Citrus Sinensis ID: 044684

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-----

MPTPPPPDPVTFLEPVRPKYPHHLNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVVGRIPDCLRGVYVRNGANPMFVPSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVSGMNLEAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSGQVL

ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEccccccccccccccccccccEEEEEEccccEEEEEEEEEccHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccccccccEEEEEEEccEEEEEEEcccccEEEcccccccccccccccccccccccccccEEccccccEEEEEEEccccccEEEEEEEEcccccEEEEEEEEcccccEEEcccccccEEEEEcccccccHHHHHcccccEEEccccccEEEEEEcccccccccEEEEcccEEEEEEEEEEEcccccEEEEEEEEccccccccccccccccccccEEEEEEEEcccccEEEEEEEccccccccccccccccccccEEEEEEEcccccccEEEEEEcccccEEEEEccccccccccEEEEcccccccccccccEEEEEEEEEccccEEEEEEEEcccccEEEEEEcccccccccccccccccccccccc

cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccccccccccccccccEEEEcccHcccEEEEccccccccccccccccccccEEEEEEEccccEEEEEEEEEEcHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccccEEEEEEEEcccEEEEEcccccEEEEEccccccEEccEEccccccccccccccccccccccEEEEEEccccccEEEEEEEEccccccEccccccccccccEEEcEEEcccEEEEccccEEEcHHHHHcccccEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEcccccccEEEEEEEEEccccccccHHHHHHHHcccccEEEEEEEcccccEEEcccccccccccccEcccccccccEEEEEEEEcccccccEEEEEEccccEEEEEEEcccccccccEEEccccccccccHccccEEEEEEEEccccccEEEEEEcccccEEEEEEccccccccccEEEEcHHHHHHHcc

mptppppdpvtflepvrpkyphhlnpLQKLAASALDKIEDSLIGFFekgkslpktvdptvqisgnfapvqecpvhhglqvvgripdclrgvyvrnganpmfvpsgghhlfdgdgMIHAVTLGhanqasyscrytqtsRLVQeakygkpvfpkpigelhghlgLARLGLFMARAgaglvdgsrgmgvaNAGLVYFHGSllamseddlpyrvkikpdgdletigrfsfddqldcpmiahpkvdpvtsdlhalsynvvrkpylkyfrfggsndgkksrdvdvtldqptmihdfaitencviipdhQVVFKLSemirggspvifdknktsrfgvlskndadesgiqwidvpncfcFHLWNAweennddgdrnvvvigscmdppdsvfnehqdpvRSELSEIRLNLKTGESTRRVVVSGMNLEAGQVNRALLGQKTRYVYLAiadpwpkcsgiakvdlgtgevtkfmygahrfggepmfvpqnsknvgsgredegfimGFVRDERREESEMVIVKASSMEQvasvklprrvpygfhgtfiseqelsgqvl

mptppppdpvTFLEPVRPKYPHHLNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVVGRIPDCLRGVYVRNGANPMFVPSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKPYLKYFrfggsndgkksrDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSpvifdknktsrFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPDSVFNEHQDPVRSELSEIrlnlktgestrrvvvsgmnleagqvnraLLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSknvgsgredegfIMGFVRDERREESEMVIVkassmeqvasvklpRRVPYGFHGtfiseqelsgqvl

MptppppdpVTFLEPVRPKYPHHLNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVVGRIPDCLRGVYVRNGANPMFVPSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLVQEAKYGKPVFPKPIgelhghlglarlglFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVSGMNLEAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSGQVL

***********************LNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVVGRIPDCLRGVYVRNGANPMFVPSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKPYLKYFRFGGSN******DVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCM*******************************RRVVVSGMNLEAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFV***************FIMGFV**********************SVKLPRRVPYGFHGTFI**********

********************************SALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVVGRIPDCLRGVYVRNGANPMFVPSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVSGMNLEAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSK****GREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSG*V*

********************PHHLNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVVGRIPDCLRGVYVRNGANPMFVPSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVSGMNLEAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSG***

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		545	2.2.26 [Sep-21-2011]
Q9LRM7		577	9-cis-epoxycarotenoid dio	yes	no	0.974	0.920	0.666	0.0
Q9M9F5		657	9-cis-epoxycarotenoid dio	no	no	0.977	0.811	0.615	0.0
Q9M6E8		615	9-cis-epoxycarotenoid dio	N/A	no	0.952	0.843	0.603	0.0
Q9LRR7		599	9-cis-epoxycarotenoid dio	no	no	0.937	0.853	0.631	0.0
O24592		604	9-cis-epoxycarotenoid dio	N/A	no	0.948	0.855	0.615	0.0
Q9C6Z1		589	Probable 9-cis-epoxycarot	no	no	0.970	0.898	0.597	0.0
O49505		583	9-cis-epoxycarotenoid dio	no	no	0.946	0.885	0.589	1e-177
O49675		595	Probable carotenoid cleav	no	no	0.933	0.855	0.402	1e-100
Q84KG5		546	Carotenoid 9,10(9',10')-c	N/A	no	0.913	0.912	0.399	2e-95
Q94IR2		543	Carotenoid 9,10(9',10')-c	N/A	no	0.913	0.917	0.377	3e-93

>sp\|Q9LRM7\|NCED6_ARATH 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1	Back alignment and function desciption

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/543 (66%), Positives = 440/543 (81%), Gaps = 12/543 (2%)

Query: 3   TPPPPDPVTFLEPVRPKYPHHLNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQI 62
           T P P PV     ++P YP+ LN LQKLAA+ LDKIE S++   E+ + LPK  DP VQ+
Sbjct: 47  TSPVPSPVK----LKPTYPN-LNLLQKLAATMLDKIESSIVIPMEQNRPLPKPTDPAVQL 101

