Citrus Sinensis ID: 044652

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550---
MENEFFLNAGIPAPVAMPIWPSAAMEIQIQATNEMMNCSSEQSSDCFFNPNNWEKSTDHSLQFDSALSSIVSSPAASNSNISNESSVIRELIGKLGNIGNNSGAGEITPHSLAPYINNNSNNNNGSSSTNASCYTTPLNSPPKLNLPMSLGNSMPLNSSVAEFSADPGFAERAARFSRFGSRSFNGRSTGQFVPNHNPDQFGLSRSNNNPNPMTANEKLPRVSSSPSLKVLGSQAQATGNKSPQDRSELANSQEESSVSEQVPNDFNSRKRKAVSKGKGKETAASPSVNNTTKVAEANASESSKNKRCKPNEGKANGNGAVKAEDEGDDKQAKANNAKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLELNVDALMSKDIYQPNKPLPHSIFQIDSSASAFFSHQPQQNPALHGNISNGTMTQCPVDPLDNALCRNLSMQLPQLEQFTETIPQFQNFGEDDLQSIVQMGFGQNPNSETSLQSQSFHGSNQAPHMKAEL
cccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccc
ccccHEEcccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHEEcccccccccccccccccccccccccccEEEc
MENEFflnagipapvampiwpsAAMEIQIQATNEmmncsseqssdcffnpnnwekstdhslqfdsalssivsspaasnsnisnESSVIRELIGKLgnignnsgageitphslapyinnnsnnnngssstnascyttplnsppklnlpmslgnsmplnssvaefsadpgfAERAARFsrfgsrsfngrstgqfvpnhnpdqfglsrsnnnpnpmtaneklprvssspslkvlgsqaqatgnkspqdrselansqeessvseqvpndfnsrkrkavskgkgketaaspsvnnttkvaeanasessknkrckpnegkangngavkaedegddkqakannakppeppkdyihvrarrgqatdshsLAERVRREKISERMKLLQDLvpgcnkvtgkaLMLDEIINYVQSLQRQVEFLSMKLASVNTRLELNVDAlmskdiyqpnkplphsifqidssasaffshqpqqnpalhgnisngtmtqcpvdpldnalcrnlsmqlpqleqFTETIpqfqnfgeddLQSIVQmgfgqnpnsetslqsqsfhgsnqaphmkael
MENEFFLNAGIPAPVAMPIWPSAAMEIQIQATNEMMNCSSEQSSDCFFNPNNWEKSTDHSLQFDSALSSIVSspaasnsnisneSSVIRELIGKLGNIGNNSGAGEITPHSLAPYINNNSNNNNGSSSTNASCYTTPLNSPPKLNLPMSLGNSMPLNSSVAEFSADPGFAERAARFSRFGSRSFNGRSTGQFVPNHNPDQFGLSRSNNNPNPMTANEKLPRVSSSPSLKVLGSQaqatgnkspqdRSELAnsqeessvseqvpndfnsrkrkavskgkgketaaspsvnnttkvaeanasessknkrckpnegkangngavkaedegddkqakannakppeppkdyIHVRarrgqatdshslaervrREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLELNVDALMSKDIYQPNKPLPHSIFQIDSSASAFFSHQPQQNPALHGNISNGTMTQCPVDPLDNALCRNLSMQLPQLEQFTETIPQFQNFGEDDLQSIVQMGFGQNPNSETSLqsqsfhgsnqaphmkael
MENEFFLNAGIPAPVAMPIWPSAAMEIQIQATNEMMNCSSEQSSDCFFNPNNWEKSTDHSLQFDsalssivsspaasnsnisnessviRELIGKLGNIGNNSGAGEITPHSLAPYInnnsnnnngssstnasCYTTPLNSPPKLNLPMSLGNSMPLNSSVAEFSADPgfaeraarfsrfgsrsfngrstgQFVPNHNPDQFGLSRSNNNPNPMTANEKLPRVSSSPSLKVLGSQAQATGNKSPQDRSELANsqeessvseqvPNDFNSRKRKAVSKGKGKETAASPSVNNTTKVAEANASESSKNKRCKPNEGKANGNGAVKAEDEGddkqakannakppeppkdYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLELNVDALMSKDIYQPNKPLPHSIFQIDSSASAFFSHQPQQNPALHGNISNGTMTQCPVDPLDNALCRNLSMQLPQLEQFTETIPQFQNFGEDDLQSIVQMGFGQNPNSETSLQSQSFHGSNQAPHMKAEL
****FFLNAGIPAPVAMPIWPSAAMEIQIQA**********************************************************ELIGKLGN**************************************************************************************************************************************************************************************************************************************************************************************KLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLELNVDALMSKDIYQP*****HSIFQI***************************TQCPVDPLDNALCRNLSMQLPQLEQFTETIPQFQNFG****************************************
