEecCc-cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-----CcChhHhcCcccCCEEE
Confidence            999986 44444453   678999999998752  2 557888999999999999664     5566678888888  89


Q ss_pred             ecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605          278 KSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP  351 (405)
Q Consensus       278 l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~  351 (405)
                      +++|          .++.+ |..+..+++|+.|++++|+++.+|...|      .++++|++|++++|+...+.|
T Consensus       354 Ls~N----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          354 LSYN----------HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF------DRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCSS----------CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCC----------cccccChhhccccccccEEECCCCccccCCHhHh------ccCCcccEEEccCCCcccCCC
Confidence            9888          34444 6688999999999999999999987654      788999999999988665555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=2.6e-18  Score=173.77  Aligned_cols=302  Identities=13%  Similarity=0.046  Sum_probs=217.8

Q ss_pred             eeeEEEEEccCCCCccCccc-cCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccccc
Q 044605           25 FVIYLILVGDLTESKEMPLR-IGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSS  103 (405)
Q Consensus        25 ~~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~  103 (405)
                      +.+++++++++|.++.+|.. ++++++|++|++....- .......++.+.+|+ .|.+.... +...            
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~-l~~~------------  114 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQ-KLYMGFNA-IRYL------------  114 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCC-EEECCSSC-CCCC------------
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC-CCCChHHhcCCCCCC-EEECCCCc-CCCC------------
Confidence            57889999999999999987 78899999997533221 112223566677777 77775432 1111            


Q ss_pred             CChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCC
Q 044605          104 DSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGM  181 (405)
Q Consensus       104 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~  181 (405)
                                 ....+..+++|+.|++.+|....+|..+. ..+++|+.|++++|. +..++  .++.+++|++|++.++
T Consensus       115 -----------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          115 -----------PPHVFQNVPLLTVLVLERNDLSSLPRGIF-HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             -----------CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS
T ss_pred             -----------CHHHHcCCCCCCEEEeeCCCCCCCCHHHh-ccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC
Confidence                       12235678899999999998888877642 268999999999987 55554  3888999999999886


Q ss_pred             CCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccc
Q 044605          182 GRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWIN  261 (405)
Q Consensus       182 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~  261 (405)
                      . +..++        ...+++|+.|+++++ .+.+ ++ ..++|+.|+++++.--...-...++|+.|++++|....   
T Consensus       182 ~-l~~~~--------~~~l~~L~~L~l~~n-~l~~-l~-~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~---  246 (597)
T 3oja_B          182 R-LTHVD--------LSLIPSLFHANVSYN-LLST-LA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD---  246 (597)
T ss_dssp             C-CSBCC--------GGGCTTCSEEECCSS-CCSE-EE-CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC---
T ss_pred             C-CCCcC--------hhhhhhhhhhhcccC-cccc-cc-CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC---
Confidence            4 33332        334899999999885 4442 22 45789999998875321111224799999999986553   


Q ss_pred             cccccCCCCCCCCC--eeecCCCCccEEecCCCCcc-cccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCE
Q 044605          262 RPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQES-LPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLER  338 (405)
Q Consensus       262 ~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~  338 (405)
                          ...+..++.|  |++++|.          ++. .|..+..+++|+.|++++|.++.+|..       ...+++|++
T Consensus       247 ----~~~l~~l~~L~~L~Ls~N~----------l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-------~~~l~~L~~  305 (597)
T 3oja_B          247 ----TAWLLNYPGLVEVDLSYNE----------LEKIMYHPFVKMQRLERLYISNNRLVALNLY-------GQPIPTLKV  305 (597)
T ss_dssp             ----CGGGGGCTTCSEEECCSSC----------CCEEESGGGTTCSSCCEEECTTSCCCEEECS-------SSCCTTCCE
T ss_pred             ----ChhhccCCCCCEEECCCCc----------cCCCCHHHhcCccCCCEEECCCCCCCCCCcc-------cccCCCCcE
Confidence                2356677778  8888873          343 467889999999999999999998866       467899999


Q ss_pred             EeeecCCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEee
Q 044605          339 LELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLVF  399 (405)
Q Consensus       339 L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~  399 (405)
                      |++++|. ++.+|.. ..+++|++|++++|+-.        +..+.....++.+.+.++.+.
T Consensus       306 L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          306 LDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV--------TLKLSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             EECCSSC-CCCCGGGHHHHTTCSEEECCSSCCC--------CCCCCTTCCCSEEECCSSCEE
T ss_pred             EECCCCC-CCccCcccccCCCCCEEECCCCCCC--------CcChhhcCCCCEEEeeCCCCC
Confidence            9999975 5677755 45679999999998621        223556678888888887664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=1.9e-17  Score=166.38  Aligned_cols=147  Identities=16%  Similarity=0.181  Sum_probs=110.4

Q ss_pred             CCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC--C---ccccCCCCCCcceEEEcCcCCccccccccccCCC
Q 044605          198 KGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--Q---LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIF  269 (405)
Q Consensus       198 ~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  269 (405)
                      ..+++|++|+++++ .+++..|.   .+++|+.|+++++.  .   ++..+..+++|+.|++++|....    .++.+.+
T Consensus       350 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~  424 (562)
T 3a79_B          350 PSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS----HAYDRTC  424 (562)
T ss_dssp             SSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS----CCSSCCC
T ss_pred             cCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC----ccChhhh
Confidence            45788899998886 44444443   67889999988764  2   23457788999999999887664    4777778


Q ss_pred             CCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCC
Q 044605          270 DSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIL  347 (405)
Q Consensus       270 ~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l  347 (405)
                      ..+++|  +++++|...         +.+|..+.  ++|+.|++++|+++.+|..       +.++++|++|++++| .+
T Consensus       425 ~~l~~L~~L~l~~n~l~---------~~~~~~l~--~~L~~L~L~~N~l~~ip~~-------~~~l~~L~~L~L~~N-~l  485 (562)
T 3a79_B          425 AWAESILVLNLSSNMLT---------GSVFRCLP--PKVKVLDLHNNRIMSIPKD-------VTHLQALQELNVASN-QL  485 (562)
T ss_dssp             CCCTTCCEEECCSSCCC---------GGGGSSCC--TTCSEEECCSSCCCCCCTT-------TTSSCCCSEEECCSS-CC
T ss_pred             cCcccCCEEECCCCCCC---------cchhhhhc--CcCCEEECCCCcCcccChh-------hcCCCCCCEEECCCC-CC
Confidence            888888  888887322         23343332  7999999999999999877       568899999999996 56


Q ss_pred             cccCCC--CCcCCccEEeecCCc
Q 044605          348 KSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       348 ~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      +.+|..  ..+++|++|+++++|
T Consensus       486 ~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          486 KSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CCCCTTSTTTCTTCCCEECCSCC
T ss_pred             CCCCHHHHhcCCCCCEEEecCCC
Confidence            788864  456799999999876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.77  E-value=2.1e-18  Score=160.36  Aligned_cols=241  Identities=15%  Similarity=0.153  Sum_probs=145.6

Q ss_pred             eeEEEEEccCCCCc---cCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccc
Q 044605           26 VIYLILVGDLTESK---EMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTS  102 (405)
Q Consensus        26 ~~L~~L~L~~~~i~---~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l  102 (405)
                      .++++|++++|.++   .+|..++++++|++|++..........+..++                               
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-------------------------------   98 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------------   98 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-------------------------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-------------------------------
Confidence            57999999999987   58999999999999975321211111222222                               


Q ss_pred             cCChhhHHHHHHHhccCCCCCCccEEEEEeeCCC-CCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCCccEEeecC
Q 044605          103 SDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGT-KFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKG  180 (405)
Q Consensus       103 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~  180 (405)
                                        .+++|++|++.++... .+|..+.  .+++|++|++++|.....+|. ++.+++|++|++.+
T Consensus        99 ------------------~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  158 (313)
T 1ogq_A           99 ------------------KLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG  158 (313)
T ss_dssp             ------------------GCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             ------------------cCCCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence                              3455666666665543 4565555  567777777777663224443 66677777777776


Q ss_pred             CCCCeeeCC-CCCCCCCCCCCC-cccEEeeccCccccccCCC---CCCcccEEEEeccC---CccccCCCCCCcceEEEc
Q 044605          181 MGRMAKAGT-TGGDQQAAKGFP-CLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE---QLLVSCTTLPLLCELEID  252 (405)
Q Consensus       181 ~~~l~~~~~-~~~~~~~~~~~~-~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~---~l~~~l~~l~~L~~L~l~  252 (405)
                      +.-...++. ++       .++ +|++|+++++ .+.+.+|.   .+. |+.|+++++.   ..+..+..+++|+.|+++
T Consensus       159 N~l~~~~p~~l~-------~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          159 NRISGAIPDSYG-------SFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             SCCEEECCGGGG-------CCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             CcccCcCCHHHh-------hhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence            543334443 22       244 7777777764 34434443   222 6666666653   235566677777777777


Q ss_pred             CcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCccc-ccccCCCCCcccCC
Q 044605          253 GFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLV-SFPKGGLESLSFVR  331 (405)
Q Consensus       253 ~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~l~~l~  331 (405)
                      +|....                                     .+..+..+++|++|++++|.++ .+|..       +.
T Consensus       230 ~N~l~~-------------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-------l~  265 (313)
T 1ogq_A          230 KNSLAF-------------------------------------DLGKVGLSKNLNGLDLRNNRIYGTLPQG-------LT  265 (313)
T ss_dssp             SSEECC-------------------------------------BGGGCCCCTTCCEEECCSSCCEECCCGG-------GG
T ss_pred             CCceee-------------------------------------ecCcccccCCCCEEECcCCcccCcCChH-------Hh
Confidence            764322                                     1222456667777777776666 44444       45


Q ss_pred             CCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCcch
Q 044605          332 NLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDL  370 (405)
Q Consensus       332 ~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l  370 (405)
                      .+++|++|++++|...+.+|....+++|+.+++.++|.+
T Consensus       266 ~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence            667777777777655456666544556777777776644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.75  E-value=8.3e-17  Score=157.27  Aligned_cols=56  Identities=16%  Similarity=0.053  Sum_probs=41.3

Q ss_pred             hhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcc
Q 044605           22 TEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILG   84 (405)
Q Consensus        22 ~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~   84 (405)
                      +..+++|++|++++|.++.+|  ++++++|++|++....-   ..+ .++.+.+|+ .|.+..
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l---~~~-~~~~l~~L~-~L~L~~  115 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKL---TNL-DVTPLTKLT-YLNCDT  115 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC---SCC-CCTTCTTCC-EEECCS
T ss_pred             hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCC---cee-ecCCCCcCC-EEECCC
Confidence            345789999999999999987  99999999997543322   222 266677777 777754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=2.5e-16  Score=159.95  Aligned_cols=149  Identities=18%  Similarity=0.167  Sum_probs=107.2

Q ss_pred             CCCcccEEeeccCccccccCC----CCCCcccEEEEeccCC---ccccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605          199 GFPCLRELSIINCSKLKGRLP----QHFSSLERIVIMSCEQ---LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS  271 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~~l~----~~~~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  271 (405)
                      .+++|+.+++.++.... ..+    ..+++++.++++.+..   .+..+..+++|+.|++++|....    .+.++.|..
T Consensus       418 ~l~~L~~l~l~~~~~~~-~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~----~~~~~~~~~  492 (635)
T 4g8a_A          418 GLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLPDIFTE  492 (635)
T ss_dssp             TCTTCCEEECTTSEEES-TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----GEECSCCTT
T ss_pred             ccccccchhhhhccccc-cccccccccccccccccccccccccccccccccchhhhhhhhhhccccc----ccCchhhhh
Confidence            45666666666543333 222    1456677777766432   14556668899999999887665    566678888


Q ss_pred             CCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605          272 SNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK  348 (405)
Q Consensus       272 l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~  348 (405)
                      +++|  |++++|          +++.+ |..+.++++|+.|++++|+++.++...|      .++++|++|++++|...+
T Consensus       493 l~~L~~L~Ls~N----------~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~------~~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          493 LRNLTFLDLSQC----------QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY------KCLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             CTTCCEEECTTS----------CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG------TTCTTCCEEECTTSCCCB
T ss_pred             ccccCEEECCCC----------ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH------hCCCCCCEEECCCCcCCC
Confidence            8888  888888          44555 5678999999999999999999876654      788999999999975443


Q ss_pred             ccCCC--CCcCCccEEeecCCc
Q 044605          349 SFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       349 ~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      ..|..  ..+++|++|+++++|
T Consensus       557 ~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          557 SKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             CCSSCTTCCCTTCCEEECTTCC
T ss_pred             CCHHHHHhhhCcCCEEEeeCCC
Confidence            33433  345789999999754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=6.9e-17  Score=164.07  Aligned_cols=143  Identities=19%  Similarity=0.178  Sum_probs=87.6

Q ss_pred             CCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCcc--------------EEecCCC-Cc-ccccccC
Q 044605          240 CTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLP--------------WEIGSPD-QE-SLPEGLH  301 (405)
Q Consensus       240 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~--------------l~i~~~~-l~-~lp~~~~  301 (405)
                      +..+++|+.+++.++....    ..+...+..+..+  ++++.+....              +.++.+. .. ..|..+.
T Consensus       416 ~~~l~~L~~l~l~~~~~~~----~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~  491 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQ----MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT  491 (635)
T ss_dssp             CTTCTTCCEEECTTSEEES----TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             ccccccccchhhhhccccc----cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence            3445666666666554443    3333444555555  4444432111              2332222 23 3466788


Q ss_pred             CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCcchHHHhhcCcc
Q 044605          302 KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCPDLEEKCKKDER  379 (405)
Q Consensus       302 ~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~~~~~~~~~  379 (405)
                      .+++|+.|++++|+++.++...|      .++++|++|++++| .++.++..  ..+++|++|+++++. +..    ...
T Consensus       492 ~l~~L~~L~Ls~N~L~~l~~~~f------~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~----~~~  559 (635)
T 4g8a_A          492 ELRNLTFLDLSQCQLEQLSPTAF------NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH-IMT----SKK  559 (635)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTT------TTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC-CCB----CCS
T ss_pred             hccccCEEECCCCccCCcChHHH------cCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc-CCC----CCH
Confidence            99999999999999998876654      78889999999986 56666543  556799999999873 211    111


Q ss_pred             cccccc-cccCeeEecceEe
Q 044605          380 EYCHLV-ADIPFVQLNHKLV  398 (405)
Q Consensus       380 ~~~~~i-~~i~~~~~~~~~~  398 (405)
                      +....+ +.++.+.+.++.+
T Consensus       560 ~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          560 QELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             SCTTCCCTTCCEEECTTCCB
T ss_pred             HHHHhhhCcCCEEEeeCCCC
Confidence            222333 5678888877654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.73  E-value=2.5e-17  Score=155.66  Aligned_cols=204  Identities=17%  Similarity=0.176  Sum_probs=117.2

Q ss_pred             CCCCCCccEEEEEeeCCCCCCcc-cCCCCCCCccEEEEEcCCCCCcCCC---CCCCCCccEEeecCCCCCeeeCCCCCCC
Q 044605          119 LKPHYGLKELKVQNYGGTKFPAW-LGQSSFENLVVLRFRNCNQCTSLPS---VGHLPLLKNLVIKGMGRMAKAGTTGGDQ  194 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp~~-~~~~~l~~L~~L~l~~~~~~~~l~~---l~~l~~L~~L~l~~~~~l~~~~~~~~~~  194 (405)
                      +..+++|+.|++.++....+|.. +.  .+++|++|++++|. ++.+|.   +..+++|++|++.++..+..++.     
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----  167 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNLSSSWFK--PLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-----  167 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCHHHHT--TCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----
T ss_pred             cCCCCCCCEEECCCCcCCcCCHhHhC--CCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCH-----
Confidence            44567777777777766666554 44  57778888887775 555554   66778888888877655555533     


Q ss_pred             CCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC--Ccccc-CCCCCCcceEEEcCcCCccccccccccCC
Q 044605          195 QAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QLLVS-CTTLPLLCELEIDGFGEVAWINRPVEAGI  268 (405)
Q Consensus       195 ~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  268 (405)
                      .....+++|++|+++++ .+.+..|.   .+++|++|+++++.  .++.. +..+++|+.|++++|....     ++...
T Consensus       168 ~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~~~~  241 (353)
T 2z80_A          168 KDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-----FHFSE  241 (353)
T ss_dssp             TTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT-----CCCC-
T ss_pred             HHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc-----ccccc
Confidence            11223777888887775 34433343   46677777777754  22222 2336788888888775432     22211


Q ss_pred             CC---CCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeec
Q 044605          269 FD---SSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSR  343 (405)
Q Consensus       269 ~~---~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~  343 (405)
                      +.   ....+  +.+.++..     ..+.+..+|..+..+++|+.|++++|+++.+|...|      .++++|++|++++
T Consensus       242 l~~~~~~~~l~~l~L~~~~l-----~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~------~~l~~L~~L~L~~  310 (353)
T 2z80_A          242 LSTGETNSLIKKFTFRNVKI-----TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF------DRLTSLQKIWLHT  310 (353)
T ss_dssp             -----CCCCCCEEEEESCBC-----CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCS
T ss_pred             cccccccchhhccccccccc-----cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH------hcCCCCCEEEeeC
Confidence            11   11112  33332210     001112345566677777777777777777766532      5666777777777


Q ss_pred             CCCC
Q 044605          344 CPIL  347 (405)
Q Consensus       344 c~~l  347 (405)
                      |+..
T Consensus       311 N~~~  314 (353)
T 2z80_A          311 NPWD  314 (353)
T ss_dssp             SCBC
T ss_pred             CCcc
Confidence            6543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=4.8e-17  Score=158.83  Aligned_cols=34  Identities=12%  Similarity=0.026  Sum_probs=7.9

Q ss_pred             eeeEEEEEccCCCCccCccccCCCccCcccCcee
Q 044605           25 FVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFA   58 (405)
Q Consensus        25 ~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~   58 (405)
                      ...|++|++++|.++.+|.+|+++++|++|++..
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~   43 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAW   43 (454)
T ss_dssp             ------------------------CCHHHHHHHH
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccC
Confidence            4689999999999999999999999999997543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.73  E-value=9.6e-17  Score=156.82  Aligned_cols=174  Identities=21%  Similarity=0.263  Sum_probs=101.8

Q ss_pred             CCCCCCccEEEEEeeCCCCCCcc-cCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCC
Q 044605          119 LKPHYGLKELKVQNYGGTKFPAW-LGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQ  195 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp~~-~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  195 (405)
                      +..+++|+.|++.++....+|.. +.  .+++|+.|++++|. ++.++.  +..+++|++|++.++..+..++.     .
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-----~  190 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIPSGAFE--YLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE-----G  190 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCTTTSS--SCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT-----T
T ss_pred             ccCcccCCEEECCCCcCCccChhhhc--ccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh-----h
Confidence            44456677777777665555543 33  56777777777766 555553  66677777777777666666654     1


Q ss_pred             CCCCCCcccEEeeccCccccccCCC--CCCcccEEEEeccCC--c-cccCCCCCCcceEEEcCcCCccccccccccCCCC
Q 044605          196 AAKGFPCLRELSIINCSKLKGRLPQ--HFSSLERIVIMSCEQ--L-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFD  270 (405)
Q Consensus       196 ~~~~~~~L~~L~l~~~~~l~~~l~~--~~~~L~~L~l~~c~~--l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  270 (405)
                      ....+++|++|+++++ .++ .+|.  .+++|+.|+++++.-  + +..|..+++|+.|++++|..              
T Consensus       191 ~~~~l~~L~~L~L~~n-~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l--------------  254 (452)
T 3zyi_A          191 AFEGLFNLKYLNLGMC-NIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV--------------  254 (452)
T ss_dssp             TTTTCTTCCEEECTTS-CCS-SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC--------------
T ss_pred             hccCCCCCCEEECCCC-ccc-ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC--------------
Confidence            1223667777777664 333 2332  344455555544321  1 33444444555555444422              


Q ss_pred             CCCCCeeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          271 SSNPGPEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       271 ~l~~Ll~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                                             +.+ |..+..+++|+.|++++|+++.++...|      ..+++|++|++++|+
T Consensus       255 -----------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          255 -----------------------SLIERNAFDGLASLVELNLAHNNLSSLPHDLF------TPLRYLVELHLHHNP  301 (452)
T ss_dssp             -----------------------CEECTTTTTTCTTCCEEECCSSCCSCCCTTSS------TTCTTCCEEECCSSC
T ss_pred             -----------------------ceECHHHhcCCCCCCEEECCCCcCCccChHHh------ccccCCCEEEccCCC
Confidence                                   222 3456677778888887777777776543      566777778777765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.72  E-value=2e-16  Score=154.43  Aligned_cols=176  Identities=18%  Similarity=0.136  Sum_probs=102.3

Q ss_pred             cCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605          118 MLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA  197 (405)
Q Consensus       118 ~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  197 (405)
                      .+..+++|+.|++.+|....+|..     .++|+.|++++|. +..+|.++.+++|++|++.++. +..++.        
T Consensus       190 ~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~l~~N~-l~~l~~--------  254 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNI-LEELPELQNLPFLTTIYADNNL-LKTLPD--------  254 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSSCCS--------
T ss_pred             cccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCc-CCcccccCCCCCCCEEECCCCc-CCcccc--------
Confidence            356677777777777766555542     3567777877775 5577777777888888877653 333322        


Q ss_pred             CCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCC-CCCcceEEEcCcCCccccccccccCCCCCC-CCC
Q 044605          198 KGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTT-LPLLCELEIDGFGEVAWINRPVEAGIFDSS-NPG  275 (405)
Q Consensus       198 ~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l-~~L  275 (405)
                       .+++|++|+++++ .++ .+|..+++|+.|++++|. + ..++. .++|+.|++++|....     ++     .+ ++|
T Consensus       255 -~~~~L~~L~l~~N-~l~-~l~~~~~~L~~L~ls~N~-l-~~l~~~~~~L~~L~l~~N~l~~-----i~-----~~~~~L  319 (454)
T 1jl5_A          255 -LPPSLEALNVRDN-YLT-DLPELPQSLTFLDVSENI-F-SGLSELPPNLYYLNASSNEIRS-----LC-----DLPPSL  319 (454)
T ss_dssp             -CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSC-C-SEESCCCTTCCEEECCSSCCSE-----EC-----CCCTTC
T ss_pred             -cccccCEEECCCC-ccc-ccCcccCcCCEEECcCCc-c-CcccCcCCcCCEEECcCCcCCc-----cc-----CCcCcC
Confidence             2467777777765 444 355556777777777653 1 11111 2566777776664331     11     11 233


Q ss_pred             --eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          276 --PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       276 --l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                        ++++++          .++.+|..   +++|+.|++++|+++.+|.          .+++|++|++++|..
T Consensus       320 ~~L~Ls~N----------~l~~lp~~---~~~L~~L~L~~N~l~~lp~----------~l~~L~~L~L~~N~l  369 (454)
T 1jl5_A          320 EELNVSNN----------KLIELPAL---PPRLERLIASFNHLAEVPE----------LPQNLKQLHVEYNPL  369 (454)
T ss_dssp             CEEECCSS----------CCSCCCCC---CTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCC
T ss_pred             CEEECCCC----------cccccccc---CCcCCEEECCCCccccccc----------hhhhccEEECCCCCC
Confidence              455544          33444442   4666666666666666553          235666666666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=1.1e-16  Score=155.81  Aligned_cols=177  Identities=23%  Similarity=0.338  Sum_probs=102.5

Q ss_pred             CCCCCCccEEEEEeeCCCCCCcc-cCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCC
Q 044605          119 LKPHYGLKELKVQNYGGTKFPAW-LGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQ  195 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp~~-~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  195 (405)
                      +..+++|+.|++.+|....+|.. +.  .+++|+.|++++|. ++.++.  +..+++|++|++.++..+..++.     .
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-----~  179 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTIPNGAFV--YLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISE-----G  179 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSCCTTTSC--SCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT-----T
T ss_pred             ccCCccCCEEECCCCcCCeeCHhHhh--ccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCc-----c
Confidence            34456677777777665555542 33  56777777777766 555553  66677777777777666666644     1


Q ss_pred             CCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC
Q 044605          196 AAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG  275 (405)
Q Consensus       196 ~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L  275 (405)
                      ....+++|++|+++++ .++ .+|.                   +..+++|+.|++++|...     .++...|..+++|
T Consensus       180 ~~~~l~~L~~L~L~~n-~l~-~~~~-------------------~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L  233 (440)
T 3zyj_A          180 AFEGLSNLRYLNLAMC-NLR-EIPN-------------------LTPLIKLDELDLSGNHLS-----AIRPGSFQGLMHL  233 (440)
T ss_dssp             TTTTCSSCCEEECTTS-CCS-SCCC-------------------CTTCSSCCEEECTTSCCC-----EECTTTTTTCTTC
T ss_pred             hhhcccccCeecCCCC-cCc-cccc-------------------cCCCcccCEEECCCCccC-----ccChhhhccCccC
Confidence            1223667777777664 333 2332                   333444555555544322     2333344444444


Q ss_pred             --eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          276 --PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       276 --l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                        ++++++          .++.+ +..+.++++|+.|++++|+++.++...|      ..+++|+.|++++|+
T Consensus       234 ~~L~L~~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          234 QKLWMIQS----------QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF------TPLHHLERIHLHHNP  290 (440)
T ss_dssp             CEEECTTC----------CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT------SSCTTCCEEECCSSC
T ss_pred             CEEECCCC----------ceeEEChhhhcCCCCCCEEECCCCCCCccChhHh------ccccCCCEEEcCCCC
Confidence              444444          22323 3356677778888887777777776543      566777778777765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.72  E-value=6e-17  Score=151.46  Aligned_cols=208  Identities=22%  Similarity=0.298  Sum_probs=129.5

Q ss_pred             eeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccccCC
Q 044605           26 VIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSDS  105 (405)
Q Consensus        26 ~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~~~  105 (405)
                      ..+++|++++|.++.+|..++++.+|++|++....-.  ..+..++.+.+|+ +|.+.... +..               
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~-~L~Ls~n~-l~~---------------  141 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLE-TLTLARNP-LRA---------------  141 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCS-EEEEESCC-CCC---------------
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCC-EEECCCCc-ccc---------------
Confidence            5777888888888888888888888888875433221  3334566677776 77765422 111               


Q ss_pred             hhhHHHHHHHhccCCCCCCccEEEEEeeC-CCCCCcccCC-------CCCCCccEEEEEcCCCCCcCCC-CCCCCCccEE
Q 044605          106 REVAEIQTRVLEMLKPHYGLKELKVQNYG-GTKFPAWLGQ-------SSFENLVVLRFRNCNQCTSLPS-VGHLPLLKNL  176 (405)
Q Consensus       106 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~lp~~~~~-------~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L  176 (405)
                               +...+..+++|+.|++.+|. ...+|..+..       ..+++|+.|++++|. ++.+|. ++.+++|++|
T Consensus       142 ---------lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L  211 (328)
T 4fcg_A          142 ---------LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL  211 (328)
T ss_dssp             ---------CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEE
T ss_pred             ---------CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEE
Confidence                     12234456677777777754 4555654430       126777777777775 456654 6677777777


Q ss_pred             eecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccCC---ccccCCCCCCcceEE
Q 044605          177 VIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCEQ---LLVSCTTLPLLCELE  250 (405)
Q Consensus       177 ~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~~---l~~~l~~l~~L~~L~  250 (405)
                      ++.++. +..++.      ....+++|++|++++|.... .+|.   .+++|+.|++++|..   +|..+..+++|+.|+
T Consensus       212 ~L~~N~-l~~l~~------~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  283 (328)
T 4fcg_A          212 KIRNSP-LSALGP------AIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD  283 (328)
T ss_dssp             EEESSC-CCCCCG------GGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred             EccCCC-CCcCch------hhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence            777654 333433      12236777777777765444 4553   467777777777653   355666677788888


Q ss_pred             EcCcCCccccccccccCCCCCCCCC
Q 044605          251 IDGFGEVAWINRPVEAGIFDSSNPG  275 (405)
Q Consensus       251 l~~~~~l~~~~~~~~~~~~~~l~~L  275 (405)
                      +++|+.++    .+|. .+..++.+
T Consensus       284 L~~n~~~~----~iP~-~l~~L~~L  303 (328)
T 4fcg_A          284 LRGCVNLS----RLPS-LIAQLPAN  303 (328)
T ss_dssp             CTTCTTCC----CCCG-GGGGSCTT
T ss_pred             CCCCCchh----hccH-HHhhccCc
Confidence            88777776    5554 56666666

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.68  E-value=4.9e-15  Score=149.44  Aligned_cols=253  Identities=23%  Similarity=0.151  Sum_probs=167.1

Q ss_pred             eeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccccC
Q 044605           25 FVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSSD  104 (405)
Q Consensus        25 ~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~~  104 (405)
                      ...+++|++++|.++.+|..+.  .+|++|++....   ...+..  .+.+|+ .|.+.... +..+             
T Consensus        39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~---l~~lp~--~l~~L~-~L~Ls~N~-l~~l-------------   96 (622)
T 3g06_A           39 NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN---LTSLPA--LPPELR-TLEVSGNQ-LTSL-------------   96 (622)
T ss_dssp             HHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC---CSCCCC--CCTTCC-EEEECSCC-CSCC-------------
T ss_pred             CCCCcEEEecCCCcCccChhhC--CCCcEEEecCCC---CCCCCC--cCCCCC-EEEcCCCc-CCcC-------------
Confidence            3468899999999999998876  788888753322   112222  345566 66665422 1110             


Q ss_pred             ChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCC
Q 044605          105 SREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRM  184 (405)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l  184 (405)
                                 ..   .+++|+.|++.+|....+|.     .+++|+.|++++|. ++.+|..  +++|++|+++++. +
T Consensus        97 -----------p~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N~-l  153 (622)
T 3g06_A           97 -----------PV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDNQ-L  153 (622)
T ss_dssp             -----------CC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSC-C
T ss_pred             -----------CC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCCc-C
Confidence                       11   35788888888887777765     46788888888876 6667652  5888888888763 4


Q ss_pred             eeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccC-CCCCCcceEEEcCcCCccccccc
Q 044605          185 AKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSC-TTLPLLCELEIDGFGEVAWINRP  263 (405)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l-~~l~~L~~L~l~~~~~l~~~~~~  263 (405)
                      ..++.         .+++|+.|+++++ .++ .+|..+++|+.|++++|. + ..+ ..+++|+.|++++|...     .
T Consensus       154 ~~l~~---------~~~~L~~L~L~~N-~l~-~l~~~~~~L~~L~Ls~N~-l-~~l~~~~~~L~~L~L~~N~l~-----~  215 (622)
T 3g06_A          154 ASLPA---------LPSELCKLWAYNN-QLT-SLPMLPSGLQELSVSDNQ-L-ASLPTLPSELYKLWAYNNRLT-----S  215 (622)
T ss_dssp             SCCCC---------CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSC-C-SCCCCCCTTCCEEECCSSCCS-----S
T ss_pred             CCcCC---------ccCCCCEEECCCC-CCC-CCcccCCCCcEEECCCCC-C-CCCCCccchhhEEECcCCccc-----c
Confidence            44432         3578888888774 555 366677888888887754 2 112 12468888888877543     2


Q ss_pred             cccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEee
Q 044605          264 VEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLEL  341 (405)
Q Consensus       264 ~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l  341 (405)
                      ++. .   +++|  +++++|          .++.+|   ..+++|+.|++++|.++.+|.          .+++|+.|++
T Consensus       216 l~~-~---~~~L~~L~Ls~N----------~L~~lp---~~l~~L~~L~Ls~N~L~~lp~----------~~~~L~~L~L  268 (622)
T 3g06_A          216 LPA-L---PSGLKELIVSGN----------RLTSLP---VLPSELKELMVSGNRLTSLPM----------LPSGLLSLSV  268 (622)
T ss_dssp             CCC-C---CTTCCEEECCSS----------CCSCCC---CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEEC
T ss_pred             cCC-C---CCCCCEEEccCC----------ccCcCC---CCCCcCcEEECCCCCCCcCCc----------ccccCcEEeC
Confidence            332 1   2345  666665          445566   456788888888888877764          3467888888


Q ss_pred             ecCCCCcccCCC-CCcCCccEEeecCCc
Q 044605          342 SRCPILKSFPEN-GLLPSVVYLSIYLCP  368 (405)
Q Consensus       342 ~~c~~l~~l~~~-~~~~~L~~L~i~~c~  368 (405)
                      ++| .++.+|.. ..+++|+.|++++++
T Consensus       269 s~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          269 YRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            876 45677765 455688888888875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.67  E-value=1.2e-16  Score=148.58  Aligned_cols=211  Identities=11%  Similarity=0.034  Sum_probs=162.9

Q ss_pred             CCCCCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605          120 KPHYGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK  198 (405)
Q Consensus       120 ~~~~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  198 (405)
                      ..+++|+.|++.++....++ ..+.  .+++|+.|++++|. ++.++++..+++|++|+++++. +..++.         
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~---------   97 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV---------   97 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHT--TCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSE-EEEEEE---------
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhh--CCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCc-cccccC---------
Confidence            34678999999998876665 4565  78999999999987 6656668999999999999874 666655         


Q ss_pred             CCCcccEEeeccCccccccCCCCCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCC-CCCCC
Q 044605          199 GFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIF-DSSNP  274 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~  274 (405)
                       .++|++|+++++ .+.+..+..+++|+.|+++++.  .+ +..+..+++|++|++++|....     ++...+ ..+++
T Consensus        98 -~~~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~~l~~  170 (317)
T 3o53_A           98 -GPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----VNFAELAASSDT  170 (317)
T ss_dssp             -CTTCCEEECCSS-CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE-----EEGGGGGGGTTT
T ss_pred             -CCCcCEEECCCC-ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc-----ccHHHHhhccCc
Confidence             689999999986 4554455578999999999875  23 4467778999999999987653     333333 46677


Q ss_pred             C--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCC
Q 044605          275 G--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE  352 (405)
Q Consensus       275 L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~  352 (405)
                      |  +++++|          .++.+|. ...+++|+.|++++|+++.+|..       +..+++|++|++++| .++.+|.
T Consensus       171 L~~L~L~~N----------~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~-------~~~l~~L~~L~L~~N-~l~~l~~  231 (317)
T 3o53_A          171 LEHLNLQYN----------FIYDVKG-QVVFAKLKTLDLSSNKLAFMGPE-------FQSAAGVTWISLRNN-KLVLIEK  231 (317)
T ss_dssp             CCEEECTTS----------CCCEEEC-CCCCTTCCEEECCSSCCCEECGG-------GGGGTTCSEEECTTS-CCCEECT
T ss_pred             CCEEECCCC----------cCccccc-ccccccCCEEECCCCcCCcchhh-------hcccCcccEEECcCC-cccchhh
Confidence            7  888887          4455543 33589999999999999988876       578889999999997 5677876


Q ss_pred             C-CCcCCccEEeecCCcc
Q 044605          353 N-GLLPSVVYLSIYLCPD  369 (405)
Q Consensus       353 ~-~~~~~L~~L~i~~c~~  369 (405)
                      . ..+++|+.|++++++-
T Consensus       232 ~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             TCCCCTTCCEEECTTCCC
T ss_pred             HhhcCCCCCEEEccCCCc
Confidence            6 5567999999998863

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.67  E-value=6.2e-16  Score=143.03  Aligned_cols=217  Identities=18%  Similarity=0.131  Sum_probs=163.1

Q ss_pred             CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcC----CCCCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSL----PSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA  197 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l----~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  197 (405)
                      .++|+.|++.++....+|.... ..+++|+.|++++|. ++.+    +.+..+++|++|+++++. +..++.      ..
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~------~~   97 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS------NF   97 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEE------EE
T ss_pred             CCCCCEEECCCCccCccCHhHh-hccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChh------hc
Confidence            3679999999988878877542 278999999999887 5433    235568999999999874 445544      12


Q ss_pred             CCCCcccEEeeccCccccccCC----CCCCcccEEEEeccCC---ccccCCCCCCcceEEEcCcCCccccccccccCCCC
Q 044605          198 KGFPCLRELSIINCSKLKGRLP----QHFSSLERIVIMSCEQ---LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFD  270 (405)
Q Consensus       198 ~~~~~L~~L~l~~~~~l~~~l~----~~~~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  270 (405)
                      ..+++|++|+++++ .+++..+    ..+++|+.|++++|.-   .+..+..+++|++|++++|....    ...+..+.
T Consensus        98 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~  172 (306)
T 2z66_A           98 LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLPDIFT  172 (306)
T ss_dssp             ETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG----GEECSCCT
T ss_pred             CCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc----ccchhHHh
Confidence            23899999999986 4443222    2678999999998752   25567789999999999986543    34456788


Q ss_pred             CCCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCC
Q 044605          271 SSNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIL  347 (405)
Q Consensus       271 ~l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l  347 (405)
                      .+++|  +++++|          .++.+ |..+..+++|+.|++++|.++.++...      +..+++|++|++++|...
T Consensus       173 ~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          173 ELRNLTFLDLSQC----------QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP------YKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             TCTTCCEEECTTS----------CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG------GTTCTTCCEEECTTSCCC
T ss_pred             hCcCCCEEECCCC----------CcCCcCHHHhcCCCCCCEEECCCCccCccChhh------ccCcccCCEeECCCCCCc
Confidence            88888  888888          44555 567889999999999999999887644      378899999999998655


Q ss_pred             cccCCC--CCcCCccEEeecCCc
Q 044605          348 KSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       348 ~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      +..+..  ..+++|++|++++++
T Consensus       237 ~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          237 TSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             BCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ccCHHHHHhhhccCCEEEccCCC
Confidence            555544  344699999999975

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.67  E-value=2.9e-16  Score=154.74  Aligned_cols=214  Identities=11%  Similarity=0.021  Sum_probs=167.6

Q ss_pred             CCCCCCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605          119 LKPHYGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA  197 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  197 (405)
                      ...+++|+.|++.++....++ ..+.  .+++|+.|++++|. ++..++++.+++|++|+++++ .+..++.        
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~--------   97 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN-YVQELLV--------   97 (487)
T ss_dssp             STTGGGCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSS-EEEEEEE--------
T ss_pred             cccCCCccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCC-cCCCCCC--------
Confidence            445678999999998876664 5666  79999999999988 665556999999999999987 4666655        


Q ss_pred             CCCCcccEEeeccCccccccCCCCCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCC
Q 044605          198 KGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNP  274 (405)
Q Consensus       198 ~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~  274 (405)
                        .++|++|+++++ .+.+..+..+++|+.|++++|.  .+ +..+..+++|++|++++|....    ..+......+++
T Consensus        98 --~~~L~~L~L~~N-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~~l~~  170 (487)
T 3oja_A           98 --GPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDT  170 (487)
T ss_dssp             --CTTCCEEECCSS-CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE----EEGGGGGGGTTT
T ss_pred             --CCCcCEEECcCC-cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC----cChHHHhhhCCc
Confidence              589999999996 5554455678999999999875  22 5567789999999999997664    333333346778


Q ss_pred             C--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCC
Q 044605          275 G--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE  352 (405)
Q Consensus       275 L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~  352 (405)
                      |  |++++|          .++.+|. ...+++|+.|++++|.++.+|..       +..+++|+.|++++|. ++.+|.
T Consensus       171 L~~L~Ls~N----------~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~-------~~~l~~L~~L~Ls~N~-l~~lp~  231 (487)
T 3oja_A          171 LEHLNLQYN----------FIYDVKG-QVVFAKLKTLDLSSNKLAFMGPE-------FQSAAGVTWISLRNNK-LVLIEK  231 (487)
T ss_dssp             CCEEECTTS----------CCCEEEC-CCCCTTCCEEECCSSCCCEECGG-------GGGGTTCSEEECTTSC-CCEECT
T ss_pred             ccEEecCCC----------ccccccc-cccCCCCCEEECCCCCCCCCCHh-------HcCCCCccEEEecCCc-Ccccch
Confidence            8  888888          3455544 34699999999999999998876       5788999999999964 667877


Q ss_pred             C-CCcCCccEEeecCCcch
Q 044605          353 N-GLLPSVVYLSIYLCPDL  370 (405)
Q Consensus       353 ~-~~~~~L~~L~i~~c~~l  370 (405)
                      . ..+++|+.|++++++-.
T Consensus       232 ~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          232 ALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TCCCCTTCCEEECTTCCBC
T ss_pred             hhccCCCCCEEEcCCCCCc
Confidence            6 55679999999998643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.66  E-value=4.4e-15  Score=144.47  Aligned_cols=212  Identities=16%  Similarity=0.170  Sum_probs=147.8

Q ss_pred             CCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605          123 YGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG  199 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  199 (405)
                      .+++.|++.++....++ ..+.  .+++|+.|++++|. +..++  .+..+++|++|++.++ .+..++.     .....
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-----~~~~~  134 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPN-----GAFVY  134 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCCT-----TTSCS
T ss_pred             CCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeCH-----hHhhc
Confidence            56788888877665554 3344  67888888888876 55554  3777888888888775 3444433     11224


Q ss_pred             CCcccEEeeccCccccccCC---CCCCcccEEEEeccCCc----cccCCCCCCcceEEEcCcCCccccccccccCCCCCC
Q 044605          200 FPCLRELSIINCSKLKGRLP---QHFSSLERIVIMSCEQL----LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSS  272 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~---~~~~~L~~L~l~~c~~l----~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l  272 (405)
                      +++|++|+++++ .+....+   ..+++|+.|++.+|..+    +..|..+++|++|++++|...     .++  .+..+
T Consensus       135 l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-----~~~--~~~~l  206 (440)
T 3zyj_A          135 LSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-----EIP--NLTPL  206 (440)
T ss_dssp             CSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-----SCC--CCTTC
T ss_pred             cccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-----ccc--ccCCC
Confidence            788888888875 3442222   15778888888876644    235667888888888887544     333  35666


