Citrus Sinensis ID: 044706

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MALKHMFFILALTCLIMTNIANATSRNDRLNNNMKPSYDLATRLEASGGLTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPSPGGLAVIYQPQVSKVLA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHccccccccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccHHEEEHHccccccccccccHHHHHHEEEccccHHHHHHHHcccHHHHHHHccccccccccccccccccccccccHHcc
Coil and Loop (DISEMBL)
MALKHMFFILALTCLIMTNIanatsrndrlnnnmkpsyDLATRLeasggltdqadigpdccraidiitrncwpAMFISLEFIAEEGNIlrgycdassapspgglaviyqpqvskvla
Flexible Loop (DISEMBL)
MALKHMFFILALTCLIMTNIANatsrndrlnnNMKPSYDLATRLEASGgltdqadigpDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPspgglaviyqpqvskvla
Low Complexity Region (SEG)
MALKHMFFILALTCLIMTNIANATSRNDRLNNNMKPSYDLATRLEASGGLTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPSPGGLAVIYQPQVSKVLA
Disordered region (IsUnstruct)
***KHMFFILALTCLIMTNIANA************************GGLTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDAS******GLAVIY*********
Disordered Region (DISOPRED)
***KHMFFILALTCLIMTNI****************SYDLATRLEASGGLTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYC*****************QVSKV**
Disordered Region (DISEMBL)
MALKHMFFILALTCLIMTNIANATSRNDRLNNNMKPSYDLATRLEASGGLTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPSPGGLAVIYQPQVSKVLA
Disordered Region (DISPRO)
*ALKHMFFILALTCLIMTNIANATSRNDRLNNNMKPSYDLATRLEASGGLTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDA**********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALKHMFFILALTCLIMTNIANATSRNDRLNNNMKPSYDLATRLEASGGLTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPSPGGLAVIYQPQVSKVLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
Q9T039	127	Egg cell-secreted protein	yes	no	0.444	0.409	0.517	1e-11
Q9SJ23	125	Egg cell-secreted protein	no	no	0.495	0.464	0.442	7e-10
Q9SJ24	125	Egg cell-secreted protein	no	no	0.393	0.368	0.478	1e-09
Q9SRD8	158	Egg cell-secreted protein	no	no	0.452	0.335	0.471	6e-09
Q9FGG1	155	Egg cell-secreted protein	no	no	0.461	0.348	0.393	4e-06

>sp|Q9T039|EC14_ARATH Egg cell-secreted protein 1.4 OS=Arabidopsis thaliana GN=EC1.4 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 6/58 (10%)

Query: 50  LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYC------DASSAPSP 101
           L  +  +G  CC ++DIIT NCWPAM  SL F  EE N+LRG+C      D+S APSP
Sbjct: 67  LNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEANVLRGFCQNPNSGDSSPAPSP 124

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ23|EC13_ARATH Egg cell-secreted protein 1.3 OS=Arabidopsis thaliana GN=EC1.3 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 50  LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPSPGGLAVIYQ 109
           L  +  +G  CC A+D+IT +CWPAM  SL F  EE N+LRG+C    +P+ GG +    
Sbjct: 65  LNGETKLGYGCCNAVDVITTDCWPAMLTSLGFTLEETNVLRGFCQ---SPNSGGSSPALS 121

Query: 110 P 110
           P
Sbjct: 122 P 122

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ24|EC12_ARATH Egg cell-secreted protein 1.2 OS=Arabidopsis thaliana GN=EC1.2 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 34/46 (73%)

Query: 50  LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDA 95
           L  +  +G DCC+A+++IT +CWPAM  SL F ++E N+LRG+C +
Sbjct: 65  LNGETKLGVDCCQAVEVITTDCWPAMLTSLGFTSDETNVLRGFCQS 110

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRD8|EC11_ARATH Egg cell-secreted protein 1.1 OS=Arabidopsis thaliana GN=EC1.1 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query: 50  LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPSPG 102
           L  +  IGP CC AI  I R CWP M   L F A+EG++L+GYCD + + + G
Sbjct: 76  LNGETYIGPGCCSAIRTIGRKCWPTMIGVLGFTAQEGDMLQGYCDGNDSDNNG 128

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGG1|EC15_ARATH Egg cell-secreted protein 1.5 OS=Arabidopsis thaliana GN=EC1.5 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 53  QADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYC-------DASSAPSPGGLA 105
           +  I  DCC AI ++ ++CW  MF SL     EGN LR YC       + S +P+P  LA
Sbjct: 83  KGGIDKDCCGAIGLVVKDCWSVMFTSLGLTTMEGNNLREYCEFQAEKSELSPSPAPETLA 142

Query: 106 V 106
           +
Sbjct: 143 L 143

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
359482498	128	PREDICTED: uncharacterized protein LOC10	0.871	0.796	0.465	3e-21
296082551	135	unnamed protein product [Vitis vinifera]	0.752	0.651	0.5	2e-19
224060465	146	predicted protein [Populus trichocarpa]	0.914	0.732	0.462	2e-17
255578404	136	conserved hypothetical protein [Ricinus	0.435	0.375	0.647	1e-12
15235039	127	uncharacterized protein [Arabidopsis tha	0.444	0.409	0.517	5e-10
116830619	128	unknown [Arabidopsis thaliana]	0.444	0.406	0.517	5e-10
115484361	144	Os11g0168000 [Oryza sativa Japonica Grou	0.418	0.340	0.56	4e-09
297825031	125	hypothetical protein ARALYDRAFT_900605 [	0.444	0.416	0.482	4e-09
297802032	127	hypothetical protein ARALYDRAFT_490711 [	0.384	0.354	0.555	1e-08
297839547	158	hypothetical protein ARALYDRAFT_476835 [	0.735	0.544	0.352	2e-08

>gi|359482498|ref|XP_002274398.2| PREDICTED: uncharacterized protein LOC100260034 [Vitis vinifera] gi|147772490|emb|CAN65099.1| hypothetical protein VITISV_039724 [Vitis vinifera] gi|297743029|emb|CBI35896.3| unnamed protein product [Vitis vinifera]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 73/131 (55%), Gaps = 29/131 (22%)

Query: 1   MALKHMFFILALTCLIMTNIANATSRNDRLNNNMKPSYDLATRLEASGGLTD-------- 52
           MALK +F ++ALT L+    ANA +  D   N   P  DL TRLE SGGL +        
Sbjct: 1   MALKTLFLLVALTWLM----ANAAATRDLPTN---PGLDLTTRLETSGGLVECWNALMEI 53

Query: 53  --------------QADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSA 98
                         Q  +GP+CC+AI IITRNCWPAM  SL F AEEGNIL+GYC+ASS 
Sbjct: 54  RQCTNEIILFFLNGQTVLGPECCQAISIITRNCWPAMLTSLGFTAEEGNILQGYCNASSG 113

Query: 99  PSPGGLAVIYQ 109
           P       +YQ
Sbjct: 114 PPTPASPPLYQ 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082551|emb|CBI21556.3| unnamed protein product [Vitis vinifera]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 70/116 (60%), Gaps = 28/116 (24%)

Query: 3   LKHMFFILALTCLIMTNIANATSRNDRLNNNMKPS-YDLATRLEASGGLTD--------- 52
           +K++F ++AL+ LI     NA++  + L  +MKP+  DL  RLE SGGL +         
Sbjct: 4   IKNVFLLVALSWLI----TNASASRE-LPMSMKPAELDLVARLETSGGLVECWNALVELK 58

Query: 53  -------------QADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDA 95
                        QADIGPDCC AIDIITRNCWP M  SL F AEEGNILRGYCDA
Sbjct: 59  SCTNEIILFFLNGQADIGPDCCGAIDIITRNCWPTMLTSLGFTAEEGNILRGYCDA 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060465|ref|XP_002300213.1| predicted protein [Populus trichocarpa] gi|222847471|gb|EEE85018.1| predicted protein [Populus trichocarpa]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 79/147 (53%), Gaps = 40/147 (27%)

Query: 2   ALKHMFFILALTCLIMTNIANATSRNDRLNNNMKPSYD-LATRLEASGGL---------- 50
           A K++   L+LT LI TNI+ A +R+  +N   KP ++ L+ RLE  G L          
Sbjct: 3   AFKNLALFLSLTLLISTNISTA-ARDILIN---KPGFNSLSARLEDEGSLVECWNALVEI 58

Query: 51  ------------TDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDAS-- 96
                       T QADIGPDCCRAI  IT NCWPAMF SL F  EEGNILRGYCDAS  
Sbjct: 59  KSCTNEIVLFFMTGQADIGPDCCRAIHTITHNCWPAMFTSLGFTDEEGNILRGYCDASPN 118

Query: 97  ---------SAPSP--GGLAVIYQPQV 112
                    SAPSP   G    YQP +
Sbjct: 119 SPSIYFSPASAPSPLAAGAPAQYQPML 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578404|ref|XP_002530067.1| conserved hypothetical protein [Ricinus communis] gi|223530420|gb|EEF32307.1| conserved hypothetical protein [Ricinus communis]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 37/51 (72%)

Query: 50  LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPS 100
           L    DIG DCCR+I I T NCWPAM  S+ F AEEGNILRGYCD +S+ S
Sbjct: 67  LNGHTDIGADCCRSIAIFTHNCWPAMLTSIGFTAEEGNILRGYCDNASSSS 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235039|ref|NP_195644.1| uncharacterized protein [Arabidopsis thaliana] gi|75213705|sp|Q9T039.1|EC14_ARATH RecName: Full=Egg cell-secreted protein 1.4; Flags: Precursor gi|4914446|emb|CAB43649.1| hypothetical protein [Arabidopsis thaliana] gi|7270918|emb|CAB80597.1| hypothetical protein [Arabidopsis thaliana] gi|91805627|gb|ABE65542.1| hypothetical protein At4g39340 [Arabidopsis thaliana] gi|332661658|gb|AEE87058.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 6/58 (10%)

Query: 50  LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYC------DASSAPSP 101
           L  +  +G  CC ++DIIT NCWPAM  SL F  EE N+LRG+C      D+S APSP
Sbjct: 67  LNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEANVLRGFCQNPNSGDSSPAPSP 124

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830619|gb|ABK28267.1| unknown [Arabidopsis thaliana]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 6/58 (10%)

Query: 50  LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYC------DASSAPSP 101
           L  +  +G  CC ++DIIT NCWPAM  SL F  EE N+LRG+C      D+S APSP
Sbjct: 67  LNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEANVLRGFCQNPNSGDSSPAPSP 124

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115484361|ref|NP_001065842.1| Os11g0168000 [Oryza sativa Japonica Group] gi|62701925|gb|AAX92998.1| hypothetical protein LOC_Os11g06730 [Oryza sativa Japonica Group] gi|62734370|gb|AAX96479.1| ECA1 protein [Oryza sativa Japonica Group] gi|77548909|gb|ABA91706.1| expressed protein [Oryza sativa Japonica Group] gi|113644546|dbj|BAF27687.1| Os11g0168000 [Oryza sativa Japonica Group] gi|125533539|gb|EAY80087.1| hypothetical protein OsI_35256 [Oryza sativa Indica Group] gi|215692958|dbj|BAG88378.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 1/50 (2%)

Query: 53  QADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDAS-SAPSP 101
           ++ +GPDCC AI  +TR CWPAM  S+ F A+E +ILRG+CDA  +AP P
Sbjct: 78  ESYLGPDCCVAIRTVTRRCWPAMLASIGFTAQEADILRGFCDAELAAPPP 127

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825031|ref|XP_002880398.1| hypothetical protein ARALYDRAFT_900605 [Arabidopsis lyrata subsp. lyrata] gi|297326237|gb|EFH56657.1| hypothetical protein ARALYDRAFT_900605 [Arabidopsis lyrata subsp. lyrata]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 6/58 (10%)

Query: 50  LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCD------ASSAPSP 101
           L  +  +G  CC A+D+IT +CWPAM  SL F +EE N+LRG+C       +S APSP
Sbjct: 65  LNGETKLGSGCCNAVDVITTDCWPAMLTSLGFTSEETNVLRGFCQSPTSGGSSPAPSP 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802032|ref|XP_002868900.1| hypothetical protein ARALYDRAFT_490711 [Arabidopsis lyrata subsp. lyrata] gi|297314736|gb|EFH45159.1| hypothetical protein ARALYDRAFT_490711 [Arabidopsis lyrata subsp. lyrata]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 30/45 (66%)

Query: 50  LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCD 94
           L  +  +G  CC A+DIIT NCWPAM  SL F  EE N+LRG+C 
Sbjct: 67  LNGETKLGVSCCEAVDIITTNCWPAMLTSLGFTPEEANVLRGFCQ 111

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839547|ref|XP_002887655.1| hypothetical protein ARALYDRAFT_476835 [Arabidopsis lyrata subsp. lyrata] gi|297333496|gb|EFH63914.1| hypothetical protein ARALYDRAFT_476835 [Arabidopsis lyrata subsp. lyrata]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 16/102 (15%)

Query: 29  RLNNNMKPSYDLATRLEASGG------LTDQADIGPDCCRAIDIITRNCWPAMFISLEFI 82
           RL+ +    +D   +L+   G      L  +  IGP CC AI  I R CWP M   L F 
Sbjct: 50  RLDEDTGYCWDSLMQLQHCSGELILFFLNGETYIGPGCCSAIRTIGRKCWPTMIGVLGFT 109

Query: 83  AEEGNILRGYCDASS----------APSPGGLAVIYQPQVSK 114
           A+EG++L+GYCD +           A SP  L+V ++P V +
Sbjct: 110 AQEGDMLQGYCDGNDSDNNGEDHALASSPLPLSVDFKPMVVR 151

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:2136293	127	EC1.4 "AT4G39340" [Arabidopsis	0.444	0.409	0.517	8.2e-12
TAIR|locus:2052536	125	EC1.2 "AT2G21740" [Arabidopsis	0.435	0.408	0.462	7.4e-11
TAIR|locus:2052556	125	EC1.3 "AT2G21750" [Arabidopsis	0.495	0.464	0.442	1.2e-10
TAIR|locus:2030136	158	EC1.1 "AT1G76750" [Arabidopsis	0.452	0.335	0.471	1.8e-09
TAIR|locus:2176080	155	EC1.5 "AT5G64720" [Arabidopsis	0.435	0.329	0.413	1e-06

TAIR|locus:2136293 EC1.4 "AT4G39340" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 30/58 (51%), Positives = 37/58 (63%)

Query:    50 LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYC------DASSAPSP 101
             L  +  +G  CC ++DIIT NCWPAM  SL F  EE N+LRG+C      D+S APSP
Sbjct:    67 LNGETKLGVSCCESVDIITTNCWPAMLTSLGFTPEEANVLRGFCQNPNSGDSSPAPSP 124

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2052536 EC1.2 "AT2G21740" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 25/54 (46%), Positives = 38/54 (70%)

Query:    50 LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPSPGG 103
             L  +  +G DCC+A+++IT +CWPAM  SL F ++E N+LRG+C +   P+ GG
Sbjct:    65 LNGETKLGVDCCQAVEVITTDCWPAMLTSLGFTSDETNVLRGFCQS---PNSGG 115

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2052556 EC1.3 "AT2G21750" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query:    50 LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPSPGGLAVIYQ 109
             L  +  +G  CC A+D+IT +CWPAM  SL F  EE N+LRG+C +   P+ GG +    
Sbjct:    65 LNGETKLGYGCCNAVDVITTDCWPAMLTSLGFTLEETNVLRGFCQS---PNSGGSSPALS 121

Query:   110 P 110
             P
Sbjct:   122 P 122

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2030136 EC1.1 "AT1G76750" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 25/53 (47%), Positives = 33/53 (62%)

Query:    50 LTDQADIGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPSPG 102
             L  +  IGP CC AI  I R CWP M   L F A+EG++L+GYCD + + + G
Sbjct:    76 LNGETYIGPGCCSAIRTIGRKCWPTMIGVLGFTAQEGDMLQGYCDGNDSDNNG 128

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0005622 "intracellular" evidence=IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0048240 "sperm capacitation" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2176080 EC1.5 "AT5G64720" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 24/58 (41%), Positives = 32/58 (55%)

Query:    56 IGPDCCRAIDIITRNCWPAMFISLEFIAEEGNILRGYCD-------ASSAPSPGGLAV 106
             I  DCC AI ++ ++CW  MF SL     EGN LR YC+        S +P+P  LA+
Sbjct:    86 IDKDCCGAIGLVVKDCWSVMFTSLGLTTMEGNNLREYCEFQAEKSELSPSPAPETLAL 143


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      117       117   0.00091  102 3  11 22  0.44    30
                                                     29  0.46    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  119 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.73u 0.14s 11.87t   Elapsed:  00:00:01
  Total cpu time:  11.73u 0.14s 11.87t   Elapsed:  00:00:01
  Start:  Fri May 10 06:38:34 2013   End:  Fri May 10 06:38:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005576 "extracellular region" evidence=IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034113001 SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgun sequence); (128 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	117
pfam05617	67	pfam05617, Prolamin_like, Prolamin-like	5e-08

>gnl|CDD|218659 pfam05617, Prolamin_like, Prolamin-like

 Score = 46.0 bits (109), Expect = 5e-08
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 5/48 (10%)

Query: 50 LTDQADIGPDCCRAIDIITRNCWPA---MFISLEFIAEEGNILRGYCD 94
            ++ ++GPDCC+AI  I  +CWPA   MF SL F   +  +L+ YC 
Sbjct: 22 FGNKGNLGPDCCQAILKIGDDCWPALFKMFPSLPFFPPK--LLKNYCS 67

Both DUF784 and DUF1278 members are found to be expressed in the plant embryo sac and are regulated by the Myb98 transcription factor. Computational analysis has revealed that they are homologous to the plant prolamin superfamily (Protease inhibitor-seed storage-LTP family, pfam00234). In contrast to the typical prolamin members that have eight conserved Cys residues forming four pairs of disulfide bonds, both DUF784 and DUF1278 domains only contain six conserved Cys residues that may form three pairs of disulfide bonds. These two domains may have potential functions in lipid transfer or protection during plant embryo sac development and reproduction. This family has been merged with the DUF1278 family. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
PLN00213	118	predicted protein; Provisional	99.97
PF05617	70	Prolamin_like: Prolamin-like; InterPro: IPR008502	99.24
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	90.64

>PLN00213 predicted protein; Provisional

Probab=99.97  E-value=2e-32  Score=202.01  Aligned_cols=97  Identities=26%  Similarity=0.503  Sum_probs=85.2

Q ss_pred             CchhHHHHHHHHHHHHHhcccccccCCCC--C----C-CCCCCCcchhhHHh-----------hccc-cccce-ecChhh
Q 044706            1 MALKHMFFILALTCLIMTNIANATSRNDR--L----N-NNMKPSYDLATRLE-----------ASGG-LTDQA-DIGPDC   60 (117)
Q Consensus         1 Ma~k~~f~ll~v~~ii~s~~~na~~r~~p--~----p-~~~~~~~~l~~rl~-----------~~g~-lnG~~-~iGp~C   60 (117)
                      |+||||++||+|+||++++  |||++|+|  +    | +..++++|+.|||+           |+++ ++||| +||++|
T Consensus         1 m~iknV~~ll~v~cIvvsV--na~lpqf~~~fp~~~p~~~~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aC   78 (118)
T PLN00213          1 MSIKNVFLLLAVLCIIVSV--NAQLPQFPAQLPFLFPFQLIPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPAC   78 (118)
T ss_pred             CchHHHHHHHHHHHHHhee--ccCCCCCCCCCCCCCCccCCCCCccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHH
Confidence            9999999999999999999  99998885  2    2 22346689999997           6666 79999 799999


Q ss_pred             hHHHHHhhhCccccccccCCCCchhhhHHhhhcccCCCCCCCCc
Q 044706           61 CRAIDIITRNCWPAMFISLEFIAEEGNILRGYCDASSAPSPGGL  104 (117)
Q Consensus        61 CkAi~~i~~~CWP~Mfps~pftp~e~~~Lkg~C~~~~~psP~~~  104 (117)
                      ||||++.+ ||||+| |++||||+   +||++|++++..+++++
T Consensus        79 CKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~~  117 (118)
T PLN00213         79 CKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPIP  117 (118)
T ss_pred             HHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCCC
Confidence            99999977 999996 99999999   99999999988777654

>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana

Probab=99.24  E-value=3.4e-12  Score=82.91  Aligned_cols=54  Identities=28%  Similarity=0.647  Sum_probs=42.9

Q ss_pred             hhhHHh-hccc-cccce-ecChhhhHHHHHhhhCcccc---ccccCCCCch--hhhHHhhhcc
Q 044706           40 LATRLE-ASGG-LTDQA-DIGPDCCRAIDIITRNCWPA---MFISLEFIAE--EGNILRGYCD   94 (117)
Q Consensus        40 l~~rl~-~~g~-lnG~~-~iGp~CCkAi~~i~~~CWP~---Mfps~pftp~--e~~~Lkg~C~   94 (117)
                      +..|.. |..+ ++|++ +||++||++|+.++++|||+   ||++.||+++  + +.|+++|+
T Consensus         9 ~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r-~~l~~~C~   70 (70)
T PF05617_consen    9 SPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLR-DLLWNHCS   70 (70)
T ss_pred             ccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhH-HHHHhhcC
Confidence            445553 5555 56994 89999999999999999999   6677777766  5 69999996

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=90.64  E-value=0.16  Score=36.15  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=14.0

Q ss_pred             CchhHHHHHH---HHHHHHHhcccccccCCC
Q 044706            1 MALKHMFFIL---ALTCLIMTNIANATSRND   28 (117)
Q Consensus         1 Ma~k~~f~ll---~v~~ii~s~~~na~~r~~   28 (117)
                      ||+|+++||.   ++++||+|-   +..|++
T Consensus         1 MaSK~~llL~l~LA~lLlisSe---vaa~~~   28 (95)
T PF07172_consen    1 MASKAFLLLGLLLAALLLISSE---VAAREL   28 (95)
T ss_pred             CchhHHHHHHHHHHHHHHHHhh---hhhHHh
Confidence            9999865543   334444443   445555

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00