***EFFLNAGIP********************************DCFFNPNNWE**********************************************************************************************************************A******************************************************************************************************************************************************************************************************SERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLS*****************************************************************************************************DDLQSIV**************************HMKA*L
MENEFFLNAGIPAPVAMPIWPSAAMEIQIQATNEMMNCSSEQSSDCFFNPNNWEKSTDHSLQFDSALSSI*************ESSVIRELIGKLGNIGNNSGAGEITPHSLAPYINNNSNNNNGSSSTNASCYTTPLNSPPKLNLPMSLGNSMPLNSSVAEFSADPGFAERAARFSRFGSRSFNGRSTGQFVPNHNPDQFGLSRSNNNPNPMTAN***************************************************************************************************************************PEPPKDYIHVRA************ERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLELNVDALMSKDIYQPNKPLPHSIFQIDSSASAFFSHQPQQNPALHGNISNGTMTQCPVDPLDNALCRNLSMQLPQLEQFTETIPQFQNFGEDDLQSIVQMGFGQN*************************
********A*IPAPVAMPIWP*AA***QIQAT**MMNCS***S*DCFFNP*NWEKSTDHSLQFDSALSSIVSSP*A**SNISNESSVIRELIGKLGNIGNNSGAGEITPHSLAPYINNNSNNNNGSSSTNASCYTTPLNSPPKLNLPMSLGNSMPLNSSVAEFSADPGFAERAARFSRFGSRSFNGRSTGQFVPNHNPDQFGLSRSN***************************************************************************************************************************************PKDYIHVRARRGQ*TDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLELNVDALMSKDIYQPNKPLPHSIFQIDSSASAFFSHQPQQNPALHGNISNGTMTQCPVDPLDNALCRNLSMQLPQLEQFTETIPQFQNFGEDDLQSIVQMGFG***************************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENEFFLNAGIPAPVAMPIWPSAAMEIQIQATNEMMNCSSEQSSDCFFNPNNWEKSTDHSLQFDSALSSIVSSPAASNSNISNESSVIRELIGKLGNIGNNSGAGEITPHSLAPYINNNSNNNNGSSSTNASCYTTPLNSPPKLNLPMSLGNSMPLNSSVAEFSADPGFAERAARFSRFGSRSFNGRSTGQFVPNHNPDQFGLSRSNNNPNPMTANEKLPRVSSSPSLKVLGSQAQATGNKSPQDRSELANSQEESSVSEQVPNDFNSRKRKAVSKGKGKETAASPSVNNTTKVAEANASESSKNKRCKPNEGKANGNGAVKAEDEGDDKQAKANNAKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYxxxxxxxxxxxxxxxxxxxxxLELNVDALMSKDIYQPNKPLPHSIFQIDSSASAFFSHQPQQNPALHGNISNGTMTQCPVDPLDNALCRNLSMQLPQLEQFTETIPQFQNFGEDDLQSIVQMGFGQNPNSETSLQSQSFHGSNQAPHMKAEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query553 2.2.26 [Sep-21-2011]
Q9SRT2456 Transcription factor bHLH yes no 0.810 0.982 0.465 1e-109
Q9FJL4498 Transcription factor bHLH no no 0.840 0.933 0.474 5e-94
Q9LK48371 Transcription factor bHLH no no 0.432 0.644 0.492 8e-60
Q9CAA9486 Transcription factor bHLH no no 0.607 0.691 0.375 9e-49
Q9C670390 Transcription factor bHLH no no 0.435 0.617 0.390 2e-44
Q0JXE7343 Transcription factor BPE no no 0.285 0.460 0.534 3e-41
Q6NKN9366 Transcription factor bHLH no no 0.273 0.412 0.477 2e-39
Q93W88286 Transcription factor bHLH no no 0.251 0.486 0.602 1e-38
Q9LV17281 Transcription factor bHLH no no 0.224 0.441 0.635 3e-38
Q8GY61335 Transcription factor bHLH no no 0.164 0.271 0.791 4e-38
>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1 Back     alignment and function desciption
 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 261/561 (46%), Positives = 317/561 (56%), Gaps = 113/561 (20%)