Q ss_pred             CCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcc
Q 044605          273 NPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKS  349 (405)
Q Consensus       273 ~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~  349 (405)
                      .+|  |+++++          .++.+ |..+.++++|+.|++++|+++.++...|      .++++|++|++++| .++.
T Consensus       207 ~~L~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~  269 (440)
T 3zyj_A          207 IKLDELDLSGN----------HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF------DNLQSLVEINLAHN-NLTL  269 (440)
T ss_dssp             SSCCEEECTTS----------CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS------TTCTTCCEEECTTS-CCCC
T ss_pred             cccCEEECCCC----------ccCccChhhhccCccCCEEECCCCceeEEChhhh------cCCCCCCEEECCCC-CCCc
Confidence            666  777776          44544 5678899999999999999988876654      78889999999986 5666


Q ss_pred             cCCC--CCcCCccEEeecCCc
Q 044605          350 FPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       350 l~~~--~~~~~L~~L~i~~c~  368 (405)
                      ++..  ..+++|+.|+++++|
T Consensus       270 ~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          270 LPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCTTTTSSCTTCCEEECCSSC
T ss_pred             cChhHhccccCCCEEEcCCCC
Confidence            7654  445789999999876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.66  E-value=3e-16  Score=145.70  Aligned_cols=238  Identities=16%  Similarity=0.140  Sum_probs=172.6

Q ss_pred             CCccEEEEEeeCCC---CCCcccCCCCCCCccEEEEEc-CCCCCcCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605          123 YGLKELKVQNYGGT---KFPAWLGQSSFENLVVLRFRN-CNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA  197 (405)
Q Consensus       123 ~~L~~L~l~~~~~~---~lp~~~~~~~l~~L~~L~l~~-~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  197 (405)
                      .+++.|++.++...   .+|..+.  .+++|+.|++++ +.....+|. ++.+++|++|++.++.-...++.      ..
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~------~~  121 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD------FL  121 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG------GG
T ss_pred             ceEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH------HH
Confidence            57899999987754   5787777  799999999996 553445664 88899999999988754445554      12


Q ss_pred             CCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC---CccccCCCCC-CcceEEEcCcCCccccccccccCCCC
Q 044605          198 KGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE---QLLVSCTTLP-LLCELEIDGFGEVAWINRPVEAGIFD  270 (405)
Q Consensus       198 ~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~---~l~~~l~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~  270 (405)
                      ..+++|++|+++++ .+.+.+|.   .+++|++|+++++.   .+|..+..++ +|+.|++++|...+    .+ +..+.
T Consensus       122 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~----~~-~~~~~  195 (313)
T 1ogq_A          122 SQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG----KI-PPTFA  195 (313)
T ss_dssp             GGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE----EC-CGGGG
T ss_pred             hCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec----cC-ChHHh
Confidence            24899999999986 45545664   68899999999875   3467787887 99999999986653    22 33555


Q ss_pred             CCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605          271 SSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK  348 (405)
Q Consensus       271 ~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~  348 (405)
                      .+. |  ++++++...         ...|..+..+++|+.|++++|.++..+..       +..+++|++|++++|...+
T Consensus       196 ~l~-L~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          196 NLN-LAFVDLSRNMLE---------GDASVLFGSDKNTQKIHLAKNSLAFDLGK-------VGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             GCC-CSEEECCSSEEE---------ECCGGGCCTTSCCSEEECCSSEECCBGGG-------CCCCTTCCEEECCSSCCEE
T ss_pred             CCc-ccEEECcCCccc---------CcCCHHHhcCCCCCEEECCCCceeeecCc-------ccccCCCCEEECcCCcccC
Confidence            554 6  788777322         24567888999999999999998854443       4678999999999987655


Q ss_pred             ccCCC-CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceE
Q 044605          349 SFPEN-GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKL  397 (405)
Q Consensus       349 ~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~  397 (405)
                      .+|.. ..+++|++|++++++ +....+     .+..+.+++.+.+.++.
T Consensus       259 ~~p~~l~~l~~L~~L~Ls~N~-l~~~ip-----~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          259 TLPQGLTQLKFLHSLNVSFNN-LCGEIP-----QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSE-EEEECC-----CSTTGGGSCGGGTCSSS
T ss_pred             cCChHHhcCcCCCEEECcCCc-ccccCC-----CCccccccChHHhcCCC
Confidence            77765 556799999999984 221111     12445666666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.66  E-value=3.4e-16  Score=144.74  Aligned_cols=172  Identities=20%  Similarity=0.188  Sum_probs=104.5

Q ss_pred             CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC---CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP---SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK  198 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~---~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  198 (405)
                      +++|+.|++.++....+|..+.  .+++|+.|++++|. ++.++   .+..+++|++|++.++. +..+..     ....
T Consensus        77 ~~~L~~L~Ls~n~i~~l~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-----~~~~  147 (306)
T 2z66_A           77 TTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN-----GIFN  147 (306)
T ss_dssp             CSCCCEEECCSCSEEEEEEEEE--TCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECST-----TTTT
T ss_pred             ccccCEEECCCCccccChhhcC--CCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccch-----hhcc
Confidence            4667777777776555666555  67888888887776 44443   36677888888887764 333222     0122


Q ss_pred             CCCcccEEeeccCccccc-cCCC---CCCcccEEEEeccCC--c-cccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605          199 GFPCLRELSIINCSKLKG-RLPQ---HFSSLERIVIMSCEQ--L-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS  271 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~-~l~~---~~~~L~~L~l~~c~~--l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  271 (405)
                      .+++|++|+++++. +.+ .+|.   .+++|+.|++++|.-  + +..+..+++|++|++++|.                
T Consensus       148 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~----------------  210 (306)
T 2z66_A          148 GLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN----------------  210 (306)
T ss_dssp             TCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC----------------
T ss_pred             cCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc----------------
Confidence            36777777777753 322 2222   344555555554421  1 2344445555555555442                


Q ss_pred             CCCCeeecCCCCccEEecCCCCcccc-cccCCCCCccEEEEeCCcccccccCCCCCcccCCCC-CCcCEEeeecCCC
Q 044605          272 SNPGPEKSRTEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNL-TSLERLELSRCPI  346 (405)
Q Consensus       272 l~~Ll~l~~~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l-~~L~~L~l~~c~~  346 (405)
                                           ++.++ ..+..+++|+.|++++|.++.++...+      ..+ ++|++|++++|+.
T Consensus       211 ---------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          211 ---------------------FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL------QHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             ---------------------CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC------CCCCTTCCEEECTTCCE
T ss_pred             ---------------------cCccChhhccCcccCCEeECCCCCCcccCHHHH------HhhhccCCEEEccCCCe
Confidence                                 23333 256788999999999998887665443      556 4899999998764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.65  E-value=3.8e-15  Score=136.24  Aligned_cols=209  Identities=17%  Similarity=0.175  Sum_probs=143.5

Q ss_pred             EEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCccc
Q 044605          127 ELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLR  204 (405)
Q Consensus       127 ~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~  204 (405)
                      .++..+.....+|..    ..++|++|+++++. ++.++.  +..+++|++|++.++. +..+..     .....+++|+
T Consensus        15 ~~~c~~~~l~~ip~~----~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~   83 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVG----IPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNV-LARIDA-----AAFTGLALLE   83 (285)
T ss_dssp             EEECCSSCCSSCCTT----CCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECT-----TTTTTCTTCC
T ss_pred             EEEcCcCCcccCCcC----CCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCc-cceeCH-----hhcCCccCCC
Confidence            344444444455543    24678888888776 565553  7778888888888763 444422     0122378888


Q ss_pred             EEeeccCccccccCCC---CCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--e
Q 044605          205 ELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--P  276 (405)
Q Consensus       205 ~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l  276 (405)
                      +|+++++..+....+.   .+++|+.|+++++.  .+ +..+..+++|++|++++|...     .++...+..+++|  +
T Consensus        84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-----ALPDDTFRDLGNLTHL  158 (285)
T ss_dssp             EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEE
T ss_pred             EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-----ccCHhHhccCCCccEE
Confidence            8888886545533232   56788888888764  22 455777888999998887654     4565567777777  7


Q ss_pred             eecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--
Q 044605          277 EKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--  353 (405)
Q Consensus       277 ~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--  353 (405)
                      +++++          +++.+|. .+..+++|+.|++++|.++.++...      +.++++|++|++++|. ++.++..  
T Consensus       159 ~l~~n----------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~l~~n~-l~~~~~~~~  221 (285)
T 1ozn_A          159 FLHGN----------RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA------FRDLGRLMTLYLFANN-LSALPTEAL  221 (285)
T ss_dssp             ECCSS----------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTT------TTTCTTCCEEECCSSC-CSCCCHHHH
T ss_pred             ECCCC----------cccccCHHHhcCccccCEEECCCCcccccCHhH------ccCcccccEeeCCCCc-CCcCCHHHc
Confidence            77776          4456665 4778999999999998888874443      4778899999999874 5556533  


Q ss_pred             CCcCCccEEeecCCc
Q 044605          354 GLLPSVVYLSIYLCP  368 (405)
Q Consensus       354 ~~~~~L~~L~i~~c~  368 (405)
                      ...++|++|+++++|
T Consensus       222 ~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          222 APLRALQYLRLNDNP  236 (285)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             ccCcccCEEeccCCC
Confidence            455789999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=7.7e-15  Score=143.27  Aligned_cols=211  Identities=19%  Similarity=0.181  Sum_probs=154.5

Q ss_pred             CCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605          123 YGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG  199 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  199 (405)
                      ++++.|++.++....+ |..+.  .+++|+.|++++|. +..++  .+..+++|++|++.++. +..++.     .....
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~  145 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVIPS-----GAFEY  145 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBCCT-----TTSSS
T ss_pred             CCccEEECcCCcCceECHHHcC--CCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCccCh-----hhhcc
Confidence            6788888888776555 34454  68889999998886 55554  37788899999988764 445543     11224


Q ss_pred             CCcccEEeeccCccccccCCC----CCCcccEEEEeccCCc----cccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605          200 FPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSCEQL----LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS  271 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c~~l----~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  271 (405)
                      +++|++|+++++ .+.. ++.    .+++|+.|++++|..+    +..|..+++|+.|++++|...     .++  .+..
T Consensus       146 l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-----~~~--~~~~  216 (452)
T 3zyi_A          146 LSKLRELWLRNN-PIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-----DMP--NLTP  216 (452)
T ss_dssp             CTTCCEEECCSC-CCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-----SCC--CCTT
T ss_pred             cCCCCEEECCCC-Ccce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-----ccc--cccc
Confidence            888999999885 3442 332    5788899998887655    235677889999999888654     232  4666


Q ss_pred             CCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605          272 SNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK  348 (405)
Q Consensus       272 l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~  348 (405)
                      +.+|  |+++++          .++.+ |..+.++++|+.|++++|+++.++...|      .++++|++|++++| .++
T Consensus       217 l~~L~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~N-~l~  279 (452)
T 3zyi_A          217 LVGLEELEMSGN----------HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF------DGLASLVELNLAHN-NLS  279 (452)
T ss_dssp             CTTCCEEECTTS----------CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT------TTCTTCCEEECCSS-CCS
T ss_pred             cccccEEECcCC----------cCcccCcccccCccCCCEEEeCCCcCceECHHHh------cCCCCCCEEECCCC-cCC
Confidence            6677  778777          44444 6678899999999999999998876654      78899999999997 566


Q ss_pred             ccCCC--CCcCCccEEeecCCc
Q 044605          349 SFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       349 ~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      .++..  ..+++|+.|++.++|
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          280 SLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCCTTSSTTCTTCCEEECCSSC
T ss_pred             ccChHHhccccCCCEEEccCCC
Confidence            77654  445799999999876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.65  E-value=6.3e-15  Score=148.62  Aligned_cols=247  Identities=20%  Similarity=0.119  Sum_probs=176.6

Q ss_pred             cccccCchhhheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhh
Q 044605           14 METINGDFTEIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAED   93 (405)
Q Consensus        14 l~~l~~~~~~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~   93 (405)
                      +..+|..++   ++|++|++++|.++.+|.   .+.+|++|++....   ...+..  .+.+|+ .|.+.... +...  
T Consensus        52 L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~---l~~lp~--~l~~L~-~L~Ls~N~-l~~l--  116 (622)
T 3g06_A           52 LTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ---LTSLPV--LPPGLL-ELSIFSNP-LTHL--  116 (622)
T ss_dssp             CSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC---CSCCCC--CCTTCC-EEEECSCC-CCCC--
T ss_pred             cCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc---CCcCCC--CCCCCC-EEECcCCc-CCCC--
Confidence            456666554   689999999999999998   57889998753332   122222  455666 77775421 1110  


Q ss_pred             hhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCc
Q 044605           94 AKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLL  173 (405)
Q Consensus        94 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L  173 (405)
                                            ..   .+.+|+.|++.+|....+|.     .+++|+.|++++|. ++.+|.  .+++|
T Consensus       117 ----------------------~~---~l~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~-l~~l~~--~~~~L  163 (622)
T 3g06_A          117 ----------------------PA---LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQ-LASLPA--LPSEL  163 (622)
T ss_dssp             ----------------------CC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSC-CSCCCC--CCTTC
T ss_pred             ----------------------CC---CCCCcCEEECCCCCCCcCCC-----CCCCCCEEECcCCc-CCCcCC--ccCCC
Confidence                                  00   35789999999988777776     35889999999986 666664  35789


Q ss_pred             cEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccC-CCCCCcceEEEc
Q 044605          174 KNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSC-TTLPLLCELEID  252 (405)
Q Consensus       174 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l-~~l~~L~~L~l~  252 (405)
                      +.|++.++. +..++.         .+++|+.|+++++ .++ .+|..+++|+.|++.+|.--  .+ ..+++|+.|+++
T Consensus       164 ~~L~L~~N~-l~~l~~---------~~~~L~~L~Ls~N-~l~-~l~~~~~~L~~L~L~~N~l~--~l~~~~~~L~~L~Ls  229 (622)
T 3g06_A          164 CKLWAYNNQ-LTSLPM---------LPSGLQELSVSDN-QLA-SLPTLPSELYKLWAYNNRLT--SLPALPSGLKELIVS  229 (622)
T ss_dssp             CEEECCSSC-CSCCCC---------CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCS--SCCCCCTTCCEEECC
T ss_pred             CEEECCCCC-CCCCcc---------cCCCCcEEECCCC-CCC-CCCCccchhhEEECcCCccc--ccCCCCCCCCEEEcc
Confidence            999998764 444432         4789999999985 566 47777899999999886421  22 235889999999


Q ss_pred             CcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccC
Q 044605          253 GFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFV  330 (405)
Q Consensus       253 ~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l  330 (405)
                      +|...     .++    ..+++|  |++++|          .++.+|.   .+++|+.|++++|.++.+|..       +
T Consensus       230 ~N~L~-----~lp----~~l~~L~~L~Ls~N----------~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~-------l  280 (622)
T 3g06_A          230 GNRLT-----SLP----VLPSELKELMVSGN----------RLTSLPM---LPSGLLSLSVYRNQLTRLPES-------L  280 (622)
T ss_dssp             SSCCS-----CCC----CCCTTCCEEECCSS----------CCSCCCC---CCTTCCEEECCSSCCCSCCGG-------G
T ss_pred             CCccC-----cCC----CCCCcCcEEECCCC----------CCCcCCc---ccccCcEEeCCCCCCCcCCHH-------H
Confidence            98544     344    233456  777776          5567776   678999999999999999876       6


Q ss_pred             CCCCCcCEEeeecCCCCcccC
Q 044605          331 RNLTSLERLELSRCPILKSFP  351 (405)
Q Consensus       331 ~~l~~L~~L~l~~c~~l~~l~  351 (405)
                      .++++|+.|++++|+..+..+
T Consensus       281 ~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          281 IHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             GGSCTTCEEECCSCCCCHHHH
T ss_pred             hhccccCEEEecCCCCCCcCH
Confidence            789999999999987654443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.64  E-value=1.1e-14  Score=129.55  Aligned_cols=193  Identities=13%  Similarity=0.114  Sum_probs=130.0

Q ss_pred             CCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CC
Q 044605          148 ENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HF  222 (405)
Q Consensus       148 ~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~  222 (405)
                      .+|+.|+++++. ++.++.  ++.+++|++|++.++..+..++.     .....+++|++|++++|..++...+.   .+
T Consensus        31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-----~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l  104 (239)
T 2xwt_C           31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLES-----HSFYNLSKVTHIEIRNTRNLTYIDPDALKEL  104 (239)
T ss_dssp             TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECT-----TTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred             CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCH-----hHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence            467788887776 666654  66778888888877654666643     01123778888888775566632222   56


Q ss_pred             CcccEEEEeccC--CccccCCCCCCcc---eEEEcCcCCccccccccccCCCCCCCCC---eeecCCCCccEEecCCCCc
Q 044605          223 SSLERIVIMSCE--QLLVSCTTLPLLC---ELEIDGFGEVAWINRPVEAGIFDSSNPG---PEKSRTEVLPWEIGSPDQE  294 (405)
Q Consensus       223 ~~L~~L~l~~c~--~l~~~l~~l~~L~---~L~l~~~~~l~~~~~~~~~~~~~~l~~L---l~l~~~~~l~l~i~~~~l~  294 (405)
                      ++|+.|+++++.  .+|. +..+++|+   +|++++|..+.    .++...|..++.|   ++++++          +++
T Consensus       105 ~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~----~i~~~~~~~l~~L~~~L~l~~n----------~l~  169 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMT----SIPVNAFQGLCNETLTLKLYNN----------GFT  169 (239)
T ss_dssp             TTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCC----EECTTTTTTTBSSEEEEECCSC----------CCC
T ss_pred             CCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchh----hcCcccccchhcceeEEEcCCC----------CCc
Confidence            778888887764  3443 66677777   88888874454    5666666666555   334343          456


Q ss_pred             ccccccCCCCCccEEEEeCC-cccccccCCCCCcccCCCC-CCcCEEeeecCCCCcccCCCCCcCCccEEeecCCcc
Q 044605          295 SLPEGLHKLSHITRISIVGS-YLVSFPKGGLESLSFVRNL-TSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPD  369 (405)
Q Consensus       295 ~lp~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~l~~l~~l-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~  369 (405)
                      .+|......++|+.|++++| .++.++...|      .++ ++|++|++++| .++.+|.. .+++|+.|++.+++.
T Consensus       170 ~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~------~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF------GGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWT  238 (239)
T ss_dssp             EECTTTTTTCEEEEEECTTCTTCCEECTTTT------TTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC--
T ss_pred             ccCHhhcCCCCCCEEEcCCCCCcccCCHHHh------hccccCCcEEECCCC-ccccCChh-HhccCceeeccCccC
Confidence            67665444488999999998 4988887654      667 89999999985 56777765 456899999988864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.64  E-value=8.8e-15  Score=136.75  Aligned_cols=239  Identities=18%  Similarity=0.156  Sum_probs=163.9

Q ss_pred             cCCCCCCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCC--CCCCC
Q 044605          118 MLKPHYGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGT--TGGDQ  194 (405)
Q Consensus       118 ~l~~~~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~--~~~~~  194 (405)
                      .+..+++|+.|++.++....+ |..+.  .+++|+.|++++|. ++.+|.- ..++|++|++.++. +..++.  ++   
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~-l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~~---  142 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKISPGAFA--PLVKLERLYLSKNQ-LKELPEK-MPKTLQELRVHENE-ITKVRKSVFN---  142 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSC-CSBCCSS-CCTTCCEEECCSSC-CCBBCHHHHT---
T ss_pred             hhccCCCCCEEECCCCcCCeeCHHHhc--CCCCCCEEECCCCc-CCccChh-hcccccEEECCCCc-ccccCHhHhc---
Confidence            355678899999888776555 66665  78889999998887 6666642 13788999988764 444432  33   


Q ss_pred             CCCCCCCcccEEeeccCcccc-ccCCC---CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCC
Q 044605          195 QAAKGFPCLRELSIINCSKLK-GRLPQ---HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGI  268 (405)
Q Consensus       195 ~~~~~~~~L~~L~l~~~~~l~-~~l~~---~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  268 (405)
                          .+++|++|+++++..-. +..+.   .+++|+.|+++++.  .+|..+.  ++|++|++++|...     .++...
T Consensus       143 ----~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~-----~~~~~~  211 (330)
T 1xku_A          143 ----GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKIT-----KVDAAS  211 (330)
T ss_dssp             ----TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCC-----EECTGG
T ss_pred             ----CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCC-----ccCHHH
Confidence                38899999998864321 12222   57889999998764  3344333  78999999988654     445557


Q ss_pred             CCCCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          269 FDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       269 ~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      +..+++|  ++++++          .++.++. .+..+++|+.|++++|.++.+|..       +..+++|++|++++|+
T Consensus       212 ~~~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-------l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          212 LKGLNNLAKLGLSFN----------SISAVDNGSLANTPHLRELHLNNNKLVKVPGG-------LADHKYIQVVYLHNNN  274 (330)
T ss_dssp             GTTCTTCCEEECCSS----------CCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-------TTTCSSCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCC----------cCceeChhhccCCCCCCEEECCCCcCccCChh-------hccCCCcCEEECCCCc
Confidence            7788888  888877          3445543 678899999999999999988876       6788999999999864


Q ss_pred             CCcccCCCCC--------cCCccEEeecCCcchHHHhhcCcccccccccccCeeEecce
Q 044605          346 ILKSFPENGL--------LPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHK  396 (405)
Q Consensus       346 ~l~~l~~~~~--------~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~  396 (405)
                       ++.++....        .+++..|++.+.|--.-.   .....+....+++.+++.++
T Consensus       275 -i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~---i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          275 -ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE---IQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             -CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG---SCGGGGTTCCCGGGEEC---
T ss_pred             -CCccChhhcCCcccccccccccceEeecCcccccc---cCccccccccceeEEEeccc
Confidence             666654321        257889999988732111   12234555677777777665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.63  E-value=2.6e-16  Score=146.09  Aligned_cols=195  Identities=23%  Similarity=0.244  Sum_probs=117.2

Q ss_pred             CCCCccEEEEEeeCCC-CCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCC-----CCccEEeecCCCCCeeeCCCCCC
Q 044605          121 PHYGLKELKVQNYGGT-KFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHL-----PLLKNLVIKGMGRMAKAGTTGGD  193 (405)
Q Consensus       121 ~~~~L~~L~l~~~~~~-~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l-----~~L~~L~l~~~~~l~~~~~~~~~  193 (405)
                      .+++|+.|++.++... ..|..+....+++|+.|++++|. ++.+|. ++.+     ++|++|+++++. +..++.    
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~----  166 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSC----  166 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCT----
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchH----
Confidence            3678889999888754 56765522378899999999887 555553 3333     889999998865 444432    


Q ss_pred             CCCCCCCCcccEEeeccCcccc------ccCCCCCCcccEEEEeccCCc-----c-ccCCCCCCcceEEEcCcCCccccc
Q 044605          194 QQAAKGFPCLRELSIINCSKLK------GRLPQHFSSLERIVIMSCEQL-----L-VSCTTLPLLCELEIDGFGEVAWIN  261 (405)
Q Consensus       194 ~~~~~~~~~L~~L~l~~~~~l~------~~l~~~~~~L~~L~l~~c~~l-----~-~~l~~l~~L~~L~l~~~~~l~~~~  261 (405)
                       .....+++|++|+++++.-..      ......+++|++|++++|.--     + ..+..+++|++|++++|....   
T Consensus       167 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---  242 (312)
T 1wwl_A          167 -EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD---  242 (312)
T ss_dssp             -TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS---
T ss_pred             -HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc---
Confidence             112248888999888864221      111246778888888776421     1 222356788888888775443   


Q ss_pred             cccccCCCCCCCCCeeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEee
Q 044605          262 RPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLEL  341 (405)
Q Consensus       262 ~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l  341 (405)
                       ..+..                               .+..+++|+.|++++|.++.+|..       +.  ++|++|++
T Consensus       243 -~~~~~-------------------------------~~~~l~~L~~L~Ls~N~l~~ip~~-------~~--~~L~~L~L  281 (312)
T 1wwl_A          243 -AAGAP-------------------------------SCDWPSQLNSLNLSFTGLKQVPKG-------LP--AKLSVLDL  281 (312)
T ss_dssp             -SCCCS-------------------------------CCCCCTTCCEEECTTSCCSSCCSS-------CC--SEEEEEEC
T ss_pred             -ccchh-------------------------------hhhhcCCCCEEECCCCccChhhhh-------cc--CCceEEEC
Confidence             11111                               233455666666666666666544       22  56666666


Q ss_pred             ecCCCCcccCCCCCcCCccEEeecCC
Q 044605          342 SRCPILKSFPENGLLPSVVYLSIYLC  367 (405)
Q Consensus       342 ~~c~~l~~l~~~~~~~~L~~L~i~~c  367 (405)
                      ++| .++.+|....+++|++|++++.
T Consensus       282 s~N-~l~~~p~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          282 SYN-RLDRNPSPDELPQVGNLSLKGN  306 (312)
T ss_dssp             CSS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred             CCC-CCCCChhHhhCCCCCEEeccCC
Confidence            664 3444444434456666666655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.61  E-value=1.5e-14  Score=135.27  Aligned_cols=242  Identities=15%  Similarity=0.099  Sum_probs=169.6

Q ss_pred             cCCCCCCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCC
Q 044605          118 MLKPHYGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQA  196 (405)
Q Consensus       118 ~l~~~~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  196 (405)
                      .+..+++|+.|++.++....+ |..+.  .+++|+.|++++|. ++.+|.-. .++|++|++.++. +..++.     ..
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~l~~~~-~~~L~~L~l~~n~-i~~~~~-----~~  142 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKIHEKAFS--PLRKLQKLYISKNH-LVEIPPNL-PSSLVELRIHDNR-IRKVPK-----GV  142 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGST--TCTTCCEEECCSSC-CCSCCSSC-CTTCCEEECCSSC-CCCCCS-----GG
T ss_pred             HhhCCCCCcEEECCCCccCccCHhHhh--CcCCCCEEECCCCc-CCccCccc-cccCCEEECCCCc-cCccCH-----hH
Confidence            466788899999998876555 55565  78999999999887 66676522 2899999998764 444433     11


Q ss_pred             CCCCCcccEEeeccCcccc-ccCCCCCC--cccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCC
Q 044605          197 AKGFPCLRELSIINCSKLK-GRLPQHFS--SLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDS  271 (405)
Q Consensus       197 ~~~~~~L~~L~l~~~~~l~-~~l~~~~~--~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  271 (405)
                      ...+++|++|+++++.--. +..+..+.  +|+.|+++++.  .+|..+.  ++|++|++++|...     .++...+..
T Consensus       143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~-----~~~~~~l~~  215 (332)
T 2ft3_A          143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQ-----AIELEDLLR  215 (332)
T ss_dssp             GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCC-----CCCTTSSTT
T ss_pred             hCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCCcCC-----ccCHHHhcC
Confidence            2348999999998864321 12333221  78888888764  3344333  79999999998655     455567888


Q ss_pred             CCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605          272 SNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK  348 (405)
Q Consensus       272 l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~  348 (405)
                      +++|  ++++++          .++.++. .+..+++|+.|++++|.++.+|..       +..+++|++|++++|+ ++
T Consensus       216 l~~L~~L~L~~N----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-------l~~l~~L~~L~l~~N~-l~  277 (332)
T 2ft3_A          216 YSKLYRLGLGHN----------QIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-------LPDLKLLQVVYLHTNN-IT  277 (332)
T ss_dssp             CTTCSCCBCCSS----------CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-------GGGCTTCCEEECCSSC-CC
T ss_pred             CCCCCEEECCCC----------cCCcCChhHhhCCCCCCEEECCCCcCeecChh-------hhcCccCCEEECCCCC-CC
Confidence            8888  888887          4455554 688999999999999999999876       6789999999999964 66


Q ss_pred             ccCCCCC--------cCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceE
Q 044605          349 SFPENGL--------LPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKL  397 (405)
Q Consensus       349 ~l~~~~~--------~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~  397 (405)
                      .++....        ..+|+.|++.++|-.....   ....+..+.+++.+.+.+++
T Consensus       278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~---~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV---QPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS---CGGGGTTBCCSTTEEC----
T ss_pred             ccChhHccccccccccccccceEeecCccccccc---Ccccccccchhhhhhccccc
Confidence            6754311        3578999999997431111   23446667888888877653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.60  E-value=8.9e-17  Score=149.58  Aligned_cols=38  Identities=11%  Similarity=-0.034  Sum_probs=30.3

Q ss_pred             CchhhheeeEEEEEccCCCCccCc-cccCCCccCcccCc
Q 044605           19 GDFTEIFVIYLILVGDLTESKEMP-LRIGKLTSLRTLTK   56 (405)
Q Consensus        19 ~~~~~~~~~L~~L~L~~~~i~~lP-~~i~~L~~L~~L~~   56 (405)
                      ..++..+++|++|++++|.++.+| ..++++++|++|++
T Consensus        27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   65 (317)
T 3o53_A           27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL   65 (317)
T ss_dssp             HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEEC
T ss_pred             HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEEC
Confidence            344445678999999999999876 56999999999974

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.60  E-value=9.6e-15  Score=133.57  Aligned_cols=196  Identities=16%  Similarity=0.233  Sum_probs=151.0

Q ss_pred             CCCccEEEEEeeCCCCCCc-ccCCCCCCCccEEEEEcCCCCCcC-C-CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFPA-WLGQSSFENLVVLRFRNCNQCTSL-P-SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK  198 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp~-~~~~~~l~~L~~L~l~~~~~~~~l-~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  198 (405)
                      .++|+.|++.++....++. .+.  .+++|+.|++++|. ++.+ + .+..+++|++|++.++..+..++.     ....
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~-----~~~~  102 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDP-----ATFH  102 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCT-----TTTT
T ss_pred             CCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCH-----HHhc
Confidence            4689999999887766654 344  78999999999987 5655 3 488899999999998865666633     1123


Q ss_pred             CCCcccEEeeccCccccccCCC---CCCcccEEEEeccC--Ccc-ccCCCCCCcceEEEcCcCCccccccccccCCCCCC
Q 044605          199 GFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QLL-VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSS  272 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l  272 (405)
                      .+++|++|+++++ .+++..+.   .+++|++|+++++.  .++ ..+..+++|++|++++|...     .++...+..+
T Consensus       103 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l  176 (285)
T 1ozn_A          103 GLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-----SVPERAFRGL  176 (285)
T ss_dssp             TCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----EECTTTTTTC
T ss_pred             CCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-----ccCHHHhcCc
Confidence            4899999999986 44433343   57899999999875  333 44778999999999998654     5666678888


Q ss_pred             CCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCC
Q 044605          273 NPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIL  347 (405)
Q Consensus       273 ~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l  347 (405)
                      ++|  ++++++.          ++.+ |..+..+++|+.|++++|.++.++...      +..+++|++|++++|+..
T Consensus       177 ~~L~~L~l~~n~----------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          177 HSLDRLLLHQNR----------VAHVHPHAFRDLGRLMTLYLFANNLSALPTEA------LAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTCCEEECCSSC----------CCEECTTTTTTCTTCCEEECCSSCCSCCCHHH------HTTCTTCCEEECCSSCEE
T ss_pred             cccCEEECCCCc----------ccccCHhHccCcccccEeeCCCCcCCcCCHHH------cccCcccCEEeccCCCcc
Confidence            888  8888873          3444 678889999999999999999887544      378899999999998754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.59  E-value=5.2e-15  Score=139.69  Aligned_cols=217  Identities=21%  Similarity=0.187  Sum_probs=150.9

Q ss_pred             CCccEEEEEeeCCCCCCc-ccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCC--CCCCCCCC
Q 044605          123 YGLKELKVQNYGGTKFPA-WLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGT--TGGDQQAA  197 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~-~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~  197 (405)
                      ++|+.|++.++....+|. .+.  .+++|+.|++++|. ++.++  .++.+++|++|+++++. +..++.  ++      
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~------  121 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQ--RCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFK------  121 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHT------
T ss_pred             ccCcEEECCCCcCcccCHHHhc--cCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhC------
Confidence            478888888877666654 344  68888888888876 55553  37788888888888764 444433  23      


Q ss_pred             CCCCcccEEeeccCccccccCCC-----CCCcccEEEEeccCCc----cccCCCCCCcceEEEcCcCCccccccccccCC
Q 044605          198 KGFPCLRELSIINCSKLKGRLPQ-----HFSSLERIVIMSCEQL----LVSCTTLPLLCELEIDGFGEVAWINRPVEAGI  268 (405)
Q Consensus       198 ~~~~~L~~L~l~~~~~l~~~l~~-----~~~~L~~L~l~~c~~l----~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  268 (405)
                       .+++|++|+++++ .+++ +|.     .+++|+.|++++|..+    +..+..+++|+.|++++|...     .+....
T Consensus       122 -~l~~L~~L~L~~n-~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~  193 (353)
T 2z80_A          122 -PLSSLTFLNLLGN-PYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-----SYEPKS  193 (353)
T ss_dssp             -TCTTCSEEECTTC-CCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----EECTTT
T ss_pred             -CCccCCEEECCCC-CCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-----ccCHHH
Confidence             3788888888875 4442 332     5788888888887433    346777888888888888654     344556


Q ss_pred             CCCCCCC--eeecCCCCccEEecCCCCccccccc-CCCCCccEEEEeCCcccccccCCCCC-------------------
Q 044605          269 FDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGL-HKLSHITRISIVGSYLVSFPKGGLES-------------------  326 (405)
Q Consensus       269 ~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~-~~l~~L~~L~l~~~~l~~l~~~~~~~-------------------  326 (405)
                      +..+++|  ++++++          .++.+|..+ ..+++|+.|++++|.++.++...+..                   
T Consensus       194 l~~l~~L~~L~l~~n----------~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~  263 (353)
T 2z80_A          194 LKSIQNVSHLILHMK----------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD  263 (353)
T ss_dssp             TTTCSEEEEEEEECS----------CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred             HhccccCCeecCCCC----------ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence            7777777  777776          445666543 46899999999998888765332210                   


Q ss_pred             -----ccc-CCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          327 -----LSF-VRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       327 -----l~~-l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                           +|. +.++++|++|++++| .++.+|..  ..+++|++|+++++|
T Consensus       264 ~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          264 ESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence                 111 456789999999987 56778765  456799999999885

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.56  E-value=1.8e-13  Score=125.40  Aligned_cols=195  Identities=18%  Similarity=0.206  Sum_probs=107.7

Q ss_pred             CCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCC
Q 044605          119 LKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQA  196 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  196 (405)
                      +..+++++.+++.++....+|..+    .++++.|++++|. ++.++  .+..+++|++|++.++. +..++.       
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------   72 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-------   72 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-------
T ss_pred             ccccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccC-------
Confidence            344566777777766666666543    2567778887776 44443  36677777777777653 444433       


Q ss_pred             CCCCCcccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC-
Q 044605          197 AKGFPCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG-  275 (405)
Q Consensus       197 ~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L-  275 (405)
                      ...+++|++|+++++ .++ .+|                  ..+..+++|++|++++|...     .++.+.|..+++| 
T Consensus        73 ~~~l~~L~~L~Ls~N-~l~-~l~------------------~~~~~l~~L~~L~l~~N~l~-----~l~~~~~~~l~~L~  127 (290)
T 1p9a_G           73 DGTLPVLGTLDLSHN-QLQ-SLP------------------LLGQTLPALTVLDVSFNRLT-----SLPLGALRGLGELQ  127 (290)
T ss_dssp             CSCCTTCCEEECCSS-CCS-SCC------------------CCTTTCTTCCEEECCSSCCC-----CCCSSTTTTCTTCC
T ss_pred             CCCCCcCCEEECCCC-cCC-cCc------------------hhhccCCCCCEEECCCCcCc-----ccCHHHHcCCCCCC
Confidence            234677777777664 333 233                  23333444444444444322     2333344444444 


Q ss_pred             -eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC
Q 044605          276 -PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN  353 (405)
Q Consensus       276 -l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~  353 (405)
                       |+++++          +++.+|. .+..+++|+.|++++|+++.+|...|      .++++|++|++++| .++.+|..
T Consensus       128 ~L~L~~N----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~------~~l~~L~~L~L~~N-~l~~ip~~  190 (290)
T 1p9a_G          128 ELYLKGN----------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL------NGLENLDTLLLQEN-SLYTIPKG  190 (290)
T ss_dssp             EEECTTS----------CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT------TTCTTCCEEECCSS-CCCCCCTT
T ss_pred             EEECCCC----------CCCccChhhcccccCCCEEECCCCcCCccCHHHh------cCcCCCCEEECCCC-cCCccChh
Confidence             444443          2233433 34566666666666666666665433      45666666666664 34556554


Q ss_pred             -CCcCCccEEeecCCc
Q 044605          354 -GLLPSVVYLSIYLCP  368 (405)
Q Consensus       354 -~~~~~L~~L~i~~c~  368 (405)
                       ....+|+.+++.+.|
T Consensus       191 ~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          191 FFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TTTTCCCSEEECCSCC
T ss_pred             hcccccCCeEEeCCCC
Confidence             223466666666543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.56  E-value=4.8e-14  Score=125.47  Aligned_cols=191  Identities=16%  Similarity=0.148  Sum_probs=146.1

Q ss_pred             CCccEEEEEeeCCCCCCc-ccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605          123 YGLKELKVQNYGGTKFPA-WLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG  199 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~-~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  199 (405)
                      .+++.|++.++....+|. .+.  .+++|+.|++++|..++.++.  +..+++|++|++.+|+.+..++.     .....
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-----~~f~~  103 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-----DALKE  103 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-----TSEEC
T ss_pred             CcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-----HHhCC
Confidence            479999999988777765 344  689999999999976777763  77899999999998667777764     11224


Q ss_pred             CCcccEEeeccCccccccCCC--CCCccc---EEEEeccCCc---c-ccCCCCCCcc-eEEEcCcCCccccccccccCCC
Q 044605          200 FPCLRELSIINCSKLKGRLPQ--HFSSLE---RIVIMSCEQL---L-VSCTTLPLLC-ELEIDGFGEVAWINRPVEAGIF  269 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~~--~~~~L~---~L~l~~c~~l---~-~~l~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~  269 (405)
                      +++|++|+++++ .++ .+|.  .+++|+   .|+++++..+   + ..|..+++|+ .|++++|...     .++...+
T Consensus       104 l~~L~~L~l~~n-~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-----~i~~~~~  176 (239)
T 2xwt_C          104 LPLLKFLGIFNT-GLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-----SVQGYAF  176 (239)
T ss_dssp             CTTCCEEEEEEE-CCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-----EECTTTT
T ss_pred             CCCCCEEeCCCC-CCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-----ccCHhhc
Confidence            899999999986 455 3553  567777   9999988433   3 4578899999 9999998654     5666666


Q ss_pred             CCCCCC--eeecCCCCccEEecCCCCccccc-ccCCC-CCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          270 DSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKL-SHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       270 ~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l-~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      .. ++|  ++++++..         ++.+|. .+..+ ++|+.|++++|.++.+|..         .+++|+.|++.++.
T Consensus       177 ~~-~~L~~L~L~~n~~---------l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---------~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKY---------LTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---------GLEHLKELIARNTW  237 (239)
T ss_dssp             TT-CEEEEEECTTCTT---------CCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---------TCTTCSEEECTTC-
T ss_pred             CC-CCCCEEEcCCCCC---------cccCCHHHhhccccCCcEEECCCCccccCChh---------HhccCceeeccCcc
Confidence            55 677  88877732         356654 67788 9999999999999999865         46899999998875


Q ss_pred             C
Q 044605          346 I  346 (405)
Q Consensus       346 ~  346 (405)
                      .
T Consensus       238 ~  238 (239)
T 2xwt_C          238 T  238 (239)
T ss_dssp             -
T ss_pred             C
Confidence            4

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.55  E-value=4e-13  Score=126.59  Aligned_cols=211  Identities=19%  Similarity=0.180  Sum_probs=133.4

Q ss_pred             CCccEEEEEeeCCCCCCcc-cCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605          123 YGLKELKVQNYGGTKFPAW-LGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG  199 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~~-~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  199 (405)
                      .++++|++.++....+|.. +.  .+++|+.|++++|...+.+|.  +..++++.++.+.+++.+..++.     .....
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-----~~f~~  102 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-----EAFQN  102 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT-----TSBCC
T ss_pred             CCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc-----hhhhh
Confidence            5677777777766666643 33  567777777777764444543  55666666655555555666643     01123


Q ss_pred             CCcccEEeeccCccccccCCC----CCCcccEEEEeccCCc----cccCCCC-CCcceEEEcCcCCccccccccccCCCC
Q 044605          200 FPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSCEQL----LVSCTTL-PLLCELEIDGFGEVAWINRPVEAGIFD  270 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c~~l----~~~l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~  270 (405)
                      +++|++|+++++ .++. ++.    ...++..+++.++..+    +..|..+ ..++.|++++|...     .++.+.|.
T Consensus       103 l~~L~~L~l~~n-~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-----~i~~~~f~  175 (350)
T 4ay9_X          103 LPNLQYLLISNT-GIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-----EIHNSAFN  175 (350)
T ss_dssp             CTTCCEEEEEEE-CCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-----EECTTSST
T ss_pred             cccccccccccc-cccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-----CCChhhcc
Confidence            677777777664 3432 222    2344556666555443    1233333 35677777766443     34444443


