Citrus Sinensis ID: 044677

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
SQSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIAQHKNPSESSS
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
SQSKVVTALKSldisqspketsehhHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLipiesslrekvssppriqtppiQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTqeeldaddttlKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNiaqhknpsesss
Flexible Loop (DISEMBL)
sqskvvtalksldisqspketsehhHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESslrekvssppriQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQEEEMKLKERCEETkkelsrktrqfedwynkyitrrtqeeldaddttlkdavterkfVVDVLKKRLEEEEEAyqrqcgavreksLTSLRNHLPELFKAMSEISFACSGMYRDLKNIaqhknpsesss
Low Complexity Region (SEG)
SQSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQeeemklkerceeTKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIAQHKNPSESSS
Disordered region (IsUnstruct)
***************************RTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIE****************PIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIMH*************************FEDWYNKYITRRTQ*******TTLKDAVTERKFVVDVLKKRL*********QCGAV****LTSLRNHLPELFKAMSEISFACSGMYRDLK*************
Disordered Region (DISOPRED)
SQSKVVTAL*******************TIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNL*********************IQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIMH***********************************************************V******************GAVREKSLTSLRNHLPELFKAMSEISFACSGMYR****************
Disordered Region (DISEMBL)
SQSKVVTALKSL***************RTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSL********RIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQE******************KTRQFEDWYNKYITRRTQEELDADDTTLKDAVTERKFVVDVLKKRLE**********GAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIA**********
Disordered Region (DISPRO)
*QSKVVTALKSLDISQ*PKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPI*********S**RIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRT*************AVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIAQ*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SQSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTxxxxxxxxxxxxxxxxxxxxxxxxxxxxFEDWYNKYITRRTQEELDADDTTLKDAVTERKFVVDVLxxxxxxxxxxxxxxxxxxxxxSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIAQHKNPSESSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
224059054	387	predicted protein [Populus trichocarpa]	0.984	0.635	0.670	5e-95
224073872	389	predicted protein [Populus trichocarpa]	0.96	0.616	0.683	1e-94
356547402	749	PREDICTED: uncharacterized protein LOC10	0.988	0.329	0.629	2e-88
225442649	722	PREDICTED: uncharacterized protein LOC10	0.984	0.340	0.634	3e-88
356557273	718	PREDICTED: uncharacterized protein LOC10	0.964	0.335	0.622	3e-86
110736990	798	putative bZIP protein [Arabidopsis thali	0.996	0.312	0.596	1e-85
145361477	798	uncharacterized protein [Arabidopsis tha	0.996	0.312	0.596	1e-85
186490344	472	uncharacterized protein [Arabidopsis tha	0.996	0.527	0.596	1e-85
15450411	398	At1g52320/F19K6_7 [Arabidopsis thaliana]	0.996	0.625	0.596	2e-85
357454977	760	hypothetical protein MTR_2g102050 [Medic	0.964	0.317	0.618	2e-85

>gi|224059054|ref|XP_002299694.1| predicted protein [Populus trichocarpa] gi|222846952|gb|EEE84499.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 167/249 (67%), Positives = 208/249 (83%), Gaps = 3/249 (1%)

Query: 1   SQSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSW 60
           +QSK+V AL++LDISQSPKETSEHHH+RT QL  VVQ W SQFCKLID+QK YI+ALNSW
Sbjct: 139 AQSKIVNALRALDISQSPKETSEHHHDRTFQLLVVVQGWQSQFCKLIDNQKGYIRALNSW 198

Query: 61  LKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTI 120
           LKLNLIPIESSL+EKVSSPPR+Q PPIQ LL+AWHD L KLPDE+AR+AI NFA++I+TI
Sbjct: 199 LKLNLIPIESSLKEKVSSPPRVQNPPIQSLLIAWHDFLDKLPDEVARTAINNFASVIHTI 258

Query: 121 MHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELD---ADDTTLKDAVTE 177
           + HQEEEMKLKE+CEET+KEL +KTR+FEDWY+KY+ ++   E D    +D +  DA+ +
Sbjct: 259 LQHQEEEMKLKEKCEETRKELFQKTRKFEDWYHKYMQQKMPAEFDPELTEDKSDNDAIAD 318

Query: 178 RKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLK 237
           R+FVVD +KKRLEEEEEAY++Q   VREKSL S++  LPELF+AM +I+ ACS MYR+L+
Sbjct: 319 RQFVVDAVKKRLEEEEEAYKKQRLQVREKSLASIKTCLPELFRAMFDIAQACSEMYRNLR 378

Query: 238 NIAQHKNPS 246
            I+Q +N  
Sbjct: 379 FISQRRNAG 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073872|ref|XP_002304191.1| predicted protein [Populus trichocarpa] gi|222841623|gb|EEE79170.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 166/243 (68%), Positives = 208/243 (85%), Gaps = 3/243 (1%)

Query: 2   QSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWL 61
           QSK+V AL+ LDISQS KETSEHHH+RT QL  VVQEW SQFCKLID+QKAYIK+LNSWL
Sbjct: 140 QSKIVNALRFLDISQSSKETSEHHHDRTFQLLVVVQEWQSQFCKLIDNQKAYIKSLNSWL 199

Query: 62  KLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIM 121
           KLNLIPIES+L+EKVSSPPR++ PPIQ LL+AWHD L KLPDE+AR+AI NFAA+I+TI+
Sbjct: 200 KLNLIPIESNLKEKVSSPPRVRNPPIQPLLIAWHDFLDKLPDEVARTAINNFAAVIHTIL 259

Query: 122 HHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELD---ADDTTLKDAVTER 178
            HQEEEMKLKE+CEET+KELS+K R++EDW+ KY+ +RT +ELD    +D +  DA+ ER
Sbjct: 260 QHQEEEMKLKEKCEETRKELSQKMRKYEDWWRKYMQQRTPDELDPERTEDNSHNDAIAER 319

Query: 179 KFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKN 238
           + VVD +K RL+EEEEAY++QC  VREKS+ SL+  LPELF+AMSE++ ACS MY++L++
Sbjct: 320 QSVVDAVKNRLKEEEEAYRKQCLQVREKSMASLKTRLPELFRAMSEVAHACSEMYKNLRS 379

Query: 239 IAQ 241
           I+Q
Sbjct: 380 ISQ 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547402|ref|XP_003542101.1| PREDICTED: uncharacterized protein LOC100791852 [Glycine max]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/251 (62%), Positives = 202/251 (80%), Gaps = 4/251 (1%)

Query: 2   QSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWL 61
           QS  VT+L++LDISQSPK TSEHH++RT QL  VVQ+W+S F KL++HQK YIKALN+WL
Sbjct: 499 QSDTVTSLRNLDISQSPKTTSEHHYDRTYQLVLVVQQWHSHFEKLVNHQKGYIKALNTWL 558

Query: 62  KLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIM 121
           KLN+IPIES+L+EKVSSPPR+++PPIQ LL AW+D L KLPDE+AR+AIGNF  +I TI 
Sbjct: 559 KLNIIPIESNLKEKVSSPPRVRSPPIQGLLNAWNDRLDKLPDELARTAIGNFVNVIETIY 618

Query: 122 HHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDAD---DTTLKD-AVTE 177
           H QEEE+ LK +CE+T+KELSRKTRQFEDWYNKY+ ++  +E + D   D    D  VTE
Sbjct: 619 HQQEEEIALKRKCEDTRKELSRKTRQFEDWYNKYMQKKIPDEYNPDRAEDANAPDEVVTE 678

Query: 178 RKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLK 237
           R+F V+++KKRLE+EEEAY RQC  VR+K+L SL+N +PELF+AMS+ S  CS MY +L+
Sbjct: 679 RQFAVELVKKRLEDEEEAYARQCLQVRQKTLGSLKNRMPELFRAMSDFSLECSRMYSELR 738

Query: 238 NIAQHKNPSES 248
           +I+QH   S S
Sbjct: 739 SISQHLGQSSS 749

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442649|ref|XP_002279674.1| PREDICTED: uncharacterized protein LOC100241173 [Vitis vinifera]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 158/249 (63%), Positives = 199/249 (79%), Gaps = 3/249 (1%)

Query: 1   SQSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSW 60
           SQSK   ALKSLDISQSPKETSEHHH+RTIQLW VVQEW+SQF KL+ +QK YI AL  W
Sbjct: 472 SQSKTAMALKSLDISQSPKETSEHHHKRTIQLWIVVQEWHSQFDKLVTNQKNYITALKKW 531

Query: 61  LKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTI 120
           L+LNLIPIES+L+EKVSSPPR Q PPIQ LL AW+D L+KLPDE+A+++I NFAA+I TI
Sbjct: 532 LRLNLIPIESNLKEKVSSPPRPQNPPIQALLQAWNDHLEKLPDELAKTSISNFAAIIETI 591