Query: 1   MENEFFLNAGIPAPVAMPIWPSAAMEIQIQATNEMMNCSSEQSSDCFFNPNNWEKSTDHS 60
           MENE F+NAG+  P  M   PS++  +    + E        S + F     WEKST+ S
Sbjct: 1   MENELFMNAGVSHPPVM-TSPSSSSAMLKWVSMETQPVDPSLSRNLF-----WEKSTEQS 54

Query: 61  LQFDSALSSIVSSPAASNSNIS-----NESSVIRELIGKLGNIGNNSGAGEITPHSLAPY 115
           + FDSALSS+VSSP  SNSN S      E+ ++RELIGKLGNIG+  G            
Sbjct: 55  I-FDSALSSLVSSPTPSNSNFSVGGVGGENVIMRELIGKLGNIGDIYGI----------- 102

Query: 116 INNNSNNNNGSSSTNASCYTTPLNSPPKLNLPMSLGNSMPLNSSVAEFSADPGFAERAAR 175
                     ++S   SCY TP++SPP  ++ M    + P+    AE S DPGFAERAAR
Sbjct: 103 ----------TASNGNSCYATPMSSPPPGSM-METKTTTPM----AELSGDPGFAERAAR 147

Query: 176 FSRFGSRSFNGRSTGQFVPNHNPDQFGLSRSNNNPNPMTANEKLPRVSSSPSLKVLGSQA 235
           FS FGSRSFN R+   F  N+ P             P+T NEK+PRVSSSP  K L S  
Sbjct: 148 FSCFGSRSFNSRTNSPFPINNEP-------------PITTNEKMPRVSSSPVFKPLASHV 194

Query: 236 QATGNKSPQDRSELANSQEESSVSEQVPNDFNSRKRKAVSKGKGKETAASPSVNNTTKVA 295
            A      +   EL                  SRKRK  SK        SPS  +++K  
Sbjct: 195 PAG-----ESSGEL------------------SRKRKTKSKQN------SPSAVSSSK-- 223

Query: 296 EANASESSKNKRCKPNEGKANGNGAVKAEDEGDDKQAKANNAKPPEPPKDYIHVRARRGQ 355
           E    E S  KRCK            K+E+ GD         K  +P KDYIHVRARRGQ
Sbjct: 224 EIEEKEDSDPKRCK------------KSEENGD-------KTKSIDPYKDYIHVRARRGQ 264

Query: 356 ATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMK 415
           ATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMK
Sbjct: 265 ATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMK 324

Query: 416 LASVNTRLELNVDALMSKDIYQPNKPLPH--SIFQIDSSASAFFSHQPQQNPALHGNISN 473
           L+SVNTRL+ N+DAL+SKDI+  +  L H   + Q+DSSA         +N  L+ +IS+
Sbjct: 325 LSSVNTRLDFNMDALLSKDIFPSSNNLMHHQQVLQLDSSAETLLGDHHNKNLQLNPDISS 384