Q ss_pred             CCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCC
Q 044605          271 SSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIL  347 (405)
Q Consensus       271 ~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l  347 (405)
                      . .++  +.+.+         ++.++.+|. .+..+++|+.|++++|+++.+|..         .+.+|+.|.+.+++.+
T Consensus       176 ~-~~L~~l~l~~---------~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---------~~~~L~~L~~l~~~~l  236 (350)
T 4ay9_X          176 G-TQLDELNLSD---------NNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---------GLENLKKLRARSTYNL  236 (350)
T ss_dssp             T-EEEEEEECTT---------CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---------SCTTCCEEECTTCTTC
T ss_pred             c-cchhHHhhcc---------CCcccCCCHHHhccCcccchhhcCCCCcCccChh---------hhccchHhhhccCCCc
Confidence            2 223  44433         445678886 568999999999999999999976         3578888888888999


Q ss_pred             cccCCCCCcCCccEEeecC
Q 044605          348 KSFPENGLLPSVVYLSIYL  366 (405)
Q Consensus       348 ~~l~~~~~~~~L~~L~i~~  366 (405)
                      +.+|....+++|+.+++..
T Consensus       237 ~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          237 KKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             CCCCCTTTCCSCCEEECSC
T ss_pred             CcCCCchhCcChhhCcCCC
Confidence            9999776667999999864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.54  E-value=2.2e-13  Score=123.49  Aligned_cols=189  Identities=21%  Similarity=0.285  Sum_probs=105.1

Q ss_pred             CccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605          124 GLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP  201 (405)
Q Consensus       124 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  201 (405)
                      ..+.+++.++....+|..+    .++++.|++++|. ++.++.  +..+++|++|++.++. +..++.     .....++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~-----~~~~~l~   85 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI----PADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPA-----GIFKELK   85 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC----CTTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCT-----TTTSSCT
T ss_pred             CCCEEEccCCCCCccCCCC----CCCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeCh-----hhhcCCC
Confidence            4566666666666666543    2578888888876 666653  7778888888887753 444433     0112377


Q ss_pred             cccEEeeccCccccccCC----CCCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCC
Q 044605          202 CLRELSIINCSKLKGRLP----QHFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNP  274 (405)
Q Consensus       202 ~L~~L~l~~~~~l~~~l~----~~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~  274 (405)
                      +|++|+++++ .+.+ ++    ..+++|+.|+++++.  .+ +..|..+++|++|++++|...     .++...      
T Consensus        86 ~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~------  152 (270)
T 2o6q_A           86 NLETLWVTDN-KLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-----SLPKGV------  152 (270)
T ss_dssp             TCCEEECCSS-CCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----CCCTTT------
T ss_pred             CCCEEECCCC-cCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-----ccCHhH------
Confidence            8888888775 3442 33    135566666666543  12 233455666666666665322     223322      


Q ss_pred             CeeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-
Q 044605          275 GPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-  353 (405)
Q Consensus       275 Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-  353 (405)
                                               +..+++|+.|++++|.++.++...|      .++++|++|++++| .++.++.. 
T Consensus       153 -------------------------~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~  200 (270)
T 2o6q_A          153 -------------------------FDKLTSLKELRLYNNQLKRVPEGAF------DKLTELKTLKLDNN-QLKRVPEGA  200 (270)
T ss_dssp             -------------------------TTTCTTCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSS-CCSCCCTTT
T ss_pred             -------------------------ccCCcccceeEecCCcCcEeChhHh------ccCCCcCEEECCCC-cCCcCCHHH
Confidence                                     4455555555555555555554332      44555555555554 33444432 


Q ss_pred             -CCcCCccEEeecCCc
Q 044605          354 -GLLPSVVYLSIYLCP  368 (405)
Q Consensus       354 -~~~~~L~~L~i~~c~  368 (405)
                       ..+++|+.|+++++|
T Consensus       201 ~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             hccccCCCEEEecCCC
Confidence             223455555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.54  E-value=1.1e-13  Score=126.87  Aligned_cols=174  Identities=21%  Similarity=0.234  Sum_probs=114.3

Q ss_pred             CCCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGF  200 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  200 (405)
                      .++++.|++.++....++ ..+.  .+++|+.|++++|. ++.++..+.+++|++|+++++. +..++.      ....+
T Consensus        30 ~~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~------~~~~l   99 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLPL------LGQTL   99 (290)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSCCC------CTTTC
T ss_pred             CCCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc-CCcCch------hhccC
Confidence            368999999998866553 4455  78999999999987 7778777899999999999864 555544      12347


Q ss_pred             CcccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eee
Q 044605          201 PCLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEK  278 (405)
Q Consensus       201 ~~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l  278 (405)
                      ++|++|+++++ .+++ ++.                 ..|..+++|+.|++++|...     .++.+.|..+++|  |++
T Consensus       100 ~~L~~L~l~~N-~l~~-l~~-----------------~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G          100 PALTVLDVSFN-RLTS-LPL-----------------GALRGLGELQELYLKGNELK-----TLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             TTCCEEECCSS-CCCC-CCS-----------------STTTTCTTCCEEECTTSCCC-----CCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCC-cCcc-cCH-----------------HHHcCCCCCCEEECCCCCCC-----ccChhhcccccCCCEEEC
Confidence            88899988885 4442 321                 22334444444444444322     3333344444444  444


Q ss_pred             cCCCCccEEecCCCCcccccc-cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          279 SRTEVLPWEIGSPDQESLPEG-LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       279 ~~~~~l~l~i~~~~l~~lp~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                      +++          +++.+|.. +..+++|+.|++++|.++.+|..       +...++|+.|++.+|+.
T Consensus       156 ~~N----------~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~-------~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          156 ANN----------NLTELPAGLLNGLENLDTLLLQENSLYTIPKG-------FFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TTS----------CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCCCSEEECCSCCB
T ss_pred             CCC----------cCCccCHHHhcCcCCCCEEECCCCcCCccChh-------hcccccCCeEEeCCCCc
Confidence            444          33455543 45778888888888888887776       34666788888877663

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.52  E-value=7.6e-14  Score=126.96  Aligned_cols=124  Identities=19%  Similarity=0.249  Sum_probs=64.4

Q ss_pred             CCccEEEEEeeCCCCCCc-ccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605          123 YGLKELKVQNYGGTKFPA-WLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG  199 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~-~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  199 (405)
                      ++|+.|++.++....++. .+.  .+++|+.|++++|. ++.++.  +..+++|++|+++++. +..++.     .....
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~   98 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLAL-----GAFSG   98 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECT-----TTTTT
T ss_pred             CCccEEECCCCcccccCHhHhc--cccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccCh-----hhhcC
Confidence            356666666655544433 333  46666666666664 444442  5666666666666543 333322     01123


Q ss_pred             CCcccEEeeccCccccccCC---CCCCcccEEEEeccC--C--ccccCCCCCCcceEEEcCcCC
Q 044605          200 FPCLRELSIINCSKLKGRLP---QHFSSLERIVIMSCE--Q--LLVSCTTLPLLCELEIDGFGE  256 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~---~~~~~L~~L~l~~c~--~--l~~~l~~l~~L~~L~l~~~~~  256 (405)
                      +++|++|++.++ .+.+..+   ..+++|++|+++++.  .  +|..+..+++|++|++++|..
T Consensus        99 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A           99 LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             CTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence            566666666654 2332111   145566666665543  1  344555566666666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.51  E-value=6.4e-14  Score=129.63  Aligned_cols=188  Identities=14%  Similarity=0.228  Sum_probs=132.6

Q ss_pred             CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP  201 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  201 (405)
                      +++|+.|++.++....+|. +.  .+++|+.|++++|. +..++.+..+++|++|++.++. +..++.       ...++
T Consensus        40 l~~L~~L~l~~~~i~~l~~-~~--~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------~~~l~  107 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIEG-VQ--YLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNP-LKNVSA-------IAGLQ  107 (308)
T ss_dssp             HHTCCEEECTTSCCCCCTT-GG--GCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCC-CSCCGG-------GTTCT
T ss_pred             cCCcCEEEeeCCCccCchh-hh--ccCCCCEEEccCCc-CCCChhHccCCCCCEEEccCCc-CCCchh-------hcCCC
Confidence            4568888888877666663 44  68888899988886 6667668888889998888764 444443       23378


Q ss_pred             cccEEeeccCccccccCC--CCCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--
Q 044605          202 CLRELSIINCSKLKGRLP--QHFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--  275 (405)
Q Consensus       202 ~L~~L~l~~~~~l~~~l~--~~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--  275 (405)
                      +|++|+++++ .+++ ++  ..+++|+.|++++|.  .+ ..+..+++|+.|++++|...     .++.  +..+++|  
T Consensus       108 ~L~~L~l~~n-~l~~-~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~-----~~~~--l~~l~~L~~  177 (308)
T 1h6u_A          108 SIKTLDLTST-QITD-VTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVS-----DLTP--LANLSKLTT  177 (308)
T ss_dssp             TCCEEECTTS-CCCC-CGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCC-----CCGG--GTTCTTCCE
T ss_pred             CCCEEECCCC-CCCC-chhhcCCCCCCEEECCCCccCcC-ccccCCCCccEEEccCCcCC-----CChh--hcCCCCCCE
Confidence            8888888886 3442 33  267888888888764  22 23667888888888888544     2232  6666677  


Q ss_pred             eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605          276 PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP  351 (405)
Q Consensus       276 l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~  351 (405)
                      ++++++          .++.++. +..+++|+.|++++|.++.++.        +..+++|++|++++|+ ++..|
T Consensus       178 L~l~~n----------~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--------l~~l~~L~~L~l~~N~-i~~~~  233 (308)
T 1h6u_A          178 LKADDN----------KISDISP-LASLPNLIEVHLKNNQISDVSP--------LANTSNLFIVTLTNQT-ITNQP  233 (308)
T ss_dssp             EECCSS----------CCCCCGG-GGGCTTCCEEECTTSCCCBCGG--------GTTCTTCCEEEEEEEE-EECCC
T ss_pred             EECCCC----------ccCcChh-hcCCCCCCEEEccCCccCcccc--------ccCCCCCCEEEccCCe-eecCC
Confidence            777766          3445554 6788889999998888887763        4778888899988865 34443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.51  E-value=7.2e-14  Score=129.29  Aligned_cols=184  Identities=14%  Similarity=0.158  Sum_probs=145.1

Q ss_pred             CCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC--CCC
Q 044605          146 SFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ--HFS  223 (405)
Q Consensus       146 ~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~--~~~  223 (405)
                      .+++|+.|++++|. +..++++..+++|++|+++++. +..++.       ...+++|++|+++++. +++ ++.  .++
T Consensus        39 ~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~-i~~~~~-------~~~l~~L~~L~L~~n~-l~~-~~~~~~l~  107 (308)
T 1h6u_A           39 DLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQ-ITDLAP-------LKNLTKITELELSGNP-LKN-VSAIAGLQ  107 (308)
T ss_dssp             HHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSC-CCCCGG-------GTTCCSCCEEECCSCC-CSC-CGGGTTCT
T ss_pred             HcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCc-CCCChh-------HccCCCCCEEEccCCc-CCC-chhhcCCC
Confidence            57899999999986 7888889999999999999873 444443       3348999999999964 553 443  689


Q ss_pred             cccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccc
Q 044605          224 SLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEG  299 (405)
Q Consensus       224 ~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~  299 (405)
                      +|+.|++++|.  .+ ..+..+++|++|++++|....     ++.  +..+++|  |++++|          .++.++. 
T Consensus       108 ~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~-----~~~--l~~l~~L~~L~l~~n----------~l~~~~~-  168 (308)
T 1h6u_A          108 SIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITN-----ISP--LAGLTNLQYLSIGNA----------QVSDLTP-  168 (308)
T ss_dssp             TCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCC-----CGG--GGGCTTCCEEECCSS----------CCCCCGG-
T ss_pred             CCCEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCc-----Ccc--ccCCCCccEEEccCC----------cCCCChh-
Confidence            99999999875  33 348889999999999986553     222  6677777  888887          4456665 


Q ss_pred             cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605          300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCP  368 (405)
Q Consensus       300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~  368 (405)
                      +..+++|+.|++++|.++.++.        +..+++|++|++++|. ++.++....+++|++|++++++
T Consensus       169 l~~l~~L~~L~l~~n~l~~~~~--------l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKISDISP--------LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--------GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEE
T ss_pred             hcCCCCCCEEECCCCccCcChh--------hcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCe
Confidence            8899999999999999988764        4788999999999975 5666545566799999999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.50  E-value=1.1e-12  Score=118.94  Aligned_cols=193  Identities=25%  Similarity=0.261  Sum_probs=121.9

Q ss_pred             CCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC----CCC
Q 044605          148 ENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ----HFS  223 (405)
Q Consensus       148 ~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~----~~~  223 (405)
                      .+.+.++++++. ++.+|.- -.+++++|++.++. +..++.     .....+++|++|+++++ .++ .++.    .++
T Consensus        16 ~~~~~l~~~~~~-l~~ip~~-~~~~l~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~-~i~~~~~~~l~   85 (270)
T 2o6q_A           16 NNKNSVDCSSKK-LTAIPSN-IPADTKKLDLQSNK-LSSLPS-----KAFHRLTKLRLLYLNDN-KLQ-TLPAGIFKELK   85 (270)
T ss_dssp             TTTTEEECTTSC-CSSCCSC-CCTTCSEEECCSSC-CSCCCT-----TSSSSCTTCCEEECCSS-CCS-CCCTTTTSSCT
T ss_pred             CCCCEEEccCCC-CCccCCC-CCCCCCEEECcCCC-CCeeCH-----HHhcCCCCCCEEECCCC-ccC-eeChhhhcCCC
Confidence            456778887665 6666641 12678888887764 444432     11223778888888774 344 2331    345


Q ss_pred             cccEEEEeccC--Ccc-ccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcccc-cc
Q 044605          224 SLERIVIMSCE--QLL-VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLP-EG  299 (405)
Q Consensus       224 ~L~~L~l~~c~--~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp-~~  299 (405)
                      +|++|+++++.  .++ ..+..+++|++|++++|                                     .++.+| ..
T Consensus        86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-------------------------------------~l~~~~~~~  128 (270)
T 2o6q_A           86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-------------------------------------QLKSLPPRV  128 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-------------------------------------CCCCCCTTT
T ss_pred             CCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-------------------------------------ccCeeCHHH
Confidence            55555555432  111 22334445555555443                                     223343 35


Q ss_pred             cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCcchHHHhhcC
Q 044605          300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCPDLEEKCKKD  377 (405)
Q Consensus       300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~~~~~~~  377 (405)
                      +..+++|+.|++++|.++.++...|      ..+++|++|++++| .++.++..  ..+++|++|+++++. ++.    .
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~----~  196 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQSLPKGVF------DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKR----V  196 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSC----C
T ss_pred             hCcCcCCCEEECCCCcCCccCHhHc------cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCc----C
Confidence            6799999999999999999887654      78899999999997 46667654  445799999999983 321    1


Q ss_pred             cccccccccccCeeEecceEee
Q 044605          378 EREYCHLVADIPFVQLNHKLVF  399 (405)
Q Consensus       378 ~~~~~~~i~~i~~~~~~~~~~~  399 (405)
                      ....+..+.+++.+.+.++.+.
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBC
T ss_pred             CHHHhccccCCCEEEecCCCee
Confidence            2233556788888998887653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.50  E-value=8.8e-16  Score=154.97  Aligned_cols=222  Identities=15%  Similarity=0.076  Sum_probs=124.5

Q ss_pred             ccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCc--CCC-CCCCCCccEEeecCCCCCeeeCCCCCC
Q 044605          117 EMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTS--LPS-VGHLPLLKNLVIKGMGRMAKAGTTGGD  193 (405)
Q Consensus       117 ~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~--l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~  193 (405)
                      ..+..+++|+.+.+.+.....+|..+.  .+++|++|++++|. ++.  ++. +..+++|++|++.++..-..+..    
T Consensus       264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~--~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~----  336 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMGPNEMPILFP--FAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEV----  336 (592)
T ss_dssp             SCCCCCTTCCEEEETTCCTTTGGGGGG--GGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH----
T ss_pred             HHhhccccccccCccccchhHHHHHHh--hcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHH----
Confidence            345556677777766655555565554  56777777777776 332  111 45677777777763211111111    


Q ss_pred             CCCCCCCCcccEEeecc----------Ccccccc----CCCCCCcccEEEEeccCCc----cccCCC-CCCcceEEEcC-
Q 044605          194 QQAAKGFPCLRELSIIN----------CSKLKGR----LPQHFSSLERIVIMSCEQL----LVSCTT-LPLLCELEIDG-  253 (405)
Q Consensus       194 ~~~~~~~~~L~~L~l~~----------~~~l~~~----l~~~~~~L~~L~l~~c~~l----~~~l~~-l~~L~~L~l~~-  253 (405)
                        ....+++|++|++.+          |..+++.    +...+++|++|++ .|..+    +..+.. +++|+.|++.+ 
T Consensus       337 --~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~  413 (592)
T 3ogk_B          337 --LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLL  413 (592)
T ss_dssp             --HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred             --HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence              112367788888874          5555431    1124778888887 44443    222322 77888888874 


Q ss_pred             --cCCccccccccccC-----CCCCCCCC--eeecCCCCccEEecCCCCc-cccccc-CCCCCccEEEEeCCcccc--cc
Q 044605          254 --FGEVAWINRPVEAG-----IFDSSNPG--PEKSRTEVLPWEIGSPDQE-SLPEGL-HKLSHITRISIVGSYLVS--FP  320 (405)
Q Consensus       254 --~~~l~~~~~~~~~~-----~~~~l~~L--l~l~~~~~l~l~i~~~~l~-~lp~~~-~~l~~L~~L~l~~~~l~~--l~  320 (405)
                        ++.+.    ..|.+     .+.++++|  ++++.|.+.        ++ ..+..+ ..+++|+.|+++++.+++  ++
T Consensus       414 ~~~n~l~----~~p~~~~~~~~~~~~~~L~~L~L~~~~~~--------l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  481 (592)
T 3ogk_B          414 DREERIT----DLPLDNGVRSLLIGCKKLRRFAFYLRQGG--------LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM  481 (592)
T ss_dssp             SCCSCCS----SCCCHHHHHHHHHHCTTCCEEEEECCGGG--------CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred             CCCcccc----CchHHHHHHHHHHhCCCCCEEEEecCCCC--------ccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence              33333    21111     12335555  666555320        11 112222 357888999988877654  22


Q ss_pred             cCCCCCcccCCCCCCcCEEeeecCCCCcc--cCCC-CCcCCccEEeecCCc
Q 044605          321 KGGLESLSFVRNLTSLERLELSRCPILKS--FPEN-GLLPSVVYLSIYLCP  368 (405)
Q Consensus       321 ~~~~~~l~~l~~l~~L~~L~l~~c~~l~~--l~~~-~~~~~L~~L~i~~c~  368 (405)
                      ..       +.++++|++|++++|+ +++  ++.. ..+++|++|++++|.
T Consensus       482 ~~-------~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          482 EF-------SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HH-------HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HH-------HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            21       4678889999999987 443  2221 334689999999986

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.49  E-value=3.7e-13  Score=122.15  Aligned_cols=176  Identities=19%  Similarity=0.234  Sum_probs=87.7

Q ss_pred             CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP  201 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  201 (405)
                      +++|+.|.+.++....++. +.  .+++|+.|++++|. +..++.++.+++|++|++.++. +..++.     .....++
T Consensus        40 l~~L~~L~l~~~~i~~~~~-l~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-l~~~~~-----~~~~~l~  109 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQG-IQ--YLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQ-LQSLPN-----GVFDKLT  109 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTT-GG--GCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSC-CCCCCT-----TTTTTCT
T ss_pred             ccceeeeeeCCCCcccccc-cc--cCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCc-cCccCh-----hHhcCCc
Confidence            3455555555554443332 22  45566666665554 4444455555666666665542 333222     0011255


Q ss_pred             cccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeec
Q 044605          202 CLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKS  279 (405)
Q Consensus       202 ~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~  279 (405)
                      +|++|+++++ .+++..+                  ..+..+++|++|++++|...     .++...+..+++|  ++++
T Consensus       110 ~L~~L~L~~n-~l~~~~~------------------~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A          110 NLKELVLVEN-QLQSLPD------------------GVFDKLTNLTYLNLAHNQLQ-----SLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             TCCEEECTTS-CCCCCCT------------------TTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCC-cCCccCH------------------HHhccCCCCCEEECCCCccC-----ccCHHHhccCccCCEEECC
Confidence            5555555553 2332111                  22344455555555554322     2333334444444  4444


Q ss_pred             CCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCC
Q 044605          280 RTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIL  347 (405)
Q Consensus       280 ~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l  347 (405)
                      +|          .++.+|. .+..+++|+.|++++|.++.++...+      .++++|++|++++|+..
T Consensus       166 ~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          166 YN----------QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF------DRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             SS----------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSSCBC
T ss_pred             CC----------CcCccCHHHhcCCccCCEEECCCCcCCccCHHHH------hCCcCCCEEEccCCCcc
Confidence            44          2233333 34567777777777777776665433      56677777777776543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.47  E-value=5.8e-13  Score=121.07  Aligned_cols=196  Identities=18%  Similarity=0.151  Sum_probs=141.7

Q ss_pred             CCCCcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCcc
Q 044605          136 TKFPAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSK  213 (405)
Q Consensus       136 ~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  213 (405)
                      ..+|..+    .++|++|++++|. ++.++  .+..+++|++|++.++. +..++.     .....+++|++|+++++ .
T Consensus        20 ~~ip~~l----~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~L~~n-~   87 (276)
T 2z62_A           20 YKIPDNL----PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIED-----GAYQSLSHLSTLILTGN-P   87 (276)
T ss_dssp             SSCCSSS----CTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCC-CCEECT-----TTTTTCTTCCEEECTTC-C
T ss_pred             cccCCCC----CCCccEEECCCCc-ccccCHhHhccccCCcEEECCCCc-CCccCH-----HHccCCcCCCEEECCCC-c
Confidence            4456533    3679999999987 66665  48889999999999874 555543     11234899999999986 4


Q ss_pred             ccccCCC---CCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccc-cCCCCCCCCC--eeecCCCCc
Q 044605          214 LKGRLPQ---HFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVE-AGIFDSSNPG--PEKSRTEVL  284 (405)
Q Consensus       214 l~~~l~~---~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~~~l~~L--l~l~~~~~l  284 (405)
                      +++..+.   .+++|+.|++.++.  .+ +..+..+++|++|++++|....     +. +..+..+++|  ++++++   
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~l~~~~~~l~~L~~L~Ls~N---  159 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-----FKLPEYFSNLTNLEHLDLSSN---  159 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-----CCCCGGGGGCTTCCEEECCSS---
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce-----ecCchhhccCCCCCEEECCCC---
Confidence            4433332   67899999998875  23 3357889999999999986542     22 4467778888  888887   


Q ss_pred             cEEecCCCCcccc-cccCCCCCcc----EEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcC
Q 044605          285 PWEIGSPDQESLP-EGLHKLSHIT----RISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLP  357 (405)
Q Consensus       285 ~l~i~~~~l~~lp-~~~~~l~~L~----~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~  357 (405)
                             .++.++ ..+..+++|+    .|++++|.++.++...+       ...+|++|++++|. ++.++..  ...+
T Consensus       160 -------~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-------~~~~L~~L~L~~n~-l~~~~~~~~~~l~  224 (276)
T 2z62_A          160 -------KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-------KEIRLKELALDTNQ-LKSVPDGIFDRLT  224 (276)
T ss_dssp             -------CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-------CSCCEEEEECCSSC-CSCCCTTTTTTCC
T ss_pred             -------CCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-------CCCcccEEECCCCc-eeecCHhHhcccc
Confidence                   344444 3455555555    88999999999887633       44589999999975 6777764  4467


Q ss_pred             CccEEeecC
Q 044605          358 SVVYLSIYL  366 (405)
Q Consensus       358 ~L~~L~i~~  366 (405)
                      +|++|++++
T Consensus       225 ~L~~L~l~~  233 (276)
T 2z62_A          225 SLQKIWLHT  233 (276)
T ss_dssp             SCCEEECCS
T ss_pred             cccEEEccC
Confidence            999999994

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.46  E-value=2.4e-13  Score=133.88  Aligned_cols=212  Identities=12%  Similarity=0.048  Sum_probs=157.5

Q ss_pred             CCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCC
Q 044605          146 SFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFS  223 (405)
Q Consensus       146 ~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~  223 (405)
                      .+++|+.|++++|. ++.++  .++.+++|++|+++++. +...+.++       .+++|++|+++++ .+++ +| ..+
T Consensus        32 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~-------~l~~L~~L~Ls~N-~l~~-l~-~~~   99 (487)
T 3oja_A           32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLDLE-------SLSTLRTLDLNNN-YVQE-LL-VGP   99 (487)
T ss_dssp             TGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSC-CEEEEECT-------TCTTCCEEECCSS-EEEE-EE-ECT
T ss_pred             cCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccc-------cCCCCCEEEecCC-cCCC-CC-CCC
Confidence            34589999999987 66665  48899999999999875 44333333       4899999999996 5663 44 348


Q ss_pred             cccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcc-ccccc
Q 044605          224 SLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQES-LPEGL  300 (405)
Q Consensus       224 ~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~-lp~~~  300 (405)
                      +|+.|++++|.--......+++|+.|++++|...     .+++..+..+++|  |+++++          .++. .|..+
T Consensus       100 ~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N----------~l~~~~~~~l  164 (487)
T 3oja_A          100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKIT-----MLRDLDEGCRSRVQYLDLKLN----------EIDTVNFAEL  164 (487)
T ss_dssp             TCCEEECCSSCCCCEEECCCSSCEEEECCSSCCC-----SGGGBCGGGGSSEEEEECTTS----------CCCEEEGGGG
T ss_pred             CcCEEECcCCcCCCCCccccCCCCEEECCCCCCC-----CCCchhhcCCCCCCEEECCCC----------CCCCcChHHH
Confidence            9999999987633222345789999999999765     3445567777788  888887          3343 45566


Q ss_pred             C-CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCcchHHHhhcCc
Q 044605          301 H-KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCPDLEEKCKKDE  378 (405)
Q Consensus       301 ~-~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~  378 (405)
                      . .+++|+.|++++|.++.++..        ..+++|++|++++|. ++.+|.. ..+++|+.|+++++. +..     -
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~~~~~--------~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~-----l  229 (487)
T 3oja_A          165 AASSDTLEHLNLQYNFIYDVKGQ--------VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVL-----I  229 (487)
T ss_dssp             GGGTTTCCEEECTTSCCCEEECC--------CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCE-----E
T ss_pred             hhhCCcccEEecCCCcccccccc--------ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-Ccc-----c
Confidence            5 799999999999999988654        568999999999975 6667655 556799999999984 211     1


Q ss_pred             ccccccccccCeeEecceEee
Q 044605          379 REYCHLVADIPFVQLNHKLVF  399 (405)
Q Consensus       379 ~~~~~~i~~i~~~~~~~~~~~  399 (405)
                      ...+....+++.+.+.++.+.
T Consensus       230 p~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          230 EKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CTTCCCCTTCCEEECTTCCBC
T ss_pred             chhhccCCCCCEEEcCCCCCc
Confidence            223455678888888887664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.44  E-value=4.1e-13  Score=121.89  Aligned_cols=175  Identities=15%  Similarity=0.094  Sum_probs=119.1

Q ss_pred             cCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCC
Q 044605          118 MLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQ  195 (405)
Q Consensus       118 ~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  195 (405)
                      .+..+++|+.|++.++....++ .+.  .+++|+.|++++|. ++.++.  ++.+++|++|++.++. +..++.     .
T Consensus        58 ~l~~l~~L~~L~l~~n~l~~~~-~l~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~  127 (272)
T 3rfs_A           58 GIQYLPNVRYLALGGNKLHDIS-ALK--ELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQ-LQSLPD-----G  127 (272)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCG-GGT--TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCT-----T
T ss_pred             ccccCCCCcEEECCCCCCCCch-hhc--CCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCc-CCccCH-----H
Confidence            4566889999999998876654 344  78999999999987 666665  7899999999999875 444433     1


Q ss_pred             CCCCCCcccEEeeccCccccccCCC---CCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCC
Q 044605          196 AAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIF  269 (405)
Q Consensus       196 ~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  269 (405)
                      ....+++|++|+++++ .+++..+.   .+++|+.|++++|.  .+ +..+..+++|++|++++|..             
T Consensus       128 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-------------  193 (272)
T 3rfs_A          128 VFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-------------  193 (272)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-------------
T ss_pred             HhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC-------------
Confidence            1234889999999886 55532221   35566666666553  12 22244555666666655532             


Q ss_pred             CCCCCCeeecCCCCccEEecCCCCcccc-cccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605          270 DSSNPGPEKSRTEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK  348 (405)
Q Consensus       270 ~~l~~Ll~l~~~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~  348 (405)
                                              +.+| ..+..+++|+.|++++|.+.             +.++.|+.|+++.|....
T Consensus       194 ------------------------~~~~~~~~~~l~~L~~L~l~~N~~~-------------~~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          194 ------------------------KSVPDGVFDRLTSLQYIWLHDNPWD-------------CTCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             ------------------------SCCCTTTTTTCTTCCEEECCSSCBC-------------CCTTTTHHHHHHHHHTGG
T ss_pred             ------------------------CccCHHHHhCCcCCCEEEccCCCcc-------------ccCcHHHHHHHHHHhCCC
Confidence                                    2333 34678899999999987653             346788888888877666


Q ss_pred             ccCCC
Q 044605          349 SFPEN  353 (405)
Q Consensus       349 ~l~~~  353 (405)
                      .+|..
T Consensus       237 ~ip~~  241 (272)
T 3rfs_A          237 VVRNS  241 (272)
T ss_dssp             GBBCT
T ss_pred             cccCc
Confidence            77754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.42  E-value=9.6e-16  Score=149.88  Aligned_cols=267  Identities=14%  Similarity=0.039  Sum_probs=124.6

Q ss_pred             HhccCCCCCCccEEEEEeeCCCCC-Cc----ccCCCCCCCccEEEEEcCCCCCcC-----C-CCCCCCCccEEeecCCCC
Q 044605          115 VLEMLKPHYGLKELKVQNYGGTKF-PA----WLGQSSFENLVVLRFRNCNQCTSL-----P-SVGHLPLLKNLVIKGMGR  183 (405)
Q Consensus       115 ~~~~l~~~~~L~~L~l~~~~~~~l-p~----~~~~~~l~~L~~L~l~~~~~~~~l-----~-~l~~l~~L~~L~l~~~~~  183 (405)
                      +...+..+++|+.|++.++..... +.    .+. ...++|++|++++|. ++..     + .+..+++|++|++.++. 
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-  181 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL-DPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-  181 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHh-cCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-
Confidence            344455566666666665543211 11    111 123456666666664 3321     1 13345666666666654 


Q ss_pred             CeeeCC--CCCCCCCCCCCCcccEEeeccCcccccc----CCC---CCCcccEEEEeccCCc--------cccCCCCCCc
Q 044605          184 MAKAGT--TGGDQQAAKGFPCLRELSIINCSKLKGR----LPQ---HFSSLERIVIMSCEQL--------LVSCTTLPLL  246 (405)
Q Consensus       184 l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~----l~~---~~~~L~~L~l~~c~~l--------~~~l~~l~~L  246 (405)
                      +...+.  ++.  ......++|++|++++| .+.+.    ++.   .+++|++|++++|.--        +..+..+++|
T Consensus       182 i~~~~~~~l~~--~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L  258 (461)
T 1z7x_W          182 INEAGVRVLCQ--GLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL  258 (461)
T ss_dssp             CHHHHHHHHHH--HHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred             cchHHHHHHHH--HHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence            221110  000  00001346677777665 23211    121   3566777777665311        1122346677


Q ss_pred             ceEEEcCcCCcccccc-ccccCCCCCCCCC--eeecCCCCccEEecCCCCccccccc-CCCCCccEEEEeCCcccccccC
Q 044605          247 CELEIDGFGEVAWINR-PVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGL-HKLSHITRISIVGSYLVSFPKG  322 (405)
Q Consensus       247 ~~L~l~~~~~l~~~~~-~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~-~~l~~L~~L~l~~~~l~~l~~~  322 (405)
                      ++|++++|..... +. .++ ..+..+++|  ++++++....     .....+...+ ...++|+.|++++|.++.... 
T Consensus       259 ~~L~L~~n~l~~~-~~~~l~-~~l~~~~~L~~L~Ls~n~i~~-----~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-  330 (461)
T 1z7x_W          259 RTLWIWECGITAK-GCGDLC-RVLRAKESLKELSLAGNELGD-----EGARLLCETLLEPGCQLESLWVKSCSFTAACC-  330 (461)
T ss_dssp             CEEECTTSCCCHH-HHHHHH-HHHHHCTTCCEEECTTCCCHH-----HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-
T ss_pred             eEEECcCCCCCHH-HHHHHH-HHHhhCCCcceEECCCCCCch-----HHHHHHHHHhccCCccceeeEcCCCCCchHHH-
Confidence            7777776633210 00 011 123334455  5665552110     0000111122 133577777777766654210 


Q ss_pred             CCCCccc-CCCCCCcCEEeeecCCCCcccC-C----C--CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEec
Q 044605          323 GLESLSF-VRNLTSLERLELSRCPILKSFP-E----N--GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLN  394 (405)
Q Consensus       323 ~~~~l~~-l~~l~~L~~L~l~~c~~l~~l~-~----~--~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~  394 (405)
                        ..++. +..+++|++|++++|. +++.. .    .  ...++|++|++++|. +.......-...+....+++.+.+.
T Consensus       331 --~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          331 --SHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             --HHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             --HHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECC
Confidence              00110 4556788888888874 44331 1    1  113588888888883 3321111112233446788888888


Q ss_pred             ceEee
Q 044605          395 HKLVF  399 (405)
Q Consensus       395 ~~~~~  399 (405)
                      ++.|.
T Consensus       407 ~N~i~  411 (461)
T 1z7x_W          407 NNCLG  411 (461)
T ss_dssp             SSSCC
T ss_pred             CCCCC
Confidence            87664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.42  E-value=1.1e-14  Score=136.24  Aligned_cols=196  Identities=14%  Similarity=0.155  Sum_probs=111.5

Q ss_pred             CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCc--CCC-CCCCCCccEEeecCCCCCeeeCC-CCCCCCCCC
Q 044605          123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTS--LPS-VGHLPLLKNLVIKGMGRMAKAGT-TGGDQQAAK  198 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~--l~~-l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~  198 (405)
                      .+++.+++.++.....+..+.  .+++|++|++++|. +..  ++. +..+++|++|++.+|.-....+. ++       
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-------  139 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-------  139 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCC--CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-------
T ss_pred             ccceEEEcCCccccccchhhc--cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-------
Confidence            467777777665443333344  57888888888876 332  443 66788888888887742222222 22       


Q ss_pred             CCCcccEEeeccCcccccc-CCC---CCCcccEEEEeccCCc-----cccCCCCC-CcceEEEcCcC-CccccccccccC
Q 044605          199 GFPCLRELSIINCSKLKGR-LPQ---HFSSLERIVIMSCEQL-----LVSCTTLP-LLCELEIDGFG-EVAWINRPVEAG  267 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~~-l~~---~~~~L~~L~l~~c~~l-----~~~l~~l~-~L~~L~l~~~~-~l~~~~~~~~~~  267 (405)
                      .+++|++|++++|..+++. ++.   .+++|++|++++|..+     +..+..++ +|++|++++|. .+...  .++ .
T Consensus       140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~--~l~-~  216 (336)
T 2ast_B          140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS--DLS-T  216 (336)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH--HHH-H
T ss_pred             cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH--HHH-H
Confidence            2788888888887655531 332   5788888888887433     34455678 88888888874 22100  111 1


Q ss_pred             CCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecC
Q 044605          268 IFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRC  344 (405)
Q Consensus       268 ~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c  344 (405)
                      .+..+++|  +++++|..++        ...+..+..+++|+.|+++++.  .+...++   ..+.++++|++|++++|
T Consensus       217 ~~~~~~~L~~L~l~~~~~l~--------~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~---~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          217 LVRRCPNLVHLDLSDSVMLK--------NDCFQEFFQLNYLQHLSLSRCY--DIIPETL---LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHHHCTTCSEEECTTCTTCC--------GGGGGGGGGCTTCCEEECTTCT--TCCGGGG---GGGGGCTTCCEEECTTS
T ss_pred             HHhhCCCCCEEeCCCCCcCC--------HHHHHHHhCCCCCCEeeCCCCC--CCCHHHH---HHHhcCCCCCEEeccCc
Confidence            22334445  5555553221        1334455566666666666642  1111111   11345666666666665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.41  E-value=6.2e-13  Score=123.22  Aligned_cols=204  Identities=16%  Similarity=0.137  Sum_probs=121.3

Q ss_pred             CCCCccEEEEEcCCCCCcCCC-C--CCCCCccEEeecCCCCCeeeCC-CCCCCCCCCCCCcccEEeeccCccccccCCC-
Q 044605          146 SFENLVVLRFRNCNQCTSLPS-V--GHLPLLKNLVIKGMGRMAKAGT-TGGDQQAAKGFPCLRELSIINCSKLKGRLPQ-  220 (405)
Q Consensus       146 ~l~~L~~L~l~~~~~~~~l~~-l--~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~-  220 (405)
                      .+++|++|++++|.-...+|. +  +.+++|++|+++++. +..++. ++.  .....+++|++|+++++ .+.+..+. 
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~--l~~~~~~~L~~L~L~~N-~l~~~~~~~  168 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAE--LQQWLKPGLKVLSIAQA-HSLNFSCEQ  168 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHH--HHTTCCTTCCEEEEESC-SCCCCCTTT
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHH--HHHhhcCCCcEEEeeCC-CCccchHHH
Confidence            367888888888873334554 3  678888888887754 332222 111  00001266666666664 33322221 


Q ss_pred             --CCCcccEEEEeccCCc-----cccC--CCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCC
Q 044605          221 --HFSSLERIVIMSCEQL-----LVSC--TTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSP  291 (405)
Q Consensus       221 --~~~~L~~L~l~~c~~l-----~~~l--~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~  291 (405)
                        .+++|++|+++++.-.     +..+  ..+++|++|++++|....                                 
T Consensus       169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------------------  215 (312)
T 1wwl_A          169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET---------------------------------  215 (312)
T ss_dssp             CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC---------------------------------
T ss_pred             hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc---------------------------------
Confidence              3455555555544311     1122  444555555555442110                                 


Q ss_pred             CCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCcch
Q 044605          292 DQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDL  370 (405)
Q Consensus       292 ~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l  370 (405)
                       +..++. .+.++++|+.|++++|.++..+....     +..+++|++|++++|. ++.+|.... ++|++|+++++. +
T Consensus       216 -~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~-l  286 (312)
T 1wwl_A          216 -PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-----CDWPSQLNSLNLSFTG-LKQVPKGLP-AKLSVLDLSYNR-L  286 (312)
T ss_dssp             -HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-----CCCCTTCCEEECTTSC-CSSCCSSCC-SEEEEEECCSSC-C
T ss_pred             -hHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-----hhhcCCCCEEECCCCc-cChhhhhcc-CCceEEECCCCC-C
Confidence             012232 23588999999999999987552111     4668999999999975 678887533 799999999983 3


Q ss_pred             HHHhhcCcccccccccccCeeEecceEeeCC
Q 044605          371 EEKCKKDEREYCHLVADIPFVQLNHKLVFDP  401 (405)
Q Consensus       371 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~  401 (405)
                      +..      ..+....+++.+.+.++.|.+.
T Consensus       287 ~~~------p~~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          287 DRN------PSPDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CSC------CCTTTSCEEEEEECTTCTTTCC
T ss_pred             CCC------hhHhhCCCCCEEeccCCCCCCC
Confidence            221      2256678888899988877653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.40  E-value=2.4e-12  Score=119.11  Aligned_cols=195  Identities=22%  Similarity=0.217  Sum_probs=119.0

Q ss_pred             CCCccEEEEEeeCCC-CCCcccCCCCCCCccEEEEEcCCCCCcCCC-----CCCCCCccEEeecCCCCCeeeCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGT-KFPAWLGQSSFENLVVLRFRNCNQCTSLPS-----VGHLPLLKNLVIKGMGRMAKAGTTGGDQQ  195 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~-~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-----l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  195 (405)
                      +++|++|++.++... ..|..+....+++|+.|++++|......+.     +..+++|++|++.++.- ..++.     .
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~-----~  163 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSC-----E  163 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCT-----T
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhH-----H
Confidence            355899999887653 445444113688899999998873333332     34688899999887653 33322     1


Q ss_pred             CCCCCCcccEEeeccCcccc------ccCCCCCCcccEEEEeccCC--ccc----cCCCCCCcceEEEcCcCCccccccc
Q 044605          196 AAKGFPCLRELSIINCSKLK------GRLPQHFSSLERIVIMSCEQ--LLV----SCTTLPLLCELEIDGFGEVAWINRP  263 (405)
Q Consensus       196 ~~~~~~~L~~L~l~~~~~l~------~~l~~~~~~L~~L~l~~c~~--l~~----~l~~l~~L~~L~l~~~~~l~~~~~~  263 (405)
                      ....+++|++|+++++.-..      ......+++|++|++++|.-  ++.    .+..+++|++|++++|....     
T Consensus       164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-----  238 (310)
T 4glp_A          164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA-----  238 (310)
T ss_dssp             SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC-----
T ss_pred             HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc-----
Confidence            12247888888888864221      01123567777777777642  122    13456777777777764432     


Q ss_pred             cccCCCCCCCCCeeecCCCCccEEecCCCCcccccccCC---CCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEe
Q 044605          264 VEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHK---LSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLE  340 (405)
Q Consensus       264 ~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~---l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~  340 (405)
                                                     ..|..+..   +++|+.|++++|+++.+|..       +  .++|++|+
T Consensus       239 -------------------------------~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-------~--~~~L~~L~  278 (310)
T 4glp_A          239 -------------------------------TVNPSAPRCMWSSALNSLNLSFAGLEQVPKG-------L--PAKLRVLD  278 (310)
T ss_dssp             -------------------------------CCCSCCSSCCCCTTCCCEECCSSCCCSCCSC-------C--CSCCSCEE
T ss_pred             -------------------------------cchhhHHhccCcCcCCEEECCCCCCCchhhh-------h--cCCCCEEE
Confidence                                           11333333   36777788877777777654       2  26777888