Query: 63  SGNFAPVQECPVHHGLQVVGRIPDCLRGVYVRNGANPMFVPSGGHHLFDGDGMIHAVTLG 122
           SGNFAPV ECPV +GL+VVG+IP CL+GVY+RNGANPMF P  GHHLFDGDGMIHAV++G
Sbjct: 102 SGNFAPVNECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIG 161

Query: 123 HANQASYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSR 182
             NQ SYSCRYT+T+RLVQE   G+ VFPKPIGELHGH GLARL LF ARAG GLVDG+R
Sbjct: 162 FDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTR 221

Query: 183 GMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDP 242
           GMGVANAG+V+F+G LLAMSEDDLPY+VKI   GDLETIGRF FDDQ+D  +IAHPKVD 
Sbjct: 222 GMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQIDSSVIAHPKVDA 281

Query: 243 VTSDLHALSYNVVRKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDH 302
            T DLH LSYNV++KP+L+Y +F     GKK+RDV++TL +PTMIHDFAITEN V+IPD 
Sbjct: 282 TTGDLHTLSYNVLKKPHLRYLKFNTC--GKKTRDVEITLPEPTMIHDFAITENFVVIPDQ 339

Query: 303 QVVFKLSEMIRGGSPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENN 362
           Q+VFKLSEMIRGGSPVI+ K K +RFGVLSK D   S I W+DVP+CFCFHLWNAWEE  
Sbjct: 340 QMVFKLSEMIRGGSPVIYVKEKMARFGVLSKQDLTGSDINWVDVPDCFCFHLWNAWEERT 399

Query: 363 DDGDRNVVVIGSCMDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVSGMNLEAGQV 422
           ++GD  +VVIGSCM PPD++F+E  +P R ELSEIRLN++T ES R+V+V+G+NLEAG +
Sbjct: 400 EEGDPVIVVIGSCMSPPDTIFSESGEPTRVELSEIRLNMRTKESNRKVIVTGVNLEAGHI 459

Query: 423 NRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNV 482
           NR+ +G+K+++VY+AIADPWPKCSGIAKVD+  G V++F YG  RFGGEP FVP+     
Sbjct: 460 NRSYVGRKSQFVYIAIADPWPKCSGIAKVDIQNGTVSEFNYGPSRFGGEPCFVPE----- 514

Query: 483 GSGREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSG 542
           G G ED+G++MGFVRDE ++ESE V+V A+ M+QVA+V+LP RVPYGFHGTF+SE +L  
Sbjct: 515 GEGEEDKGYVMGFVRDEEKDESEFVVVDATDMKQVAAVRLPERVPYGFHGTFVSENQLKE 574

Query: 543 QVL 545
           QV 
Sbjct: 575 QVF 577

Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids. Contributes probably to abscisic acid synthesis for the induction of seed dormancy.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 5EC: 1

>sp\|Q9M9F5\|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1	Back alignment and function description

>sp\|Q9M6E8\|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1	Back alignment and function description

>sp\|Q9LRR7\|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1	Back alignment and function description

>sp\|O24592\|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2	Back alignment and function description

>sp\|Q9C6Z1\|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1	Back alignment and function description

>sp\|O49505\|NCED2_ARATH 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1	Back alignment and function description

>sp\|O49675\|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1	Back alignment and function description

>sp\|Q84KG5\|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1	Back alignment and function description

>sp\|Q94IR2\|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		545
255554198		618	9-cis-epoxycarotenoid dioxygenase, putat	0.983	0.867	0.734	0.0
408384462		571	9-cis-epoxycarotenoid dioxygenase 3 [Fra	0.992	0.947	0.705	0.0
449465258		568	PREDICTED: 9-cis-epoxycarotenoid dioxyge	0.976	0.936	0.677	0.0
297835456		577	nine-cis-epoxycarotenoid dioxygenase 6 [	0.970	0.916	0.674	0.0
225433416		575	PREDICTED: 9-cis-epoxycarotenoid dioxyge	0.979	0.928	0.686	0.0
15230080		577	9-cis-epoxycarotenoid dioxygenase NCED6	0.974	0.920	0.666	0.0
294471310		582	9-cis-epoxycarotenoid dioxygenase [Camel	0.968	0.907	0.688	0.0
297741917		554	unnamed protein product [Vitis vinifera]	0.941	0.925	0.658	0.0
375127620		578	9-cis-epoxycarotenoid dioxygenase 4 [Lac	0.974	0.918	0.640	0.0
375127622		578	9-cis-epoxycarotenoid dioxygenase 4 [Lac	0.974	0.918	0.640	0.0

>gi\|255554198\|ref\|XP_002518139.1\| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis] gi\|223542735\|gb\|EEF44272.1\| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  844 bits (2181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/554 (73%), Positives = 463/554 (83%), Gaps = 18/554 (3%)

Query: 7   PDPVTFLEPVRPKYPHHLNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNF 66
           P P TF  P    +P  LNPLQKLAA ALDKIE SL+  FE+   LP+T+DPTVQISGNF
Sbjct: 67  PGP-TFTTPRETDHPIALNPLQKLAALALDKIESSLLVPFERNHLLPRTIDPTVQISGNF 125

Query: 67  APVQECPVHHGLQVVGRIPDCLRGVYVRNGANPMFVPSGGHHLFDGDGMIHAVTLGHANQ 126
           APV ECPVHHGL+VVG IP+ LRGVY+RNGANP++ P+GGHHLFDGDGM+HAVTLG+ N+
Sbjct: 126 APVLECPVHHGLEVVGHIPNSLRGVYLRNGANPVYAPTGGHHLFDGDGMVHAVTLGYENR 185