Query: 474 GTMTQCPVDPLDNALCRNLSMQLPQLEQFTETIPQFQNFGEDDLQSIVQMGFGQNPNSET 533
             +    ++PL+ +  R+    LP L  FT++I Q+  F EDDL SI+ MGF QN     
Sbjct: 385 NNV----INPLETSETRSFISHLPTLAHFTDSISQYSTFSEDDLHSIIHMGFAQN----- 435

Query: 534 SLQSQSFHGSNQAP-HMKAEL 553
            LQ  +   SNQ P HMKAEL
Sbjct: 436 RLQELNQGSSNQVPSHMKAEL 456

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1 Back     alignment and function description
>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1 Back     alignment and function description
>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1 Back     alignment and function description
>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1 Back     alignment and function description
>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1 Back     alignment and function description
>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1 Back     alignment and function description
>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1 Back     alignment and function description
>sp|Q9LV17|BH079_ARATH Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1 Back     alignment and function description
>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query553
255587658554 transcription factor, putative [Ricinus 0.934 0.933 0.631 1e-173
224069890563 predicted protein [Populus trichocarpa] 0.936 0.920 0.598 1e-172
356527316586 PREDICTED: transcription factor bHLH62-l 0.954 0.901 0.586 1e-167
356566230585 PREDICTED: transcription factor bHLH62-l 0.960 0.907 0.59 1e-165
356558973548 PREDICTED: transcription factor bHLH62-l 0.918 0.927 0.584 1e-150
356503048582 PREDICTED: transcription factor bHLH62-l 0.969 0.920 0.552 1e-147
388499536493 unknown [Lotus japonicus] 0.858 0.963 0.530 1e-136
359477937569 PREDICTED: transcription factor bHLH62-l 0.927 0.901 0.492 1e-127
147786897569 hypothetical protein VITISV_005183 [Viti 0.925 0.899 0.493 1e-127
357513299498 BHLH transcription factor [Medicago trun 0.846 0.939 0.500 1e-126
>gi|255587658|ref|XP_002534345.1| transcription factor, putative [Ricinus communis] gi|223525454|gb|EEF28039.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 368/583 (63%), Positives = 409/583 (70%), Gaps = 66/583 (11%)

Query: 4   EFFLNAGIPAPVAMPIW-------------PSAAMEIQIQATNEMM--NCSSEQSSDCFF 48
           EFFLN GIP P  +P+               S+AM  Q    NE    N SS   SDCF+
Sbjct: 5   EFFLNTGIPPP-QLPLHFEQNSTWQQQQQSFSSAMATQ---ANEFKHNNSSSNHLSDCFY 60

Query: 49  NPNNWEKSTDHSLQFDSALSSIVSSPAASNSNISNESSVIRELIGKLGNIGNNSGAGEIT 108
           +PN WEKSTD SLQFDSALSS+VSSPAASNSNIS ES +IRELIGKLGN+G+    GEI+
Sbjct: 61  DPN-WEKSTDQSLQFDSALSSMVSSPAASNSNISTESFIIRELIGKLGNVGS---TGEIS 116

Query: 109 PHS----LAPYINNNSNNNNGSSSTNASCYTTPLNSPPKLNLPMS--LGNSMPLNSSVAE 162
           PHS     A Y N NS    G++STN SCYTTPL+SPPKLN+  +  L   + LNSSVAE
Sbjct: 117 PHSQPMLAASYNNKNSITGTGNNSTNTSCYTTPLSSPPKLNMSPTDQLSTPLALNSSVAE 176

Query: 163 FSADPGFAERAARFSRFGSRSFNGRSTGQFVPNHNPDQFGLSRSNNNPNPMTANEKLPRV 222
           F+ADPGFAERAARFS FGSRSFNGR++          QFGL++       M    KLPRV
Sbjct: 177 FTADPGFAERAARFSCFGSRSFNGRTS----------QFGLNKLEMQL--MGNANKLPRV 224