Q ss_pred             eecCCCCcccCCCCCcCCccEEeecCCc
Q 044605          341 LSRCPILKSFPENGLLPSVVYLSIYLCP  368 (405)
Q Consensus       341 l~~c~~l~~l~~~~~~~~L~~L~i~~c~  368 (405)
                      +++| .++.+|....+++|+.|++++++
T Consensus       279 Ls~N-~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          279 LSSN-RLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred             CCCC-cCCCCchhhhCCCccEEECcCCC
Confidence            8775 35555544445677777777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.39  E-value=7e-12  Score=112.28  Aligned_cols=172  Identities=21%  Similarity=0.274  Sum_probs=93.4

Q ss_pred             CccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605          124 GLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP  201 (405)
Q Consensus       124 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  201 (405)
                      ..+.++..++....+|..+.    ++++.|++++|. +..++  .+..+++|++|++.++. +..++.     .....++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~----~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~l~   83 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP----ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSA-----GVFDDLT   83 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC----TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCT-----TTTTTCT
T ss_pred             CCeEEecCCCCccccCCCCC----CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCH-----hHhccCC
Confidence            34556666666666665443    567777777766 44443  26667777777777653 333322     0112366


Q ss_pred             cccEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeec
Q 044605          202 CLRELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKS  279 (405)
Q Consensus       202 ~L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~  279 (405)
                      +|++|+++++ .+++ ++                 +..|..+++|++|++++|...     .++...|..+++|  |+++
T Consensus        84 ~L~~L~L~~n-~l~~-~~-----------------~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           84 ELGTLGLANN-QLAS-LP-----------------LGVFDHLTQLDKLYLGGNQLK-----SLPSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             TCCEEECTTS-CCCC-CC-----------------TTTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCC-cccc-cC-----------------hhHhcccCCCCEEEcCCCcCC-----CcChhHhccCCcccEEECc
Confidence            6777776664 3332 22                 123344555555555555322     2333333334444  4443


Q ss_pred             CCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          280 RTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       280 ~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                      ++          +++.+|. .+..+++|+.|++++|.++.++...|      .++++|++|++++|+.
T Consensus       140 ~N----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          140 TN----------QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF------DRLGKLQTITLFGNQF  191 (251)
T ss_dssp             SS----------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSCCB
T ss_pred             CC----------cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH------hCCCCCCEEEeeCCce
Confidence            33          2234443 45667777777777777776665433      5666777777777653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.39  E-value=5.9e-15  Score=138.15  Aligned_cols=44  Identities=18%  Similarity=0.358  Sum_probs=26.5

Q ss_pred             ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605          299 GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP  351 (405)
Q Consensus       299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~  351 (405)
                      .+.++++|+.|+++++    +++.++..+.     ..+..|++++|...+..|
T Consensus       267 ~l~~~~~L~~L~l~~~----i~~~~~~~l~-----~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI----VPDGTLQLLK-----EALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             GGGGCTTCCEEECTTS----SCTTCHHHHH-----HHSTTSEESCCCSCCTTC
T ss_pred             HHhcCCCCCEEeccCc----cCHHHHHHHH-----hhCcceEEecccCccccC
Confidence            4667899999999987    5554432222     235566676654433344

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.38  E-value=1.1e-11  Score=116.64  Aligned_cols=214  Identities=16%  Similarity=0.182  Sum_probs=159.9

Q ss_pred             cEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcc
Q 044605          126 KELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCL  203 (405)
Q Consensus       126 ~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L  203 (405)
                      +.++-.++....+|..+    .+++++|++++|. ++.+|.  +..+++|++|+++++...+.++.     .....++++
T Consensus        12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~-----~~f~~L~~l   81 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL----PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-----DVFSNLPKL   81 (350)
T ss_dssp             TEEEEESTTCCSCCTTC----CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECT-----TSBCSCTTC
T ss_pred             CEEEecCCCCCccCcCc----CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccCh-----hHhhcchhh
Confidence            34555555667778644    3789999999987 888875  88999999999999876677754     111237788


Q ss_pred             cEEeeccCccccccCCC---CCCcccEEEEeccC--Ccc-ccCCCCCCcceEEEcCcCCccccccccccCCCCCCCC-C-
Q 044605          204 RELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QLL-VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNP-G-  275 (405)
Q Consensus       204 ~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~-L-  275 (405)
                      .++.+.++..++...|.   .+++|+.|+++++.  .++ ..+.....+..|++.++..+.    .++...|..+.. + 
T Consensus        82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~----~l~~~~f~~~~~~l~  157 (350)
T 4ay9_X           82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH----TIERNSFVGLSFESV  157 (350)
T ss_dssp             CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC----EECTTSSTTSBSSCE
T ss_pred             hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc----cccccchhhcchhhh
Confidence            87776666677743343   57899999999875  222 234456678899998887776    777777776653 3 


Q ss_pred             -eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeC-CcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC
Q 044605          276 -PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN  353 (405)
Q Consensus       276 -l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~-~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~  353 (405)
                       ++++++          +++.+|.......+|+.|.+.+ |.++.||.+.|      .++++|++|++++| .++.+|..
T Consensus       158 ~L~L~~N----------~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f------~~l~~L~~LdLs~N-~l~~lp~~  220 (350)
T 4ay9_X          158 ILWLNKN----------GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF------HGASGPVILDISRT-RIHSLPSY  220 (350)
T ss_dssp             EEECCSS----------CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTT------TTEECCSEEECTTS-CCCCCCSS
T ss_pred             hhccccc----------cccCCChhhccccchhHHhhccCCcccCCCHHHh------ccCcccchhhcCCC-CcCccChh
Confidence             666665          6678888777788999999987 89999998765      78889999999996 68889875


Q ss_pred             CCcCCccEEeecCCcchH
Q 044605          354 GLLPSVVYLSIYLCPDLE  371 (405)
Q Consensus       354 ~~~~~L~~L~i~~c~~l~  371 (405)
                      . +.+|+.|.+.+|..++
T Consensus       221 ~-~~~L~~L~~l~~~~l~  237 (350)
T 4ay9_X          221 G-LENLKKLRARSTYNLK  237 (350)
T ss_dssp             S-CTTCCEEECTTCTTCC
T ss_pred             h-hccchHhhhccCCCcC
Confidence            4 4588888888876553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.36  E-value=3.2e-15  Score=150.91  Aligned_cols=196  Identities=17%  Similarity=0.177  Sum_probs=113.3

Q ss_pred             CCCCccEEEEEcCCCCCc--CCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeecc--------Cccc
Q 044605          146 SFENLVVLRFRNCNQCTS--LPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIIN--------CSKL  214 (405)
Q Consensus       146 ~l~~L~~L~l~~~~~~~~--l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~--------~~~l  214 (405)
                      .+++|++|++++|. ++.  ++. +..+++|++|++.+|..-..+..      ....+++|++|++.+        |..+
T Consensus       287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~------l~~~~~~L~~L~L~~~~~~g~~~~~~l  359 (594)
T 2p1m_B          287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV------LASTCKDLRELRVFPSEPFVMEPNVAL  359 (594)
T ss_dssp             HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH------HHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred             hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH------HHHhCCCCCEEEEecCcccccccCCCC
Confidence            46888999998887 443  122 45788899999887622111111      011378889998843        3333


Q ss_pred             ccc----CCCCCCcccEEEEeccCCc----cccC-CCCCCcceEEEc-----CcCCccccccccccC-C----CCCCCCC
Q 044605          215 KGR----LPQHFSSLERIVIMSCEQL----LVSC-TTLPLLCELEID-----GFGEVAWINRPVEAG-I----FDSSNPG  275 (405)
Q Consensus       215 ~~~----l~~~~~~L~~L~l~~c~~l----~~~l-~~l~~L~~L~l~-----~~~~l~~~~~~~~~~-~----~~~l~~L  275 (405)
                      ++.    +...+++|+.|.+ +|..+    ...+ ..+++|+.|++.     +|..+.    ..+.+ +    +..+++|
T Consensus       360 ~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~----~~~~~~~~~~l~~~~~~L  434 (594)
T 2p1m_B          360 TEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT----LEPLDIGFGAIVEHCKDL  434 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT----CCCTHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc----CCchhhHHHHHHhhCCCc
Confidence            321    1124788888855 44444    1222 247889999998     344443    22211 1    2334455


Q ss_pred             --eeecCCCCccEEecCCCCcccccccC-CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC-
Q 044605          276 --PEKSRTEVLPWEIGSPDQESLPEGLH-KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP-  351 (405)
Q Consensus       276 --l~l~~~~~l~l~i~~~~l~~lp~~~~-~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~-  351 (405)
                        +++++  .++        ...+..+. .+++|+.|+++++.+++..-..   +  ..++++|++|++++|+. ++.. 
T Consensus       435 ~~L~L~~--~l~--------~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~---l--~~~~~~L~~L~L~~n~~-~~~~~  498 (594)
T 2p1m_B          435 RRLSLSG--LLT--------DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH---V--LSGCDSLRKLEIRDCPF-GDKAL  498 (594)
T ss_dssp             CEEECCS--SCC--------HHHHHHHHHHCTTCCEEEEESCCSSHHHHHH---H--HHHCTTCCEEEEESCSC-CHHHH
T ss_pred             cEEeecC--ccc--------HHHHHHHHHhchhccEeeccCCCCcHHHHHH---H--HhcCCCcCEEECcCCCC-cHHHH
Confidence              55544  221        11122333 4889999999987765421110   0  24688999999999986 3321 


Q ss_pred             C-C-CCcCCccEEeecCCcc
Q 044605          352 E-N-GLLPSVVYLSIYLCPD  369 (405)
Q Consensus       352 ~-~-~~~~~L~~L~i~~c~~  369 (405)
                      . . ..+++|++|++++|+.
T Consensus       499 ~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          499 LANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHhCCCCCEEeeeCCCC
Confidence            1 1 3356999999999975

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.35  E-value=1.2e-14  Score=146.64  Aligned_cols=315  Identities=13%  Similarity=-0.042  Sum_probs=165.2

Q ss_pred             hheeeEEEEEccCCCCc-----cCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChh--hhh
Q 044605           23 EIFVIYLILVGDLTESK-----EMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAE--DAK   95 (405)
Q Consensus        23 ~~~~~L~~L~L~~~~i~-----~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~--~~~   95 (405)
                      ..+++|++|++++|.++     .++..+.++++|++|++..+...  .....+..+.+|+ .+.+..........  ...
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~--~l~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL--ELVGFFKAAANLE-EFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG--GGHHHHHHCTTCC-EEEECBCCCCTTCTTSSSC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH--HHHHHHhhhhHHH-hhcccccccccchHHHHHH
Confidence            34677888888877765     34444567777777764332111  1223344455555 55554321110000  000


Q ss_pred             hcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCC--CCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCCC
Q 044605           96 EGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTK--FPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLPL  172 (405)
Q Consensus        96 ~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~  172 (405)
                      ...+..+............+...+..+++|+.|++.++....  ++..+.  .+++|+.|++.++..-..++. ...+++
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~--~~~~L~~L~L~~~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ--KCPNLEVLETRNVIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT--TCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH--hCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence            111111111000000111122334456788999988876221  112223  688899999984432122332 245788


Q ss_pred             ccEEeecC----------CCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccC----CCCCCcccEEEEec---cCC
Q 044605          173 LKNLVIKG----------MGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRL----PQHFSSLERIVIMS---CEQ  235 (405)
Q Consensus       173 L~~L~l~~----------~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l----~~~~~~L~~L~l~~---c~~  235 (405)
                      |++|++.+          |..+.....    ......+++|++|++ .|..+++..    ...+++|+.|++.+   |..
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~----~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~  418 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGL----IALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREER  418 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHH----HHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred             CCEEEeecCccccccccccCccCHHHH----HHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence            99999984          554443211    001123789999998 444554322    22478899999985   334


Q ss_pred             ccc---------cCCCCCCcceEEEcCcCC-ccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCC
Q 044605          236 LLV---------SCTTLPLLCELEIDGFGE-VAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKL  303 (405)
Q Consensus       236 l~~---------~l~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l  303 (405)
                      +..         .+..+++|++|+++.|.. +..   .........+++|  |.+++|....        ..++..+.++
T Consensus       419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~---~~~~~~~~~~~~L~~L~L~~n~l~~--------~~~~~~~~~~  487 (592)
T 3ogk_B          419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD---LGLSYIGQYSPNVRWMLLGYVGESD--------EGLMEFSRGC  487 (592)
T ss_dssp             CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH---HHHHHHHHSCTTCCEEEECSCCSSH--------HHHHHHHTCC
T ss_pred             ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH---HHHHHHHHhCccceEeeccCCCCCH--------HHHHHHHhcC
Confidence            421         244588999999976542 110   1111111234456  6777663210        1345556789


Q ss_pred             CCccEEEEeCCcccc--cccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC---CCcCCccEEeecC
Q 044605          304 SHITRISIVGSYLVS--FPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN---GLLPSVVYLSIYL  366 (405)
Q Consensus       304 ~~L~~L~l~~~~l~~--l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~  366 (405)
                      ++|+.|++++|.++.  ++..       ..++++|++|++++|. ++.....   ...+.+....+..
T Consensus       488 ~~L~~L~l~~n~l~~~~~~~~-------~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          488 PNLQKLEMRGCCFSERAIAAA-------VTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             TTCCEEEEESCCCBHHHHHHH-------HHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred             cccCeeeccCCCCcHHHHHHH-------HHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence            999999999977653  2221       3568999999999997 4443221   2234555554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.34  E-value=3.8e-11  Score=107.48  Aligned_cols=172  Identities=22%  Similarity=0.273  Sum_probs=119.2

Q ss_pred             CCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccE
Q 044605          148 ENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLER  227 (405)
Q Consensus       148 ~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~  227 (405)
                      .+.+.++++++. ++.+|.- -.++++.|++.++. +..+..     .....+++|++|+++++ .+.+ ++        
T Consensus        14 ~~~~~l~~~~~~-l~~~p~~-~~~~l~~L~L~~n~-l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~-~~--------   75 (251)
T 3m19_A           14 EGKKEVDCQGKS-LDSVPSG-IPADTEKLDLQSTG-LATLSD-----ATFRGLTKLTWLNLDYN-QLQT-LS--------   75 (251)
T ss_dssp             GGGTEEECTTCC-CSSCCSC-CCTTCCEEECTTSC-CCCCCT-----TTTTTCTTCCEEECTTS-CCCC-CC--------
T ss_pred             CCCeEEecCCCC-ccccCCC-CCCCCCEEEccCCC-cCccCH-----hHhcCcccCCEEECCCC-cCCc-cC--------
Confidence            456667776654 5566541 12567777777654 333322     01223666666666663 3331 11        


Q ss_pred             EEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccc-cCCCC
Q 044605          228 IVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEG-LHKLS  304 (405)
Q Consensus       228 L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~-~~~l~  304 (405)
                               +..|..+++|++|++++|...     .++...|..+++|  |+++++          .++.+|.. +..++
T Consensus        76 ---------~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~N----------~l~~~~~~~~~~l~  131 (251)
T 3m19_A           76 ---------AGVFDDLTELGTLGLANNQLA-----SLPLGVFDHLTQLDKLYLGGN----------QLKSLPSGVFDRLT  131 (251)
T ss_dssp             ---------TTTTTTCTTCCEEECTTSCCC-----CCCTTTTTTCTTCCEEECCSS----------CCCCCCTTTTTTCT
T ss_pred             ---------HhHhccCCcCCEEECCCCccc-----ccChhHhcccCCCCEEEcCCC----------cCCCcChhHhccCC
Confidence                     345677889999999988655     5677778888888  888887          45667664 67999


Q ss_pred             CccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          305 HITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       305 ~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      +|+.|++++|+++.++...|      .++++|++|++++|. ++.++..  ..+++|++|++.+++
T Consensus       132 ~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          132 KLKELRLNTNQLQSIPAGAF------DKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             cccEEECcCCcCCccCHHHc------CcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence            99999999999999987554      788999999999974 5666653  456799999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.31  E-value=8.5e-12  Score=107.43  Aligned_cols=38  Identities=16%  Similarity=0.264  Sum_probs=23.2

Q ss_pred             cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      +..+++|+.|++++|.+++++ .       +.++++|++|++++|+
T Consensus       155 l~~l~~L~~L~l~~n~i~~~~-~-------l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          155 LKTLPELKSLNIQFDGVHDYR-G-------IEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             GGGCSSCCEEECTTBCCCCCT-T-------GGGCSSCCEEEECBC-
T ss_pred             hcCCCCCCEEECCCCCCcChH-H-------hccCCCCCEEEeeCcc
Confidence            456666677777666666654 1       3566667777776654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.31  E-value=2.8e-15  Score=146.62  Aligned_cols=229  Identities=16%  Similarity=0.083  Sum_probs=134.3

Q ss_pred             CCCCccEEEEEeeCCCC-----CCcccCCCCCCCccEEEEEcCCCCCcCC--CCC-----CCCCccEEeecCCCCCee--
Q 044605          121 PHYGLKELKVQNYGGTK-----FPAWLGQSSFENLVVLRFRNCNQCTSLP--SVG-----HLPLLKNLVIKGMGRMAK--  186 (405)
Q Consensus       121 ~~~~L~~L~l~~~~~~~-----lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~-----~l~~L~~L~l~~~~~l~~--  186 (405)
                      ...+|+.|++.+|....     ++..+.  .+++|++|++++|. +++..  .+.     ..++|++|++.+|. +..  
T Consensus       140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~  215 (461)
T 1z7x_W          140 PQCRLEKLQLEYCSLSAASCEPLASVLR--AKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDN  215 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHH--HCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTH
T ss_pred             CCCcceEEECCCCCCCHHHHHHHHHHHh--hCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHH
Confidence            35679999998875432     223333  46889999998887 44321  121     35689999998874 222  


Q ss_pred             ---eCCCCCCCCCCCCCCcccEEeeccCcccccc--------CCCCCCcccEEEEeccCC-------ccccCCCCCCcce
Q 044605          187 ---AGTTGGDQQAAKGFPCLRELSIINCSKLKGR--------LPQHFSSLERIVIMSCEQ-------LLVSCTTLPLLCE  248 (405)
Q Consensus       187 ---~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--------l~~~~~~L~~L~l~~c~~-------l~~~l~~l~~L~~  248 (405)
                         ++.      ....+++|++|+++++ .+.+.        +...+++|++|++++|.-       ++..+..+++|++
T Consensus       216 ~~~l~~------~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  288 (461)
T 1z7x_W          216 CRDLCG------IVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE  288 (461)
T ss_dssp             HHHHHH------HHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE
T ss_pred             HHHHHH------HHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce
Confidence               111      1113788999999886 33321        112478899999988742       2445556889999


Q ss_pred             EEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCC
Q 044605          249 LEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLES  326 (405)
Q Consensus       249 L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~  326 (405)
                      |++++|.........+........+.|  +++++|....     .....++..+..+++|+.|++++|.+++.....+  
T Consensus       289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-----~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l--  361 (461)
T 1z7x_W          289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA-----ACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL--  361 (461)
T ss_dssp             EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG-----GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH--
T ss_pred             EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch-----HHHHHHHHHHhhCCCccEEEccCCccccccHHHH--
Confidence            999988543200000111111222456  7777773221     0001245566678899999998887765321111  


Q ss_pred             ccc-CC-CCCCcCEEeeecCCCCc----ccCCC-CCcCCccEEeecCCc
Q 044605          327 LSF-VR-NLTSLERLELSRCPILK----SFPEN-GLLPSVVYLSIYLCP  368 (405)
Q Consensus       327 l~~-l~-~l~~L~~L~l~~c~~l~----~l~~~-~~~~~L~~L~i~~c~  368 (405)
                       .. +. ..++|++|++++|..-.    .++.. ...++|++|++++|+
T Consensus       362 -~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          362 -CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             -HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             -HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence             00 11 25688899998875322    44443 334688899998884

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.31  E-value=9.2e-12  Score=107.22  Aligned_cols=150  Identities=16%  Similarity=0.232  Sum_probs=100.6

Q ss_pred             CCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcc
Q 044605          146 SFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSL  225 (405)
Q Consensus       146 ~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L  225 (405)
                      .+++|+.|++++|. +..+|++..+++|++|++.++ .+..++.       ...+++|++|+++++ .+.+.        
T Consensus        42 ~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~n-~~~~~~~-------l~~l~~L~~L~l~~n-~l~~~--------  103 (197)
T 4ezg_A           42 QMNSLTYITLANIN-VTDLTGIEYAHNIKDLTINNI-HATNYNP-------ISGLSNLERLRIMGK-DVTSD--------  103 (197)
T ss_dssp             HHHTCCEEEEESSC-CSCCTTGGGCTTCSEEEEESC-CCSCCGG-------GTTCTTCCEEEEECT-TCBGG--------
T ss_pred             hcCCccEEeccCCC-ccChHHHhcCCCCCEEEccCC-CCCcchh-------hhcCCCCCEEEeECC-ccCcc--------
Confidence            46778888888776 667777777777777777766 2333222       112555555555553 22211        


Q ss_pred             cEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcccccccCCCCC
Q 044605          226 ERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSH  305 (405)
Q Consensus       226 ~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~  305 (405)
                                .+..+..+++|++|++++|....                                    ..|..+..+++
T Consensus       104 ----------~~~~l~~l~~L~~L~Ls~n~i~~------------------------------------~~~~~l~~l~~  137 (197)
T 4ezg_A          104 ----------KIPNLSGLTSLTLLDISHSAHDD------------------------------------SILTKINTLPK  137 (197)
T ss_dssp             ----------GSCCCTTCTTCCEEECCSSBCBG------------------------------------GGHHHHTTCSS
T ss_pred             ----------cChhhcCCCCCCEEEecCCccCc------------------------------------HhHHHHhhCCC
Confidence                      13455667788888887764331                                    23456778999


Q ss_pred             ccEEEEeCCc-ccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCc
Q 044605          306 ITRISIVGSY-LVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCP  368 (405)
Q Consensus       306 L~~L~l~~~~-l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~  368 (405)
                      |+.|++++|. ++++|.        +.++++|++|++++|. +++++....+++|++|++++.+
T Consensus       138 L~~L~L~~n~~i~~~~~--------l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          138 VNSIDLSYNGAITDIMP--------LKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCEEECCSCTBCCCCGG--------GGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred             CCEEEccCCCCccccHh--------hcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence            9999999986 888762        5789999999999975 6667644556789999998864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.30  E-value=7.8e-12  Score=114.59  Aligned_cols=163  Identities=15%  Similarity=0.200  Sum_probs=98.4

Q ss_pred             CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP  201 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  201 (405)
                      +++|+.|++.++....++. +.  .+++|+.|++++|. ++.++.+..+++|++|++.++. +..++.       ...++
T Consensus        45 l~~L~~L~l~~~~i~~~~~-~~--~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-------l~~l~  112 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQG-IQ--YLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENK-VKDLSS-------LKDLK  112 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTT-GG--GCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCGGG-------GTTCT
T ss_pred             cCcccEEEccCCCcccChh-Hh--cCCCCCEEEccCCc-cCCCcccccCCCCCEEECCCCc-CCCChh-------hccCC
Confidence            4567777777766655553 33  57778888887776 5556557777777777777653 333433       22367


Q ss_pred             cccEEeeccCccccccCCC--CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCee
Q 044605          202 CLRELSIINCSKLKGRLPQ--HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPE  277 (405)
Q Consensus       202 ~L~~L~l~~~~~l~~~l~~--~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~  277 (405)
                      +|++|+++++ .+++ ++.  .+++|+.|++++|.  .+ ..+..+++|+.|++++|..                     
T Consensus       113 ~L~~L~L~~n-~i~~-~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l---------------------  168 (291)
T 1h6t_A          113 KLKSLSLEHN-GISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI---------------------  168 (291)
T ss_dssp             TCCEEECTTS-CCCC-CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC---------------------
T ss_pred             CCCEEECCCC-cCCC-ChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc---------------------
Confidence            7777777765 3332 221  45556666555543  12 3344455555555555422                     


Q ss_pred             ecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          278 KSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       278 l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                                      +.++. +..+++|+.|++++|.+++++.        +..+++|+.|++++|+
T Consensus       169 ----------------~~~~~-l~~l~~L~~L~L~~N~i~~l~~--------l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          169 ----------------SDIVP-LAGLTKLQNLYLSKNHISDLRA--------LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             ----------------CCCGG-GTTCTTCCEEECCSSCCCBCGG--------GTTCTTCSEEEEEEEE
T ss_pred             ----------------ccchh-hcCCCccCEEECCCCcCCCChh--------hccCCCCCEEECcCCc
Confidence                            33333 6677777777777777776643        3667777777777754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.27  E-value=3.8e-11  Score=119.69  Aligned_cols=178  Identities=18%  Similarity=0.121  Sum_probs=130.5

Q ss_pred             CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc
Q 044605          123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC  202 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  202 (405)
                      .+++.|++.++....+|..+    +++|+.|++++|. ++.+|  +.+++|++|+++++. +..++.         ...+
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~Ls~N~-l~~ip~---------l~~~  121 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL----PPQITVLEITQNA-LISLP--ELPASLEYLDACDNR-LSTLPE---------LPAS  121 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC----CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSSC-CSCCCC---------CCTT
T ss_pred             CCccEEEeCCCCCCccCHhH----cCCCCEEECcCCC-Ccccc--cccCCCCEEEccCCC-CCCcch---------hhcC
Confidence            47999999998877787754    3789999999987 77888  678999999999874 444543         1239


Q ss_pred             ccEEeeccCccccccCCCCCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eee
Q 044605          203 LRELSIINCSKLKGRLPQHFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEK  278 (405)
Q Consensus       203 L~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l  278 (405)
                      |++|+++++ .+++ +|..+++|+.|+++++.  .+|.   .+++|+.|++++|...     .+|.  +.  ++|  |++
T Consensus       122 L~~L~Ls~N-~l~~-lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-----~lp~--l~--~~L~~L~L  187 (571)
T 3cvr_A          122 LKHLDVDNN-QLTM-LPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-----FLPE--LP--ESLEALDV  187 (571)
T ss_dssp             CCEEECCSS-CCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-----CCCC--CC--TTCCEEEC
T ss_pred             CCEEECCCC-cCCC-CCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-----Ccch--hh--CCCCEEEC
Confidence            999999985 5664 66678899999998864  2333   4679999999998644     3444  33  556  777


Q ss_pred             cCCCCccEEecCCCCcccccccCCCCCc-------cEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605          279 SRTEVLPWEIGSPDQESLPEGLHKLSHI-------TRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP  351 (405)
Q Consensus       279 ~~~~~l~l~i~~~~l~~lp~~~~~l~~L-------~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~  351 (405)
                      +++          +++.+|. +..  +|       +.|++++|.++.||..       +..+++|+.|++++|+..+.+|
T Consensus       188 s~N----------~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-------l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          188 STN----------LLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPEN-------ILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CSS----------CCSSCCC-CC----------CCEEEECCSSCCCCCCGG-------GGGSCTTEEEECCSSSCCHHHH
T ss_pred             cCC----------CCCchhh-HHH--hhhcccccceEEecCCCcceecCHH-------HhcCCCCCEEEeeCCcCCCcCH
Confidence            666          5567776 443  66       8899999989888876       4568889999999887655444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.25  E-value=2.9e-11  Score=110.76  Aligned_cols=151  Identities=17%  Similarity=0.205  Sum_probs=118.3

Q ss_pred             cCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605          118 MLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA  197 (405)
Q Consensus       118 ~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  197 (405)
                      .+..+++|+.|++.++....++. +.  .+++|+.|++++|. ++.++.++.+++|++|+++++. +..++.       .
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~~~~-l~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-i~~~~~-------l  130 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTDIKP-LA--NLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG-ISDING-------L  130 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC-CCCCGG-------G
T ss_pred             hHhcCCCCCEEEccCCccCCCcc-cc--cCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCc-CCCChh-------h
Confidence            35568899999999998777766 55  79999999999987 7788889999999999999874 444443       3


Q ss_pred             CCCCcccEEeeccCccccccCCC--CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCC
Q 044605          198 KGFPCLRELSIINCSKLKGRLPQ--HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSN  273 (405)
Q Consensus       198 ~~~~~L~~L~l~~~~~l~~~l~~--~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~  273 (405)
                      ..+++|++|+++++ .+++ ++.  .+++|+.|++++|.  .++. +..+++|+.|++++|...                
T Consensus       131 ~~l~~L~~L~l~~n-~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~----------------  191 (291)
T 1h6t_A          131 VHLPQLESLYLGNN-KITD-ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS----------------  191 (291)
T ss_dssp             GGCTTCCEEECCSS-CCCC-CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC----------------
T ss_pred             cCCCCCCEEEccCC-cCCc-chhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC----------------
Confidence            34899999999986 4543 332  68999999999875  3333 788999999999987332                


Q ss_pred             CCeeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCccccccc
Q 044605          274 PGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPK  321 (405)
Q Consensus       274 ~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~  321 (405)
                                           .+| .+..+++|+.|++++|.+...|.
T Consensus       192 ---------------------~l~-~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          192 ---------------------DLR-ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             ---------------------BCG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             ---------------------CCh-hhccCCCCCEEECcCCcccCCcc
Confidence                                 233 36788999999999988877654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.24  E-value=4e-11  Score=110.87  Aligned_cols=209  Identities=13%  Similarity=0.050  Sum_probs=116.5

Q ss_pred             CCCccEEEEEcCCCCCcCCC-C--CCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCC
Q 044605          147 FENLVVLRFRNCNQCTSLPS-V--GHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFS  223 (405)
Q Consensus       147 l~~L~~L~l~~~~~~~~l~~-l--~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~  223 (405)
                      +++|++|++++|......|. +  +.+++|++|+++++.-....+...  ......+++|++|+++++ .+.+..     
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~--~~~~~~~~~L~~L~Ls~n-~l~~~~-----  161 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA--ELQQWLKPGLKVLSIAQA-HSPAFS-----  161 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH--HHHTTBCSCCCEEEEECC-SSCCCC-----
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH--HHHhhhccCCCEEEeeCC-Ccchhh-----
Confidence            35577777777763333333 3  667777777776654221111000  000012455555555543 222111     


Q ss_pred             cccEEEEeccCCccccCCCCCCcceEEEcCcCCcccccccccc-CCCCCCCCC--eeecCCCCccEEecCCCCccccc--
Q 044605          224 SLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEA-GIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE--  298 (405)
Q Consensus       224 ~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~--  298 (405)
                                   +..+..+++|++|++++|+..+..  .++. ..+..+++|  +++++|          +++.++.  
T Consensus       162 -------------~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~~~l~~L~~L~Ls~N----------~l~~l~~~~  216 (310)
T 4glp_A          162 -------------CEQVRAFPALTSLDLSDNPGLGER--GLMAALCPHKFPAIQNLALRNT----------GMETPTGVC  216 (310)
T ss_dssp             -------------TTSCCCCTTCCEEECCSCTTCHHH--HHHTTSCTTSSCCCCSCBCCSS----------CCCCHHHHH
T ss_pred             -------------HHHhccCCCCCEEECCCCCCccch--hhhHHHhhhcCCCCCEEECCCC----------CCCchHHHH
Confidence                         234445566666666665432100  0111 112344444  555555          3333333  


Q ss_pred             -c-cCCCCCccEEEEeCCccccc-ccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCcchHHHhh
Q 044605          299 -G-LHKLSHITRISIVGSYLVSF-PKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCK  375 (405)
Q Consensus       299 -~-~~~l~~L~~L~l~~~~l~~l-~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~  375 (405)
                       . +.++++|+.|++++|.++.+ |.. +   ..+..+++|++|++++| .++.+|... +++|++|+++++. +...  
T Consensus       217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~---~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~-l~~~--  287 (310)
T 4glp_A          217 AALAAAGVQPHSLDLSHNSLRATVNPS-A---PRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNR-LNRA--  287 (310)
T ss_dssp             HHHHHHTCCCSSEECTTSCCCCCCCSC-C---SSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCC-CCSC--
T ss_pred             HHHHhcCCCCCEEECCCCCCCccchhh-H---HhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCc-CCCC--
Confidence             2 46889999999999999987 543 1   11223379999999996 567888753 4799999999984 2110  


Q ss_pred             cCcccccccccccCeeEecceEeeCC
Q 044605          376 KDEREYCHLVADIPFVQLNHKLVFDP  401 (405)
Q Consensus       376 ~~~~~~~~~i~~i~~~~~~~~~~~~~  401 (405)
                          .....+.+++.+.+.++.|.++
T Consensus       288 ----~~~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          288 ----PQPDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             ----CCTTSCCCCSCEECSSTTTSCC
T ss_pred             ----chhhhCCCccEEECcCCCCCCC
Confidence                2245568899999998887653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.23  E-value=1.4e-14  Score=146.27  Aligned_cols=61  Identities=15%  Similarity=0.085  Sum_probs=36.2

Q ss_pred             CCCcCEEeeecCCCCccc-CCC--CCcCCccEEeecCCcchHHHhhcCcccccccccccCeeEecceEe
Q 044605          333 LTSLERLELSRCPILKSF-PEN--GLLPSVVYLSIYLCPDLEEKCKKDEREYCHLVADIPFVQLNHKLV  398 (405)
Q Consensus       333 l~~L~~L~l~~c~~l~~l-~~~--~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~  398 (405)
                      +++|++|++++|.. ++. ...  ..+++|++|++++|+- ......   +......+++.+.+.+..+
T Consensus       455 ~~~L~~L~L~~~~i-~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~---~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGD-SDLGMHHVLSGCDSLRKLEIRDCPF-GDKALL---ANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCS-SHHHHHHHHHHCTTCCEEEEESCSC-CHHHHH---HTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCC-cHHHHHHHHhcCCCcCEEECcCCCC-cHHHHH---HHHHhCCCCCEEeeeCCCC
Confidence            78899999988763 322 111  2257999999999974 221110   1112346677777766544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.22  E-value=1.9e-11  Score=123.10  Aligned_cols=121  Identities=14%  Similarity=0.165  Sum_probs=75.3

Q ss_pred             CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP  201 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  201 (405)
                      +.+|+.|++.++....+|. +.  .+++|+.|++++|. +..++.+..+++|+.|++.++. +..++.       ...++
T Consensus        42 L~~L~~L~l~~n~i~~l~~-l~--~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~-------l~~l~  109 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQG-IQ--YLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENK-IKDLSS-------LKDLK  109 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTT-GG--GCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCCTT-------STTCT
T ss_pred             CCCCCEEECcCCCCCCChH-Hc--cCCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCC-CCCChh-------hccCC
Confidence            4567777777766666653 33  57888888887776 6666667778888888887753 444433       23377


Q ss_pred             cccEEeeccCccccccCCC--CCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCC
Q 044605          202 CLRELSIINCSKLKGRLPQ--HFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGE  256 (405)
Q Consensus       202 ~L~~L~l~~~~~l~~~l~~--~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~  256 (405)
                      +|++|+++++ .+.+ ++.  .+++|+.|++++|.-- ...+..+++|+.|++++|..
T Consensus       110 ~L~~L~Ls~N-~l~~-l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A          110 KLKSLSLEHN-GISD-INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             TCCEEECTTS-CCCC-CGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCC
T ss_pred             CCCEEEecCC-CCCC-CccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcC
Confidence            7888887775 3332 332  4666677766665311 14455566666666666643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.20  E-value=4.4e-13  Score=128.01  Aligned_cols=185  Identities=12%  Similarity=0.119  Sum_probs=100.0

Q ss_pred             hccCCCCCCccEEEEEeeCCCC-----CCcccCCCCCCCccEEEEEcCCCCCcC-----CC-CCCC---------CCccE
Q 044605          116 LEMLKPHYGLKELKVQNYGGTK-----FPAWLGQSSFENLVVLRFRNCNQCTSL-----PS-VGHL---------PLLKN  175 (405)
Q Consensus       116 ~~~l~~~~~L~~L~l~~~~~~~-----lp~~~~~~~l~~L~~L~l~~~~~~~~l-----~~-l~~l---------~~L~~  175 (405)
                      ...+..+++|+.|++.++....     +|.++.  .+++|+.|++++|. ++..     +. +..+         ++|++
T Consensus        87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~  163 (386)
T 2ca6_A           87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS--KHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRS  163 (386)
T ss_dssp             HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHH--HCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHH--hCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence            3445567778888887766543     344444  57778888887776 3321     11 2222         67777


Q ss_pred             EeecCCCCC-eeeCCCCCCCCCCCCCCcccEEeeccCccccc-----cCC---CCCCcccEEEEeccCC-------cccc
Q 044605          176 LVIKGMGRM-AKAGTTGGDQQAAKGFPCLRELSIINCSKLKG-----RLP---QHFSSLERIVIMSCEQ-------LLVS  239 (405)
Q Consensus       176 L~l~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~l~---~~~~~L~~L~l~~c~~-------l~~~  239 (405)
                      |++.++.-. ..++.+.   .....+++|++|++++|. +.+     ..+   ..+++|+.|++++|.-       ++..
T Consensus       164 L~L~~n~l~~~~~~~l~---~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~  239 (386)
T 2ca6_A          164 IICGRNRLENGSMKEWA---KTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  239 (386)
T ss_dssp             EECCSSCCTGGGHHHHH---HHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             EECCCCCCCcHHHHHHH---HHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence            777665421 1111000   001125667777776652 221     111   1455666666665542       2445


Q ss_pred             CCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCccccccc--CCCCCccEEEEeCCccc
Q 044605          240 CTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGL--HKLSHITRISIVGSYLV  317 (405)
Q Consensus       240 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~--~~l~~L~~L~l~~~~l~  317 (405)
                      +..+++|++|++++|....     ..                           ...+|..+  ..+++|+.|++++|.++
T Consensus       240 l~~~~~L~~L~L~~n~i~~-----~~---------------------------~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSA-----RG---------------------------AAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCH-----HH---------------------------HHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HccCCCcCEEECCCCCCch-----hh---------------------------HHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            5556666666666653221     00                           01134444  34777888888887777


Q ss_pred             c-----cccCCCCCcccC-CCCCCcCEEeeecCCC
Q 044605          318 S-----FPKGGLESLSFV-RNLTSLERLELSRCPI  346 (405)
Q Consensus       318 ~-----l~~~~~~~l~~l-~~l~~L~~L~l~~c~~  346 (405)
                      .     +|..       + .++++|++|++++|+.
T Consensus       288 ~~g~~~l~~~-------l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          288 LDAVRTLKTV-------IDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHHHHHHH-------HHHHCTTCCEEECTTSBS
T ss_pred             HHHHHHHHHH-------HHhcCCCceEEEccCCcC
Confidence            6     5544       2 4467888888887654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.18  E-value=6.5e-11  Score=119.11  Aligned_cols=161  Identities=14%  Similarity=0.179  Sum_probs=70.1

Q ss_pred             CCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC--CCCc
Q 044605          147 FENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ--HFSS  224 (405)
Q Consensus       147 l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~--~~~~  224 (405)
                      +++|+.|++++|. +..++++..+++|+.|++.++. +..++.       ...+++|+.|+++++ .+.+ ++.  .+++
T Consensus        42 L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~-l~~~~~-------l~~l~~L~~L~Ls~N-~l~~-l~~l~~l~~  110 (605)
T 1m9s_A           42 LNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNK-LTDIKP-------LTNLKNLGWLFLDEN-KIKD-LSSLKDLKK  110 (605)
T ss_dssp             HTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSC-CCCCGG-------GGGCTTCCEEECCSS-CCCC-CTTSTTCTT
T ss_pred             CCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCC-CCCChh-------hccCCCCCEEECcCC-CCCC-ChhhccCCC
Confidence            4445555554444 4444445555555555554432 222221       122455555555543 2221 221  3455


Q ss_pred             ccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccC
Q 044605          225 LERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLH  301 (405)
Q Consensus       225 L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~  301 (405)
                      |+.|++++|.-- ...+..+++|+.|++++|....     +  ..+..+++|  |++++|          .+..++. +.
T Consensus       111 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-----l--~~l~~l~~L~~L~Ls~N----------~l~~~~~-l~  172 (605)
T 1m9s_A          111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD-----I--TVLSRLTKLDTLSLEDN----------QISDIVP-LA  172 (605)
T ss_dssp             CCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCC-----C--GGGGSCTTCSEEECCSS----------CCCCCGG-GT
T ss_pred             CCEEEecCCCCCCCccccCCCccCEEECCCCccCC-----c--hhhcccCCCCEEECcCC----------cCCCchh-hc
Confidence            555555544311 1234445555555555543321     1  233444444  444444          2223322 44


Q ss_pred             CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecC
Q 044605          302 KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRC  344 (405)
Q Consensus       302 ~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c  344 (405)
                      .+++|+.|++++|.++.++.        +..+++|+.|++++|
T Consensus       173 ~l~~L~~L~Ls~N~i~~l~~--------l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISDLRA--------LAGLKNLDVLELFSQ  207 (605)
T ss_dssp             TCTTCCEEECCSSCCCBCGG--------GTTCTTCSEEECCSE
T ss_pred             cCCCCCEEECcCCCCCCChH--------HccCCCCCEEEccCC
Confidence            55555555555555544431        344555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.16  E-value=9.5e-13  Score=125.66  Aligned_cols=232  Identities=12%  Similarity=0.079  Sum_probs=138.3

Q ss_pred             hccCCCCCCccEEEEEeeCCCC-----CCcccCCCCCCCccEEEEEcCC--CCC-cCCC--------CCCCCCccEEeec
Q 044605          116 LEMLKPHYGLKELKVQNYGGTK-----FPAWLGQSSFENLVVLRFRNCN--QCT-SLPS--------VGHLPLLKNLVIK  179 (405)
Q Consensus       116 ~~~l~~~~~L~~L~l~~~~~~~-----lp~~~~~~~l~~L~~L~l~~~~--~~~-~l~~--------l~~l~~L~~L~l~  179 (405)
                      .+.+..+++|+.|++.++....     ++..+.  .+++|+.|++++|.  .+. .+|.        +..+++|++|+++
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA--SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTT--TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHH--hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            3344456778888887765332     122233  57788888888764  111 2221        3567888888887


Q ss_pred             CCCCCe----eeCCCCCCCCCCCCCCcccEEeeccCccccc----cCCC---CC---------CcccEEEEeccCCc---
Q 044605          180 GMGRMA----KAGTTGGDQQAAKGFPCLRELSIINCSKLKG----RLPQ---HF---------SSLERIVIMSCEQL---  236 (405)
Q Consensus       180 ~~~~l~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~l~~---~~---------~~L~~L~l~~c~~l---  236 (405)
                      ++.-..    .++.      ....+++|++|++++|. +.+    .++.   .+         ++|++|++++|.--   
T Consensus       103 ~n~l~~~~~~~l~~------~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~  175 (386)
T 2ca6_A          103 DNAFGPTAQEPLID------FLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  175 (386)
T ss_dssp             SCCCCTTTHHHHHH------HHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             CCcCCHHHHHHHHH------HHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence            764222    1211      11236788888888764 221    1111   12         78888888876521   


Q ss_pred             -c---ccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEE
Q 044605          237 -L---VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRIS  310 (405)
Q Consensus       237 -~---~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~  310 (405)
                       +   ..+..+++|++|++++|.........+....+..+++|  |++++|....     .+...+|..+..+++|+.|+
T Consensus       176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~-----~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-----LGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH-----HHHHHHHHHGGGCTTCCEEE
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc-----HHHHHHHHHHccCCCcCEEE
Confidence             2   34456788888888887543100000122255566666  7777763210     00034677788899999999


Q ss_pred             EeCCccccc-----ccCCCCCcccC--CCCCCcCEEeeecCCCCc----ccCCC--CCcCCccEEeecCCc
Q 044605          311 IVGSYLVSF-----PKGGLESLSFV--RNLTSLERLELSRCPILK----SFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       311 l~~~~l~~l-----~~~~~~~l~~l--~~l~~L~~L~l~~c~~l~----~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      +++|.++..     +..       +  ..+++|++|++++|..-.    .+|..  ..+++|++|++++|+
T Consensus       251 L~~n~i~~~~~~~l~~~-------l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDA-------FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CTTCCCCHHHHHHHHHH-------HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCCCCchhhHHHHHHH-------HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            999887753     332       2  347899999999976433    26654  234799999999884

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.11  E-value=9.5e-10  Score=109.61  Aligned_cols=177  Identities=18%  Similarity=0.154  Sum_probs=129.7

Q ss_pred             CCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCccc
Q 044605          148 ENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLE  226 (405)
Q Consensus       148 ~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~  226 (405)
                      .+|+.|++++|. ++.+|. +  +++|++|+++++. +..++         ..+++|++|+++++ .+++ +|....+|+
T Consensus        59 ~~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---------~~l~~L~~L~Ls~N-~l~~-ip~l~~~L~  123 (571)
T 3cvr_A           59 NQFSELQLNRLN-LSSLPDNL--PPQITVLEITQNA-LISLP---------ELPASLEYLDACDN-RLST-LPELPASLK  123 (571)
T ss_dssp             TTCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSC-CSCCC---------CCCTTCCEEECCSS-CCSC-CCCCCTTCC
T ss_pred             CCccEEEeCCCC-CCccCHhH--cCCCCEEECcCCC-Ccccc---------cccCCCCEEEccCC-CCCC-cchhhcCCC
Confidence            489999999987 677776 4  4899999999864 44453         24799999999996 6664 666223899


Q ss_pred             EEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCC
Q 044605          227 RIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHK  302 (405)
Q Consensus       227 ~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~  302 (405)
                      .|+++++.  .+|.   .+++|+.|++++|...     .++.    .+++|  |++++|          .++.+|. +. 
T Consensus       124 ~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-----~lp~----~l~~L~~L~Ls~N----------~L~~lp~-l~-  179 (571)
T 3cvr_A          124 HLDVDNNQLTMLPE---LPALLEYINADNNQLT-----MLPE----LPTSLEVLSVRNN----------QLTFLPE-LP-  179 (571)
T ss_dssp             EEECCSSCCSCCCC---CCTTCCEEECCSSCCS-----CCCC----CCTTCCEEECCSS----------CCSCCCC-CC-
T ss_pred             EEECCCCcCCCCCC---cCccccEEeCCCCccC-----cCCC----cCCCcCEEECCCC----------CCCCcch-hh-
Confidence            99999864  3444   6789999999998654     3443    34566  777777          5567887 55 


Q ss_pred             CCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCCc
Q 044605          303 LSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLCP  368 (405)
Q Consensus       303 l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~  368 (405)
                       ++|+.|++++|+++.+|.  |.. .-....+.|+.|++++| .++.+|.. ..+++|+.|++++++
T Consensus       180 -~~L~~L~Ls~N~L~~lp~--~~~-~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          180 -ESLEALDVSTNLLESLPA--VPV-RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             -TTCCEEECCSSCCSSCCC--CC---------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             -CCCCEEECcCCCCCchhh--HHH-hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence             999999999999999886  300 00011223399999996 57788875 446799999999986

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.08  E-value=1.3e-09  Score=95.92  Aligned_cols=123  Identities=23%  Similarity=0.316  Sum_probs=73.7

Q ss_pred             CcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccc
Q 044605          223 SSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLP  297 (405)
Q Consensus       223 ~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp  297 (405)
                      ++|+.|+++++.  .+ +..|..+++|+.|++++|...     .++...|..+++|  |+++++          .++.+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-----~i~~~~~~~l~~L~~L~Ls~N----------~l~~l~  104 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-----ALPVGVFDSLTQLTVLDLGTN----------QLTVLP  104 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSS----------CCCCCC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-----CcChhhcccCCCcCEEECCCC----------cCCccC
Confidence            445555555432  11 344555666666666665432     4454455555555  555555          334454


Q ss_pred             c-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          298 E-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       298 ~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      . .+..+++|+.|++++|+++.+|..       +.++++|++|++++| .++.++..  ..+++|+.|++.++|
T Consensus       105 ~~~~~~l~~L~~L~Ls~N~l~~lp~~-------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          105 SAVFDRLVHLKELFMCCNKLTELPRG-------IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCSCCTT-------GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             hhHhCcchhhCeEeccCCcccccCcc-------cccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence            4 356777777777777777777765       567777777777775 45566543  344677777777754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.07  E-value=5.3e-10  Score=105.56  Aligned_cols=168  Identities=20%  Similarity=0.189  Sum_probs=85.4

Q ss_pred             EEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CC-CCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcc
Q 044605          127 ELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VG-HLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCL  203 (405)
Q Consensus       127 ~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L  203 (405)
                      .++..++....+|..+.    ..++.|++++|. ++.++.  +. .+++|++|++.++ .+..++.     .....+++|
T Consensus        22 ~l~c~~~~l~~iP~~~~----~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~-----~~~~~l~~L   90 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLP----SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISS-----EAFVPVPNL   90 (361)
T ss_dssp             EEECCSSCCSSCCSSCC----TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECT-----TTTTTCTTC
T ss_pred             EEEeCCCCcCccCccCC----CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccCh-----hhccCCCCC
Confidence            45555555555665432    457777777765 555543  44 6777777777665 3444432     011236677


Q ss_pred             cEEeeccCccccccCCCCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCC
Q 044605          204 RELSIINCSKLKGRLPQHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRT  281 (405)
Q Consensus       204 ~~L~l~~~~~l~~~l~~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~  281 (405)
                      ++|+++++ .++...+                  ..|..+++|+.|++++|...     .++...|..+.+|  |+++++
T Consensus        91 ~~L~Ls~N-~l~~~~~------------------~~~~~l~~L~~L~L~~N~i~-----~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A           91 RYLDLSSN-HLHTLDE------------------FLFSDLQALEVLLLYNNHIV-----VVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             CEEECCSS-CCCEECT------------------TTTTTCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCC-cCCcCCH------------------HHhCCCcCCCEEECCCCccc-----EECHHHhCCcccCCEEECCCC
Confidence            77777664 3442211                  22333444444444444322     2223333333333  333333


Q ss_pred             CCccEEecCCCCccccccc----CCCCCccEEEEeCCcccccccCCCCCcccCCCCCC--cCEEeeecCC
Q 044605          282 EVLPWEIGSPDQESLPEGL----HKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTS--LERLELSRCP  345 (405)
Q Consensus       282 ~~l~l~i~~~~l~~lp~~~----~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~--L~~L~l~~c~  345 (405)
                                .++.+|..+    ..+++|+.|++++|+++.+|...+      ..++.  |+.|++.+|+
T Consensus       147 ----------~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~------~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          147 ----------QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL------QKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             ----------CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHH------HHSCHHHHTTEECCSSC
T ss_pred             ----------cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHh------hhccHhhcceEEecCCC
Confidence                      223444332    457777777777777777664433      33443  3667776654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.07  E-value=2e-09  Score=94.20  Aligned_cols=107  Identities=11%  Similarity=0.153  Sum_probs=54.5

Q ss_pred             CCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccc-cCCCCCccEEEEeCCcc
Q 044605          240 CTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEG-LHKLSHITRISIVGSYL  316 (405)
Q Consensus       240 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~-~~~l~~L~~L~l~~~~l  316 (405)
                      |..+++|+.|++++|...     .+..+.|..+++|  |+++++          .++.+|.. +.++++|+.|++++|.+
T Consensus        52 ~~~l~~L~~L~Ls~N~i~-----~~~~~~~~~l~~L~~L~Ls~N----------~l~~l~~~~f~~l~~L~~L~L~~N~l  116 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQIS-----ELAPDAFQGLRSLNSLVLYGN----------KITELPKSLFEGLFSLQLLLLNANKI  116 (220)
T ss_dssp             STTCTTCCEEECCSSCCC-----EECTTTTTTCSSCCEEECCSS----------CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             hhCCCCCCEEECCCCcCC-----CcCHHHhhCCcCCCEEECCCC----------cCCccCHhHccCCCCCCEEECCCCCC
Confidence            344444555555444332     2233344444444  444444          33344443 35666666666666666


Q ss_pred             cccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          317 VSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       317 ~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      +.++...|      .++++|++|++++|. ++.++..  ..+++|++|+++++|
T Consensus       117 ~~~~~~~~------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          117 NCLRVDAF------QDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCCTTTT------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEeCHHHc------CCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence            66554433      556666666666643 4444432  334566666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.07  E-value=5.5e-10  Score=100.60  Aligned_cols=98  Identities=23%  Similarity=0.190  Sum_probs=43.5

Q ss_pred             CCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC-CCCcc
Q 044605          147 FENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ-HFSSL  225 (405)
Q Consensus       147 l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~-~~~~L  225 (405)
                      +++|+.|++++|. ++.++++..+++|++|+++++. +..++.       ...+++|++|+++++ .+++ ++. ..++|
T Consensus        40 l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~-i~~~~~-------l~~l~~L~~L~L~~N-~l~~-l~~~~~~~L  108 (263)
T 1xeu_A           40 LSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQ-ISDLSP-------LKDLTKLEELSVNRN-RLKN-LNGIPSACL  108 (263)
T ss_dssp             HTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSC-CCCCGG-------GTTCSSCCEEECCSS-CCSC-CTTCCCSSC
T ss_pred             cCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCc-cCCChh-------hccCCCCCEEECCCC-ccCC-cCccccCcc
Confidence            4445555554443 4444444445555555554432 222221       112455555555443 2221 221 11445


Q ss_pred             cEEEEeccCCc-cccCCCCCCcceEEEcCcC
Q 044605          226 ERIVIMSCEQL-LVSCTTLPLLCELEIDGFG  255 (405)
Q Consensus       226 ~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~  255 (405)
                      +.|++++|.-- ...+..+++|+.|++++|.
T Consensus       109 ~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~  139 (263)
T 1xeu_A          109 SRLFLDNNELRDTDSLIHLKNLEILSIRNNK  139 (263)
T ss_dssp             CEEECCSSCCSBSGGGTTCTTCCEEECTTSC
T ss_pred             cEEEccCCccCCChhhcCcccccEEECCCCc
Confidence            55555444210 1345556666666666653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.06  E-value=1.1e-09  Score=96.56  Aligned_cols=150  Identities=21%  Similarity=0.241  Sum_probs=94.8

Q ss_pred             ccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEEE
Q 044605          150 LVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERIV  229 (405)
Q Consensus       150 L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L~  229 (405)
                      .+.++++++. ++.+|. +-.++|++|++.++. +..+..     .....+++|++|+++++ .+. .++.         
T Consensus        21 ~~~v~c~~~~-l~~ip~-~~~~~L~~L~Ls~n~-i~~~~~-----~~~~~l~~L~~L~L~~N-~l~-~i~~---------   81 (229)
T 3e6j_A           21 GTTVDCRSKR-HASVPA-GIPTNAQILYLHDNQ-ITKLEP-----GVFDSLINLKELYLGSN-QLG-ALPV---------   81 (229)
T ss_dssp             TTEEECTTSC-CSSCCS-CCCTTCSEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCC-CCCT---------
T ss_pred             CCEeEccCCC-cCccCC-CCCCCCCEEEcCCCc-cCccCH-----HHhhCccCCcEEECCCC-CCC-CcCh---------
Confidence            4456665544 566664 123778888887754 333322     01123677777777764 333 2321         


Q ss_pred             EeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCcc
Q 044605          230 IMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHIT  307 (405)
Q Consensus       230 l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~  307 (405)
                              ..|..+++|+.|++++|...     .++...|..+.+|  |+++++          +++.+|..+..+++|+
T Consensus        82 --------~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~~l~~L~~L~Ls~N----------~l~~lp~~~~~l~~L~  138 (229)
T 3e6j_A           82 --------GVFDSLTQLTVLDLGTNQLT-----VLPSAVFDRLVHLKELFMCCN----------KLTELPRGIERLTHLT  138 (229)
T ss_dssp             --------TTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSS----------CCCSCCTTGGGCTTCS
T ss_pred             --------hhcccCCCcCEEECCCCcCC-----ccChhHhCcchhhCeEeccCC----------cccccCcccccCCCCC
Confidence                    23445556666666665433     3444455555555  555555          4467788888999999


Q ss_pred             EEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCC
Q 044605          308 RISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPIL  347 (405)
Q Consensus       308 ~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l  347 (405)
                      .|++++|+++.++...|      ..+++|+.|++.+|+..
T Consensus       139 ~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          139 HLALDQNQLKSIPHGAF------DRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             EEECCSSCCCCCCTTTT------TTCTTCCEEECTTSCBC
T ss_pred             EEECCCCcCCccCHHHH------hCCCCCCEEEeeCCCcc
Confidence            99999999999987654      78899999999998754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.06  E-value=1.6e-09  Score=94.77  Aligned_cols=42  Identities=24%  Similarity=0.381  Sum_probs=27.1

Q ss_pred             cccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          298 EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       298 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      ..+..+++|+.|++++|+++.++...      +..+++|++|++++|+
T Consensus       123 ~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          123 DSFIGLSSVRLLSLYDNQITTVAPGA------FDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TSSTTCTTCSEEECTTSCCCCBCTTT------TTTCTTCCEEECCSCC
T ss_pred             hHcCCCccCCEEECCCCcCCEECHHH------hcCCCCCCEEEecCcC
Confidence            34556677777777777777664433      3566677777777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.02  E-value=3.1e-09  Score=92.95  Aligned_cols=107  Identities=16%  Similarity=0.238  Sum_probs=78.2

Q ss_pred             CCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcc
Q 044605          240 CTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYL  316 (405)
Q Consensus       240 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l  316 (405)
                      |..+++|++|++++|...     .++.+.|..+++|  |+++++          .++.++. .+..+++|++|++++|++
T Consensus        53 ~~~l~~L~~L~L~~N~i~-----~i~~~~~~~l~~L~~L~Ls~N----------~l~~~~~~~~~~l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKIT-----DIEEGAFEGASGVNEILLTSN----------RLENVQHKMFKGLESLKTLMLRSNRI  117 (220)
T ss_dssp             GGGCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSS----------CCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred             hccCCCCCEEECCCCcCC-----EECHHHhCCCCCCCEEECCCC----------ccCccCHhHhcCCcCCCEEECCCCcC
Confidence            455667777777666543     4455566666666  666665          3345544 588999999999999999


Q ss_pred             cccccCCCCCcccCCCCCCcCEEeeecCCCCccc-CCC-CCcCCccEEeecCCc
Q 044605          317 VSFPKGGLESLSFVRNLTSLERLELSRCPILKSF-PEN-GLLPSVVYLSIYLCP  368 (405)
Q Consensus       317 ~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l-~~~-~~~~~L~~L~i~~c~  368 (405)
                      +.++...|      .++++|++|++++|. ++.+ |.. ..+++|++|+++++|
T Consensus       118 ~~~~~~~~------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          118 TCVGNDSF------IGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CCBCTTSS------TTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CeECHhHc------CCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence            99866554      788999999999975 5555 444 556799999999876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.01  E-value=1.4e-09  Score=94.20  Aligned_cols=143  Identities=22%  Similarity=0.248  Sum_probs=70.9

Q ss_pred             EEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEE
Q 044605          152 VLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERI  228 (405)
Q Consensus       152 ~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L  228 (405)
                      .+++.++. ++.+|. +..++|++|++.++. +..++.     .....+++|++|+++++ .+++..+.   .+++|++|
T Consensus        11 ~v~c~~~~-l~~~p~-~~~~~l~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L   81 (208)
T 2o6s_A           11 TVECYSQG-RTSVPT-GIPAQTTYLDLETNS-LKSLPN-----GVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYL   81 (208)
T ss_dssp             EEECCSSC-CSSCCS-CCCTTCSEEECCSSC-CCCCCT-----TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             EEEecCCC-ccCCCC-CCCCCCcEEEcCCCc-cCcCCh-----hhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEE
Confidence            34444433 444442 234577778777653 333432     01123677777777764 44422111   34455555


Q ss_pred             EEeccC--Ccc-ccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCccccc-ccCCCC
Q 044605          229 VIMSCE--QLL-VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPE-GLHKLS  304 (405)
Q Consensus       229 ~l~~c~--~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~-~~~~l~  304 (405)
                      +++++.  .++ ..+..+++|++|++++|.                                     ++.+|. .+..++
T Consensus        82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------------------------------l~~~~~~~~~~l~  124 (208)
T 2o6s_A           82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQ-------------------------------------LQSLPDGVFDKLT  124 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------------------------------------CCCCCTTTTTTCT
T ss_pred             ECCCCcCCccCHhHhcCccCCCEEEcCCCc-------------------------------------CcccCHhHhccCC
Confidence            554432  111 123444455555554442                                     223332 245666


Q ss_pred             CccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          305 HITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       305 ~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                      +|+.|++++|.++.++...|      ..+++|++|++++|+.
T Consensus       125 ~L~~L~l~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          125 QLKDLRLYQNQLKSVPDGVF------DRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             TCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSCCB
T ss_pred             cCCEEECCCCccceeCHHHh------ccCCCccEEEecCCCe
Confidence            66666666666666555432      4556666666666543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.01  E-value=6.3e-09  Score=90.99  Aligned_cols=44  Identities=18%  Similarity=0.437  Sum_probs=35.3

Q ss_pred             ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          297 PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       297 p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                      |..+..+++|+.|++++|.++.++...|      ..+++|++|++++|+.
T Consensus       121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          121 VDAFQDLHNLNLLSLYDNKLQTIAKGTF------SPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSSCE
T ss_pred             HHHcCCCCCCCEEECCCCcCCEECHHHH------hCCCCCCEEEeCCCCc
Confidence            3467788899999999999988887654      6788899999988763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.00  E-value=1.9e-11  Score=115.60  Aligned_cols=47  Identities=11%  Similarity=0.099  Sum_probs=26.8

Q ss_pred             ccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCC
Q 044605          299 GLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCP  345 (405)
Q Consensus       299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~  345 (405)
                      .+..+++|+.|++++|.+..++..++..++. +.++++|++|++++|+
T Consensus       248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            3456677777777776644443322211111 4566777777777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.99  E-value=8.9e-09  Score=89.07  Aligned_cols=107  Identities=27%  Similarity=0.392  Sum_probs=75.9

Q ss_pred             CCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcc
Q 044605          240 CTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYL  316 (405)
Q Consensus       240 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l  316 (405)
                      +..+++|++|++++|...     .++...|..+++|  ++++++          .++.+|. .+..+++|+.|++++|++
T Consensus        48 ~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l  112 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQ-----SLPNGVFNKLTSLTYLNLSTN----------QLQSLPNGVFDKLTQLKELALNTNQL  112 (208)
T ss_dssp             TTTCTTCSEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSS----------CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             hcccccCcEEECCCCccC-----ccChhhcCCCCCcCEEECCCC----------cCCccCHhHhcCccCCCEEEcCCCcC
Confidence            455666666666665433     3444455556666  666555          3345554 467999999999999999


Q ss_pred             cccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          317 VSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       317 ~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      +.++...|      .++++|++|++++|. ++.++..  ..+++|++|++++++
T Consensus       113 ~~~~~~~~------~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          113 QSLPDGVF------DKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCCCTTTT------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             cccCHhHh------ccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence            99887644      788999999999974 5666654  456799999999853

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.96  E-value=6.3e-12  Score=118.92  Aligned_cols=224  Identities=9%  Similarity=0.040  Sum_probs=135.7

Q ss_pred             CCCCCCccEEEEEeeCCCCCC-----cccCCCCCC-CccEEEEEcCCCCCcCC--CCCCC-----CCccEEeecCCCCCe
Q 044605          119 LKPHYGLKELKVQNYGGTKFP-----AWLGQSSFE-NLVVLRFRNCNQCTSLP--SVGHL-----PLLKNLVIKGMGRMA  185 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp-----~~~~~~~l~-~L~~L~l~~~~~~~~l~--~l~~l-----~~L~~L~l~~~~~l~  185 (405)
                      +...++|+.|++.+|.....+     ..+.  .++ +|++|++++|. ++...  .+..+     ++|++|+++++. +.
T Consensus        18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~   93 (362)
T 3goz_A           18 TSIPHGVTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LS   93 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHH--TCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred             HhCCCCceEEEccCCCCChHHHHHHHHHHH--hCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CC
Confidence            334566899999887765544     2333  466 89999998886 55432  13332     889999998875 33


Q ss_pred             eeCC--CCCCCCCCCCC-CcccEEeeccCccccccCCC-------C-CCcccEEEEeccCCc-------cccCCCCC-Cc
Q 044605          186 KAGT--TGGDQQAAKGF-PCLRELSIINCSKLKGRLPQ-------H-FSSLERIVIMSCEQL-------LVSCTTLP-LL  246 (405)
Q Consensus       186 ~~~~--~~~~~~~~~~~-~~L~~L~l~~~~~l~~~l~~-------~-~~~L~~L~l~~c~~l-------~~~l~~l~-~L  246 (405)
                      ..+.  ++.   ....+ ++|++|+++++. +++..+.       . ..+|++|++++|.--       +..+..++ +|
T Consensus        94 ~~~~~~l~~---~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  169 (362)
T 3goz_A           94 YKSSDELVK---TLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV  169 (362)
T ss_dssp             GSCHHHHHH---HHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             hHHHHHHHH---HHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence            2211  110   01113 789999998864 4432221       1 358999999886421       33344455 89


Q ss_pred             ceEEEcCcCCccccccccccC----CCCCC-CCC--eeecCCCCccEEecCCCCcc-----cccccCC-CCCccEEEEeC
Q 044605          247 CELEIDGFGEVAWINRPVEAG----IFDSS-NPG--PEKSRTEVLPWEIGSPDQES-----LPEGLHK-LSHITRISIVG  313 (405)
Q Consensus       247 ~~L~l~~~~~l~~~~~~~~~~----~~~~l-~~L--l~l~~~~~l~l~i~~~~l~~-----lp~~~~~-l~~L~~L~l~~  313 (405)
                      ++|++++|....     ....    .+... ++|  +++++|.          ++.     ++..+.. .++|+.|++++
T Consensus       170 ~~L~Ls~n~l~~-----~~~~~l~~~l~~~~~~L~~L~Ls~N~----------i~~~~~~~l~~~l~~~~~~L~~L~Ls~  234 (362)
T 3goz_A          170 NSLNLRGNNLAS-----KNCAELAKFLASIPASVTSLDLSANL----------LGLKSYAELAYIFSSIPNHVVSLNLCL  234 (362)
T ss_dssp             CEEECTTSCGGG-----SCHHHHHHHHHTSCTTCCEEECTTSC----------GGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             cEeeecCCCCch-----hhHHHHHHHHHhCCCCCCEEECCCCC----------CChhHHHHHHHHHhcCCCCceEEECcC
Confidence            999999885442     1111    22233 356  7777763          333     5555555 45999999999


Q ss_pred             CcccccccCCCCCccc-CCCCCCcCEEeeecCCC-------CcccCCC-CCcCCccEEeecCCc
Q 044605          314 SYLVSFPKGGLESLSF-VRNLTSLERLELSRCPI-------LKSFPEN-GLLPSVVYLSIYLCP  368 (405)
Q Consensus       314 ~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~~-------l~~l~~~-~~~~~L~~L~i~~c~  368 (405)
                      |.+++.+...+   .. +..+++|++|++++|..       +..++.. ...++|++|++++++
T Consensus       235 N~l~~~~~~~l---~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          235 NCLHGPSLENL---KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             SCCCCCCHHHH---HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             CCCCcHHHHHH---HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            88877543111   11 36778999999999751       1222222 344678999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.95  E-value=3.2e-09  Score=88.54  Aligned_cols=54  Identities=26%  Similarity=0.441  Sum_probs=24.1

Q ss_pred             CCcccEEeeccCcccc-ccCCC---CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcC
Q 044605          200 FPCLRELSIINCSKLK-GRLPQ---HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFG  255 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~-~~l~~---~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~  255 (405)
                      +++|++|++++|. +. +.+|.   .+++|+.|++++|.  .+ ..+..+++|++|++++|.
T Consensus        23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~   82 (168)
T 2ell_A           23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR   82 (168)
T ss_dssp             TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC
T ss_pred             cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc
Confidence            3455555555542 22 12332   34445555555443  11 344445555555555553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.93  E-value=5.9e-09  Score=98.36  Aligned_cols=171  Identities=15%  Similarity=0.154  Sum_probs=111.8

Q ss_pred             cEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCC--CCCCCCCCCCCCcccEEeeccCccccccCCCCCCcccEE
Q 044605          151 VVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGT--TGGDQQAAKGFPCLRELSIINCSKLKGRLPQHFSSLERI  228 (405)
Q Consensus       151 ~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~~~~~L~~L  228 (405)
                      +.++++++. ++.+|. .-.+.++.|+++++ .+..++.  +.      ..+++|++|+++++ .+++ ++         
T Consensus        21 ~~l~c~~~~-l~~iP~-~~~~~l~~L~Ls~N-~l~~l~~~~~~------~~l~~L~~L~L~~N-~i~~-i~---------   80 (361)
T 2xot_A           21 NILSCSKQQ-LPNVPQ-SLPSYTALLDLSHN-NLSRLRAEWTP------TRLTNLHSLLLSHN-HLNF-IS---------   80 (361)
T ss_dssp             TEEECCSSC-CSSCCS-SCCTTCSEEECCSS-CCCEECTTSSS------SCCTTCCEEECCSS-CCCE-EC---------
T ss_pred             CEEEeCCCC-cCccCc-cCCCCCCEEECCCC-CCCccChhhhh------hcccccCEEECCCC-cCCc-cC---------
Confidence            455665544 555553 11245677777765 3444433  11      03566666666553 2321 11         


Q ss_pred             EEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccc-ccccCCCCC
Q 044605          229 VIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSH  305 (405)
Q Consensus       229 ~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~  305 (405)
                              +..|..+++|++|++++|...     .++...|..+.+|  |+++++          .++.+ |..+..+++
T Consensus        81 --------~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N----------~i~~~~~~~~~~l~~  137 (361)
T 2xot_A           81 --------SEAFVPVPNLRYLDLSSNHLH-----TLDEFLFSDLQALEVLLLYNN----------HIVVVDRNAFEDMAQ  137 (361)
T ss_dssp             --------TTTTTTCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSS----------CCCEECTTTTTTCTT
T ss_pred             --------hhhccCCCCCCEEECCCCcCC-----cCCHHHhCCCcCCCEEECCCC----------cccEECHHHhCCccc
Confidence                    245777889999999998654     5677788889999  899888          44555 567889999


Q ss_pred             ccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCC--ccEEeecCCc
Q 044605          306 ITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPS--VVYLSIYLCP  368 (405)
Q Consensus       306 L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~--L~~L~i~~c~  368 (405)
                      |+.|++++|+++.+|...|..   +..+++|+.|++++| .++.+|..  ..++.  ++.|++.++|
T Consensus       138 L~~L~L~~N~l~~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          138 LQKLYLSQNQISRFPVELIKD---GNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCEEECCSSCCCSCCGGGTC-------CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCEEECCCCcCCeeCHHHhcC---cccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence            999999999999998763311   146899999999996 56777643  22233  5789999865

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.92  E-value=5.4e-09  Score=94.05  Aligned_cols=160  Identities=16%  Similarity=0.168  Sum_probs=117.4

Q ss_pred             CCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC--CCCCc
Q 044605          147 FENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP--QHFSS  224 (405)
Q Consensus       147 l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~--~~~~~  224 (405)
                      +.++..++++++. +++++.+..+++|++|++.++ .+..++.       ...+++|++|+++++ .+++ ++  ..+++
T Consensus        18 l~~l~~l~l~~~~-i~~~~~~~~l~~L~~L~l~~n-~i~~l~~-------l~~l~~L~~L~L~~N-~i~~-~~~l~~l~~   86 (263)
T 1xeu_A           18 LANAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNS-NIQSLAG-------MQFFTNLKELHLSHN-QISD-LSPLKDLTK   86 (263)
T ss_dssp             HHHHHHHHHTCSC-TTSEECHHHHTTCSEEECTTS-CCCCCTT-------GGGCTTCCEEECCSS-CCCC-CGGGTTCSS
T ss_pred             HHHHHHHHhcCCC-cccccchhhcCcCcEEECcCC-CcccchH-------HhhCCCCCEEECCCC-ccCC-ChhhccCCC
Confidence            4556666676655 667777778999999999987 4555544       334899999999986 4553 33  36889


Q ss_pred             ccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccccc
Q 044605          225 LERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGL  300 (405)
Q Consensus       225 L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~  300 (405)
                      |+.|+++++.  .++ .+.. ++|+.|++++|....     +  ..+..+++|  ++++++          +++.++ .+
T Consensus        87 L~~L~L~~N~l~~l~-~~~~-~~L~~L~L~~N~l~~-----~--~~l~~l~~L~~L~Ls~N----------~i~~~~-~l  146 (263)
T 1xeu_A           87 LEELSVNRNRLKNLN-GIPS-ACLSRLFLDNNELRD-----T--DSLIHLKNLEILSIRNN----------KLKSIV-ML  146 (263)
T ss_dssp             CCEEECCSSCCSCCT-TCCC-SSCCEEECCSSCCSB-----S--GGGTTCTTCCEEECTTS----------CCCBCG-GG
T ss_pred             CCEEECCCCccCCcC-cccc-CcccEEEccCCccCC-----C--hhhcCcccccEEECCCC----------cCCCCh-HH
Confidence            9999999875  333 2333 899999999986542     2  246777777  888777          445665 57


Q ss_pred             CCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          301 HKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       301 ~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      ..+++|+.|++++|.++.+ ..       +..+++|+.|++++|+
T Consensus       147 ~~l~~L~~L~L~~N~i~~~-~~-------l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          147 GFLSKLEVLDLHGNEITNT-GG-------LTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             GGCTTCCEEECTTSCCCBC-TT-------STTCCCCCEEEEEEEE
T ss_pred             ccCCCCCEEECCCCcCcch-HH-------hccCCCCCEEeCCCCc
Confidence            7889999999999888887 22       5788899999999875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.90  E-value=1.5e-09  Score=90.64  Aligned_cols=124  Identities=20%  Similarity=0.271  Sum_probs=97.1

Q ss_pred             CCCcccEEEEeccC----CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCc
Q 044605          221 HFSSLERIVIMSCE----QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQE  294 (405)
Q Consensus       221 ~~~~L~~L~l~~c~----~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~  294 (405)
                      ..++|+.|++++|.    .++..+..+++|++|++++|....     +  ..+..+++|  +++++|          .++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-----~--~~~~~l~~L~~L~Ls~N----------~l~   84 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----V--SNLPKLPKLKKLELSEN----------RIF   84 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-----C--SSCCCCSSCCEEEEESC----------CCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-----h--hhhccCCCCCEEECcCC----------cCc
Confidence            46889999999875    456666779999999999997543     3  577788888  888888          334


Q ss_pred             c-cccccCCCCCccEEEEeCCccccccc-CCCCCcccCCCCCCcCEEeeecCCCCcccCC----C-CCcCCccEEeecCC
Q 044605          295 S-LPEGLHKLSHITRISIVGSYLVSFPK-GGLESLSFVRNLTSLERLELSRCPILKSFPE----N-GLLPSVVYLSIYLC  367 (405)
Q Consensus       295 ~-lp~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~----~-~~~~~L~~L~i~~c  367 (405)
                      . +|..+..+++|+.|++++|.++.++. ..      +..+++|++|++++|+ ++.++.    . ..+++|++|++++|
T Consensus        85 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEP------LKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             SCCCHHHHHCTTCCEEECBSSSCCSSGGGGG------GSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             hHHHHHHhhCCCCCEEeccCCccCcchhHHH------HhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence            4 66666679999999999999988763 22      5788999999999975 566665    2 55679999999998


Q ss_pred             c
Q 044605          368 P  368 (405)
Q Consensus       368 ~  368 (405)
                      .
T Consensus       158 ~  158 (168)
T 2ell_A          158 E  158 (168)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.88  E-value=1.1e-11  Score=123.79  Aligned_cols=180  Identities=12%  Similarity=0.049  Sum_probs=107.8

Q ss_pred             eeeEEEEEccCCCCccCccccCCCccCcccCceeeCC------------CCCCCcccccccccCCCceEEcccccCCChh
Q 044605           25 FVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGK------------SNCSGLSELRSSTLLHEKLTILGLENVNVAE   92 (405)
Q Consensus        25 ~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~------------~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~   92 (405)
                      .++|+.|+|++|.++.+|.+|+++++|+.|+......            ........++.+.+|+ .|......      
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~-~L~~l~~n------  420 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK-AVDPMRAA------  420 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH-HHCGGGHH------
T ss_pred             CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcc-cCcchhhc------
Confidence            4677899999999999999999999999997421100            0011112223333332 22210000      


Q ss_pred             hhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC-CCCCC
Q 044605           93 DAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS-VGHLP  171 (405)
Q Consensus        93 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~  171 (405)
                           .+..+..    .......+..+. ...|+.|++.+|....+|. +.  .+++|+.|++++|. ++.+|. ++.++
T Consensus       421 -----~~~~L~~----l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~lp~-~~--~l~~L~~L~Ls~N~-l~~lp~~~~~l~  486 (567)
T 1dce_A          421 -----YLDDLRS----KFLLENSVLKME-YADVRVLHLAHKDLTVLCH-LE--QLLLVTHLDLSHNR-LRALPPALAALR  486 (567)
T ss_dssp             -----HHHHHHH----HHHHHHHHHHHH-HTTCSEEECTTSCCSSCCC-GG--GGTTCCEEECCSSC-CCCCCGGGGGCT
T ss_pred             -----ccchhhh----hhhhcccccccC-ccCceEEEecCCCCCCCcC-cc--ccccCcEeecCccc-ccccchhhhcCC
Confidence                 0000000    000001111111 1248889998888777886 55  78899999998887 667764 88889


Q ss_pred             CccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccC-CC---CCCcccEEEEeccC
Q 044605          172 LLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRL-PQ---HFSSLERIVIMSCE  234 (405)
Q Consensus       172 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l-~~---~~~~L~~L~l~~c~  234 (405)
                      +|+.|+++++. +..++.+       ..+++|++|+++++ .+++.. |.   .+++|+.|+++++.
T Consensus       487 ~L~~L~Ls~N~-l~~lp~l-------~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          487 CLEVLQASDNA-LENVDGV-------ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             TCCEEECCSSC-CCCCGGG-------TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCEEECCCCC-CCCCccc-------CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            99999998764 4445442       34888888888875 555332 43   46667777776653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.86  E-value=4.7e-12  Score=126.58  Aligned_cols=65  Identities=25%  Similarity=0.279  Sum_probs=34.1

Q ss_pred             cccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCccc--CCC-CCcCCccEEeecCC
Q 044605          294 ESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSF--PEN-GLLPSVVYLSIYLC  367 (405)
Q Consensus       294 ~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l--~~~-~~~~~L~~L~i~~c  367 (405)
                      +.+|..+.++++|+.|++++|.++.+| .       +.++++|++|++++|. ++.+  |.. ..+++|+.|+++++
T Consensus       476 ~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~-------l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          476 RALPPALAALRCLEVLQASDNALENVD-G-------VANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCCG-G-------GTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             cccchhhhcCCCCCEEECCCCCCCCCc-c-------cCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCC
Confidence            445555555556666666555555554 2       3555556666665543 3333  333 33445566666555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.81  E-value=2.9e-08  Score=84.88  Aligned_cols=102  Identities=13%  Similarity=0.214  Sum_probs=50.5

Q ss_pred             CcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc
Q 044605          223 SSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE  298 (405)
Q Consensus       223 ~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~  298 (405)
                      ++|+.|+++++.  .+|..|..+++|+.|++++|...     .++.+.|..+++|  |+++++          .++.++.
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~-----~i~~~~f~~l~~L~~L~Ls~N----------~l~~i~~   95 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-----TLSNQSFSNMTQLLTLILSYN----------RLRCIPP   95 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSS----------CCCBCCT
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCC-----EeCHhHccCCCCCCEEECCCC----------ccCEeCH
Confidence            445555555432  33455566677777777766433     2333334444444  444433          2233322


Q ss_pred             -ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          299 -GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       299 -~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                       .+..+++|+.|++++|.++.+|...|      ..+++|+.|++++|+
T Consensus        96 ~~f~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           96 RTFDGLKSLRLLSLHGNDISVVPEGAF------NDLSALSHLAIGANP  137 (193)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCTTTT------TTCTTCCEEECCSSC
T ss_pred             HHhCCCCCCCEEECCCCCCCeeChhhh------hcCccccEEEeCCCC
Confidence             34455555555555555555554332      444555555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=5.1e-08  Score=90.64  Aligned_cols=97  Identities=9%  Similarity=0.135  Sum_probs=66.9

Q ss_pred             CCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCcc-EEEEeCCcccc
Q 044605          243 LPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHIT-RISIVGSYLVS  318 (405)
Q Consensus       243 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~-~L~l~~~~l~~  318 (405)
                      +++|+.+++.+|...     .++...|..+.+|  +.+.+.  +         +.++. ++.++++|+ .+.+.+ .++.
T Consensus       225 ~~~L~~l~L~~n~i~-----~I~~~aF~~~~~L~~l~l~~n--i---------~~I~~~aF~~~~~L~~~l~l~~-~l~~  287 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-----TIPDFTFAQKKYLLKIKLPHN--L---------KTIGQRVFSNCGRLAGTLELPA-SVTA  287 (329)
T ss_dssp             CTTCCEEECTTBCCC-----EECTTTTTTCTTCCEEECCTT--C---------CEECTTTTTTCTTCCEEEEECT-TCCE
T ss_pred             cCCCeEEECCCCCcc-----eecHhhhhCCCCCCEEECCcc--c---------ceehHHHhhCChhccEEEEEcc-cceE
Confidence            678888888876533     6677778777777  666553  2         45544 567888888 888877 7777


Q ss_pred             cccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEe
Q 044605          319 FPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLS  363 (405)
Q Consensus       319 l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~  363 (405)
                      |+...|      .+|++|+++++.+ +.++.++..  ..+++|+.++
T Consensus       288 I~~~aF------~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          288 IEFGAF------MGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECTTTT------TTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred             Echhhh------hCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence            777665      7788888888766 356777654  3445666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.78  E-value=3.7e-08  Score=84.07  Aligned_cols=52  Identities=17%  Similarity=0.194  Sum_probs=30.6

Q ss_pred             cEEeeccCccccccCCC-CCCcccEEEEeccC--Cccc--cCCCCCCcceEEEcCcCCc
Q 044605          204 RELSIINCSKLKGRLPQ-HFSSLERIVIMSCE--QLLV--SCTTLPLLCELEIDGFGEV  257 (405)
Q Consensus       204 ~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c~--~l~~--~l~~l~~L~~L~l~~~~~l  257 (405)
                      +.+++++. .++ .+|. ..++|+.|+++++.  .++.  .|..+++|++|++++|...
T Consensus        11 ~~l~~s~~-~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~   67 (192)
T 1w8a_A           11 TTVDCTGR-GLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT   67 (192)
T ss_dssp             TEEECTTS-CCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC
T ss_pred             CEEEcCCC-CcC-cCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC
Confidence            56666663 444 4554 33467777777653  2222  2566777777777776443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.78  E-value=2.8e-09  Score=87.07  Aligned_cols=63  Identities=24%  Similarity=0.461  Sum_probs=42.3

