Citrus Sinensis ID: 044685

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLHLSLSHSLSPLMCELPQMHLQNRRLIGRTPLWGMMYS
Secondary Structure (PSIPRED)
cccccccEEcccccEEEEcccccHHHHHHHHHccccccccccEEEccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEcccEEEEEcccccHHHcccHHHHcccccccccEEEEEEccccccccHHHHccHHHHHHcHHcccccccccccc
Coil and Loop (DISEMBL)
migpqplifghaaqfitvndyrfhpsvngwlerglhchpcfslslhlslshslsplmcelpQMHLQNRrligrtplwgmmys
Flexible Loop (DISEMBL)
MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLHLSLSHSLSPLMCELPQMHLqnrrligrtplwgmmys
Low Complexity Region (SEG)
MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGlhchpcfslslhlslshslsplMCELPQMHLQNRRLIGRTPLWGMMYS
Disordered region (IsUnstruct)
******LIFGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLHLSLSHSLSPLMCELPQMHLQNRRLIGRTPLWGM***
Disordered Region (DISOPRED)
***PQPLIFGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLHLSLSHSLSPLMCELPQMHLQNRRLIGRTPLWGMMYS
Disordered Region (DISEMBL)
MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLHLSLSHSLSPLMCELPQMHLQNRRLIGRTPLWGMMYS
Disordered Region (DISPRO)
MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLHLSLSHSLSPLMCELPQMHLQNRRLIGRTPLWGMMYS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLHLSLSHSLSPLMCELPQMHLQNRRLIGRTPLWGMMYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
147823105	463	hypothetical protein VITISV_000600 [Viti	0.426	0.075	0.685	3e-05
224130614	496	predicted protein [Populus trichocarpa]	0.426	0.070	0.657	4e-05
296087896	518	unnamed protein product [Vitis vinifera]	0.426	0.067	0.685	4e-05
225463946	467	PREDICTED: uncharacterized protein LOC10	0.426	0.074	0.685	5e-05
255580905	467	conserved hypothetical protein [Ricinus	0.426	0.074	0.628	8e-05
297828968	485	oxidoreductase [Arabidopsis lyrata subsp	0.426	0.072	0.628	0.0003
18396966	486	FAD/NAD(P)-binding oxidoreductase domain	0.426	0.072	0.628	0.0003

>gi|147823105|emb|CAN66332.1| hypothetical protein VITISV_000600 [Vitis vinifera]

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 26/35 (74%)

Query: 1  MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGL 35
          MI PQ LIF HAAQF TV D RF   V+GWLE+GL
Sbjct: 5  MIDPQSLIFDHAAQFFTVGDPRFAQLVDGWLEKGL 39

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130614|ref|XP_002328333.1| predicted protein [Populus trichocarpa] gi|222838048|gb|EEE76413.1| predicted protein [Populus trichocarpa]

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 27/35 (77%)

Query: 1   MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGL 35
           +I PQPLIF HAAQF TV+D RF   V+ WLE+GL
Sbjct: 141 VIDPQPLIFDHAAQFFTVSDPRFSELVDDWLEKGL 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087896|emb|CBI35179.3| unnamed protein product [Vitis vinifera]

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 26/35 (74%)

Query: 1   MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGL 35
           MI PQ LIF HAAQF TV D RF   V+GWLE+GL
Sbjct: 117 MIDPQSLIFDHAAQFFTVGDPRFAQLVDGWLEKGL 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463946|ref|XP_002268010.1| PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera]

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 26/35 (74%)

Query: 1   MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGL 35
           MI PQ LIF HAAQF TV D RF   V+GWLE+GL
Sbjct: 117 MIDPQSLIFDHAAQFFTVGDPRFAQLVDGWLEKGL 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580905|ref|XP_002531271.1| conserved hypothetical protein [Ricinus communis] gi|223529104|gb|EEF31084.1| conserved hypothetical protein [Ricinus communis]

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 28/35 (80%)

Query: 1   MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGL 35
           +I PQPL+F HAAQF TV+D +F   V+GWLE+GL
Sbjct: 134 VIDPQPLVFDHAAQFFTVSDPQFAQLVDGWLEKGL 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828968|ref|XP_002882366.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297328206|gb|EFH58625.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query: 1   MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGL 35
           +I PQ LIF HAAQF T +D RF   V+GWLE+GL
Sbjct: 136 IIEPQGLIFDHAAQFFTADDSRFIKLVDGWLEKGL 170

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396966|ref|NP_566235.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gi|6175169|gb|AAF04895.1|AC011437_10 unknown protein [Arabidopsis thaliana] gi|15215628|gb|AAK91359.1| AT3g04650/F7O18_13 [Arabidopsis thaliana] gi|28416461|gb|AAO42761.1| At3g04650/F7O18_13 [Arabidopsis thaliana] gi|332640593|gb|AEE74114.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana]

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query: 1   MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERGL 35
           +I PQ LIF HAAQF T +D RF   V+GWLE+GL
Sbjct: 136 IIEPQGLIFDHAAQFFTADDSRFIKLVDGWLEKGL 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:2084903	486	AT3G04650 [Arabidopsis thalian	0.414	0.069	0.617	3.4e-05

TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 21/34 (61%), Positives = 25/34 (73%)

Query:     1 MIGPQPLIFGHAAQFITVNDYRFHPSVNGWLERG 34
             +I PQ LIF HAAQF T +D RF   V+GWLE+G
Sbjct:   136 IIEPQGLIFDHAAQFFTADDSRFIKLVDGWLEKG 169


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.144   0.496    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        60   0.00091  102 3  11 22  0.48    27
                                                     29  0.37    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  542 (58 KB)
  Total size of DFA:  104 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.82u 0.15s 5.97t   Elapsed:  00:00:00
  Total cpu time:  5.82u 0.15s 5.97t   Elapsed:  00:00:00
  Start:  Fri May 10 05:57:29 2013   End:  Fri May 10 05:57:29 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.39

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.39  E-value=2.1e-13  Score=107.20  Aligned_cols=64  Identities=20%  Similarity=0.148  Sum_probs=56.2

Q ss_pred             ccccCCceeEecCcchHHHHHHHHHCCcccCCCCcccccCCCC----CCcCcccccCCcccccchhhcc
Q 044685            8 IFGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLHLSLS----HSLSPLMCELPQMHLQNRRLIG   72 (82)
Q Consensus         8 ~fDHGAQYFTar~p~F~~~V~~w~~~G~v~~W~~~~~~~~~~~----~s~~p~~~~~p~m~~~~r~l~~   72 (82)
                      .||||||||++|++.|.++|+.|.++|+|.+|++.++.+.+..    ..-.| |++.|+|+++.|.|+-
T Consensus        49 ~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~~~~~~~~~~~~~~~d~~p-yvg~pgmsalak~LAt  116 (331)
T COG3380          49 RFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFTGDGSPPRGDEDP-YVGEPGMSALAKFLAT  116 (331)
T ss_pred             cccccceeecCCchHHHHHHHHHHhCCceeeccccccccccCCCCCCCCCCc-cccCcchHHHHHHHhc
Confidence            4999999999999999999999999999999999998887553    22336 8999999999998874

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.33
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.71
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.14

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.33  E-value=0.00024  Score=50.61  Aligned_cols=65  Identities=9%  Similarity=-0.018  Sum_probs=51.7

Q ss_pred             ccccccCCceeEecCc---chHHHHHHHHHCCcccCCCCcccccCCCCCCcCcccccCCcccccchhhcc
Q 044685            6 PLIFGHAAQFITVNDY---RFHPSVNGWLERGLHCHPCFSLSLHLSLSHSLSPLMCELPQMHLQNRRLIG   72 (82)
Q Consensus         6 ~~~fDHGAQYFTar~p---~F~~~V~~w~~~G~v~~W~~~~~~~~~~~~s~~p~~~~~p~m~~~~r~l~~   72 (82)
                      ...+|||++||+++++   +|.++++.|.+.|++.+|.........  ....++++..++|....++|+.
T Consensus        53 ~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~l~~~l~~  120 (342)
T 3qj4_A           53 QCTADLGAQYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMVM--KEGDCNFVAPQGISSIIKHYLK  120 (342)
T ss_dssp             TCEEESSCCCEEECSSHHHHTHHHHHHHHHTTSCEECCSCEETCCC----CCEEEECTTCTTHHHHHHHH
T ss_pred             CceEecCCceEEcCchHHHHHHHHHHHHHhCCCeecCchhhcceec--cCCccceecCCCHHHHHHHHHH
Confidence            4579999999999988   899999999999999999876543322  1234678888999998888864

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=94.14  E-value=0.023  Score=35.11  Aligned_cols=41  Identities=24%  Similarity=0.278  Sum_probs=35.0

Q ss_pred             ccccccCCceeEecCcchHHHHHHHHHCCcccCCCCccccc
Q 044685            6 PLIFGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLH   46 (82)
Q Consensus         6 ~~~fDHGAQYFTar~p~F~~~V~~w~~~G~v~~W~~~~~~~   46 (82)
                      ...+|+|+|||++++++|...+..+...+....+...+...
T Consensus        48 ~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (336)
T 3kkj_A           48 AGALDMGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNF   88 (336)
T ss_dssp             TEEEECSCCCBCCCSHHHHHHHHHHHHHTSEEEECCCEEEE
T ss_pred             CceeecCccccccCcHHHHHHHHHHHhcccccccccccccc
Confidence            34689999999999999999999999999988887665443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00