Query: 223 SSSPSLKVLGSQAQATGNK--SP--QDRSELANS--QEESSVSEQVP--NDFNSRKRKAV 274
           SS+PSLK +GS  Q  GNK  SP  QDRSELANS  QEESSVSEQ P   + NS+KRK  
Sbjct: 225 SSTPSLKAVGSHHQK-GNKNSSPLLQDRSELANSTSQEESSVSEQNPPNAELNSKKRKTA 283

Query: 275 SKGKGKETAASPSVNNTTKVAEANASESSKNKRCKPNEGKANGNGAVKAEDE----GDDK 330
            K K KE A  P   N+ K AE +  ++S  KR K NE        VKAE+E    GDDK
Sbjct: 284 PKAKSKE-APQP---NSAKDAEVD--DNSNAKRSKGNE-----KNDVKAEEEHKGNGDDK 332

Query: 331 QAKANNAKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTG 390
           Q KA+  KPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTG
Sbjct: 333 QNKAS-TKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTG 391

Query: 391 KALMLDEIINYVQSLQRQVEFLSMKLASVNTRLELNVDALMSKDIYQPNKPLPHSIFQID 450
           KALMLDEIINYVQSLQRQVEFLSMKLASVNTRL++N+D LMSKDI+Q    LPH IF ID
Sbjct: 392 KALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDINLDTLMSKDIFQTTNQLPHPIFPID 451

Query: 451 SSASAFFSHQPQQNPALHGNISNGTMTQCPVDPLDNALCRNLSMQLPQLEQFTETIPQFQ 510
           SSASA F HQPQQNPALH NISNG +T C VDPLD  L  NL+M LP LE F  T PQF 
Sbjct: 452 SSASAIFGHQPQQNPALHSNISNGALTHCSVDPLDTGLSHNLNMHLPPLEGFNHTPPQFP 511

Query: 511 NFGEDDLQSIVQMGFGQNPNSETSLQSQSFHGSNQAPHMKAEL 553
            F E+DLQSIVQMGF Q P  E  L  Q+ H SNQ  +MK E+
Sbjct: 512 TFCEEDLQSIVQMGFTQIPVPEALLPGQNIHSSNQVSYMKTEI 554

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224069890|ref|XP_002303073.1| predicted protein [Populus trichocarpa] gi|222844799|gb|EEE82346.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527316|ref|XP_003532257.1| PREDICTED: transcription factor bHLH62-like [Glycine max] Back     alignment and taxonomy information
>gi|356566230|ref|XP_003551337.1| PREDICTED: transcription factor bHLH62-like [Glycine max] Back     alignment and taxonomy information
>gi|356558973|ref|XP_003547776.1| PREDICTED: transcription factor bHLH62-like [Glycine max] Back     alignment and taxonomy information
>gi|356503048|ref|XP_003520324.1| PREDICTED: transcription factor bHLH62-like [Glycine max] Back     alignment and taxonomy information
>gi|388499536|gb|AFK37834.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|359477937|ref|XP_002264969.2| PREDICTED: transcription factor bHLH62-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147786897|emb|CAN73299.1| hypothetical protein VITISV_005183 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357513299|ref|XP_003626938.1| BHLH transcription factor [Medicago truncatula] gi|355520960|gb|AET01414.1| BHLH transcription factor [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query553
TAIR|locus:2079676456 AT3G07340 "AT3G07340" [Arabido 0.359 0.436 0.616 1.3e-80
TAIR|locus:2152551498 AT5G48560 "AT5G48560" [Arabido 0.470 0.522 0.548 2.9e-72
UNIPROTKB|Q5N802481 P0004D12.24 "BHLH transcriptio 0.518 0.596 0.486 6.8e-65
UNIPROTKB|Q84QW1405 OJ1191_A10.109 "BHLH transcrip 0.506 0.691 0.447 2.4e-51
TAIR|locus:2095198371 AT3G23690 "AT3G23690" [Arabido 0.338 0.504 0.538 1.8e-50
TAIR|locus:2201906366 AT1G10120 "AT1G10120" [Arabido 0.213 0.322 0.640 1.2e-39
UNIPROTKB|Q69JJ6428 OSJNBa0026C08.22 "TA1 protein- 0.296 0.383 0.556 1.8e-39
TAIR|locus:2028804390 CIB5 "AT1G26260" [Arabidopsis 0.182 0.258 0.735 5.1e-39
UNIPROTKB|Q5VR96437 P0038C05.31-1 "Os06g0275600 pr 0.417 0.528 0.440 1.3e-38
TAIR|locus:2205420486 AT1G68920 [Arabidopsis thalian 0.410 0.467 0.431 4.3e-38
TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 601 (216.6 bits), Expect = 1.3e-80, Sum P(4) = 1.3e-80
 Identities = 130/211 (61%), Positives = 153/211 (72%)