Q ss_pred             cccccCCCCCccEEEEeCCcccccc--cCCCCCcccCCCCCCcCEEeeecCCCCcccCC----C-CCcCCccEEeecC
Q 044605          296 LPEGLHKLSHITRISIVGSYLVSFP--KGGLESLSFVRNLTSLERLELSRCPILKSFPE----N-GLLPSVVYLSIYL  366 (405)
Q Consensus       296 lp~~~~~l~~L~~L~l~~~~l~~l~--~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~----~-~~~~~L~~L~i~~  366 (405)
                      +|..+..+++|+.|++++|.++.++  ..       +.++++|++|++++|+ ++.++.    . ..+++|++|++++
T Consensus        80 ~~~~~~~l~~L~~L~ls~N~i~~~~~~~~-------~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEP-------LKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             THHHHHHCTTCCEEECTTSCCCSHHHHGG-------GGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             HHHHhhhCCCCCEEECCCCcCCChHHHHH-------HhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence            5555566788888888888777764  22       5677888888888864 555554    1 3345777777653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.73  E-value=7.2e-09  Score=84.53  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=32.4

Q ss_pred             cccCCCCCccEEEEeCCccccccc---CCCCCcccCCCCCCcCEEeeec
Q 044605          298 EGLHKLSHITRISIVGSYLVSFPK---GGLESLSFVRNLTSLERLELSR  343 (405)
Q Consensus       298 ~~~~~l~~L~~L~l~~~~l~~l~~---~~~~~l~~l~~l~~L~~L~l~~  343 (405)
                      ..+..+++|+.|++++|.++.++.   ..      +..+++|+.|++++
T Consensus       107 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------~~~l~~L~~L~l~d  149 (149)
T 2je0_A          107 EPLKKLENLKSLDLFNCEVTNLNDYRENV------FKLLPQLTYLDGYD  149 (149)
T ss_dssp             GGGGGCTTCCEEECTTCGGGGSTTHHHHH------HHHCTTCCEETTBC
T ss_pred             HHHhhCCCCCEEeCcCCcccchHHHHHHH------HHHCCCcccccCCC
Confidence            567899999999999999998875   22      46788999998763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.69  E-value=1.7e-08  Score=84.94  Aligned_cols=68  Identities=22%  Similarity=0.235  Sum_probs=48.2

Q ss_pred             ccccc-cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCC-----CCCcCCccEEeecCCc
Q 044605          295 SLPEG-LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE-----NGLLPSVVYLSIYLCP  368 (405)
Q Consensus       295 ~lp~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~-----~~~~~~L~~L~i~~c~  368 (405)
                      .+|.. +..+++|+.|++++|.++.+|.-..     +.++++|++|++++|+ ++.+|.     ...+++|++|+++++.
T Consensus        78 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-----l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           78 RIGEGLDQALPDLTELILTNNSLVELGDLDP-----LASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EECSCHHHHCTTCCEEECCSCCCCCGGGGGG-----GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             ccCcchhhcCCCCCEEECCCCcCCcchhhHh-----hhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            34433 3678888999998888888775101     5678889999998875 456664     2345688999988875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.69  E-value=1.8e-07  Score=78.50  Aligned_cols=62  Identities=31%  Similarity=0.427  Sum_probs=37.3

Q ss_pred             cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      +..+++|+.|++++|.++.++...|      .++++|++|++++| .++.++..  ..+++|++|++++++
T Consensus        72 ~~~l~~L~~L~l~~N~l~~~~~~~~------~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           72 FDKLTKLTILYLHENKLQSLPNGVF------DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCccCEEECCCCCccccCHHHh------hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence            4566667777776666666655432      55666777777665 34555543  334566777776654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.67  E-value=1.2e-07  Score=80.90  Aligned_cols=102  Identities=20%  Similarity=0.195  Sum_probs=83.3

Q ss_pred             CCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccc-cccCCCCCccEEEEeCCcccccc
Q 044605          244 PLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLVSFP  320 (405)
Q Consensus       244 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~l~  320 (405)
                      ++|++|++++|...     .++ ..|..+++|  |+++++          .++.++ ..+.++++|+.|++++|+++.++
T Consensus        31 ~~l~~L~L~~n~i~-----~ip-~~~~~l~~L~~L~Ls~N----------~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~   94 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-----LVP-KELSNYKHLTLIDLSNN----------RISTLSNQSFSNMTQLLTLILSYNRLRCIP   94 (193)
T ss_dssp             TTCCEEECCSSCCC-----SCC-GGGGGCTTCCEEECCSS----------CCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCCCEEECCCCcCc-----hhH-HHhhcccCCCEEECCCC----------cCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence            68999999998654     455 577888888  888887          456665 46889999999999999999998


Q ss_pred             cCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          321 KGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       321 ~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      ...|      .++++|++|++++| .++.++..  ..+++|+.|++.+.|
T Consensus        95 ~~~f------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           95 PRTF------DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             TTTT------TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             HHHh------CCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence            7654      78899999999996 56777764  456799999999875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.67  E-value=1.1e-07  Score=81.04  Aligned_cols=104  Identities=13%  Similarity=0.161  Sum_probs=58.2

Q ss_pred             CCcccEEeeccCccccccCCC----CCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCC
Q 044605          200 FPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSS  272 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l  272 (405)
                      ++++++|+++++ .+.+..+.    .+++|+.|+++++.  .+ +..|..+++|++|++++|....     ++       
T Consensus        28 ~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~-------   94 (192)
T 1w8a_A           28 PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-----IS-------   94 (192)
T ss_dssp             CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-----EC-------
T ss_pred             CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc-----cC-------
Confidence            347777777764 44422221    46677777777653  22 4556667777777777663321     11       


Q ss_pred             CCCeeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          273 NPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       273 ~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                                              |..+.++++|+.|++++|+++.++...      +..+++|++|++++|+.
T Consensus        95 ------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           95 ------------------------NKMFLGLHQLKTLNLYDNQISCVMPGS------FEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ------------------------SSSSTTCTTCCEEECCSSCCCEECTTS------STTCTTCCEEECTTCCB
T ss_pred             ------------------------HHHhcCCCCCCEEECCCCcCCeeCHHH------hhcCCCCCEEEeCCCCc
Confidence                                    123445666666666666666554333      25556666666666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.66  E-value=1.5e-08  Score=85.20  Aligned_cols=125  Identities=14%  Similarity=0.125  Sum_probs=85.2

Q ss_pred             CCcccEEeeccCccccccCCC---CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCC
Q 044605          200 FPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNP  274 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~  274 (405)
                      +++|++|+++++ .++ .++.   ..++|+.|+++++.  .+ ..+..+++|++|++++|...     .++.+.+..+++
T Consensus        18 ~~~L~~L~l~~n-~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~   89 (176)
T 1a9n_A           18 AVRDRELDLRGY-KIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-----RIGEGLDQALPD   89 (176)
T ss_dssp             TTSCEEEECTTS-CCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-----EECSCHHHHCTT
T ss_pred             cCCceEEEeeCC-CCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-----ccCcchhhcCCC
Confidence            678899999886 455 2443   34488888888764  23 56777888888888887654     445444466666


Q ss_pred             C--eeecCCCCccEEecCCCCccccc--ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          275 G--PEKSRTEVLPWEIGSPDQESLPE--GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       275 L--l~l~~~~~l~l~i~~~~l~~lp~--~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      |  ++++++          .++.+|.  .+..+++|+.|++++|.+..+|....   .-+..+++|+.|++++|.
T Consensus        90 L~~L~L~~N----------~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~---~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           90 LTELILTNN----------SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL---YVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCEEECCSC----------CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHH---HHHHHCTTCSEETTEECC
T ss_pred             CCEEECCCC----------cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHH---HHHHHCCccceeCCCcCC
Confidence            6  777766          4456665  67788888888888888877664200   003567888888888765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.65  E-value=1.7e-07  Score=78.63  Aligned_cols=105  Identities=25%  Similarity=0.276  Sum_probs=68.2

Q ss_pred             CcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccc
Q 044605          223 SSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLP  297 (405)
Q Consensus       223 ~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp  297 (405)
                      ++|+.|+++++.  .+ +..+..+++|++|++++|...     .++...+..+++|  ++++++          .++.+|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~N----------~l~~~~   92 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-----SLPDGVFDKLTKLTILYLHEN----------KLQSLP   92 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSS----------CCCCCC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-----EeChhHccCCCccCEEECCCC----------CccccC
Confidence            344444444432  11 123455666666666666433     4444455566666  666655          345555


Q ss_pred             c-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605          298 E-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK  348 (405)
Q Consensus       298 ~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~  348 (405)
                      . .+..+++|+.|++++|.++.+|...|      ..+++|++|++++|+...
T Consensus        93 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           93 NGVFDKLTQLKELALDTNQLKSVPDGIF------DRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSSCBCC
T ss_pred             HHHhhCCcccCEEECcCCcceEeCHHHh------cCCcccCEEEecCCCeec
Confidence            4 46789999999999999999887643      678999999999986543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.65  E-value=7.1e-08  Score=89.66  Aligned_cols=102  Identities=17%  Similarity=0.140  Sum_probs=45.1

Q ss_pred             CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC-CCCCCCCccEEeecCCCCCeeeCC--CCC-CCCCCC
Q 044605          123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP-SVGHLPLLKNLVIKGMGRMAKAGT--TGG-DQQAAK  198 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~--~~~-~~~~~~  198 (405)
                      .+++.|.+.+.....--.++. ..+++|+.|+++++. +..+. .-+.++.++.+.....    .++.  |.+ ......
T Consensus        25 ~~l~~L~l~g~i~~~~~~~l~-~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~   98 (329)
T 3sb4_A           25 NSITHLTLTGKLNAEDFRHLR-DEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK   98 (329)
T ss_dssp             HHCSEEEEEEEECHHHHHHHH-HSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred             CceeEEEEeccccHHHHHHHH-HhhccCeEEecCcce-eEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence            357777777643211111222 026778888888776 33110 1122333233332221    2332  100 000001


Q ss_pred             CCCcccEEeeccCccccccCCC----CCCcccEEEEecc
Q 044605          199 GFPCLRELSIINCSKLKGRLPQ----HFSSLERIVIMSC  233 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c  233 (405)
                      ++++|+++++.+  .++ .++.    .+++|+.+++.+.
T Consensus        99 g~~~L~~l~L~~--~i~-~I~~~aF~~~~~L~~l~l~~n  134 (329)
T 3sb4_A           99 GKQTLEKVILSE--KIK-NIEDAAFKGCDNLKICQIRKK  134 (329)
T ss_dssp             ECTTCCC-CBCT--TCC-EECTTTTTTCTTCCEEEBCCS
T ss_pred             ccCCCcEEECCc--ccc-chhHHHhhcCcccceEEcCCC
Confidence            267777777766  344 2332    4566777777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.55  E-value=4.4e-06  Score=79.66  Aligned_cols=140  Identities=11%  Similarity=0.052  Sum_probs=84.3

Q ss_pred             CcccEEEEecc-CCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc
Q 044605          223 SSLERIVIMSC-EQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE  298 (405)
Q Consensus       223 ~~L~~L~l~~c-~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~  298 (405)
                      .+|+.+.+... ..+ ...|..+++|+.+.+.++.........++...|..+.+|  +.+.+           .++.++.
T Consensus       248 ~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-----------~i~~I~~  316 (401)
T 4fdw_A          248 SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-----------SIRILGQ  316 (401)
T ss_dssp             CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-----------TCCEECT
T ss_pred             CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-----------ceEEEhh
Confidence            44555555331 122 345666777777777665321000003566667777666  55542           1245543


Q ss_pred             -ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC---CCcCCccEEeecCCcchHHHh
Q 044605          299 -GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN---GLLPSVVYLSIYLCPDLEEKC  374 (405)
Q Consensus       299 -~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~~l~~~~  374 (405)
                       ++.++++|+.+.+.. .++.|....|      .++ +|+++++.++ ....++..   +.+.++..|.+..- . .+.+
T Consensus       317 ~aF~~c~~L~~l~lp~-~l~~I~~~aF------~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~-~-~~~y  385 (401)
T 4fdw_A          317 GLLGGNRKVTQLTIPA-NVTQINFSAF------NNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE-S-VEKY  385 (401)
T ss_dssp             TTTTTCCSCCEEEECT-TCCEECTTSS------SSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG-G-HHHH
T ss_pred             hhhcCCCCccEEEECc-cccEEcHHhC------CCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH-H-HHHh
Confidence             677899999999954 4888887776      788 9999999986 44555443   34457888888762 2 2333


Q ss_pred             hcCccccccccc
Q 044605          375 KKDEREYCHLVA  386 (405)
Q Consensus       375 ~~~~~~~~~~i~  386 (405)
                      +  .+..|....
T Consensus       386 ~--~a~~W~~f~  395 (401)
T 4fdw_A          386 K--NANGWRDFT  395 (401)
T ss_dssp             H--HSTTGGGGG
T ss_pred             h--hccchhhhh
Confidence            3  345677653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.54  E-value=1e-07  Score=98.17  Aligned_cols=66  Identities=18%  Similarity=0.304  Sum_probs=35.1

Q ss_pred             cccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCCccEEeecCC
Q 044605          294 ESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPSVVYLSIYLC  367 (405)
Q Consensus       294 ~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c  367 (405)
                      +.+|..+.++++|+.|+|++|.++.||..       +.++++|++|++++| .++.+|.. ..+++|++|+++++
T Consensus       260 ~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~-------~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          260 TELPAEIKNLSNLRVLDLSHNRLTSLPAE-------LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCCGGGGGGTTCCEEECTTSCCSSCCSS-------GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred             cccChhhhCCCCCCEEeCcCCcCCccChh-------hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence            44555555555555555555555555544       345555555555554 34455543 33445555555555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.53  E-value=4.6e-08  Score=100.71  Aligned_cols=101  Identities=15%  Similarity=0.102  Sum_probs=50.9

Q ss_pred             CCcccEEeeccCccccccCCC---CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCC
Q 044605          200 FPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNP  274 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~  274 (405)
                      ++.|+.|+++++. +. .+|.   .+++|+.|+++++.  .+|..|..+++|++|++++|...     .+|. .+..+++
T Consensus       223 l~~L~~L~Ls~n~-l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-----~lp~-~~~~l~~  294 (727)
T 4b8c_D          223 DQLWHALDLSNLQ-IF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-----SLPA-ELGSCFQ  294 (727)
T ss_dssp             CCCCCEEECTTSC-CS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-----SCCS-SGGGGTT
T ss_pred             CCCCcEEECCCCC-CC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-----ccCh-hhcCCCC
Confidence            5555566655542 22 2332   34555555555442  33455556666666666666432     2222 3333444


Q ss_pred             C--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccc
Q 044605          275 G--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVS  318 (405)
Q Consensus       275 L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~  318 (405)
                      |  |++++|          .++.+|..+..+++|+.|++++|.++.
T Consensus       295 L~~L~L~~N----------~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          295 LKYFYFFDN----------MVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CSEEECCSS----------CCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCEEECCCC----------CCCccChhhhcCCCccEEeCCCCccCC
Confidence            4  444443          334555556666666666666665553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.43  E-value=3.2e-05  Score=73.71  Aligned_cols=229  Identities=10%  Similarity=0.049  Sum_probs=148.1

Q ss_pred             CccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC--CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605          124 GLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP--SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP  201 (405)
Q Consensus       124 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  201 (405)
                      +|+.+.+..+ ...++..-+. . .+|+.+.+.+  .++.++  .+..+++|+.+.+.++ .+..++.      .+....
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~-~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~------~aF~~~  203 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFF-N-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPA------STFVYA  203 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTT-T-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECT------TTTTTC
T ss_pred             CccEEEeCCC-ccEECHHhcC-C-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEech------hhEeec
Confidence            5777776543 2233332221 2 3688888864  356665  3777899999998763 4666655      122357


Q ss_pred             cccEEeeccCccccccCCC----CCCcccEEEEecc-CCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC
Q 044605          202 CLRELSIINCSKLKGRLPQ----HFSSLERIVIMSC-EQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG  275 (405)
Q Consensus       202 ~L~~L~l~~~~~l~~~l~~----~~~~L~~L~l~~c-~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L  275 (405)
                      +|+.+.+.+  .++ .++.    .+++|+.+.+... ..+ ...|.. .+|+.+.+.+.  +.    .++...|..+.+|
T Consensus       204 ~L~~l~lp~--~l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~--i~----~I~~~aF~~c~~L  273 (401)
T 4fdw_A          204 GIEEVLLPV--TLK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG--VT----NIASRAFYYCPEL  273 (401)
T ss_dssp             CCSEEECCT--TCC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT--CC----EECTTTTTTCTTC
T ss_pred             ccCEEEeCC--chh-eehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC--cc----EEChhHhhCCCCC
Confidence            888888864  244 2332    5778888888642 233 234444 78999999543  44    6778889888888


Q ss_pred             --eeecCCCCccEEecCCCCcccc-cccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCC
Q 044605          276 --PEKSRTEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE  352 (405)
Q Consensus       276 --l~l~~~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~  352 (405)
                        +.+.+....     ......++ .++.++++|+.+.+. +.++.|+...|      .+|++|+.+.+.+  .++.+..
T Consensus       274 ~~l~l~~~~~~-----~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF------~~c~~L~~l~lp~--~l~~I~~  339 (401)
T 4fdw_A          274 AEVTTYGSTFN-----DDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLL------GGNRKVTQLTIPA--NVTQINF  339 (401)
T ss_dssp             CEEEEESSCCC-----CCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTT------TTCCSCCEEEECT--TCCEECT
T ss_pred             CEEEeCCcccc-----CCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhh------cCCCCccEEEECc--cccEEcH
Confidence              777654210     00112344 477899999999998 55888888776      8899999999965  4777766


Q ss_pred             C--CCcCCccEEeecCC--cchHHHhhcCcccccccc-cccCeeEecce
Q 044605          353 N--GLLPSVVYLSIYLC--PDLEEKCKKDEREYCHLV-ADIPFVQLNHK  396 (405)
Q Consensus       353 ~--~~~~~L~~L~i~~c--~~l~~~~~~~~~~~~~~i-~~i~~~~~~~~  396 (405)
                      .  ..+ +|+.+++.+.  +.+       ....|..+ .+++.+.+...
T Consensus       340 ~aF~~~-~L~~l~l~~n~~~~l-------~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTTPPQV-------FEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             TSSSSS-CCCEEEECCSSCCBC-------CCSSCCCSCTTCCEEEECGG
T ss_pred             HhCCCC-CCCEEEEcCCCCccc-------ccccccCCCCCccEEEeCHH
Confidence            5  455 9999999986  222       22334444 46677777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.41  E-value=9.7e-07  Score=73.59  Aligned_cols=40  Identities=35%  Similarity=0.581  Sum_probs=24.6

Q ss_pred             cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      +..+++|+.|++++|+++.++...|      .++++|++|++++|+
T Consensus        74 f~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           74 FDKLTQLTQLSLNDNQLKSIPRGAF------DNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSSC
T ss_pred             ccCCCCCCEEECCCCccCEeCHHHh------cCCCCCCEEEeCCCC
Confidence            3566666666666666666665433      556666666666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.41  E-value=1.1e-06  Score=73.57  Aligned_cols=40  Identities=33%  Similarity=0.578  Sum_probs=23.3

Q ss_pred             cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      +.++++|+.|++++|+++.+|...|      .++++|++|++++|+
T Consensus        77 ~~~l~~L~~L~L~~N~l~~l~~~~~------~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           77 FDKLTQLTQLDLNDNHLKSIPRGAF------DNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCSEEECCSSC
T ss_pred             hCCcchhhEEECCCCccceeCHHHh------ccccCCCEEEeCCCC
Confidence            3456666666666666666655433      455566666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.35  E-value=3.5e-05  Score=73.20  Aligned_cols=42  Identities=7%  Similarity=-0.124  Sum_probs=33.0

Q ss_pred             cccccCchhhheeeEEEEEccCCCCccCccc-cCCCccCcccCc
Q 044605           14 METINGDFTEIFVIYLILVGDLTESKEMPLR-IGKLTSLRTLTK   56 (405)
Q Consensus        14 l~~l~~~~~~~~~~L~~L~L~~~~i~~lP~~-i~~L~~L~~L~~   56 (405)
                      +..|....|..+.+|+.+++.. .++.++.. |.++.+|+.+++
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~l  101 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINI  101 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECC
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEe
Confidence            4456677777889999999974 58888655 889999998864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.27  E-value=4.4e-06  Score=69.86  Aligned_cols=65  Identities=28%  Similarity=0.454  Sum_probs=54.6

Q ss_pred             ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          297 PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       297 p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      |..+.++++|+.|++++|+++.+|...|      .++++|++|++++| .++.++..  ..+++|++|++++++
T Consensus        50 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~------~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           50 PGVFDHLVNLQQLYFNSNKLTAIPTGVF------DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTT------TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             HHHhcCCcCCCEEECCCCCCCccChhHh------CCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence            4467899999999999999999987754      78899999999996 56777764  456799999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.25  E-value=5.6e-06  Score=68.88  Aligned_cols=68  Identities=29%  Similarity=0.459  Sum_probs=55.8

Q ss_pred             ccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          294 ESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       294 ~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      +.+ |..+.++++|+.|++++|+++.++...|      .++++|++|++++| .++.++..  ..+++|++|++++.|
T Consensus        43 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           43 TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF------DKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT------TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccChhhhcCcccCCEEECCCCCcCccChhhc------cCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            344 4567899999999999999999988754      78899999999996 56777654  456799999999864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.13  E-value=2.1e-08  Score=85.98  Aligned_cols=18  Identities=11%  Similarity=0.314  Sum_probs=8.4

Q ss_pred             CCCCccEEEEeCCccccc
Q 044605          302 KLSHITRISIVGSYLVSF  319 (405)
Q Consensus       302 ~l~~L~~L~l~~~~l~~l  319 (405)
                      .+++|+.|++++|.++.+
T Consensus       113 ~l~~L~~L~l~~N~i~~~  130 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             HHHHSSEEEESEEECCCH
T ss_pred             cCCCCCEEECCCCcCCch
Confidence            444445555544444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.12  E-value=0.00048  Score=65.27  Aligned_cols=64  Identities=14%  Similarity=0.148  Sum_probs=44.8

Q ss_pred             ccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecC
Q 044605          294 ESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYL  366 (405)
Q Consensus       294 ~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~  366 (405)
                      +.++. ++.++++|+++.+.+ .++.|....|      .+|.+|+.+.+..  .++.+...  ..+.+|+.+++.+
T Consensus       309 ~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          309 KFIGEEAFESCTSLVSIDLPY-LVEEIGKRSF------RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCT-TCCEECTTTT------TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred             ceechhhhcCCCCCCEEEeCC-cccEEhHHhc------cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence            44433 567888888888753 4777776665      7888888888864  36777655  5566888888754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.03  E-value=9.9e-06  Score=75.53  Aligned_cols=85  Identities=18%  Similarity=0.168  Sum_probs=49.7

Q ss_pred             CCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccc-cccCCCCCccEEEEeCCcc
Q 044605          240 CTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYL  316 (405)
Q Consensus       240 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l  316 (405)
                      ++.+++|+.|++++++.+.    .++.+.|..+++|  |+++++          +++.+| ..+.++++|+.|+|++|++
T Consensus        27 l~~~~~L~~L~l~~~n~l~----~~~~~~~~~l~~L~~L~l~~N----------~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKS----------GLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCC----EECGGGSCSCCCCSEEECCSS----------CCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             CCCCCCeeEEEccCCCCCC----CcChhHhccccCCCEEECCCC----------ccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            4455556666665422233    4444455555555  555554          334443 3567778888888888888


Q ss_pred             cccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          317 VSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       317 ~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      +.+|...|      ..++ |++|++.+|+
T Consensus        93 ~~~~~~~~------~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           93 ESLSWKTV------QGLS-LQELVLSGNP  114 (347)
T ss_dssp             SCCCSTTT------CSCC-CCEEECCSSC
T ss_pred             ceeCHHHc------ccCC-ceEEEeeCCC
Confidence            77776543      3333 7777777755

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.96  E-value=2.4e-05  Score=72.91  Aligned_cols=97  Identities=21%  Similarity=0.156  Sum_probs=73.7

Q ss_pred             eEEEcCcCCccccccccccCCCCCCCCC--eeecC-CCCccEEecCCCCcccc-cccCCCCCccEEEEeCCcccccccCC
Q 044605          248 ELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSR-TEVLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLVSFPKGG  323 (405)
Q Consensus       248 ~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~-~~~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~l~~~~  323 (405)
                      .++.+++..+.    .+|.  ++.+++|  |++++ +          .++.+| ..+.++++|+.|+|++|+++.++...
T Consensus        12 ~v~~~~~n~l~----~ip~--l~~~~~L~~L~l~~~n----------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   75 (347)
T 2ifg_A           12 GLRCTRDGALD----SLHH--LPGAENLTELYIENQQ----------HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA   75 (347)
T ss_dssp             CEECCSSCCCT----TTTT--SCSCSCCSEEECCSCS----------SCCEECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred             EEEcCCCCCCC----ccCC--CCCCCCeeEEEccCCC----------CCCCcChhHhccccCCCEEECCCCccceeCHHH
Confidence            34555543454    5665  7777788  88875 4          456676 47899999999999999999998765


Q ss_pred             CCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          324 LESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       324 ~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      |      .++++|++|++++| .++.+|..  ..+ +|+.|++.+++
T Consensus        76 ~------~~l~~L~~L~l~~N-~l~~~~~~~~~~~-~L~~l~l~~N~  114 (347)
T 2ifg_A           76 F------HFTPRLSRLNLSFN-ALESLSWKTVQGL-SLQELVLSGNP  114 (347)
T ss_dssp             G------GSCSCCCEEECCSS-CCSCCCSTTTCSC-CCCEEECCSSC
T ss_pred             h------cCCcCCCEEeCCCC-ccceeCHHHcccC-CceEEEeeCCC
Confidence            4      78899999999996 56778765  233 49999999864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.88  E-value=7.8e-08  Score=82.43  Aligned_cols=66  Identities=15%  Similarity=0.132  Sum_probs=51.8

Q ss_pred             cccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCC---CCCcCCccEEeecCCc
Q 044605          294 ESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPE---NGLLPSVVYLSIYLCP  368 (405)
Q Consensus       294 ~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~i~~c~  368 (405)
                      +.+|..+..+++|+.|++++|+++.+|.        +.++++|++|++++|. ++.++.   ...+++|++|++++++
T Consensus        83 ~~l~~~~~~~~~L~~L~L~~N~l~~l~~--------~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A           83 KKIENLDAVADTLEELWISYNQIASLSG--------IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             CSCSSHHHHHHHCSEEEEEEEECCCHHH--------HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             ccccchhhcCCcCCEEECcCCcCCcCCc--------cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence            3455556677899999999999988872        4778899999999974 565543   2556799999999985

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.76  E-value=1.3e-05  Score=66.46  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=17.5

Q ss_pred             cccEEEEeccCCc----cccCCCCCCcceEEEcCcCCc
Q 044605          224 SLERIVIMSCEQL----LVSCTTLPLLCELEIDGFGEV  257 (405)
Q Consensus       224 ~L~~L~l~~c~~l----~~~l~~l~~L~~L~l~~~~~l  257 (405)
                      +|++|++++|..+    ...+..+++|++|++++|+.+
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCC
Confidence            4555555555544    122344566666666666544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.75  E-value=1.3e-05  Score=75.10  Aligned_cols=15  Identities=20%  Similarity=0.399  Sum_probs=7.0

Q ss_pred             CCCccEEEEeCCccc
Q 044605          303 LSHITRISIVGSYLV  317 (405)
Q Consensus       303 l~~L~~L~l~~~~l~  317 (405)
                      +++|++|+++.|.++
T Consensus       278 ~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          278 LPQLETMDISAGVLT  292 (362)
T ss_dssp             GGGCSEEECCSSCCB
T ss_pred             CCCCCEEECCCCCCC
Confidence            344555555444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.71  E-value=1.9e-05  Score=74.09  Aligned_cols=128  Identities=18%  Similarity=0.173  Sum_probs=68.0

Q ss_pred             cCCCCCCccEEEEEeeCCC----------CCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeee
Q 044605          118 MLKPHYGLKELKVQNYGGT----------KFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKA  187 (405)
Q Consensus       118 ~l~~~~~L~~L~l~~~~~~----------~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~  187 (405)
                      +...+++|+.|.+.+....          .++.++.  .+++|++|++.++... .++.+ .+++|++|.+..+.-....
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~--~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH--TCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHh--cCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHH
Confidence            3444568888887653221          1112222  5678888888876432 34443 3788888888755321111


Q ss_pred             CC-CCCCCCCCCCCCcccEEeeccCcc-------ccc---cCC-CCCCcccEEEEeccCCc---cc---cCCCCCCcceE
Q 044605          188 GT-TGGDQQAAKGFPCLRELSIINCSK-------LKG---RLP-QHFSSLERIVIMSCEQL---LV---SCTTLPLLCEL  249 (405)
Q Consensus       188 ~~-~~~~~~~~~~~~~L~~L~l~~~~~-------l~~---~l~-~~~~~L~~L~l~~c~~l---~~---~l~~l~~L~~L  249 (405)
                      .. ++     ...+|+|++|+++.+..       +.+   .+. ..+|+|+.|.+.+|...   ..   ..+.+|+|++|
T Consensus       210 l~~l~-----~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L  284 (362)
T 2ra8_A          210 VEDIL-----GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM  284 (362)
T ss_dssp             HHHHH-----HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE
T ss_pred             HHHHH-----HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE
Confidence            00 00     11378888888753111       110   111 24677888877776532   11   11346777777


Q ss_pred             EEcCc
Q 044605          250 EIDGF  254 (405)
Q Consensus       250 ~l~~~  254 (405)
                      +++.|
T Consensus       285 dLs~n  289 (362)
T 2ra8_A          285 DISAG  289 (362)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            77654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.71  E-value=3.1e-05  Score=64.30  Aligned_cols=83  Identities=12%  Similarity=0.196  Sum_probs=58.6

Q ss_pred             CCccEEEEEcCCCCCc--CCCCCCCCCccEEeecCCCCCeeeCC--CCCCCCCC-CCCCcccEEeeccCccccc----cC
Q 044605          148 ENLVVLRFRNCNQCTS--LPSVGHLPLLKNLVIKGMGRMAKAGT--TGGDQQAA-KGFPCLRELSIINCSKLKG----RL  218 (405)
Q Consensus       148 ~~L~~L~l~~~~~~~~--l~~l~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~-~~~~~L~~L~l~~~~~l~~----~l  218 (405)
                      -.|+.|++++|. +++  +..+..+++|++|++.+|..+.+.+.  +..    . ...++|++|++++|..+++    .+
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~----~~~~~~~L~~L~Ls~C~~ITD~Gl~~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ----LENLQKSMLEMEIISCGNVTDKGIIAL  135 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT----CHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh----cccccCCCCEEEcCCCCcCCHHHHHHH
Confidence            458888888887 654  34577888999999988877665432  111    0 0135799999999987775    22


Q ss_pred             CCCCCcccEEEEeccCCc
Q 044605          219 PQHFSSLERIVIMSCEQL  236 (405)
Q Consensus       219 ~~~~~~L~~L~l~~c~~l  236 (405)
                      . .+++|+.|++++|+.+
T Consensus       136 ~-~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          136 H-HFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             G-GCTTCCEEEEESCTTC
T ss_pred             h-cCCCCCEEECCCCCCC
Confidence            2 5789999999999866

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.50  E-value=0.014  Score=54.98  Aligned_cols=105  Identities=15%  Similarity=0.173  Sum_probs=71.3

Q ss_pred             ccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCC
Q 044605          238 VSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGS  314 (405)
Q Consensus       238 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~  314 (405)
                      ..|..+..|+.+.+.+.  +.    .+....|..+..|  +.+..           .++.++. ++.++.+|+++.|.. 
T Consensus       259 ~aF~~c~~L~~i~lp~~--~~----~I~~~aF~~c~~L~~i~l~~-----------~i~~I~~~aF~~c~~L~~i~lp~-  320 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDS--VV----SIGTGAFMNCPALQDIEFSS-----------RITELPESVFAGCISLKSIDIPE-  320 (394)
T ss_dssp             TTTTTCSSCCEEECCTT--CC----EECTTTTTTCTTCCEEECCT-----------TCCEECTTTTTTCTTCCEEECCT-
T ss_pred             ceeeecccccEEecccc--cc----eecCcccccccccccccCCC-----------cccccCceeecCCCCcCEEEeCC-
Confidence            35666778888877543  22    4455566666666  44432           2245554 667889999998864 


Q ss_pred             cccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          315 YLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       315 ~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      .++.|.+..|      .+|.+|+++.+-+  .++.+...  ..+++|+.+++.+..
T Consensus       321 ~v~~I~~~aF------~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          321 GITQILDDAF------AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TCCEECTTTT------TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             cccEehHhHh------hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence            4777777765      7888999999854  46777665  566789999988753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.43  E-value=1.9e-06  Score=81.42  Aligned_cols=46  Identities=17%  Similarity=0.091  Sum_probs=24.8

Q ss_pred             ccccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCC
Q 044605          297 PEGLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCP  345 (405)
Q Consensus       297 p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~  345 (405)
                      +..+...++|+.|++++|.+++....   .++. +...++|++|++++|+
T Consensus       204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~---~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          204 AAQLDRNRQLQELNVAYNGAGDTAAL---ALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHGGGCSCCCEEECCSSCCCHHHHH---HHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHhcCCCcCeEECCCCCCCHHHHH---HHHHHHHhCCCCCEEeccCCC
Confidence            33445556777777777666542110   0000 2345677777777764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.15  E-value=0.052  Score=50.65  Aligned_cols=58  Identities=14%  Similarity=0.107  Sum_probs=32.2

Q ss_pred             ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEee
Q 044605          299 GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSI  364 (405)
Q Consensus       299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i  364 (405)
                      ++.++++|+.+.+.++.++.|++..|      .+|.+|+.+.+.+  .++.+...  ..+.+|+.+.+
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVF------MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTT------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred             ccccccccccccccccccceehhhhh------cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence            44566666666666666666665554      5666666666642  34445433  33344554444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.11  E-value=3e-05  Score=73.09  Aligned_cols=69  Identities=22%  Similarity=0.214  Sum_probs=46.5

Q ss_pred             cccccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCCCCcccC-----CC-CCcCCccEEeecCCc
Q 044605          296 LPEGLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCPILKSFP-----EN-GLLPSVVYLSIYLCP  368 (405)
Q Consensus       296 lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~~l~~l~-----~~-~~~~~L~~L~i~~c~  368 (405)
                      ++..+...++|++|++++|.+++..-   ..++. +...++|++|++++|. +++..     .. ...++|++|++++|+
T Consensus       175 l~~~L~~~~~L~~L~Ls~N~l~~~g~---~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          175 LMEGLAGNTSVTHLSLLHTGLGDEGL---ELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHTCSSCCEEECTTSSCHHHHH---HHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHhcCCCcCEEeCCCCCCCcHHH---HHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            44456688999999999988875310   01111 4567899999999975 44332     11 123689999999985

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.80  E-value=0.13  Score=48.23  Aligned_cols=58  Identities=10%  Similarity=0.194  Sum_probs=42.3

Q ss_pred             ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeec
Q 044605          299 GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIY  365 (405)
Q Consensus       299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~  365 (405)
                      ++.++++|+.+.+. +.++.|+...|      .+|.+|+.+.+.+  .++.+...  ..+.+|+.+.+.
T Consensus       283 aF~~c~~L~~i~l~-~~i~~I~~~aF------~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          283 AFMNCPALQDIEFS-SRITELPESVF------AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             TTTTCTTCCEEECC-TTCCEECTTTT------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEC
T ss_pred             ccccccccccccCC-CcccccCceee------cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEEC
Confidence            55677888888774 55777777765      7889999999864  46777655  455678888774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.33  E-value=0.0016  Score=57.91  Aligned_cols=50  Identities=22%  Similarity=0.321  Sum_probs=32.7

Q ss_pred             cccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccC
Q 044605          296 LPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFP  351 (405)
Q Consensus       296 lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~  351 (405)
                      +|..+..+++|+.|++++|+++++.+     +..+..+ +|++|++++|+.-..+|
T Consensus       188 l~~~~~~l~~L~~L~Ls~N~i~~~~~-----l~~l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          188 MSSIVQKAPNLKILNLSGNELKSERE-----LDKIKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             GTTHHHHSTTCCEEECTTSCCCSGGG-----GGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred             chhHHhhCCCCCEEECCCCccCCchh-----hhhcccC-CcceEEccCCcCccccC
Confidence            44455678888888888888877632     1112334 78888888877555444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.46  E-value=0.0014  Score=55.04  Aligned_cols=62  Identities=11%  Similarity=0.178  Sum_probs=34.3

Q ss_pred             ccCCCCCccEEEEeCCcccc-----cccCCCCCcccCCCCCCcCEEee--ecCCCCccc-----CCC-CCcCCccEEeec
Q 044605          299 GLHKLSHITRISIVGSYLVS-----FPKGGLESLSFVRNLTSLERLEL--SRCPILKSF-----PEN-GLLPSVVYLSIY  365 (405)
Q Consensus       299 ~~~~l~~L~~L~l~~~~l~~-----l~~~~~~~l~~l~~l~~L~~L~l--~~c~~l~~l-----~~~-~~~~~L~~L~i~  365 (405)
                      .+...++|++|++++|.+.+     +...       +...++|++|++  ++|. +++-     ... ...++|++|+++
T Consensus        88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~-------L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~  159 (185)
T 1io0_A           88 MLKVNNTLKSLNVESNFISGSGILALVEA-------LQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYH  159 (185)
T ss_dssp             HHHHCSSCCEEECCSSCCCHHHHHHHHHG-------GGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHhCCCcCEEECcCCcCCHHHHHHHHHH-------HHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEecc
Confidence            34455667777777766654     2222       445567777777  4443 3321     111 112467788877


Q ss_pred             CCc
Q 044605          366 LCP  368 (405)
Q Consensus       366 ~c~  368 (405)
                      +|.
T Consensus       160 ~n~  162 (185)
T 1io0_A          160 FTQ  162 (185)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.28  E-value=0.0012  Score=55.50  Aligned_cols=45  Identities=13%  Similarity=0.082  Sum_probs=24.8

Q ss_pred             cccCCCCCccEEEE--eCCcccccccCCCCCccc-CCCCCCcCEEeeecCC
Q 044605          298 EGLHKLSHITRISI--VGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCP  345 (405)
Q Consensus       298 ~~~~~l~~L~~L~l--~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~  345 (405)
                      ..+...++|++|++  ++|.+.+--   ...+.. +...++|++|++++|.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g---~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNV---EMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHH---HHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHH---HHHHHHHHHhCCCcCEEeccCCC
Confidence            34556667788888  556665310   000000 3445678888887754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.43  E-value=0.015  Score=51.66  Aligned_cols=62  Identities=19%  Similarity=0.159  Sum_probs=46.5

Q ss_pred             CCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCCCCcccCCCCCcC--CccEEeecCCc
Q 044605          301 HKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCPILKSFPENGLLP--SVVYLSIYLCP  368 (405)
Q Consensus       301 ~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~--~L~~L~i~~c~  368 (405)
                      .++++|+.|++++|+++.++.     ++. +..+++|+.|++++| .++.+.....+.  +|++|++.++|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~-----l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDD-----MSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGG-----GTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTST
T ss_pred             hhCCCCCEEECCCCCCCCCcc-----chhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCc
Confidence            478999999999999987652     110 357899999999986 556653332223  89999999998

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.34  E-value=0.037  Score=43.24  Aligned_cols=47  Identities=28%  Similarity=0.432  Sum_probs=35.7

Q ss_pred             CCc--ccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          292 DQE--SLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       292 ~l~--~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                      +++  .+|..+  -++|+.|+|++|+++.|+...|      ..+++|++|++.+|+.
T Consensus        19 ~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f------~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           19 GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLL------DALPALRTAHLGANPW   67 (130)
T ss_dssp             CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTG------GGCTTCCEEECCSSCC
T ss_pred             CCccccCCCCC--CcCCCEEECCCCcCCccChhhh------hhccccCEEEecCCCe
Confidence            455  677532  2368999999999999988765      6777899999998763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.61  E-value=4.4  Score=37.30  Aligned_cols=59  Identities=5%  Similarity=0.065  Sum_probs=42.4

Q ss_pred             ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeec
Q 044605          299 GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIY  365 (405)
Q Consensus       299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~  365 (405)
                      ++.++.+|+.+.+.. .++.++...|      .+|.+|+.+.+.+ ..++.++..  ..+.+|+.+.+.
T Consensus       258 aF~~~~~l~~i~l~~-~i~~i~~~aF------~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          258 LLQNCTALKTLNFYA-KVKTVPYLLC------SGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTTCTTCCEEEECC-CCSEECTTTT------TTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccceeehhccccccc-cceecccccc------ccccccccccccc-cccceehhhhhcCCCCCCEEEcC
Confidence            566788888888854 4667776655      7889999999976 356777655  445677777774

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=86.65  E-value=0.85  Score=35.27  Aligned_cols=51  Identities=20%  Similarity=0.234  Sum_probs=38.9

Q ss_pred             EEEEeCCccc--ccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          308 RISIVGSYLV--SFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       308 ~L~l~~~~l~--~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      .++-++++++  .+|..    +     -++|++|++++| .++.++.+  ..+++|++|++.+.|
T Consensus        12 ~v~Cs~~~L~~~~vP~~----l-----p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA----F-----PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSC----C-----CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCC----C-----CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence            5566678888  88854    1     257999999985 68888876  345699999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.69
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.68
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.64
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.56
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.54
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.53
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.49
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.47
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.46
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.45
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.44
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.39
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.38
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.36
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.34
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.31
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.26
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.24
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.18
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.86
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.82
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.94
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.77
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.51
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	93.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	90.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	82.44

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2e-17  Score=155.44  Aligned_cols=300  Identities=15%  Similarity=0.134  Sum_probs=175.7

Q ss_pred             hheeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhcccccc
Q 044605           23 EIFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTS  102 (405)
Q Consensus        23 ~~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l  102 (405)
                      +.+++|++||+++|+|+.+|. ++++++|++|++...   ....+..++.+++|+ .+.+....................
T Consensus        63 ~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n---~i~~i~~l~~l~~L~-~L~~~~~~~~~~~~~~~~~~~~~~  137 (384)
T d2omza2          63 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN---QIADITPLANLTNLT-GLTLFNNQITDIDPLKNLTNLNRL  137 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS---CCCCCGGGTTCTTCC-EEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccc---ccccccccccccccc-cccccccccccccccccccccccc
Confidence            357888899999888888874 888888888864322   223345566666666 666543221111000000000000


Q ss_pred             cC-----ChhhHH------------HHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCC
Q 044605          103 SD-----SREVAE------------IQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLP  165 (405)
Q Consensus       103 ~~-----~~~~~~------------~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~  165 (405)
                      ..     ......            ........+.............+.. .......  .+++++.++++++. ++.++
T Consensus       138 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~l~~~~~l~l~~n~-i~~~~  213 (384)
T d2omza2         138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV-SDISVLA--KLTNLESLIATNNQ-ISDIT  213 (384)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC-CCCGGGG--GCTTCSEEECCSSC-CCCCG
T ss_pred             ccccccccccccccccccccccccccccchhhhhcccccccccccccccc-ccccccc--cccccceeeccCCc-cCCCC
Confidence            00     000000            0000000011111111111111111 1112222  57888888888776 66666


Q ss_pred             CCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC-CCCCcccEEEEeccCCc-cccCCCC
Q 044605          166 SVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP-QHFSSLERIVIMSCEQL-LVSCTTL  243 (405)
Q Consensus       166 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~-~~~~~L~~L~l~~c~~l-~~~l~~l  243 (405)
                      +.+..++|+.|++.++. +..++.       ...+++|+.|++.++ .+.+..+ ..+++|+.++++++.-. ...+..+
T Consensus       214 ~~~~~~~L~~L~l~~n~-l~~~~~-------l~~l~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  284 (384)
T d2omza2         214 PLGILTNLDELSLNGNQ-LKDIGT-------LASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISPLAGL  284 (384)
T ss_dssp             GGGGCTTCCEEECCSSC-CCCCGG-------GGGCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             cccccCCCCEEECCCCC-CCCcch-------hhcccccchhccccC-ccCCCCcccccccCCEeeccCcccCCCCccccc
Confidence            66778888999888763 444433       234788889988886 3443222 26788899988775421 2356678


Q ss_pred             CCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCccccccc
Q 044605          244 PLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPK  321 (405)
Q Consensus       244 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~  321 (405)
                      +.++.+.+.++....     +  ..+..+..+  ++++++          +++.++ .+..+++|++|++++|+++.++.
T Consensus       285 ~~l~~l~~~~n~l~~-----~--~~~~~~~~l~~L~ls~n----------~l~~l~-~l~~l~~L~~L~L~~n~l~~l~~  346 (384)
T d2omza2         285 TALTNLELNENQLED-----I--SPISNLKNLTYLTLYFN----------NISDIS-PVSSLTKLQRLFFANNKVSDVSS  346 (384)
T ss_dssp             TTCSEEECCSSCCSC-----C--GGGGGCTTCSEEECCSS----------CCSCCG-GGGGCTTCCEEECCSSCCCCCGG
T ss_pred             ccccccccccccccc-----c--cccchhcccCeEECCCC----------CCCCCc-ccccCCCCCEEECCCCCCCCChh
Confidence            888888888775432     1  123444455  666665          345554 37789999999999999988762


Q ss_pred             CCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCC
Q 044605          322 GGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLC  367 (405)
Q Consensus       322 ~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c  367 (405)
                              +.++++|++|++++| .++.++....+++|+.|++++.
T Consensus       347 --------l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         347 --------LANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             --------GGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred             --------HcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence                    578999999999986 5677765555679999999863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=4.7e-16  Score=141.54  Aligned_cols=253  Identities=15%  Similarity=0.121  Sum_probs=125.7

Q ss_pred             cccccCchhhheeeEEEEEccCCCCccCcc-ccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChh
Q 044605           14 METINGDFTEIFVIYLILVGDLTESKEMPL-RIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAE   92 (405)
Q Consensus        14 l~~l~~~~~~~~~~L~~L~L~~~~i~~lP~-~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~   92 (405)
                      +..+|.++.   +.+++|+|++|+|+++|+ .|.++.+|++|++...... ....                         
T Consensus        22 L~~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~-------------------------   72 (305)
T d1xkua_          22 LEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISP-------------------------   72 (305)
T ss_dssp             CCSCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCT-------------------------
T ss_pred             CCccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccch-------------------------
Confidence            566777653   578888888888888886 4888888888863211110 0001                         


Q ss_pred             hhhhcccccccCChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCC
Q 044605           93 DAKEGNRTTSSDSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHL  170 (405)
Q Consensus        93 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l  170 (405)
                                              ..+..+++|+.|++.++....+|.+.    ...++.|...++. +..++.  +...
T Consensus        73 ------------------------~~f~~l~~L~~L~l~~n~l~~l~~~~----~~~l~~L~~~~n~-l~~l~~~~~~~~  123 (305)
T d1xkua_          73 ------------------------GAFAPLVKLERLYLSKNQLKELPEKM----PKTLQELRVHENE-ITKVRKSVFNGL  123 (305)
T ss_dssp             ------------------------TTTTTCTTCCEEECCSSCCSBCCSSC----CTTCCEEECCSSC-CCBBCHHHHTTC
T ss_pred             ------------------------hhhhCCCccCEecccCCccCcCccch----hhhhhhhhccccc-hhhhhhhhhhcc
Confidence                                    11333455666666666555555432    3456666666554 444432  3334


Q ss_pred             CCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC-CCCcccEEEEeccCCc---cccCCCCCCc
Q 044605          171 PLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ-HFSSLERIVIMSCEQL---LVSCTTLPLL  246 (405)
Q Consensus       171 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~-~~~~L~~L~l~~c~~l---~~~l~~l~~L  246 (405)
                      ..+..+....+........    ......+++|+.+++.++ .+. .+|. .+++|+.|++.++...   +..+..++.+
T Consensus       124 ~~~~~l~~~~n~~~~~~~~----~~~~~~l~~L~~l~l~~n-~l~-~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l  197 (305)
T d1xkua_         124 NQMIVVELGTNPLKSSGIE----NGAFQGMKKLSYIRIADT-NIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL  197 (305)
T ss_dssp             TTCCEEECCSSCCCGGGBC----TTGGGGCTTCCEEECCSS-CCC-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred             ccccccccccccccccCCC----ccccccccccCccccccC-Ccc-ccCcccCCccCEEECCCCcCCCCChhHhhccccc
Confidence            4455555443321111100    001223556666666664 233 2332 4566666666654322   3455566667


Q ss_pred             ceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCC
Q 044605          247 CELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGL  324 (405)
Q Consensus       247 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~  324 (405)
                      ++|++++|...     .++...+.++++|  |++++|          +++.+|.++..+++|+.|++++|+++.|+...|
T Consensus       198 ~~L~~s~n~l~-----~~~~~~~~~l~~L~~L~L~~N----------~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         198 AKLGLSFNSIS-----AVDNGSLANTPHLRELHLNNN----------KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             CEEECCSSCCC-----EECTTTGGGSTTCCEEECCSS----------CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             ccccccccccc-----ccccccccccccceeeecccc----------cccccccccccccCCCEEECCCCccCccChhhc
Confidence            77777665333     2333334434444  444443          233444444455555555555555555544433


Q ss_pred             CCcccCCCCCCcCEEeeecCC
Q 044605          325 ESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       325 ~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      .........++|+.|++++|+
T Consensus       263 ~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         263 CPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SCSSCCTTSCCCSEEECCSSS
T ss_pred             cCcchhcccCCCCEEECCCCc
Confidence            222222334444444444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.8e-16  Score=145.79  Aligned_cols=298  Identities=15%  Similarity=0.143  Sum_probs=189.6

Q ss_pred             heeeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccccc
Q 044605           24 IFVIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSS  103 (405)
Q Consensus        24 ~~~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~  103 (405)
                      .+.++++|+++++.|+.+ ++|+.+++|++|++...   ....+..++++.+|+ +|.+.+.. +....           
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N---~l~~l~~l~~L~~L~-~L~L~~n~-i~~i~-----------  104 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNN---QLTDITPLKNLTKLV-DILMNNNQ-IADIT-----------  104 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSS---CCCCCGGGTTCTTCC-EEECCSSC-CCCCG-----------
T ss_pred             HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCC---cCCCCccccCCcccc-cccccccc-ccccc-----------
Confidence            356899999999999988 58999999999985332   333455677778787 88776532 11111           


Q ss_pred             CChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCC--------------------------------------
Q 044605          104 DSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQS--------------------------------------  145 (405)
Q Consensus       104 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~--------------------------------------  145 (405)
                                    .+..+++|+.+++.++....++......                                      
T Consensus       105 --------------~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (384)
T d2omza2         105 --------------PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP  170 (384)
T ss_dssp             --------------GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG
T ss_pred             --------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence                          1233445555554443332222111100                                      


Q ss_pred             --CCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC--CC
Q 044605          146 --SFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP--QH  221 (405)
Q Consensus       146 --~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~--~~  221 (405)
                        ..+.........+. .........+++++.+.+.++. +..+..       ...+++|++|++.++ .+++ ++  ..
T Consensus       171 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~l~l~~n~-i~~~~~-------~~~~~~L~~L~l~~n-~l~~-~~~l~~  239 (384)
T d2omza2         171 LANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQ-ISDITP-------LGILTNLDELSLNGN-QLKD-IGTLAS  239 (384)
T ss_dssp             GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGG-------GGGCTTCCEEECCSS-CCCC-CGGGGG
T ss_pred             hccccccccccccccc-cccccccccccccceeeccCCc-cCCCCc-------ccccCCCCEEECCCC-CCCC-cchhhc
Confidence              01111111111111 1112234557888888887753 333322       334789999999986 4552 43  26


Q ss_pred             CCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccccc
Q 044605          222 FSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPE  298 (405)
Q Consensus       222 ~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~  298 (405)
                      +++|+.+++.++.-. ...+..+++|++|++++++...     ++  .+..+..+  +..+.+          .+..++ 
T Consensus       240 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~-----~~--~~~~~~~l~~l~~~~n----------~l~~~~-  301 (384)
T d2omza2         240 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-----IS--PLAGLTALTNLELNEN----------QLEDIS-  301 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-----CG--GGTTCTTCSEEECCSS----------CCSCCG-
T ss_pred             ccccchhccccCccCCCCcccccccCCEeeccCcccCC-----CC--cccccccccccccccc----------cccccc-
Confidence            899999999986522 2357789999999999886543     11  24444445  555554          233333 


Q ss_pred             ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCcchHHHhhcCc
Q 044605          299 GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCKKDE  378 (405)
Q Consensus       299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~~~~  378 (405)
                      .+..+++++.|++++++++.++.        +.++++|++|++++| .++.++....+++|++|++++|. ++..     
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~l~~--------l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~l~~N~-l~~l-----  366 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISDISP--------VSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSAGHNQ-ISDL-----  366 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSCCGG--------GGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCBC-----
T ss_pred             ccchhcccCeEECCCCCCCCCcc--------cccCCCCCEEECCCC-CCCCChhHcCCCCCCEEECCCCc-CCCC-----
Confidence            46788999999999999988753        478899999999998 57777755566899999999883 3221     


Q ss_pred             ccccccccccCeeEecceE
Q 044605          379 REYCHLVADIPFVQLNHKL  397 (405)
Q Consensus       379 ~~~~~~i~~i~~~~~~~~~  397 (405)
                       ..+..+++++.+.+.+++
T Consensus       367 -~~l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         367 -TPLANLTRITQLGLNDQA  384 (384)
T ss_dssp             -GGGTTCTTCSEEECCCEE
T ss_pred             -hhhccCCCCCEeeCCCCc
Confidence             225667888999988764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.64  E-value=3.1e-16  Score=143.32  Aligned_cols=239  Identities=18%  Similarity=0.172  Sum_probs=119.3

Q ss_pred             eEEEEEccCCCCc---cCccccCCCccCcccCceeeCCCCCCCcccccccccCCCceEEcccccCCChhhhhhccccccc
Q 044605           27 IYLILVGDLTESK---EMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRSSTLLHEKLTILGLENVNVAEDAKEGNRTTSS  103 (405)
Q Consensus        27 ~L~~L~L~~~~i~---~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~  103 (405)
                      +++.|||+++.++   .+|.+|++|++|++|++.....-.+..+.++++|++|+ +|.                      
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~-~L~----------------------  107 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH-YLY----------------------  107 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCS-EEE----------------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccc-hhh----------------------
Confidence            6899999999876   58999999999999986443322223344455555554 444                      


Q ss_pred             CChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCC-cccCCCCCCCccEEEEEcCCCCCcCC-CCCCCCCccEEeecCC
Q 044605          104 DSREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFP-AWLGQSSFENLVVLRFRNCNQCTSLP-SVGHLPLLKNLVIKGM  181 (405)
Q Consensus       104 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~  181 (405)
                                                +.++.....+ ..+.  .+..|+.+++++|.....+| .++.++.|+++++.++
T Consensus       108 --------------------------Ls~N~l~~~~~~~~~--~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_         108 --------------------------ITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             --------------------------EEEECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             --------------------------hcccccccccccccc--chhhhcccccccccccccCchhhccCcccceeecccc
Confidence                                      4444332221 1122  34555555555554333333 2555556666665554


Q ss_pred             CCCeeeCC-CCCCCCCCCCCCcc-cEEeeccCccccccCCCCCCcc--cEEEEeccC---CccccCCCCCCcceEEEcCc
Q 044605          182 GRMAKAGT-TGGDQQAAKGFPCL-RELSIINCSKLKGRLPQHFSSL--ERIVIMSCE---QLLVSCTTLPLLCELEIDGF  254 (405)
Q Consensus       182 ~~l~~~~~-~~~~~~~~~~~~~L-~~L~l~~~~~l~~~l~~~~~~L--~~L~l~~c~---~l~~~l~~l~~L~~L~l~~~  254 (405)
                      .....++. ++       .++++ +.+.+.+ ..+++..|..+.++  ..+++..+.   ..+..+..+++++.+++.++
T Consensus       160 ~l~~~ip~~~~-------~l~~l~~~l~~~~-n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         160 RISGAIPDSYG-------SFSKLFTSMTISR-NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CCEEECCGGGG-------CCCTTCCEEECCS-SEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             ccccccccccc-------ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            43333333 11       13333 4444443 24443344333222  233333322   22445555666666666665


Q ss_pred             CCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCc-ccccccCCCCCccEEEEeCCccc-ccccCCCCCcccC
Q 044605          255 GEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQE-SLPEGLHKLSHITRISIVGSYLV-SFPKGGLESLSFV  330 (405)
Q Consensus       255 ~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~-~lp~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~l~~l  330 (405)
                      ....    .++  .+..++.+  ++++++          +++ .+|.++.++++|+.|++++|+++ .+|.        +
T Consensus       232 ~l~~----~~~--~~~~~~~L~~L~Ls~N----------~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--------~  287 (313)
T d1ogqa_         232 SLAF----DLG--KVGLSKNLNGLDLRNN----------RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--------G  287 (313)
T ss_dssp             EECC----BGG--GCCCCTTCCEEECCSS----------CCEECCCGGGGGCTTCCEEECCSSEEEEECCC--------S
T ss_pred             cccc----ccc--ccccccccccccCccC----------eecccCChHHhCCCCCCEEECcCCcccccCCC--------c
Confidence            3322    111  22223333  333333          222 45555666666666666666655 4443        2


Q ss_pred             CCCCCcCEEeeecCCCCc
Q 044605          331 RNLTSLERLELSRCPILK  348 (405)
Q Consensus       331 ~~l~~L~~L~l~~c~~l~  348 (405)
                      .++++|+.+++++|+.+.
T Consensus       288 ~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEE
T ss_pred             ccCCCCCHHHhCCCcccc
Confidence            445555566666555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=1e-13  Score=125.86  Aligned_cols=217  Identities=18%  Similarity=0.181  Sum_probs=150.1

Q ss_pred             CCCCCCccEEEEEeeCCCCC-CcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605          119 LKPHYGLKELKVQNYGGTKF-PAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA  197 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  197 (405)
                      +..+++|+.|++.++....+ |..+.  .+++|+.|++++|. ++.+|. ...+.++.|.+.++. +..+..     ...
T Consensus        51 f~~l~~L~~L~l~~n~~~~i~~~~f~--~l~~L~~L~l~~n~-l~~l~~-~~~~~l~~L~~~~n~-l~~l~~-----~~~  120 (305)
T d1xkua_          51 FKNLKNLHTLILINNKISKISPGAFA--PLVKLERLYLSKNQ-LKELPE-KMPKTLQELRVHENE-ITKVRK-----SVF  120 (305)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSC-CSBCCS-SCCTTCCEEECCSSC-CCBBCH-----HHH
T ss_pred             hhccccccccccccccccccchhhhh--CCCccCEecccCCc-cCcCcc-chhhhhhhhhccccc-hhhhhh-----hhh
Confidence            34567788888888776666 44455  78999999999887 777764 345678888877643 333432     001


Q ss_pred             CCCCcccEEeeccCcccc-ccCC---CCCCcccEEEEeccCCccccCCCCCCcceEEEcCcCCccccccccccCCCCCCC
Q 044605          198 KGFPCLRELSIINCSKLK-GRLP---QHFSSLERIVIMSCEQLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSN  273 (405)
Q Consensus       198 ~~~~~L~~L~l~~~~~l~-~~l~---~~~~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~  273 (405)
                      .....+..+.+....... ...+   ..+++|+.+.+.++....-....+++|+.|++.++....     .....+..++
T Consensus       121 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~-----~~~~~~~~~~  195 (305)
T d1xkua_         121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK-----VDAASLKGLN  195 (305)
T ss_dssp             TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE-----ECTGGGTTCT
T ss_pred             hccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCC-----CChhHhhccc
Confidence            124566667665543222 1112   256788889888765321112236899999999987663     3445677777


Q ss_pred             CC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCccc
Q 044605          274 PG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSF  350 (405)
Q Consensus       274 ~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l  350 (405)
                      .+  +.++++          .+..+ +..+.++++|++|++++|.++.+|.+       +.++++|++|++++| +++.+
T Consensus       196 ~l~~L~~s~n----------~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~-------l~~l~~L~~L~Ls~N-~i~~i  257 (305)
T d1xkua_         196 NLAKLGLSFN----------SISAVDNGSLANTPHLRELHLNNNKLVKVPGG-------LADHKYIQVVYLHNN-NISAI  257 (305)
T ss_dssp             TCCEEECCSS----------CCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-------TTTCSSCCEEECCSS-CCCCC
T ss_pred             cccccccccc----------cccccccccccccccceeeecccccccccccc-------cccccCCCEEECCCC-ccCcc
Confidence            77  778777          44555 44677899999999999999999876       678999999999996 57877


Q ss_pred             CCC--------CCcCCccEEeecCCc
Q 044605          351 PEN--------GLLPSVVYLSIYLCP  368 (405)
Q Consensus       351 ~~~--------~~~~~L~~L~i~~c~  368 (405)
                      +..        ...++|+.|++.++|
T Consensus       258 ~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         258 GSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ChhhccCcchhcccCCCCEEECCCCc
Confidence            543        234689999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.54  E-value=6.1e-15  Score=134.59  Aligned_cols=214  Identities=16%  Similarity=0.136  Sum_probs=110.6

Q ss_pred             CccEEEEEeeCCC---CCCcccCCCCCCCccEEEEEcCCCCC-cCCC-CCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605          124 GLKELKVQNYGGT---KFPAWLGQSSFENLVVLRFRNCNQCT-SLPS-VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK  198 (405)
Q Consensus       124 ~L~~L~l~~~~~~---~lp~~~~~~~l~~L~~L~l~~~~~~~-~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  198 (405)
                      ++..|++.++...   .+|..++  .+++|+.|+++++..+. .+|. ++++++|++|+++++. +..+..     ....
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~--~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~-----~~~~  122 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIP-----DFLS  122 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECC-----GGGG
T ss_pred             EEEEEECCCCCCCCCCCCChHHh--cCccccccccccccccccccccccccccccchhhhcccc-cccccc-----cccc
Confidence            5677777775432   4666666  77788888887643333 5654 7777888888877654 333322     0122


Q ss_pred             CCCcccEEeeccCccccccCCC---CCCcccEEEEeccC---CccccCCCCCCc-ceEEEcCcCCccccccccccCCCCC
Q 044605          199 GFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMSCE---QLLVSCTTLPLL-CELEIDGFGEVAWINRPVEAGIFDS  271 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~---~l~~~l~~l~~L-~~L~l~~~~~l~~~~~~~~~~~~~~  271 (405)
                      .+++|+.+++.++.... .+|.   .++.|+.++++++.   .+|..+..++.+ +.+.++++....     .....+..
T Consensus       123 ~~~~L~~l~l~~N~~~~-~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~-----~~~~~~~~  196 (313)
T d1ogqa_         123 QIKTLVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-----KIPPTFAN  196 (313)
T ss_dssp             GCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-----ECCGGGGG
T ss_pred             chhhhcccccccccccc-cCchhhccCcccceeeccccccccccccccccccccccccccccccccc-----cccccccc
Confidence            36677777777653332 4443   56667777776654   235555555554 666666554332     12223333


Q ss_pred             CCCC-eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCccc
Q 044605          272 SNPG-PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSF  350 (405)
Q Consensus       272 l~~L-l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l  350 (405)
                      +... ++++.+...         ..+|..+..+++++.+++.++.+...+..       +..+++|+.|++++|.....+
T Consensus       197 l~~~~l~l~~~~~~---------~~~~~~~~~~~~l~~l~~~~~~l~~~~~~-------~~~~~~L~~L~Ls~N~l~g~i  260 (313)
T d1ogqa_         197 LNLAFVDLSRNMLE---------GDASVLFGSDKNTQKIHLAKNSLAFDLGK-------VGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             CCCSEEECCSSEEE---------ECCGGGCCTTSCCSEEECCSSEECCBGGG-------CCCCTTCCEEECCSSCCEECC
T ss_pred             cccccccccccccc---------ccccccccccccccccccccccccccccc-------cccccccccccCccCeecccC
Confidence            3333 444433211         23344444555555555554444322221       234445555555554333344


Q ss_pred             CCC-CCcCCccEEeecCC
Q 044605          351 PEN-GLLPSVVYLSIYLC  367 (405)
Q Consensus       351 ~~~-~~~~~L~~L~i~~c  367 (405)
                      |.. ..+++|++|+++++
T Consensus       261 P~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         261 PQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CGGGGGCTTCCEEECCSS
T ss_pred             ChHHhCCCCCCEEECcCC
Confidence            443 33345555555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1e-13  Score=123.32  Aligned_cols=182  Identities=18%  Similarity=0.218  Sum_probs=97.8

Q ss_pred             EEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccE
Q 044605          128 LKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRE  205 (405)
Q Consensus       128 L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~  205 (405)
                      .+-.+.....+|..+.    +++++|++++|. ++.+|.  +..+++|++|++.++ .+..++.+       ..+++|++
T Consensus        15 v~C~~~~L~~iP~~lp----~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~-------~~l~~L~~   81 (266)
T d1p9ag_          15 VNCDKRNLTALPPDLP----KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-------GTLPVLGT   81 (266)
T ss_dssp             EECTTSCCSSCCSCCC----TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-------SCCTTCCE
T ss_pred             EEccCCCCCeeCcCcC----cCCCEEECcCCc-CCCcCHHHhhccccccccccccc-cccccccc-------cccccccc
Confidence            3333344455665432    567888887776 666653  677888888888775 45555542       23777788


Q ss_pred             EeeccCccccccCC---CCCCcccEEEEeccCCc---cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeec
Q 044605          206 LSIINCSKLKGRLP---QHFSSLERIVIMSCEQL---LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKS  279 (405)
Q Consensus       206 L~l~~~~~l~~~l~---~~~~~L~~L~l~~c~~l---~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~  279 (405)
                      |+++++ .++. .+   ..+++|+.|+++++...   +..+..+++++.|.+.+|...     .++...+          
T Consensus        82 L~Ls~N-~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-----~l~~~~~----------  144 (266)
T d1p9ag_          82 LDLSHN-QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-----TLPPGLL----------  144 (266)
T ss_dssp             EECCSS-CCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-----CCCTTTT----------
T ss_pred             cccccc-cccc-cccccccccccccccccccccceeeccccccccccccccccccccc-----eeccccc----------
Confidence            877775 3432 22   14555666666554311   223334555555555554322     2233333          


Q ss_pred             CCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC-CCcCC
Q 044605          280 RTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN-GLLPS  358 (405)
Q Consensus       280 ~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~  358 (405)
                                           ..+++|+.+++++|+++.++...|      ..+++|++|++++| .++.+|.+ ...++
T Consensus       145 ---------------------~~l~~l~~l~l~~N~l~~~~~~~~------~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~  196 (266)
T d1p9ag_         145 ---------------------TPTPKLEKLSLANNNLTELPAGLL------NGLENLDTLLLQEN-SLYTIPKGFFGSHL  196 (266)
T ss_dssp             ---------------------TTCTTCCEEECTTSCCSCCCTTTT------TTCTTCCEEECCSS-CCCCCCTTTTTTCC
T ss_pred             ---------------------cccccchhcccccccccccCcccc------ccccccceeecccC-CCcccChhHCCCCC
Confidence                                 345555555555555555554432      44555555555554 34555544 22345


Q ss_pred             ccEEeecCC
Q 044605          359 VVYLSIYLC  367 (405)
Q Consensus       359 L~~L~i~~c  367 (405)
                      |+.|+++|.
T Consensus       197 L~~L~L~~N  205 (266)
T d1p9ag_         197 LPFAFLHGN  205 (266)
T ss_dssp             CSEEECCSC
T ss_pred             CCEEEecCC
Confidence            555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.8e-13  Score=118.34  Aligned_cols=189  Identities=19%  Similarity=0.169  Sum_probs=126.9

Q ss_pred             CCccEEEEEcCCCCCcCCC-CCCCCCccEEeecCCCCCeeeCC--CCCCCCCCCCCCcccEEeeccCccccccCCC--CC
Q 044605          148 ENLVVLRFRNCNQCTSLPS-VGHLPLLKNLVIKGMGRMAKAGT--TGGDQQAAKGFPCLRELSIINCSKLKGRLPQ--HF  222 (405)
Q Consensus       148 ~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~--~~  222 (405)
                      ..+.+++.+++. ++.+|. +.  +++++|+++++ .+..++.  +.       .+++|++|+++++ .++ .++.  .+
T Consensus        10 ~~~~~v~C~~~~-L~~iP~~lp--~~l~~L~Ls~N-~i~~l~~~~f~-------~l~~L~~L~L~~N-~l~-~l~~~~~l   76 (266)
T d1p9ag_          10 ASHLEVNCDKRN-LTALPPDLP--KDTTILHLSEN-LLYTFSLATLM-------PYTRLTQLNLDRA-ELT-KLQVDGTL   76 (266)
T ss_dssp             TTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGT-------TCTTCCEEECTTS-CCC-EEECCSCC
T ss_pred             CCCeEEEccCCC-CCeeCcCcC--cCCCEEECcCC-cCCCcCHHHhh-------ccccccccccccc-ccc-cccccccc
Confidence            444555555544 677774 42  57899999886 4556643  33       3888999999886 455 2332  56


Q ss_pred             CcccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCccccccc
Q 044605          223 SSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGL  300 (405)
Q Consensus       223 ~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~  300 (405)
                      ++|+.|+++++.  ..+..+..+++|+.|+++++....                                    ..+..+
T Consensus        77 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~------------------------------------~~~~~~  120 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS------------------------------------LPLGAL  120 (266)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC------------------------------------CCSSTT
T ss_pred             ccccccccccccccccccccccccccccccccccccce------------------------------------eecccc
Confidence            677777776653  224455556666776666653221                                    112245


Q ss_pred             CCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCcchHHHhhcCc
Q 044605          301 HKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCPDLEEKCKKDE  378 (405)
Q Consensus       301 ~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~~~~~~~~  378 (405)
                      ..+++++.|++++|.++.++...+      ..++.|+.+++++| .++.++..  ..+++|++|+++++. ++. .    
T Consensus       121 ~~l~~l~~L~l~~n~l~~l~~~~~------~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~-l----  187 (266)
T d1p9ag_         121 RGLGELQELYLKGNELKTLPPGLL------TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYT-I----  187 (266)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTT------TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCC-C----
T ss_pred             ccccccccccccccccceeccccc------cccccchhcccccc-cccccCccccccccccceeecccCC-Ccc-c----
Confidence            688899999999999999987754      67889999999996 56677654  556899999999983 432 1    


Q ss_pred             ccccccccccCeeEecceEe
Q 044605          379 REYCHLVADIPFVQLNHKLV  398 (405)
Q Consensus       379 ~~~~~~i~~i~~~~~~~~~~  398 (405)
                      .+++.....++.+.+.+|.+
T Consensus       188 p~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCB
T ss_pred             ChhHCCCCCCCEEEecCCCC
Confidence            23445567788888887644

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.3e-13  Score=118.45  Aligned_cols=202  Identities=16%  Similarity=0.170  Sum_probs=140.0

Q ss_pred             eCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeecc
Q 044605          133 YGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIIN  210 (405)
Q Consensus       133 ~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  210 (405)
                      .....+|..+    .+++++|++++|. ++.+|.  +..+++|++|+++++. +..+..     .....++.++.+.+..
T Consensus        21 ~~L~~iP~~i----p~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~-----~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          21 QGLQAVPVGI----PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNV-LARIDA-----AAFTGLALLEQLDLSD   89 (284)
T ss_dssp             SCCSSCCTTC----CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECT-----TTTTTCTTCCEEECCS
T ss_pred             CCCCccCCCC----CCCCCEEECcCCc-CCCCCHHHhhcccccccccccccc-cccccc-----cccccccccccccccc
Confidence            3345566533    3568889998876 777764  7788889999887654 444443     1122367777877766


Q ss_pred             CccccccCCC---CCCcccEEEEeccCC--c-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCC
Q 044605          211 CSKLKGRLPQ---HFSSLERIVIMSCEQ--L-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTE  282 (405)
Q Consensus       211 ~~~l~~~l~~---~~~~L~~L~l~~c~~--l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~  282 (405)
                      ...+...-+.   .+++|+.|++.++..  + +..+...++|+.+++.++...     .++.+.|..++.|  ++++++ 
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-----~i~~~~f~~~~~L~~L~l~~N-  163 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-----ALPDDTFRDLGNLTHLFLHGN-  163 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSS-
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-----ccChhHhccccchhhcccccC-
Confidence            6666532222   567888888887653  2 334556788899999887654     5666677777777  777777 


Q ss_pred             CccEEecCCCCcccc-cccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCc
Q 044605          283 VLPWEIGSPDQESLP-EGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSV  359 (405)
Q Consensus       283 ~l~l~i~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L  359 (405)
                               +++.+| .++.++++|+.+++++|+++.++...|      .++++|++|++++|. +..++..  ...++|
T Consensus       164 ---------~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f------~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L  227 (284)
T d1ozna_         164 ---------RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF------RDLGRLMTLYLFANN-LSALPTEALAPLRAL  227 (284)
T ss_dssp             ---------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT------TTCTTCCEEECCSSC-CSCCCHHHHTTCTTC
T ss_pred             ---------cccccchhhhccccccchhhhhhccccccChhHh------hhhhhcccccccccc-ccccccccccccccc
Confidence                     445554 466789999999999988888765554      778899999999865 4555433  456789


Q ss_pred             cEEeecCC
Q 044605          360 VYLSIYLC  367 (405)
Q Consensus       360 ~~L~i~~c  367 (405)
                      ++|++++.
T Consensus       228 ~~L~l~~N  235 (284)
T d1ozna_         228 QYLRLNDN  235 (284)
T ss_dssp             CEEECCSS
T ss_pred             CEEEecCC
Confidence            99999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=2.5e-13  Score=117.79  Aligned_cols=184  Identities=16%  Similarity=0.212  Sum_probs=109.3

Q ss_pred             CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc
Q 044605          123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC  202 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  202 (405)
                      .+|+.|.+.++....++ ++.  .+++|+.|++++|. +..++++..+++|+.+.+.++. +..++.       ...+++
T Consensus        41 ~~L~~L~l~~~~i~~l~-~l~--~l~~L~~L~ls~n~-i~~~~~l~~l~~l~~l~~~~n~-~~~i~~-------l~~l~~  108 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-GVQ--YLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNP-LKNVSA-------IAGLQS  108 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-TGG--GCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCC-CSCCGG-------GTTCTT
T ss_pred             CCcCEEECCCCCCCcch-hHh--cCCCCcEeecCCce-eecccccccccccccccccccc-cccccc-------cccccc
Confidence            45666666666655553 343  56777777777665 5555556677777777766543 233322       123666


Q ss_pred             ccEEeeccCccccccCC-CCCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecC
Q 044605          203 LRELSIINCSKLKGRLP-QHFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSR  280 (405)
Q Consensus       203 L~~L~l~~~~~l~~~l~-~~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~  280 (405)
                      |+.+.++++.... ..+ ...+.++.+.+.++... ...+..+++|+.|.+.+|..                        
T Consensus       109 L~~l~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~------------------------  163 (227)
T d1h6ua2         109 IKTLDLTSTQITD-VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV------------------------  163 (227)
T ss_dssp             CCEEECTTSCCCC-CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC------------------------
T ss_pred             ccccccccccccc-cchhccccchhhhhchhhhhchhhhhcccccccccccccccc------------------------
Confidence            6666666553221 111 13455555555444321 12334455555555555422                        


Q ss_pred             CCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCcc
Q 044605          281 TEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVV  360 (405)
Q Consensus       281 ~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~  360 (405)
                                   ...+ .+.++++|++|++++|++++++.        +.++++|++|++++| .+++++....+++|+
T Consensus       164 -------------~~~~-~l~~l~~L~~L~Ls~n~l~~l~~--------l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~  220 (227)
T d1h6ua2         164 -------------SDLT-PLANLSKLTTLKADDNKISDISP--------LASLPNLIEVHLKNN-QISDVSPLANTSNLF  220 (227)
T ss_dssp             -------------CCCG-GGTTCTTCCEEECCSSCCCCCGG--------GGGCTTCCEEECTTS-CCCBCGGGTTCTTCC
T ss_pred             -------------ccch-hhcccccceecccCCCccCCChh--------hcCCCCCCEEECcCC-cCCCCcccccCCCCC
Confidence                         1121 36678888888888888877753        467888888888887 577776555566888


Q ss_pred             EEeecC
Q 044605          361 YLSIYL  366 (405)
Q Consensus       361 ~L~i~~  366 (405)
                      +|++++
T Consensus       221 ~L~lsn  226 (227)
T d1h6ua2         221 IVTLTN  226 (227)
T ss_dssp             EEEEEE
T ss_pred             EEEeeC
Confidence            888763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.45  E-value=6.7e-12  Score=115.32  Aligned_cols=72  Identities=22%  Similarity=0.303  Sum_probs=53.3

Q ss_pred             CCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeecCCcchHHHhhcCccc
Q 044605          301 HKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIYLCPDLEEKCKKDERE  380 (405)
Q Consensus       301 ~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~  380 (405)
                      ..+++|++|++++|+++.+|.          .+++|+.|++++| .++++|.  .+++|++|++++|+ +++ .+     
T Consensus       281 ~~~~~L~~L~Ls~N~l~~lp~----------~~~~L~~L~L~~N-~L~~l~~--~~~~L~~L~L~~N~-L~~-lp-----  340 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLIELPA----------LPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNP-LRE-FP-----  340 (353)
T ss_dssp             CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSS-CC-----
T ss_pred             ccCCCCCEEECCCCccCcccc----------ccCCCCEEECCCC-cCCcccc--ccCCCCEEECcCCc-CCC-CC-----
Confidence            356899999999999998874          3578999999886 5788884  56789999999986 532 11     


Q ss_pred             ccccccccCeeEec
Q 044605          381 YCHLVADIPFVQLN  394 (405)
Q Consensus       381 ~~~~i~~i~~~~~~  394 (405)
                        .....+++++++
T Consensus       341 --~~~~~L~~L~~~  352 (353)
T d1jl5a_         341 --DIPESVEDLRMN  352 (353)
T ss_dssp             --CCCTTCCEEECC
T ss_pred             --ccccccCeeECc
Confidence              123456777665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.44  E-value=5.7e-12  Score=115.81  Aligned_cols=134  Identities=20%  Similarity=0.119  Sum_probs=71.0

Q ss_pred             eeEEEEEccCCCCccCccccCCCccCcccCceeeCCCCCCCcccccc-cccCCCceEEcccccCCChhhhhhcccccccC
Q 044605           26 VIYLILVGDLTESKEMPLRIGKLTSLRTLTKFAVGKSNCSGLSELRS-STLLHEKLTILGLENVNVAEDAKEGNRTTSSD  104 (405)
Q Consensus        26 ~~L~~L~L~~~~i~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~-L~~L~~~L~l~~l~~~~~~~~~~~~~l~~l~~  104 (405)
                      .++++|||+++.++.+|..+   .+|++|++..   .   .+.++.. +.+|+ .|.+.+..- ..              
T Consensus        38 ~~l~~LdLs~~~L~~lp~~~---~~L~~L~Ls~---N---~l~~lp~~~~~L~-~L~l~~n~l-~~--------------   92 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPELP---PHLESLVASC---N---SLTELPELPQSLK-SLLVDNNNL-KA--------------   92 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSCC---TTCSEEECCS---S---CCSSCCCCCTTCC-EEECCSSCC-SC--------------
T ss_pred             cCCCEEEeCCCCCCCCCCCC---CCCCEEECCC---C---CCcccccchhhhh-hhhhhhccc-ch--------------
Confidence            46889999999999999754   5677776421   1   1222211 22344 554443211 00              


Q ss_pred             ChhhHHHHHHHhccCCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCC
Q 044605          105 SREVAEIQTRVLEMLKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRM  184 (405)
Q Consensus       105 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l  184 (405)
                                 +..+  +..|++|++.++....+|. ..  .+++|+.|+++++. ....+.  ..+.+..+.+..+...
T Consensus        93 -----------l~~l--p~~L~~L~L~~n~l~~lp~-~~--~l~~L~~L~l~~~~-~~~~~~--~~~~l~~l~~~~~~~~  153 (353)
T d1jl5a_          93 -----------LSDL--PPLLEYLGVSNNQLEKLPE-LQ--NSSFLKIIDVDNNS-LKKLPD--LPPSLEFIAAGNNQLE  153 (353)
T ss_dssp             -----------CCSC--CTTCCEEECCSSCCSSCCC-CT--TCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCS
T ss_pred             -----------hhhh--ccccccccccccccccccc-hh--hhccceeecccccc-cccccc--ccccccchhhcccccc
Confidence                       0011  2457788887777666665 23  57788888887766 333332  2344555555433221


Q ss_pred             eeeCCCCCCCCCCCCCCcccEEeeccC
Q 044605          185 AKAGTTGGDQQAAKGFPCLRELSIINC  211 (405)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~L~~L~l~~~  211 (405)
                      .. .       ....++.++.+++.++
T Consensus       154 ~~-~-------~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         154 EL-P-------ELQNLPFLTAIYADNN  172 (353)
T ss_dssp             SC-C-------CCTTCTTCCEEECCSS
T ss_pred             cc-c-------cccccccceecccccc
Confidence            11 1       1223566667766553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.7e-12  Score=116.31  Aligned_cols=194  Identities=16%  Similarity=0.229  Sum_probs=148.4

Q ss_pred             CCccEEEEEeeCCCCCCcc-cCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCC
Q 044605          123 YGLKELKVQNYGGTKFPAW-LGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKG  199 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~~-~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  199 (405)
                      +.+++|+++++....+|.. +.  .+++|++|+++++. +..++.  ...++.++.+.+.....+..++.     .....
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~-----~~~~~  103 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDP-----ATFHG  103 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCT-----TTTTT
T ss_pred             CCCCEEECcCCcCCCCCHHHhh--cccccccccccccc-ccccccccccccccccccccccccccccccc-----hhhcc
Confidence            5689999999888777754 44  68999999999887 565553  56688899988877777777654     11224


Q ss_pred             CCcccEEeeccCccccccCC---CCCCcccEEEEeccC--Cc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCC
Q 044605          200 FPCLRELSIINCSKLKGRLP---QHFSSLERIVIMSCE--QL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSN  273 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~l~---~~~~~L~~L~l~~c~--~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~  273 (405)
                      +++|++|++.++.. ....+   ..+++|+.+++.++.  .+ +..|..+++|+.|++++|...     .++...|.+++
T Consensus       104 l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-----~l~~~~f~~l~  177 (284)
T d1ozna_         104 LGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-----SVPERAFRGLH  177 (284)
T ss_dssp             CTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----EECTTTTTTCT
T ss_pred             cccCCEEecCCccc-ccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-----ccchhhhcccc
Confidence            89999999988643 32222   257889999998754  33 345777899999999998643     67778889999


Q ss_pred             CC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          274 PG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       274 ~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                      +|  +.++++.          ++.+ |..+.++++|++|++++|.++.++...|      .++++|++|++++|+.
T Consensus       178 ~L~~l~l~~N~----------l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~------~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         178 SLDRLLLHQNR----------VAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL------APLRALQYLRLNDNPW  237 (284)
T ss_dssp             TCCEEECCSSC----------CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH------TTCTTCCEEECCSSCE
T ss_pred             ccchhhhhhcc----------ccccChhHhhhhhhccccccccccccccccccc------ccccccCEEEecCCCC
Confidence            99  8888773          3444 6788999999999999999998886654      7889999999999764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-11  Score=108.30  Aligned_cols=211  Identities=16%  Similarity=0.176  Sum_probs=126.3

Q ss_pred             cEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcc
Q 044605          126 KELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCL  203 (405)
Q Consensus       126 ~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L  203 (405)
                      +.++..+.....+|..+    +++++.|+++++. ++.+|.  +..+++|++|++.++.....++.     .....++++
T Consensus        11 ~~i~c~~~~l~~iP~~l----~~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~-----~~f~~l~~l   80 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL----PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-----DVFSNLPKL   80 (242)
T ss_dssp             SEEEEESCSCSSCCSCS----CSCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECS-----SSEESCTTC
T ss_pred             CEEEEeCCCCCCcCCCC----CCCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeec-----ccccccccc
Confidence            34444554555666543    3578888888876 677764  67788888888888766555543     112236788


Q ss_pred             cEEeeccCccccccCCC---CCCcccEEEEeccCCc-cccCCCCCCcceEEE--cCcCCccccccccccCCCCCCCC-C-
Q 044605          204 RELSIINCSKLKGRLPQ---HFSSLERIVIMSCEQL-LVSCTTLPLLCELEI--DGFGEVAWINRPVEAGIFDSSNP-G-  275 (405)
Q Consensus       204 ~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l--~~~~~l~~~~~~~~~~~~~~l~~-L-  275 (405)
                      +++.+..+..+....+.   .+++|+.+++.++.-. ...+..+++++.+..  .++..+.    .++...|..+.. + 
T Consensus        81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~----~i~~~~~~~~~~~l~  156 (242)
T d1xwdc1          81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH----TIERNSFVGLSFESV  156 (242)
T ss_dssp             CEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC----EECTTSSTTSBSSCE
T ss_pred             ccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccc----cccccccccccccce
Confidence            88887776666533332   5788888888876421 122333444444432  2222333    445555554432 2 


Q ss_pred             -eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeC-CcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC
Q 044605          276 -PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVG-SYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN  353 (405)
Q Consensus       276 -l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~-~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~  353 (405)
                       +.++++          +++.++......++++.+...+ ++++.+|.+.|      .++++|++|++++|+ ++.+|..
T Consensus       157 ~L~l~~n----------~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f------~~l~~L~~L~Ls~N~-l~~l~~~  219 (242)
T d1xwdc1         157 ILWLNKN----------GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVF------HGASGPVILDISRTR-IHSLPSY  219 (242)
T ss_dssp             EEECCSS----------CCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTT------TTSCCCSEEECTTSC-CCCCCSS
T ss_pred             eeecccc----------cccccccccccchhhhccccccccccccccHHHh------cCCCCCCEEECCCCc-CCccCHH
Confidence             444433          5566766666667776665444 78888887654      778899999998864 6777764


Q ss_pred             C--CcCCccEEeecCC
Q 044605          354 G--LLPSVVYLSIYLC  367 (405)
Q Consensus       354 ~--~~~~L~~L~i~~c  367 (405)
                      .  .++.|+++++.++
T Consensus       220 ~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         220 GLENLKKLRARSTYNL  235 (242)
T ss_dssp             SCTTCCEEESSSEESS
T ss_pred             HHcCCcccccCcCCCC
Confidence            2  2234444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=1.3e-12  Score=110.69  Aligned_cols=157  Identities=15%  Similarity=0.231  Sum_probs=76.3

Q ss_pred             CCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCC--CCCCc
Q 044605          147 FENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLP--QHFSS  224 (405)
Q Consensus       147 l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~--~~~~~  224 (405)
                      +.+++.|+++++. +++++++..+++|++|+++++ .+..++.       ...+++|++|+++++.. . .++  ..+++
T Consensus        39 l~~l~~L~l~~~~-i~~l~~l~~l~nL~~L~Ls~N-~l~~~~~-------l~~l~~L~~L~l~~n~~-~-~~~~l~~l~~  107 (199)
T d2omxa2          39 LDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNN-QLTDITP-------LKNLTKLVDILMNNNQI-A-DITPLANLTN  107 (199)
T ss_dssp             HTTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSSCC-C-CCGGGTTCTT
T ss_pred             hcCCCEEECCCCC-CCCccccccCCCcCcCccccc-cccCccc-------ccCCccccccccccccc-c-cccccccccc
Confidence            3455555555554 444545555555555555554 2333322       12255555555554321 1 121  13445


Q ss_pred             ccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeecCCCCccEEecCCCCcccccccCCC
Q 044605          225 LERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKL  303 (405)
Q Consensus       225 L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l  303 (405)
                      |+.+++++|... ...+..+++|+.|++++|..                                     ..++ .+..+
T Consensus       108 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l-------------------------------------~~~~-~l~~~  149 (199)
T d2omxa2         108 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI-------------------------------------SDIS-ALSGL  149 (199)
T ss_dssp             CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC-------------------------------------CCCG-GGTTC
T ss_pred             cccccccccccccccccchhhhhHHhhhhhhhh-------------------------------------cccc-ccccc
Confidence            555555444322 23344556666666655421                                     1121 34456


Q ss_pred             CCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccE
Q 044605          304 SHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVY  361 (405)
Q Consensus       304 ~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~  361 (405)
                      ++|+.|++.+|++++++.        +.++++|++|++++| .+++++....+++|++
T Consensus       150 ~~L~~L~l~~n~l~~l~~--------l~~l~~L~~L~ls~N-~i~~i~~l~~L~~L~~  198 (199)
T d2omxa2         150 TSLQQLNFSSNQVTDLKP--------LANLTTLERLDISSN-KVSDISVLAKLTNLES  198 (199)
T ss_dssp             TTCSEEECCSSCCCCCGG--------GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSE
T ss_pred             ccccccccccccccCCcc--------ccCCCCCCEEECCCC-CCCCCccccCCCCCCc
Confidence            666666666666665542        355666666666665 3555543233344444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=1.5e-12  Score=111.38  Aligned_cols=55  Identities=18%  Similarity=0.303  Sum_probs=27.2

Q ss_pred             CCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCCCcCCccEEeec
Q 044605          302 KLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENGLLPSVVYLSIY  365 (405)
Q Consensus       302 ~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~  365 (405)
                      .+++|+.+++++|.+++++.        +.++++|++|++++| .+++++....+++|++|+++
T Consensus       154 ~l~~L~~l~l~~n~l~~i~~--------l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         154 RLTKLDTLSLEDNQISDIVP--------LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--------GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEE
T ss_pred             cccccccccccccccccccc--------ccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEEcc
Confidence            44555555555555544432        244555555555554 34444433333455555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=3.8e-12  Score=108.71  Aligned_cols=161  Identities=15%  Similarity=0.202  Sum_probs=98.7

Q ss_pred             CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCc
Q 044605          123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPC  202 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  202 (405)
                      ..|+.|++.++....++. +.  .+++|++|++++|. ++.+++++.+++|++|++.++ .+..++.       ...+++
T Consensus        46 ~~L~~L~l~~~~i~~l~~-l~--~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n-~i~~l~~-------l~~l~~  113 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG-IQ--YLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDEN-KVKDLSS-------LKDLKK  113 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT-GG--GCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCGGG-------GTTCTT
T ss_pred             cCccEEECcCCCCCCchh-Hh--hCCCCCEEeCCCcc-ccCccccccCccccccccccc-ccccccc-------cccccc
Confidence            356666666665554442 33  57777777777765 666666677777777777665 3444433       223667


Q ss_pred             ccEEeeccCccccccCC--CCCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeec
Q 044605          203 LRELSIINCSKLKGRLP--QHFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKS  279 (405)
Q Consensus       203 L~~L~l~~~~~l~~~l~--~~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~  279 (405)
                      |+.|++.++.. . .++  ..+++++.+++.++.-. +..+..+++|+.+++++|+                        
T Consensus       114 L~~L~l~~~~~-~-~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~------------------------  167 (210)
T d1h6ta2         114 LKSLSLEHNGI-S-DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ------------------------  167 (210)
T ss_dssp             CCEEECTTSCC-C-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC------------------------
T ss_pred             ccccccccccc-c-cccccccccccccccccccccccccccccccccccccccccc------------------------
Confidence            77777766532 2 122  14555666655544311 2233345555555555542                        


Q ss_pred             CCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeec
Q 044605          280 RTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSR  343 (405)
Q Consensus       280 ~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~  343 (405)
                                   ++.++ .+.++++|+.|++++|++++++.        +.++++|++|++++
T Consensus       168 -------------l~~i~-~l~~l~~L~~L~Ls~N~i~~l~~--------l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         168 -------------ISDIV-PLAGLTKLQNLYLSKNHISDLRA--------LAGLKNLDVLELFS  209 (210)
T ss_dssp             -------------CCCCG-GGTTCTTCCEEECCSSCCCBCGG--------GTTCTTCSEEEEEE
T ss_pred             -------------ccccc-cccCCCCCCEEECCCCCCCCChh--------hcCCCCCCEEEccC
Confidence                         22333 36789999999999999988863        57889999999975

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=6.8e-12  Score=106.19  Aligned_cols=159  Identities=19%  Similarity=0.274  Sum_probs=119.2

Q ss_pred             CCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFP  201 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  201 (405)
                      +.+++.|++.++...+++. +.  .+++|+.|++++|. ++.+++++.+++|++|++.++. ...++.       ...++
T Consensus        39 l~~l~~L~l~~~~i~~l~~-l~--~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~-~~~~~~-------l~~l~  106 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDG-VE--YLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ-IADITP-------LANLT  106 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTT-GG--GCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGG-------GTTCT
T ss_pred             hcCCCEEECCCCCCCCccc-cc--cCCCcCcCcccccc-ccCcccccCCcccccccccccc-cccccc-------ccccc
Confidence            4678899988887766643 44  68999999999986 7888889999999999998764 344433       23489


Q ss_pred             cccEEeeccCccccccCC-CCCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCeeec
Q 044605          202 CLRELSIINCSKLKGRLP-QHFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGPEKS  279 (405)
Q Consensus       202 ~L~~L~l~~~~~l~~~l~-~~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll~l~  279 (405)
                      +|+.|+++++.... ..+ ..+++|+.++++++.-- ...+..+++|+.|++.+|+..                      
T Consensus       107 ~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~----------------------  163 (199)
T d2omxa2         107 NLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVT----------------------  163 (199)
T ss_dssp             TCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC----------------------
T ss_pred             cccccccccccccc-ccccchhhhhHHhhhhhhhhccccccccccccccccccccccc----------------------
Confidence            99999998875433 222 36899999999987421 345778899999999887332                      


Q ss_pred             CCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEE
Q 044605          280 RTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERL  339 (405)
Q Consensus       280 ~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L  339 (405)
                                     .++ .+.++++|+.|++++|++++++.        +.++++|++|
T Consensus       164 ---------------~l~-~l~~l~~L~~L~ls~N~i~~i~~--------l~~L~~L~~L  199 (199)
T d2omxa2         164 ---------------DLK-PLANLTTLERLDISSNKVSDISV--------LAKLTNLESL  199 (199)
T ss_dssp             ---------------CCG-GGTTCTTCCEEECCSSCCCCCGG--------GGGCTTCSEE
T ss_pred             ---------------CCc-cccCCCCCCEEECCCCCCCCCcc--------ccCCCCCCcC
Confidence                           222 36788999999999998888753        4677788765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=2.4e-11  Score=104.98  Aligned_cols=166  Identities=14%  Similarity=0.193  Sum_probs=123.7

Q ss_pred             CCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605          119 LKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK  198 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  198 (405)
                      +..+++|+.|++.++....++. +.  .+++++.+++++|. ++.++++..+++|+.+.+.++.... +..       ..
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~~-l~--~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~l~l~~~~~~~-~~~-------~~  126 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLAP-LK--NLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQITD-VTP-------LA  126 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GT--TCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSCCCC-CGG-------GT
T ss_pred             HhcCCCCcEeecCCceeecccc-cc--cccccccccccccc-ccccccccccccccccccccccccc-cch-------hc
Confidence            4558899999999987666543 44  78999999999886 7788889999999999998765332 222       22


Q ss_pred             CCCcccEEeeccCccccccCC-CCCCcccEEEEeccCCc-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCCe
Q 044605          199 GFPCLRELSIINCSKLKGRLP-QHFSSLERIVIMSCEQL-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPGP  276 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~~l~-~~~~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~Ll  276 (405)
                      ..+.++.+.+.++.... ..+ ..+++|+.|.+.+|... ...+..+++|+.|++++|. +.                  
T Consensus       127 ~~~~~~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~-l~------------------  186 (227)
T d1h6ua2         127 GLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-IS------------------  186 (227)
T ss_dssp             TCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CC------------------
T ss_pred             cccchhhhhchhhhhch-hhhhccccccccccccccccccchhhcccccceecccCCCc-cC------------------
Confidence            36788899887764322 222 36889999999887532 3457889999999999873 22                  


Q ss_pred             eecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeec
Q 044605          277 EKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSR  343 (405)
Q Consensus       277 ~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~  343 (405)
                                        .++ .+.++++|+.|++++|++++++.        ++++++|+.|++++
T Consensus       187 ------------------~l~-~l~~l~~L~~L~Ls~N~lt~i~~--------l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         187 ------------------DIS-PLASLPNLIEVHLKNNQISDVSP--------LANTSNLFIVTLTN  226 (227)
T ss_dssp             ------------------CCG-GGGGCTTCCEEECTTSCCCBCGG--------GTTCTTCCEEEEEE
T ss_pred             ------------------CCh-hhcCCCCCCEEECcCCcCCCCcc--------cccCCCCCEEEeeC
Confidence                              222 25678899999999988888763        57889999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=6.3e-11  Score=103.12  Aligned_cols=197  Identities=21%  Similarity=0.220  Sum_probs=132.3

Q ss_pred             CCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCC--CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCC
Q 044605          123 YGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPS--VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGF  200 (405)
Q Consensus       123 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  200 (405)
                      +++++|++.++....+|.+.. ..+++|+.|++++|.....++.  +..++.++++.+..+..+..++.     .....+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f-~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~-----~~~~~l  102 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-----EAFQNL  102 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTT-TTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT-----TSEECC
T ss_pred             CCCCEEECcCCcCCccChhHh-hccchhhhhhhccccccceeecccccccccccccccccccccccccc-----cccccc
Confidence            579999999988877776532 2689999999999985555543  66789999999988777777654     112348


Q ss_pred             CcccEEeeccCccccccCCC--CCCcccEEEEecc--CCc----cccCCCC-CCcceEEEcCcCCccccccccccCCCCC
Q 044605          201 PCLRELSIINCSKLKGRLPQ--HFSSLERIVIMSC--EQL----LVSCTTL-PLLCELEIDGFGEVAWINRPVEAGIFDS  271 (405)
Q Consensus       201 ~~L~~L~l~~~~~l~~~l~~--~~~~L~~L~l~~c--~~l----~~~l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~  271 (405)
                      ++|+++++.++ .++. .+.  .+.+++.+.....  ..+    +..+..+ ..++.|++.++...     .++...+. 
T Consensus       103 ~~L~~l~l~~~-~l~~-~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-----~i~~~~~~-  174 (242)
T d1xwdc1         103 PNLQYLLISNT-GIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-----EIHNCAFN-  174 (242)
T ss_dssp             TTCCEEEEESC-CCCS-CCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-----EECTTTTT-
T ss_pred             ccccccccchh-hhcc-cccccccccccccccccccccccccccccccccccccceeeeccccccc-----cccccccc-
Confidence            99999999886 4442 332  4555666654332  222    2344444 37888998876544     34443333 


Q ss_pred             CCCC--eeecCCCCccEEecCCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCc
Q 044605          272 SNPG--PEKSRTEVLPWEIGSPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILK  348 (405)
Q Consensus       272 l~~L--l~l~~~~~l~l~i~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~  348 (405)
                      ...+  +...         ++++++.+|. .+.++++|+.|++++|+++.+|..+|      .+++.|+.+++.+   ++
T Consensus       175 ~~~l~~~~~l---------~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~------~~l~~L~~l~~~~---l~  236 (242)
T d1xwdc1         175 GTQLDELNLS---------DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL------ENLKKLRARSTYN---LK  236 (242)
T ss_dssp             TCCEEEEECT---------TCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSC------TTCCEEESSSEES---SS
T ss_pred             chhhhccccc---------cccccccccHHHhcCCCCCCEEECCCCcCCccCHHHH------cCCcccccCcCCC---CC
Confidence            2333  2211         3346678876 47899999999999999999987654      5666666666543   55


Q ss_pred             ccC
Q 044605          349 SFP  351 (405)
Q Consensus       349 ~l~  351 (405)
                      .+|
T Consensus       237 ~lp  239 (242)
T d1xwdc1         237 KLP  239 (242)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.4e-13  Score=121.02  Aligned_cols=130  Identities=12%  Similarity=0.179  Sum_probs=75.9

Q ss_pred             CCCccEEEEEeeCCC--CCCcccCCCCCCCccEEEEEcCCCCCc--CCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCC
Q 044605          122 HYGLKELKVQNYGGT--KFPAWLGQSSFENLVVLRFRNCNQCTS--LPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAA  197 (405)
Q Consensus       122 ~~~L~~L~l~~~~~~--~lp~~~~~~~l~~L~~L~l~~~~~~~~--l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  197 (405)
                      ..+|++|++.++...  .++..+.  .+++|++|++++|. +.+  +..++++++|++|++++|..+...+.    ....
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~--~c~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l----~~l~  117 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL----QTLL  117 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHH----HHHH
T ss_pred             CCCCCEEECCCCccCHHHHHHHHH--hCCCcccccccccC-CCcHHHHHHhcCCCCcCcccccccccccccc----chhh
Confidence            456777777665422  1222222  57788888887775 332  23466778888888887766543211    0011


Q ss_pred             CCCCcccEEeeccCcccccc-----CCCCCCcccEEEEeccCC-c-----cccCCCCCCcceEEEcCcCCcc
Q 044605          198 KGFPCLRELSIINCSKLKGR-----LPQHFSSLERIVIMSCEQ-L-----LVSCTTLPLLCELEIDGFGEVA  258 (405)
Q Consensus       198 ~~~~~L~~L~l~~~~~l~~~-----l~~~~~~L~~L~l~~c~~-l-----~~~l~~l~~L~~L~l~~~~~l~  258 (405)
                      ..+++|++|++++|..+++.     +....++|+.|++++|.. +     ...+..+|+|++|++++|..++
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it  189 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK  189 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred             HHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCC
Confidence            23678888888887665431     111356788888877642 2     2223446778888887775543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.1e-12  Score=117.53  Aligned_cols=101  Identities=18%  Similarity=0.250  Sum_probs=68.5

Q ss_pred             CCCCccEEEEEcCCCCC--cCCC-CCCCCCccEEeecCCCCCeeeCC-CCCCCCCCCCCCcccEEeeccCcccccc----
Q 044605          146 SFENLVVLRFRNCNQCT--SLPS-VGHLPLLKNLVIKGMGRMAKAGT-TGGDQQAAKGFPCLRELSIINCSKLKGR----  217 (405)
Q Consensus       146 ~l~~L~~L~l~~~~~~~--~l~~-l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~----  217 (405)
                      ...+|++|++++|. +.  .++. +.++++|++|.+.+|..-..... ++       .+++|++|++++|..+++.    
T Consensus        44 ~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~-------~~~~L~~L~Ls~c~~itd~~l~~  115 (284)
T d2astb2          44 SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-------KNSNLVRLNLSGCSGFSEFALQT  115 (284)
T ss_dssp             CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-------TCTTCSEEECTTCBSCCHHHHHH
T ss_pred             cCCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh-------cCCCCcCccccccccccccccch
Confidence            45689999998876 32  2333 56789999999998853222222 22       3789999999998877641    


Q ss_pred             CCCCCCcccEEEEeccCCcc-----ccCCC-CCCcceEEEcCc
Q 044605          218 LPQHFSSLERIVIMSCEQLL-----VSCTT-LPLLCELEIDGF  254 (405)
Q Consensus       218 l~~~~~~L~~L~l~~c~~l~-----~~l~~-l~~L~~L~l~~~  254 (405)
                      +...+++|++|++++|..+.     ..+.. .++|+.|+++++
T Consensus       116 l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             hhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence            22367899999999987651     12222 578888888876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.86  E-value=5.2e-09  Score=87.39  Aligned_cols=109  Identities=16%  Similarity=0.244  Sum_probs=62.9

Q ss_pred             cCCCCC-CcccEEEEeccCC---c-cccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEec
Q 044605          217 RLPQHF-SSLERIVIMSCEQ---L-LVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIG  289 (405)
Q Consensus       217 ~l~~~~-~~L~~L~l~~c~~---l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~  289 (405)
                      .+|..+ +++++|+++++.-   + +..|..+++|+.|+++++...     .++.+.+..+..|  ++++++        
T Consensus        22 ~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-----~~~~~~~~~~~~L~~L~Ls~N--------   88 (192)
T d1w8aa_          22 EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-----GIEPNAFEGASHIQELQLGEN--------   88 (192)
T ss_dssp             SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-----CBCTTTTTTCTTCCEEECCSC--------
T ss_pred             ccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-----cccccccccccccceeeeccc--------
Confidence            344432 3466666655431   1 234455667777777666544     3444455555555  555554        


Q ss_pred             CCCCccccc-ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          290 SPDQESLPE-GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       290 ~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                        +++.+|. .+.++++|+.|++++|+++.++...|      .++++|++|++++|+.
T Consensus        89 --~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f------~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          89 --KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF------EHLNSLTSLNLASNPF  138 (192)
T ss_dssp             --CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS------TTCTTCCEEECTTCCB
T ss_pred             --cccccCHHHHhCCCcccccccCCccccccCHHHh------cCCccccccccccccc
Confidence              3345543 45677777777777777777766654      5666777777776553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.82  E-value=1.1e-08  Score=85.44  Aligned_cols=110  Identities=16%  Similarity=0.149  Sum_probs=89.0

Q ss_pred             ccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCccc-ccccCCCCCccEEEEe
Q 044605          236 LLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESL-PEGLHKLSHITRISIV  312 (405)
Q Consensus       236 l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~l-p~~~~~l~~L~~L~l~  312 (405)
                      +|..++  +++++|++++|+...    .++...|..+++|  |+++++.          +..+ +..+..+++|+.|+++
T Consensus        23 iP~~lp--~~l~~L~Ls~N~i~~----~~~~~~f~~l~~L~~L~L~~N~----------i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          23 IPRDIP--LHTTELLLNDNELGR----ISSDGLFGRLPHLVKLELKRNQ----------LTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             CCSCCC--TTCSEEECCSCCCCS----BCCSCSGGGCTTCCEEECCSSC----------CCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCCCC--CCCCEEEeCCCCCcc----cccccccCCCceEeeeeccccc----------cccccccccccccccceeeec
Confidence            455543  689999999998765    5667788888888  8888873          3444 4577899999999999


Q ss_pred             CCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC--CCcCCccEEeecCCc
Q 044605          313 GSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN--GLLPSVVYLSIYLCP  368 (405)
Q Consensus       313 ~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  368 (405)
                      +|+++.++...|      .++++|++|++++| .++.++.+  ...++|++|++.+.+
T Consensus        87 ~N~l~~l~~~~F------~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          87 ENKIKEISNKMF------LGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SCCCCEECSSSS------TTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cccccccCHHHH------hCCCcccccccCCc-cccccCHHHhcCCcccccccccccc
Confidence            999999998776      78999999999996 57888765  456799999999865

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=9.2e-09  Score=83.28  Aligned_cols=122  Identities=19%  Similarity=0.240  Sum_probs=84.4

Q ss_pred             CCCCCCccEEEEEeeCCCCCCcccCCCCCCCccEEEEEcCCCCCcCCCCCCCCCccEEeecCCCCCeeeCCCCCCCCCCC
Q 044605          119 LKPHYGLKELKVQNYGGTKFPAWLGQSSFENLVVLRFRNCNQCTSLPSVGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAK  198 (405)
Q Consensus       119 l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  198 (405)
                      +..+.+++.|++.++....++....  .+++|+.|++++|. +..++++..+++|++|+++++. +..++.     ....
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~--~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~-i~~l~~-----~~~~   84 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGE-----GLDQ   84 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGG--GTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECS-----CHHH
T ss_pred             ccCcCcCcEEECCCCCCCccCcccc--ccccCCEEECCCCC-CCccCCcccCcchhhhhccccc-ccCCCc-----cccc
Confidence            3456678889999988887876544  67889999999886 7788888889999999998875 555543     0112


Q ss_pred             CCCcccEEeeccCccccccCC-----CCCCcccEEEEeccCC--cc----ccCCCCCCcceEEE
Q 044605          199 GFPCLRELSIINCSKLKGRLP-----QHFSSLERIVIMSCEQ--LL----VSCTTLPLLCELEI  251 (405)
Q Consensus       199 ~~~~L~~L~l~~~~~l~~~l~-----~~~~~L~~L~l~~c~~--l~----~~l~~l~~L~~L~l  251 (405)
                      .+++|++|++.++. +.+ ++     ..+++|+.+++.+|+-  .+    ..+..+|+|+.|+-
T Consensus        85 ~l~~L~~L~L~~N~-i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          85 ALPDLTELILTNNS-LVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             HCTTCCEEECCSCC-CCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccccccceecccc-ccc-cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            37888999888853 331 11     2567888888877642  22    13455777777763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=3.8e-08  Score=75.72  Aligned_cols=41  Identities=12%  Similarity=0.089  Sum_probs=21.7

Q ss_pred             cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCC
Q 044605          300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCP  345 (405)
Q Consensus       300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~  345 (405)
                      +..+++|+.|++++|++++++.-..     +..+++|++|++++|+
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~~~~~~-----l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQSAAIQP-----LVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGG-----GGGCTTCCEEECTTSG
T ss_pred             cccccccCeEECCCCccCCCCCchh-----hcCCCCCCEEECCCCc
Confidence            4455666666666666555543111     3455566666665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=6.8e-08  Score=74.24  Aligned_cols=68  Identities=22%  Similarity=0.212  Sum_probs=55.7

Q ss_pred             CCcccccccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCC---CCcCCccEEeecCCc
Q 044605          292 DQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPEN---GLLPSVVYLSIYLCP  368 (405)
Q Consensus       292 ~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~  368 (405)
                      .++.+|..+..+++|+.|++++|.++++|.        +..+++|++|++++| .++.++..   ..+++|++|++++.+
T Consensus        31 ~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~--------~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          31 RLRALPPALAALRCLEVLQASDNALENVDG--------VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCCCCCGGGGGCTTCCEEECCSSCCCCCGG--------GTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ccCcchhhhhhhhcccccccccccccccCc--------cccccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCCCc
Confidence            556788888899999999999999998863        478999999999996 56666642   445799999999865

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=5e-08  Score=78.82  Aligned_cols=35  Identities=6%  Similarity=-0.039  Sum_probs=20.2

Q ss_pred             CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcC
Q 044605          221 HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFG  255 (405)
Q Consensus       221 ~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~  255 (405)
                      ...++++|+++++.  .++..+..+++|+.|++++|.
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~   52 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE   52 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCC
Confidence            34556677776653  333333446667777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.6e-07  Score=73.93  Aligned_cols=61  Identities=25%  Similarity=0.146  Sum_probs=30.2

Q ss_pred             cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCCCcccCCCC-CcCCccEEeecCC
Q 044605          300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPILKSFPENG-LLPSVVYLSIYLC  367 (405)
Q Consensus       300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~i~~c  367 (405)
                      +.++++|+.|++++|+++.|+...|      .++++|++|++++| .++.+|... ...+|+.|++++.
T Consensus        52 f~~l~~L~~L~Ls~N~l~~i~~~~f------~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          52 LRGLGELRNLTIVKSGLRFVAPDAF------HFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             SCSCCCCSEEECCSSCCCEECTTGG------GSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSS
T ss_pred             hccccccCcceeeccccCCcccccc------cccccccceeccCC-CCcccChhhhccccccccccCCC
Confidence            4455555555555555555544433      44555555555553 344454431 1124555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3e-06  Score=67.52  Aligned_cols=101  Identities=16%  Similarity=0.093  Sum_probs=81.2

Q ss_pred             ccEEEEeccC--CccccCCCCCCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccc-cc
Q 044605          225 LERIVIMSCE--QLLVSCTTLPLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLP-EG  299 (405)
Q Consensus       225 L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp-~~  299 (405)
                      .+.++..+..  ..|..++.+++|++|.+.+++.+.    .++.+.|.++++|  ++++++          +++.++ .+
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~----~i~~~~f~~l~~L~~L~Ls~N----------~l~~i~~~~   75 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKS----------GLRFVAPDA   75 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC----EECGGGSCSCCCCSEEECCSS----------CCCEECTTG
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCcccc----ccCchhhccccccCcceeecc----------ccCCccccc
Confidence            3445444422  347788889999999999888787    8888899999999  999888          567775 46


Q ss_pred             cCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          300 LHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       300 ~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                      +..+++|+.|++++|+++.+|...|       ...+|+.|++++|+.
T Consensus        76 f~~l~~L~~L~Ls~N~l~~l~~~~~-------~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALESLSWKTV-------QGLSLQELVLSGNPL  115 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTT-------CSCCCCEEECCSSCC
T ss_pred             ccccccccceeccCCCCcccChhhh-------ccccccccccCCCcc
Confidence            8899999999999999999998754       334799999999864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.94  E-value=8.9e-09  Score=86.34  Aligned_cols=34  Identities=9%  Similarity=0.095  Sum_probs=22.0

Q ss_pred             CCCcccEEEEeccC--CccccCCCCCCcceEEEcCcC
Q 044605          221 HFSSLERIVIMSCE--QLLVSCTTLPLLCELEIDGFG  255 (405)
Q Consensus       221 ~~~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~  255 (405)
                      .+++|++|+++++.  .+ +.+..+++|+.|++++|.
T Consensus        46 ~L~~L~~L~Ls~n~I~~i-~~l~~l~~L~~L~Ls~N~   81 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNL   81 (198)
T ss_dssp             HTTTCCEEECSEEEESCC-CCHHHHTTCCEEECCEEE
T ss_pred             cccccceeECcccCCCCc-ccccCCccccChhhcccc
Confidence            46677778777653  23 345557777777777763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.88  E-value=1e-07  Score=79.72  Aligned_cols=56  Identities=23%  Similarity=0.287  Sum_probs=28.9

Q ss_pred             CCCCCCccEEeecCCCCCeeeCCCCCCCCCCCCCCcccEEeeccCccccccCCC---CCCcccEEEEec
Q 044605          167 VGHLPLLKNLVIKGMGRMAKAGTTGGDQQAAKGFPCLRELSIINCSKLKGRLPQ---HFSSLERIVIMS  232 (405)
Q Consensus       167 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~l~~---~~~~L~~L~l~~  232 (405)
                      +..+++|++|+++++. +..++.       ...+++|++|+++++ .++ .++.   .+++|+.|++++
T Consensus        44 l~~L~~L~~L~Ls~n~-I~~i~~-------l~~l~~L~~L~Ls~N-~i~-~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          44 LSTLKACKHLALSTNN-IEKISS-------LSGMENLRILSLGRN-LIK-KIENLDAVADTLEELWISY  102 (198)
T ss_dssp             HHHTTTCCEEECSEEE-ESCCCC-------HHHHTTCCEEECCEE-EEC-SCSSHHHHHHHCCEEECSE
T ss_pred             HhcccccceeECcccC-CCCccc-------ccCCccccChhhccc-ccc-ccccccccccccccccccc
Confidence            5556777777776542 333322       223666777777664 344 2332   233455555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.6e-07  Score=88.35  Aligned_cols=34  Identities=9%  Similarity=-0.127  Sum_probs=24.3

Q ss_pred             eeEEEEEccCCCCccC--ccccCCCccCcccCceee
Q 044605           26 VIYLILVGDLTESKEM--PLRIGKLTSLRTLTKFAV   59 (405)
Q Consensus        26 ~~L~~L~L~~~~i~~l--P~~i~~L~~L~~L~~~~~   59 (405)
                      .+|+.||+++++++..  ..-+..++++++|++..+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~   37 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC   37 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC
Confidence            4789999999988752  344667788888875444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.43  E-value=1.3e-06  Score=79.20  Aligned_cols=19  Identities=11%  Similarity=0.284  Sum_probs=10.6

Q ss_pred             ccCCCCCccEEEEeCCccc
Q 044605          299 GLHKLSHITRISIVGSYLV  317 (405)
Q Consensus       299 ~~~~l~~L~~L~l~~~~l~  317 (405)
                      .+...++|++|++++|.++
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCC
T ss_pred             cccccccchhhhhhcCccC
Confidence            3445566666666655544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.93  E-value=5.1e-05  Score=68.32  Aligned_cols=97  Identities=14%  Similarity=0.192  Sum_probs=60.1

Q ss_pred             ccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeecCCCCccc-----CCC---CCcCCccEEeecCCcc
Q 044605          299 GLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSRCPILKSF-----PEN---GLLPSVVYLSIYLCPD  369 (405)
Q Consensus       299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~c~~l~~l-----~~~---~~~~~L~~L~i~~c~~  369 (405)
                      .+...++|+.|++++|.++.--   ...+.. +..++.|++|++++|. +++.     ...   ...+.|++|+++++. 
T Consensus       210 ~l~~~~~L~~L~Ls~N~i~~~g---~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-  284 (344)
T d2ca6a1         210 GLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-  284 (344)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-
T ss_pred             hhcchhhhcccccccccccccc---cccccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-
Confidence            4567899999999998765310   011110 5678999999999986 3332     111   112479999999985 


Q ss_pred             hHHHhhcCc-ccccccccccCeeEecceEeeC
Q 044605          370 LEEKCKKDE-REYCHLVADIPFVQLNHKLVFD  400 (405)
Q Consensus       370 l~~~~~~~~-~~~~~~i~~i~~~~~~~~~~~~  400 (405)
                      +.......- ..-+.+.+.++.+.+.+++|.+
T Consensus       285 i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         285 IELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            432111101 1112345678999999988865

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.00038  Score=55.19  Aligned_cols=42  Identities=19%  Similarity=0.147  Sum_probs=23.8

Q ss_pred             ccCCCCCccEEEEeCCcccccccCCCCCcccCCCCCCcCEEeeecCCC
Q 044605          299 GLHKLSHITRISIVGSYLVSFPKGGLESLSFVRNLTSLERLELSRCPI  346 (405)
Q Consensus       299 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~l~~l~~L~~L~l~~c~~  346 (405)
                      .+..+++|+.|++++|.++++++-.+     + +...|++|++++|+.
T Consensus        86 ~~~~l~~L~~L~Ls~N~i~~l~~l~~-----l-~~~~L~~L~L~~Npl  127 (162)
T d1koha1          86 IVQKAPNLKILNLSGNELKSERELDK-----I-KGLKLEELWLDGNSL  127 (162)
T ss_dssp             HHHHSTTCCCCCCTTSCCCCGGGHHH-----H-TTCCCSSCCCTTSTT
T ss_pred             HHhhCCcccccccccCccccchhhhh-----h-hccccceeecCCCCc
Confidence            34456667777777766666654221     2 223566666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.0015  Score=60.16  Aligned_cols=112  Identities=11%  Similarity=0.058  Sum_probs=66.2

Q ss_pred             CCcceEEEcCcCCccccccccccCCCCCCCCC--eeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCccccccc
Q 044605          244 PLLCELEIDGFGEVAWINRPVEAGIFDSSNPG--PEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPK  321 (405)
Q Consensus       244 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--l~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~  321 (405)
                      ++|+.|+++.++..+    .--...++.++++  +.+++|..-.     .++..+...+...++|+.|++++|.+++..-
T Consensus         2 ~~l~~ld~~~~~i~~----~~~~~l~~~l~~l~~L~L~~~~i~~-----~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~   72 (460)
T d1z7xw1           2 LDIQSLDIQCEELSD----ARWAELLPLLQQCQVVRLDDCGLTE-----ARCKDISSALRVNPALAELNLRSNELGDVGV   72 (460)
T ss_dssp             EEEEEEEEESCCCCH----HHHHHHHHHHTTCSEEEEESSCCCH-----HHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred             CCCCEEEeeCCcCCh----HHHHHHHHhCCCCCEEEeCCCCCCH-----HHHHHHHHHHhcCCCCCEEECcCCcCChHHH
Confidence            367888887775432    1112234555666  7788873110     0111234456788999999999988764210


Q ss_pred             CCCCCccc-C-CCCCCcCEEeeecCCCCccc-----CCC-CCcCCccEEeecCCc
Q 044605          322 GGLESLSF-V-RNLTSLERLELSRCPILKSF-----PEN-GLLPSVVYLSIYLCP  368 (405)
Q Consensus       322 ~~~~~l~~-l-~~l~~L~~L~l~~c~~l~~l-----~~~-~~~~~L~~L~i~~c~  368 (405)
                      .   .+.+ + ....+|++|++++|. +++.     +.. ...++|++|+++++.
T Consensus        73 ~---~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          73 H---CVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             H---HHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             H---HHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence            0   0100 1 223579999999985 5543     222 345689999999985

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.41  E-value=0.00091  Score=53.14  Aligned_cols=14  Identities=7%  Similarity=-0.040  Sum_probs=6.9

Q ss_pred             CCCCCcCEEeeecC
Q 044605          331 RNLTSLERLELSRC  344 (405)
Q Consensus       331 ~~l~~L~~L~l~~c  344 (405)
                      ...++|++|+++++
T Consensus        97 ~~n~sL~~L~l~~n  110 (167)
T d1pgva_          97 LVTQSIVEFKADNQ  110 (167)
T ss_dssp             TTTCCCSEEECCCC
T ss_pred             HhCCcCCEEECCCC
Confidence            34445555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.20  E-value=0.004  Score=48.91  Aligned_cols=63  Identities=17%  Similarity=0.066  Sum_probs=48.0

Q ss_pred             cCCCCCccEEEEeCCcccccccC-CCCCcccCCCCCCcCEEeeecCCCCcccCCC---CCcCCccEEeecCCcc
Q 044605          300 LHKLSHITRISIVGSYLVSFPKG-GLESLSFVRNLTSLERLELSRCPILKSFPEN---GLLPSVVYLSIYLCPD  369 (405)
Q Consensus       300 ~~~l~~L~~L~l~~~~l~~l~~~-~~~~l~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~~  369 (405)
                      ...+++|+.|++++|+++.++.- ..     +..+++|+.|++++| .+++++..   .. ..|+.|++.+.|-
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~-----~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~-~~L~~L~L~~Npl  127 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSI-----VQKAPNLKILNLSGN-ELKSERELDKIKG-LKLEELWLDGNSL  127 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTH-----HHHSTTCCCCCCTTS-CCCCGGGHHHHTT-CCCSSCCCTTSTT
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHH-----HhhCCcccccccccC-ccccchhhhhhhc-cccceeecCCCCc
Confidence            35789999999999999987431 11     356899999999995 57777653   33 3789999999863

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.49  E-value=0.029  Score=43.89  Aligned_cols=112  Identities=14%  Similarity=0.083  Sum_probs=59.4

Q ss_pred             CCcccEEeeccCcccccc----CC---CCCCcccEEEEeccCCc-------cccCCCCCCcceEEEcCcCCccccccccc
Q 044605          200 FPCLRELSIINCSKLKGR----LP---QHFSSLERIVIMSCEQL-------LVSCTTLPLLCELEIDGFGEVAWINRPVE  265 (405)
Q Consensus       200 ~~~L~~L~l~~~~~l~~~----l~---~~~~~L~~L~l~~c~~l-------~~~l~~l~~L~~L~l~~~~~l~~~~~~~~  265 (405)
                      .|+|++|+++++..+...    +.   ...++|++|++++|.--       ...+...+.|++|++++|....       
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~-------   86 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP-------   86 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH-------
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch-------
Confidence            577888888765443320    00   14566777777765421       2233335677777777663221       


Q ss_pred             cCCCCCCCCCeeecCCCCccEEecCCCCcccccccCCCCCccEEEEeCCcccccccCCCCCccc-CCCCCCcCEEeeec
Q 044605          266 AGIFDSSNPGPEKSRTEVLPWEIGSPDQESLPEGLHKLSHITRISIVGSYLVSFPKGGLESLSF-VRNLTSLERLELSR  343 (405)
Q Consensus       266 ~~~~~~l~~Ll~l~~~~~l~l~i~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~l~~~~~~~l~~-l~~l~~L~~L~l~~  343 (405)
                       .+.                        ..+-.++..-++|++|+++++....+...+...+.. +..-++|++|++++
T Consensus        87 -~g~------------------------~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          87 -ELL------------------------ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             -HHH------------------------HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             -HHH------------------------HHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence             000                        122335667788999999876555443221111111 33446677776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=82.44  E-value=0.045  Score=42.64  Aligned_cols=12  Identities=17%  Similarity=0.141  Sum_probs=5.0

Q ss_pred             CCCcceEEEcCc
Q 044605          243 LPLLCELEIDGF  254 (405)
Q Consensus       243 l~~L~~L~l~~~  254 (405)
                      .+.|++|++++|
T Consensus        45 n~~L~~L~Ls~n   56 (166)
T d1io0a_          45 NTYVKKFSIVGT   56 (166)
T ss_dssp             CCSCCEEECTTS
T ss_pred             CCccCeeeccCC
Confidence            344444444443