Query: 127 ASYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSRGMGV 186
           ASYSCR+T+TSRL QEA  G+ VFPKPIGELHGHLG ARL +FM RAG GLVDGSRG GV
Sbjct: 186 ASYSCRFTRTSRLEQEAALGRSVFPKPIGELHGHLGFARLLIFMVRAGIGLVDGSRGTGV 245

Query: 187 ANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSD 246
           ANAGLVYF+G LLAMSEDDLPY VKIK DGDLETI RFSFDDQLDCPMIAHPKVDPVT +
Sbjct: 246 ANAGLVYFNGRLLAMSEDDLPYHVKIKGDGDLETIKRFSFDDQLDCPMIAHPKVDPVTGE 305

Query: 247 LHALSYNVVRKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVF 306
           LHALSYNVV+KPYLKYF+F     GKKSRD+D+TL QPTMIHDFA+T N V+IPDHQVVF
Sbjct: 306 LHALSYNVVQKPYLKYFKF--DKYGKKSRDLDITLHQPTMIHDFAVTRNFVVIPDHQVVF 363

Query: 307 KLSEMIRGGSPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGD 366
           KLSEMIRGGSPVI+DKNKTSRFG+LSKN+ +ESGIQWI+VPNCFCFHLWN+WEE + +GD
Sbjct: 364 KLSEMIRGGSPVIYDKNKTSRFGILSKNEVNESGIQWIEVPNCFCFHLWNSWEEISTNGD 423

Query: 367 RNVVVIGSCMDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVSGMNLEAGQVNRAL 426
           + +VVIGSCM+PPDS+FNE +  ++SELSEIRLN++T ESTR+ +V GMNLEAGQVNR  
Sbjct: 424 KIIVVIGSCMNPPDSIFNESETAIQSELSEIRLNMRTRESTRKAIVRGMNLEAGQVNRKF 483

Query: 427 LGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSK------ 480
           +GQKTRYVYLAIA+PWPKCSGIAKVDL T EVTKFMYG  R+GGEP FV +N +      
Sbjct: 484 VGQKTRYVYLAIAEPWPKCSGIAKVDLETKEVTKFMYGKGRYGGEPFFVAKNREGEEEED 543

Query: 481 ---------NVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKLPRRVPYGFH 531
                    NV +  E EG+IMGFVRDE +E SE+VIV A+ MEQVASV LP RVPYGFH
Sbjct: 544 DDDDGKKIGNVINDEEGEGYIMGFVRDEIKERSELVIVNATGMEQVASVSLPTRVPYGFH 603

Query: 532 GTFISEQELSGQVL 545
           GTF+SE EL GQ L
Sbjct: 604 GTFVSEDELKGQAL 617

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|408384462\|gb\|AFU61916.1\| 9-cis-epoxycarotenoid dioxygenase 3 [Fragaria x ananassa]	Back alignment and taxonomy information

>gi\|449465258\|ref\|XP_004150345.1\| PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic-like [Cucumis sativus] gi\|449531307\|ref\|XP_004172628.1\| PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297835456\|ref\|XP_002885610.1\| nine-cis-epoxycarotenoid dioxygenase 6 [Arabidopsis lyrata subsp. lyrata] gi\|297331450\|gb\|EFH61869.1\| nine-cis-epoxycarotenoid dioxygenase 6 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|225433416\|ref\|XP_002283185.1\| PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Vitis vinifera]	Back alignment and taxonomy information

>gi|15230080|ref|NP_189064.1| 9-cis-epoxycarotenoid dioxygenase NCED6 [Arabidopsis thaliana] gi|75273785|sp|Q9LRM7.1|NCED6_ARATH RecName: Full=9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic; Short=AtNCED6; Flags: Precursor gi|11994241|dbj|BAB01363.1| 9-cis-epoxycarotenoid dioxygenase [Arabidopsis thaliana] gi|332643354|gb|AEE76875.1| 9-cis-epoxycarotenoid dioxygenase NCED6 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|294471310\|gb\|ADE80897.1\| 9-cis-epoxycarotenoid dioxygenase [Camelina sativa]	Back alignment and taxonomy information

>gi\|297741917\|emb\|CBI33352.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|375127620\|gb\|AFA36207.1\| 9-cis-epoxycarotenoid dioxygenase 4 [Lactuca serriola]	Back alignment and taxonomy information

>gi\|375127622\|gb\|AFA36208.1\| 9-cis-epoxycarotenoid dioxygenase 4 [Lactuca serriola]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		545
TAIR\|locus:2093751		577	NCED6 "nine-cis-epoxycarotenoi	0.955	0.902	0.652	1.5e-193
TAIR\|locus:2091652		599	NCED3 "nine-cis-epoxycarotenoi	0.935	0.851	0.619	6.9e-173
TAIR\|locus:2032085		657	NCED9 "nine-cis-epoxycarotenoi	0.963	0.799	0.603	8.9e-173
TAIR\|locus:2202492		589	NCED5 "nine-cis-epoxycarotenoi	0.952	0.881	0.589	8.1e-163
TAIR\|locus:2124489		583	NCED2 "nine-cis-epoxycarotenoi	0.952	0.890	0.566	1.4e-158
TAIR\|locus:2134796		595	NCED4 "nine-cis-epoxycarotenoi	0.933	0.855	0.395	8.7e-95
TAIR\|locus:2087418		538	CCD1 "carotenoid cleavage diox	0.919	0.931	0.379	3.6e-82
UNIPROTKB\|O06785		501	MT0683 "Carotenoid cleavage ox	0.422	0.459	0.274	1.3e-36
ASPGD\|ASPL0000046682		480	AN1643 [Emericella nidulans (t	0.453	0.514	0.293	7.3e-24
UNIPROTKB\|Q53353		485	Q53353 "Lignostilbene-alpha,be	0.642	0.721	0.255	4.8e-23

TAIR\|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1875 (665.1 bits), Expect = 1.5e-193, P = 1.5e-193
 Identities = 345/529 (65%), Positives = 424/529 (80%)

Query:    16 VRPKYPHHLNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQECPVH 75
             ++P YP+ LN LQKLAA+ LDKIE S++   E+ + LPK  DP VQ+SGNFAPV ECPV 
Sbjct:    56 LKPTYPN-LNLLQKLAATMLDKIESSIVIPMEQNRPLPKPTDPAVQLSGNFAPVNECPVQ 114

Query:    76 HGLQVVGRIPDCLRGVYVRNGANPMFVPSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQ 135
             +GL+VVG+IP CL+GVY+RNGANPMF P  GHHLFDGDGMIHAV++G  NQ SYSCRYT+
Sbjct:   115 NGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTK 174

Query:   136 TSRLVQEAKYGKPVFPKPIXXXXXXXXXXXXXXFMARAGAGLVDGSRGMGVANAGLVYFH 195
             T+RLVQE   G+ VFPKPI              F ARAG GLVDG+RGMGVANAG+V+F+
Sbjct:   175 TNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFN 234

Query:   196 GSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVV 255
             G LLAMSEDDLPY+VKI   GDLETIGRF FDDQ+D  +IAHPKVD  T DLH LSYNV+
Sbjct:   235 GRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQIDSSVIAHPKVDATTGDLHTLSYNVL 294

Query:   256 RKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGG 315
             +KP+L+Y +F  +  GKK+RDV++TL +PTMIHDFAITEN V+IPD Q+VFKLSEMIRGG
Sbjct:   295 KKPHLRYLKF--NTCGKKTRDVEITLPEPTMIHDFAITENFVVIPDQQMVFKLSEMIRGG 352

Query:   316 SPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSC 375
             SPVI+ K K +RFGVLSK D   S I W+DVP+CFCFHLWNAWEE  ++GD  +VVIGSC
Sbjct:   353 SPVIYVKEKMARFGVLSKQDLTGSDINWVDVPDCFCFHLWNAWEERTEEGDPVIVVIGSC 412

Query:   376 MDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVSGMNLEAGQVNRALLGQKTRYVY 435
             M PPD++F+E  +P R ELSEIRLN++T ES R+V+V+G+NLEAG +NR+ +G+K+++VY
Sbjct:   413 MSPPDTIFSESGEPTRVELSEIRLNMRTKESNRKVIVTGVNLEAGHINRSYVGRKSQFVY 472

Query:   436 LAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGF 495
             +AIADPWPKCSGIAKVD+  G V++F YG  RFGGEP FVP+     G G ED+G++MGF
Sbjct:   473 IAIADPWPKCSGIAKVDIQNGTVSEFNYGPSRFGGEPCFVPE-----GEGEEDKGYVMGF 527

Query:   496 VRDERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSGQV 544
             VRDE ++ESE V+V A+ M+QVA+V+LP RVPYGFHGTF+SE +L  QV
Sbjct:   528 VRDEEKDESEFVVVDATDMKQVAAVRLPERVPYGFHGTFVSENQLKEQV 576

GO:0009507 "chloroplast" evidence=ISM

GO:0045549 "9-cis-epoxycarotenoid dioxygenase activity" evidence=IDA;TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA;TAS

GO:0009639 "response to red or far red light" evidence=IEP

GO:0010114 "response to red light" evidence=IEP

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR\|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|O06785 MT0683 "Carotenoid cleavage oxygenase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000046682 AN1643 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53353 Q53353 "Lignostilbene-alpha,beta-dioxygenase isozyme I" [Sphingomonas paucimobilis (taxid:13689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M6E8	NCED1_PHAVU	1, ., 1, 3, ., 1, 1, ., 5, 1	0.6037	0.9522	0.8439	N/A	no
O24592	NCED1_MAIZE	1, ., 1, 3, ., 1, 1, ., 5, 1	0.6159	0.9486	0.8559	N/A	no
Q9LRM7	NCED6_ARATH	1, ., 1, 3, ., 1, 1, ., 5, 1	0.6666	0.9743	0.9202	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.11.51	0.991
3rd Layer	1.13.11	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_302916.1	annotation not avaliable (577 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		545
PLN02258		590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.0
pfam03055		469	pfam03055, RPE65, Retinal pigment epithelial membr	1e-162
PLN02491		545	PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava	1e-120
COG3670		490	COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge	5e-95
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	3e-19

>gnl\|CDD\|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

 Score =  985 bits (2548), Expect = 0.0
 Identities = 363/545 (66%), Positives = 424/545 (77%), Gaps = 11/545 (2%)

Query: 2   PTPPPPDPVTFLEPVRPKYPHHLNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQ 61
               P  P   L P        LNPLQ+ AA+ALD +E +L+   E+   LPKT DP VQ
Sbjct: 55  KLSSPSPPSVTLPPAATTQTPQLNPLQRAAAAALDAVESALVSHLERQHPLPKTADPAVQ 114

Query: 62  ISGNFAPVQECPVHHGLQVVGRIPDCLRGVYVRNGANPMFVPSGGHHLFDGDGMIHAVTL 121
           I+GNFAPV E PV H L V GRIPDC+ GVYVRNGANP+F P  GHHLFDGDGM+HAV +
Sbjct: 115 IAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEPVAGHHLFDGDGMVHAVRI 174

Query: 122 GHANQASYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGS 181
           G+   ASY+CR+T+T+RLVQE   G+PVFPK IGELHGH G+ARL LF AR   GLVD S
Sbjct: 175 GN-GSASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDAS 233

Query: 182 RGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVD 241
           RG GVANAGLVYF+G LLAMSEDDLPY+V+I  DGDLET+GR+ FD QLD  MIAHPKVD
Sbjct: 234 RGTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQLDSSMIAHPKVD 293

Query: 242 PVTSDLHALSYNVVRKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPD 301
           PVT +L ALSY+VV+KPYLKYFRF  S DG+KS DV++ LDQPTM+HDFAITEN V+IPD
Sbjct: 294 PVTGELFALSYDVVKKPYLKYFRF--SPDGEKSPDVEIPLDQPTMMHDFAITENFVVIPD 351

Query: 302 HQVVFKLSEMIRGGSPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEEN 361
            QVVFKLSEMIRGGSPV++DKNKTSRFGVL KN  D S IQW++VP+CFCFHLWNAWEE 
Sbjct: 352 QQVVFKLSEMIRGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEP 411

Query: 362 NDDGDRNVVVIGSCMDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVSG--MNLEA 419
             D    VVVIGSCM PPDS+FNE  + +RS LSEIRLNL+TGESTRR ++SG  +NLEA
Sbjct: 412 ETD---EVVVIGSCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIISGEQVNLEA 468

Query: 420 GQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNS 479
           G VNR LLG+KTRY YLAIA+PWPK SG AKVDL TGEV K++YG  R+GGEP FVP+ S
Sbjct: 469 GMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTGEVKKYIYGEGRYGGEPFFVPRGS 528

Query: 480 KNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQE 539
              GS  ED+G+I+ FV DE + +SE+ +V A ++E  A+VKLP RVPYGFHGTFIS ++
Sbjct: 529 ---GSEAEDDGYILAFVHDEEKGKSELQVVNAVNLELEATVKLPSRVPYGFHGTFISAED 585

Query: 540 LSGQV 544
           L  Q 
Sbjct: 586 LLKQA 590

Length = 590

>gnl\|CDD\|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein	Back alignment and domain information

>gnl\|CDD\|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>gnl\|CDD\|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		545
PLN02258		590	9-cis-epoxycarotenoid dioxygenase NCED	100.0
PLN02491		545	carotenoid 9,10(9',10')-cleavage dioxygenase	100.0
COG3670		490	Lignostilbene-alpha,beta-dioxygenase and related e	100.0
PF03055		486	RPE65: Retinal pigment epithelial membrane protein	100.0
PLN02969		610	9-cis-epoxycarotenoid dioxygenase	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	100.0

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

Probab=100.00  E-value=6.3e-145  Score=1193.34  Aligned_cols=520  Identities=68%  Similarity=1.171  Sum_probs=491.6

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCceeeecccccCCCCCccccccccccCCCCcceeee
Q 044684           14 EPVRPKYPHHLNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVVGRIPDCLRGVYV   93 (545)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~g~f~pv~E~~~~~~l~V~G~iP~~L~Gt~~   93 (545)
                      .|..-+.+++||+.|++|+++||++|+.|++++|+.+||++++||+++++|||+|++||++..+++|+|+||+||+|+||
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~  146 (590)
T PLN02258         67 PPAATTQTPQLNPLQRAAAAALDAVESALVSHLERQHPLPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYV  146 (590)
T ss_pred             cccccCCccccCcchhhHHHHHHHHHHHHhhhccccCCCCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEE
Confidence            34445577889999999999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             ecCCCCCCCCCCcCccccCCCcEEEEEeCCCCceeeeeecccchhhhHHHhcCCCCCCccccccccchhHHHHHHHHHhh
Q 044684           94 RNGANPMFVPSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARA  173 (545)
Q Consensus        94 RNGPnp~~~~~~~~H~FDGdGMlh~~~~~~~G~a~y~~R~v~T~~~~~e~~ag~~~~~~~~g~~~~~~~~~r~~~~~~r~  173 (545)
                      ||||||+|++.+++||||||||||+|+|++ |+|+|+||||||++|++|+++||++|++.||+++++++++|..++++|.
T Consensus       147 RNGPnp~f~p~~~~H~FDGDGMvhav~f~d-G~a~y~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~  225 (590)
T PLN02258        147 RNGANPLFEPVAGHHLFDGDGMVHAVRIGN-GSASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARG  225 (590)
T ss_pred             EeCCCCCCCCCCCCccccCCceEEEEEECC-CeEEEEeeeecchhHHHHHhcCCcccccccccccccccccccchhhccc
Confidence            999999999888899999999999999999 9999999999999999999999999998899999889999998888898


Q ss_pred             ccccccCCCCceeeeeeeEEEcCeeeeccCCCCCceEEEccCCCceeeeecccCCCCccccccCCCCCCCCCceeeEeec
Q 044684          174 GAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYN  253 (545)
Q Consensus       174 ~~g~~~~~~~~~~aNt~v~~~~grLlAl~E~~~Py~~~i~p~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~tGel~~~~~~  253 (545)
                      ..+.++..+++|+|||+|++|+||||||||+|+||++++++++||||+|++||+|+|..+||||||+||.|||||+|+|+
T Consensus       226 ~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~  305 (590)
T PLN02258        226 LFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYD  305 (590)
T ss_pred             cccccccccccCCCceeEEEECCEEEEEEcCCCceEecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEe
Confidence            77888877788999999999999999999999999999888679999999999999988999999999999999999999


Q ss_pred             cccccceeeEEeecCCCCCCCCceeecCCCCceeeeeeeecCeEEecCceeEEeecccccCCCceEecCCCcceeccccC
Q 044684          254 VVRKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSPVIFDKNKTSRFGVLSK  333 (545)
Q Consensus       254 ~~~~p~l~~~~~~~~~~G~~~~~~~i~~~~p~~~HDfaiTeny~V~~~~pl~~~~~~m~~g~~~~~~d~~~~tr~~vipR  333 (545)
                      ...+|+++|+++  |++|++.+.++|+++.++|||||||||||+||+++|+++++.+|+.|++++.|++++++|||||||
T Consensus       306 ~~~~p~l~~~~~--d~~G~~~~~~~i~lp~p~~~HDFaiTenY~Vf~d~Pl~~~~~~~~~g~~~~~~d~~~~srfgVipR  383 (590)
T PLN02258        306 VVKKPYLKYFRF--SPDGEKSPDVEIPLDQPTMMHDFAITENFVVIPDQQVVFKLSEMIRGGSPVVYDKNKTSRFGVLPK  383 (590)
T ss_pred             ccCCCcEEEEEE--CCCCCEEeeEEeeCCCCccccceeccCceEEEEccCceEcHHHHhhCCCceEECCCCCcEEEEEEC
Confidence            777899999999  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceEEeCCceeeeeeccccccCCCCCcccEEEEcccCCCCCcccccCCCcccchhheeeecccCCccccccccc
Q 044684          334 NDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVS  413 (545)
Q Consensus       334 ~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~~~~vvv~~~~~~~~~~~~~~~~~~l~~~l~r~~ldl~tg~~~~~~l~~  413 (545)
                      ++++.++++||++|+||+||++|||||+++|+   ||+|+||+.+.+.+++...+.++++|+||||||+||+++++.++ 
T Consensus       384 ~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~---VVvd~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~-  459 (590)
T PLN02258        384 NATDASEIQWVEVPDCFCFHLWNAWEEPETDE---VVVIGSCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPII-  459 (590)
T ss_pred             CCCCCCceEEEecCCcEEEecccccccCCCCe---EEEEEecccChhhhcccccccccceEEEEEEECCCCceeeeEee-
Confidence            98767789999999999999999999854677   99999999887777776656778999999999999999988887 


Q ss_pred             c---cccccccccccccCcccceEEEEeeCCCCCCccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCC-CCCC
Q 044684          414 G---MNLEAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSG-REDE  489 (545)
Q Consensus       414 ~---~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~-~EDD  489 (545)
                      +   .++|||+||++|.||+|||+|+++.+++++++||+|+|+++|+++.|++|+++|+|||+||||++    +. +|||
T Consensus       460 ~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~----~~~~EDD  535 (590)
T PLN02258        460 SGEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTGEVKKYIYGEGRYGGEPFFVPRGS----GSEAEDD  535 (590)
T ss_pred             cCCCcccccceECHHHCCCccceEEEeccCCCCCCCeEEEEECCCCcEEEEECCCCccccCCEeccCCC----CCcccCC
Confidence            4   79999999999999999999999988888999999999999999999999999999999999997    44 5999


Q ss_pred             ceEEEEEeccccccceeEEEecccceEEEEEecCCccccccceeecCchhhhccc
Q 044684          490 GFIMGFVRDERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSGQV  544 (545)
Q Consensus       490 G~ll~~V~d~~~~~S~L~VlDA~~~~~~A~v~LP~rvP~GFHG~fv~~~~l~~~~  544 (545)
                      ||||++|||+++++|+|+||||++|+++|+|+||+||||||||+|++++||++|+
T Consensus       536 Gylls~V~d~~~~~SeL~IlDA~~l~~VArv~LP~rVP~GFHG~wv~~~~l~~q~  590 (590)
T PLN02258        536 GYILAFVHDEEKGKSELQVVNAVNLELEATVKLPSRVPYGFHGTFISAEDLLKQA  590 (590)
T ss_pred             cEEEEEEEECCCCceEEEEEeCCCCcccEEEECCCCCCCcccccccCHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999994

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection	Back alignment and domain information

>PLN02969 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		545
3npe_A		529	Structure Of Vp14 In Complex With Oxygen Length = 5		0.0
2biw_A		490	Crystal Structure Of Apocarotenoid Cleavage Oxygena		3e-25
3fsn_A		533	Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut		5e-04

>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529

Back alignment and structure

Iteration: 1

Score = 630 bits (1624), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/526 (59%), Positives = 377/526 (71%), Gaps = 9/526 (1%) Query: 23 HLNPLQKLAASALDKIEDSLIG-FFEKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVV 81 LN Q+ AA+ALD E+ + E+ LP T DP VQI+GNFAPV E P H L V Sbjct: 8 QLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVS 67 Query: 82 GRIPDCLRGVYVRNGANPMFVPSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLVQ 141 GRIP + GVY RNGANP F P GHHLFDGDGM+HA+ + + SY+CR+T+T+RL Q Sbjct: 68 GRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQ 127 Query: 142 EAKYGKPVFPKPIXXXXXXXXXXXXXXFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAM 201 E G+PVFPK I F ARA GLVD S G GVANAGLVYF+G LLAM Sbjct: 128 ERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAM 187 Query: 202 SEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKPYLK 261 SEDDLPY V++ DGDLET+GR+ FD QL C MIAHPK+DP T +LHALSY+V+++PYLK Sbjct: 188 SEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLK 247 Query: 262 YFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSPVIFD 321 YF F DG KS DV++ L+QPTMIHDFAITEN V++PDHQVVFKL EM+RGGSPV+ D Sbjct: 248 YFYF--RPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLD 305 Query: 322 KNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPDS 381 KTSRFGVL K+ AD S + W+DVP+CFCFHLWNAWE D+ VVVIGSCM P DS Sbjct: 306 AAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWE---DEATGEVVVIGSCMTPADS 362 Query: 382 VFNEHQDPVRSELSEIRLNLKTGESTRRVVV---SGMNLEAGQVNRALLGQKTRYVYLAI 438 +FNE + + S L+EIRL+ +TG STRR V+ +NLE G VNR LLG++TRY YLA+ Sbjct: 363 IFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAV 422 Query: 439 ADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRD 498 A+PWPK SG AKVDL TGE+TKF YG RFGGEP FVP + ED+G+++ FV D Sbjct: 423 AEPWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHD 482 Query: 499 ERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSGQV 544 ER SE+++V A+ M A+V+LP RVP+GFHGTFI+ QEL Q Sbjct: 483 ERAGTSELLVVNAADMRLEATVQLPSRVPFGFHGTFITGQELEAQA 528

PyMOL of 3npe

>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490

Back alignment and structure

>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		545
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	0.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	1e-151
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	1e-125
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529	Back alignment and structure

 Score =  541 bits (1394), Expect = 0.0
 Identities = 322/525 (61%), Positives = 388/525 (73%), Gaps = 9/525 (1%)

Query: 23  HLNPLQKLAASALDKIEDSLI-GFFEKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVV 81
            LN  Q+ AA+ALD  E+  +    E+   LP T DP VQI+GNFAPV E P  H L V 
Sbjct: 8   QLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVS 67

Query: 82  GRIPDCLRGVYVRNGANPMFVPSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLVQ 141
           GRIP  + GVY RNGANP F P  GHHLFDGDGM+HA+ + +    SY+CR+T+T+RL Q
Sbjct: 68  GRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQ 127

Query: 142 EAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAM 201
           E   G+PVFPK IGELHGH G+ARL LF ARA  GLVD S G GVANAGLVYF+G LLAM
Sbjct: 128 ERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAM 187

Query: 202 SEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKPYLK 261
           SEDDLPY V++  DGDLET+GR+ FD QL C MIAHPK+DP T +LHALSY+V+++PYLK
Sbjct: 188 SEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLK 247

Query: 262 YFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSPVIFD 321
           YF F    DG KS DV++ L+QPTMIHDFAITEN V++PDHQVVFKL EM+RGGSPV+ D
Sbjct: 248 YFYF--RPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLD 305

Query: 322 KNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPDS 381
             KTSRFGVL K+ AD S + W+DVP+CFCFHLWNAWE+        VVVIGSCM P DS
Sbjct: 306 AAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATG---EVVVIGSCMTPADS 362

Query: 382 VFNEHQDPVRSELSEIRLNLKTGESTRRVVV---SGMNLEAGQVNRALLGQKTRYVYLAI 438
           +FNE  + + S L+EIRL+ +TG STRR V+     +NLE G VNR LLG++TRY YLA+
Sbjct: 363 IFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAV 422

Query: 439 ADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRD 498
           A+PWPK SG AKVDL TGE+TKF YG  RFGGEP FVP +        ED+G+++ FV D
Sbjct: 423 AEPWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHD 482

Query: 499 ERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSGQ 543
           ER   SE+++V A+ M   A+V+LP RVP+GFHGTFI+ QEL  Q
Sbjct: 483 ERAGTSELLVVNAADMRLEATVQLPSRVPFGFHGTFITGQELEAQ 527

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		545
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	100.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	100.0
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	100.0

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}	Back alignment and structure

Probab=100.00  E-value=1e-141  Score=1164.33  Aligned_cols=518  Identities=62%  Similarity=1.090  Sum_probs=485.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhhhhccc-ccCCCCCCCCCCceeeecccccCCCCCccccccccccCCCCcceeeeecCCCC
Q 044684           21 PHHLNPLQKLAASALDKIEDSLIGFF-EKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVVGRIPDCLRGVYVRNGANP   99 (545)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~l~g~f~pv~E~~~~~~l~V~G~iP~~L~Gt~~RNGPnp   99 (545)
                      .++|||+|++|+++||++|++|++++ ++++||++++||+++|+|||+||+|+++..+++|+|+||+||+|+||||||||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGpnP   85 (529)
T 3npe_A            6 KKQLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANP   85 (529)
T ss_dssp             --CCCSHHHHHHHHHHHHHHHTCCCCCCTTSCCCTTTCHHHHTSGGGSCCCCEEEEESCCEEECCCTTCEEEEEECCBCC
T ss_pred             cCCCChhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccchhccCcccccccCCcccceEeecCCccCCceEEEecCCc
Confidence            46799999999999999999999986 88999999999999999999999999988899999999999999999999999