Query:   346 YIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSL 405
             YIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSL
Sbjct:   255 YIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSL 314

Query:   406 QRQVEFLSMKLASVNTRLELNVDALMSKDIYQPNKPLPH--SIFQIDSSASAFFSHQPQQ 463
             QRQVEFLSMKL+SVNTRL+ N+DAL+SKDI+  +  L H   + Q+DSSA         +
Sbjct:   315 QRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPSSNNLMHHQQVLQLDSSAETLLGDHHNK 374

Query:   464 NPALHGNISNGTMTQCPVDPLDNALCRNLSMQLPQLEQFTETIPQFQNFGEDDLQSIVQM 523
             N  L+ +IS+  +    ++PL+ +  R+    LP L  FT++I Q+  F EDDL SI+ M
Sbjct:   375 NLQLNPDISSNNV----INPLETSETRSFISHLPTLAHFTDSISQYSTFSEDDLHSIIHM 430

Query:   524 GFGQNPNSETSLQSQSFHGSNQAP-HMKAEL 553
             GF QN      LQ  +   SNQ P HMKAEL
Sbjct:   431 GFAQN-----RLQELNQGSSNQVPSHMKAEL 456
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2152551 AT5G48560 "AT5G48560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q84QW1 OJ1191_A10.109 "BHLH transcription factor(GBOF-1)-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2095198 AT3G23690 "AT3G23690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201906 AT1G10120 "AT1G10120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q69JJ6 OSJNBa0026C08.22 "TA1 protein-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2028804 CIB5 "AT1G26260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2205420 AT1G68920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SRT2BH062_ARATHNo assigned EC number0.46520.81010.9824yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00002538
hypothetical protein (563 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query553
smart0035353 smart00353, HLH, helix loop helix domain 5e-11
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 8e-10
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 4e-08
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information 
 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 361 SLAERVRREKISERMKLLQDLVPGCNKVTG--KALMLDEIINYVQSLQRQVE 410
           +  ER RR KI+E    L+ L+P   K     KA +L   I Y++SLQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 553
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.32
smart0035353 HLH helix loop helix domain. 99.26
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.21
KOG1318411 consensus Helix loop helix transcription factor EB 99.2
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.77
KOG4304250 consensus Transcriptional repressors of the hairy/ 98.63
KOG3910632 consensus Helix loop helix transcription factor [T 98.54
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 98.16
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 97.87
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.86
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.31
PLN0321793 transcription factor ATBS1; Provisional 97.22
KOG0561 373 consensus bHLH transcription factor [Transcription 97.19
KOG4029228 consensus Transcription factor HAND2/Transcription 96.77
KOG4447173 consensus Transcription factor TWIST [Transcriptio 89.51
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 86.97
KOG3898254 consensus Transcription factor NeuroD and related 86.13
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 83.22
KOG4395285 consensus Transcription factor Atonal, contains HT 82.81
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
Probab=99.32  E-value=1.6e-12  Score=100.36  Aligned_cols=53  Identities=36%  Similarity=0.632  Sum_probs=48.4