Query: 121 MHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELD---ADDTTLKDAVTE 177
           M HQ++EM+LK +CEET KEL RKTRQF DW++KY+ +R  +E D   + D    + V E
Sbjct: 592 MQHQQDEMRLKAKCEETAKELERKTRQFNDWHSKYMQKRIPDENDREHSGDDPHDEVVIE 651

Query: 178 RKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLK 237
           RK VV+ L  RL++EEE YQ++C  VR+KSL SL+NHLPELF+A+SE S+ACS MY  L+
Sbjct: 652 RKLVVETLSNRLKDEEETYQKECVLVRDKSLASLKNHLPELFRALSEFSYACSDMYSRLR 711

Query: 238 NIAQHKNPS 246
           +I++ + P+
Sbjct: 712 SISRSQKPA 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557273|ref|XP_003546942.1| PREDICTED: uncharacterized protein LOC100780700 [Glycine max]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 152/244 (62%), Positives = 196/244 (80%), Gaps = 3/244 (1%)

Query: 2   QSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWL 61
           QS+ VT L++LDISQSPK TSEHH++RT QL+ VVQ+W+S F  L++HQK YIKALN+WL
Sbjct: 469 QSETVTLLRNLDISQSPKTTSEHHYDRTYQLFLVVQQWHSHFENLVNHQKGYIKALNTWL 528

Query: 62  KLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIM 121
           KLN+IPIESSL+EKVSSPPR+++PPIQ LL AW+D L KLPDE+AR+AIGNF A+I TI 
Sbjct: 529 KLNIIPIESSLKEKVSSPPRVRSPPIQGLLYAWNDRLDKLPDELARTAIGNFVAVIETIY 588

Query: 122 HHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDAD---DTTLKDAVTER 178
           H Q+EE+ LK +CE+T+KELSRKTRQFEDWYNKY+ ++  +E + D   D    D V  R
Sbjct: 589 HQQQEEIALKRKCEDTRKELSRKTRQFEDWYNKYMQKKIPDEYNPDRAEDANAPDEVVTR 648

Query: 179 KFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKN 238
           +  V+ +KKRLE+EEEAY RQC  VR+K+L SL+N +PELF+AMS+ S  CS MY +L+ 
Sbjct: 649 QSAVEQVKKRLEDEEEAYARQCLQVRQKTLVSLKNRMPELFRAMSDFSLECSRMYSELRP 708

Query: 239 IAQH 242
           I+Q+
Sbjct: 709 ISQN 712

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110736990|dbj|BAF00450.1| putative bZIP protein [Arabidopsis thaliana]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/258 (59%), Positives = 199/258 (77%), Gaps = 9/258 (3%)

Query: 2   QSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWL 61
           Q+++   L+SLD+SQ+ KET++HHHERTIQL AVVQEW++QFC++IDHQK YIKAL  WL
Sbjct: 540 QAEISKVLRSLDVSQAVKETNDHHHERTIQLLAVVQEWHTQFCRMIDHQKEYIKALGGWL 599

Query: 62  KLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIM 121
           KLNLIPIES+L+EKVSSPPR+  P IQ+LL AW+D L K+PDE+A+SAI NFAA+++TIM
Sbjct: 600 KLNLIPIESTLKEKVSSPPRVPNPAIQKLLHAWYDRLDKIPDEMAKSAIINFAAVVSTIM 659

Query: 122 HHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDAD--DTTLKDAVTERK 179
             QE+E+ L+ +CEET+KEL RK RQFEDWY+KYI +R  E ++ D  D    D V  R+
Sbjct: 660 QQQEDEISLRNKCEETRKELGRKIRQFEDWYHKYIQKRGPEGMNPDEADNDHNDEVAVRQ 719

Query: 180 FVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNI 239
           F V+ +KKRLEEEEEAY RQ   VREKSL SLR  LPELF+AMSE++++CS MYR +   
Sbjct: 720 FNVEQIKKRLEEEEEAYHRQSHQVREKSLASLRTRLPELFQAMSEVAYSCSDMYRAITYA 779

Query: 240 AQ-------HKNPSESSS 250
           ++       H+ PS+  S
Sbjct: 780 SKRQSQSERHQKPSQGQS 797

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145361477|ref|NP_849796.2| uncharacterized protein [Arabidopsis thaliana] gi|12323124|gb|AAG51544.1|AC037424_9 bZIP protein, putative; 48652-45869 [Arabidopsis thaliana] gi|332194662|gb|AEE32783.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/258 (59%), Positives = 199/258 (77%), Gaps = 9/258 (3%)

Query: 2   QSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWL 61
           Q+++   L+SLD+SQ+ KET++HHHERTIQL AVVQEW++QFC++IDHQK YIKAL  WL
Sbjct: 540 QAEISKVLRSLDVSQAVKETNDHHHERTIQLLAVVQEWHTQFCRMIDHQKEYIKALGGWL 599

Query: 62  KLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIM 121
           KLNLIPIES+L+EKVSSPPR+  P IQ+LL AW+D L K+PDE+A+SAI NFAA+++TIM
Sbjct: 600 KLNLIPIESTLKEKVSSPPRVPNPAIQKLLHAWYDRLDKIPDEMAKSAIINFAAVVSTIM 659

Query: 122 HHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDAD--DTTLKDAVTERK 179
             QE+E+ L+ +CEET+KEL RK RQFEDWY+KYI +R  E ++ D  D    D V  R+
Sbjct: 660 QQQEDEISLRNKCEETRKELGRKIRQFEDWYHKYIQKRGPEGMNPDEADNDHNDEVAVRQ 719

Query: 180 FVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNI 239
           F V+ +KKRLEEEEEAY RQ   VREKSL SLR  LPELF+AMSE++++CS MYR +   
Sbjct: 720 FNVEQIKKRLEEEEEAYHRQSHQVREKSLASLRTRLPELFQAMSEVAYSCSDMYRAITYA 779

Query: 240 AQ-------HKNPSESSS 250
           ++       H+ PS+  S
Sbjct: 780 SKRQSQSERHQKPSQGQS 797

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186490344|ref|NP_001117469.1| uncharacterized protein [Arabidopsis thaliana] gi|186490347|ref|NP_001117470.1| uncharacterized protein [Arabidopsis thaliana] gi|240254248|ref|NP_564604.4| uncharacterized protein [Arabidopsis thaliana] gi|332194661|gb|AEE32782.1| uncharacterized protein [Arabidopsis thaliana] gi|332194663|gb|AEE32784.1| uncharacterized protein [Arabidopsis thaliana] gi|332194664|gb|AEE32785.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/258 (59%), Positives = 199/258 (77%), Gaps = 9/258 (3%)

Query: 2   QSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWL 61
           Q+++   L+SLD+SQ+ KET++HHHERTIQL AVVQEW++QFC++IDHQK YIKAL  WL
Sbjct: 214 QAEISKVLRSLDVSQAVKETNDHHHERTIQLLAVVQEWHTQFCRMIDHQKEYIKALGGWL 273

Query: 62  KLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIM 121
           KLNLIPIES+L+EKVSSPPR+  P IQ+LL AW+D L K+PDE+A+SAI NFAA+++TIM
Sbjct: 274 KLNLIPIESTLKEKVSSPPRVPNPAIQKLLHAWYDRLDKIPDEMAKSAIINFAAVVSTIM 333

Query: 122 HHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDAD--DTTLKDAVTERK 179
             QE+E+ L+ +CEET+KEL RK RQFEDWY+KYI +R  E ++ D  D    D V  R+
Sbjct: 334 QQQEDEISLRNKCEETRKELGRKIRQFEDWYHKYIQKRGPEGMNPDEADNDHNDEVAVRQ 393

Query: 180 FVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNI 239
           F V+ +KKRLEEEEEAY RQ   VREKSL SLR  LPELF+AMSE++++CS MYR +   
Sbjct: 394 FNVEQIKKRLEEEEEAYHRQSHQVREKSLASLRTRLPELFQAMSEVAYSCSDMYRAITYA 453

Query: 240 AQ-------HKNPSESSS 250
           ++       H+ PS+  S
Sbjct: 454 SKRQSQSERHQKPSQGQS 471

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15450411|gb|AAK96499.1| At1g52320/F19K6_7 [Arabidopsis thaliana] gi|23308427|gb|AAN18183.1| At1g52320/F19K6_7 [Arabidopsis thaliana] gi|62320232|dbj|BAD94485.1| bZIP protein [Arabidopsis thaliana]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/258 (59%), Positives = 199/258 (77%), Gaps = 9/258 (3%)

Query: 2   QSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWL 61
           Q+++   L+SLD+SQ+ KET++HHHERTIQL AVVQEW++QFC++IDHQK YIKAL  WL
Sbjct: 140 QAEISKVLRSLDVSQAVKETNDHHHERTIQLLAVVQEWHTQFCRMIDHQKEYIKALGGWL 199

Query: 62  KLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIM 121
           KLNLIPIES+L+EKVSSPPR+  P IQ+LL AW+D L K+PDE+A+SAI NFAA+++TIM
Sbjct: 200 KLNLIPIESTLKEKVSSPPRVPNPAIQKLLHAWYDRLDKIPDEMAKSAIINFAAVVSTIM 259

Query: 122 HHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDAD--DTTLKDAVTERK 179
             QE+E+ L+ +CEET+KEL RK RQFEDWY+KYI +R  E ++ D  D    D V  R+
Sbjct: 260 QQQEDEISLRNKCEETRKELGRKIRQFEDWYHKYIQKRGPEGMNPDEADNDHNDEVAVRQ 319

Query: 180 FVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNI 239
           F V+ +KKRLEEEEEAY RQ   VREKSL SLR  LPELF+AMSE++++CS MYR +   
Sbjct: 320 FNVEQIKKRLEEEEEAYHRQSHQVREKSLASLRTRLPELFQAMSEVAYSCSDMYRAITYA 379

Query: 240 AQ-------HKNPSESSS 250
           ++       H+ PS+  S
Sbjct: 380 SKRQSQSERHQKPSQGQS 397

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454977|ref|XP_003597769.1| hypothetical protein MTR_2g102050 [Medicago truncatula] gi|355486817|gb|AES68020.1| hypothetical protein MTR_2g102050 [Medicago truncatula]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 151/244 (61%), Positives = 201/244 (82%), Gaps = 3/244 (1%)

Query: 2   QSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWL 61
           QS+ VT L+SLD SQSPK+TSEHHHERT QL  VVQ+W+ QF  L+++QK YIK+L++WL
Sbjct: 511 QSETVTLLRSLDPSQSPKQTSEHHHERTYQLLVVVQQWHLQFEMLVNNQKGYIKSLSNWL 570

Query: 62  KLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIM 121
           KLNLIPIESSL+EKVSSPPR+++PP+Q LL AWHD L+K+PD++AR+AIGNFAA+I+TI 
Sbjct: 571 KLNLIPIESSLKEKVSSPPRVRSPPVQGLLHAWHDRLEKIPDDLARTAIGNFAAVIDTIF 630

Query: 122 HHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELD--ADDTTLKD-AVTER 178
           + QE+EM LK +CEE++KELSRKTRQFEDWY+KY+ R+  EE+D  A+D    D  VTE+
Sbjct: 631 NQQEDEMVLKRKCEESRKELSRKTRQFEDWYHKYMQRKMPEEVDPEAEDANAPDEVVTEK 690

Query: 179 KFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKN 238
           +F+V+ ++KRLE EE  Y++QC  VR+K+L SL+N +PELF+AM + S  CS MY +L +
Sbjct: 691 QFLVEQVRKRLEHEEAEYEKQCIQVRQKTLGSLKNRMPELFRAMCDFSLECSKMYMELGS 750

Query: 239 IAQH 242
           I+QH
Sbjct: 751 ISQH 754

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2018174	798	AT1G52320 "AT1G52320" [Arabido	0.984	0.308	0.588	1.2e-74
TAIR|locus:2179504	775	AT5G25590 [Arabidopsis thalian	0.964	0.310	0.542	5.2e-65
TAIR|locus:2081922	796	AT3G60320 "AT3G60320" [Arabido	0.876	0.275	0.256	6.3e-16
TAIR|locus:2036900	953	AT1G21740 [Arabidopsis thalian	0.848	0.222	0.195	2e-06
TAIR|locus:2030382	614	AT1G20530 "AT1G20530" [Arabido	0.44	0.179	0.292	0.00026

TAIR|locus:2018174 AT1G52320 "AT1G52320" [Arabidopsis thaliana (taxid:3702)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 146/248 (58%), Positives = 187/248 (75%)

Query:     2 QSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWL 61
             Q+++   L+SLD+SQ+ KET++HHHERTIQL AVVQEW++QFC++IDHQK YIKAL  WL
Sbjct:   540 QAEISKVLRSLDVSQAVKETNDHHHERTIQLLAVVQEWHTQFCRMIDHQKEYIKALGGWL 599

Query:    62 KLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIM 121
             KLNLIPIES+L+EKVSSPPR+  P IQ+LL AW+D L K+PDE+A+SAI NFAA+++TIM
Sbjct:   600 KLNLIPIESTLKEKVSSPPRVPNPAIQKLLHAWYDRLDKIPDEMAKSAIINFAAVVSTIM 659

Query:   122 HHQXXXXXXXXXXXXTKKELSRKTRQFEDWYNKYITRRTQEELDAD--DTTLKDAVTERK 179
               Q            T+KEL RK RQFEDWY+KYI +R  E ++ D  D    D V  R+
Sbjct:   660 QQQEDEISLRNKCEETRKELGRKIRQFEDWYHKYIQKRGPEGMNPDEADNDHNDEVAVRQ 719

Query:   180 FVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNI 239
             F V+ +KKRLEEEEEAY RQ   VREKSL SLR  LPELF+AMSE++++CS MYR +   
Sbjct:   720 FNVEQIKKRLEEEEEAYHRQSHQVREKSLASLRTRLPELFQAMSEVAYSCSDMYRAITYA 779

Query:   240 AQHKNPSE 247
             ++ ++ SE
Sbjct:   780 SKRQSQSE 787

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2179504 AT5G25590 [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 133/245 (54%), Positives = 174/245 (71%)

Query:     1 SQSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSW 60
             +Q  +V  LK+L+IS S KET++ HH +T Q   V++EW+ QF  L+ HQK YI +LN+W
Sbjct:   519 TQLGIVGELKALEISTSLKETTKQHHHQTRQFCTVLEEWHVQFDTLVTHQKQYINSLNNW 578

Query:    61 LKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTI 120
             LKLNLIPIESSL+EKVSSPPR Q PPIQ LL +WHD L+KLPDE+A+SAI +FAA+I TI
Sbjct:   579 LKLNLIPIESSLKEKVSSPPRPQRPPIQALLHSWHDRLEKLPDEVAKSAISSFAAVIKTI 638

Query:   121 MHHQXXXXXXXXXXXXTKKELSRKTRQFEDWYNKYITRR--TQEELDADDTTL--KDAVT 176
             + HQ            T++E  RK + FEDWY K++ +R  T+E    DD T   +D VT
Sbjct:   639 LLHQEEEMKLKEKCEETRREFIRKKQGFEDWYQKHLQKRGPTEEAEGGDDATTSSRDHVT 698

Query:   177 ERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDL 236
             ER+  V+ LKKRLEEEEEA+QR C  VREKSL SL+  LPE+F+A+S+ + AC+  Y  L
Sbjct:   699 ERRIAVETLKKRLEEEEEAHQRHCVQVREKSLNSLKIRLPEIFRALSDYAHACADSYEKL 758

Query:   237 KNIAQ 241
             + I+Q
Sbjct:   759 RIISQ 763

GO:0005634 "nucleus" evidence=ISM

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2081922 AT3G60320 "AT3G60320" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 6.3e-16, P = 6.3e-16
 Identities = 61/238 (25%), Positives = 113/238 (47%)

Query:     1 SQSKVVTALKSLDISQSPK--ETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALN 58
             +Q+ +V  ++ L I++S K   TSE H + T  L + V  W+S F  LI  Q+ +I +++
Sbjct:   548 TQNSIVEQVRGL-INRSGKGESTSELHRQATRDLESAVSSWHSSFSSLIKFQRDFIHSVH 606

Query:    59 SWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLA--WHDLLQKLPDEIARSAIGNFAAL 116
             +W KL L+P+    +E  ++  +    P+        W   L ++PD +A  AI +F  +
Sbjct:   607 AWFKLTLLPV---CQEDAANHHK---EPLDAYAFCDEWKLALDRIPDTVASEAIKSFINV 660

Query:   117 INTIMHHQXXXXXXXXXXXXTKKELSRKTRQFEDWYNKYITRRTQ-----EELDADDTTL 171
             ++ I   Q              KEL +K     +   KY    +       E   D+  +
Sbjct:   661 VHVISAKQADEHKIKKRTESASKELEKKASSVRNLERKYYQSYSMVGVGLPESGPDNQHM 720

Query:   172 KDA---VTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEIS 226
              DA   ++++K  + V ++R+EEE   Y +     R  +L +L+  LP +F++++  S
Sbjct:   721 LDARDPLSDKKSELAVCQRRVEEEMVKYSKAIEVTRAMTLNNLQTGLPGVFQSLTSFS 778

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2036900 AT1G21740 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 43/220 (19%), Positives = 94/220 (42%)

Query:    36 VQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVS--SPPRIQTPPIQRLLLA 93
             ++EW   F   ++ QK+Y+++LN WL   L     S  + ++  SP R+  P +  +   
Sbjct:   733 LREWCISFNDWVNTQKSYVESLNGWLSRCLHYEPESTEDGIAPFSPSRVGAPQVFVICKD 792

Query:    94 WHDLLQKLPDEIARSAIGNFAALINTIMHHQXXXXXXXXXXXXTKKELSRKTRQFEDWYN 153
             W + + ++  E   +A+  FA+ ++ +   Q               +  ++         
Sbjct:   793 WQEAMARISGENVSNAMQGFASSLHELWERQDEEQRQRVKAEYVSHDFEKRLNDLRMERA 852

Query:   154 KYITRRTQEELDADDTTLK------DAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKS 207
             +   R  Q +  A + ++        A+ + K  +D ++K+LEEE   ++     V   +
Sbjct:   853 RVRMRNDQLQDGASEKSVVLSESGISALDDLKVDLDSMRKKLEEERARHKETIKLVNNAA 912

Query:   208 LTSLRNHLPELFKAMSEISFACSGMYRDLKNIAQHKNPSE 247
              +SL+  L  +F+A+   +      + D++   Q +  SE
Sbjct:   913 SSSLQAGLVPIFEALGNFTSQVVKAHEDVRFQQQQQPESE 952

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2030382 AT1G20530 "AT1G20530" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 36/123 (29%), Positives = 55/123 (44%)

Query:     2 QSKVVTALKSLDISQSPKETSEHHH-ERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSW 60
             QSKV+   K LD   + KE  +    E  ++L   ++ W+      ID Q  Y+KALN+W
Sbjct:   417 QSKVIAEAKKLD-KMTIKENLDLSQLELAMELKLELRNWSLSMSNWIDAQAQYVKALNNW 475

Query:    61 LKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTI 120
             L   L   +   +E   +P   + PP+   +  W    Q L  EI+      F   + TI
Sbjct:   476 LMRCL---KQEPQEP--TPDLSEEPPLFGAINTWS---QNL--EISHGE-KEFTEAVYTI 524

Query:   121 MHH 123
             + H
Sbjct:   525 LMH 527

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_I000533 hypothetical protein (387 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
pfam04782	309	pfam04782, DUF632, Protein of unknown function (DU	4e-36

>gnl|CDD|218262 pfam04782, DUF632, Protein of unknown function (DUF632)

 Score =  129 bits (327), Expect = 4e-36
 Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 2/121 (1%)

Query: 2   QSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWL 61
           Q  ++   K LD S S K TSE H + T+QL A ++EW+S F   ID Q++Y+KALN WL
Sbjct: 189 QLHIIQEAKLLDSSPSGKPTSESHRQATLQLEAELREWHSSFSNWIDAQRSYVKALNGWL 248

Query: 62  KLNLIP--IESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINT 119
           KL LIP  IE+   E   SP R+  PPI  L   W   L++LPD+  + AI +FA++++T
Sbjct: 249 KLCLIPEPIETDDGEPPFSPGRLGAPPIFALCEEWSQALERLPDKEVKEAIKSFASVVHT 308

Query: 120 I 120
           I
Sbjct: 309 I 309

This plant protein may be a leucine zipper, but there is no experimental evidence for this. Length = 309

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
PF04782	312	DUF632: Protein of unknown function (DUF632); Inte	100.0
cd07599	216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	96.76
cd07591	224	BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o	95.82
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	93.62
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	91.52
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	89.9
cd07675	252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	89.8
cd07657	237	F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin	87.82
cd07598	211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	86.87
cd07680	258	F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin	82.69
cd07604	215	BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of	81.89
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	81.15

>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain

Probab=100.00  E-value=4.1e-42  Score=316.23  Aligned_cols=120  Identities=47%  Similarity=0.689  Sum_probs=116.4

Q ss_pred             CHHHHHHHhccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccccccccCCCCC
Q 044677            1 SQSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNL--IPIESSLREKVSS   78 (250)
Q Consensus         1 ~Q~~ii~~~k~l~~~~~~~~tse~h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~--~p~e~~~~~~~~s   78 (250)
                      .|++||+++++|++++++++||++||+||+|||.||++|++||++||++||+||+||||||++|+  .|++++++++|+|
T Consensus       191 ~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~~sF~~~i~~Qk~YV~aLn~WL~~~l~~~~~~~~~~~~~~s  270 (312)
T PF04782_consen  191 KQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWHSSFCKWIKAQKSYVKALNGWLKLCLMQEPEETSDGRPPSS  270 (312)
T ss_pred             HHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCC
Confidence            49999999999999999999999999999999999999999999999999999999999999999  5778888999999


Q ss_pred             CCCCCCChHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q 044677           79 PPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTI  120 (250)
Q Consensus        79 P~r~~aPpIf~lC~~W~~~ld~lp~k~v~~AIk~f~~~v~~i  120 (250)
                      |+|.++||||+||++|+++||+||+++|++||++|+++||+|
T Consensus       271 p~~~~aPpIf~lC~~W~~aLd~lp~k~v~~AIk~f~~~v~~i  312 (312)
T PF04782_consen  271 PRRSGAPPIFVLCNDWSQALDRLPDKEVSEAIKSFAAVVHHI  312 (312)
T ss_pred             ccccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999986

The proteins are found only in plants and their functions are unknown.

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins

Probab=96.76  E-value=0.34  Score=42.39  Aligned_cols=180  Identities=18%  Similarity=0.240  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHHH
Q 044677           27 ERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIA  106 (250)
Q Consensus        27 ~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~v  106 (250)
                      ..+..|-.++..|..+.....++|..+++++.+=..    |..... ..+.+++  ..+....-|.+|...++.|-. .+
T Consensus        16 ~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~----p~~~~~-~~~~~~~--~~~~~~~~~~~y~~~~~~l~~-~~   87 (216)
T cd07599          16 KSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYD----PIVGPK-ESVGSHP--APESTLARLSRYVKALEELKK-EL   87 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CcCCCC-cCcCCCC--CcHHHHHHHHHHHHHHHHHHH-HH
Confidence            356788889999999999999999999887766443    432221 1111111  134577889999999988843 33


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhhh-hccccccccccccccchHHHHHHHHHH
Q 044677          107 RSAIGNFAALINTIMHHQEEEM-KLKERCEETKKELSRKTRQFEDWYNKYIT-RRTQEELDADDTTLKDAVTERKFVVDV  184 (250)
Q Consensus       107 ~~AIk~f~~~v~~i~~~Q~eE~-~~k~k~e~~~Kelekk~~~l~~~~~k~~~-~~~~~~~~~~~~~~~~~~~ekk~~le~  184 (250)
                      ..-+..|-..|-    .-..+. .+=..+..+-+..++|.-.+++...++.. ....        ..  .-......|..
T Consensus        88 ~~~l~~i~~~V~----~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k--------~~--~~~kd~~kl~k  153 (216)
T cd07599          88 LEELEFFEERVI----LPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKK--------KE--LSLKDEKQLAK  153 (216)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--------CC--CChhHHHHHHH
Confidence            333333322111    111111 11112222334444555555555554322 1000        00  00223446777


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 044677          185 LKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDL  236 (250)
Q Consensus       185 ~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l  236 (250)
                      .+++++..++.|.        .-.+.|+.-||.+|....+|-..++.+|=-+
T Consensus       154 ae~~l~~a~~~y~--------~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~  197 (216)
T cd07599         154 LERKLEEAKEEYE--------ALNELLKSELPKLLALADEFLPPLFKSFYYI  197 (216)
T ss_pred             HHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888886        2345699999999999999999988876443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo

>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins

Probab=95.82  E-value=1.3  Score=39.46  Aligned_cols=158  Identities=16%  Similarity=0.167  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHH-
Q 044677           27 ERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEI-  105 (250)
Q Consensus        27 ~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~-  105 (250)
                      ..+..|..++..|..++....++|....++|.+    -+.|+.+.              ....+|..|...++.|.+.. 
T Consensus        25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~----lY~p~~~~--------------~~~~~~~~y~~~v~~l~~~~~   86 (224)
T cd07591          25 KASTKLQKEAKGYLDSLRALTSSQARIAETISS----FYGDAGDK--------------DGAMLSQEYKQAVEELDAETV   86 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCc--------------cHhHHHHHHHHHHHHHHHHHH
Confidence            458889999999999999999999999999876    12343221              11468888888887764332 


Q ss_pred             ----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccchH
Q 044677          106 ----------ARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAV  175 (250)
Q Consensus       106 ----------v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~  175 (250)
                                |+.=|..|.+.+-.|-.              +-+..++|...+++...++-.-.        ....+++ 
T Consensus        87 ~el~~~~~~~V~~Pl~~~~~~~~~i~k--------------~IkKR~~KllDYD~~~~k~~kl~--------~K~~kd~-  143 (224)
T cd07591          87 KELDGPYRQTVLDPIGRFNSYFPEINE--------------AIKKRNHKLLDYDAARAKVRKLI--------DKPSEDP-  143 (224)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhhhHHH--------------HHHHHHhhHhhHHHHHHHHHHHH--------hcccCCH-
Confidence                      22233333333333321              22222333333343333321000        0011111 


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 044677          176 TERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLK  237 (250)
Q Consensus       176 ~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~  237 (250)
                          ..|......++..++.|..        -.+.|+.-||.++..-..|-..|++++-.+.
T Consensus       144 ----~kL~kae~el~~a~~~Ye~--------lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ  193 (224)
T cd07591         144 ----TKLPRAEKELDEAKEVYET--------LNDQLKTELPQLVDLRIPYLDPSFEAFVKIQ  193 (224)
T ss_pred             ----HHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                5577788888888888862        3456899999999988888887777765543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=93.62  E-value=5.4  Score=36.11  Aligned_cols=185  Identities=13%  Similarity=0.130  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHHHHHHHHHHHH-------
Q 044677           43 FCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAA-------  115 (250)
Q Consensus        43 F~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~v~~AIk~f~~-------  115 (250)
                      |..=-.--++|-..|..|-++.. |--    ...+.     ..|.|..|..|...|..+-  .+...=..|+.       
T Consensus        28 ~kERa~IEkeYakkL~~L~kKy~-~kk----~~~~~-----~~~~~t~~~aw~~~l~e~~--~~A~~H~~~~~~L~~~v~   95 (253)
T cd07676          28 VKERTEIELSYAKQLRNLSKKYQ-PKK----NSKEE-----EEYKYTSCRAFLMTLNEMN--DYAGQHEVISENLASQII   95 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hhc----ccccc-----ccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            33344567999999999999843 210    00011     2356788999997665432  11111122222       


Q ss_pred             -HHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHhhhhcc--------ccccccccccccchHHHHHHHHHHH
Q 044677          116 -LINTIMHHQEEEMK-LKERCEETKKELSRKTRQFEDWYNKYITRRT--------QEELDADDTTLKDAVTERKFVVDVL  185 (250)
Q Consensus       116 -~v~~i~~~Q~eE~~-~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~--------~~~~~~~~~~~~~~~~ekk~~le~~  185 (250)
                       -|..+......+++ .--....+.+++++....|+..-++|...--        ..-.+.+....+..+..=+..++..
T Consensus        96 ~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~  175 (253)
T cd07676          96 VELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIR  175 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHH
Confidence             22222222222222 1112344566666666666654444432100        0000011111223333344455555


Q ss_pred             HHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044677          186 KKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNI  239 (250)
Q Consensus       186 rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~  239 (250)
                      ..-.+.-+..|...+..++...-.-....||.||+.|-+|-..-+....++...
T Consensus       176 ~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~  229 (253)
T cd07676         176 HQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKT  229 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555677888999999988877767888999999988887776666555554443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=91.52  E-value=7.5  Score=32.64  Aligned_cols=60  Identities=13%  Similarity=0.104  Sum_probs=33.6

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 044677          179 KFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKN  238 (250)
Q Consensus       179 k~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~  238 (250)
                      ..+++..+...+.....+...+...-+.....|...|..++++...|...+.+.+++|..
T Consensus       167 ~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~  226 (229)
T PF03114_consen  167 EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQP  226 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444455566666666777777777777777666654

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=89.90  E-value=13  Score=32.78  Aligned_cols=60  Identities=17%  Similarity=0.219  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 044677          179 KFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKN  238 (250)
Q Consensus       179 k~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~  238 (250)
                      +..+.......+.-+..|..++..++..--.-....||.+|+.|..|=...+....++..
T Consensus       167 ~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~  226 (251)
T cd07653         167 KANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLL  226 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence            344444455556677888888887765545556789999999887777666666555443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like

Probab=89.80  E-value=15  Score=33.37  Aligned_cols=148  Identities=13%  Similarity=0.165  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhccC----------Ch---HHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhHHHH---
Q 044677           87 IQRLLLAWHDLLQKL----------PD---EIARSAIGNFAALINTIMHHQEEEMK-LKERCEETKKELSRKTRQFE---  149 (250)
Q Consensus        87 If~lC~~W~~~ld~l----------p~---k~v~~AIk~f~~~v~~i~~~Q~eE~~-~k~k~e~~~Kelekk~~~l~---  149 (250)
                      .|..|-.|..-|..+          .+   ..|+..|..++..+...-..+-.+.+ .+.-.+..-++++|=-+.++   
T Consensus        61 ~~t~~~s~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~ac  140 (252)
T cd07675          61 RFTSCLSFYNILNELNDYAGQREVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFEREC  140 (252)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344466665555544          22   23556667787777776666643322 22222333333333222222   


Q ss_pred             ----HHHHHhhhhccccccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHH
Q 044677          150 ----DWYNKYITRRTQEELDADDTTLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEI  225 (250)
Q Consensus       150 ----~~~~k~~~~~~~~~~~~~~~~~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~F  225 (250)
                          ...+++..    .  +.+....+..+..=+..++....-.|+-+..|...+..++...-.--..-||.||+.|-+|
T Consensus       141 ke~E~A~~k~~k----a--~~d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~l  214 (252)
T cd07675         141 REAEKAQQSYER----L--DNDTNATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEM  214 (252)
T ss_pred             HHHHHHHHHHHh----c--ccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence                22222110    0  1111222333433344555555556778889999998887666666677799999999888


Q ss_pred             HHHHHHHHHHHHHHh
Q 044677          226 SFACSGMYRDLKNIA  240 (250)
Q Consensus       226 s~~s~~~ye~l~~~~  240 (250)
                      -..-+.-..++...+
T Consensus       215 eE~Ri~~l~e~~~~~  229 (252)
T cd07675         215 DERRTVKLSECYRGF  229 (252)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777766666665544

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases

Probab=87.82  E-value=20  Score=32.14  Aligned_cols=202  Identities=10%  Similarity=0.101  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhc
Q 044677           24 HHHERTIQLWAVVQEWNSQFCKLI----DHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQ   99 (250)
Q Consensus        24 ~h~~at~qLe~el~~W~~sF~~wi----~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld   99 (250)
                      ..|.|.+.+-.-=..|-..+.+|+    ..-++|-+.|..=-+.   +   ..+   .+|.   ..|.+.+|..|...|+
T Consensus         5 ~~h~~l~~~~~~ei~lLe~i~~F~reRa~iE~EYA~~L~~L~kq---~---~k~---~~~~---~~~~s~~~~sW~~iL~   72 (237)
T cd07657           5 SGHEALLKRQDAELRLLETMKKYMAKRAKSDREYASTLGSLANQ---G---LKI---EAGD---DLQGSPISKSWKEIMD   72 (237)
T ss_pred             chHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h---CcC---CCcc---cCCcChHHHHHHHHHH
Confidence            345555555554445555555554    5678999988754433   1   111   1222   2346677888999888


Q ss_pred             cCChHH-------------HHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcc-cccc
Q 044677          100 KLPDEI-------------ARSAIGNFAALINTIMHHQEEEM-KLKERCEETKKELSRKTRQFEDWYNKYITRRT-QEEL  164 (250)
Q Consensus       100 ~lp~k~-------------v~~AIk~f~~~v~~i~~~Q~eE~-~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~-~~~~  164 (250)
                      .+-+-.             |.+.|..+......+..+..++. +.....+.+.+|++|-.+.++...+.+...+. -+..
T Consensus        73 ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a  152 (237)
T cd07657          73 STDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEA  152 (237)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            643221             23345555666666655544442 23334445555666555555433222111100 0000


Q ss_pred             ccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 044677          165 DADDTTLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLK  237 (250)
Q Consensus       165 ~~~~~~~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~  237 (250)
                      +.......-.+...+........++..-+..|.-++..++..--.-...-||.||+.|-++-......-.++.
T Consensus       153 ~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l  225 (237)
T cd07657         153 VVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKIL  225 (237)
T ss_pred             HhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000001112333334444444445566677777777777766677778899999999888777766655543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)

Probab=86.87  E-value=21  Score=31.48  Aligned_cols=181  Identities=12%  Similarity=0.140  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCC---h
Q 044677           27 ERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLP---D  103 (250)
Q Consensus        27 ~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp---~  103 (250)
                      +..-.||.-+...|..|..++...+.+-.+.-.--+-+..=-+.            ..|++-.-...+...+.++.   +
T Consensus        11 ~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~------------E~~~L~~~L~~lae~~~~i~d~~q   78 (211)
T cd07598          11 ERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADT------------ENPSLKQGLKNFAECLAALQDYRQ   78 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc------------cCHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999988876655532110000            13666666777777777666   2


Q ss_pred             -------HHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccc
Q 044677          104 -------EIARSAIGNFAALINTIM-------HHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDT  169 (250)
Q Consensus       104 -------k~v~~AIk~f~~~v~~i~-------~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~  169 (250)
                             ..|++-|+.|...+.+.-       ..|..+.+++.              .+++...+.     |.. .....
T Consensus        79 ~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~~--------------~leklk~~~-----~~d-~~~i~  138 (211)
T cd07598          79 AEVERLEAKVVQPLALYGTICKHARDDLKNTFTARNKELKQLK--------------QLEKLRQKN-----PSD-RQIIS  138 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhcC-----Cch-hhHHH
Confidence                   334555555555543322       12333333222              222221110     000 00000


Q ss_pred             cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 044677          170 TLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIAQHKNPS  246 (250)
Q Consensus       170 ~~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~~~~~~~  246 (250)
                      .....|..=+...+...+.+++|+.++.+.       -+..|+..|.....++..|....++.|..+.....+-|..
T Consensus       139 eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~-------k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~~~~~  208 (211)
T cd07598         139 QAESELQKASVDANRSTKELEEQMDNFEKQ-------KIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQNIDEE  208 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            111122223334555566677777777522       3567999999999999999999999999988877765543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1)

Probab=82.69  E-value=38  Score=30.88  Aligned_cols=62  Identities=11%  Similarity=0.203  Sum_probs=45.9

Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHH
Q 044677          173 DAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRD  235 (250)
Q Consensus       173 ~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~  235 (250)
                      ..+..-+..++.++..++.-+..|..++..+... -..--.-+|.||+.+-.|=..=+.-+.+
T Consensus       168 ~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~-~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~  229 (258)
T cd07680         168 EQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKT-TPQYMENMEQVFEQCQQFEEKRLVFLKE  229 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555678888888999999999999998766 5667788999999877665444444333

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog

>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins

Probab=81.89  E-value=37  Score=30.12  Aligned_cols=203  Identities=12%  Similarity=0.083  Sum_probs=103.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHh
Q 044677           19 KETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLL   98 (250)
Q Consensus        19 ~~tse~h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~l   98 (250)
                      +...+.|+.....|-.-+...+.+=..++++++.|+.+|..-=.-|+-+.+..          ++  -.|.-+-.=...|
T Consensus         8 ee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~----------i~--~~l~kF~~~l~El   75 (215)
T cd07604           8 EESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEED----------LG--AAFLKFSVFTKEL   75 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHH----------HH--HHHHHHHHHHHHH
Confidence            44556777777777777777778888888888888888887322222111100          00  1122222222333


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccchHH
Q 044677           99 QKLPDEIARSAIGNFAALINTIMHHQEEEM--KLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVT  176 (250)
Q Consensus        99 d~lp~k~v~~AIk~f~~~v~~i~~~Q~eE~--~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~  176 (250)
                      ..+-+.-+..+-..+..-+.+++.-+-..-  -.|+++|..++++|+....+++.-.+       +..+++...+.-...
T Consensus        76 ~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~-------~~~~~~~~r~e~~~~  148 (215)
T cd07604          76 AALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQ-------LAKEAGMIRTEITGA  148 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------hhhhhhhcchhhhhh
Confidence            333344444444444455555554444331  24556666666666665544432111       000000000000012


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044677          177 ERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIA  240 (250)
Q Consensus       177 ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~  240 (250)
                      +=...|+.-|+......-.|.-.+..+...---.+-..|...|+|...|-....++.+++.-..
T Consensus       149 e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~  212 (215)
T cd07604         149 EIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI  212 (215)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3344566666666666555554444444333333444566777777777777777777765443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=81.15  E-value=39  Score=29.98  Aligned_cols=179  Identities=15%  Similarity=0.223  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccc--------ccC------CCCCCCCCCCChHHHHHHH
Q 044677           29 TIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPI-ESS--------LRE------KVSSPPRIQTPPIQRLLLA   93 (250)
Q Consensus        29 t~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~-e~~--------~~~------~~~sP~r~~aPpIf~lC~~   93 (250)
                      -.+||.++..++....+.+.+=..||+    ||.+-. |. +..        ++.      .-+.|.-. --.....|.+
T Consensus         9 f~~le~~~d~~~~~~~~l~~~~~~y~~----~l~k~~-~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~-~G~aL~~~G~   82 (215)
T cd07593           9 FLELEKEIELRKEGMERLHRSTEAYVE----YLSKKK-PLLDDKDKCLPVEALGLVMINHGEEFPQDSE-YGSCLSKLGR   82 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccC-ccccccccCChHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHH
Confidence            568999999999999999999999998    555422 21 100        000      00111100 0123345555


Q ss_pred             HHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcccccccccccccc
Q 044677           94 WHDLLQKLPDEIARSAIGNFAALINTIMHHQEEE-MKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLK  172 (250)
Q Consensus        94 W~~~ld~lp~k~v~~AIk~f~~~v~~i~~~Q~eE-~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~  172 (250)
                      =...|..+-+.=+..+-.+|...|+.... +..+ ++.|+|++.       +...++..-.++-..+..           
T Consensus        83 a~~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKkLe~-------rRLdyD~~ksk~~kak~~-----------  143 (215)
T cd07593          83 AHCKIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKKLES-------RRLAYDAALTKSQKAKKE-----------  143 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccc-----------
Confidence            55666666556566667777777776654 3333 334444444       444444333332111100           


Q ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhh-------chHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044677          173 DAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRN-------HLPELFKAMSEISFACSGMYRDLKNIAQH  242 (250)
Q Consensus       173 ~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~-------gL~~vF~aL~~Fs~~s~~~ye~l~~~~~~  242 (250)
                      +         ..++..++....+|..+...+... +-++..       .|..+.+|-.+|=..|.+..++|...+-.
T Consensus       144 ~---------~~~eeElr~Ae~kfees~E~a~~~-M~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~~~  210 (215)
T cd07593         144 D---------SRLEEELRRAKAKYEESSEDVEAR-MVAIKESEADQYRDLTDLLDAELDYHQQSLDVLREVRQSWPS  210 (215)
T ss_pred             c---------hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            0         112333444455555555555422 223333       47777778888888889998888877644

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	250
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 52/300 (17%), Positives = 91/300 (30%), Gaps = 95/300 (31%)

Query: 9   LKSLDISQS--PKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLI 66
           LK LD      P+E    +  R   +   +++  + +           K +N   KL  I
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--------DNWKHVNCD-KLTTI 358

Query: 67  PIESSLREKVSSPPRIQT--------P-----PIQRLLLAWHDLLQKLPDEIA-----RS 108
            IESSL   V  P   +         P     P   L L W D+++     +       S
Sbjct: 359 -IESSL--NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 109 AI-GNFAALINTIMHHQEEEMKLKERCEETKKELSRK-------TRQF---------ED- 150
            +         +I       ++LK + E  +  L R         + F          D 
Sbjct: 416 LVEKQPKESTISIPSIY---LELKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 151 -WYNKYI------TRRTQEE-------LDAD--DTTLKD---AVTERKFVVDVL------ 185
            +Y+ +I          +         LD    +  ++    A      +++ L      
Sbjct: 472 YFYS-HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530

Query: 186 KKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIA-QHKN 244
           K  + + +  Y+R   A+    L  L      L  +           Y DL  IA   ++
Sbjct: 531 KPYICDNDPKYERLVNAI----LDFLPKIEENLICS----------KYTDLLRIALMAED 576

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	92.73
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	92.04
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	92.03
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	91.73
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	88.96
4a3a_A	243	Amphiphysin; structural genomics, invagination, kn	87.53
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	85.35
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	85.17
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	83.63
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	83.47
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	81.46

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=92.73  E-value=5  Score=35.52  Aligned_cols=57  Identities=11%  Similarity=0.132  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHH
Q 044677          175 VTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGM  232 (250)
Q Consensus       175 ~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~  232 (250)
                      +...+..++.++.+++.-...|..+|..+... -..+..-+|.+|+.|..+=..-+..
T Consensus       185 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~-~~~~~~~~~~~~~~~Q~le~~Rl~~  241 (337)
T 2x3v_A          185 QKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKT-TPQYMEGMEQVFEQCQQFEEKRLVF  241 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445567777777888888999999988877 6778888999998776554443333

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=92.04  E-value=5.5  Score=34.37  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHH
Q 044677          175 VTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSE  224 (250)
Q Consensus       175 ~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~  224 (250)
                      +...+..++.....++.-...|..++..++..--.-...-+|.+|+.|..
T Consensus       167 ~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ~  216 (301)
T 2efk_A          167 VEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQD  216 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345556666666777778888888877665445566777887775543

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=92.03  E-value=8.2  Score=36.37  Aligned_cols=60  Identities=8%  Similarity=0.237  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHH
Q 044677          175 VTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRD  235 (250)
Q Consensus       175 ~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~  235 (250)
                      +...+..++..+..++.-...|..++..+.... .-...-+|.+|+.|..+-...+....+
T Consensus       187 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~-~~y~~~~~~~~~~lQ~lEeeRi~~lK~  246 (486)
T 3haj_A          187 LKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGT-PQYMENMEQVFEQCQQFEEKRLRFFRE  246 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556777777778888899999999998775 668899999999887776666665543

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=91.73  E-value=5.9  Score=34.10  Aligned_cols=171  Identities=11%  Similarity=0.130  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH----
Q 044677           43 FCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALIN----  118 (250)
Q Consensus        43 F~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~v~~AIk~f~~~v~----  118 (250)
                      |..=...-++|.+.|..|-++.. +....         +...|..+.+...|...++.+  +.+...-..|+..+.    
T Consensus        37 ~~eRa~iE~eYak~L~kLa~~~~-~~~~~---------~~~~~~~~t~~~aw~~~~~~~--e~~a~~h~~~a~~l~~~v~  104 (305)
T 2efl_A           37 VKERTEIELSYAKQLRNLSKKYQ-PKKNS---------KEEEEYKYTSCKAFISNLNEM--NDYAGQHEVISENMASQII  104 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTS-CC----------------CTTSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-ccccc---------CccccccccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            44556678899999999988753 11000         001244667888998777653  333333344444432    


Q ss_pred             ----HHHHhhHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHhhhhcc----------ccccccccccccchHHHHHH
Q 044677          119 ----TIMHHQEEEMKLKERC----EETKKELSRKTRQFEDWYNKYITRRT----------QEELDADDTTLKDAVTERKF  180 (250)
Q Consensus       119 ----~i~~~Q~eE~~~k~k~----e~~~Kelekk~~~l~~~~~k~~~~~~----------~~~~~~~~~~~~~~~~ekk~  180 (250)
                          .+...+..   .++++    ..+.|++.+....++..-.+|...-.          -...+  .......+...+.
T Consensus       105 ~~l~~~~~~~~~---~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~--~~~s~~~~eK~~~  179 (305)
T 2efl_A          105 VDLARYVQELKQ---ERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDAD--INVTKADVEKARQ  179 (305)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccHhHHHHHHH
Confidence                22221111   11211    12233333333333322222221100          00000  0011112333344


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHH
Q 044677          181 VVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACS  230 (250)
Q Consensus       181 ~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~  230 (250)
                      .++....+++.-...|..+|..+...--.....-+|.+|+.|..+=...+
T Consensus       180 k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r~  229 (305)
T 2efl_A          180 QAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRI  229 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566777778898888887765456677888888876554443333

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=88.96  E-value=9.7  Score=32.21  Aligned_cols=34  Identities=9%  Similarity=0.115  Sum_probs=21.3

Q ss_pred             hcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044677          206 KSLTSLRNHLPELFKAMSEISFACSGMYRDLKNI  239 (250)
Q Consensus       206 ~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~  239 (250)
                      .....+...|..++.+-..|...+.+.|++|...
T Consensus       212 ~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~  245 (251)
T 2fic_A          212 SRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDV  245 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455666666666667777777777776544

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=85.35  E-value=17  Score=31.10  Aligned_cols=92  Identities=13%  Similarity=0.012  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhhhhcccccccccccccc-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhh
Q 044677          134 CEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLK-DAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLR  212 (250)
Q Consensus       134 ~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~-~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq  212 (250)
                      +..+.|.|++....++....||..-...        .+. ..+.|-...|...|+.-+...-.|.-.+..++..---.+=
T Consensus       126 ~ke~kk~fdk~~~~yd~al~k~~~~~k~--------k~~e~~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~l  197 (265)
T 2q12_A          126 ILTLKEVFQIASNDHDAAINRYSRLSKK--------RENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALL  197 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCC--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888888888777776533210        011 1123444556666665555444444333333321111122


Q ss_pred             hchHHHHHHHHHHHHHHHHHH
Q 044677          213 NHLPELFKAMSEISFACSGMY  233 (250)
Q Consensus       213 ~gL~~vF~aL~~Fs~~s~~~y  233 (250)
                      ..|-..+++...|-..+.+++
T Consensus       198 e~l~~~~~a~~~ff~~g~e~~  218 (265)
T 2q12_A          198 EPLLGYMQAQISFFKMGSENL  218 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            223334444444444444444

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=85.17  E-value=22  Score=32.31  Aligned_cols=23  Identities=13%  Similarity=0.101  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhhh
Q 044677          135 EETKKELSRKTRQFEDWYNKYIT  157 (250)
Q Consensus       135 e~~~Kelekk~~~l~~~~~k~~~  157 (250)
                      ..+.|.||+..+.++.+..||..
T Consensus       150 ke~kK~Fek~~~~Yd~~l~Ky~~  172 (407)
T 4h8s_A          150 STLKDLFGLASNEHDLSMAKYSR  172 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            35677788888888887777754

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=83.63  E-value=20  Score=30.74  Aligned_cols=176  Identities=16%  Similarity=0.202  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Q 044677           43 FCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIMH  122 (250)
Q Consensus        43 F~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~v~~AIk~f~~~v~~i~~  122 (250)
                      |..=...-++|.+.|..|-+++......             .|+...++..|...+..  .+.+...-..|+..|..-+.
T Consensus        31 ~keRa~iE~~Yak~L~kL~~~~~~~~~~-------------~~~~gs~~~aw~~~~~~--~e~~a~~h~~~a~~l~~~v~   95 (290)
T 3i2w_A           31 IQERADIEKGYAKSLRTWSKKWGELIEK-------------GPEYGTTEAAWKGVLTE--SERISDVHMKIKDNLCNDVN   95 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------SSCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcC-------------CCCCchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            3444567899999999999875311100             12335678889777653  23344455555555533221


Q ss_pred             hhHH----HH--------HHHHHH----HHHHHHHHHHhHHHHHHHHHhhhhccccccccc---cccccc-hHHHH----
Q 044677          123 HQEE----EM--------KLKERC----EETKKELSRKTRQFEDWYNKYITRRTQEELDAD---DTTLKD-AVTER----  178 (250)
Q Consensus       123 ~Q~e----E~--------~~k~k~----e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~---~~~~~~-~~~ek----  178 (250)
                      ..-.    +.        +.+++.    ..+.+++......++..-.+|...-. +...+.   .....+ .+..|    
T Consensus        96 ~~l~~~~~e~~~k~~~~~kerK~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~-e~~~a~~~~~~a~~~~~~s~k~~~K  174 (290)
T 3i2w_A           96 SQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACK-TERSATNQERNANADSSLSPDQVKK  174 (290)
T ss_dssp             HHHHHHHHHHCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTSCC-------------------
T ss_pred             HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcCCCCCCHHHHHH
Confidence            1111    11        112222    23344444444555544444432210 000000   000000 01111    


Q ss_pred             -HHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHH
Q 044677          179 -KFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRD  235 (250)
Q Consensus       179 -k~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~  235 (250)
                       +..++.....++.-...|..++..+...... ....+|.+|+.|-++=...+....+
T Consensus       175 ~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~-~~~~~p~~~~~~Q~lee~Ri~~lk~  231 (290)
T 3i2w_A          175 MHDRVQKTKDQVQKCREKYEQAIAEITKYNSV-YIEDMTSVFEKCQTFEKTRLQFFKE  231 (290)
T ss_dssp             -CTTSSTTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1123333445677788899999998888665 8999999998776666555555554

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=83.47  E-value=24  Score=31.36  Aligned_cols=58  Identities=7%  Similarity=0.202  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHH
Q 044677          175 VTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMY  233 (250)
Q Consensus       175 ~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~y  233 (250)
                      +..-+..++.++..++.-...|..+|..+.... ..+..-+|.+|+.|..+=..-+...
T Consensus       194 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~-~~~~~~~~~~~~~~Q~lee~Rl~~l  251 (350)
T 3aco_A          194 LKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGT-PQYMENMEQVFEQCQQFEEKRLRFF  251 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455667777777788889999999888764 5677889999887766655444443

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=81.46  E-value=32  Score=31.50  Aligned_cols=168  Identities=12%  Similarity=0.133  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--
Q 044677           43 FCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTI--  120 (250)
Q Consensus        43 F~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~v~~AIk~f~~~v~~i--  120 (250)
                      |..=...-++|-+.|..|-++...-..        +    +..++..++..|...+..+  +.+......|+..+..-  
T Consensus        35 ~reRA~IE~eYAk~L~kLakk~~~k~~--------~----~~~~~~tl~~aW~~ll~et--e~~a~~H~~lae~L~~~v~  100 (406)
T 4dyl_A           35 MAQRVKSDREYAGLLHHMSLQDSGGQS--------R----AISPDSPISQSWAEITSQT--EGLSRLLRQHAEDLNSGPL  100 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------------------------CCSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccc--------c----CCCCCChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            344457789999999999887431000        0    0112335668887776643  33333333333332221  


Q ss_pred             ---HHhhHHHHHHHHHHH----HHHHHHHHHh-HHHHHHHHHhhhhcc-ccc-c-ccccccccchHHHHHHHHHHHHHhh
Q 044677          121 ---MHHQEEEMKLKERCE----ETKKELSRKT-RQFEDWYNKYITRRT-QEE-L-DADDTTLKDAVTERKFVVDVLKKRL  189 (250)
Q Consensus       121 ---~~~Q~eE~~~k~k~e----~~~Kelekk~-~~l~~~~~k~~~~~~-~~~-~-~~~~~~~~~~~~ekk~~le~~rkrl  189 (250)
                         -.-..+-.+.+++++    .+.+++.+.+ ..++..-.+|...-. .+. . ..........+..-+..++.....+
T Consensus       101 ~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~k~~k~~~~~  180 (406)
T 4dyl_A          101 SKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKL  180 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence               111111122333332    2444444444 444433333322100 000 0 0000000011233344555555666


Q ss_pred             HHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHH
Q 044677          190 EEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSE  224 (250)
Q Consensus       190 e~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~  224 (250)
                      +.-+..|..++..++...-.-....||.||+.+-.
T Consensus       181 ~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~  215 (406)
T 4dyl_A          181 FAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQD  215 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            77777898888887766666677889999886444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	250
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	95.47
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	94.15
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	93.82
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	91.82
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	91.06

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.47  E-value=0.39  Score=37.25  Aligned_cols=194  Identities=11%  Similarity=0.080  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChH
Q 044677           25 HHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDE  104 (250)
Q Consensus        25 h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k  104 (250)
                      +.+....++..+...+.....|+++.+.+..+...+-.-.....+ +.+     +.-.....++..|......+...=+.
T Consensus        17 ~~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (217)
T d1urua_          17 HLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYE-PQW-----SGYDALQAQTGASESLWADFAHKLGD   90 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-TTS-----TTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCc-----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777777788888888888888887777776653211101 000     00000112333343333322221223


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccchHHHHHHHHHH
Q 044677          105 IARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVTERKFVVDV  184 (250)
Q Consensus       105 ~v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~ekk~~le~  184 (250)
                      .|++.++.|...+..+.       ...++.+....|+++-...++....+....     .+.      .-+.+-..+++.
T Consensus        91 ~v~~pL~~~~~~~~~~~-------~~~kkr~~~~~dyd~~~~~l~k~~~k~~~~-----~~~------~~l~~~e~~~~~  152 (217)
T d1urua_          91 QVLIPLNTYTGQFPEMK-------KKVEKRNRKLIDYDGQRHSFQNLQANANKR-----KDD------VKLTKGREQLEE  152 (217)
T ss_dssp             TTHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTTCBT-----TBC------CTTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cch------hhhHHHHHHHHH
Confidence            56666666665443332       122233455566666655555543331100     000      001111223444


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044677          185 LKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIAQH  242 (250)
Q Consensus       185 ~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~~~  242 (250)
                      .++..+.-...+..-+...-.....-+...|..++.+...|-..+.+.|++|.....+
T Consensus       153 a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~~  210 (217)
T d1urua_         153 ARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDK  210 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444445556677888899999999999999999999998876643

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=1.1  Score=35.93  Aligned_cols=184  Identities=13%  Similarity=0.111  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Q 044677           37 QEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAAL  116 (250)
Q Consensus        37 ~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~v~~AIk~f~~~  116 (250)
                      .....-|..=....+.|.+.|..+-..........          ...+....++..|...++.+  .........|+..
T Consensus        26 ~~~~~~~~eRa~iE~eYak~L~kl~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~a~~h~~~a~~   93 (288)
T d2efla1          26 EKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSK----------EEEEYKYTSCKAFISNLNEM--NDYAGQHEVISEN   93 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----------------CTTSHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----------ccccccCcHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            34455667777889999999999987643211100          01234457788998887643  3344455555555


Q ss_pred             HHHHHHhhHH----H-HHHHH----HHHHHHHHHHHHhHHHHHHHHHhhhhcc-----c---cccccccccccchHHHHH
Q 044677          117 INTIMHHQEE----E-MKLKE----RCEETKKELSRKTRQFEDWYNKYITRRT-----Q---EELDADDTTLKDAVTERK  179 (250)
Q Consensus       117 v~~i~~~Q~e----E-~~~k~----k~e~~~Kelekk~~~l~~~~~k~~~~~~-----~---~~~~~~~~~~~~~~~ekk  179 (250)
                      +..-+...-.    + .+.++    -...+.+++.+....+.+...+|.....     .   .....+.......+...+
T Consensus        94 l~~~i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~  173 (288)
T d2efla1          94 MASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKAR  173 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHH
Confidence            5332221111    1 11111    1223333344444444433333321100     0   000000011112334445


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHH
Q 044677          180 FVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGM  232 (250)
Q Consensus       180 ~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~  232 (250)
                      ..++..+..++.-...|...+..++..--.-....||.+|+.|..|=......
T Consensus       174 ~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~~q~~e~~r~~~  226 (288)
T d2efla1         174 QQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVR  226 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666677777778877777665544455677888887775554443333

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.98  Score=34.30  Aligned_cols=178  Identities=13%  Similarity=0.115  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHHHH
Q 044677           28 RTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIAR  107 (250)
Q Consensus        28 at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~v~  107 (250)
                      .+..|...+..+..++...+.+|..+-.+|+.+-...  |            .   .-..+.-+..=...++..- ....
T Consensus        21 ~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~--~------------~---~~~~l~~~~~~~~~~~~~~-~~~~   82 (200)
T d1i4da_          21 KYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKS--P------------E---LQEEFGYNAETQKLLCKNG-ETLL   82 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--G------------G---GHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--C------------c---hHHHHHHHHHHHHHHHHHH-HHHH
Confidence            3556777777777888888888888888887653210  1            0   0012222222233333332 2345


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccchHHHHHHHHHHHH
Q 044677          108 SAIGNFAALINTIMHHQEEEMK-LKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVTERKFVVDVLK  186 (250)
Q Consensus       108 ~AIk~f~~~v~~i~~~Q~eE~~-~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~ekk~~le~~r  186 (250)
                      ..+..++..+..++...-.+.+ .++|.+....|+++....+...-.+      +..     .....-+.+=..+++..+
T Consensus        83 ~~~~~~~~~l~~~~~~~~~~~~~~~kk~~~~~~dyd~~~~k~~~~~~~------~~~-----~~~~~kl~~ae~~~~~a~  151 (200)
T d1i4da_          83 GAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLG------PRD-----AGTRGRLESAQATFQAHR  151 (200)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc------ccc-----cchhhhHHHHHHHHHHHH
Confidence            5667777777777666554433 3334444444444444433322111      000     000001111122333334


Q ss_pred             HhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHH
Q 044677          187 KRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYR  234 (250)
Q Consensus       187 krle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye  234 (250)
                      .+.+.-...+..-+......-...+...|-.+++++..|-..|.++++
T Consensus       152 ~~fe~~~~~~~~~l~~l~~~r~~~~~~~l~~~~~~~~~f~~~~~~~le  199 (200)
T d1i4da_         152 DKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLE  199 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            443333333333333334444455666777777777777777766654

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=2.6  Score=33.93  Aligned_cols=39  Identities=10%  Similarity=-0.049  Sum_probs=26.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044677           22 SEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSW   60 (250)
Q Consensus        22 se~h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~W   60 (250)
                      |..=|.....+|..+........++++.-+.|+.+++.-
T Consensus        11 SP~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~   49 (268)
T d2elba1          11 SPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNEL   49 (268)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444566777777777777777777777766666666543

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=2.9  Score=33.08  Aligned_cols=179  Identities=17%  Similarity=0.175  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q 044677           40 NSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINT  119 (250)
Q Consensus        40 ~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~v~~AIk~f~~~v~~  119 (250)
                      ..-|..=...-++|.+.|-..-.... +.. ......        -.-..++..|...++.  ..........|+..+..
T Consensus        20 ~~~~~eRa~iE~~Yak~L~kL~~~~~-~~~-~~~~~~--------~~~~s~~~~~~~~~~~--~~~~a~~~~~~~~~l~~   87 (279)
T d2efka1          20 VKFVKERTEVEQAYAKQLRSLVKKYL-PKR-PAKDDP--------ESKFSQQQSFVQILQE--VNDFAGQRELVAENLSV   87 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CC----------------CTTSHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-hhc-cccccC--------cccchHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            34566777888999999988655432 110 000000        1122677789887775  33344555555555543


Q ss_pred             HHH--------hhHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHhhhhcc-----c---cccccccccccchHHHHHHHH
Q 044677          120 IMH--------HQEEEMK-LKERCEETKKELSRKTRQFEDWYNKYITRRT-----Q---EELDADDTTLKDAVTERKFVV  182 (250)
Q Consensus       120 i~~--------~Q~eE~~-~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~-----~---~~~~~~~~~~~~~~~ekk~~l  182 (250)
                      -+.        .+....+ ...-+..+.+++.+....+.+...+|.....     .   .............+...+...
T Consensus        88 ~i~~~l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~~~  167 (279)
T d2efka1          88 RVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQA  167 (279)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            221        1111111 1111223334444444333333222221100     0   000000001111223333344


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHH
Q 044677          183 DVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACS  230 (250)
Q Consensus       183 e~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~  230 (250)
                      ......++.-...|...+..++...-.-...-+|.+|+.|..+-...+
T Consensus       168 ~~~~~~~~~~~~~y~~~l~~~n~~~~~~~~~~~p~~l~~lq~~e~~r~  215 (279)
T d2efka1         168 HLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRA  215 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555556666666655544333345667777776655544433