Q ss_pred             CCCCCCcCccccCCCcEEEEEeCCCCce-eeeeecccchhhhHHHhcCCCCCCccccccccchhHHHHHHHHHhhccccc
Q 044684          100 MFVPSGGHHLFDGDGMIHAVTLGHANQA-SYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLV  178 (545)
Q Consensus       100 ~~~~~~~~H~FDGdGMlh~~~~~~~G~a-~y~~R~v~T~~~~~e~~ag~~~~~~~~g~~~~~~~~~r~~~~~~r~~~g~~  178 (545)
                      +|++..++||||||||||+|+|++ |+| +|+||||||++|++|+++|+++|++++|++++.++++|..+++.|...+++
T Consensus        86 ~f~~~~~~HwFDGdGmlh~~~f~~-G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  164 (529)
T 3npe_A           86 CFDPVAGHHLFDGDGMVHALRIRN-GAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLV  164 (529)
T ss_dssp             SSCCSSCCCGGGSCBEEEEEEEET-TEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHTTSC
T ss_pred             CcCCcCCCccCCCCceEEEEEECC-CccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhcccccc
Confidence            998888899999999999999999 999 999999999999999999999999999999999999999888888877777


Q ss_pred             cCCCCceeeeeeeEEEcCeeeeccCCCCCceEEEccCCCceeeeecccCCCCccccccCCCCCCCCCceeeEeecccccc
Q 044684          179 DGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKP  258 (545)
Q Consensus       179 ~~~~~~~~aNt~v~~~~grLlAl~E~~~Py~~~i~p~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~tGel~~~~~~~~~~p  258 (545)
                      +...++++|||||++|+||||||||+|+||+++|||++||||+|++||+|+|.++||||||+||+||||++|+|+.+.+|
T Consensus       165 ~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p  244 (529)
T 3npe_A          165 DPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRP  244 (529)
T ss_dssp             CGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSC
T ss_pred             cccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCCCC
Confidence            76666789999999999999999999999999999866999999999999999999999999999999999999987789


Q ss_pred             ceeeEEeecCCCCCCCCceeecCCCCceeeeeeeecCeEEecCceeEEeecccccCCCceEecCCCcceeccccCCCCCC
Q 044684          259 YLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSPVIFDKNKTSRFGVLSKNDADE  338 (545)
Q Consensus       259 ~l~~~~~~~~~~G~~~~~~~i~~~~p~~~HDfaiTeny~V~~~~pl~~~~~~m~~g~~~~~~d~~~~tr~~vipR~~~~~  338 (545)
                      +++|+++  +++|++.+.++|+++.|+|||||||||||+||+++|+++|+.+|++|++++.|++++++|||||||++++.
T Consensus       245 ~~~~~~~--~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~g~~~~~~~p~~~tr~~VipR~~~~~  322 (529)
T 3npe_A          245 YLKYFYF--RPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADA  322 (529)
T ss_dssp             CCEEEEE--CTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTTTCCSEEECTTSCCEEEEEETTCSSG
T ss_pred             cEEEEEE--CCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhCCCCceEECCCCCcEEEEEECCCCCC
Confidence            9999999  99999999999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             CCceEEeCCceeeeeeccccccCCCCCcccEEEEcccCCCCCcccccCCCcccchhheeeecccCCccccccccc---cc
Q 044684          339 SGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVS---GM  415 (545)
Q Consensus       339 ~~v~w~e~p~~f~fH~~NA~Ee~~~~~~~~vvv~~~~~~~~~~~~~~~~~~l~~~l~r~~ldl~tg~~~~~~l~~---~~  415 (545)
                      +.|+||++|+||+||++|||||+++|+   ||++.||+.+.+.+++...+++++.|+|||||+++|+++++.|.+   +.
T Consensus       323 ~~vrw~e~~~~f~fH~~NA~Ee~~~~~---ivv~~~~~~~~~~~~~~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~  399 (529)
T 3npe_A          323 SEMAWVDVPDCFCFHLWNAWEDEATGE---VVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQV  399 (529)
T ss_dssp             GGCEEEECTTCEEEEEEEEEEETTTTE---EEEEEEEECCCCCSCCSSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCC
T ss_pred             CceEEEEcCCEEEEEecccEecCCCCe---EEEEEecccCchhhhhccchhhccceEEEEEcCCCCCEEeEEecccccCc
Confidence            789999999999999999999853467   999999988877788766677889999999999999999888873   37


Q ss_pred             ccccccccccccCcccceEEEEeeCCCCCCccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEE
Q 044684          416 NLEAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGF  495 (545)
Q Consensus       416 ~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~  495 (545)
                      ++|||+||++|+||+|||+|+++.++++++++|+|+|++||+++.|++|+++|+|||+||||+++.+++++|||||||++
T Consensus       400 ~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~~~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~lLs~  479 (529)
T 3npe_A          400 NLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTF  479 (529)
T ss_dssp             CEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCCEEEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEEEEE
T ss_pred             cccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCCCceEEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEEEEE
Confidence            89999999999999999999999888888999999999999999999999999999999999951111568999999999


Q ss_pred             EeccccccceeEEEecccceEEEEEecCCccccccceeecCchhhhccc
Q 044684          496 VRDERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSGQV  544 (545)
Q Consensus       496 V~d~~~~~S~L~VlDA~~~~~~A~v~LP~rvP~GFHG~fv~~~~l~~~~  544 (545)
                      |+|+.+++|+|+||||++|+++||++||+||||||||+|++++||++|+
T Consensus       480 V~d~~~~~S~LlILDA~~l~~vArv~LP~rvP~GfHG~wv~~~~l~~q~  528 (529)
T 3npe_A          480 VHDERAGTSELLVVNAADMRLEATVQLPSRVPFGFHGTFITGQELEAQA  528 (529)
T ss_dssp             EEBSSCCCEEEEEEETTTTEEEEEEEESSCCCCCSCEEEEEHHHHTTCC
T ss_pred             EEECCCCcEEEEEEeCCCCccceEEECCCCCCCCccccccCHHHhhhhh
Confidence            9999999999999999999999999999999999999999999999997

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00