Q ss_pred             CCccchHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHH
Q 044652          357 TDSHSLAERVRREKISERMKLLQDLVPGC---NKVTGKALMLDEIINYVQSLQRQVE  410 (553)
Q Consensus       357 t~sHslaERrRReKINerfkaLr~LVPg~---sK~tdKAsILdeAIdYIK~LQ~QVq  410 (553)
                      +..|+..||+||++||+.|..|+.+||.+   .| .+|+.||+.||+||+.|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k-~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKK-LSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhC
Confidence            34699999999999999999999999998   55 4999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription] Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query553
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 2e-18
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 5e-08
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 2e-07
1hlo_A80 Protein (transcription factor MAX); transcriptiona 2e-06
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
 Score = 79.0 bits (195), Expect = 2e-18
 Identities = 20/75 (26%), Positives = 40/75 (53%)

Query: 352 RRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEF 411
            RG+   +H+  E+  R  I++++  L+DLV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 412 LSMKLASVNTRLELN 426
           L  +  S+ T +  +
Sbjct: 62  LKQENLSLRTAVHKS 76
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query553
4ati_A118 MITF, microphthalmia-associated transcription fact 99.63
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.61
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.5
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.5
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.49
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.45
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.42
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.41
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.36
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.31
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.19
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.93
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.85
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.82
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.82
4ath_A83 MITF, microphthalmia-associated transcription fact 98.48
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.32
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.74
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
Probab=99.63  E-value=2.6e-16  Score=139.55  Aligned_cols=89  Identities=33%  Similarity=0.458  Sum_probs=50.9

Q ss_pred             CCccchhhccccCCCCCccchHHHHHHHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHHH---
Q 044652          342 PPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNK---VTGKALMLDEIINYVQSLQRQVEFLSMK---  415 (553)
Q Consensus       342 pp~d~i~~RaRRg~at~sHslaERrRReKINerfkaLr~LVPg~sK---~tdKAsILdeAIdYIK~LQ~QVq~Le~k---  415 (553)
                      ++.+..+.+.|+++++..|+++||+||++||++|.+|++|||.|.+   ..+|++||++||+||++||.+++.|+..   
T Consensus        13 ~t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~   92 (118)
T 4ati_A           13 PTESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR   92 (118)
T ss_dssp             ------------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             CCcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667888888999999999999999999999999999999853   2489999999999999999999999864   


Q ss_pred             ---hhhcccccccccccc
Q 044652          416 ---LASVNTRLELNVDAL  430 (553)
Q Consensus       416 ---l~~vn~~l~~~~~~~  430 (553)
                         +...|..|-..|..|
T Consensus        93 ~~~l~~~n~~L~~riqeL  110 (118)
T 4ati_A           93 QKKLEHANRHLLLRVQEL  110 (118)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence               333444444444443
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 553
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 3e-15
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 6e-15
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 1e-13
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 2e-12
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 5e-12
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 1e-11
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 8e-11
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 8e-10
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (167), Expect = 3e-15
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 368 REKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLELN 426
           R  I++++  L+DLV G +    K+ +L + I+Y++ LQ+    L  +   +    + N
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKN 59
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query553
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.51
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.43
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.4
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.38
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.37
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.36
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.35
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.32
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.7e-15  Score=123.34  Aligned_cols=65  Identities=28%  Similarity=0.390  Sum_probs=59.0

Q ss_pred             CccchHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 044652          358 DSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTR  422 (553)
Q Consensus       358 ~sHslaERrRReKINerfkaLr~LVPg~sK~tdKAsILdeAIdYIK~LQ~QVq~Le~kl~~vn~~  422 (553)
                      ..|+.+||+||++||+.|..|++|||++...++|++||.+||+||+.|+++++.|.+++..+...
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~   72 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA   72 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999987556999999999999999999999999888766443
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure