Citrus Sinensis ID: 044736

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MQLRRIKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRSLSFSDRVGLQYSTTVDQDSSMGKSVRSPQRTKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSFDNNYA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHccccccccEEEEEccccccccccccccccccccccccccEEcccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHEEHHHccccccccccc
Coil and Loop (DISEMBL)
MQLRRIKKAVKKLNMILSVLKLSRWHLASIcgttfsknrrslsfsdrvglqysttvdqdssmgksvrspqrtkgcaydhygdddndnidrnSEVFITNFRRRLLYERQVSLELLYRRVNSFDNNYA
Flexible Loop (DISEMBL)
mqlrrikkaVKKLNMILSVLKLSRWHLASICGttfsknrrslsfsdRVGLQysttvdqdssmgksvrspqrtKGCAYDhygdddndnidrNSEVFITNFRRRLLYERQVSlellyrrvnsfdnnya
Low Complexity Region (SEG)
MQLRRIKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRSLSFSDRVGLQYSTTVDQDSSMGKSVRSPQRTKGCAYDHYGdddndnidrnSEVFITNFRRRLLYERQVSLELLYRRVNSFDNNYA
Disordered region (IsUnstruct)
*******KAVKKLNMILSVLKLSRWHLASICGTTFSKNR**L*F*******************************AYDHYG*****NIDRNSEVFITNFRRRLLYERQVSLELLYRRVNS******
Disordered Region (DISOPRED)
******K*AVKKLNMILSVLKLSRWHLA************************************************************DRNSEVFITNFRRRLLYERQVSLELLYRRVN*******
Disordered Region (DISEMBL)
MQLRRIKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRSLSFSDRVGLQYSTT****************TKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSFDNNYA
Disordered Region (DISPRO)
*QLRRIKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRSLSFSDRVGLQYST********************C*YDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSF*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQLRRIKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRSLSFSDRVGLQYSTTVDQDSSMGKSVRSPQRTKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSFDNNYA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
356562451	134	PREDICTED: uncharacterized protein LOC10	0.880	0.828	0.420	8e-14
255646825	132	unknown [Glycine max]	0.833	0.795	0.432	2e-13
255548568	126	conserved hypothetical protein [Ricinus	0.880	0.880	0.429	4e-13
356547332	132	PREDICTED: uncharacterized protein LOC10	0.833	0.795	0.423	1e-12
224121176	128	predicted protein [Populus trichocarpa]	0.896	0.882	0.443	1e-11
225446076	128	PREDICTED: uncharacterized protein LOC10	0.880	0.867	0.421	2e-11
449457151	120	PREDICTED: uncharacterized protein LOC10	0.880	0.925	0.422	2e-11
15242150	130	uncharacterized protein [Arabidopsis tha	0.936	0.907	0.398	3e-11
116830679	131	unknown [Arabidopsis thaliana]	0.936	0.900	0.398	3e-11
224143756	125	predicted protein [Populus trichocarpa]	0.880	0.888	0.408	8e-11

>gi|356562451|ref|XP_003549485.1| PREDICTED: uncharacterized protein LOC100798434 [Glycine max]

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 74/126 (58%), Gaps = 15/126 (11%)

Query: 3   LRRIKKAVKKLNMILSVLKLSR-WHLASIC-GTTFSKNRRSLSFSDRVGLQYSTT----V 56
           L R++ AVKK+ ++LS   LS  WH A+I  G + SK  R +SF+DR GL   T      
Sbjct: 14  LSRLRVAVKKMKLLLSATVLSHAWHAATILRGVSMSK--RQISFNDRPGLMMCTASSDET 71

Query: 57  DQDSSMGKSVRSPQRTKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYR 116
           D +  +  +  S QRT  C  D       D+ID+ +E+FI+NFRR+L  ERQ+SL+L Y 
Sbjct: 72  DSEGLVSPAHHSLQRTISCPSD-------DDIDKRAEMFISNFRRQLNMERQISLQLRYC 124

Query: 117 RVNSFD 122
             NSF+
Sbjct: 125 SQNSFE 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646825|gb|ACU23884.1| unknown [Glycine max]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 13/118 (11%)

Query: 9   AVKKLNMILSVLKLSR-WHLASI-CGTTFSKNRRSLSFSDRVGLQYSTTVDQDSS--MGK 64
           AV+K+ ++L+   LS  WH A+I CG + SK  R +SF+DR GL   T  D+  S  +  
Sbjct: 20  AVQKVKLLLNATVLSHAWHAATILCGVSLSK--RQISFNDRPGLMMRTASDETDSEDLVF 77

Query: 65  SVRSPQRTKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSFD 122
              S QRT  C  D       D+ID+ +E+FI NFRR+L  ERQ+SL+L Y R NS +
Sbjct: 78  PAHSLQRTISCPSD-------DDIDKRAEMFINNFRRQLKMERQISLQLRYCRENSLE 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548568|ref|XP_002515340.1| conserved hypothetical protein [Ricinus communis] gi|223545284|gb|EEF46789.1| conserved hypothetical protein [Ricinus communis]

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 10/121 (8%)

Query: 6   IKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRSL-SFSDRVGLQYSTTVDQDSSMGK 64
           +KKAVKKLN +L    L  W +ASI      + +  L SF+DR+GL +    D +S   +
Sbjct: 15  LKKAVKKLNFLLR-FNLRGWRIASIVRNVSKRPQLRLKSFNDRLGL-HGCIEDLESDRSE 72

Query: 65  SVRSPQRTKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSFDNN 124
            V++ QRT+  A D       ++ID+ +E+FI NFRR+LL ERQVSL++ Y R NSF  +
Sbjct: 73  MVKTLQRTRSYASD-------EDIDQRAEIFIANFRRQLLLERQVSLQVRYYRGNSFTRD 125

Query: 125 Y 125
           Y
Sbjct: 126 Y 126

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547332|ref|XP_003542068.1| PREDICTED: uncharacterized protein LOC100814899 [Glycine max]

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 13/118 (11%)

Query: 9   AVKKLNMILSVLKLSR-WHLASIC-GTTFSKNRRSLSFSDRVGLQYSTTVDQDSS--MGK 64
           AV+K+ ++L+   LS  WH A+I  G + SK  R +SF+DR GL   T  D+  S  +  
Sbjct: 20  AVQKVKLLLNATVLSHAWHAATILRGVSLSK--RQISFNDRPGLMMCTASDETDSEDLVS 77

Query: 65  SVRSPQRTKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSFD 122
              S QRT  C  D       D+ID+ +E+FI NFRR+L  ERQ+SL+L Y R NS +
Sbjct: 78  PAHSLQRTISCPSD-------DDIDKRAEMFINNFRRQLKMERQISLQLRYCRENSLE 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121176|ref|XP_002330762.1| predicted protein [Populus trichocarpa] gi|224121184|ref|XP_002330764.1| predicted protein [Populus trichocarpa] gi|222872564|gb|EEF09695.1| predicted protein [Populus trichocarpa] gi|222872566|gb|EEF09697.1| predicted protein [Populus trichocarpa]

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 75/124 (60%), Gaps = 11/124 (8%)

Query: 6   IKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRS---LSFSDRVGLQYSTT-VDQDSS 61
           +K+AVKK+N +LS     +W LASI     S + R    LSF+DR+GL  +   V+ D  
Sbjct: 12  LKRAVKKINFLLS-FNFRKWRLASILSIASSSSSRRTGRLSFNDRIGLHGAIEDVESDHQ 70

Query: 62  MGKSVRSPQRTKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSF 121
             K VR+ +R +      YG  D D ID+ +E+FI NFR++LL ERQVSL+L Y R NSF
Sbjct: 71  KYKPVRTFERVRS-----YGSSDED-IDKRAEIFINNFRQQLLIERQVSLQLRYYRGNSF 124

Query: 122 DNNY 125
             +Y
Sbjct: 125 GRDY 128

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446076|ref|XP_002272519.1| PREDICTED: uncharacterized protein LOC100264996 [Vitis vinifera]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 10/121 (8%)

Query: 3   LRRIKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRSLSFSDRVGLQYSTTVDQDSSM 62
           L R+++AVKK+  +L+   + RWH+AS+  T+ S+ RR  SF+DR GL+   T D DS  
Sbjct: 13  LSRLRRAVKKVGFLLN-FGIHRWHVASMLRTS-SETRR-FSFNDRPGLR-GCTEDTDSE- 67

Query: 63  GKSVRSPQRTKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSFD 122
                 P  ++G      G  + D +D+ +EVFI NF R+L  ERQVSLEL Y + NSF+
Sbjct: 68  ----DQPGSSRGIQRTISGPCEED-VDKRAEVFIANFYRQLQMERQVSLELRYCKGNSFE 122

Query: 123 N 123
           +
Sbjct: 123 S 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457151|ref|XP_004146312.1| PREDICTED: uncharacterized protein LOC101218317 [Cucumis sativus] gi|449510648|ref|XP_004163722.1| PREDICTED: uncharacterized protein LOC101224640 [Cucumis sativus]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 76/123 (61%), Gaps = 12/123 (9%)

Query: 3   LRRIKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRSLSFSDRVGLQYST---TVDQD 59
           L R++KAVKK+  +++   + RW LA++ G T S+N R LSF++R GL+  +    ++++
Sbjct: 7   LGRLRKAVKKIRFMMN-FSIQRWRLAAMLGRTSSRNLR-LSFTERPGLKACSEDIIMEEE 64

Query: 60  SSMGKSVRSPQRTKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVN 119
            S+  S R  QRT   A +       D++D  +E FI NF R+L  ERQVSLEL Y R N
Sbjct: 65  QSVSSSSRGLQRTTSYASE-------DDVDSRAEAFIANFYRQLRIERQVSLELQYCRGN 117

Query: 120 SFD 122
           SFD
Sbjct: 118 SFD 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242150|ref|NP_200559.1| uncharacterized protein [Arabidopsis thaliana] gi|9758312|dbj|BAB08786.1| unnamed protein product [Arabidopsis thaliana] gi|91805711|gb|ABE65584.1| hypothetical protein At5g57510 [Arabidopsis thaliana] gi|332009526|gb|AED96909.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 5/123 (4%)

Query: 3   LRRIKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRSLSFSDRVGLQYSTTVDQDSSM 62
           L R+++AV K+  +LS    S W L  + G++ S +   LSF+DR GL  + T ++  S 
Sbjct: 10  LNRLRQAVNKVKFVLSFKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLTAAFTENEPDST 69

Query: 63  GKSVRSPQRTKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSFD 122
           G S  +  RT   +YD   D+D   ID  +E+FI NF R+L  ERQ+SLEL Y + N+  
Sbjct: 70  GSSRGALYRT--VSYDQSSDED---IDNKAEMFIANFYRQLKIERQISLELKYCQGNNQS 124

Query: 123 NNY 125
            NY
Sbjct: 125 FNY 127

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830679|gb|ABK28297.1| unknown [Arabidopsis thaliana]

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 5/123 (4%)

Query: 3   LRRIKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRSLSFSDRVGLQYSTTVDQDSSM 62
           L R+++AV K+  +LS    S W L  + G++ S +   LSF+DR GL  + T ++  S 
Sbjct: 10  LNRLRQAVNKVKFVLSFKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLTAAFTENEPDST 69

Query: 63  GKSVRSPQRTKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRVNSFD 122
           G S  +  RT   +YD   D+D   ID  +E+FI NF R+L  ERQ+SLEL Y + N+  
Sbjct: 70  GSSRGALYRT--VSYDQSSDED---IDNKAEMFIANFYRQLKIERQISLELKYCQGNNQS 124

Query: 123 NNY 125
            NY
Sbjct: 125 FNY 127

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143756|ref|XP_002325063.1| predicted protein [Populus trichocarpa] gi|222866497|gb|EEF03628.1| predicted protein [Populus trichocarpa]

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 3   LRRIKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRSLSFSDRVGLQYSTTVDQDSSM 62
           L R+ +A+KK+ +IL+ L +SRW LAS+ G   S+ R  LSF+DR GL+       +   
Sbjct: 9   LSRLTRAIKKVKIILN-LDMSRWRLASMIGAASSR-RHQLSFNDRPGLR-----GWEDID 61

Query: 63  GKSVRSPQRTKGCAYDHYGDDDNDNIDRNSEVFITNFRRRLLYERQVSLELLY-RRVNSF 121
            +    P  +KG  +        D+ID+ +E+FI NFRR+L  ERQ+SLEL Y + +NSF
Sbjct: 62  DEESEDPGSSKGL-HRTISYQSEDDIDKRAEMFIENFRRQLQIERQISLELKYFQGLNSF 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2174537	130	AT5G57510 "AT5G57510" [Arabido	0.936	0.907	0.365	1.9e-12

TAIR|locus:2174537 AT5G57510 "AT5G57510" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 45/123 (36%), Positives = 66/123 (53%)

Query:     3 LRRIKKAVKKLNMILSVLKLSRWHLASICGTTFSKNRRSLSFSDRVGLQYSTTVDQDSSM 62
             L R+++AV K+  +LS    S W L  + G++ S +   LSF+DR GL  + T ++  S 
Sbjct:    10 LNRLRQAVNKVKFVLSFKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLTAAFTENEPDST 69

Query:    63 GKSVRSPQRTKGCAYDHYGXXXXXXXXXXSEVFITNFRRRLLYERQVSLELLYRRVNSFD 122
             G S  +  RT   +YD             +E+FI NF R+L  ERQ+SLEL Y + N+  
Sbjct:    70 GSSRGALYRT--VSYDQ---SSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQS 124

Query:   123 NNY 125
              NY
Sbjct:   125 FNY 127


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.133   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126       116   0.00091  102 3  11 22  0.41    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  116 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.48u 0.11s 10.59t   Elapsed:  00:00:01
  Total cpu time:  10.48u 0.11s 10.59t   Elapsed:  00:00:01
  Start:  Fri May 10 07:38:55 2013   End:  Fri May 10 07:38:56 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0010200 "response to chitin" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01470022 annotation not avaliable (128 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PF05553	38	DUF761: Cotton fibre expressed protein; InterPro:	99.35

>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function

Probab=99.35  E-value=4.5e-13  Score=83.45  Aligned_cols=34  Identities=41%  Similarity=0.712  Sum_probs=30.8

Q ss_pred             CCchhhhhHHHHHHHHHHHHhHhhhhhhhheehhc
Q 044736           84 DNDNIDRNSEVFITNFRRRLLYERQVSLELLYRRV  118 (126)
Q Consensus        84 ~~~dId~~Ae~FI~nFr~Ql~lqRq~Slel~Y~~~  118 (126)
                      ++++||++||+||++||+||+||||.|+ .+|+++
T Consensus         1 ~~~evd~rAe~FI~~f~~qlrlqr~~S~-~ry~em   34 (38)
T PF05553_consen    1 SDDEVDRRAEEFIAKFREQLRLQRQESL-QRYQEM   34 (38)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            3679999999999999999999999999 688765

Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00